Query 020605
Match_columns 324
No_of_seqs 215 out of 1589
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02693 IAA-amino acid hydrol 100.0 2.9E-49 6.3E-54 374.2 37.7 281 41-323 33-313 (437)
2 PLN02280 IAA-amino acid hydrol 100.0 1.4E-48 3E-53 371.9 35.0 270 53-322 95-364 (478)
3 TIGR01891 amidohydrolases amid 100.0 2.4E-47 5.2E-52 354.9 32.3 265 58-322 2-268 (363)
4 PRK06915 acetylornithine deace 100.0 4.2E-45 9.2E-50 346.4 31.8 270 41-322 5-312 (422)
5 COG1473 AbgB Metal-dependent a 100.0 1.2E-44 2.6E-49 333.2 32.3 270 55-324 12-284 (392)
6 PRK08588 succinyl-diaminopimel 100.0 1.9E-44 4.2E-49 337.2 31.2 259 55-322 2-274 (377)
7 PRK13013 succinyl-diaminopimel 100.0 4.1E-43 8.9E-48 333.4 31.8 271 43-322 4-319 (427)
8 PRK06837 acetylornithine deace 100.0 1E-42 2.2E-47 330.4 31.8 270 40-321 7-316 (427)
9 PRK06133 glutamate carboxypept 100.0 2.4E-42 5.3E-47 326.0 33.7 265 41-319 25-302 (410)
10 PRK07338 hypothetical protein; 100.0 1.8E-42 4E-47 326.4 31.1 265 41-321 5-297 (402)
11 PRK08596 acetylornithine deace 100.0 5.8E-42 1.3E-46 324.6 31.4 265 44-321 4-302 (421)
12 PRK05111 acetylornithine deace 100.0 6.2E-42 1.3E-46 320.9 30.5 257 55-323 5-287 (383)
13 PRK13004 peptidase; Reviewed 100.0 1E-41 2.2E-46 320.9 30.3 266 41-318 3-280 (399)
14 TIGR01910 DapE-ArgE acetylorni 100.0 5.8E-42 1.3E-46 320.2 27.7 256 59-321 2-282 (375)
15 TIGR01892 AcOrn-deacetyl acety 100.0 1.1E-41 2.5E-46 317.0 29.4 250 60-321 2-272 (364)
16 TIGR03526 selenium_YgeY putati 100.0 1.5E-41 3.2E-46 319.5 29.9 265 43-319 3-279 (395)
17 PRK13009 succinyl-diaminopimel 100.0 4E-41 8.6E-46 314.6 31.1 261 55-319 2-277 (375)
18 TIGR03320 ygeY M20/DapE family 100.0 2.6E-41 5.6E-46 317.9 29.4 265 43-319 3-279 (395)
19 PRK07522 acetylornithine deace 100.0 2.2E-41 4.8E-46 317.4 28.5 254 55-319 4-280 (385)
20 PRK13983 diaminopimelate amino 100.0 3.3E-41 7.1E-46 317.7 29.7 263 55-322 5-301 (400)
21 TIGR01880 Ac-peptdase-euk N-ac 100.0 3.4E-41 7.4E-46 317.6 29.5 262 55-319 9-295 (400)
22 TIGR01900 dapE-gram_pos succin 100.0 2.5E-41 5.3E-46 315.2 28.1 250 60-317 1-277 (373)
23 TIGR01246 dapE_proteo succinyl 100.0 4.6E-41 1E-45 313.6 29.6 258 58-319 2-274 (370)
24 PRK06446 hypothetical protein; 100.0 3.4E-41 7.3E-46 320.6 27.1 261 55-319 2-330 (436)
25 PRK08201 hypothetical protein; 100.0 5.7E-41 1.2E-45 321.0 28.2 273 42-319 3-349 (456)
26 PRK09133 hypothetical protein; 100.0 9.4E-41 2E-45 320.7 28.5 259 55-319 37-366 (472)
27 PRK13007 succinyl-diaminopimel 100.0 3.9E-40 8.4E-45 305.4 28.9 249 55-320 7-266 (352)
28 PRK07907 hypothetical protein; 100.0 7E-40 1.5E-44 312.8 29.0 272 41-320 6-342 (449)
29 PRK07473 carboxypeptidase; Pro 100.0 1.8E-39 3.9E-44 302.9 31.0 249 55-317 11-274 (376)
30 PRK08651 succinyl-diaminopimel 100.0 1.4E-39 3E-44 306.2 30.1 257 55-323 6-292 (394)
31 PRK09104 hypothetical protein; 100.0 1E-39 2.3E-44 312.8 29.0 273 41-319 5-357 (464)
32 PRK08262 hypothetical protein; 100.0 1.1E-39 2.4E-44 314.4 28.0 260 55-319 44-379 (486)
33 PRK08737 acetylornithine deace 100.0 8.5E-39 1.8E-43 296.9 29.7 243 55-319 6-267 (364)
34 PRK08652 acetylornithine deace 100.0 5.6E-39 1.2E-43 297.0 27.0 242 55-319 2-249 (347)
35 PRK04443 acetyl-lysine deacety 100.0 1.3E-38 2.8E-43 294.6 27.9 242 54-318 5-253 (348)
36 PRK07906 hypothetical protein; 100.0 7.4E-39 1.6E-43 304.0 26.4 256 58-317 2-321 (426)
37 PRK00466 acetyl-lysine deacety 100.0 1.9E-38 4.1E-43 293.3 28.1 236 55-319 10-249 (346)
38 PRK07079 hypothetical protein; 100.0 1.3E-37 2.8E-42 298.7 30.3 273 41-320 7-353 (469)
39 TIGR01883 PepT-like peptidase 100.0 2.4E-37 5.2E-42 287.7 28.3 249 57-322 2-266 (361)
40 COG0624 ArgE Acetylornithine d 100.0 8.1E-37 1.8E-41 288.6 29.3 262 55-321 13-306 (409)
41 PRK07205 hypothetical protein; 100.0 5.2E-37 1.1E-41 292.6 27.6 258 55-319 11-346 (444)
42 TIGR01886 dipeptidase dipeptid 100.0 5.5E-37 1.2E-41 293.4 27.3 264 44-319 4-369 (466)
43 PRK13381 peptidase T; Provisio 100.0 1.7E-36 3.8E-41 285.8 29.9 251 57-323 3-303 (404)
44 PRK07318 dipeptidase PepV; Rev 100.0 1.5E-36 3.3E-41 291.0 27.6 265 43-319 4-369 (466)
45 PRK05469 peptidase T; Provisio 100.0 1.3E-35 2.8E-40 280.3 28.1 253 55-323 2-305 (408)
46 TIGR01882 peptidase-T peptidas 100.0 2.1E-35 4.6E-40 278.7 26.6 254 55-323 3-307 (410)
47 TIGR01902 dapE-lys-deAc N-acet 100.0 4.5E-35 9.7E-40 269.8 26.8 231 60-315 2-236 (336)
48 KOG2275 Aminoacylase ACY1 and 100.0 1.2E-34 2.7E-39 259.5 27.8 262 55-320 25-314 (420)
49 PRK12892 allantoate amidohydro 100.0 6.5E-35 1.4E-39 275.9 26.9 248 55-322 10-313 (412)
50 PRK15026 aminoacyl-histidine d 100.0 1E-34 2.2E-39 277.6 28.3 245 55-319 10-289 (485)
51 PRK06156 hypothetical protein; 100.0 3E-34 6.4E-39 278.0 31.6 257 55-321 46-416 (520)
52 PRK09290 allantoate amidohydro 100.0 2.8E-34 6.1E-39 271.5 28.1 246 55-322 7-313 (413)
53 PRK12893 allantoate amidohydro 100.0 6.8E-34 1.5E-38 269.0 29.5 248 55-322 10-312 (412)
54 TIGR01887 dipeptidaselike dipe 100.0 7.2E-34 1.6E-38 270.1 28.4 254 55-317 2-354 (447)
55 PRK12891 allantoate amidohydro 100.0 3.1E-33 6.6E-38 264.4 29.1 234 68-322 33-312 (414)
56 TIGR01893 aa-his-dipept aminoa 100.0 5.9E-33 1.3E-37 266.8 28.3 250 55-321 4-285 (477)
57 PRK12890 allantoate amidohydro 100.0 2.8E-32 6E-37 258.0 30.5 237 64-322 27-314 (414)
58 TIGR01879 hydantase amidase, h 100.0 3E-31 6.6E-36 249.8 28.1 237 66-322 22-305 (401)
59 PRK13799 unknown domain/N-carb 100.0 3.8E-30 8.2E-35 251.8 29.5 247 54-323 180-492 (591)
60 TIGR03176 AllC allantoate amid 100.0 3.5E-30 7.7E-35 242.4 27.9 232 71-323 29-307 (406)
61 PRK13590 putative bifunctional 100.0 1.4E-29 3.1E-34 247.9 30.1 244 55-323 181-490 (591)
62 PRK08554 peptidase; Reviewed 100.0 5.4E-30 1.2E-34 243.2 25.0 258 56-319 2-338 (438)
63 KOG2276 Metalloexopeptidases [ 100.0 7E-28 1.5E-32 214.3 22.5 275 41-320 4-364 (473)
64 PF07687 M20_dimer: Peptidase 99.8 5E-19 1.1E-23 136.5 12.3 104 221-324 3-111 (111)
65 COG4187 RocB Arginine degradat 99.8 2E-18 4.3E-23 155.7 17.6 261 55-321 8-326 (553)
66 PRK10199 alkaline phosphatase 99.7 5.2E-16 1.1E-20 140.4 18.7 131 55-190 35-188 (346)
67 COG2195 PepD Di- and tripeptid 99.7 6.5E-16 1.4E-20 143.1 12.7 256 55-324 5-313 (414)
68 TIGR03106 trio_M42_hydro hydro 99.6 7.1E-14 1.5E-18 128.1 15.7 129 55-184 3-223 (343)
69 PF01546 Peptidase_M20: Peptid 99.5 2.3E-14 5E-19 120.8 8.3 88 114-203 1-99 (189)
70 PRK09961 exoaminopeptidase; Pr 99.4 1.8E-11 3.9E-16 112.6 16.3 142 59-206 4-224 (344)
71 COG1363 FrvX Cellulase M and r 99.3 3.2E-11 6.9E-16 109.7 14.5 146 55-206 2-238 (355)
72 TIGR03107 glu_aminopep glutamy 99.3 7.9E-11 1.7E-15 108.1 14.9 142 59-206 2-236 (350)
73 PRK09864 putative peptidase; P 99.3 2E-10 4.4E-15 105.3 15.4 139 59-206 4-231 (356)
74 KOG2194 Aminopeptidases of the 98.7 3.6E-07 7.8E-12 90.5 13.3 134 55-203 57-224 (834)
75 PF04389 Peptidase_M28: Peptid 98.4 6.7E-07 1.4E-11 74.7 6.7 82 112-204 2-89 (179)
76 PF05343 Peptidase_M42: M42 gl 98.1 2.6E-05 5.6E-10 70.2 10.0 64 138-206 126-192 (292)
77 KOG3946 Glutaminyl cyclase [Po 98.1 0.00017 3.6E-09 62.8 14.3 124 55-190 51-200 (338)
78 KOG2526 Predicted aminopeptida 97.6 0.0021 4.5E-08 59.3 13.8 114 79-203 165-304 (555)
79 COG2234 Iap Predicted aminopep 96.9 0.0035 7.6E-08 59.9 7.8 76 111-203 209-289 (435)
80 KOG2195 Transferrin receptor a 96.4 0.012 2.5E-07 58.9 8.0 76 99-190 339-420 (702)
81 PF05450 Nicastrin: Nicastrin; 94.4 0.18 3.8E-06 44.0 7.4 66 111-189 1-73 (234)
82 PF00883 Peptidase_M17: Cytoso 93.0 0.41 8.9E-06 43.3 7.5 120 58-179 1-140 (311)
83 cd00433 Peptidase_M17 Cytosol 92.7 3.3 7.2E-05 40.0 13.6 124 54-179 153-295 (468)
84 PTZ00412 leucyl aminopeptidase 92.2 3.7 8.1E-05 40.1 13.1 120 54-179 211-354 (569)
85 PRK00913 multifunctional amino 92.0 3.7 8.1E-05 39.7 12.9 123 53-179 169-309 (483)
86 KOG2597 Predicted aminopeptida 91.9 2 4.4E-05 41.3 10.8 123 55-179 189-330 (513)
87 TIGR01893 aa-his-dipept aminoa 91.6 0.38 8.3E-06 46.6 5.9 44 270-319 336-379 (477)
88 PRK05015 aminopeptidase B; Pro 91.6 5.6 0.00012 37.6 13.1 120 55-179 100-246 (424)
89 COG0260 PepB Leucyl aminopepti 79.4 39 0.00084 32.8 12.1 117 55-179 167-308 (485)
90 COG4882 Predicted aminopeptida 75.7 12 0.00025 34.6 7.0 71 99-190 179-259 (486)
91 PF04114 Gaa1: Gaa1-like, GPI 60.5 41 0.0009 32.9 8.0 73 97-190 2-77 (504)
92 PRK02256 putative aminopeptida 54.4 25 0.00055 33.9 5.3 41 137-181 251-293 (462)
93 PRK15026 aminoacyl-histidine d 52.8 36 0.00078 33.1 6.1 42 272-319 344-385 (485)
94 PF06675 DUF1177: Protein of u 46.0 2.1E+02 0.0045 25.2 10.2 88 109-206 30-132 (276)
95 TIGR01004 PulS_OutS lipoprotei 42.0 1.7E+02 0.0036 22.9 8.1 83 1-93 1-83 (128)
96 PRK06156 hypothetical protein; 40.8 62 0.0014 31.7 5.8 26 272-297 239-264 (520)
97 COG4635 HemG Flavodoxin [Energ 37.4 32 0.00068 28.0 2.5 33 63-95 3-35 (175)
98 KOG3566 Glycosylphosphatidylin 35.1 2.9E+02 0.0062 27.5 8.9 89 80-190 93-193 (617)
99 COG2195 PepD Di- and tripeptid 30.9 66 0.0014 30.6 4.0 68 111-185 62-139 (414)
100 PTZ00371 aspartyl aminopeptida 29.3 2.2E+02 0.0048 27.6 7.4 51 71-121 19-89 (465)
101 PRK02813 putative aminopeptida 27.5 2.3E+02 0.005 27.1 7.1 51 71-121 18-87 (428)
102 PF03668 ATP_bind_2: P-loop AT 27.1 2.6E+02 0.0056 25.2 6.8 30 273-303 161-190 (284)
103 PF09940 DUF2172: Domain of un 26.8 2.7E+02 0.0059 26.1 7.1 87 82-190 96-187 (386)
104 PRK02813 putative aminopeptida 25.1 96 0.0021 29.7 4.1 39 138-181 226-266 (428)
105 cd06411 PB1_p51 The PB1 domain 22.3 1.3E+02 0.0028 21.3 3.2 30 291-320 4-33 (78)
106 COG3149 PulM Type II secretory 21.5 4.3E+02 0.0093 21.8 6.4 47 43-94 75-121 (181)
107 COG2984 ABC-type uncharacteriz 21.4 6.4E+02 0.014 23.1 11.4 65 111-182 110-174 (322)
No 1
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=2.9e-49 Score=374.18 Aligned_cols=281 Identities=57% Similarity=0.951 Sum_probs=245.4
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecc
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMD 120 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~D 120 (324)
..++..........+++++++++|+++|++|++|.++++|+.++|+++|++++....++|++|.++++++|+|+|.||||
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~g~~~g~~i~l~~h~D 112 (437)
T PLN02693 33 QINLLELAKSPEVFDWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIGTGEPPFVALRADMD 112 (437)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEECCCCCCEEEEEeecC
Confidence 44444433332233789999999999999999999999999999999999987545678999999655569999999999
Q ss_pred cCCCCCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCcccHHHHHHccCcCCcceEE
Q 020605 121 ALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMF 200 (324)
Q Consensus 121 tVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i 200 (324)
|||+++..+|+|.+..+|++||||+|+++|++++|++.|++.+..++++|.|+|++|||++.|++.++++|.+++.|+++
T Consensus 113 aVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~~~Ga~~~i~~g~~~~~~~ii 192 (437)
T PLN02693 113 ALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIF 192 (437)
T ss_pred CCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccchhhHHHHHHCCCCCCCCEEE
Confidence 99998878899988889999999999999999999999998776678999999999999767999999999877778888
Q ss_pred EeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEE
Q 020605 201 GIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFID 280 (324)
Q Consensus 201 ~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~ 280 (324)
..+.++..+.|.+..+.|..++|..+++|+++|+++|+|.|+.|+|||..+++++..|+++..+..++....++|++.|+
T Consensus 193 g~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~~~~ti~vg~i~ 272 (437)
T PLN02693 193 GIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVN 272 (437)
T ss_pred EEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCCCCcEEEEEEEE
Confidence 88877777788877777888889999999999999999999999999999999999999886555555667899999999
Q ss_pred cCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHhh
Q 020605 281 AGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVAY 323 (324)
Q Consensus 281 gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~~ 323 (324)
||...|+||++|++++|+|+.+.. +.+.++|+++++..+..
T Consensus 273 GG~~~NvVPd~a~~~~diR~~~~~--~~i~~~i~~i~~~~a~~ 313 (437)
T PLN02693 273 GGNAFNVIPDSITIGGTLRAFTGF--TQLQQRIKEIITKQAAV 313 (437)
T ss_pred cCCCCceECCeEEEEEEEecCCHH--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999974 58999999999886543
No 2
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=1.4e-48 Score=371.86 Aligned_cols=270 Identities=54% Similarity=0.921 Sum_probs=245.1
Q ss_pred hHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccCCCCCCCCCcc
Q 020605 53 FFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEH 132 (324)
Q Consensus 53 ~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~~~ 132 (324)
..+.+.++.+.++++|+++++|.++++|+.++|+++|++++....++|++++++++++|+|+|+|||||||+++..+|++
T Consensus 95 ~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~g~~~~~~I~l~gh~DaVP~~e~~~w~~ 174 (478)
T PLN02280 95 TVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWIGTGGPPFVAVRADMDALPIQEAVEWEH 174 (478)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEECCCCCCEEEEEEecCCCcccCCCCCCC
Confidence 34788899999999999999999999999999999999988766788999999544458999999999999988778999
Q ss_pred ccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCcccHHHHHHccCcCCcceEEEeccCCCCCCce
Q 020605 133 KSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGT 212 (324)
Q Consensus 133 ~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 212 (324)
+++++|++||||+|+++|++++++++|++.+.+++++|.|+|++|||.+.|+++++++|.+++.|+++++|+.+..|++.
T Consensus 175 ~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~li~~g~~~~~d~~~~~h~~~~~p~g~ 254 (478)
T PLN02280 175 KSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGNGAKRMIGDGALDDVEAIFAVHVSHEHPTAV 254 (478)
T ss_pred CCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccccccchHHHHHHCCCCcCCCEEEEEecCCCCCCce
Confidence 98889999999999999999999999988777789999999999999777999999999888889999999877778887
Q ss_pred EEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCeE
Q 020605 213 VGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIV 292 (324)
Q Consensus 213 ~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a 292 (324)
+..+.+...+|..+++|+++|+++|++.|+.|.||+..+++++..++.+..+...+....++|++.|+||...|+||++|
T Consensus 255 ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~~~~tvnvg~I~GG~~~NvIPd~~ 334 (478)
T PLN02280 255 IGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPLDSQVVSVTTMDGGNNLDMIPDTV 334 (478)
T ss_pred eEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEEccCCCCEeCCEE
Confidence 77777777789999999999999999999999999999999999999886555455567899999999999999999999
Q ss_pred EEEEEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 293 RFGGTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 293 ~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
++++|+|+++.++.+++.++|++++++.+.
T Consensus 335 ~l~~diR~~~~e~~e~l~~~I~~~~~~~a~ 364 (478)
T PLN02280 335 VLGGTFRAFSNTSFYQLLKRIQEVIVEQAG 364 (478)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988654
No 3
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=2.4e-47 Score=354.93 Aligned_cols=265 Identities=49% Similarity=0.782 Sum_probs=233.7
Q ss_pred HHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEe-cCCCceEEEEeCCC-CCCEEEEEEecccCCCCCCCCCccccc
Q 020605 58 RRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTW-PVAKTGIVASVGSG-GEPWFGLRAEMDALPLQEMVEWEHKSK 135 (324)
Q Consensus 58 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~-~~~~~nvia~~~~~-~~~~i~l~~H~DtVp~~~~~~~~~~~~ 135 (324)
++++++|++|||+|++|.++++||.++|+++|++++. .....|++++++++ ++|+|+|+||+||||++++..+||...
T Consensus 2 ~~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~ 81 (363)
T TIGR01891 2 TDIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKST 81 (363)
T ss_pred hHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccC
Confidence 5789999999999999999999999999999999886 44567899999764 468999999999999877666889876
Q ss_pred cCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCcccHHHHHHccCcCCcceEEEeccCCCCCCceEEe
Q 020605 136 NNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGS 215 (324)
Q Consensus 136 ~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 215 (324)
+||++||||+|+++++++.|+..|++.+..++++|.|+|++|||.+.|++.+++++.+++.|++++.|+++..+.+.+..
T Consensus 82 ~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~~~ 161 (363)
T TIGR01891 82 NPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIEDGVLDDVDAILGLHPDPSIPAGTVGL 161 (363)
T ss_pred CCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHCCCCCCcCEEEEECCCCCCCCeEEEE
Confidence 78999999999999999999999988766678999999999999778999999988777789999998877667776656
Q ss_pred ecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCeEEEE
Q 020605 216 RPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFG 295 (324)
Q Consensus 216 ~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~ 295 (324)
..+..++|..+++++++|+++|++.|+.|.||+..+++++.+++++......+....++|++.|+||.+.|+||++|+++
T Consensus 162 ~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~i~gG~~~nvvP~~~~~~ 241 (363)
T TIGR01891 162 RPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVVTVGIIEAGGAPNVIPDKASMS 241 (363)
T ss_pred CCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEEcCCCCcEECCeeEEE
Confidence 66777889999999999999999999999999999999999998864332233345789999999999999999999999
Q ss_pred EEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 296 GTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 296 ~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
+|+|++|.++.+++.+.|++++++.+.
T Consensus 242 ~diR~~~~~~~e~~~~~i~~~~~~~~~ 268 (363)
T TIGR01891 242 GTVRSLDPEVRDQIIDRIERIVEGAAA 268 (363)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988754
No 4
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=4.2e-45 Score=346.43 Aligned_cols=270 Identities=22% Similarity=0.256 Sum_probs=229.8
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec--------------------CCCce
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP--------------------VAKTG 100 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--------------------~~~~n 100 (324)
.+++.++++..+ +++++++++|++|||+|++|.++++||+++|+++|++++.. ..++|
T Consensus 5 ~~~~~~~~~~~~--~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 82 (422)
T PRK06915 5 KKQICDYIESHE--EEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPN 82 (422)
T ss_pred HHHHHHHHHhhH--HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCce
Confidence 677888888877 99999999999999999999999999999999999997531 24689
Q ss_pred EEEEeCCC-CCCEEEEEEecccCCCCCCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEE
Q 020605 101 IVASVGSG-GEPWFGLRAEMDALPLQEMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKL 172 (324)
Q Consensus 101 via~~~~~-~~~~i~l~~H~DtVp~~~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~ 172 (324)
+++++++. ++|+|+|+|||||||+++.+.| ||.. .+||++|||| +||+++++|.|++.|++.+..++++|.|
T Consensus 83 lia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~ 162 (422)
T PRK06915 83 IVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIF 162 (422)
T ss_pred EEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 99999653 4689999999999999877778 7765 4699999999 3899999999999999887778899999
Q ss_pred EEeccCCC-cccHHHHHHccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHH
Q 020605 173 VFQPGEEG-YGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAA 251 (324)
Q Consensus 173 ~~~~dEE~-~~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l 251 (324)
+|++|||. +.|+..++..++ +.|++++.+ |++.. ....++|..+++|+++|+++|+|.|+.|.||+..+
T Consensus 163 ~~~~dEE~g~~G~~~~~~~~~--~~d~~i~~e-----p~~~~---i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~ 232 (422)
T PRK06915 163 QSVIEEESGGAGTLAAILRGY--KADGAIIPE-----PTNMK---FFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKS 232 (422)
T ss_pred EEecccccCCcchHHHHhcCc--CCCEEEECC-----CCCcc---ceeecccEEEEEEEEEeeccccCCCCcCcCHHHHH
Confidence 99999994 568888888875 579988744 33321 12345899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccc----CCCC-----CCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 252 SFAILTLQHIVSRE----TDPL-----EARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 252 ~~~l~~l~~~~~~~----~~~~-----~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
++++..|+++.... ..+. .+.++|++.|+||...|+||+.|++.+|+|++|.++.+++.+.|++.+++.+.
T Consensus 233 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~~~ 312 (422)
T PRK06915 233 MFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGSWPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIAELND 312 (422)
T ss_pred HHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEeeCCCCCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 99999998875321 1111 24589999999999999999999999999999999999999999999987654
No 5
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=1.2e-44 Score=333.22 Aligned_cols=270 Identities=48% Similarity=0.730 Sum_probs=254.3
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCC-CceEEEEeCCC-CCCEEEEEEecccCCCCCCCCCcc
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVA-KTGIVASVGSG-GEPWFGLRAEMDALPLQEMVEWEH 132 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~-~~nvia~~~~~-~~~~i~l~~H~DtVp~~~~~~~~~ 132 (324)
++++++.|+|+++|+.+++|.++++|+++.|+++|+++....+ ++.++|.++++ ++|+|.|.+.||.+|..+.+.+||
T Consensus 12 ~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~g~tIalRAD~DALPi~E~t~~~~ 91 (392)
T COG1473 12 DELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKPGPTIALRADMDALPIQEETGLPF 91 (392)
T ss_pred HHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCCCCEEEEEeecccCccccccCCCc
Confidence 9999999999999999999999999999999999999544443 68899999865 567999999999999999999999
Q ss_pred ccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCcccHHHHHHccCcCC-cceEEEeccCCCCCCc
Q 020605 133 KSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKEGAVDK-FQGMFGIHISPVLPTG 211 (324)
Q Consensus 133 ~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~-~d~~i~~~~~~~~~~~ 211 (324)
.+..+|++|+||+|++.+++|+++++|++...+++++|.|+|++.||++.|+..|+++|.+++ +|+++.+|+.|+.|.|
T Consensus 92 ~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~Ga~~mi~~G~~~~~vD~v~g~H~~p~~~~g 171 (392)
T COG1473 92 ASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGGGAKAMIEDGVFDDFVDAVFGLHPGPGLPVG 171 (392)
T ss_pred ccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccccHHHHHhcCCccccccEEEEecCCCCCCCc
Confidence 999999999999999999999999999988667999999999999998779999999999998 9999999998877899
Q ss_pred eEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCe
Q 020605 212 TVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEI 291 (324)
Q Consensus 212 ~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~ 291 (324)
.+..+.|....+...++++++|+++|++.|+.++||+..++.++..|+.+..+..+|.+..+++++.++||.+.|+||+.
T Consensus 172 ~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~~~vv~vg~~~aG~a~NVIpd~ 251 (392)
T COG1473 172 TVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAVVTVGKIEAGTAANVIPDS 251 (392)
T ss_pred eEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCccCeEEEEEEecCCCcCCcCCCe
Confidence 99999998888999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred EEEEEEEecCChhhHHHHHHHHHHHHHHHHhhC
Q 020605 292 VRFGGTFRSLTTEGLLYLEQRIKEVKLFEVAYQ 324 (324)
Q Consensus 292 a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~~~ 324 (324)
|++.+++|....+..+.+.++|+++++.++..|
T Consensus 252 A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~ 284 (392)
T COG1473 252 AELEGTIRTFSDEVREKLEARIERIAKGIAAAY 284 (392)
T ss_pred eEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998764
No 6
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.9e-44 Score=337.16 Aligned_cols=259 Identities=21% Similarity=0.236 Sum_probs=222.7
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec---CCCceEEEEeCCCCCCEEEEEEecccCCCCCCCCC-
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP---VAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEW- 130 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~- 130 (324)
++.++++++|+++||+|++|.++++||.++|+++|++++.. ++++|+++++++++ |+|+|+||+||||+++...|
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~g~~~-~~il~~~H~DtVp~~~~~~w~ 80 (377)
T PRK08588 2 EEKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEIGSGS-PVLALSGHMDVVAAGDVDKWT 80 (377)
T ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEeCCCC-ceEEEEeeecccCCCCcccCc
Confidence 67889999999999999999999999999999999998753 35689999995544 89999999999999776677
Q ss_pred --cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccCcCCcceEEEec
Q 020605 131 --EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGAVDKFQGMFGIH 203 (324)
Q Consensus 131 --~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~~~~~d~~i~~~ 203 (324)
||.. .+||++|||| +|+++++++.|++.|++.+..++++|.|+|++|||. +.|++.+++++++.++|++++.+
T Consensus 81 ~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~~~~~~~d~~i~~e 160 (377)
T PRK08588 81 YDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEKGYADDLDALIIGE 160 (377)
T ss_pred CCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhcCccCCCCEEEEec
Confidence 6763 5689999999 389999999999999988877889999999999995 46999999998777789888765
Q ss_pred cCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhccc---CCCCCCceEEEEEEE
Q 020605 204 ISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRE---TDPLEARVVTVGFID 280 (324)
Q Consensus 204 ~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~---~~~~~~~~~~v~~i~ 280 (324)
++. ...+ ..++|..+++|+++|+++|+|.|+.|.|||..+++++..++++..+. ....+.+++|++.|+
T Consensus 161 p~~---~~i~-----~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~t~~v~~i~ 232 (377)
T PRK08588 161 PSG---HGIV-----YAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGLTHVVTIIN 232 (377)
T ss_pred CCC---ceeE-----EEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhhhcccCccCCCCceeeeEEe
Confidence 421 1111 23479999999999999999999999999999999999998765322 123456899999999
Q ss_pred cCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 281 AGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 281 gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
||...|+||++|++++|+|+.|.++.+++.+.|++++++.+.
T Consensus 233 gG~~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~ 274 (377)
T PRK08588 233 GGEQVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQ 274 (377)
T ss_pred CCCcCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 7
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=4.1e-43 Score=333.42 Aligned_cols=271 Identities=14% Similarity=0.130 Sum_probs=221.6
Q ss_pred HHHHhccCcchHHHHHHHHHHhccCCCCC--c-chHHHHHHHHHHHhhCCCceEecC-----C------CceEEEEeCCC
Q 020605 43 ELLDSAREPEFFEWMRRIRRRIHENPELG--F-EEYETSQLVRSELDSLGIEYTWPV-----A------KTGIVASVGSG 108 (324)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~l~~ips~s--~-~e~~~~~~l~~~l~~~G~~~~~~~-----~------~~nvia~~~~~ 108 (324)
++.++++..+ +++++++++|++|||++ + +|.++++||.++|+++|++++... . ++|++++++++
T Consensus 4 ~~~~~~~~~~--~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~ 81 (427)
T PRK13013 4 RLFAAIEARR--DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGA 81 (427)
T ss_pred HHHHHHHHhH--HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCC
Confidence 4667777776 89999999999999986 3 568999999999999999987531 1 46999999654
Q ss_pred -CCCEEEEEEecccCCCCC-CCCCcccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-
Q 020605 109 -GEPWFGLRAEMDALPLQE-MVEWEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY- 181 (324)
Q Consensus 109 -~~~~i~l~~H~DtVp~~~-~~~~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~- 181 (324)
++|+|+|+||+||||+++ |+.+||.. .+||++|||| |||+++++|.|+++|++.+..++++|.|+|++|||.+
T Consensus 82 ~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~ 161 (427)
T PRK13013 82 RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGG 161 (427)
T ss_pred CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCC
Confidence 458999999999999864 23447875 4689999999 5999999999999999887778899999999999954
Q ss_pred -ccHHHHHHccCcC--CcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Q 020605 182 -GGAYYMIKEGAVD--KFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL 258 (324)
Q Consensus 182 -~G~~~~~~~~~~~--~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l 258 (324)
.|..++++.+.+. ..|++++.+++. ...+. ..++|..+++|+++|+++|++.|+.|.|||..++++|.+|
T Consensus 162 ~~g~~~l~~~~~~~~~~~d~~i~~ep~~---~~~i~----~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l 234 (427)
T PRK13013 162 FGGVAYLAEQGRFSPDRVQHVIIPEPLN---KDRIC----LGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEI 234 (427)
T ss_pred hhHHHHHHhcCCccccCCCEEEEecCCC---CCceE----EeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHH
Confidence 3778888887665 568888765321 11121 2347999999999999999999999999999999999999
Q ss_pred HHhhcc-----cC------CCCCCceEEEEEEEcCCCC----------cccCCeEEEEEEEecCChhhHHHHHHHHHHHH
Q 020605 259 QHIVSR-----ET------DPLEARVVTVGFIDAGQAG----------NIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVK 317 (324)
Q Consensus 259 ~~~~~~-----~~------~~~~~~~~~v~~i~gg~~~----------n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i 317 (324)
++...+ .. ......++|++.|+||... |+||++|++++|+|++|.++.+++.+.|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i 314 (427)
T PRK13013 235 EERLFPLLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALL 314 (427)
T ss_pred HHHhhhhhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 765311 00 0013578999999999776 99999999999999999999999999999999
Q ss_pred HHHHh
Q 020605 318 LFEVA 322 (324)
Q Consensus 318 ~~~a~ 322 (324)
++.++
T Consensus 315 ~~~~~ 319 (427)
T PRK13013 315 ERLKR 319 (427)
T ss_pred HHHHh
Confidence 87653
No 8
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=1e-42 Score=330.35 Aligned_cols=270 Identities=16% Similarity=0.116 Sum_probs=227.1
Q ss_pred hHHHHHHhccCcchHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec--------------------CCCc
Q 020605 40 LTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP--------------------VAKT 99 (324)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--------------------~~~~ 99 (324)
..+++.++++... +++++++++|++|||+|++|.++++||.++|+++|++++.. ++++
T Consensus 7 ~~~~~~~~i~~~~--~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (427)
T PRK06837 7 LTQRILAAVDAGF--DAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAP 84 (427)
T ss_pred HHHHHHHHHHhhh--HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCc
Confidence 3667888888877 99999999999999999999999999999999999987641 2568
Q ss_pred eEEEEeCCC--CCCEEEEEEecccCCCCCCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceE
Q 020605 100 GIVASVGSG--GEPWFGLRAEMDALPLQEMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTV 170 (324)
Q Consensus 100 nvia~~~~~--~~~~i~l~~H~DtVp~~~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i 170 (324)
||++++++. .+|+|+|+|||||||+++.+.| ||.. .+||++|||| +||+++++|.|++++++.+..++++|
T Consensus 85 nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~i 164 (427)
T PRK06837 85 NVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAARV 164 (427)
T ss_pred eEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcE
Confidence 999999653 3689999999999999765556 7765 4689999999 48999999999999998887788999
Q ss_pred EEEEeccCC-CcccHHHHHHccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHH
Q 020605 171 KLVFQPGEE-GYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVL 249 (324)
Q Consensus 171 ~~~~~~dEE-~~~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~ 249 (324)
.|+|++||| ++.|+..++..++ ..|++++.++ ++.. ....++|..+++++++|+++|+|.|+.|.||+.
