BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020605
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 333 bits (853), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 159/283 (56%), Positives = 209/283 (73%), Gaps = 2/283 (0%)
Query: 34 SEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYT 93
+E S + +LL+ A+ PE F+WM +IRR+IHENPELG+EE ETS+L+RSEL+ +GI+Y
Sbjct: 7 AEDTSQIQTKLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYR 66
Query: 94 WPVAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILL 153
+PVA TG++ +G+G P+ LRA+MDALP+QE VEWEHKSK GKMH CGHD H T+LL
Sbjct: 67 YPVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLL 126
Query: 154 GAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTV 213
GAA++L L+GTV L+FQP EEG GA M +EGA+ + +FGIH+S +P G
Sbjct: 127 GAAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKA 186
Query: 214 GSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARV 273
SR G LAG+G F AVI GKGGHAA+PQ T DPV+AAS +L+LQ +VSRETDPL+++V
Sbjct: 187 ASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKV 246
Query: 274 VTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEV 316
VTV ++ G A N+IP+ + GGT R+ T G L+QR+KEV
Sbjct: 247 VTVSKVNGGNAFNVIPDSITIGGTLRAFT--GFTQLQQRVKEV 287
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 159/286 (55%), Gaps = 6/286 (2%)
Query: 33 GSEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIE- 91
G+E L + D A F + RR +HE+PEL F+E ET++ +R L+ IE
Sbjct: 14 GTENLYFQSNAXADKA----FHTRLINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEI 69
Query: 92 YTWPVAKTGIVASV-GSGGEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTT 150
P KTG++A + G P +RA++DALP+QE SK +G H CGHD HT
Sbjct: 70 LDVPQLKTGVIAEIKGREDGPVIAIRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTA 129
Query: 151 ILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPT 210
++G A LL R LKGTV+ +FQP EE GA +++ G ++ +FG H P LP
Sbjct: 130 SIIGTAXLLNQRRAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPV 189
Query: 211 GTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLE 270
GT+G + GPL A RF VIKGKGGHA++P ++ DP+ AA I LQ +VSR L+
Sbjct: 190 GTIGVKEGPLXASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQ 249
Query: 271 ARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEV 316
VV++ + AG + N+IP+ GT R+ E + + + V
Sbjct: 250 NAVVSITRVQAGTSWNVIPDQAEXEGTVRTFQKEARQAVPEHXRRV 295
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 140/277 (50%), Gaps = 4/277 (1%)
Query: 40 LTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKT 99
+ ++L+++ + E M IRR +H++PEL F E ET++ + +E V
Sbjct: 1 MNQQLIETLKSKE--GKMIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPR 58
Query: 100 GIVASVGSGGE-PWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARL 158
GI ++ SG +RA+ DALP+ E S+N G MH CGHD HT +L A
Sbjct: 59 GIKVTIDSGKPGKTLAIRADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAET 118
Query: 159 LKHRMDRLKGTVKLVFQPGEE-GYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRP 217
L D G V ++ QP EE GGA MI+ G +D + G+H+ + TG V RP
Sbjct: 119 LAEMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRP 178
Query: 218 GPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVG 277
G + G F ++GKGGH + P D ++A S+ + LQ +VSR P E VVT+G
Sbjct: 179 GYVQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIG 238
Query: 278 FIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIK 314
D N+I ++V G R LT +E+ IK
Sbjct: 239 SFDGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIK 275
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 123/304 (40%), Gaps = 61/304 (20%)
Query: 34 SEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYT 93
S QL R+L P +W RR H + E G+ E+ T+ V LD LG +
Sbjct: 2 SLQLDEYLRQLA-----PSXTQW----RRDFHLHAESGWLEFRTASKVADILDGLGYQLA 52
Query: 94 W-------------PVAKT--------------------------GIVASVGSGGE-PWF 113
P +T G+VA++ +G P
Sbjct: 53 LGRDVIDADSRXGLPDEETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTGRPGPTL 112
Query: 114 GLRAEMDALPLQEMVEWEHK-------SKNNGKMHGCGHDVHTTILLGAARLLKHRMDRL 166
R + DAL L E + H+ S N G H CGHD HT I LG A +LK +L
Sbjct: 113 AFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAIGLGLAHVLKQYAAQL 172
Query: 167 KGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGR 226
