Query 020606
Match_columns 323
No_of_seqs 177 out of 1237
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02565 cysteine synthase 100.0 1.9E-69 4.1E-74 495.9 37.6 317 7-323 5-321 (322)
2 PLN02556 cysteine synthase/L-3 100.0 1.5E-68 3.2E-73 496.8 36.1 316 7-322 49-364 (368)
3 PLN00011 cysteine synthase 100.0 2.5E-67 5.5E-72 483.3 39.0 322 1-322 1-322 (323)
4 COG0031 CysK Cysteine synthase 100.0 9E-67 1.9E-71 461.9 34.8 295 9-306 3-299 (300)
5 PLN03013 cysteine synthase 100.0 9.9E-67 2.1E-71 486.7 35.5 311 7-317 113-426 (429)
6 PRK10717 cysteine synthase A; 100.0 1.9E-64 4E-69 466.6 36.8 310 7-318 3-325 (330)
7 TIGR01136 cysKM cysteine synth 100.0 2.3E-64 5E-69 460.1 36.0 297 12-309 2-298 (299)
8 PRK11761 cysM cysteine synthas 100.0 7.3E-64 1.6E-68 454.8 34.5 293 7-310 2-294 (296)
9 TIGR01139 cysK cysteine syntha 100.0 1.6E-63 3.4E-68 454.6 35.8 294 12-308 2-296 (298)
10 PLN02356 phosphateglycerate ki 100.0 2.9E-63 6.4E-68 463.2 35.6 309 8-318 44-410 (423)
11 TIGR01138 cysM cysteine syntha 100.0 8.7E-63 1.9E-67 446.8 35.0 287 11-308 2-288 (290)
12 COG1171 IlvA Threonine dehydra 100.0 1.3E-63 2.7E-68 449.3 27.4 297 3-308 11-320 (347)
13 cd01561 CBS_like CBS_like: Thi 100.0 5.1E-62 1.1E-66 443.3 35.9 289 16-306 1-291 (291)
14 KOG1252 Cystathionine beta-syn 100.0 2.6E-63 5.7E-68 436.9 24.3 315 6-320 41-360 (362)
15 TIGR01137 cysta_beta cystathio 100.0 5.5E-62 1.2E-66 469.3 35.5 310 9-319 3-320 (454)
16 PRK12483 threonine dehydratase 100.0 8.2E-61 1.8E-65 459.8 30.8 302 9-319 29-345 (521)
17 PRK06382 threonine dehydratase 100.0 7.6E-61 1.6E-65 453.0 27.9 308 3-322 11-333 (406)
18 PRK08526 threonine dehydratase 100.0 5.6E-61 1.2E-65 451.4 26.0 308 3-321 6-328 (403)
19 PRK06352 threonine synthase; V 100.0 2.7E-60 5.8E-65 440.9 27.0 293 6-308 17-324 (351)
20 PLN02550 threonine dehydratase 100.0 1.1E-59 2.3E-64 454.3 30.4 289 10-307 102-402 (591)
21 TIGR02079 THD1 threonine dehyd 100.0 9.2E-60 2E-64 445.1 28.1 307 3-320 2-326 (409)
22 PLN02970 serine racemase 100.0 1.8E-59 3.8E-64 432.2 29.1 294 4-307 14-321 (328)
23 PRK06608 threonine dehydratase 100.0 1.4E-59 3E-64 433.5 27.7 308 3-320 9-330 (338)
24 PRK06721 threonine synthase; R 100.0 4.1E-59 8.9E-64 433.4 30.8 300 3-313 14-329 (352)
25 PRK08638 threonine dehydratase 100.0 2.8E-59 6E-64 430.6 29.0 295 3-308 13-320 (333)
26 PRK08198 threonine dehydratase 100.0 1.2E-59 2.6E-64 445.9 27.3 304 3-318 8-326 (404)
27 PRK07048 serine/threonine dehy 100.0 2.9E-59 6.3E-64 430.4 27.7 293 3-307 10-314 (321)
28 PRK08639 threonine dehydratase 100.0 2E-59 4.3E-64 444.9 27.2 307 3-320 11-337 (420)
29 PRK07476 eutB threonine dehydr 100.0 4.8E-59 1E-63 428.8 28.8 300 3-316 5-318 (322)
30 TIGR01124 ilvA_2Cterm threonin 100.0 5.4E-59 1.2E-63 447.6 30.3 291 8-307 8-310 (499)
31 PRK08197 threonine synthase; V 100.0 7.3E-59 1.6E-63 438.2 28.9 290 10-308 72-387 (394)
32 PRK06110 hypothetical protein; 100.0 1E-58 2.3E-63 426.5 29.0 298 3-314 7-316 (322)
33 PRK06815 hypothetical protein; 100.0 1.3E-58 2.7E-63 425.1 27.8 290 3-303 6-308 (317)
34 TIGR02991 ectoine_eutB ectoine 100.0 3.7E-58 8.1E-63 421.3 30.0 290 3-305 5-308 (317)
35 PRK09224 threonine dehydratase 100.0 3E-58 6.6E-63 444.3 30.9 289 9-306 12-312 (504)
36 PRK07409 threonine synthase; V 100.0 3E-58 6.4E-63 428.6 29.7 290 8-308 22-328 (353)
37 cd06448 L-Ser-dehyd Serine deh 100.0 5E-58 1.1E-62 420.3 30.6 285 17-306 1-307 (316)
38 PRK07334 threonine dehydratase 100.0 1E-58 2.2E-63 438.4 26.4 292 3-306 9-310 (403)
39 PRK07591 threonine synthase; V 100.0 4.2E-58 9.2E-63 435.3 29.4 290 10-308 82-397 (421)
40 PRK08813 threonine dehydratase 100.0 6.4E-58 1.4E-62 420.6 29.5 279 3-307 25-314 (349)
41 KOG1250 Threonine/serine dehyd 100.0 2.6E-58 5.7E-63 411.4 25.6 290 7-306 56-357 (457)
42 TIGR01127 ilvA_1Cterm threonin 100.0 1.8E-58 3.9E-63 434.6 25.5 289 18-318 1-304 (380)
43 cd01562 Thr-dehyd Threonine de 100.0 6E-58 1.3E-62 419.4 27.7 289 2-302 2-302 (304)
44 PRK02991 D-serine dehydratase; 100.0 1.6E-57 3.5E-62 429.9 30.3 300 14-318 72-438 (441)
45 cd01563 Thr-synth_1 Threonine 100.0 2.3E-57 5.1E-62 418.8 29.8 286 9-304 14-324 (324)
46 PRK08246 threonine dehydratase 100.0 3.2E-57 7E-62 414.1 30.3 287 3-306 9-307 (310)
47 PRK08329 threonine synthase; V 100.0 7.8E-57 1.7E-61 417.4 31.0 277 11-305 58-347 (347)
48 PRK06260 threonine synthase; V 100.0 1.2E-56 2.6E-61 423.5 29.4 289 9-308 59-374 (397)
49 PLN02569 threonine synthase 100.0 2.1E-56 4.6E-61 426.8 30.5 292 10-308 126-445 (484)
50 cd06447 D-Ser-dehyd D-Serine d 100.0 2.8E-56 6.1E-61 416.7 28.0 268 15-285 50-374 (404)
51 PRK06381 threonine synthase; V 100.0 6.5E-56 1.4E-60 408.1 29.3 279 13-302 11-318 (319)
52 PRK06450 threonine synthase; V 100.0 1.5E-55 3.2E-60 406.0 28.9 266 10-305 51-338 (338)
53 TIGR02035 D_Ser_am_lyase D-ser 100.0 4.4E-55 9.5E-60 411.8 31.8 286 14-302 67-421 (431)
54 KOG1251 Serine racemase [Signa 100.0 3.6E-56 7.8E-61 374.4 21.4 294 2-307 10-315 (323)
55 PRK05638 threonine synthase; V 100.0 7E-55 1.5E-59 416.6 30.3 282 10-305 59-359 (442)
56 PRK08206 diaminopropionate amm 100.0 1.3E-54 2.7E-59 408.6 28.4 299 4-307 29-388 (399)
57 TIGR00260 thrC threonine synth 100.0 3.4E-54 7.3E-59 398.4 27.7 290 4-306 10-328 (328)
58 cd00640 Trp-synth-beta_II Tryp 100.0 5.5E-53 1.2E-57 374.9 31.6 243 18-300 1-244 (244)
59 PRK13028 tryptophan synthase s 100.0 5E-52 1.1E-56 387.9 32.7 291 12-308 56-393 (402)
60 TIGR01415 trpB_rel pyridoxal-p 100.0 1.2E-51 2.7E-56 388.4 33.3 297 7-314 58-416 (419)
61 cd06446 Trp-synth_B Tryptophan 100.0 8.3E-52 1.8E-56 386.3 30.6 285 16-307 33-364 (365)
62 TIGR00263 trpB tryptophan synt 100.0 8.2E-52 1.8E-56 388.1 30.7 291 12-308 44-381 (385)
63 TIGR01747 diampropi_NH3ly diam 100.0 4.5E-52 9.7E-57 387.4 27.6 296 6-307 12-369 (376)
64 KOG1481 Cysteine synthase [Ami 100.0 2E-52 4.3E-57 357.8 22.3 311 9-321 41-379 (391)
65 PRK04346 tryptophan synthase s 100.0 2.4E-51 5.3E-56 382.7 31.0 292 11-308 51-389 (397)
66 PLN02618 tryptophan synthase, 100.0 3.5E-51 7.7E-56 382.1 31.9 296 8-309 56-403 (410)
67 PRK12391 tryptophan synthase s 100.0 5.8E-51 1.3E-55 384.3 32.6 296 11-314 71-425 (427)
68 TIGR03844 cysteate_syn cysteat 100.0 8.4E-52 1.8E-56 387.9 26.2 287 12-307 57-385 (398)
69 TIGR03528 2_3_DAP_am_ly diamin 100.0 4.4E-51 9.6E-56 383.2 26.7 294 8-307 33-388 (396)
70 PRK12390 1-aminocyclopropane-1 100.0 1.8E-51 3.9E-56 380.9 23.7 291 5-302 3-325 (337)
71 TIGR01274 ACC_deam 1-aminocycl 100.0 3.8E-51 8.2E-56 378.6 25.2 291 6-303 3-325 (337)
72 TIGR01275 ACC_deam_rel pyridox 100.0 2.4E-51 5.2E-56 376.6 23.7 282 13-302 3-301 (311)
73 PRK03910 D-cysteine desulfhydr 100.0 3.8E-51 8.3E-56 377.8 23.2 291 6-303 4-320 (331)
74 cd06449 ACCD Aminocyclopropane 100.0 1.4E-50 3E-55 370.7 23.9 277 18-301 1-307 (307)
75 PRK13802 bifunctional indole-3 100.0 2.2E-49 4.8E-54 388.8 32.6 293 11-308 319-669 (695)
76 PF00291 PALP: Pyridoxal-phosp 100.0 1.3E-50 2.9E-55 371.1 20.9 277 11-299 1-306 (306)
77 PRK14045 1-aminocyclopropane-1 100.0 2.6E-49 5.7E-54 365.0 22.6 289 5-302 9-315 (329)
78 PRK13803 bifunctional phosphor 100.0 6.9E-48 1.5E-52 379.2 30.4 291 12-308 265-601 (610)
79 COG0498 ThrC Threonine synthas 100.0 4.1E-45 8.9E-50 339.2 24.7 288 10-307 69-378 (411)
80 COG2515 Acd 1-aminocyclopropan 100.0 5.9E-39 1.3E-43 279.6 19.0 292 4-302 2-313 (323)
81 COG0133 TrpB Tryptophan syntha 100.0 1.5E-35 3.2E-40 258.7 23.5 291 12-308 50-386 (396)
82 PRK09225 threonine synthase; V 100.0 1.4E-33 3.1E-38 267.9 27.1 271 17-308 88-418 (462)
83 cd01560 Thr-synth_2 Threonine 100.0 1.8E-33 4E-38 267.3 26.7 273 18-308 88-422 (460)
84 COG1350 Predicted alternative 100.0 3.2E-32 7E-37 238.3 22.7 298 12-315 72-427 (432)
85 KOG1395 Tryptophan synthase be 100.0 1.4E-30 3.1E-35 229.8 20.6 292 10-307 114-453 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 1.1E-25 2.3E-30 195.8 16.5 268 12-283 73-398 (443)
87 KOG2616 Pyridoxalphosphate-dep 92.9 0.22 4.8E-06 42.6 5.2 60 246-306 149-208 (266)
88 PF03808 Glyco_tran_WecB: Glyc 90.4 2 4.3E-05 35.8 8.5 120 80-207 12-133 (172)
89 PF05368 NmrA: NmrA-like famil 87.2 13 0.00028 32.1 11.8 98 72-179 2-99 (233)
90 cd06533 Glyco_transf_WecG_TagA 83.0 12 0.00025 31.1 9.0 120 80-207 10-131 (171)
91 PRK10669 putative cation:proto 81.2 26 0.00056 35.0 12.3 96 70-207 418-514 (558)
92 TIGR01064 pyruv_kin pyruvate k 81.0 30 0.00065 33.8 12.2 123 83-212 261-407 (473)
93 cd08230 glucose_DH Glucose deh 80.7 13 0.00028 34.4 9.5 53 66-119 171-223 (355)
94 PRK03659 glutathione-regulated 80.0 29 0.00063 35.0 12.2 97 70-208 401-498 (601)
95 PRK03562 glutathione-regulated 78.7 33 0.00071 34.8 12.1 51 70-123 401-451 (621)
96 TIGR03201 dearomat_had 6-hydro 78.3 31 0.00068 31.8 11.2 56 61-120 160-215 (349)
97 TIGR00670 asp_carb_tr aspartat 77.4 14 0.00031 33.7 8.4 45 78-122 162-208 (301)
98 TIGR00696 wecB_tagA_cpsF bacte 77.0 19 0.00041 30.2 8.3 118 81-207 13-132 (177)
99 COG0604 Qor NADPH:quinone redu 76.6 27 0.00059 32.2 10.1 57 62-121 137-193 (326)
100 COG0800 Eda 2-keto-3-deoxy-6-p 76.6 48 0.001 28.6 10.7 92 52-155 27-118 (211)
101 PF01210 NAD_Gly3P_dh_N: NAD-d 75.8 6.4 0.00014 32.1 5.2 40 72-114 2-41 (157)
102 TIGR03366 HpnZ_proposed putati 75.5 24 0.00053 31.4 9.4 52 66-120 119-170 (280)
103 KOG0025 Zn2+-binding dehydroge 75.5 26 0.00056 31.9 9.0 88 33-124 124-218 (354)
104 TIGR02819 fdhA_non_GSH formald 75.1 45 0.00097 31.6 11.5 54 62-118 180-233 (393)
105 PF00070 Pyr_redox: Pyridine n 74.6 24 0.00053 24.8 7.4 49 72-120 2-59 (80)
106 cd08294 leukotriene_B4_DH_like 74.3 45 0.00098 30.1 11.0 57 61-120 137-193 (329)
107 cd01075 NAD_bind_Leu_Phe_Val_D 73.8 43 0.00093 28.5 10.0 49 49-98 6-57 (200)
108 PF00764 Arginosuc_synth: Argi 72.7 56 0.0012 31.0 11.1 126 72-206 1-138 (388)
109 PF00107 ADH_zinc_N: Zinc-bind 72.4 17 0.00037 28.0 6.7 31 174-207 58-88 (130)
110 PRK12823 benD 1,6-dihydroxycyc 70.1 47 0.001 28.9 9.8 54 69-122 9-62 (260)
111 PRK13656 trans-2-enoyl-CoA red 70.1 91 0.002 29.7 11.8 57 40-99 14-73 (398)
112 PF07279 DUF1442: Protein of u 69.6 26 0.00057 30.2 7.5 57 57-116 33-94 (218)
113 KOG0023 Alcohol dehydrogenase, 69.4 40 0.00087 31.1 8.9 61 59-123 174-234 (360)
114 cd08274 MDR9 Medium chain dehy 68.7 53 0.0012 29.9 10.2 56 60-119 170-225 (350)
115 TIGR02825 B4_12hDH leukotriene 68.5 42 0.00091 30.4 9.4 57 61-120 132-188 (325)
116 PF00106 adh_short: short chai 67.8 50 0.0011 26.3 8.8 55 70-124 2-60 (167)
117 PF00107 ADH_zinc_N: Zinc-bind 66.9 32 0.0007 26.3 7.3 41 81-124 3-43 (130)
118 PRK15408 autoinducer 2-binding 66.9 1.1E+02 0.0023 28.3 17.2 146 54-208 71-242 (336)
119 PRK09880 L-idonate 5-dehydroge 65.7 45 0.00097 30.6 9.1 53 65-120 167-219 (343)
120 TIGR02822 adh_fam_2 zinc-bindi 65.6 33 0.00072 31.4 8.1 56 61-120 159-214 (329)
121 PF00185 OTCace: Aspartate/orn 65.2 33 0.00071 28.0 7.1 45 78-122 13-65 (158)
122 PF01041 DegT_DnrJ_EryC1: DegT 65.1 16 0.00034 34.2 5.9 72 46-124 24-95 (363)
123 cd08295 double_bond_reductase_ 65.1 48 0.001 30.3 9.1 55 62-119 146-201 (338)
124 TIGR03451 mycoS_dep_FDH mycoth 65.0 78 0.0017 29.2 10.6 56 61-119 170-225 (358)
125 PF02826 2-Hacid_dh_C: D-isome 65.0 59 0.0013 26.9 8.8 105 70-197 37-143 (178)
126 COG1587 HemD Uroporphyrinogen- 64.6 81 0.0018 27.7 10.1 120 81-210 86-213 (248)
127 PRK12771 putative glutamate sy 64.6 17 0.00038 36.2 6.4 54 67-121 136-207 (564)
128 PRK09424 pntA NAD(P) transhydr 64.0 35 0.00075 33.7 8.1 50 70-122 166-215 (509)
129 COG0078 ArgF Ornithine carbamo 63.6 41 0.00089 30.7 7.9 57 68-124 153-215 (310)
130 PRK08703 short chain dehydroge 63.5 87 0.0019 26.8 10.0 31 69-99 7-37 (239)
131 PRK06348 aspartate aminotransf 63.3 1.3E+02 0.0028 28.1 12.9 51 71-122 91-141 (384)
132 cd08233 butanediol_DH_like (2R 62.9 1.1E+02 0.0024 28.0 11.2 57 61-120 166-222 (351)
133 PF09837 DUF2064: Uncharacteri 62.7 71 0.0015 24.8 9.5 98 84-187 2-100 (122)
134 COG1064 AdhP Zn-dependent alco 62.3 54 0.0012 30.5 8.6 60 59-122 158-217 (339)
135 PRK08340 glucose-1-dehydrogena 62.1 92 0.002 27.1 10.1 29 71-99 3-31 (259)
136 cd08281 liver_ADH_like1 Zinc-d 61.9 93 0.002 28.9 10.6 55 62-119 186-240 (371)
137 cd08289 MDR_yhfp_like Yhfp put 61.7 67 0.0015 28.9 9.4 48 69-119 148-195 (326)
138 cd08256 Zn_ADH2 Alcohol dehydr 61.6 1.3E+02 0.0027 27.6 11.3 56 61-119 168-223 (350)
139 PRK06935 2-deoxy-D-gluconate 3 61.6 74 0.0016 27.6 9.4 56 69-124 16-71 (258)
140 PRK02610 histidinol-phosphate 61.4 68 0.0015 29.9 9.5 53 71-123 93-145 (374)
141 PRK15481 transcriptional regul 61.4 95 0.0021 29.6 10.7 81 71-155 143-226 (431)
142 PRK08628 short chain dehydroge 61.2 77 0.0017 27.5 9.4 56 69-124 8-63 (258)
143 PRK07550 hypothetical protein; 61.2 1.4E+02 0.0031 27.8 13.2 78 44-124 67-144 (386)
144 PRK14030 glutamate dehydrogena 61.0 61 0.0013 31.4 9.0 53 48-100 207-259 (445)
145 PLN03154 putative allyl alcoho 60.9 1.3E+02 0.0028 27.8 11.2 56 62-120 153-209 (348)
146 cd08293 PTGR2 Prostaglandin re 60.8 1.3E+02 0.0029 27.3 11.5 55 63-120 148-206 (345)
147 PRK12743 oxidoreductase; Provi 60.7 58 0.0013 28.3 8.5 56 69-124 3-60 (256)
148 PRK12481 2-deoxy-D-gluconate 3 60.7 79 0.0017 27.5 9.3 54 69-123 9-62 (251)
149 PF13561 adh_short_C2: Enoyl-( 60.4 35 0.00075 29.5 6.9 49 76-124 4-54 (241)
150 cd00401 AdoHcyase S-adenosyl-L 60.3 42 0.00092 32.2 7.9 53 63-119 197-249 (413)
151 PRK10309 galactitol-1-phosphat 60.2 58 0.0013 29.8 8.8 56 61-119 154-209 (347)
152 PRK08226 short chain dehydroge 59.7 73 0.0016 27.7 9.0 56 69-124 7-62 (263)
153 PRK05396 tdh L-threonine 3-deh 59.3 66 0.0014 29.4 8.9 50 67-119 163-212 (341)
154 PRK12779 putative bifunctional 59.0 82 0.0018 33.8 10.4 32 70-101 307-338 (944)
155 KOG0024 Sorbitol dehydrogenase 58.9 53 0.0012 30.3 7.8 62 58-122 160-221 (354)
156 PRK08993 2-deoxy-D-gluconate 3 58.5 1.2E+02 0.0025 26.3 10.1 55 69-124 11-65 (253)
157 PRK08589 short chain dehydroge 58.3 72 0.0016 28.1 8.7 55 69-123 7-61 (272)
158 PRK09147 succinyldiaminopimela 58.2 1.6E+02 0.0035 27.5 13.4 79 43-123 64-146 (396)
159 cd08239 THR_DH_like L-threonin 58.2 75 0.0016 28.9 9.1 57 61-120 157-213 (339)
160 TIGR01832 kduD 2-deoxy-D-gluco 57.8 1.1E+02 0.0023 26.3 9.6 55 69-124 6-60 (248)
161 PRK07109 short chain dehydroge 57.4 72 0.0016 29.4 8.8 56 69-124 9-65 (334)
162 PF04127 DFP: DNA / pantothena 57.0 93 0.002 26.2 8.6 59 73-140 24-82 (185)
163 cd08296 CAD_like Cinnamyl alco 56.9 1.3E+02 0.0029 27.2 10.5 51 64-118 160-210 (333)
164 PRK13394 3-hydroxybutyrate deh 56.7 1E+02 0.0022 26.6 9.4 56 69-124 8-64 (262)
165 COG1063 Tdh Threonine dehydrog 56.4 1.7E+02 0.0037 27.2 14.7 51 71-123 171-222 (350)
166 COG0159 TrpA Tryptophan syntha 56.4 84 0.0018 28.1 8.5 61 50-115 109-170 (265)
167 cd08242 MDR_like Medium chain 56.3 1E+02 0.0022 27.7 9.5 56 61-120 149-204 (319)
168 PRK05854 short chain dehydroge 55.9 1.2E+02 0.0025 27.6 9.9 33 69-101 15-47 (313)
169 cd08292 ETR_like_2 2-enoyl thi 55.8 1.2E+02 0.0027 27.0 10.1 52 63-117 135-186 (324)
170 PRK05826 pyruvate kinase; Prov 55.8 1.6E+02 0.0034 28.9 10.9 124 83-212 263-407 (465)
171 cd08288 MDR_yhdh Yhdh putative 55.5 1E+02 0.0022 27.7 9.4 50 68-120 147-196 (324)
172 PRK06182 short chain dehydroge 55.4 1.4E+02 0.0031 26.1 10.8 53 69-124 4-56 (273)
173 cd06324 PBP1_ABC_sugar_binding 55.1 1.6E+02 0.0034 26.4 17.7 43 163-208 192-238 (305)
174 cd08246 crotonyl_coA_red croto 55.0 56 0.0012 30.7 7.8 54 64-120 190-243 (393)
175 PRK06114 short chain dehydroge 54.7 1.4E+02 0.0031 25.8 10.1 56 69-124 9-66 (254)
176 PF01262 AlaDh_PNT_C: Alanine 54.5 58 0.0013 26.7 7.0 50 71-123 22-71 (168)
177 PLN02740 Alcohol dehydrogenase 54.5 79 0.0017 29.6 8.7 55 62-119 193-247 (381)
178 PRK05993 short chain dehydroge 54.2 1.5E+02 0.0034 26.0 11.0 53 69-124 5-57 (277)
179 PRK06139 short chain dehydroge 53.9 77 0.0017 29.2 8.4 55 69-123 8-63 (330)
180 TIGR01751 crot-CoA-red crotony 53.8 61 0.0013 30.5 7.9 55 64-121 186-240 (398)
181 PTZ00079 NADP-specific glutama 53.8 97 0.0021 30.1 9.1 52 49-100 217-268 (454)
182 COG2130 Putative NADP-dependen 53.7 1.1E+02 0.0024 28.1 8.8 58 60-120 143-201 (340)
183 PRK03692 putative UDP-N-acetyl 53.7 90 0.0019 27.6 8.3 97 81-186 69-169 (243)
184 TIGR01316 gltA glutamate synth 53.6 62 0.0013 31.3 8.0 51 71-121 274-329 (449)
185 TIGR02818 adh_III_F_hyde S-(hy 53.6 1.1E+02 0.0023 28.5 9.4 56 62-120 180-235 (368)
186 cd08300 alcohol_DH_class_III c 53.5 85 0.0018 29.2 8.7 56 62-120 181-236 (368)
187 cd08297 CAD3 Cinnamyl alcohol 53.3 1.1E+02 0.0023 27.9 9.3 52 64-118 162-213 (341)
188 PF03853 YjeF_N: YjeF-related 53.2 1.3E+02 0.0028 24.8 9.2 31 69-99 26-59 (169)
189 PRK07062 short chain dehydroge 52.4 1.6E+02 0.0034 25.6 10.4 33 69-101 9-41 (265)
190 cd08231 MDR_TM0436_like Hypoth 52.3 1.9E+02 0.0041 26.5 11.5 52 63-118 173-225 (361)
191 cd08287 FDH_like_ADH3 formalde 52.2 1.8E+02 0.004 26.3 11.1 52 63-117 164-215 (345)
192 PF08659 KR: KR domain; Inter 51.9 98 0.0021 25.6 8.0 55 70-124 2-61 (181)
193 PRK07097 gluconate 5-dehydroge 51.8 1.1E+02 0.0024 26.6 8.9 56 69-124 11-67 (265)
194 PRK07832 short chain dehydroge 51.7 1.1E+02 0.0024 26.9 8.8 30 70-99 2-31 (272)
195 PRK08306 dipicolinate synthase 51.4 1.6E+02 0.0034 26.8 9.8 44 72-118 155-198 (296)
196 PRK12937 short chain dehydroge 51.2 1.5E+02 0.0033 25.1 9.6 56 69-124 6-63 (245)
197 cd01011 nicotinamidase Nicotin 51.2 1.2E+02 0.0027 25.4 8.6 59 57-119 131-196 (196)
198 PRK05557 fabG 3-ketoacyl-(acyl 51.1 1.5E+02 0.0033 25.1 9.5 56 69-124 6-63 (248)
199 cd08291 ETR_like_1 2-enoyl thi 51.0 1.2E+02 0.0026 27.4 9.2 43 75-120 151-193 (324)
200 cd08277 liver_alcohol_DH_like 51.0 1.1E+02 0.0024 28.3 9.1 56 61-119 178-233 (365)
201 PRK05786 fabG 3-ketoacyl-(acyl 50.8 1.2E+02 0.0026 25.8 8.7 33 69-101 6-38 (238)
202 COG2518 Pcm Protein-L-isoaspar 50.8 1.3E+02 0.0028 25.9 8.5 109 54-184 59-171 (209)
203 TIGR03801 asp_4_decarbox aspar 50.8 2.6E+02 0.0057 27.7 12.5 82 42-123 126-215 (521)
204 TIGR00692 tdh L-threonine 3-de 50.8 1.3E+02 0.0028 27.4 9.4 50 65-117 159-208 (340)
205 PRK05447 1-deoxy-D-xylulose 5- 50.7 2.3E+02 0.0049 27.0 11.6 126 71-214 4-154 (385)
206 cd08285 NADP_ADH NADP(H)-depen 50.6 1.7E+02 0.0038 26.7 10.3 54 61-117 160-213 (351)
207 cd08284 FDH_like_2 Glutathione 50.5 1.3E+02 0.0028 27.3 9.4 52 64-118 164-215 (344)
208 PRK08277 D-mannonate oxidoredu 50.5 1.3E+02 0.0028 26.4 9.1 56 69-124 11-67 (278)
209 TIGR03538 DapC_gpp succinyldia 50.1 2.2E+02 0.0048 26.6 13.5 79 43-123 63-145 (393)
210 PRK07523 gluconate 5-dehydroge 50.1 1.3E+02 0.0028 26.0 8.9 56 69-124 11-67 (255)
211 cd08301 alcohol_DH_plants Plan 50.1 1.3E+02 0.0028 27.9 9.3 55 63-120 183-237 (369)
212 PLN02918 pyridoxine (pyridoxam 50.0 1.3E+02 0.0028 30.0 9.4 49 70-118 137-192 (544)