T Consensus 165 ~~~~~~dEE~~g~g~~~~~~~~~--~~d~~iv~ep-----~~~~---i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~ 234 (427)
T PRK06837 165 HFQSVIEEESTGNGALSTLQRGY--RADACLIPEP-----TGEK---LVRAQVGVIWFRLRVRGAPVHVREAGTGANAID 234 (427)
T ss_pred EEEEEeccccCCHhHHHHHhcCc--CCCEEEEcCC-----CCCc---cccccceeEEEEEEEEeeccccCCcccCcCHHH
Confidence 999999999 5568888888775 5788887553 2211 112347999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc-----CC-----CCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 250 AASFAILTLQHIVSRE-----TD-----PLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 250 ~l~~~l~~l~~~~~~~-----~~-----~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
.+++++.+|+++.... .. ...+.++|++.|+||...|+||+.|++.+++|+.|.++.+++.+.|++.+++
T Consensus 235 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~~ 314 (427)
T PRK06837 235 AAYHLIQALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGDWASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLAA 314 (427)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCCCCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHHH
Confidence 9999999998764211 00 1234589999999999999999999999999999999999999999999987
Q ss_pred HH
Q 020605 320 EV 321 (324)
Q Consensus 320 ~a 321 (324)
.+
T Consensus 315 ~~ 316 (427)
T PRK06837 315 AA 316 (427)
T ss_pred HH
Confidence 54
No 9
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=2.4e-42 Score=325.98 Aligned_cols=265 Identities=20% Similarity=0.248 Sum_probs=223.3
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcchH---HHHHHHHHHHhhCCCceEecC----CCceEEEEeCCCCCCEE
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFEEY---ETSQLVRSELDSLGIEYTWPV----AKTGIVASVGSGGEPWF 113 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~---~~~~~l~~~l~~~G~~~~~~~----~~~nvia~~~~~~~~~i 113 (324)
.+++.++++... +++++++++|++|||++++|. ++++||.++|+++|++++... .++|++++++++++|+|
T Consensus 25 ~~~~~~~~~~~~--~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~~~~i 102 (410)
T PRK06133 25 DAELLAAAQQEQ--PAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTGKRRI 102 (410)
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCCCceE
Confidence 456888888877 999999999999999997654 799999999999999987632 36799999976545899
Q ss_pred EEEEecccCCCCC-CCCCccccccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHH
Q 020605 114 GLRAEMDALPLQE-MVEWEHKSKNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMI 188 (324)
Q Consensus 114 ~l~~H~DtVp~~~-~~~~~~~~~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~ 188 (324)
+|+||+||||++. |...||. .+||++|||| +|++++++|.+++.|++.+..++++|.|+|++|||. +.|++.++
T Consensus 103 ll~~H~D~Vp~~~~w~~~Pf~-~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~ 181 (410)
T PRK06133 103 MLIAHMDTVYLPGMLAKQPFR-IDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELI 181 (410)
T ss_pred EEEeecCccCCCCccCCCCEE-EECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHH
Confidence 9999999999854 2333675 5689999999 489999999999999988777789999999999995 46999999
Q ss_pred HccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCC-CCCCCCCHHHHHHHHHHHHHHhhcccCC
Q 020605 189 KEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAA-MPQDTRDPVLAASFAILTLQHIVSRETD 267 (324)
Q Consensus 189 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~-~p~~g~nAi~~l~~~l~~l~~~~~~~~~ 267 (324)
++.. .+.|++++.+++ .+.+.+.. .++|..+++++++|+++|+| .|+.|.||+..+++++..|+++..
T Consensus 182 ~~~~-~~~d~~i~~ep~--~~~~~v~~----~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~---- 250 (410)
T PRK06133 182 AELA-AQHDVVFSCEPG--RAKDALTL----ATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGD---- 250 (410)
T ss_pred HHHh-ccCCEEEEeCCC--CCCCCEEE----eccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccC----
Confidence 7743 368999987753 23233322 24789999999999999986 799999999999999999987632
Q ss_pred CCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 268 PLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 268 ~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
+....+++++.++||...|+||++|++.+|+|++|.++.+++.+.|++++++
T Consensus 251 ~~~~~t~~~~~i~gG~~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~ 302 (410)
T PRK06133 251 PAKGTTLNWTVAKAGTNRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKN 302 (410)
T ss_pred CCCCeEEEeeEEECCCCCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 2235789999999999999999999999999999999999999999999876
No 10
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=326.45 Aligned_cols=265 Identities=20% Similarity=0.200 Sum_probs=221.9
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcch---HHHHHHHHHHHhhCCCceEecC-----------------CCce
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFEE---YETSQLVRSELDSLGIEYTWPV-----------------AKTG 100 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e---~~~~~~l~~~l~~~G~~~~~~~-----------------~~~n 100 (324)
..++.+++++.. +++++.+++|+++||+++++ .++++||.++|+++|++++..+ .++|
T Consensus 5 ~~~~~~~~~~~~--~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~n 82 (402)
T PRK07338 5 ERAVLDLIDDRQ--APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHhhhH--HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCe
Confidence 556778888777 99999999999999998764 5789999999999999887521 1269
Q ss_pred EEEEeCCCCCCEEEEEEecccCCCCCCCCCcccc---ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEE
Q 020605 101 IVASVGSGGEPWFGLRAEMDALPLQEMVEWEHKS---KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVF 174 (324)
Q Consensus 101 via~~~~~~~~~i~l~~H~DtVp~~~~~~~~~~~---~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~ 174 (324)
++++++++.+++|+|+|||||||++. .||.. ++||++|||| |||+++++|.|+++|++.+..++++|.|+|
T Consensus 83 l~a~~~~~~~~~lll~gH~DvVp~~~---~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~ 159 (402)
T PRK07338 83 LHVSVRPEAPRQVLLTGHMDTVFPAD---HPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLI 159 (402)
T ss_pred EEEEECCCCCccEEEEeecCccCCCC---CcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 99999654346899999999999853 67864 5689999999 599999999999999887767788999999
Q ss_pred eccCCCc-ccHHHHHHccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCC-CCCCCCHHHHHH
Q 020605 175 QPGEEGY-GGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAM-PQDTRDPVLAAS 252 (324)
Q Consensus 175 ~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~-p~~g~nAi~~l~ 252 (324)
++|||.+ .|++.+++++. .+.+++++.++ ..+.+.+.. .++|..+++|+++|+++|+|. |+.|.||+..++
T Consensus 160 ~~dEE~g~~g~~~~~~~~~-~~~~~~i~~ep--~~~~~~v~~----~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~ 232 (402)
T PRK07338 160 NPDEEIGSPASAPLLAELA-RGKHAALTYEP--ALPDGTLAG----ARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAA 232 (402)
T ss_pred ECCcccCChhhHHHHHHHh-ccCcEEEEecC--CCCCCcEEe----ecceeEEEEEEEEeEcccCCCCcccCccHHHHHH
Confidence 9999954 68888888754 35688888765 323343322 236899999999999999995 899999999999
Q ss_pred HHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHH
Q 020605 253 FAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEV 321 (324)
Q Consensus 253 ~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a 321 (324)
+++..|+++... ....++|++.|+||...|+||++|++++|+|+.|.++.+++.++|++++++.+
T Consensus 233 ~~i~~l~~l~~~----~~~~t~~vg~i~gG~~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~ 297 (402)
T PRK07338 233 ELALALHALNGQ----RDGVTVNVAKIDGGGPLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVN 297 (402)
T ss_pred HHHHHHHhhhcc----CCCcEEEEEEEecCCCCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhccc
Confidence 999999876432 23468999999999999999999999999999999999999999999998764
No 11
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=5.8e-42 Score=324.56 Aligned_cols=265 Identities=15% Similarity=0.076 Sum_probs=219.7
Q ss_pred HHHhccCcchHHHHHHHHHHhccCCCCC---cchHHHHHHHHHHHhhCCCceEec---CCCceEEEEeCCC-C--CCEEE
Q 020605 44 LLDSAREPEFFEWMRRIRRRIHENPELG---FEEYETSQLVRSELDSLGIEYTWP---VAKTGIVASVGSG-G--EPWFG 114 (324)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~-~--~~~i~ 114 (324)
+.++++... +++++++++|++|||++ ++|.++++||+++|+++|++++.. ++++|++++++++ + +|+|+
T Consensus 4 ~~~~i~~~~--~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~ll 81 (421)
T PRK08596 4 LLEQIELRK--DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLI 81 (421)
T ss_pred HHHHHHhhH--HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEE
Confidence 556677666 89999999999999998 468889999999999999998762 4578999999653 2 36899
Q ss_pred EEEecccCCCCCCCCC---cccc-ccCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHH
Q 020605 115 LRAEMDALPLQEMVEW---EHKS-KNNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYY 186 (324)
Q Consensus 115 l~~H~DtVp~~~~~~~---~~~~-~~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~ 186 (324)
|+||+||||+++.+.| ||.. .+||++||||+ ||++++++.|++++++.+..++++|.|+|++|||. +.|+.+
T Consensus 82 l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~~ 161 (421)
T PRK08596 82 INGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTLQ 161 (421)
T ss_pred EeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHHH
Confidence 9999999999876667 5654 46999999994 89999999999999998878899999999999995 469999
Q ss_pred HHHccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEec----------CCCCCCCCCCCCHHHHHHHHHH
Q 020605 187 MIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGK----------GGHAAMPQDTRDPVLAASFAIL 256 (324)
Q Consensus 187 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~----------~~Hs~~p~~g~nAi~~l~~~l~ 256 (324)
+++++. ..|++++.+++... + ..++|..+++++++|+ .+|++.|+.|.|||..+++++.
T Consensus 162 ~~~~~~--~~d~~i~~ep~~~~----~-----~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~ 230 (421)
T PRK08596 162 CCERGY--DADFAVVVDTSDLH----M-----QGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQ 230 (421)
T ss_pred HHhcCC--CCCEEEECCCCCCc----c-----ccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHH
Confidence 999875 57899887653211 1 1235777777878775 3799999999999999999999
Q ss_pred HHHHhhcc-----cC--CCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHH
Q 020605 257 TLQHIVSR-----ET--DPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEV 321 (324)
Q Consensus 257 ~l~~~~~~-----~~--~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a 321 (324)
.|+++... .. .+....++|++.|+||...|+||++|++.+|+|++|+++.+++.++|++++++.+
T Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~ 302 (421)
T PRK08596 231 SLQELERHWAVMKSYPGFPPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVA 302 (421)
T ss_pred HHHHHHHHHhhcccCccCCCCCcceeeeeeeCCCCCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHH
Confidence 99876421 11 1124578999999999999999999999999999999999999999999998753
No 12
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=6.2e-42 Score=320.91 Aligned_cols=257 Identities=19% Similarity=0.189 Sum_probs=212.4
Q ss_pred HHHHHHHHHhccCCCCCcch-------HHHHHHHHHHHhhCCCceEec-----CCCceEEEEeCCCCCCEEEEEEecccC
Q 020605 55 EWMRRIRRRIHENPELGFEE-------YETSQLVRSELDSLGIEYTWP-----VAKTGIVASVGSGGEPWFGLRAEMDAL 122 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e-------~~~~~~l~~~l~~~G~~~~~~-----~~~~nvia~~~~~~~~~i~l~~H~DtV 122 (324)
+++++++++|++|||+|++| .++++||.++|+++|++++.. .+++|+++++++++ ++|+|+||||||
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~g~~~-~~il~~~H~Dvv 83 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASLGSGE-GGLLLAGHTDTV 83 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEeCCCC-CeEEEEeeecee
Confidence 68999999999999999875 569999999999999988653 24679999995433 689999999999
Q ss_pred CCCC--CCCCcccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccCcCC
Q 020605 123 PLQE--MVEWEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGAVDK 195 (324)
Q Consensus 123 p~~~--~~~~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~~~~ 195 (324)
|+++ |+..||.. ++||++|||| |||+++++|.+++.|++.+ ++++|.|+|++|||. +.|++++++++.+ .
T Consensus 84 p~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~g~~G~~~~~~~~~~-~ 160 (383)
T PRK05111 84 PFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLTK--LKKPLYILATADEETSMAGARAFAEATAI-R 160 (383)
T ss_pred cCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhcC--CCCCeEEEEEeccccCcccHHHHHhcCCC-C
Confidence 9854 33447874 5689999999 5999999999999998653 678999999999994 4699999988654 3
Q ss_pred cceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcc----cCCC---
Q 020605 196 FQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSR----ETDP--- 268 (324)
Q Consensus 196 ~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~----~~~~--- 268 (324)
.|++++.++ ++... ...++|..+++|+++|+++|+|.|+.|.|||..+++++.+++.+... ...+
T Consensus 161 ~d~~i~~ep-----~~~~~---~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~ 232 (383)
T PRK05111 161 PDCAIIGEP-----TSLKP---VRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNPAFT 232 (383)
T ss_pred CCEEEEcCC-----CCCce---eecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCccCC
Confidence 588876443 32211 12347999999999999999999999999999999999999876421 1111
Q ss_pred CCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHhh
Q 020605 269 LEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVAY 323 (324)
Q Consensus 269 ~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~~ 323 (324)
...+++|++.|+||...|+||++|++.+|+|++|.++.+++.+.|++++++.+..
T Consensus 233 ~~~~t~~i~~i~gg~~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~ 287 (383)
T PRK05111 233 VPYPTLNLGHIHGGDAPNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSER 287 (383)
T ss_pred CCCCceeEeeeecCCcCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 2357899999999999999999999999999999999999999999999887543
No 13
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=1e-41 Score=320.91 Aligned_cols=266 Identities=16% Similarity=0.161 Sum_probs=221.1
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecc
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMD 120 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~D 120 (324)
.+++.++++..+ +++++++++|+++||+|++|.++++||.++|+++|+++...+...|+++++++++ |+|+|++|+|
T Consensus 3 ~~~~~~~~~~~~--~~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~~-~~i~~~~H~D 79 (399)
T PRK13004 3 FKLILMLAEKYK--ADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHGK-KLIAFDAHID 79 (399)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCCC-cEEEEEeccC
Confidence 356777888776 8999999999999999999999999999999999998654344568999997654 8999999999
Q ss_pred cCCCCCCCCC---cccc-ccCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHHcc
Q 020605 121 ALPLQEMVEW---EHKS-KNNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIKEG 191 (324)
Q Consensus 121 tVp~~~~~~~---~~~~-~~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~ 191 (324)
|||+++.+.| ||.. .+||++||||+ |++++++|.|++.|++.+..++++|.|+|++|||.+ .|++++++++
T Consensus 80 tVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~ 159 (399)
T PRK13004 80 TVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEED 159 (399)
T ss_pred ccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhc
Confidence 9998766667 4543 45899999994 899999999999999988778899999999999943 4677888764
Q ss_pred CcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcc--cCCCC
Q 020605 192 AVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSR--ETDPL 269 (324)
Q Consensus 192 ~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~--~~~~~ 269 (324)
.+ .+|++++.+++. ..+. ..++|..+++|+++|+++|+|.|+.|.||+..+++++..|+.+... .....
T Consensus 160 ~~-~~d~~i~~e~~~----~~i~----~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~ 230 (399)
T PRK13004 160 KI-KPDFVVITEPTD----LNIY----RGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLKEDPFL 230 (399)
T ss_pred CC-CCCEEEEccCCC----CceE----EecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccccCCcC
Confidence 44 579998866421 1121 2347999999999999999999999999999999999999887543 22223
Q ss_pred CCceEEEEEEEcC-CCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHH
Q 020605 270 EARVVTVGFIDAG-QAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKL 318 (324)
Q Consensus 270 ~~~~~~v~~i~gg-~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~ 318 (324)
...+++++.|.+| .+.|+||++|++++|+|++|.++.+++.+.|++++.
T Consensus 231 ~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~ 280 (399)
T PRK13004 231 GKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWESVLAEIRALPA 280 (399)
T ss_pred CCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 4568899999876 599999999999999999999999999999998843
No 14
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=5.8e-42 Score=320.23 Aligned_cols=256 Identities=20% Similarity=0.234 Sum_probs=212.7
Q ss_pred HHHHHhccCCC---CCcchHHHHHHHHHHHhhCCCceEec---CCCc----eEEEEeCCC-CCCEEEEEEecccCCCCCC
Q 020605 59 RIRRRIHENPE---LGFEEYETSQLVRSELDSLGIEYTWP---VAKT----GIVASVGSG-GEPWFGLRAEMDALPLQEM 127 (324)
Q Consensus 59 ~~~~~l~~ips---~s~~e~~~~~~l~~~l~~~G~~~~~~---~~~~----nvia~~~~~-~~~~i~l~~H~DtVp~~~~ 127 (324)
+++++|++||| ++++|.++++||.++|+++|++++.. .... |+++.+.+. ++|+|+|+|||||||+++.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 57899999999 78899999999999999999998652 1222 355555443 4589999999999999766
Q ss_pred CCC---cccc-ccCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccCcCCcceE
Q 020605 128 VEW---EHKS-KNNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGAVDKFQGM 199 (324)
Q Consensus 128 ~~~---~~~~-~~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~~~~~d~~ 199 (324)
.+| ||.. .++|++||||+ |++++++|.+++.|++.+..++++|.|+|+++||. +.|++.+++++.+.+.|++
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~~d~~ 161 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGYFKDADGV 161 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCCCCCCCEE
Confidence 666 6664 46899999993 89999999999999988777899999999999994 5699999998876668998
Q ss_pred EEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccC------CCCCCce
Q 020605 200 FGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRET------DPLEARV 273 (324)
Q Consensus 200 i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~------~~~~~~~ 273 (324)
++.+++. .+.+. ..++|..+++|+++|+++|+|.|+.|.|||..+++++.+|+++..... .....++
T Consensus 162 i~~~~~~---~~~v~----~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t 234 (375)
T TIGR01910 162 LIPEPSG---GDNIV----IGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGPIT 234 (375)
T ss_pred EECCCCC---CCceE----EEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccCCCcc
Confidence 8765321 12222 234799999999999999999999999999999999999987753211 1234579
Q ss_pred EEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHH
Q 020605 274 VTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEV 321 (324)
Q Consensus 274 ~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a 321 (324)
+|++.|+||...|+||++|++++|+|+.|.++++++.++|++++++.+
T Consensus 235 ~~i~~i~gG~~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~ 282 (375)
T TIGR01910 235 FNPGVIKGGDWVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALS 282 (375)
T ss_pred ccceeEECCCCcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998765
No 15
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=1.1e-41 Score=316.99 Aligned_cols=250 Identities=22% Similarity=0.320 Sum_probs=208.6
Q ss_pred HHHHhccCCCCCcch-HHHHHHHHHHHhhCCCceEecC-----CCceEEEEeCCCCCCEEEEEEecccCCCCCCCCC---
Q 020605 60 IRRRIHENPELGFEE-YETSQLVRSELDSLGIEYTWPV-----AKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEW--- 130 (324)
Q Consensus 60 ~~~~l~~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~~-----~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~--- 130 (324)
++++|++|||+++++ .++++||.++|+++|++++... .++|+++.+++.++|+|+|+||+||||+++ +.|
T Consensus 2 ~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~-~~w~~~ 80 (364)
T TIGR01892 2 ILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSGAGGLALSGHTDVVPYDD-AAWTRD 80 (364)
T ss_pred hHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCCCCeEEEEcccccccCCC-CcCCCC
Confidence 588999999999865 7999999999999999987632 368999999664458999999999999865 355
Q ss_pred cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccCcCCcceEEEeccC
Q 020605 131 EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGAVDKFQGMFGIHIS 205 (324)
Q Consensus 131 ~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~~~~~d~~i~~~~~ 205 (324)
||.. .++|++|||| +||+++++|.+++.|++.+ ++++|.|+|++|||. +.|++++++++.+ ..|++++.+
T Consensus 81 Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~g~~G~~~~~~~~~~-~~d~~i~~e-- 155 (364)
T TIGR01892 81 PFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQ--LKKPLHLALTADEEVGCTGAPKMIEAGAG-RPRHAIIGE-- 155 (364)
T ss_pred CCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcC--cCCCEEEEEEeccccCCcCHHHHHHhcCC-CCCEEEECC--
Confidence 6763 5689999999 6999999999999998753 678999999999994 4799999998753 578887644
Q ss_pred CCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccC-----CC--CCCceEEEEE
Q 020605 206 PVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRET-----DP--LEARVVTVGF 278 (324)
Q Consensus 206 ~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~-----~~--~~~~~~~v~~ 278 (324)
|++..... .++|..+++|+++|+++|++.|+.|.|||..+++++.+|+++..... .+ ...+++|++.
T Consensus 156 ---p~~~~~~~---~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (364)
T TIGR01892 156 ---PTRLIPVR---AHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNIGV 229 (364)
T ss_pred ---CCCceeEE---eeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCceEEEee
Confidence 33432221 34799999999999999999999999999999999999987643211 11 1247999999
Q ss_pred EEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHH
Q 020605 279 IDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEV 321 (324)
Q Consensus 279 i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a 321 (324)
|+||...|+||++|++.+|+|++|.++.+++.+.|+++++..+
T Consensus 230 i~gg~~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~ 272 (364)
T TIGR01892 230 IQGGKAVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALV 272 (364)
T ss_pred eecCCCCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 16
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=1.5e-41 Score=319.48 Aligned_cols=265 Identities=16% Similarity=0.163 Sum_probs=217.9
Q ss_pred HHHHhccCcchHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccC
Q 020605 43 ELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDAL 122 (324)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtV 122 (324)
++.+++++.+ +++++++++|+++||++++|.++++||.++|+++|+++.......|+++.++.+ +|+|+|+||+|||
T Consensus 3 ~~~~~~~~~~--~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~g~~-~~~l~l~~H~DtV 79 (395)
T TIGR03526 3 QIKSEAEKYR--GDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTV 79 (395)
T ss_pred hHHHHHHHHH--HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEeCCC-CCEEEEEeecccc
Confidence 4566777766 899999999999999999999999999999999999853222345799998543 3899999999999
Q ss_pred CCCCCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHHccCc
Q 020605 123 PLQEMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIKEGAV 193 (324)
Q Consensus 123 p~~~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~ 193 (324)
|+++.+.| ||.. .+||++|||| |||+++++|.|++.+++.+..++.++.|++++|||++ .|+..+++++.+
T Consensus 80 p~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03526 80 GIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDKI 159 (395)
T ss_pred CCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccCC
Confidence 99877778 5554 4589999999 5999999999999999887667789999999999943 356777776544
Q ss_pred CCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhccc-CCC-CCC
Q 020605 194 DKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRE-TDP-LEA 271 (324)
Q Consensus 194 ~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~-~~~-~~~ 271 (324)
..|++++.+++. ..+. ..++|..+++|+++|+++|+|.|+.|.|||..+++++.+|+++.... .++ .+.
T Consensus 160 -~~d~~i~~ep~~----~~i~----~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~ 230 (395)
T TIGR03526 160 -KPEFVVITEPTD----MNIY----RGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGK 230 (395)
T ss_pred -CCCEEEecCCCC----ceEE----EEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhcCCcccCc
Confidence 478888755421 1221 23479999999999999999999999999999999999998875322 122 245
Q ss_pred ceEEEEEEEcCC-CCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 272 RVVTVGFIDAGQ-AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 272 ~~~~v~~i~gg~-~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
.++|++.|++|. ..|+||++|++++|+|++|.++.+++.+.|+++++.
T Consensus 231 ~~~~v~~i~~g~~~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~ 279 (395)
T TIGR03526 231 GTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAV 279 (395)
T ss_pred cceeeeeeecCCCCCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 799999999875 899999999999999999999999999999998764
No 17
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=4e-41 Score=314.62 Aligned_cols=261 Identities=20% Similarity=0.225 Sum_probs=214.7
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec--CCCceEEEEeCCCCCCEEEEEEecccCCCCCCCCC--
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP--VAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEW-- 130 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~-- 130 (324)
.++++++++|++|||++++|.++++|+.++|+++|++++.. .+.+|++++++. ++|+|+|+||+||||+++.+.|
T Consensus 2 ~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~g~-~~~~i~l~~H~D~Vp~g~~~~w~~ 80 (375)
T PRK13009 2 SDVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARRGT-EGPHLCFAGHTDVVPPGDLEAWTS 80 (375)
T ss_pred chHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEecC-CCCEEEEEeecccCCCCCcccCCC
Confidence 36789999999999999999999999999999999998752 346799999844 4699999999999999876677
Q ss_pred -cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHHccC--cCCcceEEE
Q 020605 131 -EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIKEGA--VDKFQGMFG 201 (324)
Q Consensus 131 -~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~--~~~~d~~i~ 201 (324)
||.. .+||++|||| +||++++++.|++.+++.+..++++|.|+|++|||++ .|++.+++... ...+|++++
T Consensus 81 ~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~ 160 (375)
T PRK13009 81 PPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIV 160 (375)
T ss_pred CCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEE
Confidence 6664 4689999999 3899999999999999887778899999999999954 48888875421 125788887
Q ss_pred eccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccC-CCCCCceEEEEEEE
Q 020605 202 IHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRET-DPLEARVVTVGFID 280 (324)
Q Consensus 202 ~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~-~~~~~~~~~v~~i~ 280 (324)
.++....+.+.. . ...++|..+++|+++|+++|+|.|+.|.||+..+++++.+|+....+.. ..+.+.+++++.|+
T Consensus 161 ~ep~~~~~~~~~-i--~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~i~ 237 (375)
T PRK13009 161 GEPTSTERLGDV-I--KNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPPTSLQITNID 237 (375)
T ss_pred cCCCcccCCCCe-E--EEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCCCccCCCceEEEEEEe
Confidence 765432222211 1 1234789999999999999999999999999999999999987643222 22345689999999
Q ss_pred cCC-CCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 281 AGQ-AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 281 gg~-~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
||. ..|+||++|++++|+|++|.++.+++.++|++.+++
T Consensus 238 ~G~~~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~ 277 (375)
T PRK13009 238 AGTGATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDK 277 (375)
T ss_pred cCCCCCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 886 789999999999999999999999999999998874
No 18
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=2.6e-41 Score=317.86 Aligned_cols=265 Identities=16% Similarity=0.184 Sum_probs=216.3
Q ss_pred HHHHhccCcchHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccC
Q 020605 43 ELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDAL 122 (324)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtV 122 (324)
++.+++++.+ +++++++++|+++||++++|.++++||.++|+++|+++.......|+++.++.+ +|+|+|+||+|||
T Consensus 3 ~~~~~i~~~~--~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~g~~-~~~l~l~~H~DtV 79 (395)
T TIGR03320 3 QIKSEAKKYR--GDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTV 79 (395)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEeCCC-CcEEEEEeccccc
Confidence 4566677666 899999999999999999999999999999999999743223345799998543 4899999999999
Q ss_pred CCCCCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCccc--HHHHHHccCc
Q 020605 123 PLQEMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGG--AYYMIKEGAV 193 (324)
Q Consensus 123 p~~~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G--~~~~~~~~~~ 193 (324)
|+++...| ||.. .+||++|||| |||++++++.|+++|++.+..+++++.|++++|||.++| ...++++..+
T Consensus 80 p~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03320 80 GIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDGI 159 (395)
T ss_pred CCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcCC
Confidence 99877777 5654 4689999999 599999999999999988766788999999999995443 4566655333
Q ss_pred CCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhccc-CCC-CCC
Q 020605 194 DKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRE-TDP-LEA 271 (324)
Q Consensus 194 ~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~-~~~-~~~ 271 (324)
.+|++++.+++. ..+. ..++|..+++++++|+++|+|.|+.|.||+..+++++..|+++.... .++ .+.
T Consensus 160 -~~d~~iv~ep~~----~~i~----~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~ 230 (395)
T TIGR03320 160 -KPEFVVITEPTD----MNIY----RGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGK 230 (395)
T ss_pred -CCCEEEEcCCCc----cceE----EecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCcccCc
Confidence 579988865421 1121 23479999999999999999999999999999999999998875322 122 235
Q ss_pred ceEEEEEEEcCC-CCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 272 RVVTVGFIDAGQ-AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 272 ~~~~v~~i~gg~-~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
.++|++.|.+|. ..|+||++|++++|+|++|.++.+++.+.|++++..
T Consensus 231 ~t~~v~~i~~g~~~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~ 279 (395)
T TIGR03320 231 GTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAV 279 (395)
T ss_pred CceeeeeeecCCCCcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 689999999875 899999999999999999999999999999998754
No 19
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2.2e-41 Score=317.38 Aligned_cols=254 Identities=22% Similarity=0.268 Sum_probs=209.7
Q ss_pred HHHHHHHHHhccCCCCCcch-HHHHHHHHHHHhhCCCceEec----CCCceEEEEeCCCCCCEEEEEEecccCCCCCCCC
Q 020605 55 EWMRRIRRRIHENPELGFEE-YETSQLVRSELDSLGIEYTWP----VAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVE 129 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e-~~~~~~l~~~l~~~G~~~~~~----~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~ 129 (324)
.++++++++|++|||+|++| .++++|+.++|+++|+++++. ..++|++++++++++|+|+|+||+||||+++ ..
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~-~~ 82 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPADRGGIVLSGHTDVVPVDG-QA 82 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCCCCCeEEEEeecccccCCC-CC
Confidence 57899999999999999887 499999999999999998652 2457999999765568999999999999864 34
Q ss_pred C---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccC--cCCcceE
Q 020605 130 W---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGA--VDKFQGM 199 (324)
Q Consensus 130 ~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~--~~~~d~~ 199 (324)
| ||.. .+||++|||| +||++++++.|++.|++.+ ++++|.|+|++|||. +.|++++++... ...+|++
T Consensus 83 W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~ 160 (385)
T PRK07522 83 WTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAAP--LRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGC 160 (385)
T ss_pred CCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhCC--CCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEE
Confidence 5 6765 3599999999 4999999999999998763 678999999999994 479999987532 1246888
Q ss_pred EEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCC--C------CCC
Q 020605 200 FGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETD--P------LEA 271 (324)
Q Consensus 200 i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~--~------~~~ 271 (324)
+..+ |++. .....++|..+++|+++|+++|+|.|+.|.||+..+++++.+|+++..+... + ...
T Consensus 161 i~~e-----p~~~---~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 232 (385)
T PRK07522 161 IVGE-----PTSM---RPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDALFDPPY 232 (385)
T ss_pred EEcc-----CCCC---eeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCc
Confidence 7644 3321 1112347899999999999999999999999999999999999876432211 1 113
Q ss_pred ceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 272 RVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 272 ~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
+++|++.|+||...|+||++|++.+|+|++|.++.+++.+.|++.+++
T Consensus 233 ~t~~i~~i~gG~~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~ 280 (385)
T PRK07522 233 STLQTGTIQGGTALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEA 280 (385)
T ss_pred ceeEEeeeecCccccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999877
No 20
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=3.3e-41 Score=317.73 Aligned_cols=263 Identities=22% Similarity=0.192 Sum_probs=215.2
Q ss_pred HHHHHHHHHhccCCCCCc-----chHHHHHHHHHHHhhCCCc-eEec---C----C--CceEEEEeCCC-CCCEEEEEEe
Q 020605 55 EWMRRIRRRIHENPELGF-----EEYETSQLVRSELDSLGIE-YTWP---V----A--KTGIVASVGSG-GEPWFGLRAE 118 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~-----~e~~~~~~l~~~l~~~G~~-~~~~---~----~--~~nvia~~~~~-~~~~i~l~~H 118 (324)
+++++++++|++|||+++ .|.++++||.++|+++|++ ++.. + + ++|+++.++++ ++++|+|+||
T Consensus 5 ~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll~~H 84 (400)
T PRK13983 5 DEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWIISH 84 (400)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEEEee
Confidence 889999999999999984 4889999999999999998 7642 1 1 58999999664 3479999999
Q ss_pred cccCCCCCCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHH
Q 020605 119 MDALPLQEMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIK 189 (324)
Q Consensus 119 ~DtVp~~~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~ 189 (324)
+||||+++.+.| ||.. .++|++|||| +|+++++++.|++.|++.+..++++|.|+|++|||.+ .|+.++++
T Consensus 85 ~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~~~~ 164 (400)
T PRK13983 85 MDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQYLLK 164 (400)
T ss_pred ccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHHHHh
Confidence 999999876666 6654 4589999999 4899999999999999888789999999999999954 38999998
Q ss_pred c--cCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHH-hhccc-
Q 020605 190 E--GAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQH-IVSRE- 265 (324)
Q Consensus 190 ~--~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~-~~~~~- 265 (324)
. +.+.+.|++++.+ .+.|++.... ..++|..+++|+++|+++|+|.|+.|.||+..+++++..+++ +....