G +KL+FQP EEG GA + G VD IHI +P GTV G + +
Sbjct: 173 NGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAGTVVC-GGDNFXATTK 231
Query: 227 FTAVIKGKGGHA-AMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAG 285
F G HA P+D R+ +LAA+ A L L I A V VG AG
Sbjct: 232 FDVQFSGVAAHAGGKPEDGRNALLAAAQAALGLHAIPPHSAG---ASRVNVGVXQAGTGR 288
Query: 286 NIIP 289
N++P
Sbjct: 289 NVVP 292
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 117/267 (43%), Gaps = 37/267 (13%)
Query: 60 IRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVA--KTGIVASVGSGGE-PWFGLR 116
I RIHE PELG EE S+ + L E +A TG +A+ SG + P G
Sbjct: 21 ISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIATYDSGLDGPAIGFL 80
Query: 117 AEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQP 176
AE DALP G H CGH++ T + A LK +D++ G V ++ P
Sbjct: 81 AEYDALP--------------GLGHACGHNIIGTASVLGAIGLKQVIDQIGGKVVVLGCP 126
Query: 177 ----GEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPT-GTVGSRPGPLLAGSGRFTAVI 231
GE G A Y +K G +D+ IH P T T+ + +L
Sbjct: 127 AEEGGENGSAKASY-VKAGVIDQIDIALXIH--PGNETYKTIDTLAVDVL------DVKF 177
Query: 232 KGKGGHAAMPQDTRDPVLAASFAILTLQHIVS--RETDPLEARVVTVGFIDAGQAGNIIP 289
GK HA+ + D L A A ++ + V+ R+ + RV V +D G+A NIIP
Sbjct: 178 YGKSAHAS---ENADEALNALDAXISYFNGVAQLRQHIKKDQRVHGV-ILDGGKAANIIP 233
Query: 290 EIVRFGGTFRSLTTEGLLYLEQRIKEV 316
+ R+ T + L L +++ ++
Sbjct: 234 DYTHARFYTRAXTRKELDILTEKVNQI 260
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 26/257 (10%)
Query: 79 QLVRSELDSLGIEYTWP-----VAKTGIVASV-GSGGEPWFGLRAEMDALPLQEMVEWEH 132
+ +EL +LG T V IV + G GG+ L + MD + L+ ++
Sbjct: 46 NFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLL-LMSHMDTVYLKGILAKAP 104
Query: 133 KSKNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE-GYGGAYYMI 188
K +G G ++L +LLK R GT+ ++F EE G G+ +I
Sbjct: 105 FRVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLI 164
Query: 189 KEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHA-AMPQDTRDP 247
+E + ++ PT + +G I GK HA A P+ +
Sbjct: 165 QE------EAKLADYVLSFEPTSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNA 218
Query: 248 VLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTE--- 304
++ AS +L +I D + AG NIIP R E
Sbjct: 219 LVEASDLVLRTMNI----DDKAKNLRFNWTIAKAGNVSNIIPASATLNADVRYARNEDFD 274
Query: 305 -GLLYLEQRIKEVKLFE 320
+ LE+R ++ KL E
Sbjct: 275 AAMKTLEERAQQKKLPE 291
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 224 SGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL-QHIVSRETDPLEARVVTVGFIDAG 282
SG T +KGK GH A P +PV + A+L L Q + + + I+ G
Sbjct: 186 SGNLT--VKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGG 243
Query: 283 Q-AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEV 316
A N+IP + FR T L+QR+ +
Sbjct: 244 TGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAI 278
>pdb|2CH7|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of A
Bacterial Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 28 KETQSGSEQLSSLTRELLDSAREPEFF 54
+ET +GSE++SS T+ + DSA++ F
Sbjct: 54 QETTAGSEEISSATKNIADSAQQAASF 80
>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A
Bacterial Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 28 KETQSGSEQLSSLTRELLDSAREPEFF 54
+ET +GSE++SS T+ + DSA++ F
Sbjct: 54 QETTAGSEEISSATKNIADSAQQAASF 80
>pdb|1NOG|A Chain A, Crystal Structure Of Conserved Protein 0546 From
Thermoplasma Acidophilum
Length = 177
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 287 IIPEIVRFGGTFRSLTTEGLLYLEQRIKEVK 317
++ E V GG R++T E + YLE R+KE+K
Sbjct: 64 VLGEDVSTGGKGRTVTREMIDYLEARVKEMK 94
>pdb|2OKG|A Chain A, Structure Of Effector Binding Domain Of Central Glycolytic
Gene Regulator (Cggr) From B. Subtilis
pdb|2OKG|B Chain B, Structure Of Effector Binding Domain Of Central Glycolytic
Gene Regulator (Cggr) From B. Subtilis
Length = 255
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 142 GCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAV 193
G G DV A + H ++ GT +L+F PG+ G +I+E +V
Sbjct: 92 GLGEDVKNQ----ANTICAHXAEKASGTYRLLFVPGQLSQGAYSSIIEEPSV 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,695,024
Number of Sequences: 62578
Number of extensions: 422874
Number of successful extensions: 995
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 13
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)