213 COG1751 Uncharacterized conser 49.9 1.4E+02 0.0031 24.4 8.7 74 43-121 7-89 (186)
214 PRK07792 fabG 3-ketoacyl-(acyl 49.9 1.4E+02 0.003 27.0 9.3 56 69-124 13-70 (306)
215 PRK08261 fabG 3-ketoacyl-(acyl 49.6 1.9E+02 0.0042 27.7 10.7 56 69-124 211-266 (450)
216 TIGR00561 pntA NAD(P) transhyd 49.5 73 0.0016 31.5 7.7 51 70-123 165-215 (511)
217 PRK08862 short chain dehydroge 49.5 1.4E+02 0.003 25.7 8.9 54 69-122 6-60 (227)
218 PRK06172 short chain dehydroge 49.4 1.3E+02 0.0029 25.8 8.9 56 69-124 8-64 (253)
219 PRK11706 TDP-4-oxo-6-deoxy-D-g 49.3 60 0.0013 30.4 7.0 54 71-124 48-101 (375)
220 PRK10537 voltage-gated potassi 49.3 2.4E+02 0.0052 26.8 11.5 96 69-208 240-336 (393)
221 PRK05957 aspartate aminotransf 49.2 1.2E+02 0.0026 28.4 9.1 53 71-124 91-143 (389)
222 PTZ00354 alcohol dehydrogenase 49.1 1.5E+02 0.0033 26.5 9.6 55 63-120 136-190 (334)
223 PRK06128 oxidoreductase; Provi 49.0 1.9E+02 0.0042 25.8 10.1 56 69-124 56-114 (300)
224 PRK06197 short chain dehydroge 49.0 2E+02 0.0043 25.8 10.4 33 69-101 17-49 (306)
225 PRK11891 aspartate carbamoyltr 49.0 99 0.0022 29.8 8.3 45 78-122 253-300 (429)
226 PRK12828 short chain dehydroge 48.7 1.6E+02 0.0036 24.7 9.6 56 69-124 8-64 (239)
227 PRK08063 enoyl-(acyl carrier p 48.6 1.7E+02 0.0037 25.0 9.7 56 69-124 5-62 (250)
228 PRK08278 short chain dehydroge 48.5 1.9E+02 0.0041 25.4 9.8 56 69-124 7-70 (273)
229 PRK04870 histidinol-phosphate 48.4 1.5E+02 0.0032 27.3 9.5 83 72-155 84-167 (356)
230 PF02887 PK_C: Pyruvate kinase 48.2 57 0.0012 24.9 5.6 43 164-212 8-50 (117)
231 PRK08643 acetoin reductase; Va 47.9 1.7E+02 0.0037 25.2 9.4 56 69-124 3-59 (256)
232 cd08258 Zn_ADH4 Alcohol dehydr 47.8 75 0.0016 28.6 7.2 53 63-117 160-212 (306)
233 PRK07478 short chain dehydroge 47.8 1.5E+02 0.0033 25.5 9.0 56 69-124 7-63 (254)
234 PRK10490 sensor protein KdpD; 47.7 3.1E+02 0.0066 29.3 12.6 107 70-183 252-375 (895)
235 PRK07324 transaminase; Validat 47.5 1.5E+02 0.0033 27.6 9.4 51 72-123 83-133 (373)
236 PRK09257 aromatic amino acid a 47.4 2.5E+02 0.0053 26.4 11.9 79 42-123 67-149 (396)
237 PRK08303 short chain dehydroge 47.1 1.7E+02 0.0037 26.5 9.4 72 69-140 9-92 (305)
238 cd05211 NAD_bind_Glu_Leu_Phe_V 47.0 1.1E+02 0.0024 26.4 7.7 52 50-101 4-55 (217)
239 PLN00175 aminotransferase fami 46.8 2.6E+02 0.0057 26.5 13.1 51 72-123 118-168 (413)
240 cd08243 quinone_oxidoreductase 46.8 1.8E+02 0.004 25.7 9.6 53 64-119 139-191 (320)
241 PRK08068 transaminase; Reviewe 46.6 2.5E+02 0.0054 26.2 12.6 78 44-124 70-148 (389)
242 PRK14807 histidinol-phosphate 46.2 1.6E+02 0.0034 27.2 9.2 53 71-124 78-130 (351)
243 PRK00779 ornithine carbamoyltr 46.1 1.2E+02 0.0025 27.8 8.1 45 77-121 161-208 (304)
244 COG0836 {ManC} Mannose-1-phosp 45.8 86 0.0019 28.9 7.0 55 71-141 80-138 (333)
245 PRK08217 fabG 3-ketoacyl-(acyl 45.8 1.7E+02 0.0036 25.0 9.0 56 69-124 6-62 (253)
246 PRK12831 putative oxidoreducta 45.7 98 0.0021 30.1 8.0 51 71-121 283-338 (464)
247 PLN02623 pyruvate kinase 45.7 2.7E+02 0.0058 28.1 10.9 123 82-212 366-510 (581)
248 PRK12935 acetoacetyl-CoA reduc 45.5 1.7E+02 0.0038 24.9 9.0 56 69-124 7-64 (247)
249 PF12000 Glyco_trans_4_3: Gkyc 45.3 39 0.00085 28.1 4.4 41 161-207 54-94 (171)
250 PLN03050 pyridoxine (pyridoxam 45.3 87 0.0019 27.7 6.9 33 70-102 62-97 (246)
251 PF13460 NAD_binding_10: NADH( 45.3 57 0.0012 26.6 5.6 47 72-123 2-48 (183)
252 cd05313 NAD_bind_2_Glu_DH NAD( 45.2 1.2E+02 0.0027 26.9 7.8 52 49-100 18-69 (254)
253 PLN02342 ornithine carbamoyltr 45.0 1.2E+02 0.0026 28.4 8.0 45 77-121 203-250 (348)
254 PRK12826 3-ketoacyl-(acyl-carr 44.9 1.7E+02 0.0036 24.9 8.8 56 69-124 7-63 (251)
255 PRK05876 short chain dehydroge 44.8 1.9E+02 0.004 25.6 9.2 56 69-124 7-63 (275)
256 PRK09134 short chain dehydroge 44.7 2.1E+02 0.0045 24.7 9.7 55 69-123 10-66 (258)
257 PRK07666 fabG 3-ketoacyl-(acyl 44.6 2E+02 0.0043 24.5 9.2 56 69-124 8-64 (239)
258 cd08245 CAD Cinnamyl alcohol d 44.3 1.9E+02 0.0041 26.0 9.4 54 63-120 158-211 (330)
259 TIGR00936 ahcY adenosylhomocys 44.3 74 0.0016 30.5 6.7 50 66-119 193-242 (406)
260 TIGR02853 spore_dpaA dipicolin 44.1 2.5E+02 0.0053 25.4 10.6 44 71-117 153-196 (287)
261 cd08298 CAD2 Cinnamyl alcohol 44.0 1.6E+02 0.0034 26.5 8.8 53 61-117 161-213 (329)
262 PRK08192 aspartate carbamoyltr 44.0 1.3E+02 0.0028 28.0 8.1 45 78-122 171-218 (338)
263 cd08282 PFDH_like Pseudomonas 44.0 1.7E+02 0.0037 27.2 9.2 52 63-117 172-223 (375)
264 cd08267 MDR1 Medium chain dehy 43.9 1.7E+02 0.0037 25.9 9.0 50 64-117 140-189 (319)
265 PRK12938 acetyacetyl-CoA reduc 43.9 2E+02 0.0044 24.5 9.6 55 69-123 4-60 (246)
266 PF02254 TrkA_N: TrkA-N domain 43.8 1.3E+02 0.0029 22.3 8.0 45 73-120 2-46 (116)
267 PLN02702 L-idonate 5-dehydroge 43.7 1.5E+02 0.0033 27.3 8.8 56 62-120 176-231 (364)
268 KOG2862 Alanine-glyoxylate ami 43.7 2.7E+02 0.0059 25.8 11.0 86 70-156 69-157 (385)
269 PF00391 PEP-utilizers: PEP-ut 43.6 30 0.00065 24.6 3.1 31 70-101 32-62 (80)
270 cd05281 TDH Threonine dehydrog 43.6 1.5E+02 0.0034 26.9 8.7 49 66-117 162-210 (341)
271 cd05280 MDR_yhdh_yhfp Yhdh and 43.5 2.1E+02 0.0045 25.5 9.5 47 70-119 149-195 (325)
272 PRK12939 short chain dehydroge 43.5 1.9E+02 0.0041 24.6 8.9 56 69-124 8-64 (250)
273 PRK05866 short chain dehydroge 43.2 1.7E+02 0.0037 26.2 8.8 56 69-124 41-97 (293)
274 PRK06181 short chain dehydroge 43.1 1.8E+02 0.004 25.1 8.8 55 70-124 3-58 (263)
275 PRK07035 short chain dehydroge 42.9 2E+02 0.0044 24.6 9.0 54 69-122 9-63 (252)
276 PF13380 CoA_binding_2: CoA bi 42.9 98 0.0021 23.7 6.1 50 70-119 57-106 (116)
277 PRK06124 gluconate 5-dehydroge 42.8 1.9E+02 0.0042 24.8 8.9 54 69-122 12-66 (256)
278 PRK06949 short chain dehydroge 42.6 1.7E+02 0.0036 25.2 8.4 33 69-101 10-42 (258)
279 COG1167 ARO8 Transcriptional r 42.5 3.3E+02 0.0071 26.4 11.7 91 61-156 148-242 (459)
280 PLN02527 aspartate carbamoyltr 42.4 89 0.0019 28.6 6.7 43 79-121 164-209 (306)
281 TIGR00658 orni_carb_tr ornithi 42.2 1.5E+02 0.0033 27.0 8.3 25 78-102 158-182 (304)
282 PRK08912 hypothetical protein; 42.1 2.9E+02 0.0063 25.7 13.8 78 43-123 62-140 (387)
283 cd05282 ETR_like 2-enoyl thioe 42.1 2.2E+02 0.0048 25.3 9.5 51 63-116 134-184 (323)
284 PRK07366 succinyldiaminopimela 41.9 2.9E+02 0.0064 25.7 12.6 111 43-156 67-180 (388)
285 cd08259 Zn_ADH5 Alcohol dehydr 41.7 2.4E+02 0.0051 25.2 9.6 52 63-117 158-209 (332)
286 PRK05166 histidinol-phosphate 41.7 1.8E+02 0.004 27.0 9.0 52 72-124 91-142 (371)
287 KOG1201 Hydroxysteroid 17-beta 41.6 2.8E+02 0.006 25.4 10.6 72 68-141 38-112 (300)
288 PRK07791 short chain dehydroge 41.6 2.3E+02 0.0051 25.1 9.4 72 69-140 7-89 (286)
289 PRK10754 quinone oxidoreductas 41.6 2.6E+02 0.0057 25.0 11.2 53 62-117 135-187 (327)
290 cd08278 benzyl_alcohol_DH Benz 41.6 2.2E+02 0.0048 26.3 9.6 54 63-119 182-235 (365)
291 PRK09275 aspartate aminotransf 41.5 3.7E+02 0.008 26.8 12.2 114 42-155 132-255 (527)
292 TIGR02379 ECA_wecE TDP-4-keto- 41.4 86 0.0019 29.5 6.7 54 71-124 48-101 (376)
293 COG0075 Serine-pyruvate aminot 41.3 2.5E+02 0.0053 26.7 9.5 30 72-101 83-112 (383)
294 PRK12744 short chain dehydroge 41.3 2E+02 0.0043 24.9 8.7 56 69-124 9-69 (257)
295 PRK06701 short chain dehydroge 41.2 2.6E+02 0.0056 24.9 10.0 56 69-124 47-104 (290)
296 PRK13376 pyrB bifunctional asp 41.2 1.4E+02 0.0029 29.7 8.1 46 78-123 186-234 (525)
297 PRK12745 3-ketoacyl-(acyl-carr 41.2 2.3E+02 0.005 24.3 9.4 55 70-124 4-60 (256)
298 PRK12809 putative oxidoreducta 41.1 1.6E+02 0.0035 30.0 9.0 52 70-121 311-380 (639)
299 PRK06194 hypothetical protein; 41.1 2.5E+02 0.0054 24.7 9.7 56 69-124 7-63 (287)
300 PRK07392 threonine-phosphate d 41.1 2E+02 0.0043 26.5 9.1 52 71-124 76-127 (360)
301 PLN02827 Alcohol dehydrogenase 41.0 2.2E+02 0.0049 26.5 9.5 54 63-119 189-242 (378)
302 PF13478 XdhC_C: XdhC Rossmann 41.0 43 0.00093 26.7 3.9 31 72-102 1-31 (136)
303 PRK06836 aspartate aminotransf 40.9 3.1E+02 0.0067 25.7 11.5 52 72-124 99-150 (394)
304 cd05188 MDR Medium chain reduc 40.9 1.8E+02 0.004 24.8 8.5 48 66-117 133-180 (271)
305 PRK07677 short chain dehydroge 40.9 2.2E+02 0.0047 24.5 8.9 55 69-123 2-57 (252)
306 PRK08936 glucose-1-dehydrogena 40.8 2.4E+02 0.0052 24.4 9.7 55 69-123 8-64 (261)
307 COG0399 WecE Predicted pyridox 40.8 2E+02 0.0043 27.2 8.9 55 70-124 50-104 (374)
308 PRK06702 O-acetylhomoserine am 40.7 2.1E+02 0.0045 27.7 9.2 78 72-154 79-160 (432)
309 COG0300 DltE Short-chain dehyd 40.6 2.2E+02 0.0048 25.5 8.7 56 69-124 7-64 (265)
310 PRK07806 short chain dehydroge 40.6 2.3E+02 0.005 24.1 9.7 56 69-124 7-64 (248)
311 KOG1205 Predicted dehydrogenas 40.6 85 0.0018 28.4 6.1 55 69-123 13-70 (282)
312 PRK07454 short chain dehydroge 40.5 2E+02 0.0044 24.4 8.6 55 69-123 7-62 (241)
313 TIGR02823 oxido_YhdH putative 40.4 1.9E+02 0.0042 25.8 8.8 50 65-117 142-192 (323)
314 CHL00194 ycf39 Ycf39; Provisio 40.4 1.2E+02 0.0027 27.4 7.5 32 70-101 2-33 (317)
315 PRK14805 ornithine carbamoyltr 40.4 1.1E+02 0.0024 28.0 7.0 25 78-102 157-181 (302)
316 TIGR03206 benzo_BadH 2-hydroxy 40.2 2.2E+02 0.0048 24.2 8.9 56 69-124 4-60 (250)
317 PRK08017 oxidoreductase; Provi 40.1 2.4E+02 0.0052 24.2 9.6 51 70-123 4-54 (256)
318 TIGR00877 purD phosphoribosyla 40.1 3.2E+02 0.0069 25.9 10.5 28 72-99 3-30 (423)
319 PF02737 3HCDH_N: 3-hydroxyacy 40.0 59 0.0013 27.1 4.8 31 72-102 2-32 (180)
320 PRK12775 putative trifunctiona 39.6 3.4E+02 0.0073 29.5 11.4 31 71-101 432-462 (1006)
321 PRK11609 nicotinamidase/pyrazi 39.5 2.4E+02 0.0051 23.9 9.0 53 69-121 143-204 (212)
322 PRK12429 3-hydroxybutyrate deh 39.5 2.4E+02 0.0053 24.1 9.2 56 69-124 5-61 (258)
323 PRK07890 short chain dehydroge 39.5 2.3E+02 0.0049 24.3 8.8 56 69-124 6-62 (258)
324 COG2242 CobL Precorrin-6B meth 39.4 2.4E+02 0.0051 23.9 8.5 152 33-213 7-165 (187)
325 cd08264 Zn_ADH_like2 Alcohol d 39.4 1.9E+02 0.0042 25.9 8.6 36 63-98 158-193 (325)
326 PRK14031 glutamate dehydrogena 39.1 1.5E+02 0.0032 28.8 7.9 53 49-101 208-260 (444)
327 PRK05867 short chain dehydroge 39.0 2.4E+02 0.0051 24.3 8.8 55 69-123 10-65 (253)
328 TIGR02415 23BDH acetoin reduct 38.9 2.5E+02 0.0054 24.0 9.0 55 70-124 2-57 (254)
329 PF02310 B12-binding: B12 bind 38.8 1.7E+02 0.0036 22.0 7.0 93 82-184 18-114 (121)
330 COG0623 FabI Enoyl-[acyl-carri 38.8 1.6E+02 0.0035 26.0 7.2 67 110-183 27-93 (259)
331 cd08299 alcohol_DH_class_I_II_ 38.8 2.2E+02 0.0047 26.6 9.0 53 62-117 185-237 (373)
332 PRK06079 enoyl-(acyl carrier p 38.7 2E+02 0.0043 24.9 8.3 32 69-100 8-41 (252)
333 PRK06077 fabG 3-ketoacyl-(acyl 38.6 2.1E+02 0.0045 24.5 8.4 56 69-124 7-64 (252)
334 COG0026 PurK Phosphoribosylami 38.6 60 0.0013 30.5 4.9 32 72-103 4-35 (375)
335 PRK02255 putrescine carbamoylt 38.6 1.8E+02 0.0039 27.1 8.2 25 78-102 164-188 (338)
336 cd08244 MDR_enoyl_red Possible 38.6 2.8E+02 0.0062 24.6 10.1 52 62-116 137-188 (324)
337 PRK09422 ethanol-active dehydr 38.4 2.1E+02 0.0046 25.8 8.8 55 61-119 156-211 (338)
338 PRK08264 short chain dehydroge 38.3 1.6E+02 0.0035 25.0 7.6 33 69-101 7-40 (238)
339 PRK07904 short chain dehydroge 38.2 2.7E+02 0.0058 24.2 9.3 53 69-121 9-65 (253)
340 TIGR01318 gltD_gamma_fam gluta 38.2 1.5E+02 0.0032 28.9 7.9 51 70-120 142-210 (467)
341 cd05285 sorbitol_DH Sorbitol d 38.1 3E+02 0.0065 25.0 9.8 55 61-118 156-210 (343)
342 cd06268 PBP1_ABC_transporter_L 37.9 2.6E+02 0.0057 24.0 15.4 148 54-212 57-227 (298)
343 PRK07231 fabG 3-ketoacyl-(acyl 37.9 2.5E+02 0.0055 23.8 9.4 33 69-101 6-38 (251)
344 PRK08085 gluconate 5-dehydroge 37.9 2.6E+02 0.0057 24.0 9.4 55 69-123 10-65 (254)
345 TIGR01963 PHB_DH 3-hydroxybuty 37.9 2.3E+02 0.005 24.1 8.6 55 70-124 3-58 (255)
346 PRK09545 znuA high-affinity zi 37.9 2.3E+02 0.0049 25.9 8.7 85 83-171 212-306 (311)
347 PLN02178 cinnamyl-alcohol dehy 37.7 1.2E+02 0.0025 28.5 7.0 50 67-119 178-227 (375)
348 cd08248 RTN4I1 Human Reticulon 37.7 1.4E+02 0.0031 27.1 7.5 46 68-117 163-208 (350)
349 cd08240 6_hydroxyhexanoate_dh_ 37.5 2.4E+02 0.0052 25.7 9.0 48 67-117 175-222 (350)
350 PRK05653 fabG 3-ketoacyl-(acyl 37.3 2.5E+02 0.0055 23.6 9.4 56 69-124 6-62 (246)
351 PRK12769 putative oxidoreducta 37.3 68 0.0015 32.7 5.6 51 70-120 328-396 (654)
352 PRK10083 putative oxidoreducta 37.2 3.1E+02 0.0068 24.7 10.2 57 61-120 154-211 (339)
353 cd08270 MDR4 Medium chain dehy 37.2 1.6E+02 0.0035 26.0 7.7 48 67-117 132-179 (305)
354 PRK06947 glucose-1-dehydrogena 37.2 2E+02 0.0043 24.6 8.0 55 70-124 4-60 (248)
355 PRK08213 gluconate 5-dehydroge 37.2 2.7E+02 0.0058 24.0 8.9 56 69-124 13-69 (259)
356 TIGR03325 BphB_TodD cis-2,3-di 37.2 2.8E+02 0.006 24.0 9.4 51 69-122 6-57 (262)
357 KOG0022 Alcohol dehydrogenase, 37.1 3.5E+02 0.0076 25.2 12.8 113 64-213 189-301 (375)
358 TIGR02817 adh_fam_1 zinc-bindi 37.1 2.9E+02 0.0063 24.8 9.4 47 68-117 149-196 (336)
359 PRK07814 short chain dehydroge 36.9 2.7E+02 0.0058 24.2 8.9 54 69-122 11-65 (263)
360 TIGR03540 DapC_direct LL-diami 36.8 3.5E+02 0.0076 25.1 12.7 51 72-123 94-144 (383)
361 PRK12810 gltD glutamate syntha 36.7 1.5E+02 0.0033 28.7 7.9 50 71-120 145-212 (471)
362 PF00290 Trp_syntA: Tryptophan 36.7 3.1E+02 0.0067 24.5 11.8 32 83-114 131-162 (259)
363 cd08269 Zn_ADH9 Alcohol dehydr 36.7 3E+02 0.0065 24.3 11.2 51 62-116 124-175 (312)
364 PRK06113 7-alpha-hydroxysteroi 36.7 2.8E+02 0.006 23.9 8.9 55 69-123 12-67 (255)
365 PF00670 AdoHcyase_NAD: S-aden 36.7 2.4E+02 0.0053 23.2 9.1 52 64-119 19-70 (162)
366 PRK06138 short chain dehydroge 36.6 2.7E+02 0.0058 23.7 9.1 55 69-124 6-61 (252)
367 cd05278 FDH_like Formaldehyde 36.6 2.5E+02 0.0054 25.4 8.9 52 63-117 163-214 (347)
368 PF12831 FAD_oxidored: FAD dep 36.3 49 0.0011 31.7 4.3 31 72-102 2-32 (428)
369 cd08262 Zn_ADH8 Alcohol dehydr 36.3 3.2E+02 0.0069 24.7 9.6 54 61-117 155-208 (341)
370 TIGR03537 DapC succinyldiamino 36.3 3.4E+02 0.0074 24.8 13.1 78 43-123 35-116 (350)
371 PRK06500 short chain dehydroge 36.3 2.7E+02 0.0058 23.7 9.5 51 69-122 7-58 (249)
372 PRK06505 enoyl-(acyl carrier p 36.2 3E+02 0.0065 24.2 9.3 31 69-99 8-40 (271)
373 PRK09072 short chain dehydroge 36.2 2.5E+02 0.0055 24.3 8.6 33 69-101 6-38 (263)
374 PRK07775 short chain dehydroge 36.1 3E+02 0.0065 24.1 9.3 56 69-124 11-67 (274)
375 PRK08265 short chain dehydroge 36.1 2.9E+02 0.0063 24.0 9.6 53 69-123 7-59 (261)
376 cd05284 arabinose_DH_like D-ar 36.0 2.5E+02 0.0053 25.4 8.8 49 65-117 165-214 (340)
377 COG2085 Predicted dinucleotide 35.9 2.9E+02 0.0063 23.9 11.3 31 72-102 4-34 (211)
378 PRK09414 glutamate dehydrogena 35.9 1.5E+02 0.0032 28.8 7.3 52 49-100 212-263 (445)
379 PRK14804 ornithine carbamoyltr 35.7 1.8E+02 0.004 26.6 7.7 28 76-103 161-188 (311)
380 cd00288 Pyruvate_Kinase Pyruva 35.6 4.4E+02 0.0095 25.9 11.1 120 84-210 264-407 (480)
381 cd05283 CAD1 Cinnamyl alcohol 35.5 1.7E+02 0.0037 26.6 7.6 51 65-119 167-217 (337)
382 PLN03026 histidinol-phosphate 35.4 2.7E+02 0.0058 26.0 9.1 82 72-157 106-188 (380)
383 cd08250 Mgc45594_like Mgc45594 35.4 3.3E+02 0.0071 24.4 11.1 52 63-117 135-186 (329)
384 PTZ00433 tyrosine aminotransfe 35.3 2.7E+02 0.0058 26.3 9.2 52 71-123 106-157 (412)
385 PRK06483 dihydromonapterin red 35.2 2.8E+02 0.006 23.5 9.8 53 69-123 3-55 (236)
386 PRK15407 lipopolysaccharide bi 35.2 3.4E+02 0.0075 26.1 9.9 54 71-124 80-141 (438)
387 PRK05476 S-adenosyl-L-homocyst 35.2 2.6E+02 0.0057 26.9 8.9 48 67-118 211-258 (425)
388 smart00460 TGc Transglutaminas 35.1 52 0.0011 21.9 3.2 26 75-100 7-32 (68)
389 PRK08335 translation initiatio 35.0 1.6E+02 0.0035 26.5 7.0 55 70-124 111-169 (275)
390 PRK06841 short chain dehydroge 34.9 2.9E+02 0.0063 23.6 9.1 33 69-101 16-48 (255)
391 TIGR02824 quinone_pig3 putativ 34.9 3.2E+02 0.0068 24.0 11.0 54 61-117 133-186 (325)
392 cd08249 enoyl_reductase_like e 34.9 2.5E+02 0.0053 25.6 8.6 48 66-117 153-200 (339)
393 PRK11658 UDP-4-amino-4-deoxy-L 34.7 1.1E+02 0.0024 28.7 6.4 53 72-124 51-103 (379)
394 PF13580 SIS_2: SIS domain; PD 34.6 88 0.0019 24.7 4.9 33 67-99 103-137 (138)
395 PRK05717 oxidoreductase; Valid 34.6 3E+02 0.0065 23.7 9.4 54 69-124 11-64 (255)
396 PRK08363 alanine aminotransfer 34.5 2.7E+02 0.006 26.0 9.1 49 72-121 96-144 (398)
397 PF06068 TIP49: TIP49 C-termin 34.5 2E+02 0.0043 27.3 7.6 56 44-101 27-86 (398)
398 PF11760 CbiG_N: Cobalamin syn 34.3 97 0.0021 22.5 4.5 49 166-214 3-51 (84)
399 PRK04284 ornithine carbamoyltr 34.3 2.3E+02 0.005 26.3 8.2 25 78-102 166-190 (332)
400 PF01494 FAD_binding_3: FAD bi 34.2 64 0.0014 29.1 4.6 31 71-101 3-33 (356)
401 cd08290 ETR 2-enoyl thioester 34.2 1.6E+02 0.0034 26.7 7.2 57 64-120 143-200 (341)
402 TIGR03772 anch_rpt_subst ancho 34.0 2.3E+02 0.005 27.8 8.4 86 83-171 380-474 (479)
403 PF04273 DUF442: Putative phos 34.0 2.1E+02 0.0046 21.8 7.6 88 100-192 12-103 (110)
404 PRK12859 3-ketoacyl-(acyl-carr 34.0 2.6E+02 0.0057 24.2 8.3 56 69-124 7-76 (256)
405 PF04989 CmcI: Cephalosporin h 33.8 1.2E+02 0.0027 26.0 5.8 46 163-210 23-69 (206)
406 cd05279 Zn_ADH1 Liver alcohol 33.8 2.9E+02 0.0063 25.5 9.0 53 62-117 178-230 (365)
407 PRK06953 short chain dehydroge 33.8 2E+02 0.0044 24.2 7.4 51 70-123 3-53 (222)
408 PLN02586 probable cinnamyl alc 33.8 2.3E+02 0.0049 26.3 8.2 52 65-119 181-232 (360)
409 PF00091 Tubulin: Tubulin/FtsZ 33.7 2.3E+02 0.005 24.2 7.7 100 151-258 90-204 (216)
410 PRK06198 short chain dehydroge 33.6 3.1E+02 0.0067 23.5 9.3 55 69-123 7-63 (260)
411 PRK08251 short chain dehydroge 33.6 3E+02 0.0065 23.4 8.9 56 69-124 3-61 (248)
412 PF11814 DUF3335: Peptidase_C3 33.6 1.1E+02 0.0023 26.4 5.3 33 70-102 43-77 (207)
413 PRK12414 putative aminotransfe 33.5 4E+02 0.0087 24.8 12.7 52 72-124 93-144 (384)
414 TIGR00511 ribulose_e2b2 ribose 33.4 1.6E+02 0.0034 26.9 6.8 54 70-123 117-174 (301)
415 PRK12747 short chain dehydroge 33.4 2.6E+02 0.0056 24.0 8.2 54 69-122 5-60 (252)
416 PF13450 NAD_binding_8: NAD(P) 33.4 74 0.0016 21.7 3.7 27 76-102 3-29 (68)
417 PF00448 SRP54: SRP54-type pro 33.3 1.9E+02 0.0042 24.4 7.0 79 42-124 8-92 (196)
418 TIGR01264 tyr_amTase_E tyrosin 33.2 4.1E+02 0.0089 24.9 10.1 52 71-123 97-148 (401)
419 PRK07985 oxidoreductase; Provi 33.2 3.5E+02 0.0077 24.1 9.5 55 69-123 50-107 (294)
420 PRK13984 putative oxidoreducta 33.1 1.8E+02 0.0038 29.3 7.8 50 71-120 285-352 (604)
421 PRK13243 glyoxylate reductase; 33.1 4E+02 0.0086 24.6 10.6 103 70-196 151-255 (333)
422 PF00702 Hydrolase: haloacid d 33.1 1.8E+02 0.004 24.0 7.0 67 51-124 131-204 (215)
423 PRK07060 short chain dehydroge 33.0 2.4E+02 0.0051 24.0 7.8 53 69-124 10-63 (245)
424 PRK02731 histidinol-phosphate 32.9 2.8E+02 0.006 25.5 8.7 51 72-123 87-137 (367)
425 PRK08594 enoyl-(acyl carrier p 32.8 3.3E+02 0.0072 23.6 9.5 32 69-100 8-41 (257)
426 PRK06202 hypothetical protein; 32.8 58 0.0013 28.1 3.8 38 175-212 62-99 (232)
427 PRK01688 histidinol-phosphate 32.8 3.9E+02 0.0086 24.5 11.0 85 72-162 77-162 (351)