T Consensus 165 ~~~~~~~~~d~~i~~~--~~~~~~~~i~---~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~ 239 (400)
T PRK13983 165 KHPELFKKDDLILVPD--AGNPDGSFIE---IAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEKFN 239 (400)
T ss_pred hcccccCCCCEEEEec--CCCCCCceeE---EeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 7 5555678887643 3556654221 234799999999999999999999999999999999999987 32111
Q ss_pred -CCC---CCCceEEEEEEEcC-CCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 266 -TDP---LEARVVTVGFIDAG-QAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 266 -~~~---~~~~~~~v~~i~gg-~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
..+ ....+++++.+.+| ...|+||++|++++|+|++|.++.+++.+.|++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~ 301 (400)
T PRK13983 240 AKDPLFDPPYSTFEPTKKEANVDNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEE 301 (400)
T ss_pred ccccccCCCCcccccceeecCCcCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 111 12346778888877 5899999999999999999999999999999999987643
No 21
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=3.4e-41 Score=317.57 Aligned_cols=262 Identities=16% Similarity=0.111 Sum_probs=214.2
Q ss_pred HHHHHHHHHhccCCCCCcc--hHHHHHHHHHHHhhCCCceEe---cCCCceEEEEeCCC-C-CCEEEEEEecccCCCCC-
Q 020605 55 EWMRRIRRRIHENPELGFE--EYETSQLVRSELDSLGIEYTW---PVAKTGIVASVGSG-G-EPWFGLRAEMDALPLQE- 126 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~--e~~~~~~l~~~l~~~G~~~~~---~~~~~nvia~~~~~-~-~~~i~l~~H~DtVp~~~- 126 (324)
+++++++++|++|||+++. |.++++|+.++|+++|++++. ..+++|++++++++ + .|+|+|+|||||||+++
T Consensus 9 ~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~ 88 (400)
T TIGR01880 9 DIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFRE 88 (400)
T ss_pred HHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCcc
Confidence 7889999999999999764 678999999999999998764 23678999999653 3 38999999999999864
Q ss_pred -CCCCccccc--cCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHHccCcCCcce
Q 020605 127 -MVEWEHKSK--NNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIKEGAVDKFQG 198 (324)
Q Consensus 127 -~~~~~~~~~--~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~~~~d~ 198 (324)
|+.+||... +||++||||+ |+++++++.|++.|++.+..++++|.|+|++|||.+ .|++.+++++.+...|+
T Consensus 89 ~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~~~ 168 (400)
T TIGR01880 89 HWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKALNL 168 (400)
T ss_pred cCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCCce
Confidence 334578753 5899999994 899999999999999988788999999999999954 39999998876656678
Q ss_pred EEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcc---------cCCCC
Q 020605 199 MFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSR---------ETDPL 269 (324)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~---------~~~~~ 269 (324)
.++++.+-..|++.. ..+..++|..+++|+++|+++|+|.|. +.||+..+++++..|+++... .....
T Consensus 169 ~~~~d~g~~~~~~~~--~i~~~~kG~~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 245 (400)
T TIGR01880 169 GFALDEGLASPDDVY--RVFYAERVPWWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIG 245 (400)
T ss_pred EEEEcCCCccccccc--ceeEEeeEEEEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCcccccc
Confidence 887764323344422 223456899999999999999999864 469999999999988765211 11111
Q ss_pred CCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 270 EARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 270 ~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
..+++|++.|+||...|+||++|++.+|+|++|.++.+++.+.|++++++
T Consensus 246 ~~~t~~v~~i~gG~~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~ 295 (400)
T TIGR01880 246 DVTSVNLTKLKGGVQSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCAD 295 (400)
T ss_pred ccceeecceeccCCcCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhc
Confidence 24799999999999999999999999999999999999999999999876
No 22
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=2.5e-41 Score=315.25 Aligned_cols=250 Identities=18% Similarity=0.176 Sum_probs=200.3
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHHHhhCCCc-eEecCCCceEEEEeCCCCCCEEEEEEecccCCCCCC--CCCc---c-
Q 020605 60 IRRRIHENPELGFEEYETSQLVRSELDSLGIE-YTWPVAKTGIVASVGSGGEPWFGLRAEMDALPLQEM--VEWE---H- 132 (324)
Q Consensus 60 ~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~--~~~~---~- 132 (324)
++++|++|||++++|.++++|+.++|+++|++ ++....++|++++++++++++|+|+|||||||+++. ..|. |
T Consensus 1 ll~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~ 80 (373)
T TIGR01900 1 LLQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFGDNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPGDS 80 (373)
T ss_pred ChHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEECCEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCccc
Confidence 36899999999999999999999999999653 222223458999986544689999999999998642 3452 2
Q ss_pred -------c-cccCCceeecc---chHHHHHHHHHHHHHHh--cCCCCCceEEEEEeccCCCc---ccHHHHHHccC-cCC
Q 020605 133 -------K-SKNNGKMHGCG---HDVHTTILLGAARLLKH--RMDRLKGTVKLVFQPGEEGY---GGAYYMIKEGA-VDK 195 (324)
Q Consensus 133 -------~-~~~~g~~~grG---~kg~~a~~l~a~~~l~~--~~~~~~~~i~~~~~~dEE~~---~G~~~~~~~~~-~~~ 195 (324)
. .++||++|||| |||+++++|.|++.+.+ .+..++++|.|+|++|||.+ .|+..+++... +.+
T Consensus 81 ~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~ 160 (373)
T TIGR01900 81 LIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLA 160 (373)
T ss_pred ccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCccccc
Confidence 2 35689999999 48999999999999954 34467899999999999953 48999987642 125
Q ss_pred cceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccC--CC-CCCc
Q 020605 196 FQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRET--DP-LEAR 272 (324)
Q Consensus 196 ~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~--~~-~~~~ 272 (324)
.|++++.+++.. .+ ...++|..+++|+++|+++|+|.|+.|.|||..+++++.+|+++..... +. ....
T Consensus 161 ~d~~iv~Ept~~----~i----~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~ 232 (373)
T TIGR01900 161 ADFAIIGEPTGG----GI----EAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVNIDGLDYRE 232 (373)
T ss_pred CCEEEEECCCCC----cc----cccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhcccccccCCcccc
Confidence 788888664321 11 2345899999999999999999999999999999999999987653221 11 1246
Q ss_pred eEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHH
Q 020605 273 VVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVK 317 (324)
Q Consensus 273 ~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i 317 (324)
++|++.|+||.+.|+||++|++++|+|+.|.++.+++.+.|++++
T Consensus 233 t~~v~~I~GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~~~ 277 (373)
T TIGR01900 233 GLNATFCEGGKANNVIPDEARMHLNFRFAPDKDLAEAKALMMGAD 277 (373)
T ss_pred eEEEEEEeCCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999997654
No 23
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=4.6e-41 Score=313.62 Aligned_cols=258 Identities=22% Similarity=0.297 Sum_probs=211.0
Q ss_pred HHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec--CCCceEEEEeCCCCCCEEEEEEecccCCCCCCCCC---cc
Q 020605 58 RRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP--VAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEW---EH 132 (324)
Q Consensus 58 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~---~~ 132 (324)
++++++|++|||+|++|.++++|+.++|+++|++++.. ...+|+++++++ ++|+|+|+||+||||+++.+.| ||
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~ 80 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPF 80 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEecC-CCcEEEEEccccccCCCCccccccCCC
Confidence 57899999999999999999999999999999998753 346789998754 4599999999999999765566 67
Q ss_pred cc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHHccC--cCCcceEEEecc
Q 020605 133 KS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIKEGA--VDKFQGMFGIHI 204 (324)
Q Consensus 133 ~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~--~~~~d~~i~~~~ 204 (324)
.. .+||++|||| +||++++++.|++.+++.+..++++|.|+|++|||++ .|++.+++... ...+|++++.++
T Consensus 81 ~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 81 EPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred CcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 65 4689999999 4799999999999998887778899999999999954 48888775311 125799988775
Q ss_pred CCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccC-CCCCCceEEEEEEEcCC
Q 020605 205 SPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRET-DPLEARVVTVGFIDAGQ 283 (324)
Q Consensus 205 ~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~-~~~~~~~~~v~~i~gg~ 283 (324)
+...+.+.. ....++|..+++++++|+++|++.|+.|.||+..+++++..|++...... ....+.+++++.|+||.
T Consensus 161 ~~~~~~~~~---i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~t~~i~~i~~g~ 237 (370)
T TIGR01246 161 SSVKKLGDV---IKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAGT 237 (370)
T ss_pred CCcccCCce---EEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhccCCccCCCCceEeeeeecCC
Confidence 432222221 11234799999999999999999999999999999999999986642221 12345789999999986
Q ss_pred -CCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 284 -AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 284 -~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
..|+||++|++++|+|++|.++.+++.+.|++++++
T Consensus 238 ~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~ 274 (370)
T TIGR01246 238 GANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQ 274 (370)
T ss_pred CCCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998865
No 24
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=320.61 Aligned_cols=261 Identities=17% Similarity=0.167 Sum_probs=208.2
Q ss_pred HHHHHHHHHhccCCCCCcc-h--HHHHHHHHHHHhhCCCceEec--CCCceEEEEeCCCCCCEEEEEEecccCCCCCCCC
Q 020605 55 EWMRRIRRRIHENPELGFE-E--YETSQLVRSELDSLGIEYTWP--VAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVE 129 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~-e--~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~ 129 (324)
+++++++++|++|||++++ | .++++||.++|+++|++++.. .+++|++++++++.+|+|+|+||+||||+++.+.
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~ 81 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTKGHPVVYGEINVGAKKTLLIYNHYDVQPVDPLSE 81 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCEEEEEecccCCCCCcccc
Confidence 5788999999999999964 3 689999999999999998753 3578999999754468999999999999876555
Q ss_pred C---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC-CcccHHHHHHccC-cCCcceEE
Q 020605 130 W---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE-GYGGAYYMIKEGA-VDKFQGMF 200 (324)
Q Consensus 130 ~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~~~~~~~-~~~~d~~i 200 (324)
| ||.. .+||++|||| |||+++++|.|++.+++.+ .++.+|.|+|++||| ++.|+++++++.. .-++|+++
T Consensus 82 W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi 160 (436)
T PRK06446 82 WKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKLKADSVI 160 (436)
T ss_pred ccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHHHHHHHHHHhCCCEEE
Confidence 6 6764 4599999999 4999999999999887654 578899999999999 4568888876521 11468876
Q ss_pred EeccCCCCCCceEEeecccccceeeEEEEEEEe--cCCCCCCCCCCCCHHHHHHHHHHHHHHhhccc-------------
Q 020605 201 GIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKG--KGGHAAMPQDTRDPVLAASFAILTLQHIVSRE------------- 265 (324)
Q Consensus 201 ~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G--~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~------------- 265 (324)
+ +++...+.+..... ..++|..+++++++| +++|+|.|+.|.||+..+++++.+|.+.....
T Consensus 161 ~-E~~~~~~~~~~~i~--~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 237 (436)
T PRK06446 161 M-EGAGLDPKGRPQIV--LGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELT 237 (436)
T ss_pred E-CCCCccCCCCeEEE--EecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCC
Confidence 3 54332233321112 345899999999999 99999999999999999999999997542000
Q ss_pred ---------------------------C--------CCCCCceEEEEEEEcC----CCCcccCCeEEEEEEEecCChhhH
Q 020605 266 ---------------------------T--------DPLEARVVTVGFIDAG----QAGNIIPEIVRFGGTFRSLTTEGL 306 (324)
Q Consensus 266 ---------------------------~--------~~~~~~~~~v~~i~gg----~~~n~iP~~a~~~~d~R~~~~~~~ 306 (324)
. .....+++|++.+.|| ...|+||++|++++|+|++|.++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~ 317 (436)
T PRK06446 238 EEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYTGKGSKTIVPSRAFAKLDFRLVPNQDP 317 (436)
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeeccccCCCCCcEecCceEEEEEEEcCCCCCH
Confidence 0 0112478999999887 467999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020605 307 LYLEQRIKEVKLF 319 (324)
Q Consensus 307 ~~~~~~i~~~i~~ 319 (324)
+++.+.|++++++
T Consensus 318 ~~v~~~l~~~~~~ 330 (436)
T PRK06446 318 YKIFELLKKHLQK 330 (436)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 25
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-41 Score=320.98 Aligned_cols=273 Identities=15% Similarity=0.133 Sum_probs=215.7
Q ss_pred HHHHHhccCcchHHHHHHHHHHhccCCCCCc------chHHHHHHHHHHHhhCCCc-eEe--cCCCceEEEEeCCC-CCC
Q 020605 42 RELLDSAREPEFFEWMRRIRRRIHENPELGF------EEYETSQLVRSELDSLGIE-YTW--PVAKTGIVASVGSG-GEP 111 (324)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~------~e~~~~~~l~~~l~~~G~~-~~~--~~~~~nvia~~~~~-~~~ 111 (324)
.++.+++++++ +++++++++|++|||+++ +|.++++||+++|+++|++ ++. ..+++|+++++.++ ++|
T Consensus 3 ~~~~~~~~~~~--~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~~~~ 80 (456)
T PRK08201 3 QQVEAYLRERR--EAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAPGKP 80 (456)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 46777888877 999999999999999985 4678999999999999997 443 23567899988543 458
Q ss_pred EEEEEEecccCCCCCCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC-Cccc
Q 020605 112 WFGLRAEMDALPLQEMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE-GYGG 183 (324)
Q Consensus 112 ~i~l~~H~DtVp~~~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G 183 (324)
+|+|+||+||||+++...| ||.. .+||++|||| |||++++++.|++.+++.+..++++|.|+|++||| ++.|
T Consensus 81 ~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g 160 (456)
T PRK08201 81 TVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPN 160 (456)
T ss_pred EEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCcc
Confidence 9999999999999765556 6764 4689999999 49999999999999987666678899999999999 4568
Q ss_pred HHHHHHccCc-CCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCC--CCCCCC-CCCCHHHHHHHHHHHHH
Q 020605 184 AYYMIKEGAV-DKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGG--HAAMPQ-DTRDPVLAASFAILTLQ 259 (324)
Q Consensus 184 ~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~--Hs~~p~-~g~nAi~~l~~~l~~l~ 259 (324)
+..++++..- -+.|++++.+++...+... ..+.+++|..+++|+++|+++ |||.|. .+.|||..+++++.+|+
T Consensus 161 ~~~~l~~~~~~~~~d~~ii~e~~~~~~~~~---~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~ 237 (456)
T PRK08201 161 LDSFVEEEKDKLAADVVLISDTTLLGPGKP---AICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLH 237 (456)
T ss_pred HHHHHHhhHHhccCCEEEEeCCCcCCCCCE---EEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcC
Confidence 8888865310 1468888877543222211 122355899999999999998 999755 45799999999999997
Q ss_pred Hhhccc-----------------------------------CCC-------------CCCceEEEEEEEcCCC----Ccc
Q 020605 260 HIVSRE-----------------------------------TDP-------------LEARVVTVGFIDAGQA----GNI 287 (324)
Q Consensus 260 ~~~~~~-----------------------------------~~~-------------~~~~~~~v~~i~gg~~----~n~ 287 (324)
++.... ..+ ...+|+|++.|.||.. .|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~~~~~~Nv 317 (456)
T PRK08201 238 DEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQGEGTKTV 317 (456)
T ss_pred CCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCCCCCCCceE
Confidence 532100 000 0135899999988753 799
Q ss_pred cCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 288 IPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 288 iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
||++|++++|+|++|.++.+++.+.|++++++
T Consensus 318 VP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~ 349 (456)
T PRK08201 318 IPAEAHAKITCRLVPDQDPQEILDLIEAHLQA 349 (456)
T ss_pred ECcceEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876
No 26
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=9.4e-41 Score=320.70 Aligned_cols=259 Identities=15% Similarity=0.159 Sum_probs=210.4
Q ss_pred HHHHHHHHHhccCCCCC--cchHHHHHHHHHHHhhCCCceE---e---cCCCceEEEEeCCC-CCCEEEEEEecccCCCC
Q 020605 55 EWMRRIRRRIHENPELG--FEEYETSQLVRSELDSLGIEYT---W---PVAKTGIVASVGSG-GEPWFGLRAEMDALPLQ 125 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~~~---~---~~~~~nvia~~~~~-~~~~i~l~~H~DtVp~~ 125 (324)
+++++++++|++|||++ ++|.++++|+.++|+++|++++ . ...++|+++++++. ++++|+|+|||||||++
T Consensus 37 ~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~~~~lll~~H~DtVp~~ 116 (472)
T PRK09133 37 QAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDPKKPILLLAHMDVVEAK 116 (472)
T ss_pred HHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCCCCcEEEEeecccCCCC
Confidence 88999999999999998 6789999999999999999753 2 23568999999654 45899999999999985
Q ss_pred CCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC-Cc-ccHHHHHHccC-cCC
Q 020605 126 EMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE-GY-GGAYYMIKEGA-VDK 195 (324)
Q Consensus 126 ~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~-~G~~~~~~~~~-~~~ 195 (324)
+ +.| ||.. ++||++|||| |||+++++|.+++.|++.+..++++|.|+|++||| ++ .|++.++++.. .-+
T Consensus 117 ~-~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~ 195 (472)
T PRK09133 117 R-EDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDLID 195 (472)
T ss_pred h-hcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccchHHHHHHHHhhccC
Confidence 4 235 6664 4589999999 48999999999999998887788999999999999 55 58899887642 114
Q ss_pred cceEEEeccCC------CCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhccc----
Q 020605 196 FQGMFGIHISP------VLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRE---- 265 (324)
Q Consensus 196 ~d~~i~~~~~~------~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~---- 265 (324)
.|++++ +++. ++|+.. .....++|..+++|+++|+++|+|.|+ +.|||..++++|.+|+++..+.
T Consensus 196 ~~~~i~-e~~~~~~~~~gept~~---~i~~g~kG~~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~ 270 (472)
T PRK09133 196 AEFALN-EGGGGTLDEDGKPVLL---TVQAGEKTYADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLND 270 (472)
T ss_pred eEEEEE-CCCccccCCCCCceEE---EeeeecceeEEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCC
Confidence 677777 6543 333322 123456899999999999999999986 5899999999999997642100
Q ss_pred ------------------------------------------CCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCCh
Q 020605 266 ------------------------------------------TDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTT 303 (324)
Q Consensus 266 ------------------------------------------~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~ 303 (324)
..+...+++|++.|+||...|+||++|++++|+|++|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~~~NvVP~~a~~~lDiR~~p~ 350 (472)
T PRK09133 271 VTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGHAENALPQRATANVNCRIFPG 350 (472)
T ss_pred ccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCCcCccCCCceEEEEEEEeCCc
Confidence 00023578999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 020605 304 EGLLYLEQRIKEVKLF 319 (324)
Q Consensus 304 ~~~~~~~~~i~~~i~~ 319 (324)
++.+++.++|++++++
T Consensus 351 ~~~e~v~~~I~~~i~~ 366 (472)
T PRK09133 351 DTIEAVRATLKQVVAD 366 (472)
T ss_pred hhHHHHHHHHHHHhcC
Confidence 9999999999998754
No 27
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3.9e-40 Score=305.42 Aligned_cols=249 Identities=19% Similarity=0.201 Sum_probs=205.9
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhC-CCceEecCCCceEEEEeCCCCCCEEEEEEecccCCCCCCCCCccc
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSL-GIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEHK 133 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~-G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~~~~ 133 (324)
+++++++++|++|||+|++|.++++||.++|+++ |+++.. .++|++++++++.+++|+|+||+||||+.+ .+++.
T Consensus 7 ~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~--~~~~~ 82 (352)
T PRK13007 7 ADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIR--HGNSVVARTDLGRPSRVVLAGHLDTVPVAD--NLPSR 82 (352)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEe--cCCeEEEEccCCCCCeEEEEccccccCCCC--CCCcc
Confidence 7899999999999999999999999999999996 887764 356899999655457899999999999864 34443
Q ss_pred cccCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc---ccHHHHHHcc-CcCCcceEEEeccCC
Q 020605 134 SKNNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY---GGAYYMIKEG-AVDKFQGMFGIHISP 206 (324)
Q Consensus 134 ~~~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~---~G~~~~~~~~-~~~~~d~~i~~~~~~ 206 (324)
.+||++||||+ |+++|++|.|++.+. .++++|.|+|++|||.+ .|+..++... .+.++|++++.|++.
T Consensus 83 -~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~~ 157 (352)
T PRK13007 83 -REGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLEPTD 157 (352)
T ss_pred -eeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEecCCC
Confidence 45899999994 899999999999993 36789999999999953 4888888653 223579999877532
Q ss_pred CCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCC---CCCCceEEEEEEEcCC
Q 020605 207 VLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETD---PLEARVVTVGFIDAGQ 283 (324)
Q Consensus 207 ~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~---~~~~~~~~v~~i~gg~ 283 (324)
+.+. ..++|..+++++++|+++|+|.|+.|.||+..+++++.+++++..+... .....++|++.|+||.
T Consensus 158 ----~~i~----~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~gG~ 229 (352)
T PRK13007 158 ----GVIE----AGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVDGLTYREGLNAVRISGGV 229 (352)
T ss_pred ----CceE----eeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccCCCCccceeEeEeEecCC
Confidence 1221 2347999999999999999999999999999999999999876533211 1123589999999999
Q ss_pred CCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHH
Q 020605 284 AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFE 320 (324)
Q Consensus 284 ~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~ 320 (324)
..|+||++|++++|+|++|.++.+++.+.|++.+++.
T Consensus 230 ~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~ 266 (352)
T PRK13007 230 AGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFDGF 266 (352)
T ss_pred cCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999887653
No 28
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=7e-40 Score=312.79 Aligned_cols=272 Identities=17% Similarity=0.157 Sum_probs=216.6
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcc------hHHHHHHHHHHHhhCCC-ceEec--CCCceEEEEeCCC-CC
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFE------EYETSQLVRSELDSLGI-EYTWP--VAKTGIVASVGSG-GE 110 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~------e~~~~~~l~~~l~~~G~-~~~~~--~~~~nvia~~~~~-~~ 110 (324)
.+++.++++++. +++++++++|++|||++++ |.++++||.++|+++|+ +++.. ++++|++++++++ ++
T Consensus 6 ~~~~~~~i~~~~--~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~~~ 83 (449)
T PRK07907 6 ADDLRARVAELL--PRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPPGA 83 (449)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCCCC
Confidence 556888888877 9999999999999999963 67899999999999998 67652 4678999999654 35
Q ss_pred CEEEEEEecccCCCCCCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC-Ccc
Q 020605 111 PWFGLRAEMDALPLQEMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE-GYG 182 (324)
Q Consensus 111 ~~i~l~~H~DtVp~~~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~ 182 (324)
|+|+|+||+||||+++...| ||.. .+||++|||| |||++++++.|++++ +.+++++|.|++++||| ++.
T Consensus 84 ~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~ 160 (449)
T PRK07907 84 PTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGSP 160 (449)
T ss_pred CEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCCc
Confidence 89999999999999765556 6764 4589999999 499999999999998 23567899999999999 457
Q ss_pred cHHHHHHccC-cCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEE--ecCCCCCC-CCCCCCHHHHHHHHHHHH
Q 020605 183 GAYYMIKEGA-VDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIK--GKGGHAAM-PQDTRDPVLAASFAILTL 258 (324)
Q Consensus 183 G~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~--G~~~Hs~~-p~~g~nAi~~l~~~l~~l 258 (324)
|++++++... ..+.|++++.+++... .+.... ...++|..+++++++ |+++|+|. +..+.||+..+++++.+|
T Consensus 161 g~~~~l~~~~~~~~~d~~iv~E~~~~~-~~~p~i--~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l 237 (449)
T PRK07907 161 SLERLLAEHPDLLAADVIVIADSGNWS-VGVPAL--TTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATL 237 (449)
T ss_pred cHHHHHHhchHhhcCCEEEEecCCcCC-CCCeEE--EEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhh
Confidence 8999987631 1246888887753311 111111 234589999999998 89999997 467899999999999999
Q ss_pred HHhhccc-------CCC---------------------------------CCCceEEEEEEEc---CCCCcccCCeEEEE
Q 020605 259 QHIVSRE-------TDP---------------------------------LEARVVTVGFIDA---GQAGNIIPEIVRFG 295 (324)
Q Consensus 259 ~~~~~~~-------~~~---------------------------------~~~~~~~v~~i~g---g~~~n~iP~~a~~~ 295 (324)
.+..... ..+ ...+++|++.|++ |.+.|+||++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~a~~~ 317 (449)
T PRK07907 238 HDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPPVAGASNALPPSARAR 317 (449)
T ss_pred CCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCCCCCCCCEecCceEEE
Confidence 7643210 000 1246889999986 46889999999999
Q ss_pred EEEecCChhhHHHHHHHHHHHHHHH
Q 020605 296 GTFRSLTTEGLLYLEQRIKEVKLFE 320 (324)
Q Consensus 296 ~d~R~~~~~~~~~~~~~i~~~i~~~ 320 (324)
+|+|++|.++.+++.+.|++++++.
T Consensus 318 ~diR~~p~~~~e~v~~~l~~~l~~~ 342 (449)
T PRK07907 318 LSLRVAPGQDAAEAQDALVAHLEAH 342 (449)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998763
No 29
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=1.8e-39 Score=302.91 Aligned_cols=249 Identities=17% Similarity=0.140 Sum_probs=205.4
Q ss_pred HHHHHHHHHhccCCCCCcchH---HHHHHHHHHHhhCCCceEecC---C-CceEEEEeCCC--CCCEEEEEEecccCCC-
Q 020605 55 EWMRRIRRRIHENPELGFEEY---ETSQLVRSELDSLGIEYTWPV---A-KTGIVASVGSG--GEPWFGLRAEMDALPL- 124 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~---~~~~~l~~~l~~~G~~~~~~~---~-~~nvia~~~~~--~~~~i~l~~H~DtVp~- 124 (324)
+++++++++|++|||++++|. ++++|+.++|+++|++++... + .+|+++++++. .+|+|+|+|||||||+
T Consensus 11 ~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~~~ 90 (376)
T PRK07473 11 EAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVHPV 90 (376)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCCCC
Confidence 899999999999999999876 667899999999999987632 2 35899998642 3589999999999965
Q ss_pred CCCCCCccccccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccCcCCcceEE
Q 020605 125 QEMVEWEHKSKNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGAVDKFQGMF 200 (324)
Q Consensus 125 ~~~~~~~~~~~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~~~~~d~~i 200 (324)
+.++.+||. .+||++|||| |||+++++|.|++++++.+..++.+|.|+|++|||. +.|++.+++++.. ..|+++
T Consensus 91 ~~~~~~p~~-~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~-~~d~~i 168 (376)
T PRK07473 91 GTLEKLPWR-REGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAA-RNKYVL 168 (376)
T ss_pred CCccCCCeE-EECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhc-cCCEEE
Confidence 444456785 6689999999 699999999999999988766778999999999994 4699999987533 579999
Q ss_pred EeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCC-CCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEE
Q 020605 201 GIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAA-MPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFI 279 (324)
Q Consensus 201 ~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~-~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i 279 (324)
+.+++ ...+.+. ..++|..+++|+++|+++|+| .|+.|.||+..+++++.+|+++.. ...++|++.|
T Consensus 169 v~ep~--~~~~~v~----~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------~~~~~~vg~i 236 (376)
T PRK07473 169 VPEPG--RPDNGVV----TGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------EDCTFSVGIV 236 (376)
T ss_pred EeCCC--CCCCCEE----EECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------CCceEeEeeE
Confidence 87753 2222222 124799999999999999987 699999999999999999988742 2368999999
Q ss_pred EcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHH
Q 020605 280 DAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVK 317 (324)
Q Consensus 280 ~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i 317 (324)
+||...|+||++|++++++|....++.+++.+++.+.+
T Consensus 237 ~gg~~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~ 274 (376)
T PRK07473 237 HGGQWVNCVATTCTGEALSMAKRQADLDRGVARMLALS 274 (376)
T ss_pred EcCCCCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhh
Confidence 99999999999999999999888777777777766544
No 30
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.4e-39 Score=306.15 Aligned_cols=257 Identities=21% Similarity=0.219 Sum_probs=210.7
Q ss_pred HHHHHHHHHhccCCCCC---cchHHHHHHHHHHHhhCCCceEecCC-----------CceEEEEeCCCCCCEEEEEEecc
Q 020605 55 EWMRRIRRRIHENPELG---FEEYETSQLVRSELDSLGIEYTWPVA-----------KTGIVASVGSGGEPWFGLRAEMD 120 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s---~~e~~~~~~l~~~l~~~G~~~~~~~~-----------~~nvia~~~~~~~~~i~l~~H~D 120 (324)
+++++++++|++|||+| .+|.++++||+++|+++|++++.... ++|+++..+.++ |+|+|+||||
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ill~~HlD 84 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSGN-PHLHFNGHYD 84 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCCC-ceEEEEeeee
Confidence 89999999999999998 66789999999999999998876321 245788765444 9999999999
Q ss_pred cCCCCCC--CCCccccc-cCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCc
Q 020605 121 ALPLQEM--VEWEHKSK-NNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAV 193 (324)
Q Consensus 121 tVp~~~~--~~~~~~~~-~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~ 193 (324)
|||+++. ...||... +||++||||+ |++++++|++++.+++.+ +++|.|+|++|||.+ .|++++++++.+
T Consensus 85 tvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~~~~~~~~~~ 161 (394)
T PRK08651 85 VVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGTGYLVEEGKV 161 (394)
T ss_pred eecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhHHHHHhccCC
Confidence 9998653 33477753 6899999994 899999999999998764 789999999999955 699999998754
Q ss_pred CCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccC-------
Q 020605 194 DKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRET------- 266 (324)
Q Consensus 194 ~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~------- 266 (324)
++|++++.+++. . +.+. ..++|..+++|+++|+++|++.|+.|.||+..+++++..|++......
T Consensus 162 -~~d~~i~~~~~~--~-~~i~----~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~ 233 (394)
T PRK08651 162 -TPDYVIVGEPSG--L-DNIC----IGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKYEYDD 233 (394)
T ss_pred -CCCEEEEecCCC--C-CceE----EecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 478888765422 1 1222 134799999999999999999999999999999999999986532111
Q ss_pred CCCCCceEEEEE--EEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHhh
Q 020605 267 DPLEARVVTVGF--IDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVAY 323 (324)
Q Consensus 267 ~~~~~~~~~v~~--i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~~ 323 (324)
......+++++. ++||...|+||++|++.+|+|++|.++.+++.+.|++++++.+.+
T Consensus 234 ~~~~~~~~~ig~~~i~gG~~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 292 (394)
T PRK08651 234 ERGAKPTVTLGGPTVEGGTKTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPE 292 (394)
T ss_pred cccCCCceeecceeeeCCCCCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhc
Confidence 112346788888 999999999999999999999999999999999999999887543
No 31
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=1e-39 Score=312.83 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=217.8
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcch------HHHHHHHHHHHhhCCCceEe--cCCCceEEEEeCCC--CC
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFEE------YETSQLVRSELDSLGIEYTW--PVAKTGIVASVGSG--GE 110 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e------~~~~~~l~~~l~~~G~~~~~--~~~~~nvia~~~~~--~~ 110 (324)
..++.++++.+. +++++++++|++|||+++++ .++++||.++|+++|++++. ..+++|++++++++ .+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~ 82 (464)
T PRK09104 5 LDPVLDHIDANL--DASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDA 82 (464)
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 556888888887 99999999999999999754 67899999999999999875 34567999999642 35
Q ss_pred CEEEEEEecccCCCCCCCCC---ccccc-cCC-----ceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccC
Q 020605 111 PWFGLRAEMDALPLQEMVEW---EHKSK-NNG-----KMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGE 178 (324)
Q Consensus 111 ~~i~l~~H~DtVp~~~~~~~---~~~~~-~~g-----~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 178 (324)
|+|+|+||+||||+++.+.| ||... ++| ++|||| +||++++++.|++.|++.+..++++|.|+|++||
T Consensus 83 ~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dE 162 (464)
T PRK09104 83 PHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEE 162 (464)
T ss_pred CEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 99999999999999765567 66642 343 599999 4899999999999999876678889999999999
Q ss_pred CC-cccHHHHHHccC-cCCcceEEEeccCCCCCC-ceEEeecccccceeeEEEEEEEe--cCCCCCC-CCCCCCHHHHHH
Q 020605 179 EG-YGGAYYMIKEGA-VDKFQGMFGIHISPVLPT-GTVGSRPGPLLAGSGRFTAVIKG--KGGHAAM-PQDTRDPVLAAS 252 (324)
Q Consensus 179 E~-~~G~~~~~~~~~-~~~~d~~i~~~~~~~~~~-~~~~~~~g~~~~G~~~~~i~~~G--~~~Hs~~-p~~g~nAi~~l~ 252 (324)
|. +.|+..++.+.. ....|++|+.+++...+. ..+ ..+++|..+++++++| +++|||. |+.|.||+..++
T Consensus 163 E~g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~~~i----~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~ 238 (464)
T PRK09104 163 ESGSPSLVPFLEANAEELKADVALVCDTGMWDRETPAI----TTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLT 238 (464)
T ss_pred ccCCccHHHHHHhhHHhcCCCEEEEeCCCCCCCCCeEE----EeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHH
Confidence 94 567777776532 114799998774321111 122 2345899999999999 6899996 688999999999
Q ss_pred HHHHHHHHhhccc------------------------------------CCC------------CCCceEEEEEEEcCC-
Q 020605 253 FAILTLQHIVSRE------------------------------------TDP------------LEARVVTVGFIDAGQ- 283 (324)
Q Consensus 253 ~~l~~l~~~~~~~------------------------------------~~~------------~~~~~~~v~~i~gg~- 283 (324)
+++.+|++..... ..+ ...+++|++.|+||.
T Consensus 239 ~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~ 318 (464)
T PRK09104 239 RILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYT 318 (464)
T ss_pred HHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCC
Confidence 9999987532110 000 113689999999985
Q ss_pred ---CCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 284 ---AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 284 ---~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
..|+||++|++++|+|++|.++.+++.+.|++++++
T Consensus 319 ~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~ 357 (464)
T PRK09104 319 GEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRA 357 (464)
T ss_pred CCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999875
No 32
>PRK08262 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=314.43 Aligned_cols=260 Identities=14% Similarity=0.127 Sum_probs=205.1
Q ss_pred HHHHHHHHHhccCCCCCcchH---------HHHHHHHHHHhhCCCceEec-CCCceEEEEeCCC-CC-CEEEEEEecccC
Q 020605 55 EWMRRIRRRIHENPELGFEEY---------ETSQLVRSELDSLGIEYTWP-VAKTGIVASVGSG-GE-PWFGLRAEMDAL 122 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~---------~~~~~l~~~l~~~G~~~~~~-~~~~nvia~~~~~-~~-~~i~l~~H~DtV 122 (324)
+++++++++|++|||+|++|. ++++||.++|+..|++++.. ..+.|+++.+.++ ++ |+|+|+||+|||
T Consensus 44 ~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH~DvV 123 (486)
T PRK08262 44 DAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAHQDVV 123 (486)
T ss_pred HHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECccccc
Confidence 899999999999999998763 48999999999999976642 2335788887543 33 899999999999
Q ss_pred CCCCC--CCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccC
Q 020605 123 PLQEM--VEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGA 192 (324)
Q Consensus 123 p~~~~--~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~ 192 (324)
|+++. ..| ||.. .+||++|||| |||+++++|.|++.+++.+..++++|.|+|++|||. +.|++.+++...