428 PRK02102 ornithine carbamoyltr 32.7 2.4E+02 0.0052 26.2 7.9 44 79-122 167-216 (331)
429 PRK08535 translation initiatio 32.6 1.6E+02 0.0034 27.1 6.7 55 70-124 122-180 (310)
430 PLN02583 cinnamoyl-CoA reducta 32.5 2.3E+02 0.005 25.3 7.9 33 69-101 7-39 (297)
431 TIGR00746 arcC carbamate kinas 32.5 1.9E+02 0.0042 26.5 7.2 34 48-86 27-60 (310)
432 PRK06290 aspartate aminotransf 32.2 4.4E+02 0.0096 24.9 12.6 53 71-124 108-160 (410)
433 PRK09291 short chain dehydroge 32.0 1.9E+02 0.0042 24.8 7.1 33 69-101 3-35 (257)
434 cd08272 MDR6 Medium chain dehy 31.9 3.6E+02 0.0077 23.8 9.2 54 61-118 138-191 (326)
435 PLN02494 adenosylhomocysteinas 31.9 2E+02 0.0043 28.2 7.5 90 70-186 255-344 (477)
436 PRK06847 hypothetical protein; 31.8 69 0.0015 29.7 4.4 30 71-100 6-35 (375)
437 PRK06354 pyruvate kinase; Prov 31.6 5.6E+02 0.012 25.9 12.0 125 82-212 267-411 (590)
438 PRK06358 threonine-phosphate d 31.6 3.7E+02 0.0081 24.7 9.3 50 71-123 73-122 (354)
439 PRK11749 dihydropyrimidine deh 31.5 2E+02 0.0043 27.8 7.6 51 71-121 275-331 (457)
440 cd08550 GlyDH-like Glycerol_de 31.4 2.2E+02 0.0049 26.3 7.7 34 174-210 77-110 (349)
441 PRK04148 hypothetical protein; 31.4 2.4E+02 0.0051 22.5 6.7 48 71-122 19-66 (134)
442 PLN02253 xanthoxin dehydrogena 31.4 2.9E+02 0.0063 24.1 8.3 32 69-100 19-50 (280)
443 PRK06720 hypothetical protein; 31.3 2.9E+02 0.0063 22.6 9.2 31 69-99 17-47 (169)
444 cd08255 2-desacetyl-2-hydroxye 31.2 3.5E+02 0.0076 23.5 8.9 50 62-115 92-142 (277)
445 PRK09105 putative aminotransfe 31.2 3.1E+02 0.0067 25.5 8.7 53 71-124 97-149 (370)
446 PRK09126 hypothetical protein; 31.1 66 0.0014 30.0 4.2 29 72-100 6-34 (392)
447 PRK05650 short chain dehydroge 31.1 3.5E+02 0.0077 23.5 8.9 54 71-124 3-57 (270)
448 cd05286 QOR2 Quinone oxidoredu 31.0 3.6E+02 0.0078 23.5 10.9 51 63-116 132-182 (320)
449 PRK10624 L-1,2-propanediol oxi 30.9 2.5E+02 0.0054 26.4 8.0 14 174-188 87-100 (382)
450 TIGR03877 thermo_KaiC_1 KaiC d 30.7 1.6E+02 0.0035 25.5 6.3 55 63-117 16-74 (237)
451 PLN02477 glutamate dehydrogena 30.6 4E+02 0.0087 25.6 9.3 51 49-100 186-237 (410)
452 COG4671 Predicted glycosyl tra 30.5 4.7E+02 0.01 24.7 9.3 48 69-116 220-274 (400)
453 cd08261 Zn_ADH7 Alcohol dehydr 30.5 4.1E+02 0.0088 23.9 10.9 51 62-116 154-204 (337)
454 PRK05839 hypothetical protein; 30.5 4.5E+02 0.0097 24.4 11.7 79 43-124 59-139 (374)
455 PLN02514 cinnamyl-alcohol dehy 30.4 4.3E+02 0.0094 24.3 9.8 54 63-119 176-229 (357)
456 PRK06753 hypothetical protein; 30.4 78 0.0017 29.3 4.5 29 72-100 3-31 (373)
457 cd08286 FDH_like_ADH2 formalde 30.4 1.9E+02 0.004 26.3 7.0 50 64-117 163-213 (345)
458 PRK12778 putative bifunctional 30.2 1.9E+02 0.0042 30.0 7.7 51 71-121 572-628 (752)
459 PRK10538 malonic semialdehyde 30.1 3.5E+02 0.0076 23.1 9.2 50 71-123 3-53 (248)
460 PF00890 FAD_binding_2: FAD bi 30.1 75 0.0016 30.0 4.4 31 72-102 2-32 (417)
461 PF04122 CW_binding_2: Putativ 30.0 2.1E+02 0.0046 20.5 10.2 54 70-124 26-82 (92)
462 PRK07774 short chain dehydroge 29.9 3.5E+02 0.0075 23.0 9.2 53 69-121 7-60 (250)
463 COG1184 GCD2 Translation initi 29.9 1.8E+02 0.0039 26.6 6.4 54 70-123 121-178 (301)
464 cd00616 AHBA_syn 3-amino-5-hyd 29.9 2.6E+02 0.0056 25.4 7.9 53 72-124 36-88 (352)
465 cd08253 zeta_crystallin Zeta-c 29.8 3.8E+02 0.0083 23.4 10.8 51 63-116 140-190 (325)
466 cd06450 DOPA_deC_like DOPA dec 29.8 3.6E+02 0.0078 24.4 8.8 53 72-124 60-125 (345)
467 cd05289 MDR_like_2 alcohol deh 29.7 3.8E+02 0.0082 23.3 9.1 50 63-116 140-189 (309)
468 cd05288 PGDH Prostaglandin deh 29.6 4.1E+02 0.0088 23.7 10.8 52 63-117 141-193 (329)
469 PRK06425 histidinol-phosphate 29.5 3.1E+02 0.0067 25.0 8.3 51 71-124 59-109 (332)
470 cd08238 sorbose_phosphate_red 29.5 2.3E+02 0.0049 26.8 7.6 50 63-114 171-222 (410)
471 PRK09853 putative selenate red 29.5 2.2E+02 0.0047 30.9 7.9 51 70-120 540-608 (1019)
472 PRK07576 short chain dehydroge 29.3 3.8E+02 0.0083 23.3 9.0 54 69-122 10-64 (264)
473 PRK12742 oxidoreductase; Provi 29.2 2.4E+02 0.0051 23.8 7.1 53 69-123 7-60 (237)
474 PRK07023 short chain dehydroge 29.1 3.2E+02 0.007 23.2 8.0 51 70-124 3-53 (243)
475 PRK08339 short chain dehydroge 29.0 3.7E+02 0.008 23.4 8.5 32 69-100 9-40 (263)
476 PRK13355 bifunctional HTH-doma 29.0 5.6E+02 0.012 25.1 11.0 75 44-123 185-261 (517)
477 COG0169 AroE Shikimate 5-dehyd 29.0 1.8E+02 0.0039 26.3 6.3 69 28-99 85-156 (283)
478 PRK08416 7-alpha-hydroxysteroi 28.9 3.8E+02 0.0083 23.1 9.2 32 69-100 9-40 (260)
479 PRK12562 ornithine carbamoyltr 28.7 2.9E+02 0.0063 25.7 7.8 44 79-122 168-217 (334)
480 cd01534 4RHOD_Repeat_3 Member 28.7 1.3E+02 0.0028 21.6 4.6 34 69-103 57-90 (95)
481 COG2227 UbiG 2-polyprenyl-3-me 28.7 1.9E+02 0.0041 25.6 6.1 24 114-140 80-103 (243)
482 PRK07856 short chain dehydroge 28.7 3.5E+02 0.0077 23.1 8.2 33 69-101 7-39 (252)
483 PRK05693 short chain dehydroge 28.6 4E+02 0.0086 23.2 10.7 52 70-124 3-54 (274)
484 PRK08354 putative aminotransfe 28.5 4.4E+02 0.0094 23.7 10.4 51 72-124 57-107 (311)
485 PF00155 Aminotran_1_2: Aminot 28.4 1.4E+02 0.0031 27.3 5.9 52 71-122 70-121 (363)
486 PTZ00075 Adenosylhomocysteinas 28.3 4.5E+02 0.0097 25.8 9.2 94 65-186 251-344 (476)
487 COG0492 TrxB Thioredoxin reduc 28.3 92 0.002 28.5 4.4 31 72-102 6-36 (305)
488 PRK07326 short chain dehydroge 28.3 3.6E+02 0.0078 22.7 9.4 32 69-100 7-38 (237)
489 COG0436 Aspartate/tyrosine/aro 28.2 5.2E+02 0.011 24.5 12.8 107 44-154 65-176 (393)
490 cd01137 PsaA Metal binding pro 28.2 2.9E+02 0.0063 24.8 7.7 55 83-141 186-248 (287)
491 PRK09242 tropinone reductase; 28.2 3.8E+02 0.0083 22.9 9.0 56 69-124 10-68 (257)
492 TIGR01182 eda Entner-Doudoroff 28.2 3.8E+02 0.0083 22.9 11.8 115 73-207 39-154 (204)
493 PRK06200 2,3-dihydroxy-2,3-dih 28.1 3.9E+02 0.0085 23.0 9.2 31 69-99 7-37 (263)
494 cd08191 HHD 6-hydroxyhexanoate 28.0 4.9E+02 0.011 24.5 9.5 15 173-188 78-92 (386)
495 PRK05872 short chain dehydroge 28.0 3.8E+02 0.0082 23.9 8.5 31 69-99 10-40 (296)
496 TIGR03552 F420_cofC 2-phospho- 28.0 3.4E+02 0.0075 22.3 11.2 68 112-185 62-129 (195)
497 cd06451 AGAT_like Alanine-glyo 28.0 4.6E+02 0.01 23.8 9.4 51 72-124 53-106 (356)
498 cd08265 Zn_ADH3 Alcohol dehydr 27.9 2.8E+02 0.0061 25.8 7.9 53 63-118 199-251 (384)
499 smart00822 PKS_KR This enzymat 27.9 2.9E+02 0.0063 21.5 8.5 52 71-122 3-59 (180)
500 TIGR02095 glgA glycogen/starch 27.9 2.2E+02 0.0049 27.4 7.4 29 75-103 17-45 (473)
No 1
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.9e-69 Score=495.90 Aligned_cols=317 Identities=77% Similarity=1.214 Sum_probs=290.7
Q ss_pred hHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
.+++++..+++|||++++.++...+.+||+|+|++|||||||||++.+++..+.++|.+.+|.+.||++|+||||+|+|+
T Consensus 5 ~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~ 84 (322)
T PLN02565 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAF 84 (322)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHH
Confidence 45678999999999999988666668999999999999999999999999999999988888677999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHH
Q 020606 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 87 ~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
+|+.+|++|+||||+++++.|+++++.+||+|+.+++..+++++.+.+++++++.+++++++||+|+.++++||.|+++|
T Consensus 85 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~E 164 (322)
T PLN02565 85 MAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPE 164 (322)
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876446788889999887765789999999999987899999999
Q ss_pred HHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEE
Q 020606 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (323)
Q Consensus 167 i~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 246 (323)
|++|+++.||+||+|+|+||+++|++.+||+.+|++|||+|||++++.+..+++.++.+++++.+..|..+..+.+|+++
T Consensus 165 i~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v 244 (322)
T PLN02565 165 IWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVV 244 (322)
T ss_pred HHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEE
Confidence 99999768999999999999999999999999999999999999998887777777778899887666666677899999
Q ss_pred EeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhchhHHhhccCCCCC
Q 020606 247 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 323 (323)
Q Consensus 247 ~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~~~~~~~~~~~~~~ 323 (323)
.|+|+|+++++++|++++|+++||++|+++++++++++....++++||++++|+|+||+++.++++|.....||-|.
T Consensus 245 ~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~ 321 (322)
T PLN02565 245 QVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFE 321 (322)
T ss_pred EECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHHHHhcCccC
Confidence 99999999999999999999999999999999999987765567899999999999999999999999999999763
No 2
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.5e-68 Score=496.81 Aligned_cols=316 Identities=60% Similarity=1.002 Sum_probs=289.5
Q ss_pred hHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
..+++.+.+++|||+++++++...|++||+|+|++|||||||||++.+++.+++++|.+.||+++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 34788999999999999999888889999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHH
Q 020606 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 87 ~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
+|+.+|++|+||||+.++..|++.++.+||+|+.++...++...++.+++++++.++++|++||+|+.++++||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865445577888888888777899999999999997799999999
Q ss_pred HHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEE
Q 020606 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (323)
Q Consensus 167 i~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 246 (323)
|++|+.+.+|+||+|+|||||++|+++++|+.+|++|||||||++++.+..+++..+.+.+++.+..|..+..+.+|+++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v 288 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence 99998668999999999999999999999999999999999999998777776666677788777656667778899999
Q ss_pred EeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhchhHHhhccCCCC
Q 020606 247 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPI 322 (323)
Q Consensus 247 ~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~~~~~~~~~~~~~ 322 (323)
.|+|+|+++++++|++++|++++|++|+++++++++++....++++||+|++|+|+||+|+.++++|.+++++|.-
T Consensus 289 ~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~ 364 (368)
T PLN02556 289 EVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQP 364 (368)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988765446789999999999999999999999999999953
No 3
>PLN00011 cysteine synthase
Probab=100.00 E-value=2.5e-67 Score=483.35 Aligned_cols=322 Identities=77% Similarity=1.202 Sum_probs=291.2
Q ss_pred CchhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChH
Q 020606 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNT 80 (323)
Q Consensus 1 ~~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~ 80 (323)
|++-+...+++...+++|||+++++++...|.+||+|+|++|||||||+|++.+++..++++|.+.|++++||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 66667777888899999999999998876678999999999999999999999999999999998888778999999999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhh
Q 020606 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY 160 (323)
Q Consensus 81 g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (323)
|+|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++.....+++++.+++++++.++++|++||+|+.++..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999876334566778888887766789999999999987799
Q ss_pred hchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCcccccc
Q 020606 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVA 240 (323)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 240 (323)
.++++||++|+.++||+||+|+|+|||++|++.++|+.+|+++||||||++++.+..+++..+.+++++.+..|..+...
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 240 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLT 240 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChh
Confidence 99999999998668999999999999999999999999999999999999998887777777778888887666666677
Q ss_pred CcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhchhHHhhccCC
Q 020606 241 MLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 320 (323)
Q Consensus 241 ~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~~~~~~~~~~~ 320 (323)
.+|+++.|+|+|++++++++++++|+++||++|+++++++++++....+++++|+|++|+|+||+|+.+++.|..+..+.
T Consensus 241 ~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~ 320 (323)
T PLN00011 241 IVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENL 320 (323)
T ss_pred hCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHhhhcC
Confidence 89999999999999999999999999999999999999999887654567899999999999999999999998886666
Q ss_pred CC
Q 020606 321 PI 322 (323)
Q Consensus 321 ~~ 322 (323)
+|
T Consensus 321 ~~ 322 (323)
T PLN00011 321 PI 322 (323)
T ss_pred CC
Confidence 65
No 4
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-67 Score=461.85 Aligned_cols=295 Identities=58% Similarity=0.941 Sum_probs=278.0
Q ss_pred HHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
+.+...+++|||+++.++....+++||+|+|++||+||.|||.+.+++.+|+++|.+.||. +||++||||+|+++|+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHH
Confidence 4577888999999999998888899999999999999999999999999999999999996 599999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCC-hhHHHHHHHHHHHhCCC-eEeeCCCCCCCchhhhhhchHHH
Q 020606 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG-FEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
+.+|+++++|||+.++..|++.|+.|||+|+.++...+ +..+.+++++++++.++ .++.+||+||.|+++||.|++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 77889999999988877 67777999999999999999999
Q ss_pred HHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEE
Q 020606 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (323)
Q Consensus 167 i~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 246 (323)
|++|+++.+|++|+.+|||||++|+++++|+.+|++++++|||++++.+..+. .++.++||+.+.+|..+..+.+|+++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEE
Confidence 99999888999999999999999999999999999999999999999887666 88999999999999888889999999
Q ss_pred EeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcc
Q 020606 247 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306 (323)
Q Consensus 247 ~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~ 306 (323)
.|+|+|+++++++|++++|+++++|||++++|+++++++. .++++||+|+||.|+||+|
T Consensus 241 ~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~-~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 241 RVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKEL-PAGKTIVTILPDSGERYLS 299 (300)
T ss_pred EECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhc-CCCCeEEEEECCCcccccC
Confidence 9999999999999999999999999999999999998875 3588999999999999998
No 5
>PLN03013 cysteine synthase
Probab=100.00 E-value=9.9e-67 Score=486.66 Aligned_cols=311 Identities=67% Similarity=1.090 Sum_probs=283.5
Q ss_pred hHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
..++|...+++|||++++.+++..+++||+|+|++|||||||||++.+++.+++++|.+.+|.++||++|+||||+|+|+
T Consensus 113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~ 192 (429)
T PLN03013 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF 192 (429)
T ss_pred HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence 55789999999999999999887788999999999999999999999999999999998888777999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHH
Q 020606 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 87 ~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
+|+.+|++++||||+++++.|+++|+.+||+|+.+++...++++++.+++++++.++++|++||+||.++++||.|+++|
T Consensus 193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E 272 (429)
T PLN03013 193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE 272 (429)
T ss_pred HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876556788899999888766899999999999997799999999
Q ss_pred HHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEE
Q 020606 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (323)
Q Consensus 167 i~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 246 (323)
|++|++++||+||+|+|+||+++|+++++|+..|+++||||||++++.+..+++.++.++|++.+.+|+.++...+|+++
T Consensus 273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv 352 (429)
T PLN03013 273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352 (429)
T ss_pred HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEE
Confidence 99999778999999999999999999999999999999999999998887777777788999988778888888999999
Q ss_pred EeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEE-EEEecCCCCCCcchh--hchhHHhhc
Q 020606 247 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLI-VVIFPSAGERYLSTA--LFESIRHEV 317 (323)
Q Consensus 247 ~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~v-v~v~~~gg~~~~~~~--~~~~~~~~~ 317 (323)
.|+|+|+++++++|++++|+++||++|+++++++++++....+++++ +++++++|++|.++. +.++-|..+
T Consensus 353 ~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~~~~~~~~~~~~ 426 (429)
T PLN03013 353 AISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRCSSLSGKRWRKC 426 (429)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhhhcCCCcchhhc
Confidence 99999999999999999999999999999999999887654456665 667788999999984 666666544
No 6
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.9e-64 Score=466.60 Aligned_cols=310 Identities=44% Similarity=0.706 Sum_probs=269.8
Q ss_pred hHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
.++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.+++++|.+.++ .+|+++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHH
Confidence 35688899999999999999998899999999999999999999999999999999977666 45999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC------ChhHHHHHHHHHHHhC-CCeEeeCCCCCCCchhhh
Q 020606 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV------GFEGFVKKGEEILNRT-PNGYILGQFENPANPEIH 159 (323)
Q Consensus 87 ~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g 159 (323)
+|+++|++|+||||+.+++.|+++++.+||+|+.++... ..+.+.+.++++.++. .+++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998641 1122334444444443 378999999999987679
Q ss_pred hhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc---CCC---CccccccccCCCCC
Q 020606 160 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQ---PGKHLIQGIGAGVI 233 (323)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~---~~~---~~~~~~~gl~~~~~ 233 (323)
|.++++||++|++.+||+||+|+|+||+++|++.+|++..|+++||+|||++++.+. .+. ...+.+++++.+..