T Consensus 124 p~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~l~ 203 (486)
T PRK08262 124 PVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAELLK 203 (486)
T ss_pred CCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHHHH
Confidence 98653 357 6765 4689999999 599999999999999988877899999999999994 468888876311
Q ss_pred c--CCcceEEE-----ecc---CCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 020605 193 V--DKFQGMFG-----IHI---SPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIV 262 (324)
Q Consensus 193 ~--~~~d~~i~-----~~~---~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~ 262 (324)
. ...|+++. .+. +.+.|++.+ +.+++|..+++|+++|+++|+|.|+. .||+..++++|.+|++..
T Consensus 204 ~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~i----~~~~kG~~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~ 278 (486)
T PRK08262 204 ERGVRLAFVLDEGGAITEGVLPGVKKPVALI----GVAEKGYATLELTARATGGHSSMPPR-QTAIGRLARALTRLEDNP 278 (486)
T ss_pred HhcCCEEEEEeCCceecccccCCCCceEEee----EEeeeeeEEEEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCC
Confidence 0 12344321 110 112343332 33458999999999999999999988 999999999999998632
Q ss_pred ccc--------------------------------------------CCCCCCceEEEEEEEcCCCCcccCCeEEEEEEE
Q 020605 263 SRE--------------------------------------------TDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTF 298 (324)
Q Consensus 263 ~~~--------------------------------------------~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~ 298 (324)
.+. ......+|+|++.|+||...|+||++|++++|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~~~NvIP~~a~~~~di 358 (486)
T PRK08262 279 LPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSPKDNVLPQRATATVNF 358 (486)
T ss_pred CCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCCccccCCCccEEEEEE
Confidence 100 001235789999999999999999999999999
Q ss_pred ecCChhhHHHHHHHHHHHHHH
Q 020605 299 RSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 299 R~~~~~~~~~~~~~i~~~i~~ 319 (324)
|++|.++.+++.++|++++++
T Consensus 359 R~~p~~~~~~i~~~i~~~~~~ 379 (486)
T PRK08262 359 RILPGDSVESVLAHVRRAVAD 379 (486)
T ss_pred EeCCCCCHHHHHHHHHHHhcc
Confidence 999999999999999998865
No 33
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=8.5e-39 Score=296.89 Aligned_cols=243 Identities=15% Similarity=0.123 Sum_probs=195.8
Q ss_pred HHHHHHHHHhccCCCCC----cchHHHHHHHHHHHhhCCCceEec---CCCceEEEEeCCCCCCEEEEEEecccCCCCC-
Q 020605 55 EWMRRIRRRIHENPELG----FEEYETSQLVRSELDSLGIEYTWP---VAKTGIVASVGSGGEPWFGLRAEMDALPLQE- 126 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s----~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~- 126 (324)
+++++++++|++|||.+ ++|.++++|+.++|+ |++++.. .+++|+++.. + +|+|+|+||+||||+++
T Consensus 6 ~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g--~~~lll~gH~DtVp~~~~ 80 (364)
T PRK08737 6 ESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G--TPKYLFNVHLDTVPDSPH 80 (364)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C--CCeEEEEeeeCCCCCCCC
Confidence 78999999999999985 357899999999997 9987764 3457899874 2 27899999999999864
Q ss_pred CCCCcccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHHccCcCCcceEE
Q 020605 127 MVEWEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIKEGAVDKFQGMF 200 (324)
Q Consensus 127 ~~~~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~~~~d~~i 200 (324)
|...||.. ++||++|||| |||++++++.|++. +.++|.|+|++|||.+ .|++.+++.+. +.|+++
T Consensus 81 w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~~~~~i 151 (364)
T PRK08737 81 WSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--PYEAVL 151 (364)
T ss_pred CCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--CCCEEE
Confidence 22336654 5689999999 48999999999863 3578999999999954 48889998864 578888
Q ss_pred EeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCC-CCCCCHHHHHHHHHHHHHHhhccc----CCCCCCceEE
Q 020605 201 GIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMP-QDTRDPVLAASFAILTLQHIVSRE----TDPLEARVVT 275 (324)
Q Consensus 201 ~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p-~~g~nAi~~l~~~l~~l~~~~~~~----~~~~~~~~~~ 275 (324)
+.++ ++... ...++|..+++|+++|+++|+|.| +.|.|||..+++++.++.+..... .......++|
T Consensus 152 v~Ep-----t~~~~---~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~ 223 (364)
T PRK08737 152 VAEP-----TMSEA---VLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLAHARFGGLTGLRFN 223 (364)
T ss_pred EcCC-----CCcee---EEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceE
Confidence 7654 32211 134589999999999999999987 589999999999998876543211 1223356999
Q ss_pred EEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 276 VGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 276 v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
++.|+||.+.|+||++|++++|+|+.|.++.+++.+.|++.++.
T Consensus 224 vg~i~GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~~ 267 (364)
T PRK08737 224 IGRVEGGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAEP 267 (364)
T ss_pred EeeEecCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877654
No 34
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=5.6e-39 Score=297.05 Aligned_cols=242 Identities=17% Similarity=0.128 Sum_probs=199.8
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCC--CceEEEEeCCCCCCEEEEEEecccCCCCCCCCCcc
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVA--KTGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEH 132 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~--~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~~~ 132 (324)
+++++++++|++|||+|++|.++++||.++|+++|++++.... ..|+++ +++|+|+|+|||||||.+. .|+
T Consensus 2 ~~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~----~~~~~i~l~~H~D~vp~~~---~~~ 74 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV----NSKAELFVEVHYDTVPVRA---EFF 74 (347)
T ss_pred hhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc----CCCCEEEEEccccccCCCC---CCE
Confidence 6789999999999999999999999999999999999876432 356665 2358999999999999743 122
Q ss_pred ccccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC-CcccHHHHHHccCcCCcceEEEeccCCCC
Q 020605 133 KSKNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE-GYGGAYYMIKEGAVDKFQGMFGIHISPVL 208 (324)
Q Consensus 133 ~~~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~~~~~~~~~~~d~~i~~~~~~~~ 208 (324)
.+||++|||| |||++++++.|++.|.+.. .+++|.|+|++||| ++.|++.+++.. ..|++++.+++.
T Consensus 75 --~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~g~~G~~~~~~~~---~~d~~i~~ep~~-- 145 (347)
T PRK08652 75 --VDGVYVYGTGACDAKGGVAAILLALEELGKEF--EDLNVGIAFVSDEEEGGRGSALFAERY---RPKMAIVLEPTD-- 145 (347)
T ss_pred --EECCEEEeccchhhhHHHHHHHHHHHHHhhcc--cCCCEEEEEecCcccCChhHHHHHHhc---CCCEEEEecCCC--
Confidence 4589999999 5999999999999998643 46799999999999 457999998762 358888876532
Q ss_pred CCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCccc
Q 020605 209 PTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNII 288 (324)
Q Consensus 209 ~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~i 288 (324)
+.+ ...++|..+++|+++|+++|++.|+.|.||+..+++++..|+++......... .+++++.++||...|+|
T Consensus 146 --~~i----~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~~~~~~-~~~~~~~i~gg~~~nvi 218 (347)
T PRK08652 146 --LKV----AIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKALGKYFD-PHIGIQEIIGGSPEYSI 218 (347)
T ss_pred --Cce----eeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhhhcccC-CCCcceeeecCCCCCcc
Confidence 122 22457999999999999999999999999999999999999876533211111 35677889999999999
Q ss_pred CCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 289 PEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 289 P~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
|++|++++|+|++|.++.+++.++|++++++
T Consensus 219 P~~~~~~~diR~~~~~~~~~v~~~i~~~~~~ 249 (347)
T PRK08652 219 PALCRLRLDARIPPEVEVEDVLDEIDPILDE 249 (347)
T ss_pred CCcEEEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998865
No 35
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=1.3e-38 Score=294.63 Aligned_cols=242 Identities=15% Similarity=0.073 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccCCCCCCCCCccc
Q 020605 54 FEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEHK 133 (324)
Q Consensus 54 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~~~~ 133 (324)
.+++++++++|++|||++++|.++++|+.++|+++|++++.+.. .|++++++++ +|+|+|+||+||||.. .|+.
T Consensus 5 ~~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~-~n~i~~~~~~-~~~l~~~~H~DtVp~~----~p~~ 78 (348)
T PRK04443 5 ALEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVDEA-GNARGPAGDG-PPLVLLLGHIDTVPGD----IPVR 78 (348)
T ss_pred hHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEcCC-CcEEEEcCCC-CCEEEEEeeccccCCC----CCcE
Confidence 37899999999999999999999999999999999999886543 4799998544 4999999999999953 2553
Q ss_pred cccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCcceEEEeccCCCCC
Q 020605 134 SKNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFGIHISPVLP 209 (324)
Q Consensus 134 ~~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~~~~~~~ 209 (324)
.+||++|||| +||++++++.|++++ +.+++++|.|+|++|||.+ .|...++.++. .+|++++.|++..
T Consensus 79 -~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~~--~~d~~iv~Ept~~-- 150 (348)
T PRK04443 79 -VEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGARLVADRE--RPDAVIIGEPSGW-- 150 (348)
T ss_pred -eeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHHHHHhcc--CCCEEEEeCCCCc--
Confidence 4689999999 589999999999998 3468899999999999954 45666666554 5899998664321
Q ss_pred CceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhc---ccCCCCCCceEEEEEEEcCCCCc
Q 020605 210 TGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVS---RETDPLEARVVTVGFIDAGQAGN 286 (324)
Q Consensus 210 ~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~---~~~~~~~~~~~~v~~i~gg~~~n 286 (324)
+.+ ...++|..+++++++|+++|||.| |.||+..+++++..|+++.. .....+...++|++.|. ...|
T Consensus 151 -~~i----~~~~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~i~--~~~n 221 (348)
T PRK04443 151 -DGI----TLGYKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEANDGRERVFDQVTPKLVDFD--SSSD 221 (348)
T ss_pred -cce----eeecccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhcCccccccccccceeeeEEe--cCCC
Confidence 111 224579999999999999999987 78999999999999987653 11122445688898888 4679
Q ss_pred ccCCeEEEEEEEecCChhhHHHHHHHHHHHHH
Q 020605 287 IIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKL 318 (324)
Q Consensus 287 ~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~ 318 (324)
+||++|++++|+|++|.++.+++.+.|++++.
T Consensus 222 ~iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~ 253 (348)
T PRK04443 222 GLTVEAEMTVGLRLPPGLSPEEAREILDALLP 253 (348)
T ss_pred CCCceEEEEEEEccCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999998863
No 36
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-39 Score=304.02 Aligned_cols=256 Identities=17% Similarity=0.211 Sum_probs=197.9
Q ss_pred HHHHHHhccCCCCC------cchHHHHHHHHHHHhhCCCceEec---CCCceEEEEeCCC-C-CCEEEEEEecccCCCCC
Q 020605 58 RRIRRRIHENPELG------FEEYETSQLVRSELDSLGIEYTWP---VAKTGIVASVGSG-G-EPWFGLRAEMDALPLQE 126 (324)
Q Consensus 58 ~~~~~~l~~ips~s------~~e~~~~~~l~~~l~~~G~~~~~~---~~~~nvia~~~~~-~-~~~i~l~~H~DtVp~~~ 126 (324)
++++++|++|||++ ++|.++++|+.++|+++|++++.. .+++|++++++++ + .|+|+|+||+||||+++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 67899999999998 678999999999999999998764 2567999999653 3 48999999999999854
Q ss_pred CCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHHccC--cCC
Q 020605 127 MVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIKEGA--VDK 195 (324)
Q Consensus 127 ~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~--~~~ 195 (324)
..| ||.. .+||++|||| +||+++++|.|++++++.+..++++|.|+|++|||.+ .|++.++++.. +..
T Consensus 82 -~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~ 160 (426)
T PRK07906 82 -ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEG 160 (426)
T ss_pred -ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccc
Confidence 356 6654 4689999999 4899999999999999988888999999999999964 38998887531 222
Q ss_pred cceEEEeccCCC---CCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhccc-------
Q 020605 196 FQGMFGIHISPV---LPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRE------- 265 (324)
Q Consensus 196 ~d~~i~~~~~~~---~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~------- 265 (324)
.+++ ..+++.. .+...........++|..+++|+++|+++|+|.|+. .|||..++++|.+|++...+.
T Consensus 161 ~~~i-i~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~ 238 (426)
T PRK07906 161 VTEA-ISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVR 238 (426)
T ss_pred hheE-EECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHH
Confidence 3333 3333210 111100011234568999999999999999999865 899999999999997542110
Q ss_pred -------------CCCC-------------------CCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHH
Q 020605 266 -------------TDPL-------------------EARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRI 313 (324)
Q Consensus 266 -------------~~~~-------------------~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i 313 (324)
..+. ..+++|++.|+||.+.|+||++|++++|+|++|.++ +++.+.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i 317 (426)
T PRK07906 239 AFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATV 317 (426)
T ss_pred HHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccCccccCCCceEEEEEEeECCCCc-HHHHHHH
Confidence 0000 136999999999999999999999999999999886 6677777
Q ss_pred HHHH
Q 020605 314 KEVK 317 (324)
Q Consensus 314 ~~~i 317 (324)
++++
T Consensus 318 ~~~~ 321 (426)
T PRK07906 318 DELL 321 (426)
T ss_pred HHHh
Confidence 6654
No 37
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=1.9e-38 Score=293.34 Aligned_cols=236 Identities=15% Similarity=0.079 Sum_probs=195.5
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccCCCCCCCCCcccc
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEHKS 134 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~~~~~ 134 (324)
+++++++++|++|||++++|.++++|+.++|+++|++++.+..+ |++. .+ +|+|+|+||+||||.. ++. .
T Consensus 10 ~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~-~~~~--~g--~~~lll~gH~DtVp~~----~~~-~ 79 (346)
T PRK00466 10 QKAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILPDS-NSFI--LG--EGDILLASHVDTVPGY----IEP-K 79 (346)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEecCC-CcEe--cC--CCeEEEEeccccCCCC----CCc-e
Confidence 78889999999999999999999999999999999998875433 4553 22 3789999999999941 122 3
Q ss_pred ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccCcCCcceEEEeccCCCCCC
Q 020605 135 KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGAVDKFQGMFGIHISPVLPT 210 (324)
Q Consensus 135 ~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~~~~~d~~i~~~~~~~~~~ 210 (324)
.+||++|||| |||++++++.|++++++.+ .++.|+|++|||. +.|++++++++. ++|++++.++ +
T Consensus 80 ~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~~--~~d~~i~~ep-----~ 148 (346)
T PRK00466 80 IEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKGF--NFKHIIVGEP-----S 148 (346)
T ss_pred eeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcCC--CCCEEEEcCC-----C
Confidence 4689999999 5899999999999998765 3589999999995 469999999874 5788887553 3
Q ss_pred ceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCC
Q 020605 211 GTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPE 290 (324)
Q Consensus 211 ~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~ 290 (324)
+..... ..++|..+++|+++|+++|+|.|+ .|||..+++++.++.+... .....++|++.++||...|+||+
T Consensus 149 ~~~~i~--~~~kG~~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~~~----~~~~~t~~~~~i~gG~~~NvvP~ 220 (346)
T PRK00466 149 NGTDIV--VEYRGSIQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQPE----NYDKPSIVPTIIRAGESYNVTPA 220 (346)
T ss_pred CCCceE--EEeeEEEEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhccc----cCCCCcceeeEEecCCcCcccCC
Confidence 211111 235799999999999999999886 4999999999999976432 22356899999999999999999
Q ss_pred eEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 291 IVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 291 ~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
+|++++|+|++|.++.+++.++|++.+++
T Consensus 221 ~a~~~~diR~~p~~~~~~v~~~i~~~~~~ 249 (346)
T PRK00466 221 KLYLHFDVRYAINNKRDDLISEIKDKFQE 249 (346)
T ss_pred ceEEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999998864
No 38
>PRK07079 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=298.70 Aligned_cols=273 Identities=14% Similarity=0.011 Sum_probs=206.6
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcc---hHHHHHHHH----HHHhhCCCceEe-c----CCCceEEEEeCCC
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFE---EYETSQLVR----SELDSLGIEYTW-P----VAKTGIVASVGSG 108 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~---e~~~~~~l~----~~l~~~G~~~~~-~----~~~~nvia~~~~~ 108 (324)
..++.++++. +++++++++|++|||+|++ +.++++|+. ++|+++|++++. + .+++|++++++++
T Consensus 7 ~~~~~~~~~~----~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~ 82 (469)
T PRK07079 7 IARAAAYFDS----GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIED 82 (469)
T ss_pred HHHHHHhhcc----HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCC
Confidence 3455555552 5799999999999999974 456777664 589999999875 2 2468999998654
Q ss_pred -CCCEEEEEEecccCCCCC--CC--CCcccc-ccCCceeecc---chHHHHHHHHHHHHHHhc-CCCCCceEEEEEeccC
Q 020605 109 -GEPWFGLRAEMDALPLQE--MV--EWEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHR-MDRLKGTVKLVFQPGE 178 (324)
Q Consensus 109 -~~~~i~l~~H~DtVp~~~--~~--~~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~-~~~~~~~i~~~~~~dE 178 (324)
++|+|+|+||+||||+++ |+ ..||.. .+||++|||| |||++++++.|++++.+. +.+++++|.|+|++||
T Consensus 83 ~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dE 162 (469)
T PRK07079 83 DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIEMGE 162 (469)
T ss_pred CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcc
Confidence 458999999999999753 33 256764 4689999999 599999999999998754 4678899999999999
Q ss_pred CC-cccHHHHHHccC-cCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEec--CCCCCC-CCCCCCHHHHHHH
Q 020605 179 EG-YGGAYYMIKEGA-VDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGK--GGHAAM-PQDTRDPVLAASF 253 (324)
Q Consensus 179 E~-~~G~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~--~~Hs~~-p~~g~nAi~~l~~ 253 (324)
|. +.|++.++++.. ....|++++.+++...+... .. ...++|..+++|+++|+ +.||+. ...+.||+..+++
T Consensus 163 E~g~~G~~~l~~~~~~~~~~d~~iv~e~~~~~~~~~-~i--~~g~kG~~~~~v~v~G~~~~~hs~~~~g~~~nai~~l~~ 239 (469)
T PRK07079 163 EIGSPGLAEVCRQHREALAADVLIASDGPRLSAERP-TL--FLGSRGAVNFRLRVNLRDGAHHSGNWGGLLRNPGTVLAH 239 (469)
T ss_pred ccCCccHHHHHHHhHHhcCCCEEEEeCCCccCCCCe-EE--EEecceEEEEEEEEeeCCCCCCCCccccccCCHHHHHHH
Confidence 94 569999988642 11478998876532212211 11 23458999999999997 446663 2344799999999
Q ss_pred HHHHHHHhhccc------------------------C--------------------CCCCCceEEEEEEEcCC---CCc
Q 020605 254 AILTLQHIVSRE------------------------T--------------------DPLEARVVTVGFIDAGQ---AGN 286 (324)
Q Consensus 254 ~l~~l~~~~~~~------------------------~--------------------~~~~~~~~~v~~i~gg~---~~n 286 (324)
+|.++.+..... . .....+++|++.|+||. ..|
T Consensus 240 ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~~~~~N 319 (469)
T PRK07079 240 AIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNPDAPVN 319 (469)
T ss_pred HHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCCCCcce
Confidence 999985421000 0 00123589999999984 689
Q ss_pred ccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHH
Q 020605 287 IIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFE 320 (324)
Q Consensus 287 ~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~ 320 (324)
+||++|++++|+|++|.++.+++.+.|++++++.
T Consensus 320 vVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~ 353 (469)
T PRK07079 320 AIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAH 353 (469)
T ss_pred EecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998863
No 39
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=100.00 E-value=2.4e-37 Score=287.68 Aligned_cols=249 Identities=17% Similarity=0.153 Sum_probs=204.9
Q ss_pred HHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecC------CCceEEEEeCCC-CCCEEEEEEecccCCCCCCCC
Q 020605 57 MRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPV------AKTGIVASVGSG-GEPWFGLRAEMDALPLQEMVE 129 (324)
Q Consensus 57 ~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~------~~~nvia~~~~~-~~~~i~l~~H~DtVp~~~~~~ 129 (324)
+++++++|++|||++++|.++++|+.++|+++|++++... +++|+++.++++ ++|+|+|.||+||||+++ .
T Consensus 2 ~~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~--~ 79 (361)
T TIGR01883 2 LKKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGA--G 79 (361)
T ss_pred hHHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCCCCcEEEEeeccccCCCC--C
Confidence 5788999999999999999999999999999999987643 378999999654 358999999999999754 2
Q ss_pred CccccccCCceeeccc-------hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCcceEEE
Q 020605 130 WEHKSKNNGKMHGCGH-------DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFG 201 (324)
Q Consensus 130 ~~~~~~~~g~~~grG~-------kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~ 201 (324)
|. ...++|++||||+ |++++++|.+++.|++.+ .++++|.|+|++|||.+ .|++.+.+.+. ..++.+.
T Consensus 80 ~~-~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G~~~~~~~~~--~~~~~~~ 155 (361)
T TIGR01883 80 PE-PVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIGMRLFDESKI--TAAYGYC 155 (361)
T ss_pred CC-ceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchhHhHhChhhc--CcceeEE
Confidence 32 1345789999883 599999999999998865 56789999999999954 69988877543 4677777
Q ss_pred eccCCCCCCceEEeecccccceeeEEEEEEEecCCCCC-CCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEE
Q 020605 202 IHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAA-MPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFID 280 (324)
Q Consensus 202 ~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~-~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~ 280 (324)
.+++ .+.+.+.. .++|..+++++++|+++|+| .|+.|+||+..+++++..|+... .....++|++.++
T Consensus 156 ~~~~--~~~~~i~~----~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~-----~~~~~~~~i~~i~ 224 (361)
T TIGR01883 156 LDAP--GEVGNIQL----AAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGR-----IDEETTANIGSFS 224 (361)
T ss_pred EeCC--CCcceEEe----cCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccC-----CCCccccccceee
Confidence 6542 22333322 23788999999999999986 79999999999999999986431 1124678999999
Q ss_pred cCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 281 AGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 281 gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
||...|+||++|++.+|+|..|..+.+++.+.|++.++..+.
T Consensus 225 gG~~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~ 266 (361)
T TIGR01883 225 GGVNTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAE 266 (361)
T ss_pred cCCccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987654
No 40
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.1e-37 Score=288.64 Aligned_cols=262 Identities=24% Similarity=0.259 Sum_probs=205.9
Q ss_pred HHHHHHHHHhccCCCCC-cchHHHHHHHHHHHhhCCCceEecCC-----CceEEEEeCCCCC-CEEEEEEecccCCCCCC
Q 020605 55 EWMRRIRRRIHENPELG-FEEYETSQLVRSELDSLGIEYTWPVA-----KTGIVASVGSGGE-PWFGLRAEMDALPLQEM 127 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s-~~e~~~~~~l~~~l~~~G~~~~~~~~-----~~nvia~~~~~~~-~~i~l~~H~DtVp~~~~ 127 (324)
+++++++++++++||++ ..+.++++|++++|+++|+.++.+.. .+|++++++++++ |+|+|+||+||||+++.
T Consensus 13 ~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~l~l~~H~DvVP~g~~ 92 (409)
T COG0624 13 DDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGGPTLLLGGHLDVVPAGGG 92 (409)
T ss_pred HHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCCCeEEEeccccccCCCCc
Confidence 77889999999999999 88999999999999999998876322 4599999987644 99999999999999887
Q ss_pred CCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccC---cCCc
Q 020605 128 VEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGA---VDKF 196 (324)
Q Consensus 128 ~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~---~~~~ 196 (324)
..| ||.. .+||++|||| +||++++++.|++.+.+.+..++++|.++|++|||.+ .|+..++..+. ...+
T Consensus 93 ~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~ 172 (409)
T COG0624 93 EDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRP 172 (409)
T ss_pred ccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcchhhccCC
Confidence 677 6664 4578999999 4899999999999999987788999999999999954 57777776653 1367
Q ss_pred ceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCC--CCCCCC----HHHHHHHHHHHHHHhhcccCCCCC
Q 020605 197 QGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAM--PQDTRD----PVLAASFAILTLQHIVSRETDPLE 270 (324)
Q Consensus 197 d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~--p~~g~n----Ai~~l~~~l~~l~~~~~~~~~~~~ 270 (324)
|+++..++......+..... .++|..+++++++|+++|+|. |+.+.| |+..+++++..+.++.......
T Consensus 173 d~~i~~E~~~~~~~~~~~~~---~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~~~~-- 247 (409)
T COG0624 173 DYEIVGEPTLESEGGDIIVV---GHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGFDG-- 247 (409)
T ss_pred CEEEeCCCCCcccCCCeEEE---cceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccccccccC--
Confidence 88888765111122222222 458999999999999999997 999999 5555555555544332221110
Q ss_pred CceEEEEEEEcCC--------CCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHH
Q 020605 271 ARVVTVGFIDAGQ--------AGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEV 321 (324)
Q Consensus 271 ~~~~~v~~i~gg~--------~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a 321 (324)
..+++++.+.++. ..|+||++|++++|+|+.|.++.+++.+.+++.++..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~ 306 (409)
T COG0624 248 PLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIA 306 (409)
T ss_pred CccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhc
Confidence 3666777655554 46999999999999999999999999999998888754
No 41
>PRK07205 hypothetical protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=292.65 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=191.1
Q ss_pred HHHHHHHHHhccCCCCCcch----------HHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccCCC
Q 020605 55 EWMRRIRRRIHENPELGFEE----------YETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPL 124 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e----------~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~ 124 (324)
+++++++++|++|||+++++ .++++|+.++|+++|++++.+..+.+++++++.+ +|+|+|+||+||||+
T Consensus 11 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~-~~~lll~gH~DvVp~ 89 (444)
T PRK07205 11 DACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYGYAEIGQG-EELLAILCHLDVVPE 89 (444)
T ss_pred HHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCCeEEEEEecCC-CcEEEEEEeeccCCC
Confidence 89999999999999999764 5678899999999999987755455677777533 489999999999999
Q ss_pred CCCCCC---cccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccCcC--
Q 020605 125 QEMVEW---EHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGAVD-- 194 (324)
Q Consensus 125 ~~~~~~---~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~~~-- 194 (324)
++.+.| ||.. ++||++|||| |||+++++|.|++++++.+..++++|.|+|++|||. +.|+..+++.....
T Consensus 90 ~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~~~~~ 169 (444)
T PRK07205 90 GDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEEQATM 169 (444)
T ss_pred CCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCCCCCCe
Confidence 766666 6764 5689999999 499999999999999998888889999999999995 46888887642110
Q ss_pred --Ccce---EEEeccCC------CCCCceEEeecc-----------------------ccccee----eEEEEEEEecCC
Q 020605 195 --KFQG---MFGIHISP------VLPTGTVGSRPG-----------------------PLLAGS----GRFTAVIKGKGG 236 (324)
Q Consensus 195 --~~d~---~i~~~~~~------~~~~~~~~~~~g-----------------------~~~~G~----~~~~i~~~G~~~ 236 (324)
..|. ++..+.+. ++|+.......| ..++|. .+.+++++|+++
T Consensus 170 ~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~ 249 (444)
T PRK07205 170 GFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSV 249 (444)
T ss_pred eECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEc
Confidence 1121 00000000 112211111111 011221 234899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhc-----c---------------cCCCCCCceEEEEEEEcCCCCcccCCeEEEEE
Q 020605 237 HAAMPQDTRDPVLAASFAILTLQHIVS-----R---------------ETDPLEARVVTVGFIDAGQAGNIIPEIVRFGG 296 (324)
Q Consensus 237 Hs~~p~~g~nAi~~l~~~l~~l~~~~~-----~---------------~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~ 296 (324)
|+|.|+.|.|||..+++++.++++... . .......+++|++. .|+||++|++++
T Consensus 250 Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg~------~nvvP~~a~~~l 323 (444)
T PRK07205 250 HAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIAG------LTITKEKSEIRI 323 (444)
T ss_pred ccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcCCCCccccCCccccCCCcCCceEEeEE------EEEECCEEEEEE
Confidence 999999999999999999988864310 0 00112356777765 489999999999
Q ss_pred EEecCChhhHHHHHHHHHHHHHH
Q 020605 297 TFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 297 d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
|+|++|.++.+++.+.|++++++
T Consensus 324 d~R~~p~~~~e~v~~~i~~~~~~ 346 (444)
T PRK07205 324 DIRIPVLADKEKLVQQLSQKAQE 346 (444)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 42
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=5.5e-37 Score=293.39 Aligned_cols=264 Identities=14% Similarity=0.051 Sum_probs=199.3
Q ss_pred HHHhccCcchHHHHHHHHHHhccCCCCCcc------------hHHHHHHHHHHHhhCCCceEecCCCceEEEEeC-CCCC
Q 020605 44 LLDSAREPEFFEWMRRIRRRIHENPELGFE------------EYETSQLVRSELDSLGIEYTWPVAKTGIVASVG-SGGE 110 (324)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~ips~s~~------------e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~-~~~~ 110 (324)
+.+++++++ +++++++++|++|||++.+ +.++++|+.++|+++||+++..+ |.++.+. ++++
T Consensus 4 ~~~~i~~~~--~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~~~~~ 78 (466)
T TIGR01886 4 FKEEVEARK--DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFD---NYAGHVEYGAGD 78 (466)
T ss_pred HHHHHHHhH--HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEec---CCceeEEecCCC
Confidence 455566666 8999999999999999743 46688999999999999987532 3334332 2335
Q ss_pred CEEEEEEecccCCCCC-CCCCcccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccH
Q 020605 111 PWFGLRAEMDALPLQE-MVEWEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGA 184 (324)
Q Consensus 111 ~~i~l~~H~DtVp~~~-~~~~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~ 184 (324)
|+|+|+||+||||+++ |+..||.. .+||++|||| +||++++++.|+++|++.+..++++|.|+|++|||.+ .|+
T Consensus 79 ~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~ 158 (466)
T TIGR01886 79 ERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWVDM 158 (466)
T ss_pred CEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcccH
Confidence 8999999999999964 33347765 4689999999 4899999999999999988888999999999999954 699
Q ss_pred HHHHHccCcCCcceEEEeccCC----CCCCceEEee---------------------------------c----------
Q 020605 185 YYMIKEGAVDKFQGMFGIHISP----VLPTGTVGSR---------------------------------P---------- 217 (324)
Q Consensus 185 ~~~~~~~~~~~~d~~i~~~~~~----~~~~~~~~~~---------------------------------~---------- 217 (324)
.++++++. .+|+++..+.+. +++.. .... .
T Consensus 159 ~~~~~~~~--~~d~~~~~d~~~~~~~ge~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~ 235 (466)
T TIGR01886 159 DYYFKHEE--TPDFGFSPDAEFPIINGEKGN-FTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKAA 235 (466)
T ss_pred HHHHhcCc--CCCEEEECCCCceeEEEecce-EEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHH
Confidence 99998764 357665433211 01110 0000 0
Q ss_pred ---ccccceee---------EEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHH-------------HHhhc---------
Q 020605 218 ---GPLLAGSG---------RFTAVIKGKGGHAAMPQDTRDPVLAASFAILTL-------------QHIVS--------- 263 (324)
Q Consensus 218 ---g~~~~G~~---------~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l-------------~~~~~--------- 263 (324)
...++|.. |++|+++|+++|+|.|+.|+|||..|++++..+ .++..
T Consensus 236 ~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 315 (466)
T TIGR01886 236 YESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLG 315 (466)
T ss_pred HHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccCC
Confidence 01133433 789999999999999999999999999988873 22110
Q ss_pred --ccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 264 --RETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 264 --~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
........+|+|++.|+||.. | ++|++.+|+|++|.++.+++.++|++.++.
T Consensus 316 ~~~~~~~~g~~S~nvgvI~gG~~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~ 369 (466)
T TIGR01886 316 IAFHDELMGDLAMNAGMFDFDHA-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGG 369 (466)
T ss_pred CcccccCcCceEEEeEEEEEecC-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 011224567999999999865 4 899999999999999999999999998774
No 43
>PRK13381 peptidase T; Provisional
Probab=100.00 E-value=1.7e-36 Score=285.83 Aligned_cols=251 Identities=16% Similarity=0.097 Sum_probs=199.0
Q ss_pred HHHHHHHhccCCCCCc----------chHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC-CC-CEEEEEEecccCCC
Q 020605 57 MRRIRRRIHENPELGF----------EEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG-GE-PWFGLRAEMDALPL 124 (324)
Q Consensus 57 ~~~~~~~l~~ips~s~----------~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~~-~~i~l~~H~DtVp~ 124 (324)
+++.+.++++|||+|+ .+.++++||.++|+++|++....++.+||+|+++++ ++ |+|+|+||+||||+
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp~ 82 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVDV 82 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCCc
Confidence 5677899999999997 478899999999999999644445678999999654 44 89999999999998
Q ss_pred CCC--CCC---cccc------------------------ccCCceeeccc-------hHHHHHHHHHHHHHHhcCCCCCc
Q 020605 125 QEM--VEW---EHKS------------------------KNNGKMHGCGH-------DVHTTILLGAARLLKHRMDRLKG 168 (324)
Q Consensus 125 ~~~--~~~---~~~~------------------------~~~g~~~grG~-------kg~~a~~l~a~~~l~~~~~~~~~ 168 (324)
++. ..| +|+. ..+|++||||+ ||++++++.|++.|.+.+ .+++
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g 161 (404)
T PRK13381 83 GLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-VEHG 161 (404)
T ss_pred cCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-CCCC
Confidence 653 111 1221 23678999883 899999999999998774 4688
Q ss_pred eEEEEEeccCCCc-ccHHHHHHccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCC-CCCCCCC
Q 020605 169 TVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAA-MPQDTRD 246 (324)
Q Consensus 169 ~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~-~p~~g~n 246 (324)
+|.|+|++|||.+ .|++.++.+++ ..|+++++|. +.+...+. .++|..+++|+++|+++|++ .|+.|.|
T Consensus 162 ~i~~~~~~dEE~g~~G~~~~~~~~~--~~d~~~~~~~--~~~~~i~~-----~~~G~~~~~v~v~Gk~aHa~~~p~~g~N 232 (404)
T PRK13381 162 DIVVAFVPDEEIGLRGAKALDLARF--PVDFAYTIDC--CELGEVVY-----ENFNAASAEITITGVTAHPMSAKGVLVN 232 (404)
T ss_pred CEEEEEEcccccccccHHHHHHhcC--CCCEEEEecC--CCcceEEE-----ecCcceEEEEEEEeEecCCCCCcccCcC
Confidence 9999999999954 79999987654 4788887764 33433221 24788999999999999988 4889999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHhh
Q 020605 247 PVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVAY 323 (324)
Q Consensus 247 Ai~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~~ 323 (324)
||..+++++.+|+++..+........+++++.++|+ |++|++++|+|+.|.++.+++.+.|+++++++++.