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~ 241 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRI 241 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcC
Confidence 999999999999767999999999999999999999999999999999999985432 122 23467788888765
Q ss_pred CccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhchhH
Q 020606 234 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 313 (323)
Q Consensus 234 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~~~~ 313 (323)
++.+....+|+++.|+|+|++++++++++++|+++||++|+++++++++++.. .++++||+|+|++|+||++++|+|+|
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~ 320 (330)
T PRK10717 242 TANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDF 320 (330)
T ss_pred CcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHH
Confidence 66566667899999999999999999999999999999999999999987653 46789999999999999999999999
Q ss_pred Hhhcc
Q 020606 314 RHEVE 318 (323)
Q Consensus 314 ~~~~~ 318 (323)
..+..
T Consensus 321 ~~~~~ 325 (330)
T PRK10717 321 LREKG 325 (330)
T ss_pred HHhcC
Confidence 98764
No 7
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=2.3e-64 Score=460.08 Aligned_cols=297 Identities=62% Similarity=1.002 Sum_probs=267.9
Q ss_pred hhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 020606 12 TELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (323)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~ 91 (323)
...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..++++|.+.++. +|+++|+||||+|+|++|+++
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHc
Confidence 3468999999999999888899999999999999999999999999999999766664 599999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhh
Q 020606 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDS 171 (323)
Q Consensus 92 Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~ 171 (323)
|++|+||||+++++.|+++++.+||+|+.++++..++++++.+++++++.+++++++||+|+.++.+||.++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999987645688999999988875578899999999986679999999999999
Q ss_pred CCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEEEeCHH
Q 020606 172 GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSE 251 (323)
Q Consensus 172 ~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~ 251 (323)
+++||+||+|+|+||+++|++.+|++.+|.+|||+|||.+++.+..+.+......+++.+..|+.+..+++|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 76799999999999999999999999999999999999999887665555555667776666777777889999999999
Q ss_pred HHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhh
Q 020606 252 EAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTAL 309 (323)
Q Consensus 252 e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~ 309 (323)
|+++++++|++++|+++||++|+++++++++.+....++++||+++||.|.||.++..
T Consensus 241 e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~~~ 298 (299)
T TIGR01136 241 DAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTGL 298 (299)
T ss_pred HHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCccc
Confidence 9999999999999999999999999999998876445578999999999999999743
No 8
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=7.3e-64 Score=454.82 Aligned_cols=293 Identities=44% Similarity=0.725 Sum_probs=258.8
Q ss_pred hHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
.+++|...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.+++++|.+.++ ++||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence 34678888999999999999888889999999999999999999999999999999987776 45999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHH
Q 020606 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 87 ~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
+|+.+|++|+||||+++++.|++.++.+||+|+.++....++++.+.+++++++. +++|++||+|+.++..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999997445788888888887775 789999999999987789999999
Q ss_pred HHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEE
Q 020606 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246 (323)
Q Consensus 167 i~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 246 (323)
|++|+++.+|+||+|+|+||+++|++.+||+.+|++|||||||.+++.+.. ..+......+...+...+|+++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v 232 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVL 232 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEE
Confidence 999997679999999999999999999999999999999999998866532 1111122223344467789999
Q ss_pred EeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhc
Q 020606 247 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 310 (323)
Q Consensus 247 ~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~ 310 (323)
.|+|+|+.+++++|++++|+++||++|+++++++++.+. .++++||+|+||+|+||+++..+
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~--~~~~~vV~v~~d~g~ky~~~~~~ 294 (296)
T PRK11761 233 DVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE--NPNAVIVAIICDRGDRYLSTGVF 294 (296)
T ss_pred EECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH--CCCCeEEEEECCCCcccCChhcc
Confidence 999999999999999999999999999999999998765 35689999999999999998433
No 9
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.6e-63 Score=454.58 Aligned_cols=294 Identities=63% Similarity=1.001 Sum_probs=263.1
Q ss_pred hhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 020606 12 TELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (323)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~ 91 (323)
...+++|||+++++ ....|.+||+|+|++|||||||+|++.+++.++.++|.+.++. +|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChhHHHHHHHHHHc
Confidence 45689999999998 5567889999999999999999999999999999999766664 599999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC-eEeeCCCCCCCchhhhhhchHHHHHHh
Q 020606 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWND 170 (323)
Q Consensus 92 Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (323)
|++|+||||+++++.|++.|+.+||+|+.++++..++++.+.+++++++.++ +++++||+|+.++.+||.++++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998763346778888888877643 568999999998778999999999999
Q ss_pred hCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEEEeCH
Q 020606 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSS 250 (323)
Q Consensus 171 ~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d 250 (323)
+++.||+||+|+|+||+++|++.+|++.+|++|||+|||.+++.+...+...+.+++++.+..+..+..+.+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999999987766566666777888766677777778999999999
Q ss_pred HHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchh
Q 020606 251 EEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 251 ~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
+|+++++++|++++|+++||++|+++++++++.+.. .++++||+++|++|.||+|+.
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~-~~~~~vv~v~~d~G~ky~~~~ 296 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISSGAAVAAALKLAKRP-EPDKLIVVILPSTGERYLSTP 296 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhc-CCCCEEEEEECCCCccccCcc
Confidence 999999999999999999999999999999987653 266899999999999999974
No 10
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2.9e-63 Score=463.21 Aligned_cols=309 Identities=37% Similarity=0.581 Sum_probs=265.6
Q ss_pred HHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 020606 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (323)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~ 87 (323)
...+...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.++|.+.++. +|+++||||||+|+|++
T Consensus 44 ~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~ 122 (423)
T PLN02356 44 RNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLATV 122 (423)
T ss_pred hhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHH
Confidence 34677888999999999998888899999999999999999999999999999988776654 47789999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC-----CCh-hHHH---HHHHHHHHh------------------
Q 020606 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA-----VGF-EGFV---KKGEEILNR------------------ 140 (323)
Q Consensus 88 a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~~~-~~~~---~~a~~~~~~------------------ 140 (323)
|+.+|++|+||||+++++.|++.|+.|||+|+.+++. ..+ ..+. +.+.+++++
T Consensus 123 aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~ 202 (423)
T PLN02356 123 APAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGC 202 (423)
T ss_pred HHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccc
Confidence 9999999999999999999999999999999999641 112 1111 223333332
Q ss_pred --------------CCCeEeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEE
Q 020606 141 --------------TPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYG 206 (323)
Q Consensus 141 --------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vig 206 (323)
.++.+|++||+|+.++.+++..+|+||++|++++||+||+|+||||+++|+++++|+.+|+++||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVig 282 (423)
T PLN02356 203 ISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFL 282 (423)
T ss_pred cccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEE
Confidence 146789999999999777666679999999977899999999999999999999999999999999
Q ss_pred EecCCCcccc-------------CCCC----ccccccccCCCCCCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEee
Q 020606 207 IEPSESAVLN-------------GGQP----GKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVG 269 (323)
Q Consensus 207 v~~~~~~~~~-------------~~~~----~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ 269 (323)
|||.++..+. .+.. .++.++|++.+..|..+....+|+++.|+|+|++++++++++++|+++|
T Consensus 283 Vep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg 362 (423)
T PLN02356 283 IDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVG 362 (423)
T ss_pred EecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEe
Confidence 9999876332 1221 2567899998877777778899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhchhHHhhcc
Q 020606 270 ISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVE 318 (323)
Q Consensus 270 p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~~~~~~~~~ 318 (323)
|++|+++++++++++. ..++++||+|+|+.|.||++++|+++|..+..
T Consensus 363 ~Ssaa~laaa~~la~~-~~~g~~VV~Il~d~G~kyl~~~~~~~w~~~~~ 410 (423)
T PLN02356 363 SSSAMNCVGAVRVAQS-LGPGHTIVTILCDSGMRHLSKFHDPQYLSQHG 410 (423)
T ss_pred ECHHHHHHHHHHHHHH-hCCCCeEEEEECCCCcchhhhhcCHHHHHhcC
Confidence 9999999999998764 23678999999999999999999999998754
No 11
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=8.7e-63 Score=446.81 Aligned_cols=287 Identities=43% Similarity=0.741 Sum_probs=255.0
Q ss_pred HhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 020606 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (323)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~ 90 (323)
|...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.++.++|.+.++. +|+++|+||||+|+|++|++
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHH
Confidence 55678999999999998888899999999999999999999999999999999877764 59999999999999999999
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHh
Q 020606 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND 170 (323)
Q Consensus 91 ~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (323)
+|++|+||||+..++.|++.|+.+||+|+.++.+..++++.+.+++++++. +.+|++||+|+.++..||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987545788888889888876 4568899999999977789999999999
Q ss_pred hCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEEEeCH
Q 020606 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSS 250 (323)
Q Consensus 171 ~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d 250 (323)
++++||+||+|+|+||+++|++.++|+.+|++|||+|||.+++.+.. ..+++.+..+..+....+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97689999999999999999999999999999999999999866532 12222333333445667899999999
Q ss_pred HHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchh
Q 020606 251 EEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 251 ~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
+|+++++++|++++|+++||++|+++++++++++. .+++++|+|+||+|+||+|+.
T Consensus 233 ~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~--~~~~~vv~v~~d~g~ky~~~~ 288 (290)
T TIGR01138 233 RDAENTMRELAVREGIFCGVSSGGAVAAALRLARE--LPDAVVVAIICDRGDRYLSTG 288 (290)
T ss_pred HHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHH--CCCCeEEEEECCCCccccCcc
Confidence 99999999999999999999999999999998764 356899999999999999974
No 12
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-63 Score=449.34 Aligned_cols=297 Identities=24% Similarity=0.317 Sum_probs=264.8
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++.....++...+.+|||+.++.|++.+|++||+|+|++||+||||.||+++.++.+.+++.. ...||++|+||||+
T Consensus 11 ~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQ 87 (347)
T COG1171 11 DILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQ 87 (347)
T ss_pred HHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHH
Confidence 345567899999999999999999999999999999999999999999999999987633222 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
++|++|+++|++++||||.++|..|++.++.|||+|++++.. |+++.+.+++++++. |+.|++||++|+.+ +||+|
T Consensus 88 GvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~--~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGT 163 (347)
T COG1171 88 GVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGT 163 (347)
T ss_pred HHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccH
Confidence 999999999999999999999999999999999999999987 999999999999987 99999999999999 59999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC------ccccccccCCCC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGAGV 232 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~------~~~~~~gl~~~~ 232 (323)
+++||++|++..||+||||+|+||+++|++.++|...|+++||||||++++++. .|+. ..+.++|+++..
T Consensus 164 i~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~ 243 (347)
T COG1171 164 IALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKR 243 (347)
T ss_pred HHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCC
Confidence 999999999655799999999999999999999999999999999999998753 4422 356778888754
Q ss_pred ---CCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchh
Q 020606 233 ---IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 233 ---~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
.++.+.++++|+++.|+|+|+.++++++++++++++||+++++++++++..... .+++++++++ +|||..++++
T Consensus 244 ~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~il-SGgN~d~~~~ 320 (347)
T COG1171 244 PGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVIL-SGGNIDFERL 320 (347)
T ss_pred CCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEe-cCCCCCHHHH
Confidence 367788999999999999999999999999999999999999999999876654 5677777777 8999666643
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=5.1e-62 Score=443.34 Aligned_cols=289 Identities=59% Similarity=0.954 Sum_probs=259.6
Q ss_pred CCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeE
Q 020606 16 GHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKL 95 (323)
Q Consensus 16 ~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~ 95 (323)
++|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.++|...++ ++|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 58999999999988889999999999999999999999999999999875544 45999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCC
Q 020606 96 IIIMPSTYSIERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG 173 (323)
Q Consensus 96 ~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~ 173 (323)
+||||.++++.|+++++.+||+|+.++... ..+++.+.+++++++.++++|++||+||.+++.++.|+++||++|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998762 237788888888777658999999999999973344999999999976
Q ss_pred CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEEEeCHHHH
Q 020606 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEA 253 (323)
Q Consensus 174 ~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~e~ 253 (323)
.||+||+|+|+||+++|++.+|++..|.++||+|||++++.+.......+.+++++.+..+..+...++++++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 89999999999999999999999999999999999999988744444567788888876666677778999999999999
Q ss_pred HHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcc
Q 020606 254 IETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306 (323)
Q Consensus 254 ~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~ 306 (323)
+++++.+++++|+++||++|+++++++++++... +++++|+|+|++|.||+|
T Consensus 240 ~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 240 FAMARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred HHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC-CCCeEEEEECCCccccCC
Confidence 9999999999999999999999999999877643 678999999999999986
No 14
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-63 Score=436.87 Aligned_cols=315 Identities=67% Similarity=1.053 Sum_probs=296.1
Q ss_pred hhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 020606 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (323)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A 85 (323)
.....+...+|+|||+.+++....+.++||+|+|.+||+||.|||.++.++.+|+.+|.+.||+++|++++|||+|.++|
T Consensus 41 ~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA 120 (362)
T KOG1252|consen 41 LILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLA 120 (362)
T ss_pred hhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHH
Confidence 35567889999999999999988788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhH---HHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 86 FIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 86 ~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
++|+..|++|+++||+..+.+|+..++.+||+|++++...+++. +...+.++..+.++.+.++||.||.|+.+||.+
T Consensus 121 ~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~t 200 (362)
T KOG1252|consen 121 YMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYET 200 (362)
T ss_pred HHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccccccc
Confidence 99999999999999999999999999999999999998766666 788888898888999999999999999999999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCcc--ccccccCCCCCCcccccc
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGK--HLIQGIGAGVIPPVLDVA 240 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~ 240 (323)
++.||++|+.+++|.+|.++|||||++|+.+++|+.+|+++|++|+|..+..+....+.+ +.+.|+|.++.|..++..
T Consensus 201 tg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~ 280 (362)
T KOG1252|consen 201 TGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTK 280 (362)
T ss_pred ccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchH
Confidence 999999999889999999999999999999999999999999999999998887777766 889999999999999999
Q ss_pred CcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhchhHHhhccCC
Q 020606 241 MLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 320 (323)
Q Consensus 241 ~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~~~~~~~~~~~ 320 (323)
.+|+.+.+.++|+..++++++.++|++++.|||++++++++++++.+..++-+|++++|+|++|+++.++++|.++..+|
T Consensus 281 ~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 281 LVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999887666666666589999999999999999998776
No 15
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=5.5e-62 Score=469.30 Aligned_cols=310 Identities=41% Similarity=0.680 Sum_probs=270.2
Q ss_pred HHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
+.+...+++|||+++++|+..+|++||+|+|++|||||||+|++.+++.++.++|.+.+| ++|+++|+||||+|+|++|
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a 81 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVA 81 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHH
Confidence 346677899999999999988888999999999999999999999999999999987776 4599999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhH---HHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHH
Q 020606 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (323)
+.+|++|+||||+++++.|+..++.+||+|+.++....+++ ..+.+.+++++.++.+|++||+|+.++.+||.++++
T Consensus 82 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 161 (454)
T TIGR01137 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGP 161 (454)
T ss_pred HHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHH
Confidence 99999999999999999999999999999999986422332 355677777664467888999999998679999999
Q ss_pred HHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCC-----CCccccccccCCCCCCcccccc
Q 020606 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG-----QPGKHLIQGIGAGVIPPVLDVA 240 (323)
Q Consensus 166 Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~-----~~~~~~~~gl~~~~~~~~~~~~ 240 (323)
||++|+++.||+||+|+|+|||++|++.++++..|.++||||||++++..... ...++.+.+++.+..|..+..+
T Consensus 162 Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (454)
T TIGR01137 162 EILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRK 241 (454)
T ss_pred HHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCch
Confidence 99999976899999999999999999999999999999999999988633221 1123467788776556666778
Q ss_pred CcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhchhHHhhccC
Q 020606 241 MLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVEN 319 (323)
Q Consensus 241 ~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~~~~~~~~~~ 319 (323)
.+|+++.|+|+|++++++++++++|+++||+||+++++++++++....+++++|+++|++|.+|++++|+++|..+.+.
T Consensus 242 ~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~~ 320 (454)
T TIGR01137 242 VVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNGF 320 (454)
T ss_pred hCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcCC
Confidence 8999999999999999999999999999999999999999988752245789999999999999999999999887654
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=8.2e-61 Score=459.76 Aligned_cols=302 Identities=25% Similarity=0.300 Sum_probs=260.1
Q ss_pred HHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
.+|...+.+|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.++.. ..+||++|+||||+++|++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 47788899999999999999999999999999999999999999999987663322 23499999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHH
Q 020606 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (323)
+.+|++|+||||+.++..|++.++.|||+|+.++.. ++++.+.+.+++++. +++|++||+|+.+++ ||+|+++||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~--~d~a~~~A~~la~e~-g~~~v~pfdd~~via-GqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES--FPDALAHALKLAEEE-GLTFVPPFDDPDVIA-GQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeeCCCCChHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999865 899999999998876 789999999999995 9999999999
Q ss_pred HhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCC---CCcc
Q 020606 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPV 236 (323)
Q Consensus 169 ~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~ 236 (323)
+|+++.||+||+|+|+||+++|++.++|...|++|||||||++++.+. .+++ ..+.++|++... .++.
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~ 260 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFE 260 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHH
Confidence 999667999999999999999999999999999999999999998653 2332 235667776543 2344
Q ss_pred ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchh---hchhH
Q 020606 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA---LFESI 313 (323)
Q Consensus 237 ~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~---~~~~~ 313 (323)
+..+++|+++.|+|+|+.++++++++++|+++||++|++++|++++.+....+++++|+|+ +||+-.++++ +.+..
T Consensus 261 ~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~Il-sGgNid~~~l~~i~~r~l 339 (521)
T PRK12483 261 LCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAID-SGANVNFDRLRHVAERAE 339 (521)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEe-CCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999999999999999999999999999998766555678888887 7888655532 33444
Q ss_pred HhhccC
Q 020606 314 RHEVEN 319 (323)
Q Consensus 314 ~~~~~~ 319 (323)
..+.|.
T Consensus 340 ~~~~r~ 345 (521)
T PRK12483 340 LGEQRE 345 (521)
T ss_pred HhcCCE
Confidence 444443
No 17
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=7.6e-61 Score=453.03 Aligned_cols=308 Identities=24% Similarity=0.319 Sum_probs=265.3
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....+++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+.+. ..+||++|+||||+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~ 86 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence 34456789999999999999999998899999999999999999999999999988776543 23499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+++ ||+|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~--~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g~~t 162 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRD--YDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-GQGT 162 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCccCChHHHH-HHHH
Confidence 999999999999999999999999999999999999999875 899999999998875 889999999999996 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----ccccccccCCCC-
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGV- 232 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~----~~~~~-----~~~~~~gl~~~~- 232 (323)
+++||++|+ +.||+||+|+|+||+++|++.++|+..|+++||||||.+++++ ..+++ ..+.++|++.+.
T Consensus 163 ~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~ 241 (406)
T PRK06382 163 IGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYP 241 (406)
T ss_pred HHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCc
Confidence 999999999 4899999999999999999999999999999999999999865 23332 245677887753
Q ss_pred --CCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCC---CCcch
Q 020606 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE---RYLST 307 (323)
Q Consensus 233 --~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~---~~~~~ 307 (323)
.++.+..+++|+++.|+|+|++++++.+++++|+++||++|+++++++.. + ...++++||+++ +||+ .+++.
T Consensus 242 ~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~-~-~~~~~~~Vv~i~-sGGn~d~~~~~~ 318 (406)
T PRK06382 242 GDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEG-K-VDVKGKKVAIVV-SGGNINPLLMSK 318 (406)
T ss_pred cHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhc-c-ccCCCCEEEEEe-CCCCCCHHHHHH
Confidence 23334568899999999999999999999999999999999988877542 2 123567888888 6788 45667
Q ss_pred hhchhHHhhccCCCC
Q 020606 308 ALFESIRHEVENMPI 322 (323)
Q Consensus 308 ~~~~~~~~~~~~~~~ 322 (323)
++.++|..+.|.+++
T Consensus 319 ~~~~~~~~~~~~~rl 333 (406)
T PRK06382 319 IIYKELENLGQLVRI 333 (406)
T ss_pred HHHHHHHhcCCEEEE
Confidence 788888888876643
No 18
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=5.6e-61 Score=451.40 Aligned_cols=308 Identities=22% Similarity=0.302 Sum_probs=262.2
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....+++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+.+..+.+.+. .++||++|+||||+
T Consensus 6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~ 81 (403)
T PRK08526 6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQ 81 (403)
T ss_pred HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHH
Confidence 45667789999999999999999999889999999999999999999999999998876543 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
++|++|+++|++|+||||++++..|++.++.|||+|+.++.+ ++++++.+.+++++. +++|++||+|+.++ +||+|
T Consensus 82 avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~~--~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gt 157 (403)
T PRK08526 82 GVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDN--YDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGT 157 (403)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHH
Confidence 999999999999999999999999999999999999999865 899999999988875 78999999999988 49999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (323)
+++||++|+ +.||+||+|+|+||+++|++.++|+.+|+++||||||++++.+. .+++ ..+.++|++.+..
T Consensus 158 ia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~ 236 (403)
T PRK08526 158 IALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA 236 (403)
T ss_pred HHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCC
Confidence 999999999 47999999999999999999999999999999999999998652 3332 3456677776421
Q ss_pred -C--ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcch---
Q 020606 234 -P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST--- 307 (323)
Q Consensus 234 -~--~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~--- 307 (323)
+ +....+++|+++.|+|+|+.++++++++++|+++||++|++++++++.... ..++++||+++ +||+...++
T Consensus 237 ~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~-~~~~~~Vv~il-sGGnid~~~~~~ 314 (403)
T PRK08526 237 SPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKID-LKKGKKIGVVL-SGGNIDVQMLNI 314 (403)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccc-cccCCeEEEEE-CCCCCCHHHHHH
Confidence 2 233457899999999999999999999999999999999999998752211 13567888888 779876553
Q ss_pred hhchhHHhhccCCC
Q 020606 308 ALFESIRHEVENMP 321 (323)
Q Consensus 308 ~~~~~~~~~~~~~~ 321 (323)
++...+..+.|.+.
T Consensus 315 i~~~~l~~~~r~~~ 328 (403)
T PRK08526 315 IIEKGLIKSYRKMK 328 (403)
T ss_pred HHHHHHHhcCCEEE
Confidence 34455555555543
No 19
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.7e-60 Score=440.95 Aligned_cols=293 Identities=23% Similarity=0.303 Sum_probs=250.9
Q ss_pred hhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 020606 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLA 85 (323)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A 85 (323)
...+++++++++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|
T Consensus 17 ~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA 91 (351)
T PRK06352 17 DKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAA 91 (351)
T ss_pred CCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHH
Confidence 33456899999999999999988888899999999999999999999999999999883 5699999999999999
Q ss_pred HHHHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchH
Q 020606 86 FIAASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG 164 (323)
Q Consensus 86 ~~a~~~Gi~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (323)
++|+.+|++|+||||++ .+..|+.+++.+||+|+.++.+ ++++.+.+++++++. ++++++ +.|+.+++ ||.|++
T Consensus 92 ~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~t~~ 166 (351)
T PRK06352 92 AYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--FDEALKSVRELAETE-AVTLVN-SVNPYRLE-GQKTAA 166 (351)
T ss_pred HHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-Cccccc-CCCcccee-eHHHHH
Confidence 99999999999999998 5899999999999999999876 888889999888774 666666 45999996 999999
Q ss_pred HHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCC-----cEEEEEecCCCccccCCCCc---cccccccCCCC-CCc
Q 020606 165 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-----IKVYGIEPSESAVLNGGQPG---KHLIQGIGAGV-IPP 235 (323)
Q Consensus 165 ~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~-----~~vigv~~~~~~~~~~~~~~---~~~~~gl~~~~-~~~ 235 (323)
+||++|++..||+||+|+|+||+++|++++||+..|+ ++||+|||++++++..+++. .+...++..+. ..+
T Consensus 167 ~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~ 246 (351)
T PRK06352 167 FEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASW 246 (351)
T ss_pred HHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcH
Confidence 9999999767999999999999999999999998876 89999999999766554442 23334444332 112
Q ss_pred cccccCcC----eEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCCCCCcchh
Q 020606 236 VLDVAMLD----EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 236 ~~~~~~~~----~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg~~~~~~~ 308 (323)
....+.+| .++.|+|+|++++++++++++|+++||++|+++++++++++.+. .++++||+++|++|++|+++.
T Consensus 247 ~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 247 GLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 22223333 48999999999999999999999999999999999999887544 456889999999999999876
No 20
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.1e-59 Score=454.32 Aligned_cols=289 Identities=21% Similarity=0.289 Sum_probs=253.9
Q ss_pred HHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 020606 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (323)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~ 89 (323)
++...+.+|||+++++|++.+|++||+|+|++|||||||+|++.+.+..+.++. . ..+||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~---~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-L---DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-C---CCCEEEECCCHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999999999875432 2 234999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHH
Q 020606 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (323)
Q Consensus 90 ~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (323)
++|++|+||||+.++..|++.++.|||+|+.++.+ ++++.+.+++++++. +++|++||+|+.++. ||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~~--~dea~~~A~~la~e~-g~~fi~pfddp~via-GqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDS--YDEAQAYAKQRALEE-GRTFIPPFDHPDVIA-GQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEECCCCChHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999866 899999999988875 789999999999995 99999999999
Q ss_pred hhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC---Cccc
Q 020606 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPVL 237 (323)
Q Consensus 170 q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~ 237 (323)
|++..+|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .+++ ..+.++|+..... ++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999997663 3433 2355677765432 2344
Q ss_pred cccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcch
Q 020606 238 DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 238 ~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~ 307 (323)
..+++|+++.|+|+|+.++++++++++|+++||++|+++||++++.+....++++||+|+ +||+..+++
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vl-sGgNid~~~ 402 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAIT-SGANMNFDR 402 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEe-cCCCCCHHH
Confidence 578999999999999999999999999999999999999999998765556788888888 778765553
No 21
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=9.2e-60 Score=445.08 Aligned_cols=307 Identities=23% Similarity=0.316 Sum_probs=259.9
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+... ..+||++|+||||+
T Consensus 2 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~ 77 (409)
T TIGR02079 2 DIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQ 77 (409)
T ss_pred hHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 35567789999999999999999998889999999999999999999999999987533221 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE---EEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhh
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV---YLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (323)
++|++|+++|++|+||||+.+++.|++.++.|||+| +.++. .++++++.+.+++++. +++|++||+||.+++ |
T Consensus 78 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~-g 153 (409)
T TIGR02079 78 GFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGD--TFDQCAAAAREHVEDH-GGTFIPPFDDPRIIE-G 153 (409)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCHhHhh-h
Confidence 999999999999999999999999999999999974 44444 4899999999998875 789999999999995 9
Q ss_pred hhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCC
Q 020606 160 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGA 230 (323)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~ 230 (323)
|+|+++||++|++..||+||+|+|+||+++|++.++|+.+|+++||||||++++++. .+++ ..+.++|++.
T Consensus 154 ~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v 233 (409)
T TIGR02079 154 QGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAV 233 (409)
T ss_pred hHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccC
Confidence 999999999999656999999999999999999999999999999999999998653 3433 2356677776
Q ss_pred CCCC---ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcch
Q 020606 231 GVIP---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 231 ~~~~---~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~ 307 (323)
...+ +.+...++|+++.|+|+|+.++++++++++|+++||++|+++++++++.+. .++++||+++ +||+.+++.
T Consensus 234 ~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~--~~~~~Vv~il-sGgn~d~~~ 310 (409)
T TIGR02079 234 KRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE--IKGKTVVCVV-SGGNNDIER 310 (409)
T ss_pred CCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEE-CCCCCCHHH
Confidence 5432 223467899999999999999999999999999999999999999886543 4678899988 678876553
Q ss_pred ---hhchhHHhhccCC
Q 020606 308 ---ALFESIRHEVENM 320 (323)
Q Consensus 308 ---~~~~~~~~~~~~~ 320 (323)
++...+..+.|.+
T Consensus 311 ~~~~~~~~l~~~~r~~ 326 (409)
T TIGR02079 311 TEEIRERSLLYEGLKH 326 (409)
T ss_pred HHHHHHHHHHhcCCEE
Confidence 3445555555544
No 22
>PLN02970 serine racemase
Probab=100.00 E-value=1.8e-59 Score=432.23 Aligned_cols=294 Identities=21% Similarity=0.242 Sum_probs=250.8
Q ss_pred hhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 020606 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (323)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a 83 (323)
+....++|...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|
T Consensus 14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~a 89 (328)
T PLN02970 14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAA 89 (328)
T ss_pred HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHH
Confidence 4456678889999999999999998888999999999999999999999999999875543 345999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhch
Q 020606 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (323)
Q Consensus 84 ~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (323)
+|++|+++|++|+||||+++++.|++.|+.+||+|+.++.+ ++.+.+.+++++++ ++++|++||+|+.+++ ||+|+
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~la~~-~g~~~~~~~~n~~~~~-g~~t~ 165 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPT--VESREAVAARVQQE-TGAVLIHPYNDGRVIS-GQGTI 165 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCC--HHHHHHHHHHHHHh-cCCEEeCCCCCcchhh-ehHHH
Confidence 99999999999999999999999999999999999999976 78888888888877 4899999999999996 99999
Q ss_pred HHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCC--
Q 020606 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV-- 232 (323)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~-- 232 (323)
++||++|++ .||+||+|+|+||+++|++.+||+.+|+++||+|||.+++.+. .+++ .++.+++++.+.
T Consensus 166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~ 244 (328)
T PLN02970 166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGD 244 (328)
T ss_pred HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCH
Confidence 999999995 7999999999999999999999999999999999999987542 2322 234556665531
Q ss_pred CCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhh-CCC-CC-CCEEEEEecCCCCCCcch
Q 020606 233 IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAK-RPE-NA-GKLIVVIFPSAGERYLST 307 (323)
Q Consensus 233 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~-~~~-~~-~~~vv~v~~~gg~~~~~~ 307 (323)
.++....+.+|+++.|+|+|++++++++++++|+++||++|++++++++... .+. .+ +++||+++ +||+..++.
T Consensus 245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~-~Ggn~~~~~ 321 (328)
T PLN02970 245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVL-SGGNVDLGV 321 (328)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEE-CCCCCCHHH
Confidence 1233446788999999999999999999999999999999999999876432 222 23 36777777 778865543
No 23
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-59 Score=433.45 Aligned_cols=308 Identities=17% Similarity=0.183 Sum_probs=259.0
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++...+++|...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++.++|.+. ++||++|+||||+
T Consensus 9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~ 85 (338)
T PRK06608 9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQ 85 (338)
T ss_pred HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHH
Confidence 4556778899999999999999999989999999999999999999999999999999988542 4699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+++|++|+||||+++++.|+++++.+||+|+.++. .+++.+.+++ .++ +++||++||+|+.+++ ||++
T Consensus 86 alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~-g~~t 159 (338)
T PRK06608 86 AVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIA-GAGT 159 (338)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhc-cHHH
Confidence 99999999999999999999999999999999999999964 3667677766 444 4889999999999995 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC------ccccccccCCCC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP------GKHLIQGIGAGV 232 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~----~~~~~------~~~~~~gl~~~~ 232 (323)
+++||++|++.+||+||+|+|+||+++|++.++|+.+|.++||||||.+++.+ ..+++ ..+..++++.+.
T Consensus 160 ~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~ 239 (338)
T PRK06608 160 LCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLS 239 (338)
T ss_pred HHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCC
Confidence 99999999976899999999999999999999999999999999999998643 23322 235667777643
Q ss_pred CCcc-cc-ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCC--CCCcchh
Q 020606 233 IPPV-LD-VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAG--ERYLSTA 308 (323)
Q Consensus 233 ~~~~-~~-~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg--~~~~~~~ 308 (323)
.... +. .+.+|+++.|+|+|++++++++++++|+++||++|+++++++++++.. .++++||+++|+|+ .+|+++.
T Consensus 240 ~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~-~~~~~Vv~v~tgg~~d~~~~~~~ 318 (338)
T PRK06608 240 VSARTFEYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ-SKPQKLLVILSGGNIDPILYNEL 318 (338)
T ss_pred CCHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh-cCCCeEEEEeCCCccCHHHHHHH
Confidence 3211 21 134799999999999999999999999999999999999999876643 35688999996643 4456666
Q ss_pred hchhHHhhccCC
Q 020606 309 LFESIRHEVENM 320 (323)
Q Consensus 309 ~~~~~~~~~~~~ 320 (323)
+.++|...-..|
T Consensus 319 ~~~~~~~~~~~~ 330 (338)
T PRK06608 319 WKEDYLTIPPKI 330 (338)
T ss_pred HHHhhhcCCCCc
Confidence 666766544443
No 24
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=4.1e-59 Score=433.45 Aligned_cols=300 Identities=24% Similarity=0.292 Sum_probs=255.9
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
|+.+..+++++.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+
T Consensus 14 p~~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~ 88 (352)
T PRK06721 14 PVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSA 88 (352)
T ss_pred CCCCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHH
Confidence 44445567899999999999999988888899999999999999999999999999999883 5699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhh
Q 020606 83 GLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (323)
|+|++|+.+|++|+||||++. ++.|+++++.+||+|+.++.+ ++++.+.+++++++. ++++++ +.|+.+++ ||.
T Consensus 89 alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~ 163 (352)
T PRK06721 89 SAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGN--FDDALKAVRNIAAEE-PITLVN-SVNPYRIE-GQK 163 (352)
T ss_pred HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhC-Cceecc-CCCchhhh-hhh
Confidence 999999999999999999974 789999999999999999865 888888999888875 667765 56888886 999
Q ss_pred chHHHHHHhhCCCccEEEEecCCchhHHHHHHH----HHhhC-CCcEEEEEecCCCccccCCCC---ccccccccCCCCC
Q 020606 162 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRF----LKEKN-PNIKVYGIEPSESAVLNGGQP---GKHLIQGIGAGVI 233 (323)
Q Consensus 162 t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~----~~~~~-~~~~vigv~~~~~~~~~~~~~---~~~~~~gl~~~~~ 233 (323)
|+++||++|++..||+||+|+|+||+++|++.+ +|..+ |.++||+|||++++.+..+.. ..+.+++++.+.
T Consensus 164 t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~- 242 (352)
T PRK06721 164 TAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN- 242 (352)
T ss_pred hHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCC-
Confidence 999999999976799999999999999986544 45554 899999999999887655443 234455665542
Q ss_pred Cccc------cccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCCCCCcc
Q 020606 234 PPVL------DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLS 306 (323)
Q Consensus 234 ~~~~------~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg~~~~~ 306 (323)
|..+ ....+|+++.|+|+|++++++++++++|+++||++|+++++++++++.+. .++++||+++|++|.||++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~ 322 (352)
T PRK06721 243 PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPD 322 (352)
T ss_pred CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchH
Confidence 2211 23578899999999999999999999999999999999999999887654 4578999999999999999
Q ss_pred hhhchhH
Q 020606 307 TALFESI 313 (323)
Q Consensus 307 ~~~~~~~ 313 (323)
..+.+.|
T Consensus 323 ~~~~~~~ 329 (352)
T PRK06721 323 IAISSNT 329 (352)
T ss_pred HHhhhcc
Confidence 8775555
No 25
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=2.8e-59 Score=430.62 Aligned_cols=295 Identities=26% Similarity=0.335 Sum_probs=251.1
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
.+....+++...+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+... ..+|+++|+||||+
T Consensus 13 ~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~ 88 (333)
T PRK08638 13 DIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQ 88 (333)
T ss_pred HHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHH
Confidence 35567789999999999999999998888999999999999999999999999998765332 24599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++.+ ++++.+.+++++++. +++|++||+||.+++ ||.+
T Consensus 89 alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~-g~~t 164 (333)
T PRK08638 89 GVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDN--FNDTIAKVEEIVEEE-GRTFIPPYDDPKVIA-GQGT 164 (333)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEEcCcCCCcchhc-cccH
Confidence 999999999999999999999999999999999999999865 889999999988876 789999999999996 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCCc-----cccccccCCCCC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQPG-----KHLIQGIGAGVI 233 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~----~~~~~~-----~~~~~gl~~~~~ 233 (323)
+++||++|+ +++|+||+|+|+||+++|++.+||+.+|+++||+|||.+++.+ ..+++. .+..++++.. .
T Consensus 165 ~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~ 242 (333)
T PRK08638 165 IGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVS-R 242 (333)
T ss_pred HHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCC-C
Confidence 999999999 5799999999999999999999999999999999999998653 234332 2334455443 2
Q ss_pred Ccccc----ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchh
Q 020606 234 PPVLD----VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 234 ~~~~~----~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
|..+. .+.+|+++.|+|+|++++++++++++|+++||++|++++++.........+++++|+|+ +||+.+++++
T Consensus 243 p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~-~Ggn~~~~~~ 320 (333)
T PRK08638 243 PGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAII-SGGNVDLSRV 320 (333)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEE-CCCCCCHHHH
Confidence 33332 47899999999999999999999999999999988888777643222224677888888 5799887754
No 26
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-59 Score=445.86 Aligned_cols=304 Identities=25% Similarity=0.361 Sum_probs=259.5
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....++|...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+
T Consensus 8 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 83 (404)
T PRK08198 8 DIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQ 83 (404)
T ss_pred HHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHH
Confidence 34457789999999999999999998889999999999999999999999999999875543 45699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
++|++|+.+|++|+||||++++..|+++++.|||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+++ ||+|
T Consensus 84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~t 159 (404)
T PRK08198 84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDV--YDEALAKAQELAEET-GATFVHPFDDPDVIA-GQGT 159 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCCccHHH-HHHH
Confidence 999999999999999999999999999999999999999865 899999999998875 899999999999995 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCC-
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV- 232 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~- 232 (323)
+++||++|+ +++|+||+|+|+||+++|++.+||+.+|+++||||||.+++++. .+++ ..+.+++++.+.
T Consensus 160 ~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~ 238 (404)
T PRK08198 160 IGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRP 238 (404)
T ss_pred HHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCc
Confidence 999999999 47999999999999999999999999999999999999998653 2333 234456665432
Q ss_pred --CCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchh--
Q 020606 233 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA-- 308 (323)
Q Consensus 233 --~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~-- 308 (323)
.++.+..+++|+++.|+|+|+.++++++++++|+++||++|+++++++++.+ ..+++++|+++ +||+..++.+
T Consensus 239 ~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~--~~~~~~vv~vl-~ggn~~~~~l~~ 315 (404)
T PRK08198 239 GDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKL--DVKGKKVVAVL-SGGNIDVLLLSR 315 (404)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchh--hcCCCeEEEEE-CCCCCCHHHHHH
Confidence 2333456889999999999999999999999999999999999999988652 24678899998 4677655532
Q ss_pred -hchhHHhhcc
Q 020606 309 -LFESIRHEVE 318 (323)
Q Consensus 309 -~~~~~~~~~~ 318 (323)
+...+..+.|
T Consensus 316 ii~~gl~~~gr 326 (404)
T PRK08198 316 VIERGLVAAGR 326 (404)
T ss_pred HHHhhhhhcCC
Confidence 3344444444
No 27
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.9e-59 Score=430.40 Aligned_cols=293 Identities=22% Similarity=0.307 Sum_probs=251.9
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....+++...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+
T Consensus 10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 85 (321)
T PRK07048 10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQ 85 (321)
T ss_pred HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHH
Confidence 45567789999999999999999988888999999999999999999999999998875432 35699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+.+|++|++|||+++++.|+++++.+||+|+.++.. ++++.+.+++++++. +++|++||+|+.+++ ||+|
T Consensus 86 alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~~-g~~t 161 (321)
T PRK07048 86 AIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLTLIPPYDHPHVIA-GQGT 161 (321)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEECCCCCcchhh-ccch
Confidence 999999999999999999999999999999999999999865 778888888888875 799999999999985 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccc----cCCCC-----ccccccccCCCCC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP-----GKHLIQGIGAGVI 233 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~----~~~~~-----~~~~~~gl~~~~~ 233 (323)
+++||++|++ +||+||+|+|+||+++|++.++|+..|+++||||||++++++ ..++. ..+.++++..+..
T Consensus 162 ~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~ 240 (321)
T PRK07048 162 AAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHL 240 (321)
T ss_pred HHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCc
Confidence 9999999994 899999999999999999999999999999999999998743 23332 1233445443211
Q ss_pred ---CccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcch
Q 020606 234 ---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 234 ---~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~ 307 (323)
.+....+++|+++.|+|+|+++++++|++++|+++||++|+++++++++.+. .+++++|+|+ +||+.+++.
T Consensus 241 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~--~~~~~vv~i~-tGGn~~~~~ 314 (321)
T PRK07048 241 GNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP--LKGKRVGVII-SGGNVDLAR 314 (321)
T ss_pred cHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh--cCCCeEEEEe-CCCCCCHHH
Confidence 1233457889999999999999999999999999999999999999986543 4678899888 578876653
No 28
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2e-59 Score=444.85 Aligned_cols=307 Identities=23% Similarity=0.325 Sum_probs=259.1
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....+++...+++|||+++++|++..|++||+|+|++|||||||+|++.+++.++.+... .++||++|+||||+
T Consensus 11 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~ 86 (420)
T PRK08639 11 DIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQ 86 (420)
T ss_pred HHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 44567789999999999999999998889999999999999999999999999988532211 34699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE---EeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhh
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY---LADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (323)
++|++|+++|++|+||||+.+++.|++.++.|||+|+ ..+. .++++.+.+.+++++. +++|++||+|+.+++ |
T Consensus 87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~--~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~~-G 162 (420)
T PRK08639 87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGD--TFDDSAAAAQEYAEET-GATFIPPFDDPDVIA-G 162 (420)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCc--CHHHHHHHHHHHHHhc-CCcccCCCCChhHhc-c
Confidence 9999999999999999999999999999999999743 3343 4899999999998875 799999999999995 9
Q ss_pred hhchHHHHHHhhCCC--ccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----cccccccc
Q 020606 160 YETTGPEIWNDSGGK--VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGI 228 (323)
Q Consensus 160 ~~t~~~Ei~~q~~~~--~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl 228 (323)
|+|+++||++|++.. ||+||+|+|+||+++|++.++|+..|+++||||||++++.+. .+.+ ..+.++|+
T Consensus 163 ~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi 242 (420)
T PRK08639 163 QGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGA 242 (420)
T ss_pred hhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeeccc
Confidence 999999999999655 999999999999999999999999999999999999998753 2332 24566787
Q ss_pred CCCCC---CccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCc
Q 020606 229 GAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYL 305 (323)
Q Consensus 229 ~~~~~---~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~ 305 (323)
+.+.. ++.+..+++|+++.|+|+|+.++++++++++|+++||++|+++++++++.+. .+++++|+++ +||+.+.
T Consensus 243 ~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~~~~~vv~v~-sGgn~d~ 319 (420)
T PRK08639 243 AVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--IKGKTVVCVI-SGGNNDI 319 (420)
T ss_pred ccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEe-CCCCCCH
Confidence 76543 2334567899999999999999999999999999999999999999886532 4678899888 7888765
Q ss_pred ch---hhchhHHhhccCC
Q 020606 306 ST---ALFESIRHEVENM 320 (323)
Q Consensus 306 ~~---~~~~~~~~~~~~~ 320 (323)
+. ++.+....+.|.+
T Consensus 320 ~~~~~~~~~~l~~~~r~~ 337 (420)
T PRK08639 320 ERMPEIKERSLIYEGLKH 337 (420)
T ss_pred HHHHHHHHHHHHhcCCEE
Confidence 53 3445555555544
No 29
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=4.8e-59 Score=428.77 Aligned_cols=300 Identities=22% Similarity=0.298 Sum_probs=253.6
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++.....+|...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.++|. ..+||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~ 80 (322)
T PRK07476 5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGR 80 (322)
T ss_pred HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHH
Confidence 45677889999999999999999998889999999999999999999999999999998875 23499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+.+|++|+||||+.+++.|++.|+.+||+|+.++.. ++++.+.+.+++++. +++|++|++||.+++ ||++
T Consensus 81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t 156 (322)
T PRK07476 81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS--QDDAQAEVERLVREE-GLTMVPPFDDPRIIA-GQGT 156 (322)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcceee-chhH
Confidence 999999999999999999999999999999999999999875 788888898888775 789999999999996 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCC-
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV- 232 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~- 232 (323)
+++||++|++ ++|+||+|+|+||+++|++.+||...|+++||+|||++++.+. .+.+ ..+.+++++.+.
T Consensus 157 ~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~ 235 (322)
T PRK07476 157 IGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIG 235 (322)
T ss_pred HHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCcccccccccc
Confidence 9999999994 7999999999999999999999999999999999999876432 2322 234455553221
Q ss_pred ----CCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchh
Q 020606 233 ----IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 233 ----~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
.+..+....+|+++.|+|+|++++++++++++|+++||+++++++++++. .....+++||+++ +||+...+
T Consensus 236 ~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~--~~~~~~~~Vvvi~-tGg~~~~~-- 310 (322)
T PRK07476 236 LDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAG--KIAARDGPIVVVV-SGANIDME-- 310 (322)
T ss_pred CCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhC--CcccCCCcEEEEE-CCCCCCHH--
Confidence 12334557889999999999999999999999999999999999998832 1112337888888 56664333
Q ss_pred hchhHHhh
Q 020606 309 LFESIRHE 316 (323)
Q Consensus 309 ~~~~~~~~ 316 (323)
.+.+++..
T Consensus 311 ~~~~~~~~ 318 (322)
T PRK07476 311 LHRRIING 318 (322)
T ss_pred HHHHHHhh
Confidence 44555543
No 30
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=5.4e-59 Score=447.61 Aligned_cols=291 Identities=25% Similarity=0.330 Sum_probs=255.5
Q ss_pred HHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 020606 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (323)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~ 87 (323)
..+|...+.+|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.++.. ..+||++|+||||+++|++
T Consensus 8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a 83 (499)
T TIGR01124 8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS 83 (499)
T ss_pred HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence 347888999999999999999999999999999999999999999999988643322 3459999999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHH
Q 020606 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (323)
Q Consensus 88 a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (323)
|+++|++|+||||+.++..|++.++.+||+|+.++.+ ++++.+.+.+++++. +++|++||+||.++. ||+|+|+||
T Consensus 84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~--~d~a~~~a~~la~~~-g~~~i~p~~~~~~i~-G~gtig~EI 159 (499)
T TIGR01124 84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGAN--FDDAKAKAIELSQEK-GLTFIHPFDDPLVIA-GQGTLALEI 159 (499)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCcC--HHHHHHHHHHHHHhc-CCEeeCCCCChHHHH-hhHHHHHHH
Confidence 9999999999999999999999999999999999865 899999999998875 789999999999995 999999999
Q ss_pred HHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC---Cc
Q 020606 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PP 235 (323)
Q Consensus 168 ~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~ 235 (323)
++|++.++|+||+|+|+|||++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++.... ++
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~ 239 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETF 239 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHH
Confidence 9999668999999999999999999999999999999999999997653 3332 2355677765532 34
Q ss_pred cccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcch
Q 020606 236 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 236 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~ 307 (323)
.+..+++|+++.|+|+|+.++++++++++|+++||++|+++++++++.+....+++++|+|+ +||+-.+++
T Consensus 240 ~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~-sG~n~~~~~ 310 (499)
T TIGR01124 240 RLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAIL-SGANMNFHR 310 (499)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEE-CCCCCCHHH
Confidence 45668999999999999999999999999999999999999999998776555678888888 667755553
No 31
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=7.3e-59 Score=438.17 Aligned_cols=290 Identities=23% Similarity=0.230 Sum_probs=252.1
Q ss_pred HHhhhhCCCCeeecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 10 DVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
.+++++++|||+++++|++.+| .+||+|+|++|||||||||++.+++.++.+.|. ++|+++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 4899999999999999988888 599999999999999999999999999999884 5699999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHH
Q 020606 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (323)
+++|++|+||||+++++.|+++++.+||+|+.++++ ++++.+.+++.+++. ++++++++.||.+++ |+.|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~~np~~ie-G~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTLKEPYRIE-GKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCCCCccchh-cHHHHHHHHH
Confidence 999999999999999999999999999999999876 888888888887775 799999999999997 9999999999
Q ss_pred HhhCCC-ccEEEEecCCchhHHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC-------ccccccccC
Q 020606 169 NDSGGK-VDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIG 229 (323)
Q Consensus 169 ~q~~~~-~d~vvvp~G~Gg~~aGi~~~~~~~-------~~~~~vigv~~~~~~~~~----~~~~-------~~~~~~gl~ 229 (323)
+|++++ ||+||+|+|+||+++|++++|+++ .+.++||+|||++++++. .+.. ..+.++++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~ 302 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR 302 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence 999754 999999999999999999999987 388999999999987642 2221 123445554
Q ss_pred CCCCCcc--c---cccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCCCC
Q 020606 230 AGVIPPV--L---DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGER 303 (323)
Q Consensus 230 ~~~~~~~--~---~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg~~ 303 (323)
.+..... . ..+..+.++.|+|+|+++++++|++++|+++||++|+++++++++.+.+. .++++||+++|++|.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k 382 (394)
T PRK08197 303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLK 382 (394)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcC
Confidence 4321111 1 12456778999999999999999999999999999999999999988765 3578999999999999
Q ss_pred Ccchh
Q 020606 304 YLSTA 308 (323)
Q Consensus 304 ~~~~~ 308 (323)
|.++.