T Consensus 233 AI~~a~~~i~~l~~~~~~~~~~~~~~~i~v~~i~g~------p~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 303 (404)
T PRK13381 233 PILMANDFISHFPRQETPEHTEGREGYIWVNDLQGN------VNKAKLKLIIRDFDLDGFEARKQFIEEVVAKINAK 303 (404)
T ss_pred HHHHHHHHHHhCCccCCCCCCCCcccEEEEEeEEeC------cceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876433222222346788877763 89999999999999999999999999999987653
No 44
>PRK07318 dipeptidase PepV; Reviewed
Probab=100.00 E-value=1.5e-36 Score=290.96 Aligned_cols=265 Identities=13% Similarity=0.102 Sum_probs=198.6
Q ss_pred HHHHhccCcchHHHHHHHHHHhccCCCCCcc------------hHHHHHHHHHHHhhCCCceEecCCCceEEEEeC-CCC
Q 020605 43 ELLDSAREPEFFEWMRRIRRRIHENPELGFE------------EYETSQLVRSELDSLGIEYTWPVAKTGIVASVG-SGG 109 (324)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~------------e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~-~~~ 109 (324)
++.+++++++ +++++++++|++|||++++ +.++++|+.++|+++|++++... |+++++. ++.
T Consensus 4 ~~~~~~~~~~--~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~---n~~~~~~~~~~ 78 (466)
T PRK07318 4 DWKKEVEKRK--DDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD---NYAGHIEYGEG 78 (466)
T ss_pred hHHHHHHHhH--HHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec---CccceEEECCC
Confidence 3567777777 8999999999999999865 56899999999999999987532 5666543 233
Q ss_pred CCEEEEEEecccCCCCC-CCCCcccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-cc
Q 020605 110 EPWFGLRAEMDALPLQE-MVEWEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GG 183 (324)
Q Consensus 110 ~~~i~l~~H~DtVp~~~-~~~~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G 183 (324)
+|+|+|+||+||||+++ |+..||.. .+||++|||| |||+++++++|++.|++.+..++++|.|+|++|||.+ .|
T Consensus 79 ~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~G 158 (466)
T PRK07318 79 EEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGWKC 158 (466)
T ss_pred CCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCchh
Confidence 48999999999999864 22337764 4689999999 5999999999999999988788899999999999954 69
Q ss_pred HHHHHHccCcCCcceE---------EEeccC-----------------------CCCCCceE------Eee---------
Q 020605 184 AYYMIKEGAVDKFQGM---------FGIHIS-----------------------PVLPTGTV------GSR--------- 216 (324)
Q Consensus 184 ~~~~~~~~~~~~~d~~---------i~~~~~-----------------------~~~~~~~~------~~~--------- 216 (324)
++++++... ..++. +..+++ ++.+++.+ ...
T Consensus 159 ~~~l~~~~~--~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~ 236 (466)
T PRK07318 159 MDYYFEHEE--APDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIA 236 (466)
T ss_pred HHHHHHhCC--CCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHH
Confidence 999998742 11221 221110 11111110 000
Q ss_pred ------ccccccee-----eEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh------h----c------------
Q 020605 217 ------PGPLLAGS-----GRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHI------V----S------------ 263 (324)
Q Consensus 217 ------~g~~~~G~-----~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~------~----~------------ 263 (324)
....++|. .|++|+++|+++|+|.|+.|.|||..|++++.+|+.. . .
T Consensus 237 ~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
T PRK07318 237 AFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLG 316 (466)
T ss_pred HHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCC
Confidence 00123554 3799999999999999999999999999999998641 0 0
Q ss_pred --ccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 264 --RETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 264 --~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
......+..++|++.|+||... .|++.+|+|++|.++.+++.+.|++.+++
T Consensus 317 ~~~~~~~~g~~t~nvg~i~gg~~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~ 369 (466)
T PRK07318 317 IAYEDDVMGDLTMNVGVFSFDEEK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGV 369 (466)
T ss_pred CcccCCCccCeEEEeeEEEEecCc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 0011124579999999997542 79999999999999999999999998765
No 45
>PRK05469 peptidase T; Provisional
Probab=100.00 E-value=1.3e-35 Score=280.32 Aligned_cols=253 Identities=17% Similarity=0.122 Sum_probs=198.1
Q ss_pred HHHHHHHHHhccCCCCCcc----------hHHHHHHHHHHHhhCCCc-eEecCCCceEEEEeCCC---CCCEEEEEEecc
Q 020605 55 EWMRRIRRRIHENPELGFE----------EYETSQLVRSELDSLGIE-YTWPVAKTGIVASVGSG---GEPWFGLRAEMD 120 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~----------e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~---~~~~i~l~~H~D 120 (324)
+++++.++++++|||+|.+ |.++++||+++|+++|++ ++.+ ..+|+++.++++ ++|+|+|+||||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~-~~~~v~~~~~g~~~~~~~~i~l~~H~D 80 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLD-ENGYVMATLPANVDKDVPTIGFIAHMD 80 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEC-CCeEEEEEecCCCCCCCCeEEEEEecc
Confidence 5788999999999999976 889999999999999997 5544 455799999653 259999999999
Q ss_pred cCCCCCC---------------------CCCccccc--------cCCceeecc-------chHHHHHHHHHHHHHHhcCC
Q 020605 121 ALPLQEM---------------------VEWEHKSK--------NNGKMHGCG-------HDVHTTILLGAARLLKHRMD 164 (324)
Q Consensus 121 tVp~~~~---------------------~~~~~~~~--------~~g~~~grG-------~kg~~a~~l~a~~~l~~~~~ 164 (324)
|||+.+. +.|+|.+. .++.+|||| |||++++++.|++.|++.+.
T Consensus 81 ~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~ 160 (408)
T PRK05469 81 TAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE 160 (408)
T ss_pred CCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC
Confidence 9987431 22333211 124577755 58999999999999988766
Q ss_pred CCCceEEEEEeccCCCcccHHHHHHccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCC-CCCC
Q 020605 165 RLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAA-MPQD 243 (324)
Q Consensus 165 ~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~-~p~~ 243 (324)
.++++|.|+|++|||.+.|++.++.++. ..++.+.+++ .+.+.+... ++|..+++|+++|+++|++ .|+.
T Consensus 161 ~~~g~v~~~f~~dEE~g~Ga~~~~~~~~--~~~~~~~~~~---~~~g~~~~~----~~g~~~~~i~v~Gk~~Ha~~~p~~ 231 (408)
T PRK05469 161 IKHGDIRVAFTPDEEIGRGADKFDVEKF--GADFAYTVDG---GPLGELEYE----NFNAASAKITIHGVNVHPGTAKGK 231 (408)
T ss_pred CCCCCEEEEEecccccCCCHHHhhhhhc--CCcEEEEecC---CCcceEEec----cCceeEEEEEEeeecCCCCCCccc
Confidence 6789999999999996678888875543 4577776663 345544332 3678899999999999987 5899
Q ss_pred CCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHhh
Q 020605 244 TRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVAY 323 (324)
Q Consensus 244 g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~~ 323 (324)
|.|||..+++++..|++...+........+++++.++|| |++|++++|+|+.+.++.+++.++|+++++++++.
T Consensus 232 g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~g~i~gg------p~~~~i~~diR~~~~e~~e~i~~~i~~~~~~~~~~ 305 (408)
T PRK05469 232 MVNALLLAADFHAMLPADETPETTEGYEGFYHLTSIKGT------VEEAELSYIIRDFDREGFEARKALMQEIAKKVNAK 305 (408)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCceEEEEEEEEEEc------cceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765432221122345788888876 79999999999999999999999999999997654
No 46
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=100.00 E-value=2.1e-35 Score=278.67 Aligned_cols=254 Identities=15% Similarity=0.091 Sum_probs=196.2
Q ss_pred HHHHHHHHHhccCCCCCc----------chHHHHHHHHHHHhhCCCc-eEecCCCceEEEEeCCCCC---CEEEEEEecc
Q 020605 55 EWMRRIRRRIHENPELGF----------EEYETSQLVRSELDSLGIE-YTWPVAKTGIVASVGSGGE---PWFGLRAEMD 120 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~----------~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~~~---~~i~l~~H~D 120 (324)
+.+++.|.++++|+|.|+ .|.+++++|+++|+++|++ ++.|....||+|++++..+ |+|+|.+|||
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmD 82 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVD 82 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecc
Confidence 577888889999999987 5568999999999999997 8877645689999976533 9999999999
Q ss_pred cCCCCCCC-------------------------CC---cccc--------ccCCceeeccchHHHHHHHHHHHHHHhcCC
Q 020605 121 ALPLQEMV-------------------------EW---EHKS--------KNNGKMHGCGHDVHTTILLGAARLLKHRMD 164 (324)
Q Consensus 121 tVp~~~~~-------------------------~~---~~~~--------~~~g~~~grG~kg~~a~~l~a~~~l~~~~~ 164 (324)
|||..... .| |+.. ..++.+||.+|||++|++|.|++.|++.+.
T Consensus 83 Tv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~ 162 (410)
T TIGR01882 83 TADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE 162 (410)
T ss_pred cCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC
Confidence 99842211 22 3331 235699999999999999999999988644
Q ss_pred CCCceEEEEEeccCCCcccHHHHHHccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCC-CC
Q 020605 165 RLKGTVKLVFQPGEEGYGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMP-QD 243 (324)
Q Consensus 165 ~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p-~~ 243 (324)
.++++|.|+|++|||.+.|++.+..++. +.++.+.++ ++|+|.+... ..|..+++|+++|+++|++.+ +.
T Consensus 163 ~~~g~I~~~ft~dEE~g~Ga~~l~~~~~--~~~~~~~i~---gep~g~i~~~----~~g~~~~~I~v~Gk~aHa~~~~~~ 233 (410)
T TIGR01882 163 IKHGTIRVAFTPDEEIGRGAHKFDVKDF--NADFAYTVD---GGPLGELEYE----TFSAAAAKITIQGNNVHPGTAKGK 233 (410)
T ss_pred CCCCCEEEEEECcccCCcCcchhhhhhc--CccEEEEeC---CCCCCeEEEc----cccceEEEEEEEEEecCcccChHH
Confidence 4689999999999997678888776543 466666665 3566765433 247799999999999999975 68
Q ss_pred CCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHhh
Q 020605 244 TRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVAY 323 (324)
Q Consensus 244 g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~~ 323 (324)
+.||+..+.+++..+...... ..++-+.+.+++|. .|.+|++|++++|+|+.+.++.+++.+.|++++++.+..
T Consensus 234 g~nAi~~a~~~~~~l~~~~~~-----~~t~~~~g~i~~g~-i~giPd~a~l~~diR~~~~e~~e~i~~~i~~i~~~~~~~ 307 (410)
T TIGR01882 234 MINAAQIAIDLHNLLPEDDRP-----EYTEGREGFFHLLS-IDGTVEEAKLHYIIRDFEKENFQERKELMKRIVEKMNNE 307 (410)
T ss_pred HHHHHHHHHHHHHhcCCcCCC-----ccccceeEEEEEEe-EEEecCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987766543111 11111234455553 566999999999999999999999999999999987653
No 47
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=100.00 E-value=4.5e-35 Score=269.81 Aligned_cols=231 Identities=14% Similarity=0.071 Sum_probs=185.8
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccCCCCCCCCCccccccCCc
Q 020605 60 IRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEHKSKNNGK 139 (324)
Q Consensus 60 ~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~ 139 (324)
++++|++|||++++|.++++||+++|+++|+++..+. ..|+++..+++ +|+|+|+|||||||. .|+.. .+||+
T Consensus 2 ~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~-~~~~~~~~~~~-~~~i~~~~H~D~vp~----~~~~~-~~~g~ 74 (336)
T TIGR01902 2 LLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLIIDD-AGNFILGKGDG-HKKILLAGHVDTVPG----YIPVK-IEGGL 74 (336)
T ss_pred hHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEECC-CCcEEEEeCCC-CceEEEEccccccCC----CcccE-EeCCE
Confidence 5889999999999999999999999999999986443 34788876433 599999999999985 24432 45899
Q ss_pred eeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccCcCCcceEEEeccCCCCCCceEEe
Q 020605 140 MHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGS 215 (324)
Q Consensus 140 ~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 215 (324)
+|||| +||++++++.|++.+++. ..+|.|+|++|||. +.|++++++... .+++++.|++. .+.+
T Consensus 75 i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~ii~ept~---~~~i-- 142 (336)
T TIGR01902 75 LYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGAREVIDKNY---PFYVIVGEPSG---AEGI-- 142 (336)
T ss_pred EEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHHHHHhhcC---CCEEEEecCCC---Ccce--
Confidence 99999 489999999999999764 35899999999995 469999998753 35777765421 1111
Q ss_pred ecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCeEEEE
Q 020605 216 RPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFG 295 (324)
Q Consensus 216 ~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~ 295 (324)
..+++|..+++++++|+++|+|.|+ ||+..+.+++..|.+..... ......+++++.++||...|+||++|+++
T Consensus 143 --~~~~kG~~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i~gg~~~nvIP~~a~~~ 216 (336)
T TIGR01902 143 --TLGYKGSLQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIEVYKQP-ENYDKPSIVPTIIRFGESYNDTPAKLELH 216 (336)
T ss_pred --eeeeeeEEEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHHHhccc-cCCCCCcceeEEEEccCCCcCCCceEEEE
Confidence 2345899999999999999999875 48999999999987322111 11224578899999999999999999999
Q ss_pred EEEecCChhhHHHHHHHHHH
Q 020605 296 GTFRSLTTEGLLYLEQRIKE 315 (324)
Q Consensus 296 ~d~R~~~~~~~~~~~~~i~~ 315 (324)
+|+|++|.++.+++.++|++
T Consensus 217 idiR~~p~~~~~~~~~~i~~ 236 (336)
T TIGR01902 217 FDLRYPPNNKPEEAIKEITD 236 (336)
T ss_pred EEEeeCCCCCHHHHHHHHHh
Confidence 99999999999999888875
No 48
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=259.54 Aligned_cols=262 Identities=17% Similarity=0.162 Sum_probs=210.1
Q ss_pred HHHHHHHHHhccCCCCCcc--hH-HHHHHHHHHHhhCCCceEe---cCCCceEEEEeCCCC--CCEEEEEEecccCCCCC
Q 020605 55 EWMRRIRRRIHENPELGFE--EY-ETSQLVRSELDSLGIEYTW---PVAKTGIVASVGSGG--EPWFGLRAEMDALPLQE 126 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~--e~-~~~~~l~~~l~~~G~~~~~---~~~~~nvia~~~~~~--~~~i~l~~H~DtVp~~~ 126 (324)
...+..++++++||++-.+ -. .+++|+.+..+.+|..++. ..+.++++.+|.|++ -++|+|++|+||||+-.
T Consensus 25 ~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f~ 104 (420)
T KOG2275|consen 25 NISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVFR 104 (420)
T ss_pred chHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCCc
Confidence 5667778999999988543 23 7899999999999998754 456788999997763 48999999999999843
Q ss_pred CCCC---cccc--ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc--ccHHHHHHccCcCCc
Q 020605 127 MVEW---EHKS--KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY--GGAYYMIKEGAVDKF 196 (324)
Q Consensus 127 ~~~~---~~~~--~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~~~~ 196 (324)
+ .| ||.. .+||.||||| +|+..+++|.|++.|+..+.+++++|.+.|++|||.+ .|++.+.+...+++.
T Consensus 105 e-~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~l 183 (420)
T KOG2275|consen 105 E-KWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKKL 183 (420)
T ss_pred c-cCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhccc
Confidence 3 66 5543 3689999999 4889999999999999999999999999999999944 589988884445666
Q ss_pred ceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcc---------cCC
Q 020605 197 QGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSR---------ETD 267 (324)
Q Consensus 197 d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~---------~~~ 267 (324)
...++++.+...++.. .+.+.+++|..|++++++|++||+|.|.. ..|+..+.+++..+.+.... ...
T Consensus 184 ~~~filDEG~~se~d~--~~vfyaEkg~w~~~v~~~G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~ 260 (420)
T KOG2275|consen 184 NLGFILDEGGATENDF--ATVFYAEKGPWWLKVTANGTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKLA 260 (420)
T ss_pred ceeEEecCCCCCcccc--eeEEEEeeceeEEEEEecCCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCcee
Confidence 7777777542233333 34455678999999999999999998533 26788888888888776521 112
Q ss_pred CCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHH-HHHHHHH
Q 020605 268 PLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRI-KEVKLFE 320 (324)
Q Consensus 268 ~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i-~~~i~~~ 320 (324)
..+.+|+|++.|+||.+.|++|..+++.+|+|..+..+..++.+++ ++++++.
T Consensus 261 ~~~vtT~Nv~~i~GGv~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~~ 314 (420)
T KOG2275|consen 261 LGDVTTINVGIINGGVQSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEA 314 (420)
T ss_pred ccceeEEeeeeeecccccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhhc
Confidence 3568999999999999999999999999999999999999999999 7766654
No 49
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=6.5e-35 Score=275.94 Aligned_cols=248 Identities=18% Similarity=0.117 Sum_probs=193.0
Q ss_pred HHHHHHHHHhccCCC---------CCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCC-CCCCEEEEEEecccCCC
Q 020605 55 EWMRRIRRRIHENPE---------LGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGS-GGEPWFGLRAEMDALPL 124 (324)
Q Consensus 55 ~~~~~~~~~l~~ips---------~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~-~~~~~i~l~~H~DtVp~ 124 (324)
+++++.+.+|++|+| .+++|.++++||.++|+++|++++.+ ...|+++++++ +++|+|+|+||+||||+
T Consensus 10 ~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nl~a~~~g~~~~~~l~l~gH~DtVp~ 88 (412)
T PRK12892 10 QRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID-GIGNVFGRLPGPGPGPALLVGSHLDSQNL 88 (412)
T ss_pred HHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCeEEEEccccCCCC
Confidence 678888888888866 56678999999999999999999864 45589999976 34589999999999997
Q ss_pred CCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHHHHHccCc-----
Q 020605 125 QEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYYMIKEGAV----- 193 (324)
Q Consensus 125 ~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~~~~~~~~----- 193 (324)
+ |+.|| +++++++|.|++.|++.+..++++|.|++++|||++ .|++.++.+...
T Consensus 89 ~------------g~~dg---~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~ 153 (412)
T PRK12892 89 G------------GRYDG---ALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADALA 153 (412)
T ss_pred C------------Ccccc---hHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHHh
Confidence 4 34455 458999999999999988888999999999999963 388888742100
Q ss_pred ------------------CCcceEEEeccC-----------CC---CCCceEEeecccccceeeEEEEEEEecCCCCCC-
Q 020605 194 ------------------DKFQGMFGIHIS-----------PV---LPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAM- 240 (324)
Q Consensus 194 ------------------~~~d~~i~~~~~-----------~~---~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~- 240 (324)
...|+++..+++ .+ ++.+. .......++|..+++|+++|+++|++.
T Consensus 154 ~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~-~~~i~~~~kG~~~~~i~v~G~~aHa~~~ 232 (412)
T PRK12892 154 ARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGL-PVGVVTGIVGIWQYRITVTGEAGHAGTT 232 (412)
T ss_pred CccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCC-cEEEEEEeccceEEEEEEEEECCCCCCC
Confidence 012333332221 10 11121 001123458999999999999999984
Q ss_pred CC-CCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcC-CCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHH
Q 020605 241 PQ-DTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAG-QAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKL 318 (324)
Q Consensus 241 p~-~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg-~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~ 318 (324)
|+ .|.|||..+++++.+|+++..+.. .+.++|++.|+|| .+.|+||++|++++|+|++|.++.+++.++|+++++
T Consensus 233 p~~~g~nAi~~a~~~i~~l~~~~~~~~---~~~~~~vg~i~gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 309 (412)
T PRK12892 233 PMALRRDAGLAAAEMIAAIDEHFPRVC---GPAVVTVGRVALDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCR 309 (412)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHhcC---CCcEEEEEEEEecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 65 689999999999999988643321 2379999999986 799999999999999999999999999999999998
Q ss_pred HHHh
Q 020605 319 FEVA 322 (324)
Q Consensus 319 ~~a~ 322 (324)
..+.
T Consensus 310 ~~~~ 313 (412)
T PRK12892 310 EIAR 313 (412)
T ss_pred HHHH
Confidence 8654
No 50
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=100.00 E-value=1e-34 Score=277.59 Aligned_cols=245 Identities=15% Similarity=0.128 Sum_probs=194.7
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCC--C--CCCEEEEEEecccCCCCCC---
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGS--G--GEPWFGLRAEMDALPLQEM--- 127 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~--~--~~~~i~l~~H~DtVp~~~~--- 127 (324)
+++++++++|++|||+|++|.++++|+.++++++|++++.+..+ |+++++++ + ..|+|+|.|||||||+++.
T Consensus 10 ~~~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d~~g-nvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~ 88 (485)
T PRK15026 10 QPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVG-NILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTV 88 (485)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecC-eEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCcc
Confidence 78999999999999999999999999999999999999876544 68888743 2 3489999999999998642
Q ss_pred ---CCCcccc-ccCCceeeccc------hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCc
Q 020605 128 ---VEWEHKS-KNNGKMHGCGH------DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKF 196 (324)
Q Consensus 128 ---~~~~~~~-~~~g~~~grG~------kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~ 196 (324)
+..||.. .+||++||||. |++++++|.++ .+.+. .+++|.++|++|||.+ .|++.+... . .+.
T Consensus 89 ~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~~-~-~~~ 162 (485)
T PRK15026 89 HDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADENV-VHGPLEVLLTMTEEAGMDGAFGLQSN-W-LQA 162 (485)
T ss_pred ccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCCC-CCCCEEEEEEcccccCcHhHHHhhhc-c-CCc
Confidence 2346754 45889999983 56777776665 44443 4789999999999955 699988653 3 368
Q ss_pred ceEEEeccCCCCCCceE-Eeecc-------------cccceeeEEEEEEEe-cCCCCC-CCCCCC-CHHHHHHHHHHHHH
Q 020605 197 QGMFGIHISPVLPTGTV-GSRPG-------------PLLAGSGRFTAVIKG-KGGHAA-MPQDTR-DPVLAASFAILTLQ 259 (324)
Q Consensus 197 d~~i~~~~~~~~~~~~~-~~~~g-------------~~~~G~~~~~i~~~G-~~~Hs~-~p~~g~-nAi~~l~~~l~~l~ 259 (324)
++++++|++. .|.+ ....| ...+|..+++|+++| +++||+ .|+.|+ |||..|+++|.++.
T Consensus 163 ~~~i~~e~~~---~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~ 239 (485)
T PRK15026 163 DILINTDSEE---EGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHA 239 (485)
T ss_pred CEEEEeCCCC---CCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhH
Confidence 9999988642 2322 11111 012477899999999 999999 699999 99999999999954
Q ss_pred HhhcccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 260 HIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
. .++++++.|+||++.|+||++|++.+++|....+..+++.+.+++.+.+
T Consensus 240 ~----------~~~~~v~~i~GG~~~NaIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~~~ 289 (485)
T PRK15026 240 E----------ELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQEILKN 289 (485)
T ss_pred h----------hCCeEEEEEeCCCccCCCCCCcEEEEEEChhHHHHHHHHHHHHHHHHHH
Confidence 1 2689999999999999999999999999988888888888877776654
No 51
>PRK06156 hypothetical protein; Provisional
Probab=100.00 E-value=3e-34 Score=277.96 Aligned_cols=257 Identities=15% Similarity=0.141 Sum_probs=191.3
Q ss_pred HHHHHHHHHhccCCCCCc-----ch----HHHHHHHHHHHhhCCCceEecCCCceEE-EEeCCCCCCEEEEEEecccCCC
Q 020605 55 EWMRRIRRRIHENPELGF-----EE----YETSQLVRSELDSLGIEYTWPVAKTGIV-ASVGSGGEPWFGLRAEMDALPL 124 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~-----~e----~~~~~~l~~~l~~~G~~~~~~~~~~nvi-a~~~~~~~~~i~l~~H~DtVp~ 124 (324)
+++++++++|++|||++. +| ..+++|+.++|+++|++++. .+++++ +++++...|+|+|+|||||||+
T Consensus 46 ~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~--~~~~v~~~~~~g~~~~~l~l~gH~DvVp~ 123 (520)
T PRK06156 46 AAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRN--VDNRVLEIGLGGSGSDKVGILTHADVVPA 123 (520)
T ss_pred HHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEe--cCCeEEEEEecCCCCCeEEEEEecCccCC
Confidence 899999999999999974 23 35679999999999999863 233444 6776544589999999999998
Q ss_pred CC--CCC-----Ccccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCC-cccHHHHHHccC
Q 020605 125 QE--MVE-----WEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEG-YGGAYYMIKEGA 192 (324)
Q Consensus 125 ~~--~~~-----~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G~~~~~~~~~ 192 (324)
+. |+. .||.. .+||++|||| +||++++++.|++.|.+.+.+++++|.|+|++|||. +.|++.+++.+.
T Consensus 124 ~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~ 203 (520)
T PRK06156 124 NPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT 203 (520)
T ss_pred CCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC
Confidence 54 333 45654 3589999999 489999999999999988877889999999999994 569999988754
Q ss_pred cCCcceEEEeccCC----CCCCc-----------------------------------eEEeecc---------------
Q 020605 193 VDKFQGMFGIHISP----VLPTG-----------------------------------TVGSRPG--------------- 218 (324)
Q Consensus 193 ~~~~d~~i~~~~~~----~~~~~-----------------------------------~~~~~~g--------------- 218 (324)
..+++++++.+. +++.. .+.....
T Consensus 204 --~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~ 281 (520)
T PRK06156 204 --PPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAA 281 (520)
T ss_pred --CCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHH
Confidence 345544332110 11100 0000000
Q ss_pred --cccceee---------EEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcc-----------------------
Q 020605 219 --PLLAGSG---------RFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSR----------------------- 264 (324)
Q Consensus 219 --~~~~G~~---------~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~----------------------- 264 (324)
..++|.. |++|+++|+++|+|.|+.|.|||..+++++.+|++....
T Consensus 282 ~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~ 361 (520)
T PRK06156 282 QVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKF 361 (520)
T ss_pred HHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcC
Confidence 0012333 899999999999999999999999999999998752100
Q ss_pred ----cCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHH
Q 020605 265 ----ETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEV 321 (324)
Q Consensus 265 ----~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a 321 (324)
.....+..+++++.|.+|. +.|++++|+|++|.++.+++.+.|++.+++.+
T Consensus 362 g~~~~~~~~g~~t~~~~~I~gg~------~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~ 416 (520)
T PRK06156 362 GVAYKDDFMGPLTLSPTVVGQDD------KGTEVTVNLRRPVGKTPELLKGEIADALAAWQ 416 (520)
T ss_pred CccccCCCccCcEEeeeEEEEeC------CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 0011245678888888876 58999999999999999999999999988753
No 52
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=2.8e-34 Score=271.52 Aligned_cols=246 Identities=20% Similarity=0.216 Sum_probs=193.0
Q ss_pred HHHHHHHHHhccC----------CCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC--CCCEEEEEEecccC
Q 020605 55 EWMRRIRRRIHEN----------PELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG--GEPWFGLRAEMDAL 122 (324)
Q Consensus 55 ~~~~~~~~~l~~i----------ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~DtV 122 (324)
+.+++++++|++| ||+|++|.++++||.++|+++|++++.+ ..+|++++++++ ++|+|+|+||+|||
T Consensus 7 ~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~-~~~nl~a~~~g~~~~~~~l~l~gH~DtV 85 (413)
T PRK09290 7 ERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD-AVGNLFGRLEGRDPDAPAVLTGSHLDTV 85 (413)
T ss_pred HHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCCEEEEecCccCC
Confidence 6777778888877 3778889999999999999999999864 456899999753 35899999999999
Q ss_pred CCCCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHHHHHc------
Q 020605 123 PLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYYMIKE------ 190 (324)
Q Consensus 123 p~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~~~~~------ 190 (324)
|++. .. ++|+++|+++.|++.|++.+..++++|.|+|++|||.+ .|++.+++.
T Consensus 86 p~~g------------~~---d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~ 150 (413)
T PRK09290 86 PNGG------------RF---DGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDA 150 (413)
T ss_pred CCCC------------Cc---CCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHH
Confidence 9742 22 23789999999999999888778899999999999963 377766532
Q ss_pred ------------------cCcCCcceEEEe--ccCCC--------------CCCceEEeecccccceeeEEEEEEEecCC
Q 020605 191 ------------------GAVDKFQGMFGI--HISPV--------------LPTGTVGSRPGPLLAGSGRFTAVIKGKGG 236 (324)
Q Consensus 191 ------------------~~~~~~d~~i~~--~~~~~--------------~~~~~~~~~~g~~~~G~~~~~i~~~G~~~ 236 (324)
++ +.|++++. +|+.. +|++.. ......++|..+++|+++|+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~--~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~-~~i~~~~kG~~~~~i~v~Gk~a 227 (413)
T PRK09290 151 LALRDADGVSFAEALAAIGY--DGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLP-IGVVTGIVGQRRYRVTFTGEAN 227 (413)
T ss_pred HhccCCCCCCHHHHHHHcCC--ChhhccccccCCCCccEEEEEEeccCHHHHHCCCc-EEEEeeeeccEEEEEEEEEECC
Confidence 22 34555432 22110 122110 1112356899999999999999
Q ss_pred CCC-CC-CCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcC-CCCcccCCeEEEEEEEecCChhhHHHHHHHH
Q 020605 237 HAA-MP-QDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAG-QAGNIIPEIVRFGGTFRSLTTEGLLYLEQRI 313 (324)
Q Consensus 237 Hs~-~p-~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg-~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i 313 (324)
|+| .| +.|.|||..+++++..|+++..+.. ...+++++.+++| ...|+||++|++++|+|++|.++.+++.++|
T Consensus 228 Has~~P~~~g~NAI~~~~~~i~~l~~l~~~~~---~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i 304 (413)
T PRK09290 228 HAGTTPMALRRDALLAAAEIILAVERIAAAHG---PDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAEL 304 (413)
T ss_pred CCCCCCchhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHH
Confidence 998 68 5899999999999999987653221 2468999999975 7999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 020605 314 KEVKLFEVA 322 (324)
Q Consensus 314 ~~~i~~~a~ 322 (324)
++++++.+.
T Consensus 305 ~~~~~~~~~ 313 (413)
T PRK09290 305 RAAAEAIAA 313 (413)
T ss_pred HHHHHHHHH
Confidence 999988654
No 53
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=6.8e-34 Score=268.96 Aligned_cols=248 Identities=19% Similarity=0.214 Sum_probs=193.7
Q ss_pred HHHHHHHHHhccCCCC----------CcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC--CCCEEEEEEecccC
Q 020605 55 EWMRRIRRRIHENPEL----------GFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG--GEPWFGLRAEMDAL 122 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~----------s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~DtV 122 (324)
+++++++++|++|||. |++|.++++||.++|+++|++++.+ ...|++++++++ ++|+|+|.||+|||
T Consensus 10 ~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~a~~~g~~~~~~~l~l~~H~DtV 88 (412)
T PRK12893 10 ERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD-AIGNLFGRRAGTDPDAPPVLIGSHLDTQ 88 (412)
T ss_pred HHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEeCCCCCCCCEEEEEecccCC
Confidence 7889999999999964 4458999999999999999999864 345899999653 25899999999999
Q ss_pred CCCCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHHHHHccCc---
Q 020605 123 PLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYYMIKEGAV--- 193 (324)
Q Consensus 123 p~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~~~~~~~~--- 193 (324)
|++ |.+|| |++++++|.|++.|++.+..++++|.|+|++|||++ .|+..+......
T Consensus 89 p~~------------g~~dg---k~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~~ 153 (412)
T PRK12893 89 PTG------------GRFDG---ALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDDA 153 (412)
T ss_pred CCC------------Ccccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCChHHH
Confidence 974 33444 679999999999999988778999999999999964 377777643210
Q ss_pred ----------------------------CCcceEEEeccCCCC---CCceEEeecccccceeeEEEEEEEecCCCCCC-C
Q 020605 194 ----------------------------DKFQGMFGIHISPVL---PTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAM-P 241 (324)
Q Consensus 194 ----------------------------~~~d~~i~~~~~~~~---~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~-p 241 (324)
.+.+..+.++.+++. +.+. .......++|..+++|+++|+++|+|. |
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~kG~~~~~i~v~G~~aHas~~p 232 (412)
T PRK12893 154 LARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGL-PIGVVTGIQGIRWLEVTVEGQAAHAGTTP 232 (412)
T ss_pred HhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCC-cEEEEeeecccEEEEEEEEEECCCcCCCc
Confidence 012233333332210 0000 011123468999999999999999985 8
Q ss_pred C-CCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEc-CCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 242 Q-DTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDA-GQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 242 ~-~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~g-g~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
+ .|.|||..+++++.+|+++..+.. ...++|++.++| |...|+||++|++++|+|++|.++.+++.+.|++++++
T Consensus 233 ~~~G~NAI~~a~~~i~~l~~~~~~~~---~~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~ 309 (412)
T PRK12893 233 MAMRRDALVAAARIILAVERIAAALA---PDGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAK 309 (412)
T ss_pred chhccCHHHHHHHHHHHHHHHHHhcC---CCceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 4 799999999999999988754321 246899999998 47999999999999999999999999999999999988
Q ss_pred HHh
Q 020605 320 EVA 322 (324)
Q Consensus 320 ~a~ 322 (324)
.+.