T Consensus 383 ~~~~~ 387 (394)
T PRK08197 383 YPDTV 387 (394)
T ss_pred chhhh
Confidence 98864
No 32
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1e-58 Score=426.51 Aligned_cols=298 Identities=20% Similarity=0.250 Sum_probs=254.1
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....++|...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+++... ..|+++|+||||+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~ 83 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQ 83 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHH
Confidence 3455678899999999999999999888899999999999999999999999999998876433 3499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+++|++|+||||++.++.|+++++.+||+|+.++.+ ++++.+.+.+++++. ++||++++ |+.+++ ||.|
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~-G~~t 158 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGED--FQAAREEAARLAAER-GLHMVPSF-HPDLVR-GVAT 158 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCCC-CChHHh-ccch
Confidence 999999999999999999999999999999999999999765 889988998888875 78999998 677785 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (323)
+++||++|++ ++|+||+|+|+||+++|++.++++.+|++|||+|||.+++.+. .++. ..+.+++++....
T Consensus 159 ~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~ 237 (322)
T PRK06110 159 YALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTP 237 (322)
T ss_pred HHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCc
Confidence 9999999995 7999999999999999999999999999999999999987652 3332 2345566654321
Q ss_pred -C--ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhc
Q 020606 234 -P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 310 (323)
Q Consensus 234 -~--~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~ 310 (323)
+ +.+..+++|+++.|+|+|++++++++++++|+++||++++++++++++.+. .++++||+|+ +||+.+.+ .+
T Consensus 238 ~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~--~~~~~Vv~i~-tGgn~d~~--~~ 312 (322)
T PRK06110 238 DPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERER--LAGKRVGLVL-SGGNIDRA--VF 312 (322)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhh--hCCCcEEEEE-CCCCCCHH--HH
Confidence 1 122357899999999999999999999999999999999999999986543 3567888888 66986655 33
Q ss_pred hhHH
Q 020606 311 ESIR 314 (323)
Q Consensus 311 ~~~~ 314 (323)
.++.
T Consensus 313 ~~~~ 316 (322)
T PRK06110 313 ARVL 316 (322)
T ss_pred HHHH
Confidence 4444
No 33
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-58 Score=425.08 Aligned_cols=290 Identities=25% Similarity=0.309 Sum_probs=250.4
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....+++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+... ..+||++|+||||+
T Consensus 6 ~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~ 81 (317)
T PRK06815 6 AILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQ 81 (317)
T ss_pred HHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHH
Confidence 55667889999999999999999988888999999999999999999999999987543321 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+++|++|+||||+.+++.|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++|++|+.+++ ||++
T Consensus 82 alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t 157 (317)
T PRK06815 82 GVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQVIA-GQGT 157 (317)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhhhc-chhH
Confidence 999999999999999999999999999999999999999976 788888888888775 789999999999885 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (323)
+++||++|++ .||+||+|+|+||+++|++.++++..|+++||||||++++.+. .+.+ ..+.+++++.+..
T Consensus 158 ~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~ 236 (317)
T PRK06815 158 IGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVE 236 (317)
T ss_pred HHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCc
Confidence 9999999995 6999999999999999999999999999999999999987653 2332 2245566644322
Q ss_pred C----ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCC
Q 020606 234 P----PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGER 303 (323)
Q Consensus 234 ~----~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~ 303 (323)
+ ..+..+++|+++.|+|+|+++++++|++++|+++||++|+++++++++.+. .++++||+|+|+++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~--~~~~~vv~i~tG~~~~ 308 (317)
T PRK06815 237 PGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR--YQGKKVAVVLCGKNIV 308 (317)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh--cCCCcEEEEECCCCCC
Confidence 2 234467899999999999999999999999999999999999999987654 3678899999665543
No 34
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=3.7e-58 Score=421.26 Aligned_cols=290 Identities=22% Similarity=0.274 Sum_probs=248.2
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....++|...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+... ..+|+++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 55677889999999999999999988888999999999999999999999999998764321 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+++|++|+||||+.+++.|++.++.|||+|+.++.. ++++.+.+++++++. +++|++||+||.+++ ||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRS--QDDAQEEVERLVADR-GLTMLPPFDHPDIVA-GQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeeCCCCChHHHh-hHHH
Confidence 999999999999999999999999999999999999999976 888888888888775 889999999999995 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccC--CC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIG--AG 231 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~--~~ 231 (323)
+++||++|+ +++|+||+|+|+||+++|+++++|+.+|.++||||||++++.+. .+++ .++.+++++ .+
T Consensus 157 ~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~ 235 (317)
T TIGR02991 157 LGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIG 235 (317)
T ss_pred HHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccC
Confidence 999999999 47899999999999999999999999999999999999876553 2322 234555553 22
Q ss_pred ---CCCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCc
Q 020606 232 ---VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYL 305 (323)
Q Consensus 232 ---~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~ 305 (323)
..++.+..+.+|+++.|+|+|+++++++|++++|+++||+++++++++++... .+++++|+|+ +||+...
T Consensus 236 ~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~~---~~~~~vvvvl-tG~n~~~ 308 (317)
T TIGR02991 236 LDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKI---KNPGPCAVIV-SGRNIDM 308 (317)
T ss_pred CCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCcc---ccCCcEEEEe-CCCCCCH
Confidence 12344566889999999999999999999999999999999999999874211 2356788887 6677433
No 35
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=3e-58 Score=444.26 Aligned_cols=289 Identities=25% Similarity=0.332 Sum_probs=253.6
Q ss_pred HHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
.+|...+.+|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.++.. ..+||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999988753321 34699999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHH
Q 020606 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (323)
+++|++|+||||++++..|++.++.+||+|+.++.+ ++++.+.+.+++++. +++|++||+||.+++ |++|+++||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~--~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i~-G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDS--FDEAYAHAIELAEEE-GLTFIHPFDDPDVIA-GQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcHHHH-hHHHHHHHHH
Confidence 999999999999999999999999999999999865 899999999998875 899999999999995 9999999999
Q ss_pred HhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC---Ccc
Q 020606 169 NDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPV 236 (323)
Q Consensus 169 ~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~ 236 (323)
+|++..||+||+|+|+||+++|++.++|...|++|||||||++++++. .+++ ..+.+++++.... ++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~ 243 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFR 243 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHH
Confidence 999656999999999999999999999999999999999999998653 3333 2345567665432 334
Q ss_pred ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcc
Q 020606 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306 (323)
Q Consensus 237 ~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~ 306 (323)
+..+++|+++.|+|+|+.++++++++++|+++||++|++++|++++.+....+++++|+|+ +||+-.++
T Consensus 244 ~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~-sG~n~~~~ 312 (504)
T PRK09224 244 LCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAIL-SGANMNFD 312 (504)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEE-CCCCCCHH
Confidence 5578999999999999999999999999999999999999999998776555678888888 66775444
No 36
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=3e-58 Score=428.58 Aligned_cols=290 Identities=24% Similarity=0.294 Sum_probs=250.1
Q ss_pred HHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 020606 8 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (323)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~ 87 (323)
.+++++++++|||+++++|+...|.+||+|+|++|||||||||++.+++.+++++|. .+||++|+||||+|+|++
T Consensus 22 ~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~ 96 (353)
T PRK07409 22 TPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAY 96 (353)
T ss_pred cCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 345899999999999999988788899999999999999999999999999998883 569999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHH
Q 020606 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 88 a~~~Gi~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
|+.+|++|+||||++ .++.|++.++.+||+|+.+++. ++++.+.++++.++. +++++++ .||.+++ ||.|+++|
T Consensus 97 a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~~-g~~t~~~E 171 (353)
T PRK07409 97 AARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGN--FDDALEIVRELAEKY-PVTLVNS-VNPYRIE-GQKTAAFE 171 (353)
T ss_pred HHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CceecCC-CCchhhh-hHHHHHHH
Confidence 999999999999998 5889999999999999999876 899999999888776 5777765 5899996 99999999
Q ss_pred HHHhhCCCccEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCccccCCCCc---cccccccCCCCCCccc
Q 020606 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLNGGQPG---KHLIQGIGAGVIPPVL 237 (323)
Q Consensus 167 i~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~------~~~vigv~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~ 237 (323)
|++|++..||+||+|+|+||+++|++.+|++..+ .++||+|||.+++++..+.+. .+..++++.+. |..+
T Consensus 172 I~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~ 250 (353)
T PRK07409 172 IVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASW 250 (353)
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCH
Confidence 9999976799999999999999999999998643 489999999998776544432 33445555442 2222
Q ss_pred ------cccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCCCCCcchh
Q 020606 238 ------DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 238 ------~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg~~~~~~~ 308 (323)
..+..++++.|+|+|++++++++++++|+++||++|+++++++++.+++. .++++||+++|++|++|.++.
T Consensus 251 ~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 251 DKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 22345678999999999999999999999999999999999999887643 457899999988899999965
No 37
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=5e-58 Score=420.25 Aligned_cols=285 Identities=23% Similarity=0.262 Sum_probs=242.4
Q ss_pred CCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEE
Q 020606 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLI 96 (323)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~ 96 (323)
+|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.++|. .+ .++||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999988888999999999999999999999999999999884 22 3569999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCC--C
Q 020606 97 IIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG--K 174 (323)
Q Consensus 97 vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--~ 174 (323)
||||+.+++.|++.|+.+||+|+.++.. .++++.+.+++++++.++++|++|++||.+++ ||.++++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 9999999999999999999999999864 25667777777777654799999999999996 999999999999975 5
Q ss_pred ccEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCCCcc---ccccC
Q 020606 175 VDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVIPPV---LDVAM 241 (323)
Q Consensus 175 ~d~vvvp~G~Gg~~aGi~~~~~~~~-~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~~---~~~~~ 241 (323)
||+||+|+|+||+++|++.+|++.+ |+++||+|||++++.+. .+++ ..+.++|++.+..+.. ...+.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 99999999999987653 2322 2356678877655432 23456
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHH-----hhCCC-CCCCEEEEEecCCCCC-Ccc
Q 020606 242 LDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRV-----AKRPE-NAGKLIVVIFPSAGER-YLS 306 (323)
Q Consensus 242 ~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~-----~~~~~-~~~~~vv~v~~~gg~~-~~~ 306 (323)
.|+++.|+|+|+++++++|++++|+++||++|++++++++. .+++. .++++||+++| ||+. .++
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~ilt-g~n~~~~~ 307 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVC-GGSNITLE 307 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEEC-CCCCCCHH
Confidence 88999999999999999999999999999999999999853 22222 46788888884 4553 444
No 38
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-58 Score=438.37 Aligned_cols=292 Identities=21% Similarity=0.279 Sum_probs=254.1
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....+++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.++.. ...||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 84 (403)
T PRK07334 9 DIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQ 84 (403)
T ss_pred HHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHH
Confidence 45567789999999999999999988888999999999999999999999999998754332 23499999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+++|++|+||||+++++.|+++++.+||+|+.++.+ ++++++.+++++++. +++|++||+|+.+++ ||+|
T Consensus 85 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~--~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~-g~~t 160 (403)
T PRK07334 85 GVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGET--LDEARAHARELAEEE-GLTFVHPYDDPAVIA-GQGT 160 (403)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEecCCCCCHHHHH-hHHH
Confidence 999999999999999999999999999999999999999865 889999999998775 889999999999995 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCC---CccccccccCCC---C
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQ---PGKHLIQGIGAG---V 232 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~---~~~~~~~gl~~~---~ 232 (323)
+++||++|+ +.||+||+|+|+||+++|++.++|+.+|+++||+|||++++++. .+. ..++.+++++.+ .
T Consensus 161 ~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 239 (403)
T PRK07334 161 VALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQ 239 (403)
T ss_pred HHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccH
Confidence 999999999 47999999999999999999999999999999999999987653 211 124667888754 2
Q ss_pred CCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcc
Q 020606 233 IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306 (323)
Q Consensus 233 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~ 306 (323)
.++.+....+|+++.|+|+|++++++++++++|+++||++|+++++++++.+. .++++||+++|+ |+...+
T Consensus 240 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~--~~~~~vv~i~~g-gn~d~~ 310 (403)
T PRK07334 240 LTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER--FRGRKVGLVLSG-GNIDTR 310 (403)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh--cCCCeEEEEECC-CCCCHH
Confidence 34455678899999999999999999999999999999999999999876543 467789999955 654333
No 39
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=4.2e-58 Score=435.27 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=253.2
Q ss_pred HHhhhhCCCCeeecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 10 DVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
++++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|.+.|. ++|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 5889999999999999998888 599999999999999999999999999999884 5699999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHH
Q 020606 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIW 168 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (323)
+++|++|+||||+++++.|+.+++.+||+|+.++++ ++++.+.+++++++.++++|++++.||+.++ |++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ie-G~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNINLRPYYAE-GSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCCCCccccc-chHHHHHHHH
Confidence 999999999999999999999999999999999976 8899999999887765789999888999996 9999999999
Q ss_pred HhhCCC-ccEEEEecCCchhHHHHHHHHHhh-------CCCcEEEEEecCCCcccc----CCCC------ccccccccCC
Q 020606 169 NDSGGK-VDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGA 230 (323)
Q Consensus 169 ~q~~~~-~d~vvvp~G~Gg~~aGi~~~~~~~-------~~~~~vigv~~~~~~~~~----~~~~------~~~~~~gl~~ 230 (323)
+|++++ ||+||+|+|+||+++|++.+|+++ .+.+|||+|||++++++. .+.. ..+.++++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999755 999999999999999999999987 578999999999976542 2221 2344555543
Q ss_pred CCCCc------cccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCCCC
Q 020606 231 GVIPP------VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGER 303 (323)
Q Consensus 231 ~~~~~------~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg~~ 303 (323)
+. |. ....+..+.++.|+|+|++++++++++.+|+++||++|+++++++++.+.+. .++++||+++|++|+|
T Consensus 314 ~~-p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~k 392 (421)
T PRK07591 314 GN-PADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLK 392 (421)
T ss_pred CC-CCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccC
Confidence 32 21 1224566789999999999999999999999999999999999999988765 4678999999888999
Q ss_pred Ccchh
Q 020606 304 YLSTA 308 (323)
Q Consensus 304 ~~~~~ 308 (323)
+.+.+
T Consensus 393 d~~~~ 397 (421)
T PRK07591 393 TLEAV 397 (421)
T ss_pred CHHHH
Confidence 88754
No 40
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=6.4e-58 Score=420.58 Aligned_cols=279 Identities=24% Similarity=0.303 Sum_probs=243.1
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....++|...+.+|||++++.+ +||+|+|++|||||||+|++.+++.++.+.|. .+.||++|+||||+
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~ 94 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQ 94 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHH
Confidence 445677899999999999998875 49999999999999999999999999999885 23599999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++.+ |+++.+.+++++++. +++|++||+|+.+++ ||+|
T Consensus 95 alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~--~~~a~~~a~~la~~~-g~~~v~~~~np~~i~-G~~T 170 (349)
T PRK08813 95 GVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNS--YDEAYAFARELADQN-GYRFLSAFDDPDVIA-GQGT 170 (349)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCccCChHHHH-HHHH
Confidence 999999999999999999999999999999999999999876 899999999998875 899999999999996 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc---CCCC-----ccccccccCCCC--
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQP-----GKHLIQGIGAGV-- 232 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~---~~~~-----~~~~~~gl~~~~-- 232 (323)
+++||++| .||+||+|+|+||+++|++.++|+ +.++||||||++++.+. .+.+ ..+.++|++...
T Consensus 171 ig~EI~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~ 245 (349)
T PRK08813 171 VGIELAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPG 245 (349)
T ss_pred HHHHHHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcc
Confidence 99999987 379999999999999999999996 56899999999987542 1221 246677877542
Q ss_pred -CCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcch
Q 020606 233 -IPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 233 -~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~ 307 (323)
.++.+..+.+|+++.|+|+|+.+++++|++++|+++||++|+++++++++ .++++++|+ +|||..+++
T Consensus 246 ~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~vl-sGgN~d~~~ 314 (349)
T PRK08813 246 FLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCAVV-SGGNIDATV 314 (349)
T ss_pred hhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEEEE-CCCCCCHHH
Confidence 23445667899999999999999999999999999999999999998762 456788888 888865553
No 41
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-58 Score=411.35 Aligned_cols=290 Identities=23% Similarity=0.282 Sum_probs=259.9
Q ss_pred hHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
...++...+-.|||.+.-.|++..|.++|+|+|++||+||||.||+.|++...-++++ +.+|+++|+||||.|+|+
T Consensus 56 ~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 56 AHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAY 131 (457)
T ss_pred hhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHH
Confidence 4456778888999999989999999999999999999999999999999998777664 566999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHH
Q 020606 87 IAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 87 ~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
+|+++|+|++||||..+|..|++.++.+||+|++.+.+ |+++...|.++++++ ++.|++|||||..|+ |++|++.|
T Consensus 132 aa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~--~deAk~~a~~lAke~-gl~yI~pfDhP~I~a-GqgTig~E 207 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGED--WDEAKAFAKRLAKEN-GLTYIPPFDHPDIWA-GQGTIGLE 207 (457)
T ss_pred HHHhcCCceEEEecCCChHHHHHHHhccCCEEEEeccc--HHHHHHHHHHHHHhc-CceecCCCCCchhhc-CcchHHHH
Confidence 99999999999999999999999999999999999887 999999999999987 999999999999995 99999999
Q ss_pred HHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC---C
Q 020606 167 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---P 234 (323)
Q Consensus 167 i~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~ 234 (323)
|++|++..+++|+||||+||+++||+.|+|+.+|+++|||||++++.+|. .+++ .++.++|++.+.+ +
T Consensus 208 Il~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~t 287 (457)
T KOG1250|consen 208 ILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENT 287 (457)
T ss_pred HHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHH
Confidence 99999655669999999999999999999999999999999999998753 4554 3567888888754 3
Q ss_pred ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcc
Q 020606 235 PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306 (323)
Q Consensus 235 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~ 306 (323)
+.+.+.++|+++.|+|+|+.+++.++.+.+..++||++|+++++.+.. +....+++++|.++ +|++-..+
T Consensus 288 f~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~il-sG~n~~~~ 357 (457)
T KOG1250|consen 288 FELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSIL-SGGNIDFD 357 (457)
T ss_pred HHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeec-ccCCCCcc
Confidence 456788999999999999999999999999999999999999999987 55557888888888 66654443
No 42
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.8e-58 Score=434.64 Aligned_cols=289 Identities=25% Similarity=0.336 Sum_probs=248.7
Q ss_pred CCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 020606 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLII 97 (323)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~v 97 (323)
|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.+++. ..+||++|+||||+|+|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999999899999999999999999999999999999988775 24599999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCCCccE
Q 020606 98 IMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 177 (323)
Q Consensus 98 v~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~ 177 (323)
|||+.++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.++. ||+|+++||++|++ +||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGDD--YDEAYAFATSLAEEE-GRVFVHPFDDEFVMA-GQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCChhhhh-hhHHHHHHHHHhCC-CCCE
Confidence 999999999999999999999999865 899999999998875 889999999999985 99999999999994 7999
Q ss_pred EEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC---CccccccCcCeE
Q 020606 178 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPVLDVAMLDEV 245 (323)
Q Consensus 178 vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~ 245 (323)
||+|+|+||+++|++.++|+..|++|||||||++++++. .+++ ..+.++|++.+.. ++.+..+++|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999997653 3333 2355677765431 233456789999
Q ss_pred EEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcc---hhhchhHHhhcc
Q 020606 246 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS---TALFESIRHEVE 318 (323)
Q Consensus 246 ~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~---~~~~~~~~~~~~ 318 (323)
+.|+|+|+.+++++|++++|+++||++|++++++++... ..+++++|+++ +||+.+.+ .++...+..+.|
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~--~~~~~~vv~i~-sGGn~d~d~l~~vi~~gl~~~gr 304 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKV--DVKGKKIAVVL-SGGNIDLNLLNKIIEKGLVKSGR 304 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCcc--ccCCCeEEEEe-CCCCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999986422 23567899888 56885544 334444455554
No 43
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=6e-58 Score=419.45 Aligned_cols=289 Identities=26% Similarity=0.348 Sum_probs=254.0
Q ss_pred chhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 020606 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTG 81 (323)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g 81 (323)
.++++..++|...+++|||+++++|+..+|.+||+|+|++|||||||||++.+++.++++.|. ..+||++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 467888999999999999999999998888999999999999999999999999999887662 2459999999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhh
Q 020606 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (323)
Q Consensus 82 ~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (323)
+|+|++|+++|++|++|+|.+.++.|+++|+.+||+|+.++.+ ++++.+.+++++++. +++|++|++|+.+++ ||.
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~~~-g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDVIA-GQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchhc-cHH
Confidence 9999999999999999999999999999999999999999976 889999999998885 899999999999985 999
Q ss_pred chHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCC-----ccccccccCCCC
Q 020606 162 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV 232 (323)
Q Consensus 162 t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~ 232 (323)
++++||++|++ .||+||+|+|+|||++|++.++|+.+|.+|||+|+|.+++.+. .+.. ..+...+++.+.
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 232 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKR 232 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCC
Confidence 99999999996 5999999999999999999999999999999999999887642 2222 234455665542
Q ss_pred C---CccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCC
Q 020606 233 I---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE 302 (323)
Q Consensus 233 ~---~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~ 302 (323)
. ++.+..++.|+++.|+|+|+++++++|++++|+++||++|+++++++++.+.. ++++||+++ +||+
T Consensus 233 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~i~-tGG~ 302 (304)
T cd01562 233 PGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVVVL-SGGN 302 (304)
T ss_pred chHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEEEe-cCCC
Confidence 1 22345578899999999999999999999999999999999999999987654 577888888 5555
No 44
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.6e-57 Score=429.92 Aligned_cols=300 Identities=21% Similarity=0.210 Sum_probs=249.5
Q ss_pred hhCCCCeeecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 020606 14 LIGHTPMVYLNNVVDGCV--------ARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (323)
Q Consensus 14 ~~~~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~---------- 69 (323)
++++|||++++.|++.+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.++.
T Consensus 72 ~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~ 151 (441)
T PRK02991 72 GIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEF 151 (441)
T ss_pred CccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhh
Confidence 389999999999987665 699999999999 999999999999875 45777665553
Q ss_pred ------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 020606 70 ------TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (323)
Q Consensus 70 ------~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (323)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++.+ ++++.+.+++++++.++
T Consensus 152 ~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~--~~~a~~~A~~la~~~~~ 229 (441)
T PRK02991 152 RQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGD--YGVAVEEGRKAAESDPN 229 (441)
T ss_pred hhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhcCC
Confidence 3699999999999999999999999999999999999999999999999999976 89999999998887656
Q ss_pred eEeeCCCCCCCchhhhhhchHHHHHHhhCC--------CccEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 020606 144 GYILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAV 214 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vvvp~G~Gg~~aGi~~~~~~~-~~~~~vigv~~~~~~~ 214 (323)
++|+++++++..++ ||+|+++||++|+++ .||+||+|+|+||+++|++.++|+. .|+++||+|||+++++
T Consensus 230 ~~~~~~~~~~~~ia-G~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~ 308 (441)
T PRK02991 230 CYFIDDENSRTLFL-GYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 308 (441)
T ss_pred eEeCCCCCchhHHH-hHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChH
Confidence 89999988888885 999999999999952 2679999999999999999999997 6889999999999875
Q ss_pred c----cCCCC-----------ccccccccCCCCCC---ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHH
Q 020606 215 L----NGGQP-----------GKHLIQGIGAGVIP---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAA 276 (323)
Q Consensus 215 ~----~~~~~-----------~~~~~~gl~~~~~~---~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 276 (323)
+ ..++. ..+.++|++.+..+ +.+..+.+|+++.|+|+|+.+++++|++++|+++||++|+++
T Consensus 309 ~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~Aaal 388 (441)
T PRK02991 309 MLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGM 388 (441)
T ss_pred HHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHH
Confidence 4 23321 23566788776422 334457899999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC----------CCCEEEEEecCCCCCCcchhhchhHHhhcc
Q 020606 277 AAAIRVAKRPEN----------AGKLIVVIFPSAGERYLSTALFESIRHEVE 318 (323)
Q Consensus 277 aa~~~~~~~~~~----------~~~~vv~v~~~gg~~~~~~~~~~~~~~~~~ 318 (323)
++++++.+.... .+++||++.|+|..+..+ ..++|..+.+
T Consensus 389 Aa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~--~~~~~~~~~~ 438 (441)
T PRK02991 389 AGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEE--EMEQYLAKGR 438 (441)
T ss_pred HHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHH--HHHHHHHhhh
Confidence 999876543221 356777777555554444 4466666554
No 45
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=2.3e-57 Score=418.82 Aligned_cols=286 Identities=24% Similarity=0.276 Sum_probs=249.2
Q ss_pred HHHhhhhCCCCeeecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 020606 9 KDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (323)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~ 87 (323)
++|++++++|||+++++|++..| .+||+|+|++|||||||+|++.+++.++.++| .++|+++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG-----VKAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcC-----CCEEEEeCCCHHHHHHHHH
Confidence 57999999999999999988776 79999999999999999999999999999887 4569999999999999999
Q ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHH
Q 020606 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEI 167 (323)
Q Consensus 88 a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (323)
|+.+|++|++|||+++++.|+++++.+||+|+.++.+ ++++.+.+++++++. ++|++|++|+.+++ ||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~--~~~~~~~~n~~~~~-g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGN--FDDALRLVRELAEEN--WIYLSNSLNPYRLE-GQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECCc--HHHHHHHHHHHHHhc--CeeccCCCCcceec-chhhhHHHH
Confidence 9999999999999999999999999999999999875 888888898888774 78999999999996 999999999
Q ss_pred HHhhCC-CccEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCC-------ccccccccC
Q 020606 168 WNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIG 229 (323)
Q Consensus 168 ~~q~~~-~~d~vvvp~G~Gg~~aGi~~~~~~~~------~~~~vigv~~~~~~~~~----~~~~-------~~~~~~gl~ 229 (323)
++|+++ .||+||+|+|+||+++|++.+++... |+++||+|||.+++.+. .+.. ..+.+++++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999963 69999999999999999999999875 57999999999986442 2211 234566766
Q ss_pred CCCCC-c----cccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCCCC
Q 020606 230 AGVIP-P----VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGER 303 (323)
Q Consensus 230 ~~~~~-~----~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg~~ 303 (323)
.+..+ + .+..++.++++.|+|+|++++++++++++|+++||++|+++++++++.+.+. .++++||+++|++|.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~ 323 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLK 323 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccC
Confidence 54311 1 1223566899999999999999999999999999999999999999887654 4578899999999986
Q ss_pred C
Q 020606 304 Y 304 (323)
Q Consensus 304 ~ 304 (323)
.
T Consensus 324 ~ 324 (324)
T cd01563 324 D 324 (324)
T ss_pred C
Confidence 3
No 46
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=3.2e-57 Score=414.10 Aligned_cols=287 Identities=23% Similarity=0.318 Sum_probs=243.9
Q ss_pred hhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
++....++|...+++|||++++.++.. +.+||+|+|++|||||||+|++.+++.++.+ + .++||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~ 81 (310)
T PRK08246 9 DVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGL 81 (310)
T ss_pred HHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHH
Confidence 455678899999999999999999876 7899999999999999999999999988765 2 35699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
|+|++|+++|++|+||||+.+++.|+.+++.+||+|+.++.+ ++++.+.+.+++++. +++|++||+|+.+++ ||+|
T Consensus 82 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~-g~~t 157 (310)
T PRK08246 82 AVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAE--YADALEAAQAFAAET-GALLCHAYDQPEVLA-GAGT 157 (310)
T ss_pred HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeCCCCCChhhhc-chHH
Confidence 999999999999999999999999999999999999999875 888888888888775 899999999999996 9999
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcccc----CCCCccc-----cccccCCCCC
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPGKH-----LIQGIGAGVI 233 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~----~~~~~~~-----~~~gl~~~~~ 233 (323)
+++||++|+ +.||+||+|+|+||+++|++.+|+. .++||+|||++++.+. .+++... ..++++.+..
T Consensus 158 ~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~ 233 (310)
T PRK08246 158 LGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRV 233 (310)
T ss_pred HHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCc
Confidence 999999998 4799999999999999999999964 4899999999997653 3443222 2334454433
Q ss_pred ---CccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcc
Q 020606 234 ---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306 (323)
Q Consensus 234 ---~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~ 306 (323)
++.+..+..|+++.|+|+|++++++++++++|+++||++|++++++++.... ..++++||+++ +||+...+
T Consensus 234 ~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~-~~~~~~vv~i~-~g~n~d~~ 307 (310)
T PRK08246 234 GEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYV-PAPGERVAVVL-CGANTDPA 307 (310)
T ss_pred cHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCcc-ccCCCeEEEEE-CCCCCChh
Confidence 2335567899999999999999999999999999999999999998754322 13567888888 66775544
No 47
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=7.8e-57 Score=417.40 Aligned_cols=277 Identities=23% Similarity=0.255 Sum_probs=242.7
Q ss_pred HhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 020606 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (323)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~ 90 (323)
++++++.|||+++. .+||+|+|++|||||||||++.+++.++.+.|. ++|+++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 68999999999873 389999999999999999999999999999884 569999999999999999999
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHh
Q 020606 91 RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND 170 (323)
Q Consensus 91 ~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (323)
+|++|+||||+++++.|+.+++.+||+|+.++++ ++++.+.+++++++. +++|++++.||.+++ ||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~~e-G~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYFLE-GTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchhhc-cchhHHHHHHHH
Confidence 9999999999999999999999999999999876 777778888887774 778889999999997 999999999999
Q ss_pred hCCCccEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCccccC-CCCccccccccCCCCCCc-----ccc
Q 020606 171 SGGKVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLNG-GQPGKHLIQGIGAGVIPP-----VLD 238 (323)
Q Consensus 171 ~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~------~~~~vigv~~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~ 238 (323)
++ .||+||+|+|+||+++|++++|+++. +.+|+|+|||+++.++.. .....+.+++++.+..+. .+.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l 280 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRAL 280 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHH
Confidence 95 89999999999999999999999874 568999999999866542 233456777887764322 123
Q ss_pred ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCC-CCCEEEEEecCCCCCCc
Q 020606 239 VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAGERYL 305 (323)
Q Consensus 239 ~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~-~~~~vv~v~~~gg~~~~ 305 (323)
.+..+.++.|+|+|++++++++++ +|+++||++|+++++++++.+++.. ++++||+++|++|.|++
T Consensus 281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 281 EESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 455677899999999999999985 8999999999999999999988764 77899999999998864
No 48
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.2e-56 Score=423.49 Aligned_cols=289 Identities=25% Similarity=0.257 Sum_probs=249.1
Q ss_pred HHHhhhhCCCCeeecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 020606 9 KDVTELIGHTPMVYLNNVVDGCVA-RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (323)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~ 87 (323)
+.+++++++|||+++++|++.+|. +||+|+|++|||||||||++.+++.++++.|. ++|+++|+||||+|+|++
T Consensus 59 ~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~ 133 (397)
T PRK06260 59 KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAY 133 (397)
T ss_pred CcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 368899999999999999888886 99999999999999999999999999999884 569999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHH
Q 020606 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 88 a~~~Gi~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
|+++|++|+||||++ .++.|+.+++.+||+|+.++++ ++++.+.+++++++. ++|+++++ ||.+++ ||.|+++|
T Consensus 134 aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-g~y~~~~~-np~~~~-G~~t~a~E 208 (397)
T PRK06260 134 AARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDGN--FDDALDMVVELAKEG-KIYLLNSI-NPFRLE-GQKTIGFE 208 (397)
T ss_pred HHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECCc--HHHHHHHHHHHHhhC-CEEeecCC-Cchhhc-chhhHHHH
Confidence 999999999999997 7899999999999999999876 899999999988875 78888887 899996 99999999
Q ss_pred HHHhhCC-CccEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCCC-------cccccccc
Q 020606 167 IWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQP-------GKHLIQGI 228 (323)
Q Consensus 167 i~~q~~~-~~d~vvvp~G~Gg~~aGi~~~~~~~~------~~~~vigv~~~~~~~~~----~~~~-------~~~~~~gl 228 (323)
|++|+++ .||+||+|+|+||+++|++.+|+++. +.+|||+||+++++++. .+.. ..+.+.++
T Consensus 209 i~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i 288 (397)
T PRK06260 209 IADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAI 288 (397)
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeee
Confidence 9999976 69999999999999999999999876 34799999999987542 2221 12344454
Q ss_pred CCCCCCcc------ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCC
Q 020606 229 GAGVIPPV------LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAG 301 (323)
Q Consensus 229 ~~~~~~~~------~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg 301 (323)
..+. |.. ...+..+.++.|+|+|+++++++|++++|+++||++|+++++++++.+.+. .++++||+++|++|
T Consensus 289 ~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~g 367 (397)
T PRK06260 289 RIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHL 367 (397)
T ss_pred EeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Confidence 4432 211 123455679999999999999999999999999999999999999988765 46789999999999
Q ss_pred CCCcchh
Q 020606 302 ERYLSTA 308 (323)
Q Consensus 302 ~~~~~~~ 308 (323)
.|+.+.+
T Consensus 368 lK~~~~~ 374 (397)
T PRK06260 368 LKDPDAA 374 (397)
T ss_pred cCchHHH
Confidence 9887644
No 49
>PLN02569 threonine synthase
Probab=100.00 E-value=2.1e-56 Score=426.81 Aligned_cols=292 Identities=18% Similarity=0.165 Sum_probs=250.0
Q ss_pred HHhhhhCCCCeeecccccCC-CC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 020606 10 DVTELIGHTPMVYLNNVVDG-CV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87 (323)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~-~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~ 87 (323)
.+++++++|||+++++|++. +| .+||+|+|++|||||||||++.+.++.+.+.|........|+++|+||||.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 48999999999999999887 77 58999999999999999999999999998876432212469999999999999999
Q ss_pred HHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHH
Q 020606 88 AASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 166 (323)
Q Consensus 88 a~~~Gi~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (323)
|+++|++|+||||++ .+..|+.+++.+||+|+.++++ ++++++.+++++++. ++|+++++ ||.+++ ||+|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~--~d~a~~~a~e~~~~~-~~~~~n~~-Np~~ie-G~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTD--FDGCMRLIREVTAEL-PIYLANSL-NSLRLE-GQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEecCCC-CcchhH-hHHHHHHH
Confidence 999999999999997 7889999999999999999986 999999999988775 68899887 999997 99999999
Q ss_pred HHHhhCCC-ccEEEEecCCchhHHHHHHHHHhhC------CCcEEEEEecCCCcccc----CCC-------Ccccccccc
Q 020606 167 IWNDSGGK-VDAFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQ-------PGKHLIQGI 228 (323)
Q Consensus 167 i~~q~~~~-~d~vvvp~G~Gg~~aGi~~~~~~~~------~~~~vigv~~~~~~~~~----~~~-------~~~~~~~gl 228 (323)
|++|++++ ||+||+|+|+||+++|++++|+++. +.+|||+||+++++++. .+. ..++.++++
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi 360 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAI 360 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhh
Confidence 99999765 9999999999999999999999863 45799999999986553 222 134566777
Q ss_pred CCCCCCcccc------ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCC
Q 020606 229 GAGVIPPVLD------VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAG 301 (323)
Q Consensus 229 ~~~~~~~~~~------~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg 301 (323)
+.+. |.... .+.-+.++.|+|+|+++++++ ++++|+++||++|++++++.++.+++. .++++||+++|++|
T Consensus 361 ~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~G 438 (484)
T PLN02569 361 QIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHG 438 (484)
T ss_pred ccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCc
Confidence 7652 43321 122334699999999999999 889999999999999999999988765 46789999999999
Q ss_pred CCCcchh
Q 020606 302 ERYLSTA 308 (323)
Q Consensus 302 ~~~~~~~ 308 (323)
.||.+..
T Consensus 439 lK~~~~~ 445 (484)
T PLN02569 439 LKFTQSK 445 (484)
T ss_pred ccChhHH
Confidence 9998743
No 50
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.8e-56 Score=416.69 Aligned_cols=268 Identities=20% Similarity=0.253 Sum_probs=232.9
Q ss_pred hCCCCeeecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 020606 15 IGHTPMVYLNNVVDGCV--------ARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (323)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~----------- 69 (323)
+++|||+++++|++.+| .+||+|+|++|| |||||||++.+++.. +++.|.+.|+.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999987654 799999999999 999999999998864 77888877765
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020606 70 -----TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (323)
Q Consensus 70 -----~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (323)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.+||+|+.++.+ ++++.+.+++++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~--~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETD--YSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHHCCCe
Confidence 3799999999999999999999999999999999999999999999999999875 899999999998876578
Q ss_pred EeeCCCCCCCchhhhhhchHHHHHHhhCC---C-----ccEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCccc
Q 020606 145 YILGQFENPANPEIHYETTGPEIWNDSGG---K-----VDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVL 215 (323)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~-----~d~vvvp~G~Gg~~aGi~~~~~~~-~~~~~vigv~~~~~~~~ 215 (323)
+|+++++++..+ +||+|+++||++|+++ + ||+||+|+|+||+++|++++||+. .|+++||+|||++++.+
T Consensus 208 ~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 899997666666 5999999999999952 3 558999999999999999999997 78999999999998754
Q ss_pred ----cCCCC-----------ccccccccCCCCC---CccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHH
Q 020606 216 ----NGGQP-----------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAA 277 (323)
Q Consensus 216 ----~~~~~-----------~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~a 277 (323)
..+.. ..+.++|++++.. ++.+..+.+|+++.|+|+|+.+++++|++++|+++||++|++++
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lA 366 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFT 366 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHH
Confidence 22211 2356777777642 22334578999999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 020606 278 AAIRVAKR 285 (323)
Q Consensus 278 a~~~~~~~ 285 (323)
+++++.++
T Consensus 367 Al~~~~~~ 374 (404)
T cd06447 367 GPAQVLSE 374 (404)
T ss_pred HHHHHHHh
Confidence 99998764
No 51
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=6.5e-56 Score=408.11 Aligned_cols=279 Identities=22% Similarity=0.292 Sum_probs=235.4
Q ss_pred hhhCCCCeeecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 020606 13 ELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASR 91 (323)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~ 91 (323)
..+++|||+++++|++.+| .+||+|+|++|||||||+|++.+++.++.++|. ++|+++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHc
Confidence 4589999999999998888 699999999999999999999999999999883 6699999999999999999999
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCC-CC-CchhhhhhchHHHHHH
Q 020606 92 GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFE-NP-ANPEIHYETTGPEIWN 169 (323)
Q Consensus 92 Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~~~Ei~~ 169 (323)
|++|+||||...+..|+++++.+||+|+.++.+ ++++.+.+++++++. ++|++++++ |+ .+++ ||.++++||++
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~-G~~t~a~Ei~~ 161 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVDIE-AYSAIAYEIYE 161 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchHhh-hHHHHHHHHHH
Confidence 999999999999999999999999999999876 888888898888774 788888885 76 5675 99999999999
Q ss_pred hhCCCccEEEEecCCchhHHHHHHHHHhh------CCCcEEEEEecCCCcccc----CCCCc------ccccc-ccCCCC
Q 020606 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEK------NPNIKVYGIEPSESAVLN----GGQPG------KHLIQ-GIGAGV 232 (323)
Q Consensus 170 q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~------~~~~~vigv~~~~~~~~~----~~~~~------~~~~~-gl~~~~ 232 (323)
|++..||+||+|+|+||+++|++.+|++. .|.++||+|+|.+++++. .+... .+..+ .++.+.
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 241 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL 241 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence 99767999999999999999999999998 799999999999886442 22111 01111 111111
Q ss_pred C-----C----ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCC
Q 020606 233 I-----P----PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE 302 (323)
Q Consensus 233 ~-----~----~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~ 302 (323)
. . ..+..++.++.+.|+|+|+++++++|++++|+++||++|+++++++++++++.. +++||+++ +||.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~-tGg~ 318 (319)
T PRK06381 242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVI-TGRR 318 (319)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEe-cCCC
Confidence 0 0 112345667899999999999999999999999999999999999999887644 37888888 5554
No 52
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.5e-55 Score=406.02 Aligned_cols=266 Identities=25% Similarity=0.256 Sum_probs=225.6
Q ss_pred HHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 020606 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (323)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~ 89 (323)
.|++++|+|||++.+ +||+|+|++|||||||||++.++++++.++|. ++|+++|+||||.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 489999999999864 69999999999999999999999999999873 56999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHH
Q 020606 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (323)
Q Consensus 90 ~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (323)
++|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+. +++. +.+|++++.||.+++ ||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999876 6665443 3443 778999999999997 99999999999
Q ss_pred hhCC-CccEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC-----ccccccccCCCCC
Q 020606 170 DSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI 233 (323)
Q Consensus 170 q~~~-~~d~vvvp~G~Gg~~aGi~~~~~~~~~------~~~vigv~~~~~~~~~----~~~~-----~~~~~~gl~~~~~ 233 (323)
|+++ .||+||+|+|+||+++|++++|+++.+ .+|+|+|||++++++. ...+ ..+.++++..+.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~- 268 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR- 268 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-
Confidence 9974 599999999999999999999998764 4799999999986543 2211 234455555442
Q ss_pred Cccc------cccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCc
Q 020606 234 PPVL------DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYL 305 (323)
Q Consensus 234 ~~~~------~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~ 305 (323)
|... ..+. +..+.|+|+|+++++++|++ +|+++||++|++++++.++ ++++||+++|++|.|.+
T Consensus 269 p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 269 PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 3221 1233 78999999999999999986 6999999999999999875 34689999999998853
No 53
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=4.4e-55 Score=411.80 Aligned_cols=286 Identities=21% Similarity=0.248 Sum_probs=241.2
Q ss_pred hhCCCCeeecccccCCC--------CceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 020606 14 LIGHTPMVYLNNVVDGC--------VARIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (323)
Q Consensus 14 ~~~~TPl~~~~~l~~~~--------g~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~~~---------- 69 (323)
++++|||++++++++.+ +.+||+|+|++|| |||||+|++.+++.. +++.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 89999999999998743 5799999999999 999999999998864 67888876653
Q ss_pred ------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 020606 70 ------TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (323)
Q Consensus 70 ------~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (323)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++.+ |+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~--~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESD--YGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999999999999999999999999999999976 89999999999887656
Q ss_pred eEeeCCCCCCCchhhhhhchHHHHHHhhCC--------CccEEEEecCCchhHHHHHHHHHhh-CCCcEEEEEecCCCcc
Q 020606 144 GYILGQFENPANPEIHYETTGPEIWNDSGG--------KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAV 214 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vvvp~G~Gg~~aGi~~~~~~~-~~~~~vigv~~~~~~~ 214 (323)
.||+++. |+.++.+||+|+++||++|+++ .||+|++|+|+||+++|++.++|+. +|+++||+|||+++++
T Consensus 225 ~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 7888774 5555557999999999999952 4779999999999999999999997 7999999999999875
Q ss_pred c----cCCCC-----------ccccccccCCCCCCc---cccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHH
Q 020606 215 L----NGGQP-----------GKHLIQGIGAGVIPP---VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAA 276 (323)
Q Consensus 215 ~----~~~~~-----------~~~~~~gl~~~~~~~---~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 276 (323)
+ ..+.. ..+.++||+++..+. .+..+.+|+++.|+|+|+++++++|++++|+++||++|+++
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~l 383 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGM 383 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHH
Confidence 3 22221 246778888775322 23356899999999999999999999999999999999999
Q ss_pred HHHHHHhhCC-----------CC-CCCEEEEEecCCCC
Q 020606 277 AAAIRVAKRP-----------EN-AGKLIVVIFPSAGE 302 (323)
Q Consensus 277 aa~~~~~~~~-----------~~-~~~~vv~v~~~gg~ 302 (323)
+++.++++.. .. .+.+.++..|+|+.
T Consensus 384 aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~ 421 (431)
T TIGR02035 384 EGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGM 421 (431)
T ss_pred HHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCC
Confidence 9999887652 00 34566777744443
No 54
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-56 Score=374.43 Aligned_cols=294 Identities=23% Similarity=0.316 Sum_probs=257.9
Q ss_pred chhhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 020606 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTG 81 (323)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g 81 (323)
+++...++||..++.+||++.++.|.+..|.+||+|+|++|.|||||.|||.+.++.+.++.. ...|++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 466778899999999999999999999999999999999999999999999999998874432 3569999999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhh
Q 020606 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE 161 (323)
Q Consensus 82 ~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (323)
+|+|++|+..|+|++||||.++|..|+..++.|||+|+++++. .+++.+.++++.++. +.+.++||++|..+ +|++
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccc
Confidence 9999999999999999999999999999999999999999986 567888899998887 88999999999999 5999
Q ss_pred chHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc----ccCCCC-----ccccccccCCC-
Q 020606 162 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQP-----GKHLIQGIGAG- 231 (323)
Q Consensus 162 t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~----~~~~~~-----~~~~~~gl~~~- 231 (323)
|++.|++||+ +.+|.+|||+|+||+++|++.+.+.+.|+++|++|||++.+. +..+.. ..+.++|....
T Consensus 162 TiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~ 240 (323)
T KOG1251|consen 162 TIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSH 240 (323)
T ss_pred hHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhcc
Confidence 9999999999 489999999999999999999999999999999999988752 333333 23556665543
Q ss_pred --CCCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcch
Q 020606 232 --VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 232 --~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~ 307 (323)
..+|.+.++++|++++|+|+|+.++++.++++..+.+||+++.++|+++..-. ....+++.+|+ +|||.++..
T Consensus 241 lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~--~~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 241 LGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKF--ALNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred ccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhH--HhccCceEEEE-eCCcccccc
Confidence 34778888999999999999999999999999999999999999999885433 23467888888 889865553
No 55
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=7e-55 Score=416.57 Aligned_cols=282 Identities=19% Similarity=0.243 Sum_probs=238.9
Q ss_pred HHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 020606 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (323)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~ 89 (323)
.+++++++|||++++ +++.+|.+||+|+|++|||||||||++.+++.++++.| .++|+++|+||||+|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYA-----ANGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcC-----CCEEEEeCCChHHHHHHHHHH
Confidence 478899999999984 66667889999999999999999999999999999887 456999999999999999999
Q ss_pred HcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHH
Q 020606 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 169 (323)
Q Consensus 90 ~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (323)
++|++|+||||+++++.|+.+++.+||+|+.++++ ++++.+.+++++++. ++|++++++||.+++ ||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-~~~~~~~~~np~~~e-G~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGES--VDEAIEYAEELARLN-GLYNVTPEYNIIGLE-GQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECCC--HHHHHHHHHHHHHhC-CeEecCCCCChhHhh-hHHHHHHHHHH
Confidence 99999999999999999999999999999999876 899999998887775 899999999999997 99999999999
Q ss_pred hhCCCccEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCcccc----CCCC--ccccccccCCCCCCcc-
Q 020606 170 DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP--GKHLIQGIGAGVIPPV- 236 (323)
Q Consensus 170 q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~------~~~vigv~~~~~~~~~----~~~~--~~~~~~gl~~~~~~~~- 236 (323)
|++ ||+||+|+|+||+++|++.+|+++.+ .++||+|||++++++. .+.. ..+.+.++..+. |..
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~-p~~~ 285 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKN-PVMK 285 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCC-CCCH
Confidence 994 99999999999999999999999765 3799999999886542 2211 223444553331 211
Q ss_pred -----ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEEEEecCCCCCCc
Q 020606 237 -----LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYL 305 (323)
Q Consensus 237 -----~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv~v~~~gg~~~~ 305 (323)
...+.-+.++.|+|+++.++.+.++ ++|+++||++|+++++++++.+.+. .++++||+++|++|.|+.