T Consensus 310 ~~~ 312 (412)
T PRK12893 310 IAA 312 (412)
T ss_pred HHH
Confidence 654
No 54
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=100.00 E-value=7.2e-34 Score=270.13 Aligned_cols=254 Identities=16% Similarity=0.107 Sum_probs=185.4
Q ss_pred HHHHHHHHHhccCCCCCcc------------hHHHHHHHHHHHhhCCCceEecCCCceEE--EEeCCCCCCEEEEEEecc
Q 020605 55 EWMRRIRRRIHENPELGFE------------EYETSQLVRSELDSLGIEYTWPVAKTGIV--ASVGSGGEPWFGLRAEMD 120 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~------------e~~~~~~l~~~l~~~G~~~~~~~~~~nvi--a~~~~~~~~~i~l~~H~D 120 (324)
+++++++++|++|||++.+ +.++++|+.++|+++|++++... |+. +.+++ ..|+|+|+||+|
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~---~~~~~~~~~~-~~~~l~l~gH~D 77 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVD---NYAGYAEYGQ-GEEYLGILGHLD 77 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEec---CceEEEEeCC-CCCeEEEEeecC
Confidence 5789999999999999832 36899999999999999987422 333 33432 348999999999
Q ss_pred cCCCCC-CCCCcccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcC
Q 020605 121 ALPLQE-MVEWEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVD 194 (324)
Q Consensus 121 tVp~~~-~~~~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~ 194 (324)
|||+++ |...||.. .+||++|||| |||++++++.|++.|++.+.+++++|.|+|++|||.+ .|+..+++.....
T Consensus 78 ~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~ 157 (447)
T TIGR01887 78 VVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEEAP 157 (447)
T ss_pred CCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcCCC
Confidence 999865 23336765 4589999999 4899999999999999888778999999999999954 5888888763211
Q ss_pred ----Ccce---EEEeccC----------------------CCCCCceEEe--ecccccc-------------------ee
Q 020605 195 ----KFQG---MFGIHIS----------------------PVLPTGTVGS--RPGPLLA-------------------GS 224 (324)
Q Consensus 195 ----~~d~---~i~~~~~----------------------~~~~~~~~~~--~~g~~~~-------------------G~ 224 (324)
..|. ++..+++ .++|++.+.. .....++ |.
T Consensus 158 ~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~ 237 (447)
T TIGR01887 158 DIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGS 237 (447)
T ss_pred CEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceE
Confidence 1121 2222211 1334433210 0000111 44
Q ss_pred e-----EEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH--Hhhcc---------------c-------CCCCCCceEE
Q 020605 225 G-----RFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQ--HIVSR---------------E-------TDPLEARVVT 275 (324)
Q Consensus 225 ~-----~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~--~~~~~---------------~-------~~~~~~~~~~ 275 (324)
. +++|+++|+++|+|.|+.|.|||..+++++.++. +.... . ....+.+++|
T Consensus 238 ~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~n 317 (447)
T TIGR01887 238 FEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMN 317 (447)
T ss_pred EEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEE
Confidence 4 7999999999999999999999999999999986 21100 0 0112457899
Q ss_pred EEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHH
Q 020605 276 VGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVK 317 (324)
Q Consensus 276 v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i 317 (324)
++.|+|| +|++|++++|+|++|+++.+++.+++.+.+
T Consensus 318 vg~I~~g-----~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~ 354 (447)
T TIGR01887 318 VGVIDYE-----NAEAGLIGLNVRYPVGNDPDTMLKNELAKE 354 (447)
T ss_pred EEEEEEe-----CCcEEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence 9999988 389999999999999999998777776443
No 55
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=3.1e-33 Score=264.36 Aligned_cols=234 Identities=20% Similarity=0.165 Sum_probs=185.1
Q ss_pred CCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC-C-CCEEEEEEecccCCCCCCCCCccccccCCceeeccc
Q 020605 68 PELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG-G-EPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGH 145 (324)
Q Consensus 68 ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~ 145 (324)
++.+++|.++++||.++|+++|++++.+.. .|+++++++. + +|+|+|+||+||||.+. . .++
T Consensus 33 ~~~~~~e~~~~~~l~~~l~~~G~~v~~~~~-gNl~a~~~g~~~~~~~l~~~~H~DtVp~gg------------~---~D~ 96 (414)
T PRK12891 33 LALTDGDREARDLFVAWARDAGCTVRVDAM-GNLFARRAGRDPDAAPVMTGSHADSQPTGG------------R---YDG 96 (414)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEECCC-CCEEEEecCCCCCCCeEEEEecccCCCCCc------------c---ccc
Confidence 344667899999999999999999987644 4899999664 2 48999999999999742 1 246
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHHH------------------------HHccCc--
Q 020605 146 DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYYM------------------------IKEGAV-- 193 (324)
Q Consensus 146 kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~~------------------------~~~~~~-- 193 (324)
|+++++++.|++.|++.+..++++|.|++++|||++ .|+..+ .+.|+.
T Consensus 97 k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 176 (414)
T PRK12891 97 IYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGA 176 (414)
T ss_pred hhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcc
Confidence 899999999999999999889999999999999964 266533 344431
Q ss_pred -----CCcceEEEeccCCC---CCCc-eEEeecccccceeeEEEEEEEecCCCCC-CCC-CCCCHHHHHHHHHHHHHHhh
Q 020605 194 -----DKFQGMFGIHISPV---LPTG-TVGSRPGPLLAGSGRFTAVIKGKGGHAA-MPQ-DTRDPVLAASFAILTLQHIV 262 (324)
Q Consensus 194 -----~~~d~~i~~~~~~~---~~~~-~~~~~~g~~~~G~~~~~i~~~G~~~Hs~-~p~-~g~nAi~~l~~~l~~l~~~~ 262 (324)
+..++.+.++++++ ++.+ .+.+ ...++|..+++|+++|+++|+| .|+ .|.|||..+++++..|+++.
T Consensus 177 ~~~~~~~~~~~~e~h~e~g~vle~~~~~~~i--v~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~ 254 (414)
T PRK12891 177 EPVGGYPVHAAYELHIEQGAILERAGKTIGV--VTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALG 254 (414)
T ss_pred cccccCCCCEEEEEEeCCCHHHHHCCCcEEE--EeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHH
Confidence 12234555555543 1112 1111 1345799999999999999998 586 58999999999999998875
Q ss_pred cccCCCCCCceEEEEEEEcC-CCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 263 SRETDPLEARVVTVGFIDAG-QAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 263 ~~~~~~~~~~~~~v~~i~gg-~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
... ....++|++.|+|| .+.|+||++|++++|+|++|.++.+++.++|++++++.+.
T Consensus 255 ~~~---~~~~t~~vg~I~gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~ 312 (414)
T PRK12891 255 RRD---APDARATVGMIDARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIAD 312 (414)
T ss_pred Hhc---CCCeEEEEEEEEeeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 421 13469999999997 6999999999999999999999999999999999988754
No 56
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=100.00 E-value=5.9e-33 Score=266.78 Aligned_cols=250 Identities=16% Similarity=0.119 Sum_probs=194.2
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC----CCCEEEEEEecccCCCCCC---
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG----GEPWFGLRAEMDALPLQEM--- 127 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~----~~~~i~l~~H~DtVp~~~~--- 127 (324)
+++++++++|++|||+|++|.++++|+.++|+++|++++++.. .|+++++++. .+|+|+|.||+||||++..
T Consensus 4 ~~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~-~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~ 82 (477)
T TIGR01893 4 SRVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDEV-GNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSL 82 (477)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeCC-CeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCC
Confidence 6788999999999999999999999999999999999987654 4799998542 2489999999999998642
Q ss_pred CCC---cccc-ccCCceeeccc------hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCc
Q 020605 128 VEW---EHKS-KNNGKMHGCGH------DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKF 196 (324)
Q Consensus 128 ~~~---~~~~-~~~g~~~grG~------kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~ 196 (324)
..| ||.. .+||++||||. |++++++|.+++. .+ ..+++|.++|++|||++ .|++.+..... ..
T Consensus 83 ~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~-~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~--~~ 156 (477)
T TIGR01893 83 HDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NN-LKHPPLELLFTVDEETGMDGALGLDENWL--SG 156 (477)
T ss_pred CCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CC-CCCCCEEEEEEeccccCchhhhhcChhhc--CC
Confidence 245 5654 45899999993 5788888877654 33 35679999999999954 69999876543 34
Q ss_pred ceEEEeccCC------CCCCce-E--E--eecccccceeeEEEEEEEe-cCCCCC-CCCCCC-CHHHHHHHHHHHHHHhh
Q 020605 197 QGMFGIHISP------VLPTGT-V--G--SRPGPLLAGSGRFTAVIKG-KGGHAA-MPQDTR-DPVLAASFAILTLQHIV 262 (324)
Q Consensus 197 d~~i~~~~~~------~~~~~~-~--~--~~~g~~~~G~~~~~i~~~G-~~~Hs~-~p~~g~-nAi~~l~~~l~~l~~~~ 262 (324)
++++..+... +.+.+. . . ......++|..+++|+++| +++||| .|+.+. ||+..++++|.++++..
T Consensus 157 ~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~ 236 (477)
T TIGR01893 157 KILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL 236 (477)
T ss_pred cEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC
Confidence 6666655311 011110 0 0 0001114788999999999 999998 588884 99999999999998642
Q ss_pred cccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHH
Q 020605 263 SRETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEV 321 (324)
Q Consensus 263 ~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a 321 (324)
..+++.+.||.+.|+||++|++++|+|.......+.+.+.+.+.+++.+
T Consensus 237 ----------~~~v~~~~gg~~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~~ 285 (477)
T TIGR01893 237 ----------NFRLSDIKGGSKRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSEY 285 (477)
T ss_pred ----------CeEEEEEeCCCcccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999888888888888877776654
No 57
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=2.8e-32 Score=258.05 Aligned_cols=237 Identities=20% Similarity=0.186 Sum_probs=182.0
Q ss_pred hccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC--CCCEEEEEEecccCCCCCCCCCccccccCCcee
Q 020605 64 IHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG--GEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMH 141 (324)
Q Consensus 64 l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~ 141 (324)
.+.+||.+++|.++++||.++|+++|++++.+ .+.|+++++++. ++|+|+|+|||||||++ |..
T Consensus 27 ~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nlia~~~g~~~~~~~l~~~~H~DtVp~~------------g~~- 92 (414)
T PRK12890 27 GWTRLALSDEERAARALLAAWMRAAGLEVRRD-AAGNLFGRLPGRDPDLPPLMTGSHLDTVPNG------------GRY- 92 (414)
T ss_pred ceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc-CCCcEEEEeCCCCCCCCEEEEeCcccCCCCC------------CCc-
Confidence 33455788999999999999999999999875 345899999764 35899999999999974 221
Q ss_pred eccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHHHHHc------------------------c
Q 020605 142 GCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYYMIKE------------------------G 191 (324)
Q Consensus 142 grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~~~~~------------------------~ 191 (324)
++|+++++++.+++.|++.+..++++|.|++++|||++ .|++++.+. |
T Consensus 93 --D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 170 (414)
T PRK12890 93 --DGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIG 170 (414)
T ss_pred --CCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcC
Confidence 34789999999999999888778999999999999953 366555432 2
Q ss_pred CcCCcceEEE-------------eccCCCC---CCceEEeecccccceeeEEEEEEEecCCCCCC-CC-CCCCHHHHHHH
Q 020605 192 AVDKFQGMFG-------------IHISPVL---PTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAM-PQ-DTRDPVLAASF 253 (324)
Q Consensus 192 ~~~~~d~~i~-------------~~~~~~~---~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~-p~-~g~nAi~~l~~ 253 (324)
+ ..|++.. +|.+.+. +.+. .......++|..+++|+++|+++|+|. |+ .+.|||..+++
T Consensus 171 ~--~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~-~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~ 247 (414)
T PRK12890 171 G--DPDALPGALRPPGAVAAFLELHIEQGPVLEAEGL-PIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAE 247 (414)
T ss_pred C--ChhhccccccCCCCccEEEEEeeCcCHHHHhCCC-ceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHH
Confidence 1 1232221 1111100 0000 001123458999999999999999985 85 45899999999
Q ss_pred HHHHHHHhhcccCCCCCCceEEEEEEEc-CCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 254 AILTLQHIVSRETDPLEARVVTVGFIDA-GQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 254 ~l~~l~~~~~~~~~~~~~~~~~v~~i~g-g~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
++.+|+++..+.. ...+++++.|++ |.+.|+||++|++++|+|++|.++.+++.++|++++++.+.
T Consensus 248 ~i~~l~~~~~~~~---~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~ 314 (414)
T PRK12890 248 LVTAMERRARALL---HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAA 314 (414)
T ss_pred HHHHHHHHHHhcC---CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998754322 357889999997 58999999999999999999999999999999999988654
No 58
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=100.00 E-value=3e-31 Score=249.83 Aligned_cols=237 Identities=20% Similarity=0.221 Sum_probs=183.3
Q ss_pred cCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC-C-CCEEEEEEecccCCCCCCCCCccccccCCceeec
Q 020605 66 ENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG-G-EPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGC 143 (324)
Q Consensus 66 ~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~gr 143 (324)
...|.+++|.++++||+++|+++|++++.+. ..|++++++++ + +|+|+|+||+||||.+ |+.+|+
T Consensus 22 ~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~~-~~nl~a~~~g~~~~~~~l~~~~H~DtV~~g------------g~~dg~ 88 (401)
T TIGR01879 22 TRLALSPEDREAQDLFKKRMRAAGLEVRFDE-VGNLIGRKEGTEPPLEVVLSGSHIDTVVNG------------GNFDGQ 88 (401)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHCCCEEEEec-CCcEEEEecCCCCCCCEEEEecccccCCCC------------CccCCH
Confidence 3445678899999999999999999998754 45899999764 2 4899999999999974 444443
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHHHHHccC------c------------------
Q 020605 144 GHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYYMIKEGA------V------------------ 193 (324)
Q Consensus 144 G~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~~~~~~~------~------------------ 193 (324)
.+++++|.+++.|++.+.+++++|.|++++|||++ .|++.++.... +
T Consensus 89 ---~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~ 165 (401)
T TIGR01879 89 ---LGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPD 165 (401)
T ss_pred ---HHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCC
Confidence 47899999999999999889999999999999962 47777753210 0
Q ss_pred ---------CCcceEEEeccCCCCC---CceEEeecccccceeeEEEEEEEecCCCCCC-CC-CCCCHHHHHHHHHHHHH
Q 020605 194 ---------DKFQGMFGIHISPVLP---TGTVGSRPGPLLAGSGRFTAVIKGKGGHAAM-PQ-DTRDPVLAASFAILTLQ 259 (324)
Q Consensus 194 ---------~~~d~~i~~~~~~~~~---~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~-p~-~g~nAi~~l~~~l~~l~ 259 (324)
.++++.+.+|.+++.- .|.. ......++|..|++|+++|+++|++. |+ .+.||+..+++++..|+
T Consensus 166 ~~~~~~~~~~~~~~~~e~Hieqg~~l~~~g~~-~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~ 244 (401)
T TIGR01879 166 LPNQPLRPRGDIKAYVELHIEQGPVLESNGQP-IGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVE 244 (401)
T ss_pred cccccccccccccEEEEEEEcCCcChhhCCCe-EEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 0123344444443211 1110 11123457999999999999999985 53 58999999999999998
Q ss_pred HhhcccCCCCCCceEEEEEEEcC-CCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHh
Q 020605 260 HIVSRETDPLEARVVTVGFIDAG-QAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVA 322 (324)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~gg-~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~ 322 (324)
++..+.. .+.+.+++.|++| .+.|+||++|++.+|+|+.|.++.+++.++|++.+++.+.
T Consensus 245 ~l~~~~~---~~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~ 305 (401)
T TIGR01879 245 EKAKRMG---DPTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISD 305 (401)
T ss_pred HHHHhcC---CCeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8754321 2357899999985 7899999999999999999999999999999999988754
No 59
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.98 E-value=3.8e-30 Score=251.82 Aligned_cols=247 Identities=19% Similarity=0.211 Sum_probs=198.7
Q ss_pred HHHHHHHHHHhccCCCC-------------CcchHHHHHHHHHHHhhCCCc-eEecCCCceEEEEeCCC--CCCEEEEEE
Q 020605 54 FEWMRRIRRRIHENPEL-------------GFEEYETSQLVRSELDSLGIE-YTWPVAKTGIVASVGSG--GEPWFGLRA 117 (324)
Q Consensus 54 ~~~~~~~~~~l~~ips~-------------s~~e~~~~~~l~~~l~~~G~~-~~~~~~~~nvia~~~~~--~~~~i~l~~ 117 (324)
.+++.+.+.+|-+|+.+ |..+.++.+|+.+||+++|++ ++.|..+ |++|++++. +.|+|++.+
T Consensus 180 ~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~g-Nv~~~~~g~~~~~p~v~~gS 258 (591)
T PRK13799 180 GADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVG-NVVGRYKAADDDAKTLITGS 258 (591)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCC-CEEEEcCCCCCCCCeEEEec
Confidence 37888888888888632 224568899999999999998 9987765 699999764 369999999
Q ss_pred ecccCCCCCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHHHH---
Q 020605 118 EMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYYMI--- 188 (324)
Q Consensus 118 H~DtVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~~~--- 188 (324)
|+||||. +|+++|+ .|++++|++++.|++.+.+++++|.|+..++||+. .|++.+.
T Consensus 259 HlDTV~~------------gG~~DG~---~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~ 323 (591)
T PRK13799 259 HYDTVRN------------GGKYDGR---EGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALIGDF 323 (591)
T ss_pred cccccCC------------CCccccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHhCCC
Confidence 9999986 3777775 78999999999999999999999999999999972 3666654
Q ss_pred -----H----ccC---------------c-------CCcceEEEeccCCC-------CCCceEEeecccccceeeEEEEE
Q 020605 189 -----K----EGA---------------V-------DKFQGMFGIHISPV-------LPTGTVGSRPGPLLAGSGRFTAV 230 (324)
Q Consensus 189 -----~----~~~---------------~-------~~~d~~i~~~~~~~-------~~~~~~~~~~g~~~~G~~~~~i~ 230 (324)
+ +|. . .++++.+.+|++++ .+.|.+. .++|..+++|+
T Consensus 324 ~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV~-----g~~G~~~~~It 398 (591)
T PRK13799 324 NMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIVT-----SIAGSARYICE 398 (591)
T ss_pred hHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEEe-----eeccceEEEEE
Confidence 1 121 0 14567888888775 3444443 33789999999
Q ss_pred EEecCCCCCC-CC-CCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEc-CCCCcccCCeEEEEEEEecCChhhHH
Q 020605 231 IKGKGGHAAM-PQ-DTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDA-GQAGNIIPEIVRFGGTFRSLTTEGLL 307 (324)
Q Consensus 231 ~~G~~~Hs~~-p~-~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~g-g~~~n~iP~~a~~~~d~R~~~~~~~~ 307 (324)
++|+++|+|. |. .+.||+..+++++..++++..+. +....+++++.|++ +.+.|+||++|++++|+|.++.++.+
T Consensus 399 v~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~~~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e 476 (591)
T PRK13799 399 FIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--QHASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRD 476 (591)
T ss_pred EEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHH
Confidence 9999999996 53 58999999999999998875432 22345789999986 35899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 020605 308 YLEQRIKEVKLFEVAY 323 (324)
Q Consensus 308 ~~~~~i~~~i~~~a~~ 323 (324)
.+.+.+++.++++++.
T Consensus 477 ~l~~~i~~~i~~ia~~ 492 (591)
T PRK13799 477 AAVADILAEIAAIAAR 492 (591)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887754
No 60
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.98 E-value=3.5e-30 Score=242.41 Aligned_cols=232 Identities=18% Similarity=0.176 Sum_probs=184.3
Q ss_pred CcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC--CCCEEEEEEecccCCCCCCCCCccccccCCceeeccchHH
Q 020605 71 GFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG--GEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVH 148 (324)
Q Consensus 71 s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg~ 148 (324)
|.++.++.+|+++||+++|++++.|..+ |+++++++. +.|+|++.+||||||.+ |+.- ...|
T Consensus 29 s~~~~~a~~~~~~~~~~~Gl~v~~D~~g-N~~~~~~g~~~~~~~i~~gsHlDtv~~g------------G~~d---g~~G 92 (406)
T TIGR03176 29 SPEWLAAQQQFKKRMAESGLETRFDDVG-NLYGRLVGTEFPEETILTGSHIDTVVNG------------GNLD---GQFG 92 (406)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEcCCC-cEEEEecCCCCCCCeEEEeccccCCCCC------------CccC---chhh
Confidence 4567889999999999999999988776 699999765 34899999999999975 2211 1347
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHHHHH------------------------ccC------
Q 020605 149 TTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYYMIK------------------------EGA------ 192 (324)
Q Consensus 149 ~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~~~~------------------------~~~------ 192 (324)
+++.|++++.|++.+.+++++|.++++++||++ .|++.+.- .|+
T Consensus 93 v~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~ 172 (406)
T TIGR03176 93 ALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAP 172 (406)
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccccc
Confidence 999999999999998899999999999999974 36666551 111
Q ss_pred --cCCcceEEEeccCCCCCC---ce-EEeecccccceeeEEEEEEEecCCCCCCCCC--CCCHHHHHHHHHHHHHHhhcc
Q 020605 193 --VDKFQGMFGIHISPVLPT---GT-VGSRPGPLLAGSGRFTAVIKGKGGHAAMPQD--TRDPVLAASFAILTLQHIVSR 264 (324)
Q Consensus 193 --~~~~d~~i~~~~~~~~~~---~~-~~~~~g~~~~G~~~~~i~~~G~~~Hs~~p~~--g~nAi~~l~~~l~~l~~~~~~ 264 (324)
..++++.+.+|.+++.-. +. +... ..++|..+++|+++|+++|+|.|.. +.||+..+++++..+.+...+
T Consensus 173 ~~~~~~~~~~elHieqG~~Le~~g~~igiv--~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~ 250 (406)
T TIGR03176 173 TVRDDIKAFVELHIEQGCVLESEGQSIGVV--NAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE 250 (406)
T ss_pred ccccccceEEEEEECCCcchHHCCCeEEEE--eecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh
Confidence 114567888888654211 11 2222 2347999999999999999997543 489999999999999876432
Q ss_pred cCCCCCCceEEEEEEE-cCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHHhh
Q 020605 265 ETDPLEARVVTVGFID-AGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEVAY 323 (324)
Q Consensus 265 ~~~~~~~~~~~v~~i~-gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a~~ 323 (324)
. ....++|++.|+ +|.+.|+||++|++++|+|.++.++.+++.+.|++.+++++++
T Consensus 251 ~---~~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~ 307 (406)
T TIGR03176 251 I---GDPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADE 307 (406)
T ss_pred c---CCCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234689999999 4789999999999999999999999999999999999988754
No 61
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.97 E-value=1.4e-29 Score=247.94 Aligned_cols=244 Identities=20% Similarity=0.223 Sum_probs=193.5
Q ss_pred HHHHHHHHHhccCCCC-------------CcchHHHHHHHHHHHhhCCC-ceEecCCCceEEEEeCCC-C-CCEEEEEEe
Q 020605 55 EWMRRIRRRIHENPEL-------------GFEEYETSQLVRSELDSLGI-EYTWPVAKTGIVASVGSG-G-EPWFGLRAE 118 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~-------------s~~e~~~~~~l~~~l~~~G~-~~~~~~~~~nvia~~~~~-~-~~~i~l~~H 118 (324)
+++.+.+.+|-+|+.+ |..+.++++|+.+||+++|+ +++.|..+ |+++++++. + .|+|++.+|
T Consensus 181 ~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~G-Nl~~~~~g~~~~~~~v~~gsH 259 (591)
T PRK13590 181 NDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAVG-NVVGRYKGSTPQAKRLLTGSH 259 (591)
T ss_pred HHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCCC-CEEEEecCCCCCCCeEEEecc
Confidence 7788888888888653 23456889999999999999 88877665 699999764 3 489999999
Q ss_pred cccCCCCCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc------ccHHH------
Q 020605 119 MDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY------GGAYY------ 186 (324)
Q Consensus 119 ~DtVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~------~G~~~------ 186 (324)
|||||.+ |+.+| ++|++++|++++.|++.+..++++|.|++++|||++ .|++.
T Consensus 260 lDTV~~g------------G~~DG---~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~~~ 324 (591)
T PRK13590 260 YDTVRNG------------GKYDG---RLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALIGDFD 324 (591)
T ss_pred cccCCCC------------CCccc---HHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHhCCCh
Confidence 9999864 55544 478999999999999999888899999999999973 36664
Q ss_pred --HHH---------------ccC-----------cCCcceEEEeccCCCC-------CCceEEeecccccceeeEEEEEE
Q 020605 187 --MIK---------------EGA-----------VDKFQGMFGIHISPVL-------PTGTVGSRPGPLLAGSGRFTAVI 231 (324)
Q Consensus 187 --~~~---------------~~~-----------~~~~d~~i~~~~~~~~-------~~~~~~~~~g~~~~G~~~~~i~~ 231 (324)
+++ .|+ .+.+.+.+.+|++++. +.+.+.. ++|..+++|++
T Consensus 325 ~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~-----~~G~~~~~v~v 399 (591)
T PRK13590 325 PAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIVTS-----INGSVRYVGEM 399 (591)
T ss_pred HHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEEEee-----eeccEEEEEEE
Confidence 222 111 0135567888877652 2344332 37899999999
Q ss_pred EecCCCCCC-CCC-CCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEc-CCCCcccCCeEEEEEEEecCChhhHHH
Q 020605 232 KGKGGHAAM-PQD-TRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDA-GQAGNIIPEIVRFGGTFRSLTTEGLLY 308 (324)
Q Consensus 232 ~G~~~Hs~~-p~~-g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~g-g~~~n~iP~~a~~~~d~R~~~~~~~~~ 308 (324)
+|+++|+|. |.. +.||+..+++++..+++.... ....+.+++.+++ |.+.|+||++|++++|+|+.+.++.++
T Consensus 400 ~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~----~~~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~ 475 (591)
T PRK13590 400 IGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ----DGDSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDA 475 (591)
T ss_pred EeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc----CCCcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHH
Confidence 999999996 544 789999999999999876432 1234779999884 679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 020605 309 LEQRIKEVKLFEVAY 323 (324)
Q Consensus 309 ~~~~i~~~i~~~a~~ 323 (324)
+.+.|++.+++++++
T Consensus 476 v~~~i~~~i~~ia~~ 490 (591)
T PRK13590 476 MVADVLAELEAICER 490 (591)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 62
>PRK08554 peptidase; Reviewed
Probab=99.97 E-value=5.4e-30 Score=243.17 Aligned_cols=258 Identities=19% Similarity=0.144 Sum_probs=179.2
Q ss_pred HHHHHHHHhccCCCCCcc------hHHHHHHHHHHHhhCCCceEec--CCCceEEEEeCCCCCCEEEEEEecccCCCCC-
Q 020605 56 WMRRIRRRIHENPELGFE------EYETSQLVRSELDSLGIEYTWP--VAKTGIVASVGSGGEPWFGLRAEMDALPLQE- 126 (324)
Q Consensus 56 ~~~~~~~~l~~ips~s~~------e~~~~~~l~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~- 126 (324)
++++++++|++|||+++. +.++++|+.++|+++|++++.. .+++|+++.++.+ +++|+|+||+||||+++
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~~~-~~~l~l~gH~DtVp~~~~ 80 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDGYYAVYGEIGEG-KPKLLFMAHFDVVPVNPE 80 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeCCC-CCEEEEEeccccCCCCcc
Confidence 468889999999997643 5789999999999999998642 2457899998543 48899999999999864
Q ss_pred -CCCCcccc-ccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccC--cCCcce
Q 020605 127 -MVEWEHKS-KNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGA--VDKFQG 198 (324)
Q Consensus 127 -~~~~~~~~-~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~--~~~~d~ 198 (324)
|..+||.. .+||++|||| |||++++++.|++.|++.+ ++++|.|+|++|||.+ .++..+++... ...+|+
T Consensus 81 ~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~--~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~ 158 (438)
T PRK08554 81 EWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKEP--LNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPKY 158 (438)
T ss_pred ccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccCccccHHHHHHHHhcCCCCCE
Confidence 44457875 4589999999 6999999999999998743 6789999999999954 34556554311 125799
Q ss_pred EEEeccCCCCCCceEEeecccc-----------ccee---eEEEEEEEecC-CCCCCCCCCCC--HHHHHHHHHHHHHHh
Q 020605 199 MFGIHISPVLPTGTVGSRPGPL-----------LAGS---GRFTAVIKGKG-GHAAMPQDTRD--PVLAASFAILTLQHI 261 (324)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~g~~-----------~~G~---~~~~i~~~G~~-~Hs~~p~~g~n--Ai~~l~~~l~~l~~~ 261 (324)
+++.|++...+ .+..+.|.. ..|. .++.+++.|.+ +|++.+..|.| |+..+++++.++...
T Consensus 159 ~iv~Ept~~~~--~~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~~ 236 (438)
T PRK08554 159 MINADGIGMKP--IIRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNVL 236 (438)
T ss_pred EEEeCCCCCcc--hhhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCce
Confidence 99877643221 111111110 0122 35555666665 99997665555 588888887776543
Q ss_pred hc----c-cCC--CCCCceEEEEEEEcCC-----------------------------------CCccc---CCeEEEEE
Q 020605 262 VS----R-ETD--PLEARVVTVGFIDAGQ-----------------------------------AGNII---PEIVRFGG 296 (324)
Q Consensus 262 ~~----~-~~~--~~~~~~~~v~~i~gg~-----------------------------------~~n~i---P~~a~~~~ 296 (324)
.. . ... +....++++....+|. ..|++ |++|++++
T Consensus 237 ~~~~~g~~~~~~~~~~~~~~~~~~p~~g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~g~a~~~~ 316 (438)
T PRK08554 237 AVSLEGKFLKGNVVPGEVTLTYLEPGEGEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAEGKHVLKL 316 (438)
T ss_pred EEEEeeeeeecCcccceeEEEEecCCCCccccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecCCeEEEEE
Confidence 21 0 000 1112233333323333 56666 99999999
Q ss_pred EEecCChhhHHHHHHHHHHHHHH
Q 020605 297 TFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 297 d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
|+|+.| .+.+++.++|++.++.
T Consensus 317 DiR~~~-~~~e~v~~~i~~~~~~ 338 (438)
T PRK08554 317 DIRAMS-YSKEDIERTLKEVLEF 338 (438)
T ss_pred EEEecC-CCHHHHHHHHHHHhhc
Confidence 999988 6889999999998864
No 63
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.96 E-value=7e-28 Score=214.28 Aligned_cols=275 Identities=16% Similarity=0.108 Sum_probs=209.1
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhccCCCCCcch------HHHHHHHHHHHhhCCCceEe-c------------CCCceE
Q 020605 41 TRELLDSAREPEFFEWMRRIRRRIHENPELGFEE------YETSQLVRSELDSLGIEYTW-P------------VAKTGI 101 (324)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e------~~~~~~l~~~l~~~G~~~~~-~------------~~~~nv 101 (324)
..++.++++.++ +++++.+++.++|+|+|.+. .++++|+++.|+++|-+++. + +..+.+
T Consensus 4 l~~~fq~id~~~--de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvv 81 (473)
T KOG2276|consen 4 LTKVFQSIDLNK--DEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVV 81 (473)
T ss_pred HHHHHHHhhccH--HHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhh
Confidence 567889999988 99999999999999998754 57899999999999976654 1 123557
Q ss_pred EEEeCCCC-CCEEEEEEecccCCCCCCCCC---cccc-ccCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEE
Q 020605 102 VASVGSGG-EPWFGLRAEMDALPLQEMVEW---EHKS-KNNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLV 173 (324)
Q Consensus 102 ia~~~~~~-~~~i~l~~H~DtVp~~~~~~~---~~~~-~~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~ 173 (324)
+++++..+ +++++++|||||+|++.+++| ||.. ++||++||||+ ||++++.+.+++++++.+..++.||.|+
T Consensus 82 l~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~ 161 (473)
T KOG2276|consen 82 LGVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFV 161 (473)
T ss_pred hhcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEE
Confidence 77777664 589999999999999878888 5553 56899999993 7999999999999999999999999999
Q ss_pred EeccCCCc-ccHHHHHH---ccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEe--cCCCCCC-CCCCCC
Q 020605 174 FQPGEEGY-GGAYYMIK---EGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKG--KGGHAAM-PQDTRD 246 (324)
Q Consensus 174 ~~~dEE~~-~G~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G--~~~Hs~~-p~~g~n 246 (324)
|.+.||.| .|...+++ +.+++++|+++..+ ..+.|.-........+|...|.+.++| +-.|||. ...-.-
T Consensus 162 ~EgmEEsgS~~L~~l~~~~kD~~~~~vD~vciSd---nyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGvfGG~~hE 238 (473)
T KOG2276|consen 162 FEGMEESGSEGLDELIEKEKDKFFKDVDFVCISD---NYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGVFGGVVHE 238 (473)
T ss_pred EEechhccCccHHHHHHHHhhhhhccCCEEEeeC---ceeccCCCcccccccccceeEEEEEeecccccccccccchhHH
Confidence 99999954 56666654 34667899988654 334433111122234699999999999 7789994 333446
Q ss_pred HHHHHHHHHHHHHHhhccc-------------------------------------CCCC-----------CCceEEEEE
Q 020605 247 PVLAASFAILTLQHIVSRE-------------------------------------TDPL-----------EARVVTVGF 278 (324)
Q Consensus 247 Ai~~l~~~l~~l~~~~~~~-------------------------------------~~~~-----------~~~~~~v~~ 278 (324)
|+..|..++..|.+...+- ..+. ..+++.+..
T Consensus 239 ~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLsihg 318 (473)
T KOG2276|consen 239 AMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLSIHG 318 (473)
T ss_pred HHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccceec
Confidence 6666776666664322110 0000 023455555
Q ss_pred EE----cCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHH
Q 020605 279 ID----AGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFE 320 (324)
Q Consensus 279 i~----gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~ 320 (324)
|. +..+..+||.+..-.|.+|++|..+++.+.+.+.+.++..
T Consensus 319 IeGaFs~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~ 364 (473)
T KOG2276|consen 319 IEGAFSGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKV 364 (473)
T ss_pred ccceeeCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHH
Confidence 44 4568899999999999999999999999999999988764
No 64
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.80 E-value=5e-19 Score=136.52 Aligned_cols=104 Identities=21% Similarity=0.217 Sum_probs=95.8
Q ss_pred cceeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhcccC-----CCCCCceEEEEEEEcCCCCcccCCeEEEE
Q 020605 221 LAGSGRFTAVIKGKGGHAAMPQDTRDPVLAASFAILTLQHIVSRET-----DPLEARVVTVGFIDAGQAGNIIPEIVRFG 295 (324)
Q Consensus 221 ~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~l~~~l~~l~~~~~~~~-----~~~~~~~~~v~~i~gg~~~n~iP~~a~~~ 295 (324)
++|..+++|+++|+++|+|.|+.|+||+..+++++.+|+++..+.. ......+++++.++||...|+||++|+++
T Consensus 3 ~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~~~n~ip~~a~~~ 82 (111)
T PF07687_consen 3 HRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGGTAPNVIPDEATLT 82 (111)
T ss_dssp EEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEESSTTEESSEEEEE
T ss_pred CCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccccccccccceeEeecccCCcCCEECCEEEEE
Confidence 4799999999999999999999999999999999999998864432 34567899999999999999999999999
Q ss_pred EEEecCChhhHHHHHHHHHHHHHHHHhhC
Q 020605 296 GTFRSLTTEGLLYLEQRIKEVKLFEVAYQ 324 (324)
Q Consensus 296 ~d~R~~~~~~~~~~~~~i~~~i~~~a~~~ 324 (324)
+++|++|.++.+++.+.|++++++.+++|
T Consensus 83 ~~~R~~p~~~~~~i~~~i~~~~~~~~~~~ 111 (111)
T PF07687_consen 83 VDIRYPPGEDLEEIKAEIEAAVEKIAKKY 111 (111)
T ss_dssp EEEEESTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCcchHHHHHHHHHHHHHHhhhCC
Confidence 99999999999999999999999998875
No 65
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.80 E-value=2e-18 Score=155.69 Aligned_cols=261 Identities=15% Similarity=0.108 Sum_probs=175.5
Q ss_pred HHHHHHHHHhccCCCCCcc--hHHHHHHHHHHHhhCCCceEe-----------cC-CCceEEEEeCCC-CCCEEEEEEec
Q 020605 55 EWMRRIRRRIHENPELGFE--EYETSQLVRSELDSLGIEYTW-----------PV-AKTGIVASVGSG-GEPWFGLRAEM 119 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~--e~~~~~~l~~~l~~~G~~~~~-----------~~-~~~nvia~~~~~-~~~~i~l~~H~ 119 (324)
+++.++.-+|++.||+++. |...+++|...|+++.+--+. ++ ++.||+|-++++ +..+|++.||+
T Consensus 8 e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~~k~tvvl~gH~ 87 (553)
T COG4187 8 ERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGTSKRTVVLHGHF 87 (553)
T ss_pred HHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCCCCceEEEeecc
Confidence 8889999999999999764 677899999999988642111 22 677999999775 45899999999
Q ss_pred ccCCCCCCC---CCccc----------------------cccCCceeecc---chHHHHHHHHHHHHHHhcCCCCCceEE
Q 020605 120 DALPLQEMV---EWEHK----------------------SKNNGKMHGCG---HDVHTTILLGAARLLKHRMDRLKGTVK 171 (324)
Q Consensus 120 DtVp~~~~~---~~~~~----------------------~~~~g~~~grG---~kg~~a~~l~a~~~l~~~~~~~~~~i~ 171 (324)
|||...+-. +.-|+ ...++++.||| ||+|+|+.|++++.+.+. ....+||.
T Consensus 88 DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~-~~~~GNlL 166 (553)
T COG4187 88 DTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR-TDRQGNLL 166 (553)
T ss_pred ceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC-CCCCCcEE
Confidence 999875432 11111 11267999999 599999999999999887 46899999
Q ss_pred EEEeccCC-CcccHHHHHHcc--Cc--CCcce--EEEeccCCCCCCceEE--eecccccceeeEEEEEEEecCCCCCCCC
Q 020605 172 LVFQPGEE-GYGGAYYMIKEG--AV--DKFQG--MFGIHISPVLPTGTVG--SRPGPLLAGSGRFTAVIKGKGGHAAMPQ 242 (324)
Q Consensus 172 ~~~~~dEE-~~~G~~~~~~~~--~~--~~~d~--~i~~~~~~~~~~~~~~--~~~g~~~~G~~~~~i~~~G~~~Hs~~p~ 242 (324)
|+.++||| .+.|++..+..- +. .++++ +|..+.....-.|.-+ ...|+ .|..-.-.-+.|+..|.|.|.
T Consensus 167 f~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGt--iGKLLp~f~vvG~etHvG~~f 244 (553)
T COG4187 167 FMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGT--IGKLLPFFFVVGCETHVGYPF 244 (553)
T ss_pred EEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEecc--chhhcceeEEEeeccccCCcc
Confidence 99999999 456877665421 10 13444 4444432222223222 23333 566777788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh---cccCCCC--CCceEEEEEEEcCCCCcc-cCCeEEEEEEEecCChhhHHHHHHHHHHH
Q 020605 243 DTRDPVLAASFAILTLQHIV---SRETDPL--EARVVTVGFIDAGQAGNI-IPEIVRFGGTFRSLTTEGLLYLEQRIKEV 316 (324)
Q Consensus 243 ~g~nAi~~l~~~l~~l~~~~---~~~~~~~--~~~~~~v~~i~gg~~~n~-iP~~a~~~~d~R~~~~~~~~~~~~~i~~~ 316 (324)
.|+||...+++++.+|+-.. ++..... +++.+..-.+. ...|| .|.++.+.|++=+. ..+.+++.+++++.
T Consensus 245 ~Gvnan~maSei~~~le~N~~l~dr~~Ge~t~PPs~L~qkDlK--e~Y~VqTp~~a~~~fN~l~h-~~ta~~~~d~l~~~ 321 (553)
T COG4187 245 EGVNANFMASEITRRLELNADLADRVDGEITPPPSCLEQKDLK--ESYNVQTPERAWLYFNWLYH-SRTAKELFDRLKEE 321 (553)
T ss_pred cCCCHHHHHHHHHHHhhcChhhhhhhCCeeCCCcHhhhhhhhh--hhccccCcchhhhhheehhh-cCCHHHHHHHHHHH
Confidence 99999999999999986432 2221111 11111111111 12333 47778888887554 45666666666665
Q ss_pred HHHHH
Q 020605 317 KLFEV 321 (324)
Q Consensus 317 i~~~a 321 (324)
.++.+
T Consensus 322 a~~A~ 326 (553)
T COG4187 322 AETAA 326 (553)
T ss_pred HHHHH
Confidence 55543
No 66
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.72 E-value=5.2e-16 Score=140.37 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=102.5
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec-------------------CCCceEEEEeCCCCCCEEEE
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP-------------------VAKTGIVASVGSGGEPWFGL 115 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~-------------------~~~~nvia~~~~~~~~~i~l 115 (324)
+.+..+...+-..++.|..|.++++||+++|+++|++++.. ..++|+++.+++...+.|++
T Consensus 35 ~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill 114 (346)
T PRK10199 35 TQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIII 114 (346)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEE
Confidence 45555556677788888999999999999999999987531 12367999997765589999
Q ss_pred EEecccCCCCCCCCCccccccCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHc
Q 020605 116 RAEMDALPLQEMVEWEHKSKNNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKE 190 (324)
Q Consensus 116 ~~H~DtVp~~~~~~~~~~~~~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~ 190 (324)
.||+|||++.....|++.. +| ++++|. ++|++++|++++.|++.+ ++.+|.|+++++||.+ .|++++++.
T Consensus 115 ~AH~DTV~p~~~~~~~~~~--~g-~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv~~~~EE~Gl~GS~~~~~~ 188 (346)
T PRK10199 115 MAHLDTYAPQSDADVDANL--GG-LTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFVATSGEEEGKLGAENLLKR 188 (346)
T ss_pred EEEcCcCCCCCCCccccCC--CC-cccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEEEECCcccCcHHHHHHHHh
Confidence 9999999754334444432 23 677883 689999999999998653 6789999999999954 799999986
No 67
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.66 E-value=6.5e-16 Score=143.09 Aligned_cols=256 Identities=16% Similarity=0.091 Sum_probs=192.5
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceE-e-------cCCC--c-eEEEEeCCCC--CCEEEEEEeccc
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYT-W-------PVAK--T-GIVASVGSGG--EPWFGLRAEMDA 121 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~-~-------~~~~--~-nvia~~~~~~--~~~i~l~~H~Dt 121 (324)
+++++.+.++++||+.|++|.+++.++.+|++.+|+.++ + .... . -+.+.+++.- -|.+.|.+|+||
T Consensus 5 ~~l~~~F~~~~kI~~~S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~Dt 84 (414)
T COG2195 5 ERLLDRFLELVKIPTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHDT 84 (414)
T ss_pred HHHHHHHHHHeeCCCCCCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeeccccccccccccccccc
Confidence 789999999999999999999999999999999999883 2 1111 1 2445565532 388999999999
Q ss_pred CCCCCC----CCC------------------------cc----cc----ccCC-ceeeccchHHHHHHHHHHHHHHhcC-
Q 020605 122 LPLQEM----VEW------------------------EH----KS----KNNG-KMHGCGHDVHTTILLGAARLLKHRM- 163 (324)
Q Consensus 122 Vp~~~~----~~~------------------------~~----~~----~~~g-~~~grG~kg~~a~~l~a~~~l~~~~- 163 (324)
+|.... ..| |. .. ..|| .+-|.++|+|++.++.++..+++..
T Consensus 85 ~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~~~~~ 164 (414)
T COG2195 85 VPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLREKHP 164 (414)
T ss_pred cccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHhhcCc
Confidence 963110 011 10 00 0123 2345556799999999999999663
Q ss_pred CCCCceEEEEEeccCCCc-ccHHHHHHccCcCCcceEEEeccCCCCCCceEEeecccccceeeEEEEEEEecCCCCCC-C
Q 020605 164 DRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFGIHISPVLPTGTVGSRPGPLLAGSGRFTAVIKGKGGHAAM-P 241 (324)
Q Consensus 164 ~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~g~~~~G~~~~~i~~~G~~~Hs~~-p 241 (324)
..++++|.+.|++|||.+ .|+..+.-..+ .+++.+.++ |.+.|.+.... .+...+++++.|+.+|++. +
T Consensus 165 ~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~f--~a~~ay~iD---Gg~~g~i~~ea----~~~~~~~~~~~g~~~h~~~a~ 235 (414)
T COG2195 165 EIPHGGIRGGFSPDEEIGGRGAANKDVARF--LADFAYTLD---GGPVGEIPREA----FNAAAVRATIVGPNVHPGSAK 235 (414)
T ss_pred cccccCeEEEecchHHhhhhhhhhccHHhh--hcceeEecC---CCccCeeeeec----cchheeeeeeeccCcCccchH
Confidence 457899999999999955 78877765533 467777776 45566655432 3567899999999999984 7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHHHH
Q 020605 242 QDTRDPVLAASFAILTLQHIVSRETDPLEARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLFEV 321 (324)
Q Consensus 242 ~~g~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~a 321 (324)
....||+..+.++...+.... ....++.+.|..+++...|.|.+++.....+|.......+.....+++.+++.+
T Consensus 236 ~~~i~a~~~a~e~~~~~~~~~-----~~e~t~~~~Gv~~~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~~~~~~~~~ 310 (414)
T COG2195 236 GKMINALLLAAEFILELPLEE-----VPELTEGPEGVYHLGDSTNSVEETSLNLAIIRDFDNLLFRARKDSMKDVVEEMA 310 (414)
T ss_pred HHHhhHHHhhhhhhhcCCccc-----ccccccccceEEeccccccchhhhhhhhhhhhhcchhHHHHhHHHHHHHHHHHH
Confidence 789999998888888775332 113567788999999999999999999999999999888888888888888877
Q ss_pred hhC
Q 020605 322 AYQ 324 (324)
Q Consensus 322 ~~~ 324 (324)
+++
T Consensus 311 ~~~ 313 (414)
T COG2195 311 ASL 313 (414)
T ss_pred HHh
Confidence 653
No 68
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.57 E-value=7.1e-14 Score=128.12 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=103.2
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCC-CCCCEEEEEEecccCCC---------
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGS-GGEPWFGLRAEMDALPL--------- 124 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~-~~~~~i~l~~H~DtVp~--------- 124 (324)
+.+++++++|+++||+|+.|.++++++.++|+++|++++.+ ...|+++.+.+ ..+|+|+|.||||+|+.
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~D-~~Gnlia~~~g~~~~~~v~l~aHmDevG~~V~~I~~~G 81 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYELT-RRGAIRATLPGREATPARAVVTHLDTLGAMVRELKDNG 81 (343)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEC-CCeEEEEEECCCCCCCeEEEEEeeccccceeeEECCCC
Confidence 67889999999999999999999999999999999999876 45579998865 34589999999997654
Q ss_pred -------CCC----------------C-------------------------CCc-------------------------
Q 020605 125 -------QEM----------------V-------------------------EWE------------------------- 131 (324)
Q Consensus 125 -------~~~----------------~-------------------------~~~------------------------- 131 (324)
|.+ . .|.
T Consensus 82 ~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~Gd 161 (343)
T TIGR03106 82 RLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVGD 161 (343)
T ss_pred eEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCCC
Confidence 100 0 011
Q ss_pred ---cc----cccCCceeecc--chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCcccH
Q 020605 132 ---HK----SKNNGKMHGCG--HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGA 184 (324)
Q Consensus 132 ---~~----~~~~g~~~grG--~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~ 184 (324)
|. ...+|++|||+ +|+++++++.+++.|++.+.+++.+++++|+++||.|.|+
T Consensus 162 ~v~~~~~~~~~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ga 223 (343)
T TIGR03106 162 FVAFDPQPEFLANGFIVSRHLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGSGA 223 (343)
T ss_pred EEEECCccEEecCCEEEEEecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCccc
Confidence 00 01247899998 5899999999999999877678899999999999966663
No 69
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.53 E-value=2.3e-14 Score=120.81 Aligned_cols=88 Identities=30% Similarity=0.356 Sum_probs=69.8
Q ss_pred EEEEecccCCCCCCCCC---ccc-cccCCceeeccc---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-c-cH
Q 020605 114 GLRAEMDALPLQEMVEW---EHK-SKNNGKMHGCGH---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-G-GA 184 (324)
Q Consensus 114 ~l~~H~DtVp~~~~~~~---~~~-~~~~g~~~grG~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~-G~ 184 (324)
+|++|||||| . .+.| ||. ..++|++||||+ |+++++++.+++.+++.+..++++|.|+|++|||.+ . |+
T Consensus 1 ll~~H~Dtv~-~-~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVP-G-PEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCS-T-GGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccC-C-cCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 6899999999 4 5566 454 356899999994 799999999999999888889999999999999955 4 99
Q ss_pred HHHHHccC--cCCcceEEEec
Q 020605 185 YYMIKEGA--VDKFQGMFGIH 203 (324)
Q Consensus 185 ~~~~~~~~--~~~~d~~i~~~ 203 (324)
+.+++++. ..++|+++..+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~e 99 (189)
T PF01546_consen 79 KHLLEEGAFFGLHPDYVIIGE 99 (189)
T ss_dssp HHHHHHCEEEEEEESEEEECE
T ss_pred hhhhhhccccccccccccccc
Confidence 99999842 12456666533
No 70
>PRK09961 exoaminopeptidase; Provisional
Probab=99.38 E-value=1.8e-11 Score=112.60 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=107.0
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccCCC-----CC-C-----
Q 020605 59 RIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPL-----QE-M----- 127 (324)
Q Consensus 59 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~-----~~-~----- 127 (324)
+++++|+++||+|++|.++++++.++|+++|.+++.+ ...|+++++++..+|+|+|.||||+|+. .+ .
T Consensus 4 ~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~D-~~Gnvi~~~~g~~~~~v~l~aHmDevg~~V~~I~~~G~l~~~ 82 (344)
T PRK09961 4 SLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFD-GLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVL 82 (344)
T ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEEcCCCCCEEEEEeccceeceEEEEECCCceEEEE
Confidence 5699999999999999999999999999999998876 4457999886544589999999998864 11 0
Q ss_pred --CCC-c------------------------------cc---------c-----------------------ccCCceee
Q 020605 128 --VEW-E------------------------------HK---------S-----------------------KNNGKMHG 142 (324)
Q Consensus 128 --~~~-~------------------------------~~---------~-----------------------~~~g~~~g 142 (324)
-+| | +. . ..++++.|
T Consensus 83 ~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~g 162 (344)
T PRK09961 83 PVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMG 162 (344)
T ss_pred eCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEEE
Confidence 011 0 00 0 00234555
Q ss_pred cc--chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCcceEEEeccCC
Q 020605 143 CG--HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFGIHISP 206 (324)
Q Consensus 143 rG--~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~~~~ 206 (324)
+. +..++++++.+++.+++. +++.+++++|+..||.| .|++..... + .+|.+|++|..+
T Consensus 163 kalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i-~pd~~I~vDv~~ 224 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--V-SPDVAIVLDTAC 224 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--c-CCCEEEEEeccC
Confidence 55 247999999999999765 37899999999999955 677777654 2 589999998654
No 71
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.33 E-value=3.2e-11 Score=109.66 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=109.6
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCC-CEEEEEEecccCCC-----CCC-
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGE-PWFGLRAEMDALPL-----QEM- 127 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~-~~i~l~~H~DtVp~-----~~~- 127 (324)
+++++++++|+.+|++|+.|.++.+++++.|++++.+++.|.-+ |+++++++..+ +.+++.+|||++.. .+.
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~D~lG-nlia~~~g~~g~~~imi~AHmDEiG~mV~~I~~~G 80 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEVDRLG-NLIAKKGGKNGPPKVMIAAHMDEIGFMVKEIEDDG 80 (355)
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEEcCCC-cEEEEecCCCCCccEEEEeecceeeeeEEEECCCc
Confidence 57889999999999999999999999999999999999876555 69999987433 56999999996532 000
Q ss_pred -------CCC-c-----------------------------------------cc-------------------------
Q 020605 128 -------VEW-E-----------------------------------------HK------------------------- 133 (324)
Q Consensus 128 -------~~~-~-----------------------------------------~~------------------------- 133 (324)
-+| | +.
T Consensus 81 ~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v 160 (355)
T COG1363 81 FLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFV 160 (355)
T ss_pred eEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEE
Confidence 011 1 00
Q ss_pred -------cccCCceeecc--chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCcceEEEec
Q 020605 134 -------SKNNGKMHGCG--HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFGIH 203 (324)
Q Consensus 134 -------~~~~g~~~grG--~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~ 203 (324)
...++++-++. ++.++++++.+++.| + +..++.+++|+|++.||.| .|++..... + .+|++|.++
T Consensus 161 ~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~--i-~pd~aiavd 235 (355)
T COG1363 161 VFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFR--I-KPDIAIAVD 235 (355)
T ss_pred EEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhccccc--c-CCCEEEEEe
Confidence 00013333433 357999999999999 4 5678999999999999955 677777664 2 589999888
Q ss_pred cCC
Q 020605 204 ISP 206 (324)
Q Consensus 204 ~~~ 206 (324)
..+
T Consensus 236 ~~~ 238 (355)
T COG1363 236 VTP 238 (355)
T ss_pred ccc
Confidence 654
No 72
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.29 E-value=7.9e-11 Score=108.12 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=106.2
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCC--CCCEEEEEEecccCCC-----CC-C---
Q 020605 59 RIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSG--GEPWFGLRAEMDALPL-----QE-M--- 127 (324)
Q Consensus 59 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~~H~DtVp~-----~~-~--- 127 (324)
+++++|+.+|++|+.|.+++++++++|++++.+++.|..+ |+++.++++ .+|+|+|.+|||+|+. .+ .
T Consensus 2 ~~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~D~~G-Nvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~ 80 (350)
T TIGR03107 2 NKIKEVTELQGTSGFEHPIRDYLRQDITPLVDQVETDGLG-GIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFR 80 (350)
T ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEECCCC-CEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEE
Confidence 4689999999999999999999999999999998877666 699988653 3589999999996543 00 0
Q ss_pred ----CCC------------------------------------------cc---------cc------------------
Q 020605 128 ----VEW------------------------------------------EH---------KS------------------ 134 (324)
Q Consensus 128 ----~~~------------------------------------------~~---------~~------------------ 134 (324)
..| ++ ..
T Consensus 81 ~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~ 160 (350)
T TIGR03107 81 VVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQ 160 (350)
T ss_pred EEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 001 00 00
Q ss_pred -----c-cCCceeecc--chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCcceEEEeccC
Q 020605 135 -----K-NNGKMHGCG--HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFGIHIS 205 (324)
Q Consensus 135 -----~-~~g~~~grG--~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~~~ 205 (324)
. .++++.|+. +..++++++.+++.+++. +++.+++++|++.||.| .|++..... . ++|.+|++|..
T Consensus 161 ~~~~~~~~~~~i~~kalDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~-i--~pD~aI~vDv~ 235 (350)
T TIGR03107 161 TETILTANGKNVISKAWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK-F--NPDIFFAVDCS 235 (350)
T ss_pred CCeEEEcCCCEEEEeccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh-C--CCCEEEEEecC
Confidence 0 012344554 347999999999999865 47789999999999955 788876654 2 68999999965
Q ss_pred C
Q 020605 206 P 206 (324)
Q Consensus 206 ~ 206 (324)
+
T Consensus 236 ~ 236 (350)
T TIGR03107 236 P 236 (350)
T ss_pred C
Confidence 5
No 73
>PRK09864 putative peptidase; Provisional
Probab=99.25 E-value=2e-10 Score=105.30 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=103.8
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEecCCCceEEEEeCCCCCCEEEEEEecccCCC-----CCC------
Q 020605 59 RIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWPVAKTGIVASVGSGGEPWFGLRAEMDALPL-----QEM------ 127 (324)
Q Consensus 59 ~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~-----~~~------ 127 (324)
+++++|+.+|++|+.|.++.+++.++|+.++.+++.|..+ |+++.. +..+++|+|.||||+|+. .+.
T Consensus 4 ~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~D~~G-Nli~~~-g~~~~kvml~AHmDevG~mV~~I~~~G~l~~~ 81 (356)
T PRK09864 4 ELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLG-SFVARK-GNKGPKVAVVGHMDEVGFMVTHIDESGFLRFT 81 (356)
T ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEECCCC-CEEEEe-CCCCcEEEEEecccccCEEEEEECCCCeEEEE
Confidence 5689999999999999999999999999999998877666 699886 333479999999996653 000
Q ss_pred --CCCc---------------------------------------------c-----cc---------------------
Q 020605 128 --VEWE---------------------------------------------H-----KS--------------------- 134 (324)
Q Consensus 128 --~~~~---------------------------------------------~-----~~--------------------- 134 (324)
.+|+ | ..
T Consensus 82 ~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~~ 161 (356)
T PRK09864 82 TIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEANF 161 (356)
T ss_pred eCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCCc
Confidence 0111 0 00
Q ss_pred --ccCCceeecc--chHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCcceEEEeccCC
Q 020605 135 --KNNGKMHGCG--HDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFGIHISP 206 (324)
Q Consensus 135 --~~~g~~~grG--~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~~~~ 206 (324)
..++++.|+. +..++++++.+++.+++ ++.+++++|++.||.| .|++..... + ++|.+|++|.++
T Consensus 162 ~~l~~~~i~~kalDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~--i-~PDiaIavDvt~ 231 (356)
T PRK09864 162 ACWGEDKVVGKALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEH--I-KPDVVIVLDTAV 231 (356)
T ss_pred EEEcCCEEEEEeCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhc--C-CCCEEEEEeccc
Confidence 0013444444 24799999999999864 6789999999999955 688877764 2 589999999654
No 74
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.66 E-value=3.6e-07 Score=90.45 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=93.0
Q ss_pred HHHHHHHHHhccC-CCC--Cc-chHHHHHHHHHHHhhCCC-------ceEec-----------------CCCceEEEEeC
Q 020605 55 EWMRRIRRRIHEN-PEL--GF-EEYETSQLVRSELDSLGI-------EYTWP-----------------VAKTGIVASVG 106 (324)
Q Consensus 55 ~~~~~~~~~l~~i-ps~--s~-~e~~~~~~l~~~l~~~G~-------~~~~~-----------------~~~~nvia~~~ 106 (324)
++..+.+.++.++ |.+ |. +|..+.+|+.+.+.+..- +.+.+ ..-.|++.++.
T Consensus 57 ~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~ 136 (834)
T KOG2194|consen 57 ARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKIS 136 (834)
T ss_pred HHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecC
Confidence 4555555666555 444 43 355777788777764421 11111 12468999986
Q ss_pred CC---CCCEEEEEEecccCCCCCCCCCccccccCCceeeccchH-HHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-
Q 020605 107 SG---GEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDV-HTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY- 181 (324)
Q Consensus 107 ~~---~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg-~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~- 181 (324)
++ .+-.|++++|+|+||.+ +|.|+|| ++|++|++++.+.+....+..+|.|+|...||.+
T Consensus 137 ~k~~~~~~~lLlnaHfDSvpt~---------------~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L 201 (834)
T KOG2194|consen 137 PKNGNDKNALLLNAHFDSVPTG---------------PGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGL 201 (834)
T ss_pred CCCCCccceeeeeccccccCCC---------------CCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchh
Confidence 53 23589999999999975 3555665 7888999999999887778999999999999955
Q ss_pred ccHHHHHHcc-CcCCcceEEEec
Q 020605 182 GGAYYMIKEG-AVDKFQGMFGIH 203 (324)
Q Consensus 182 ~G~~~~~~~~-~~~~~d~~i~~~ 203 (324)
.|+..++.+. +...+.+++.+|
T Consensus 202 ~gsH~FItQH~w~~~~ka~INLe 224 (834)
T KOG2194|consen 202 LGSHAFITQHPWSKNIKAVINLE 224 (834)
T ss_pred hhcccceecChhhhhhheEEecc
Confidence 6888888744 334567777766
No 75
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.40 E-value=6.7e-07 Score=74.72 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=58.7
Q ss_pred EEEEEEecccCCCCCCCCCccccccCCceeecc--ch-HHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC-CcccHHHH
Q 020605 112 WFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCG--HD-VHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE-GYGGAYYM 187 (324)
Q Consensus 112 ~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG--~k-g~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~~ 187 (324)
.|++.||+|+++ .... + -++.| ++ .|++++|+.++.|.+.+.+++++|.|+|..+|| +..|++++
T Consensus 2 ~ivi~aH~Ds~~-~~~~---------~-~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~ 70 (179)
T PF04389_consen 2 YIVIGAHYDSVG-GDAD---------G-SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAF 70 (179)
T ss_dssp EEEEEEE--BES-CCC----------T-CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHH
T ss_pred EEEEEeecCCCC-CcCC---------C-cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHH
Confidence 589999999998 2111 1 23444 34 589999999999999777788999999999999 55799999
Q ss_pred HHcc--CcCCcceEEEecc
Q 020605 188 IKEG--AVDKFQGMFGIHI 204 (324)
Q Consensus 188 ~~~~--~~~~~d~~i~~~~ 204 (324)
++.. ..+++.++|.+|.
T Consensus 71 ~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 71 VEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHHHCHHHHEEEEEEECS
T ss_pred HHhhhcccccceeEEeccc
Confidence 9631 2234667777763
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.08 E-value=2.6e-05 Score=70.24 Aligned_cols=64 Identities=27% Similarity=0.292 Sum_probs=49.5
Q ss_pred Cceeeccc--hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc-ccHHHHHHccCcCCcceEEEeccCC
Q 020605 138 GKMHGCGH--DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY-GGAYYMIKEGAVDKFQGMFGIHISP 206 (324)
Q Consensus 138 g~~~grG~--kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~~~~~~d~~i~~~~~~ 206 (324)
+++.|+.. ..++++++.+++.+++.+ ++.+++|+|++.||.| .|+...... + .+|.++++|.++
T Consensus 126 ~~i~gkalDdR~g~~~lle~l~~l~~~~--~~~~v~~v~tvqEEvG~rGA~~aa~~--i-~PD~ai~vD~~~ 192 (292)
T PF05343_consen 126 GRIVGKALDDRAGCAVLLELLRELKEKE--LDVDVYFVFTVQEEVGLRGAKTAAFR--I-KPDIAIAVDVTP 192 (292)
T ss_dssp TEEEETTHHHHHHHHHHHHHHHHHTTSS---SSEEEEEEESSCTTTSHHHHHHHHH--H--CSEEEEEEEEE
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHhhcC--CCceEEEEEEeeeeecCcceeecccc--c-CCCEEEEEeeec
Confidence 45777774 479999999999998864 5699999999999955 688877765 2 589999888543
No 77
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00017 Score=62.77 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccCCCC--CcchHHHHHHHHHHHhhCCCceEecC----------CCceEEEEeCCCCCCEEEEEEecccC
Q 020605 55 EWMRRIRRRIHENPEL--GFEEYETSQLVRSELDSLGIEYTWPV----------AKTGIVASVGSGGEPWFGLRAEMDAL 122 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~--s~~e~~~~~~l~~~l~~~G~~~~~~~----------~~~nvia~~~~~~~~~i~l~~H~DtV 122 (324)
.++.+.++-+. +|.+ |.+-.++.+||.+.|+.+|+.++.+. .-.|+++++.......+++.+|||+-
T Consensus 51 ~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A~r~lVlachydsk 129 (338)
T KOG3946|consen 51 NRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNASRYLVLACHYDSK 129 (338)
T ss_pred HHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCcchheeeecccccc
Confidence 55666655543 3333 34457889999999999999988631 12589999976655889999999987
Q ss_pred CCCCCCCCccccccCCceee-ccchHHHHHHHHHHHHHHhc----CCCCCceEEEEEeccCCCc---------ccHHHHH
Q 020605 123 PLQEMVEWEHKSKNNGKMHG-CGHDVHTTILLGAARLLKHR----MDRLKGTVKLVFQPGEEGY---------GGAYYMI 188 (324)
Q Consensus 123 p~~~~~~~~~~~~~~g~~~g-rG~kg~~a~~l~a~~~l~~~----~~~~~~~i~~~~~~dEE~~---------~G~~~~~ 188 (324)
-... +.+-| .|...++|+++..++++.+. .....-.+.++|.-+||.. =|++++.
T Consensus 130 ~~p~-----------~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA 198 (338)
T KOG3946|consen 130 IFPG-----------GMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLA 198 (338)
T ss_pred cCCC-----------cceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHH
Confidence 3211 22222 23345899999988877543 2234578999999999942 1999998
Q ss_pred Hc
Q 020605 189 KE 190 (324)
Q Consensus 189 ~~ 190 (324)
++
T Consensus 199 ~~ 200 (338)
T KOG3946|consen 199 AK 200 (338)
T ss_pred HH
Confidence 76
No 78
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=97.60 E-value=0.0021 Score=59.28 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=77.3
Q ss_pred HHHHHHHhhCCCceEec---------CCCceEEEEeCCC--------CCCEEEEEEecccCCCCCCCCCccccccCCcee
Q 020605 79 QLVRSELDSLGIEYTWP---------VAKTGIVASVGSG--------GEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMH 141 (324)
Q Consensus 79 ~~l~~~l~~~G~~~~~~---------~~~~nvia~~~~~--------~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~ 141 (324)
+.+.......|+..... ..-+|+.|++..+ .-|+|++.+||||..+.+ +.--
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap-----------~lsv 233 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP-----------GLSV 233 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCC-----------CCCC
Confidence 45566666777776541 2236899998621 239999999999997543 1112
Q ss_pred eccch-HHHHHHHHHHHHHHhc----CCCCCceEEEEEeccCC-CcccHHHHHHc---cCcCCcceEEEec
Q 020605 142 GCGHD-VHTTILLGAARLLKHR----MDRLKGTVKLVFQPGEE-GYGGAYYMIKE---GAVDKFQGMFGIH 203 (324)
Q Consensus 142 grG~k-g~~a~~l~a~~~l~~~----~~~~~~~i~~~~~~dEE-~~~G~~~~~~~---~~~~~~d~~i~~~ 203 (324)
|.+.+ +|+.++|+.++.+.+. ....++|+.|+.+.+-- ...|.+++++- .+-+.+|+++|++
T Consensus 234 gADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLd 304 (555)
T KOG2526|consen 234 GADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLD 304 (555)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhh
Confidence 33333 3688888888877643 23457999999998877 66899999872 1223689999876
No 79
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=96.87 E-value=0.0035 Score=59.87 Aligned_cols=76 Identities=28% Similarity=0.282 Sum_probs=53.7
Q ss_pred CEEEEEEecccCCCCCCCCCccccccCCceeeccch-HHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC-CcccHHHHH
Q 020605 111 PWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHD-VHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE-GYGGAYYMI 188 (324)
Q Consensus 111 ~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~k-g~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE-~~~G~~~~~ 188 (324)
+.+++.+|+|.+|.+ +|.-++ .|++++|++++.|+... ++.+|.|++...|| +..|+.+++
T Consensus 209 ~~~~~~a~~~s~~~~---------------~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~Gl~GS~~~~ 271 (435)
T COG2234 209 SLGLLGAHIDSVPTG---------------PGADDNASGVAALLELARVLKGNP--PKRTVRFVAFGAEESGLLGSEAYV 271 (435)
T ss_pred ceeeecccccCCcCC---------------CCcccccHHHHHHHHHHHHHhcCC--CCceEEEEEecchhhcccccHHHH
Confidence 556666666665542 222234 48999999999999875 88999999999999 557999999
Q ss_pred HccCc---CCcceEEEec
Q 020605 189 KEGAV---DKFQGMFGIH 203 (324)
Q Consensus 189 ~~~~~---~~~d~~i~~~ 203 (324)
..... +....++.++
T Consensus 272 ~~~~~~~~~~~~~viN~D 289 (435)
T COG2234 272 KRLSKDLDKKIALVINLD 289 (435)
T ss_pred hcCCcchhhhhheEEecc
Confidence 87541 1233455544
No 80
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=96.41 E-value=0.012 Score=58.94 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=56.9
Q ss_pred ceEEEEeCCC--CCCEEEEEEecccCCCCCCCCCccccccCCceeeccchHHHHHHHHHHH---HHHhcCCCCCceEEEE
Q 020605 99 TGIVASVGSG--GEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAAR---LLKHRMDRLKGTVKLV 173 (324)
Q Consensus 99 ~nvia~~~~~--~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~---~l~~~~~~~~~~i~~~ 173 (324)
.|++|.++|. +..-|++.+|.|....|.. ....|.+.++...+ .+++.+++|+++|+|+
T Consensus 339 ~NIig~I~Gs~epD~~ViigahrDSw~~Ga~----------------dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~ 402 (702)
T KOG2195|consen 339 QNIIGKIEGSEEPDRYVIIGAHRDSWTFGAI----------------DPNSGTALLLEIARALSKLKKRGWRPRRTILFA 402 (702)
T ss_pred eeEEEEEecCcCCCeEEEEeccccccccCCc----------------CCCccHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 6899999874 5689999999998764311 01334666655554 4456789999999999
Q ss_pred EeccCC-CcccHHHHHHc
Q 020605 174 FQPGEE-GYGGAYYMIKE 190 (324)
Q Consensus 174 ~~~dEE-~~~G~~~~~~~ 190 (324)
...+|| +..|+-.+++.
T Consensus 403 sWdAeEfGliGStE~~E~ 420 (702)
T KOG2195|consen 403 SWDAEEFGLLGSTEWAEE 420 (702)
T ss_pred EccchhccccccHHHHHH
Confidence 999999 55799888875
No 81
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=94.40 E-value=0.18 Score=43.97 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=49.6
Q ss_pred CEEEEEEecccCCCCCCCCCccccccCCceeeccc---hHHHHHHHHHHHHHHhc---CCCCCceEEEEEeccCC-Cccc
Q 020605 111 PWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGH---DVHTTILLGAARLLKHR---MDRLKGTVKLVFQPGEE-GYGG 183 (324)
Q Consensus 111 ~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~---kg~~a~~l~a~~~l~~~---~~~~~~~i~~~~~~dEE-~~~G 183 (324)
|.|++.+.||+...- ++. +.|+ =.|++++|+++++|.+. ...++++|.|.|..+|- +..|
T Consensus 1 ~iIlv~armDs~s~F-----------~~~--s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiG 67 (234)
T PF05450_consen 1 PIILVVARMDSFSFF-----------HDL--SPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIG 67 (234)
T ss_pred CEEEEEecccchhcc-----------cCC--CCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccc
Confidence 678999999988531 122 2343 25899999999999755 23578999999999999 5578
Q ss_pred HHHHHH
Q 020605 184 AYYMIK 189 (324)
Q Consensus 184 ~~~~~~ 189 (324)
++.++.
T Consensus 68 S~R~vy 73 (234)
T PF05450_consen 68 SSRFVY 73 (234)
T ss_pred hHHHHH
Confidence 888864
No 82
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=93.04 E-value=0.41 Score=43.30 Aligned_cols=120 Identities=16% Similarity=0.089 Sum_probs=67.6
Q ss_pred HHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec------CCCceEEEEe-CCCCCCEEEEEEecccCCCCCC---
Q 020605 58 RRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP------VAKTGIVASV-GSGGEPWFGLRAEMDALPLQEM--- 127 (324)
Q Consensus 58 ~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~------~~~~nvia~~-~~~~~~~i~l~~H~DtVp~~~~--- 127 (324)
+.+.|+|+..|..--.....++++++.+++.|++++.. ..+.|.+.-. .++..|+-++.-+|.--+....
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i 80 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPI 80 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccE
Confidence 35678999999887788899999999999999988751 1122222111 1221122222223222220000
Q ss_pred ----CCCcccc-----ccCCceee-ccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC
Q 020605 128 ----VEWEHKS-----KNNGKMHG-CGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE 179 (324)
Q Consensus 128 ----~~~~~~~-----~~~g~~~g-rG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 179 (324)
....|+. +..+.+.+ +.+++|.|+.+++++++.+.+ ++.+|..++...|=
T Consensus 81 ~LVGKGiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~lk--~~vnV~~~l~~~EN 140 (311)
T PF00883_consen 81 ALVGKGITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKLK--LPVNVVAVLPLAEN 140 (311)
T ss_dssp EEEEEEEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHCT---SSEEEEEEEEEEE
T ss_pred EEEcceEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHcC--CCceEEEEEEcccc
Confidence 0111221 11122322 234689999999999999875 66888888877765
No 83
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=92.75 E-value=3.3 Score=39.95 Aligned_cols=124 Identities=13% Similarity=0.053 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec------CCCceEEEEe-CCC-CCCEEEEEEecccCCCC
Q 020605 54 FEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP------VAKTGIVASV-GSG-GEPWFGLRAEMDALPLQ 125 (324)
Q Consensus 54 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~------~~~~nvia~~-~~~-~~~~i~l~~H~DtVp~~ 125 (324)
..+-+.+.|+|+..|..--.....++++++.+++.|++++.- ..+.+.+... .++ ..|.++...+...-+..
T Consensus 153 ~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g~~~~~ 232 (468)
T cd00433 153 IAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGASK 232 (468)
T ss_pred HHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECCCCCCC
Confidence 367888999999999877778889999999999999998862 2233444444 343 34666666554322100
Q ss_pred C-----CCCCcccc----cc-CCceee-ccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC
Q 020605 126 E-----MVEWEHKS----KN-NGKMHG-CGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE 179 (324)
Q Consensus 126 ~-----~~~~~~~~----~~-~g~~~g-rG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 179 (324)
. .....|+. .+ ..-|.+ ..+.+|.|+.+++++++.+.+ ++.+|..++...|=
T Consensus 233 ~~i~LVGKGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN 295 (468)
T cd00433 233 KPIALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAEN 295 (468)
T ss_pred CcEEEEcCceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeec
Confidence 0 01112221 00 011111 112489999999999999875 67888888887776
No 84
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=92.23 E-value=3.7 Score=40.06 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceE-e-c-----CCCce-EEEEeCCCC-CCEEEEEEecccCCC
Q 020605 54 FEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYT-W-P-----VAKTG-IVASVGSGG-EPWFGLRAEMDALPL 124 (324)
Q Consensus 54 ~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~-~-~-----~~~~n-via~~~~~~-~~~i~l~~H~DtVp~ 124 (324)
..+-+.+.|+|+..|+.-......++++.+.+.+.|++++ + + ..+.| +++.=.++. .|.++...| . |.
T Consensus 211 ia~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y-~--g~ 287 (569)
T PTZ00412 211 IGHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEY-I--GN 287 (569)
T ss_pred HHHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEe-C--CC
Confidence 3567788999999998777777889999998888999986 4 1 22333 444434443 355555544 3 21
Q ss_pred CCCCCCccccccCCc--------------eee-ccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC
Q 020605 125 QEMVEWEHKSKNNGK--------------MHG-CGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE 179 (324)
Q Consensus 125 ~~~~~~~~~~~~~g~--------------~~g-rG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 179 (324)
. ....|....-.|. +.. .++.+|.|+.+++++++.+.+ ++.+|..++...|=
T Consensus 288 ~-~~~~~iaLVGKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~Lk--lpvnVv~iiplaEN 354 (569)
T PTZ00412 288 P-RSSAATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQ--LPVNVVAAVGLAEN 354 (569)
T ss_pred C-CCCCcEEEEcCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHcC--CCeEEEEEEEhhhc
Confidence 1 1122321111111 111 112489999999999998875 67888888887776
No 85
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=91.99 E-value=3.7 Score=39.69 Aligned_cols=123 Identities=14% Similarity=0.029 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec------CCCceEEEEe-CCC-CCCEEEEEEecccC--
Q 020605 53 FFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP------VAKTGIVASV-GSG-GEPWFGLRAEMDAL-- 122 (324)
Q Consensus 53 ~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~------~~~~nvia~~-~~~-~~~~i~l~~H~DtV-- 122 (324)
...+-+.+.|+|+..|..--.....++++++.+++.|+++++- ..+.|.+.-. .++ ..|.++...+--.-
T Consensus 169 ~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l~Y~g~~~~ 248 (483)
T PRK00913 169 AIAEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKGGKKP 248 (483)
T ss_pred HHHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEEEECCCCCe
Confidence 3367888999999999877777889999999999999998761 2233444444 344 33555555543110
Q ss_pred --CCCCCCCCcccc----cc-CCceee-ccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC
Q 020605 123 --PLQEMVEWEHKS----KN-NGKMHG-CGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE 179 (324)
Q Consensus 123 --p~~~~~~~~~~~----~~-~g~~~g-rG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 179 (324)
-+| ....|+. .+ .+.+.+ +.+.+|.|+.+++++++.+.+ ++.+|..++...|=
T Consensus 249 i~LVG--KGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lk--l~vnV~~v~~l~EN 309 (483)
T PRK00913 249 IALVG--KGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELK--LPVNVVGVVAACEN 309 (483)
T ss_pred EEEEc--CceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcC--CCceEEEEEEeecc
Confidence 001 1122321 00 111221 123489999999999999875 67899988888777
No 86
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=91.88 E-value=2 Score=41.28 Aligned_cols=123 Identities=16% Similarity=0.100 Sum_probs=79.4
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEec------CCCceEEEEe-CCC-CCCEEEEEEecccCCCCC
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTWP------VAKTGIVASV-GSG-GEPWFGLRAEMDALPLQE 126 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~------~~~~nvia~~-~~~-~~~~i~l~~H~DtVp~~~ 126 (324)
.+-..+.|+|...|..--.....++++.+++...|+.++.. +.+-|.+... +++ ..|.++...|.++-|...
T Consensus 189 ~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~~~~~~ 268 (513)
T KOG2597|consen 189 AAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSGADK 268 (513)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCCCCCcc
Confidence 56667778888777665666788999999999999877651 2233444443 333 347777788777654321
Q ss_pred C-----CCCcccc-----ccCCceee-ccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC
Q 020605 127 M-----VEWEHKS-----KNNGKMHG-CGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE 179 (324)
Q Consensus 127 ~-----~~~~~~~-----~~~g~~~g-rG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 179 (324)
. .+..|+. +..+.+.+ |++.+|.|+.+++++++.+.+ ++-++.+++.-.|-
T Consensus 269 ~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~--~~in~~~v~plcEN 330 (513)
T KOG2597|consen 269 TILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLS--LPINVHAVLPLCEN 330 (513)
T ss_pred eEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcC--CCCceEEEEeeecc
Confidence 1 1112221 01112222 344689999999999998876 55888888887777
No 87
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=91.56 E-value=0.38 Score=46.60 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=39.5
Q ss_pred CCceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 270 EARVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 270 ~~~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
...|+|++.+.++ |++|.+++++|+++.++++++.+.|+++++.
T Consensus 336 ~~~t~n~g~i~~~------~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~~ 379 (477)
T TIGR01893 336 VESSLNLGVVKTK------ENKVIFTFLIRSSVESDKDYVTEKIESIAKL 379 (477)
T ss_pred EEeeeeEEEEEEc------CCEEEEEEEeCCCCchhHHHHHHHHHHHhhh
Confidence 4578999999976 6899999999999999999999999998874
No 88
>PRK05015 aminopeptidase B; Provisional
Probab=91.55 E-value=5.6 Score=37.58 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=72.3
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhC---CCceEec------CCCce-EEEEeCCCCCCEEEEEEecccCCC
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSL---GIEYTWP------VAKTG-IVASVGSGGEPWFGLRAEMDALPL 124 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~---G~~~~~~------~~~~n-via~~~~~~~~~i~l~~H~DtVp~ 124 (324)
-+.+.+.|+|+..|+.--.....++...+++++. ++++++. ..+.+ +++.=+++..|+.++.-+|. |.
T Consensus 100 ~~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~lv~L~Y~--~~ 177 (424)
T PRK05015 100 LKIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVLLALDYN--PT 177 (424)
T ss_pred HHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEEEEEEec--CC
Confidence 5678889999999987666677777777777776 5777651 22333 44443444334444443443 33
Q ss_pred CCCCCCcc--cccc-------CCc-ee-ecc---c---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC
Q 020605 125 QEMVEWEH--KSKN-------NGK-MH-GCG---H---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE 179 (324)
Q Consensus 125 ~~~~~~~~--~~~~-------~g~-~~-grG---~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 179 (324)
++. +.|. ...- +|. |. +.+ | .+|.|+.++++.++.+.+ ++.+|..++...|=
T Consensus 178 g~~-~~~v~~aLVGKGITFDSGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~~--l~~nV~~il~~aEN 246 (424)
T PRK05015 178 GDP-DAPVYACLVGKGITFDSGGYSIKPSAGMDSMKSDMGGAATVTGALALAITRG--LNKRVKLFLCCAEN 246 (424)
T ss_pred CCC-CCCeeEEEecCceEecCCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhcC--CCceEEEEEEeccc
Confidence 221 2222 1111 111 11 111 2 378899999998888765 77899999888887
No 89
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=79.45 E-value=39 Score=32.82 Aligned_cols=117 Identities=18% Similarity=0.100 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCC-CceEec------CCCce-EEEEeCCC-CCCEEEEEEecccCCCC
Q 020605 55 EWMRRIRRRIHENPELGFEEYETSQLVRSELDSLG-IEYTWP------VAKTG-IVASVGSG-GEPWFGLRAEMDALPLQ 125 (324)
Q Consensus 55 ~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G-~~~~~~------~~~~n-via~~~~~-~~~~i~l~~H~DtVp~~ 125 (324)
-+.+.+.|+|++.|..--.....++. ++.|.+.+ ++++.- .-+.| +++.=.++ ..|.++..-+ -+.+
T Consensus 167 ~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y---~g~~ 242 (485)
T COG0260 167 AEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEY---NGKG 242 (485)
T ss_pred HHHHHHHHHHhhCCcccCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEc---CCCC
Confidence 67788999999999877777777777 77777665 777651 12333 44443333 2355543322 2211
Q ss_pred CC--------CCCccccccCCc-ee-ecc---c---hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCC
Q 020605 126 EM--------VEWEHKSKNNGK-MH-GCG---H---DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEE 179 (324)
Q Consensus 126 ~~--------~~~~~~~~~~g~-~~-grG---~---kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 179 (324)
+. ....|+. +|. |. +.| | .||.|+.++++.++.+.+ ++.++..+...-|=
T Consensus 243 ~~~~~iaLVGKGitFDs--GGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~--l~vnv~~vl~~~EN 308 (485)
T COG0260 243 KAKKPIALVGKGITFDS--GGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELK--LPVNVVGVLPAVEN 308 (485)
T ss_pred CCCceEEEEcCceeecC--CCcccCCccchhhhhcccchHHHHHHHHHHHHHcC--CCceEEEEEeeecc
Confidence 10 1112221 111 11 112 3 379999999999999875 77888888877776
No 90
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=75.66 E-value=12 Score=34.59 Aligned_cols=71 Identities=21% Similarity=0.132 Sum_probs=44.0
Q ss_pred ceEEEEeCCCCCCEEEEEEecccCCCCCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccC
Q 020605 99 TGIVASVGSGGEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGE 178 (324)
Q Consensus 99 ~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 178 (324)
.|+|+.-+ +....+++.+|.|+=-.|.. |+. .|++..+.++..|...+ ..+.++..+.|
T Consensus 179 y~~Ia~~~-~en~vv~i~AH~DHW~~G~t---------DN~-------lg~~~AV~~~~~lr~~~----~~~~lv~FtAE 237 (486)
T COG4882 179 YNVIAVDG-GENGVVLIGAHLDHWYTGFT---------DNI-------LGVAQAVETAGRLRGRG----LAAGLVVFTAE 237 (486)
T ss_pred EEEEEecC-CCCCceEEeechhhhhhccc---------chh-------hhHHHHHHHHHHHhhcC----cceeEEEEecc
Confidence 34555432 23468888889888765421 111 35777777777777654 34567777788
Q ss_pred CCcc----------cHHHHHHc
Q 020605 179 EGYG----------GAYYMIKE 190 (324)
Q Consensus 179 E~~~----------G~~~~~~~ 190 (324)
|+++ |++.++++
T Consensus 238 E~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 238 EHGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred ccCCCCCcceeecccchHHHhh
Confidence 8432 88877765
No 91
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=60.48 E-value=41 Score=32.90 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=52.2
Q ss_pred CCceEEEEeCC--CC-CCEEEEEEecccCCCCCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEE
Q 020605 97 AKTGIVASVGS--GG-EPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLV 173 (324)
Q Consensus 97 ~~~nvia~~~~--~~-~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~ 173 (324)
.|.|++|.+.. ++ ...+++..-++... +. ...++++.+++.++.+++.. -+.+||.|+
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~--------------~~----~n~~~v~l~lal~~~~~~~~-~wsKDii~l 62 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSD--------------GE----YNAGGVALALALARYFRRQS-YWSKDIIFL 62 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCC--------------cc----cchhhHHHHHHHHHHhhhch-hhhccEEEE
Confidence 36789999853 22 37888877665432 10 12457889999999999875 478999999
Q ss_pred EeccCCCcccHHHHHHc
Q 020605 174 FQPGEEGYGGAYYMIKE 190 (324)
Q Consensus 174 ~~~dEE~~~G~~~~~~~ 190 (324)
|+.+|. .|.+.++++
T Consensus 63 ~~~~~~--~g~~awl~~ 77 (504)
T PF04114_consen 63 FTDDEL--AGMQAWLEA 77 (504)
T ss_pred ecCCcc--hHHHHHHHH
Confidence 987654 578888875
No 92
>PRK02256 putative aminopeptidase 1; Provisional
Probab=54.37 E-value=25 Score=33.91 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=28.6
Q ss_pred CCceeeccc--hHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc
Q 020605 137 NGKMHGCGH--DVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY 181 (324)
Q Consensus 137 ~g~~~grG~--kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~ 181 (324)
++.+.|.+- ..++.+++.++..+. .++..++++++..||.|
T Consensus 251 ~efI~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVG 293 (462)
T PRK02256 251 RSLIGAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIG 293 (462)
T ss_pred cceeeccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccC
Confidence 456666663 356777777776543 35678999999999955
No 93
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=52.79 E-value=36 Score=33.15 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=34.3
Q ss_pred ceEEEEEEEcCCCCcccCCeEEEEEEEecCChhhHHHHHHHHHHHHHH
Q 020605 272 RVVTVGFIDAGQAGNIIPEIVRFGGTFRSLTTEGLLYLEQRIKEVKLF 319 (324)
Q Consensus 272 ~~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~~~~~~~~~~i~~~i~~ 319 (324)
+++|++.+.- --+.+++.+++|+++..+.+++.++++++.+.
T Consensus 344 ~S~Nlg~v~~------~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~ 385 (485)
T PRK15026 344 TSLNVGVVTM------TDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKL 385 (485)
T ss_pred eeeEEEEEEE------eCCEEEEEEEecCCCchHHHHHHHHHHHHHHH
Confidence 6777777654 33679999999999999999999999887543
No 94
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=45.96 E-value=2.1e+02 Score=25.18 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=54.7
Q ss_pred CCCEEEEEEecccCCCCCCCCCccccccCCceeeccchHHHHHHHHHHHHH--HhcCCCCCceEEEEEeccCC--C----
Q 020605 109 GEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLL--KHRMDRLKGTVKLVFQPGEE--G---- 180 (324)
Q Consensus 109 ~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l--~~~~~~~~~~i~~~~~~dEE--~---- 180 (324)
..|++.+.|-+--+-+.+. -...-.+.||.++++..|++.+ ++.|..+++++.+.---.-- .
T Consensus 30 ~aptlGIiGRLGgigARP~----------~iGlVSDaDGAi~ala~a~KL~~M~~kGd~L~GDVii~ThIcp~Apt~PH~ 99 (276)
T PF06675_consen 30 SAPTLGIIGRLGGIGARPE----------RIGLVSDADGAIAALAAALKLLDMQAKGDVLPGDVIITTHICPDAPTRPHD 99 (276)
T ss_pred CCCeeEEEeeccccccccc----------ceeeeecCchHHHHHHHHHHHHHHHHcCCccCCcEEEEEecCCCCCCCCCC
Confidence 3489999888776654211 0111123477888887777755 46688899999885433222 1
Q ss_pred ---c----ccHHHHHHccCcCCcceEEEeccCC
Q 020605 181 ---Y----GGAYYMIKEGAVDKFQGMFGIHISP 206 (324)
Q Consensus 181 ---~----~G~~~~~~~~~~~~~d~~i~~~~~~ 206 (324)
. -+...+.+.......|+++.+|.+.
T Consensus 100 PvpFM~sPv~~~~~n~~EV~p~mdAILSiDTTK 132 (276)
T PF06675_consen 100 PVPFMGSPVDMATMNRHEVDPEMDAILSIDTTK 132 (276)
T ss_pred CcccccCccCHHHHHHhhcCcccceEEEEecCC
Confidence 0 1555666665555789999988543
No 95
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=42.04 E-value=1.7e+02 Score=22.89 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCcccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhccCCCCCcchHHHHHH
Q 020605 1 MYLMLLARLCLLIIVSTIFTCNPTWAKKETQSGSEQLSSLTRELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQL 80 (324)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~~~~~~ 80 (324)
|+.+++..+++.+|++...-|.++... ..... -...+-.+++.+. -....+++.=+.+.-. +++..+.+-
T Consensus 1 mm~~~l~~l~~~l~~~~L~GCQq~~~~--~~~~~----~p~~~q~eqLA~L---~A~~~YLK~~C~rsdi-Pd~~~I~ra 70 (128)
T TIGR01004 1 MMGNILKCIAFGLCCVSLSGCQQNPAI--HKAAS----VPANEQLEQLASI---VAASRYLKMQCNRSDL-PDDGSILKT 70 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHHccCCCCC--CCCCC----CChHHHHHHHHHH---HHHHHHHHhcCCcccC-CcHHHHHHH
Confidence 666666666665555445555444321 10111 0012222333222 3344445554444333 344556666
Q ss_pred HHHHHhhCCCceE
Q 020605 81 VRSELDSLGIEYT 93 (324)
Q Consensus 81 l~~~l~~~G~~~~ 93 (324)
+....+..|+++.
T Consensus 71 ai~~A~~~gWd~~ 83 (128)
T TIGR01004 71 ANNVAIGKGWDSG 83 (128)
T ss_pred HHHHHHHcCCchh
Confidence 6667777887653
No 96
>PRK06156 hypothetical protein; Provisional
Probab=40.78 E-value=62 Score=31.74 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.4
Q ss_pred ceEEEEEEEcCCCCcccCCeEEEEEE
Q 020605 272 RVVTVGFIDAGQAGNIIPEIVRFGGT 297 (324)
Q Consensus 272 ~~~~v~~i~gg~~~n~iP~~a~~~~d 297 (324)
.+.++..++||...|+||+.|.+.+.
T Consensus 239 ~~~~l~~~~gG~~~n~ip~~a~~~~~ 264 (520)
T PRK06156 239 KGAEIVAMTGGAFANQIPQTAVATLS 264 (520)
T ss_pred CceeEEEEEcCCcCCCCCCccEEEEe
Confidence 35678899999999999999998844
No 97
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=37.36 E-value=32 Score=28.04 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=27.9
Q ss_pred HhccCCCCCcchHHHHHHHHHHHhhCCCceEec
Q 020605 63 RIHENPELGFEEYETSQLVRSELDSLGIEYTWP 95 (324)
Q Consensus 63 ~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~ 95 (324)
.|+-.-+-.|+-.++|++++..|++.|.+|+..
T Consensus 3 ~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~ 35 (175)
T COG4635 3 TLILYSTRDGQTRKIAEYIASHLRESGIQVDIQ 35 (175)
T ss_pred eEEEEecCCCcHHHHHHHHHHHhhhcCCeeeee
Confidence 456666778899999999999999999998763
No 98
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=2.9e+02 Score=27.51 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=57.0
Q ss_pred HHHHHHhhCCCceEecC---------CCceEEEEeCC--CC-CCEEEEEEecccCCCCCCCCCccccccCCceeeccchH
Q 020605 80 LVRSELDSLGIEYTWPV---------AKTGIVASVGS--GG-EPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDV 147 (324)
Q Consensus 80 ~l~~~l~~~G~~~~~~~---------~~~nvia~~~~--~~-~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg 147 (324)
|+...+++.|.+++... .+.|+++.+.+ ++ ...++|. ||-+..+ ++ +.+
T Consensus 93 ~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl~-----vP~~~~~--------~~------~~~ 153 (617)
T KOG3566|consen 93 WAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVLV-----VPYGRSS--------GS------NSA 153 (617)
T ss_pred HHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEEE-----EecccCC--------Cc------chh
Confidence 46666677788876522 26899999854 22 3677775 4422111 01 145
Q ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCcccHHHHHHc
Q 020605 148 HTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKE 190 (324)
Q Consensus 148 ~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~ 190 (324)
+++.+++.++.++... -..+||+++|+-++- .|...++++
T Consensus 154 ~v~l~lsla~~f~r~~-yWsKDII~v~~d~~~--~g~~AwLea 193 (617)
T KOG3566|consen 154 SVALLLSLADYFSRWV-YWSKDIIFVFTDGPA--LGLDAWLEA 193 (617)
T ss_pred HHHHHHHHHHHhcCCe-eecccEEEEEeCCcc--ccHHHHHHH
Confidence 6777777888877654 588999999997744 466666665
No 99
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=30.86 E-value=66 Score=30.61 Aligned_cols=68 Identities=19% Similarity=0.100 Sum_probs=39.3
Q ss_pred CEEEEEEecccCCC-CCCCCCcccc------ccCCcee-eccchH-HHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc
Q 020605 111 PWFGLRAEMDALPL-QEMVEWEHKS------KNNGKMH-GCGHDV-HTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY 181 (324)
Q Consensus 111 ~~i~l~~H~DtVp~-~~~~~~~~~~------~~~g~~~-grG~kg-~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~ 181 (324)
..+.|.||+|.||. +.....++.. .++.++- .+|.|. ++++.++.+.- ...++...++.+||.+
T Consensus 62 ~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~-------~~~P~~~~~t~~~ei~ 134 (414)
T COG2195 62 VPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSP-------EHFPLEVLLTGDEEIT 134 (414)
T ss_pred eeEEeeccccccccccccccccccccccccccCCceeeeccCcchhhhhhHHhhcCc-------ccCCceeeeecceEEe
Confidence 56889999999995 4334444432 2244554 456433 33333222221 3567899999999954
Q ss_pred -ccHH
Q 020605 182 -GGAY 185 (324)
Q Consensus 182 -~G~~ 185 (324)
.|+.
T Consensus 135 ~dGa~ 139 (414)
T COG2195 135 TDGAT 139 (414)
T ss_pred ccCcc
Confidence 4444
No 100
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=29.26 E-value=2.2e+02 Score=27.61 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=33.5
Q ss_pred CcchHHHHHHHHHHHhhCCCce-Ee----c----------CCCceEEEEe-CCCC----CCEEEEEEeccc
Q 020605 71 GFEEYETSQLVRSELDSLGIEY-TW----P----------VAKTGIVASV-GSGG----EPWFGLRAEMDA 121 (324)
Q Consensus 71 s~~e~~~~~~l~~~l~~~G~~~-~~----~----------~~~~nvia~~-~~~~----~~~i~l~~H~Dt 121 (324)
+..+..+.+++++.|++.||.- .. . ..+..++|.. ++.. ..--+..+|.|.
T Consensus 19 s~t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDs 89 (465)
T PTZ00371 19 TGSPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDS 89 (465)
T ss_pred CCCHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEeccC
Confidence 5556889999999999999963 11 1 1123466654 4331 135688999994
No 101
>PRK02813 putative aminopeptidase 2; Provisional
Probab=27.54 E-value=2.3e+02 Score=27.14 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=33.6
Q ss_pred CcchHHHHHHHHHHHhhCCCce-Ee----c----------CCCceEEEEe-CCCC---CCEEEEEEeccc
Q 020605 71 GFEEYETSQLVRSELDSLGIEY-TW----P----------VAKTGIVASV-GSGG---EPWFGLRAEMDA 121 (324)
Q Consensus 71 s~~e~~~~~~l~~~l~~~G~~~-~~----~----------~~~~nvia~~-~~~~---~~~i~l~~H~Dt 121 (324)
+..+..+.+++++.|++.||.- .. . ..+..++|.. +..+ ..--++.+|.|-
T Consensus 18 s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~Ds 87 (428)
T PRK02813 18 SPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDS 87 (428)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccC
Confidence 4456889999999999999963 11 1 1123566655 3332 235688999993
No 102
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=27.09 E-value=2.6e+02 Score=25.18 Aligned_cols=30 Identities=23% Similarity=0.103 Sum_probs=22.0
Q ss_pred eEEEEEEEcCCCCcccCCeEEEEEEEecCCh
Q 020605 273 VVTVGFIDAGQAGNIIPEIVRFGGTFRSLTT 303 (324)
Q Consensus 273 ~~~v~~i~gg~~~n~iP~~a~~~~d~R~~~~ 303 (324)
.+.+..+.=|-+.. +|..|.+.||+|+.|+
T Consensus 161 ~l~v~i~SFGfK~G-iP~dAD~VfDvRfLpN 190 (284)
T PF03668_consen 161 RLTVTIQSFGFKYG-IPPDADLVFDVRFLPN 190 (284)
T ss_pred ceEEEEEEeccccC-CCCCCCEEEEcCcCCC
Confidence 35555555566654 7888999999999876
No 103
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=26.82 E-value=2.7e+02 Score=26.12 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=45.4
Q ss_pred HHHHhhCCCceEec---CCCceEEEEe--CCCCCCEEEEEEecccCCCCCCCCCccccccCCceeeccchHHHHHHHHHH
Q 020605 82 RSELDSLGIEYTWP---VAKTGIVASV--GSGGEPWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAA 156 (324)
Q Consensus 82 ~~~l~~~G~~~~~~---~~~~nvia~~--~~~~~~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~ 156 (324)
.+.|++--++|..+ ..+.--+|++ +|.....|+|.+|+.+=.-.+ +. =+|++.+...+
T Consensus 96 ~~~L~dg~Y~V~IdS~l~~G~L~ygE~~ipG~s~~EillsthiCHPsmAN-----------dn------LSG~~v~~~La 158 (386)
T PF09940_consen 96 LDALPDGEYEVVIDSTLEDGSLTYGEFVIPGESDEEILLSTHICHPSMAN-----------DN------LSGPAVLTFLA 158 (386)
T ss_dssp HHT--SSEEEEEEEEEEES-EEEEEEEEE--SSS-EEEEEEE----S-TT-----------TT------HHHHHHHHHHH
T ss_pred HhhCCCCceEEEEeeeecCCceeEEEEEecCCCCCeEEEEEeccCccccc-----------cc------ccHHHHHHHHH
Confidence 33444433455442 2233344554 565558999999998864322 11 25688888899
Q ss_pred HHHHhcCCCCCceEEEEEeccCCCcccHHHHHHc
Q 020605 157 RLLKHRMDRLKGTVKLVFQPGEEGYGGAYYMIKE 190 (324)
Q Consensus 157 ~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~ 190 (324)
+.|++.. .+.+.+|+|.++= -|+-.++.+
T Consensus 159 ~~L~~~~--~rytYRflf~PeT---IGsI~yLsk 187 (386)
T PF09940_consen 159 KWLKQLP--NRYTYRFLFVPET---IGSITYLSK 187 (386)
T ss_dssp HHHTTS----SSEEEEEEE-TT---HHHHHHHHH
T ss_pred HHHhcCC--cCceEEEEEcccc---HHHHHHHHH
Confidence 9998775 4489999999742 366655543
No 104
>PRK02813 putative aminopeptidase 2; Provisional
Probab=25.07 E-value=96 Score=29.68 Aligned_cols=39 Identities=18% Similarity=-0.108 Sum_probs=25.8
Q ss_pred Cceeeccch--HHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCc
Q 020605 138 GKMHGCGHD--VHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGY 181 (324)
Q Consensus 138 g~~~grG~k--g~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~ 181 (324)
+++.|.+.| .++.+++.++..+.. +..++++++..||.|
T Consensus 226 e~i~s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVG 266 (428)
T PRK02813 226 EFISSGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVG 266 (428)
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccC
Confidence 456666643 456666666655422 578999999999954
No 105
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=22.34 E-value=1.3e+02 Score=21.28 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=25.3
Q ss_pred eEEEEEEEecCChhhHHHHHHHHHHHHHHH
Q 020605 291 IVRFGGTFRSLTTEGLLYLEQRIKEVKLFE 320 (324)
Q Consensus 291 ~a~~~~d~R~~~~~~~~~~~~~i~~~i~~~ 320 (324)
+++++|.+|.+++.+...+.+.|.+.++-.
T Consensus 4 h~~fTVai~v~~g~~y~~L~~~ls~kL~l~ 33 (78)
T cd06411 4 QCAFTVALRAPRGADVSSLRALLSQALPQQ 33 (78)
T ss_pred EEEEEEEEEccCCCCHHHHHHHHHHHhcCC
Confidence 588999999999999999988888776543
No 106
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=21.48 E-value=4.3e+02 Score=21.81 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=30.1
Q ss_pred HHHHhccCcchHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHhhCCCceEe
Q 020605 43 ELLDSAREPEFFEWMRRIRRRIHENPELGFEEYETSQLVRSELDSLGIEYTW 94 (324)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G~~~~~ 94 (324)
....+++... .+++++.. .-.-|.+ +.....+.|..-+.+.|+++++
T Consensus 75 a~~a~v~~~a--~dv~alra-~a~~~t~--s~~~l~~~It~S~~~~gl~~~R 121 (181)
T COG3149 75 ALLAYVQQQA--PDVRALRA-AAPQATP--SPAALQGVITASARQHGLSVER 121 (181)
T ss_pred HHHHHHHhhh--hHHHHHHh-cCCCCCC--CcHHHHHHHHHHHHhcCceEEE
Confidence 4555666555 55555433 2222444 4467788999999999999876
No 107
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=21.40 E-value=6.4e+02 Score=23.13 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=44.3
Q ss_pred CEEEEEEecccCCCCCCCCCccccccCCceeeccchHHHHHHHHHHHHHHhcCCCCCceEEEEEeccCCCcc
Q 020605 111 PWFGLRAEMDALPLQEMVEWEHKSKNNGKMHGCGHDVHTTILLGAARLLKHRMDRLKGTVKLVFQPGEEGYG 182 (324)
Q Consensus 111 ~~i~l~~H~DtVp~~~~~~~~~~~~~~g~~~grG~kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~ 182 (324)
.+|+|.+=-|-|...--..|. ..++.++|--+...+.-.+.+++.+.- --.+|.++..++|+...
T Consensus 110 iPVV~aavtd~v~a~Lv~~~~---~pg~NvTGvsD~~~v~q~i~lik~~~P----nak~Igv~Y~p~E~ns~ 174 (322)
T COG2984 110 IPVVFAAVTDPVGAKLVKSLE---QPGGNVTGVSDLLPVAQQIELIKALLP----NAKSIGVLYNPGEANSV 174 (322)
T ss_pred CCEEEEccCchhhccCCcccc---CCCCceeecCCcchHHHHHHHHHHhCC----CCeeEEEEeCCCCcccH
Confidence 467777666666443222332 225788888777788888888888753 34689999999998653
Done!