T Consensus 286 ~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 286 EYVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 1223345678888777777766665 5899999999999999999988765 467899999999999875
No 56
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.3e-54 Score=408.56 Aligned_cols=299 Identities=20% Similarity=0.200 Sum_probs=244.9
Q ss_pred hhhhHHHH--hhhhCCCCeeecccccCCCC-ceEEEEeCCC-CCCCChhhHHHHHHHHHHHH--cCCC------------
Q 020606 4 KCEIKKDV--TELIGHTPMVYLNNVVDGCV-ARIAAKLEMM-QPCSSVKDRIAYSMIKDAED--KGLI------------ 65 (323)
Q Consensus 4 ~~~~~~~i--~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~-~ptGS~K~R~a~~~l~~a~~--~g~~------------ 65 (323)
+..+.+++ .....+|||+++++|++.+| .+||+|+|++ |||||||+||+.+.+.++.. .+.-
T Consensus 29 ~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 108 (399)
T PRK08206 29 AKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSG 108 (399)
T ss_pred HHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhh
Confidence 33456677 45889999999999999899 6999999998 59999999999998887753 2210
Q ss_pred --C---CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHh
Q 020606 66 --T---PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNR 140 (323)
Q Consensus 66 --~---~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 140 (323)
. ++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.+||+|+.++.+ ++++.+.+.+++++
T Consensus 109 ~~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~--~~~~~~~a~~~~~~ 185 (399)
T PRK08206 109 EVREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGN--YDDSVRLAAQEAQE 185 (399)
T ss_pred HHHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHH
Confidence 0 11 2489999999999999999999999999999999999999999999999999975 88999999988877
Q ss_pred CCCeEeeC-----CCCC-CCchhhhhhchHHHHHHhhCC---CccEEEEecCCchhHHHHHHHHHhhC--CCcEEEEEec
Q 020606 141 TPNGYILG-----QFEN-PANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKN--PNIKVYGIEP 209 (323)
Q Consensus 141 ~~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~q~~~---~~d~vvvp~G~Gg~~aGi~~~~~~~~--~~~~vigv~~ 209 (323)
. +++|++ ||+| +.++..||.|+++||++|+++ .||+||+|+|+||+++|++.++++.+ +.++||+|||
T Consensus 186 ~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep 264 (399)
T PRK08206 186 N-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEP 264 (399)
T ss_pred c-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECC
Confidence 5 788886 5765 455446999999999999965 59999999999999999999999884 4789999999
Q ss_pred CCCcccc----CCCCc------cccccccCCCCC---CccccccCcCeEEEeCHHHHHHHHHHHHH----hcCcEeeccH
Q 020606 210 SESAVLN----GGQPG------KHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLVGISS 272 (323)
Q Consensus 210 ~~~~~~~----~~~~~------~~~~~gl~~~~~---~~~~~~~~~~~~~~V~d~e~~~a~~~l~~----~~gi~~~p~s 272 (323)
++++++. .+.+. .+.++++..+.. ++.+.++.+|+++.|+|+|+++++++|++ ++|+++||++
T Consensus 265 ~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsg 344 (399)
T PRK08206 265 DQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESG 344 (399)
T ss_pred CCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchH
Confidence 9987652 33321 345667765432 23345678899999999999999999996 7899999999
Q ss_pred HHHHHHHHHHhhC---------CC-CCCCEEEEEecCCCCCCcch
Q 020606 273 GAAAAAAIRVAKR---------PE-NAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 273 g~a~aa~~~~~~~---------~~-~~~~~vv~v~~~gg~~~~~~ 307 (323)
|+++++++++.+. +. .++++||+|+| +|+++.++
T Consensus 345 Aa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~ilt-gG~~d~~~ 388 (399)
T PRK08206 345 AVGLGALAALMTDPDYQELREKLGLDEDSRVLLIST-EGDTDPDR 388 (399)
T ss_pred HHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEEC-CCCCCHHH
Confidence 9999999976532 22 34678888885 88876654
No 57
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=3.4e-54 Score=398.43 Aligned_cols=290 Identities=24% Similarity=0.241 Sum_probs=245.3
Q ss_pred hhhhHHHHhhhhCCCCeeecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 020606 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVA-RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGI 82 (323)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~ 82 (323)
+.+..+++++.+++|||+++++|++.+|. +||+|+|++|||||||||++.+++.++.++|. .+|+++|+||||+
T Consensus 10 ~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~ 84 (328)
T TIGR00260 10 VTPEKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGA 84 (328)
T ss_pred CCChhhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHH
Confidence 33334568889999999999999888886 99999999999999999999999999998883 5699999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCC--CCchhhh
Q 020606 83 GLAFIAASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFEN--PANPEIH 159 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~g 159 (323)
|+|++|+.+|++|+||||++ +++.|+..++.+||+|+.++++ ++++.+.+++++++. +.++++++ | |.+++ |
T Consensus 85 a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~-n~~~~~~~-g 159 (328)
T TIGR00260 85 AAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDGN--FDDAQRLVKQLFGDK-EALGLNSV-NSIPYRLE-G 159 (328)
T ss_pred HHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecCC--HHHHHHHHHHHHhhc-CeeecccC-CCCCeEee-e
Confidence 99999999999999999998 8999999999999999999875 899999999888775 55655544 4 88886 9
Q ss_pred hhchHHHHHHhhCC-CccEEEEecCCchhHHHHHHHHHhh-------CCCcEEEEEecCCCccc-----cCCCCc-----
Q 020606 160 YETTGPEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVL-----NGGQPG----- 221 (323)
Q Consensus 160 ~~t~~~Ei~~q~~~-~~d~vvvp~G~Gg~~aGi~~~~~~~-------~~~~~vigv~~~~~~~~-----~~~~~~----- 221 (323)
|.|+++||++|+++ .||+||+|+|+||+++|++.+|++. .| ++++|||.+++.+ ..+++.
T Consensus 160 ~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~ 237 (328)
T TIGR00260 160 QKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAADIVRAFLESGQWEPIEDP 237 (328)
T ss_pred ehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCChHHHHHHcCCCcCcCCCC
Confidence 99999999999974 7999999999999999999999974 34 9999999998433 133221
Q ss_pred cccccccCCCCCCcc------ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCC-CCCCEEE
Q 020606 222 KHLIQGIGAGVIPPV------LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIV 294 (323)
Q Consensus 222 ~~~~~gl~~~~~~~~------~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~-~~~~~vv 294 (323)
.+.+++++.+. |.. +.....++.+.|+|+|++++++++++++|+++||++|+++++++++.+++. .+++++|
T Consensus 238 ~t~~~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv 316 (328)
T TIGR00260 238 ATLSTAIDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVV 316 (328)
T ss_pred CccCcceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEE
Confidence 34445555442 322 233678899999999999999999999999999999999999999887654 4678899
Q ss_pred EEecCCCCCCcc
Q 020606 295 VIFPSAGERYLS 306 (323)
Q Consensus 295 ~v~~~gg~~~~~ 306 (323)
+++|++|.|+.|
T Consensus 317 ~i~tG~~~k~~~ 328 (328)
T TIGR00260 317 CALTGNGLKDPE 328 (328)
T ss_pred EEecCCCCCCCC
Confidence 999999988743
No 58
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=5.5e-53 Score=374.85 Aligned_cols=243 Identities=46% Similarity=0.641 Sum_probs=225.3
Q ss_pred CCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 020606 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLII 97 (323)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~v 97 (323)
|||+++++|++..+.+||+|+|++|||||||||++.+++..+.++|.+ ++ .+|+++|+||||.|+|++|+++|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999998855 33 5699999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCC-Ccc
Q 020606 98 IMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVD 176 (323)
Q Consensus 98 v~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d 176 (323)
|+|.+.++.|+++++.+||+|+.++.+ ++++.+.+++++++.++++|+++++|+.+++ ||.++++||++|+++ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999987 8899999999988856899999999999997 899999999999976 699
Q ss_pred EEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCccccccccCCCCCCccccccCcCeEEEeCHHHHHHH
Q 020606 177 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIET 256 (323)
Q Consensus 177 ~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~e~~~a 256 (323)
+||+|+|+||+++|++.+|++.+|.++||+|+| +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999988 6899999999999
Q ss_pred HHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Q 020606 257 SKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSA 300 (323)
Q Consensus 257 ~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~g 300 (323)
++++++++|+++||++|++++++.+++++. .+++++|+++|++
T Consensus 202 ~~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~vv~v~tg~ 244 (244)
T cd00640 202 IRLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVVILTGG 244 (244)
T ss_pred HHHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 999999999999999999999999988764 3567888888653
No 59
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5e-52 Score=387.89 Aligned_cols=291 Identities=23% Similarity=0.248 Sum_probs=232.8
Q ss_pred hhhhC-CCCeeecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 020606 12 TELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (323)
Q Consensus 12 ~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~ 89 (323)
..+++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..+++.|+ ...|+++|+||||+|+|++|+
T Consensus 56 ~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa 131 (402)
T PRK13028 56 KHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAA 131 (402)
T ss_pred HHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHH
Confidence 45565 89999999999988 5899999999999999999999999999999884 344556899999999999999
Q ss_pred HcCCeEEEEeCCCCCH---HHHHHHHHCCCEEEEeCC-CCChhHHHHHHHH-HHHhCCCeEeeCCC-----CCCCchhhh
Q 020606 90 SRGYKLIIIMPSTYSI---ERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYILGQF-----ENPANPEIH 159 (323)
Q Consensus 90 ~~Gi~~~vv~p~~~~~---~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~~-----~~~~~~~~g 159 (323)
++|++|+||||+...+ .|+.+|+.+||+|+.++. ...++++.+.+.+ ++++.++.+|+.+. ..|.++..|
T Consensus 132 ~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~ 211 (402)
T PRK13028 132 LFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDF 211 (402)
T ss_pred HcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHH
Confidence 9999999999986443 578899999999999975 2357888777744 45553456666321 123345459
Q ss_pred hhchHHHHHHhhC----CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCC--------CccccCCCCc------
Q 020606 160 YETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE--------SAVLNGGQPG------ 221 (323)
Q Consensus 160 ~~t~~~Ei~~q~~----~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~--------~~~~~~~~~~------ 221 (323)
+.+++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|+++||||||.+ ++++..+.+.
T Consensus 212 q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~ 290 (402)
T PRK13028 212 QSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFK 290 (402)
T ss_pred hHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccc
Confidence 9999999999973 3699999999999999999999986 4899999999998 5555444331
Q ss_pred --------------cccccccCCCCCCcc---ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhh
Q 020606 222 --------------KHLIQGIGAGVIPPV---LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAK 284 (323)
Q Consensus 222 --------------~~~~~gl~~~~~~~~---~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~ 284 (323)
.+...+++.+.+.+. +.....++++.|+|+|+++++++|++.+||+++++||+++++++++++
T Consensus 291 ~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~ 370 (402)
T PRK13028 291 SYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAP 370 (402)
T ss_pred eeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhh
Confidence 233445544322221 223445789999999999999999999999999999999999999876
Q ss_pred CCCCCCCEEEEEecCCCCCCcchh
Q 020606 285 RPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 285 ~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
. ..++++||+++|+.|+||++++
T Consensus 371 ~-l~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 371 E-LSKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred h-cCCCCeEEEEECCCCccCHHHH
Confidence 5 2467899999988899999876
No 60
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.2e-51 Score=388.38 Aligned_cols=297 Identities=23% Similarity=0.262 Sum_probs=227.1
Q ss_pred hHHHHhhhhCCCCeeecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHH
Q 020606 7 IKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIG 83 (323)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~-~S~GN~g~a 83 (323)
+.+++.+...+|||+++++|++.+| ++||+|+|++|||||||+|++.+++.++.++|. .++++ +|+||||+|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 3344555546899999999998877 699999999999999999999999999999995 34665 588999999
Q ss_pred HHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCCCCChhH------------------HHHHHHHHHHhCC
Q 020606 84 LAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPAVGFEG------------------FVKKGEEILNRTP 142 (323)
Q Consensus 84 ~A~~a~~~Gi~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~------------------~~~~a~~~~~~~~ 142 (323)
+|++|+.+|++|+||||..+ ++.|+.+|+.+||+|+.++.+ +++ ++..+.+.+++.+
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~ 210 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDE 210 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCC
Confidence 99999999999999999854 568899999999999999875 333 2445666665543
Q ss_pred -CeEeeCCCCCCCchhhhhhchHHHHHHhhCC---CccEEEEecCCchhHHHHHHHHHhh----CCCcEEEEEecCCCcc
Q 020606 143 -NGYILGQFENPANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEK----NPNIKVYGIEPSESAV 214 (323)
Q Consensus 143 -~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~~d~vvvp~G~Gg~~aGi~~~~~~~----~~~~~vigv~~~~~~~ 214 (323)
..|+.+++.|+ .. .||.++++||++|++. .||+||+|+|+||+++|++.+|.+. .++++||+|||++++.
T Consensus 211 ~~~y~~~~~~n~-~~-~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~ 288 (419)
T TIGR01415 211 DTKYSLGSVLNH-VL-LHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPT 288 (419)
T ss_pred CCEEEeCCCCcH-HH-HHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChh
Confidence 44555555553 33 5999999999999963 5999999999999999999988432 2589999999999987
Q ss_pred ccCCCC----------cc-ccccccCCCCCCccc-----------------cccCcCeEEEeCHHHHHHHHHHHHHhcCc
Q 020606 215 LNGGQP----------GK-HLIQGIGAGVIPPVL-----------------DVAMLDEVITVSSEEAIETSKLLALKEGL 266 (323)
Q Consensus 215 ~~~~~~----------~~-~~~~gl~~~~~~~~~-----------------~~~~~~~~~~V~d~e~~~a~~~l~~~~gi 266 (323)
+..+.. .+ ..+.+++...+|... ..+.+.+.+.|+|+|+++++++|++++|+
T Consensus 289 l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi 368 (419)
T TIGR01415 289 LTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGI 368 (419)
T ss_pred hhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCC
Confidence 755431 11 223445544433321 12344568899999999999999999999
Q ss_pred EeeccHHHHHHHHHHHhhCCCCCCC--EEEEEecCCCCCCcchhhchhHH
Q 020606 267 LVGISSGAAAAAAIRVAKRPENAGK--LIVVIFPSAGERYLSTALFESIR 314 (323)
Q Consensus 267 ~~~p~sg~a~aa~~~~~~~~~~~~~--~vv~v~~~gg~~~~~~~~~~~~~ 314 (323)
+++|++|++++++++++++....++ ++|++++++|+ +|...++++.
T Consensus 369 ~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~--~d~~~y~~~~ 416 (419)
T TIGR01415 369 VPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGL--LDLKAYAKYL 416 (419)
T ss_pred ccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCc--CCHHHHHHHh
Confidence 9999999999999998877654344 34444533355 5544555554
No 61
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=8.3e-52 Score=386.28 Aligned_cols=285 Identities=24% Similarity=0.254 Sum_probs=225.6
Q ss_pred CCCCeeecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCC
Q 020606 16 GHTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIGLAFIAASRGY 93 (323)
Q Consensus 16 ~~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~-~S~GN~g~a~A~~a~~~Gi 93 (323)
.+|||+++++|++.+ +.+||+|+|++|||||||+|++.+.+..+.++|. ..+++ +|+||||+|+|++|+++|+
T Consensus 33 ~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~~a~~~G~ 107 (365)
T cd06446 33 RPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATATACALFGL 107 (365)
T ss_pred CCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHhCC
Confidence 499999999998887 5799999999999999999999999999998884 34565 6899999999999999999
Q ss_pred eEEEEeCCCCC---HHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHH-HHhC-CCeEeeCCCC----CCCchhhhhhch
Q 020606 94 KLIIIMPSTYS---IERRIILRALGAEVYLADPAV-GFEGFVKKGEEI-LNRT-PNGYILGQFE----NPANPEIHYETT 163 (323)
Q Consensus 94 ~~~vv~p~~~~---~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~-~~~~-~~~~~~~~~~----~~~~~~~g~~t~ 163 (323)
+|+||||+..+ +.|+++++.+||+|+.++... .+++++..+.+. .++. ..+|+++++. ++.++.+||.|+
T Consensus 108 ~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~ 187 (365)
T cd06446 108 ECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVI 187 (365)
T ss_pred CeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHH
Confidence 99999998643 367889999999999998642 345665444433 3332 2344443321 233556799999
Q ss_pred HHHHHHhhC----CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCC--------CC-----------
Q 020606 164 GPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG--------QP----------- 220 (323)
Q Consensus 164 ~~Ei~~q~~----~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~--------~~----------- 220 (323)
++||++|++ ..||+||+|+|+|||++|++.++++ .++++||||||.+++.+... ..
T Consensus 188 ~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~ 266 (365)
T cd06446 188 GEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTL 266 (365)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhcc
Confidence 999999995 3699999999999999999999887 46899999999998765321 11
Q ss_pred ---------ccccccccCCCC-CCc--cccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCC
Q 020606 221 ---------GKHLIQGIGAGV-IPP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN 288 (323)
Q Consensus 221 ---------~~~~~~gl~~~~-~~~--~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~ 288 (323)
..+.+++++.+. .+. .+..+.+|+++.|+|+|++++++++++++|+++||++|+++++++++.++. .
T Consensus 267 ~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~ 345 (365)
T cd06446 267 QDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-G 345 (365)
T ss_pred ccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-C
Confidence 112233444321 111 133467889999999999999999999999999999999999999988764 3
Q ss_pred CCCEEEEEecCCCCCCcch
Q 020606 289 AGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 289 ~~~~vv~v~~~gg~~~~~~ 307 (323)
++++||+|+|++|++|+++
T Consensus 346 ~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 346 KEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred CCCeEEEEeCCCCcccccc
Confidence 5679999999999999886
No 62
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=8.2e-52 Score=388.08 Aligned_cols=291 Identities=21% Similarity=0.261 Sum_probs=227.0
Q ss_pred hhhh-CCCCeeecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 020606 12 TELI-GHTPMVYLNNVVDGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89 (323)
Q Consensus 12 ~~~~-~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~ 89 (323)
..++ .+|||+++++|++.+| .+||+|+|++|||||||+|++.+.+..+.+.|. ...|+++|+||||+|+|++|+
T Consensus 44 ~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~ 119 (385)
T TIGR00263 44 RNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAAA 119 (385)
T ss_pred HHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHH
Confidence 3344 4899999999998887 799999999999999999999999999988874 344556899999999999999
Q ss_pred HcCCeEEEEeCCC-CCH--HHHHHHHHCCCEEEEeCCC-CChhHHH-HHHHHHHHhCCCeEee-CCCCC----CCchhhh
Q 020606 90 SRGYKLIIIMPST-YSI--ERRIILRALGAEVYLADPA-VGFEGFV-KKGEEILNRTPNGYIL-GQFEN----PANPEIH 159 (323)
Q Consensus 90 ~~Gi~~~vv~p~~-~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~~g 159 (323)
++|++|+||||+. .+. .++++|+.+||+|+.++.. ..++++. +.+++++++.++.+|+ +++.+ +.++..|
T Consensus 120 ~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~ 199 (385)
T TIGR00263 120 LLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDF 199 (385)
T ss_pred HcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHH
Confidence 9999999999985 343 5788999999999999753 3366664 3444555554455565 33332 2345569
Q ss_pred hhchHHHHHHhhC----CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCc------
Q 020606 160 YETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG------ 221 (323)
Q Consensus 160 ~~t~~~Ei~~q~~----~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~--------~~~~~~~~------ 221 (323)
|+|+++||++|+. ..||+||+|+|+||+++|++.++.. .|+++||||||.++. .+..+.+.
T Consensus 200 ~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~ 278 (385)
T TIGR00263 200 QSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMK 278 (385)
T ss_pred hhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcc
Confidence 9999999999983 2589999999999999999998855 699999999999852 23223211
Q ss_pred --------------cccccccCCCCC-C--ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhh
Q 020606 222 --------------KHLIQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAK 284 (323)
Q Consensus 222 --------------~~~~~gl~~~~~-~--~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~ 284 (323)
.+.+.+++.+.. | +.+.....++++.|+|+|+++++++|++++|++++|++|+++++++++++
T Consensus 279 ~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~ 358 (385)
T TIGR00263 279 TYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAP 358 (385)
T ss_pred cccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHH
Confidence 122334433221 1 11234456789999999999999999999999999999999999999876
Q ss_pred CCCCCCCEEEEEecCCCCCCcchh
Q 020606 285 RPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 285 ~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
. ..++++||+++|++|++|++++
T Consensus 359 ~-l~~~~~Vv~i~~g~G~~d~~~~ 381 (385)
T TIGR00263 359 T-LPKDQIVVVNLSGRGDKDIFTI 381 (385)
T ss_pred h-CCCCCeEEEEeCCCCcCCHHHH
Confidence 4 2367899999989899998864
No 63
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=4.5e-52 Score=387.42 Aligned_cols=296 Identities=18% Similarity=0.210 Sum_probs=240.6
Q ss_pred hhHHHHhhhhCCCCeeecccccCCCC-ceEEEEeCCCC-CCCChhhHHHHHHHHHHHHc----------------CCCC-
Q 020606 6 EIKKDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQ-PCSSVKDRIAYSMIKDAEDK----------------GLIT- 66 (323)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~-ptGS~K~R~a~~~l~~a~~~----------------g~~~- 66 (323)
...+++..+ .+|||+++++|++.+| .+||+|+|++| ||||||+||+.+.+..+.++ +.+.
T Consensus 12 ~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (376)
T TIGR01747 12 AFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGE 90 (376)
T ss_pred HHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHh
Confidence 344566555 8999999999999999 59999999998 48999999999999887542 1111
Q ss_pred -CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeE
Q 020606 67 -PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY 145 (323)
Q Consensus 67 -~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 145 (323)
.+..+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.+||+|+.++.. ++++.+.+++++++. +++
T Consensus 91 ~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~--~~~a~~~a~~~~~~~-g~~ 167 (376)
T TIGR01747 91 KMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMN--YDDTVRLAMQMAQQH-GWV 167 (376)
T ss_pred hcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CcE
Confidence 1235699999999999999999999999999999999999999999999999999875 899999999888775 688
Q ss_pred eeC-----CCCC--CCchhhhhhchHHHHHHhhCC----CccEEEEecCCchhHHHHHHHHHhhC-C-CcEEEEEecCCC
Q 020606 146 ILG-----QFEN--PANPEIHYETTGPEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKN-P-NIKVYGIEPSES 212 (323)
Q Consensus 146 ~~~-----~~~~--~~~~~~g~~t~~~Ei~~q~~~----~~d~vvvp~G~Gg~~aGi~~~~~~~~-~-~~~vigv~~~~~ 212 (323)
+++ +|+| |..+ .||+|+++||++|++. .||+||+|+|+||+++|++.++++.. + .++||+|||.++
T Consensus 168 ~~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga 246 (376)
T TIGR01747 168 VVQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKA 246 (376)
T ss_pred EeccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCC
Confidence 877 4655 5556 4999999999999952 79999999999999999999998765 3 369999999999
Q ss_pred cccc----C--CCC------ccccccccCCCCC---CccccccCcCeEEEeCHHHHHHHHHHHHHhc----CcEeeccHH
Q 020606 213 AVLN----G--GQP------GKHLIQGIGAGVI---PPVLDVAMLDEVITVSSEEAIETSKLLALKE----GLLVGISSG 273 (323)
Q Consensus 213 ~~~~----~--~~~------~~~~~~gl~~~~~---~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~----gi~~~p~sg 273 (323)
+++. . +++ ..+.+++++++.. ++.+.++..+.++.|+|+|+.+++++|++.. ++++||+++
T Consensus 247 ~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga 326 (376)
T TIGR01747 247 DCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGA 326 (376)
T ss_pred CHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchH
Confidence 8752 2 332 1356778877542 3445667889999999999999999999865 499999999
Q ss_pred HHHHHHHHH---------hhCCCC-CCCEEEEEecCCCCCCcch
Q 020606 274 AAAAAAIRV---------AKRPEN-AGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 274 ~a~aa~~~~---------~~~~~~-~~~~vv~v~~~gg~~~~~~ 307 (323)
++++++... .+.+.. ++++||+++ +||+...+.
T Consensus 327 ~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~~ 369 (376)
T TIGR01747 327 VGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPDH 369 (376)
T ss_pred HHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHHH
Confidence 999887733 233333 457777777 899966654
No 64
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-52 Score=357.82 Aligned_cols=311 Identities=40% Similarity=0.603 Sum_probs=271.3
Q ss_pred HHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 9 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
+-+-..+|+|||+++..|++..||+|+.|.|.+||.||.|||.|.+++..|++.|++.||.. |++.++||+|+++|..|
T Consensus 41 ~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~ 119 (391)
T KOG1481|consen 41 SGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVA 119 (391)
T ss_pred chhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHhh
Confidence 35667899999999999999999999999999999999999999999999999999999954 99999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC------ChhHHHHHHHHHHHhCC--CeEeeCCCCCCCchhhhh
Q 020606 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV------GFEGFVKKGEEILNRTP--NGYILGQFENPANPEIHY 160 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~ 160 (323)
+.+|.+|+|+||++.+.+|.+.++.+||+|..+++.. ....+.+.|.+...+.. ..+|.+||+|+.|+.+||
T Consensus 120 ~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHy 199 (391)
T KOG1481|consen 120 RALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHY 199 (391)
T ss_pred hhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHh
Confidence 9999999999999999999999999999999987642 12234444554443321 347789999999999999
Q ss_pred hchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCC-cEEEEEecCCCcccc-------------CCC----Ccc
Q 020606 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-IKVYGIEPSESAVLN-------------GGQ----PGK 222 (323)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~-~~vigv~~~~~~~~~-------------~~~----~~~ 222 (323)
.++++||+.|..+.+|.+++.+|+|||++|+.+++|+..+. +.++-++|.++..+. .|+ +..
T Consensus 200 etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~d 279 (391)
T KOG1481|consen 200 ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVD 279 (391)
T ss_pred cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcc
Confidence 99999999999999999999999999999999999998875 899999999995321 111 134
Q ss_pred ccccccCCCCCCccc--cccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Q 020606 223 HLIQGIGAGVIPPVL--DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSA 300 (323)
Q Consensus 223 ~~~~gl~~~~~~~~~--~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~g 300 (323)
+..+|+|...++.++ ..+++|+.+.|+|++++++.+.|..++|++++.+++.+..|+.++++.. .+|+++|+++||.
T Consensus 280 ti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDs 358 (391)
T KOG1481|consen 280 TITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDS 358 (391)
T ss_pred hhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 667888887766554 4578999999999999999999999999999999999999999998764 6899999999999
Q ss_pred CCCCcchhhchhHHhhccCCC
Q 020606 301 GERYLSTALFESIRHEVENMP 321 (323)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~ 321 (323)
|.|+++..+.+++..++..-+
T Consensus 359 G~rh~sk~~~~~~l~~~~l~p 379 (391)
T KOG1481|consen 359 GSRHLSKLFSESFLESKKLSP 379 (391)
T ss_pred cchHHHHhcCHHHHhhcCCCc
Confidence 999999988888888776654
No 65
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2.4e-51 Score=382.65 Aligned_cols=292 Identities=22% Similarity=0.285 Sum_probs=228.2
Q ss_pred HhhhhC-CCCeeecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 11 VTELIG-HTPMVYLNNVVDGC-VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
...+++ +|||+++++|++.+ +.+||+|+|++|||||||+|++...+..+++.|+ ...|+++|+||||+|+|++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 345566 69999999999988 5899999999999999999999999999999885 34455589999999999999
Q ss_pred HHcCCeEEEEeCCCC-C--HHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHH-HHHhCCCeEeeC-CCC--C--CCchhh
Q 020606 89 ASRGYKLIIIMPSTY-S--IERRIILRALGAEVYLADPA-VGFEGFVKKGEE-ILNRTPNGYILG-QFE--N--PANPEI 158 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~-~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~-~~~--~--~~~~~~ 158 (323)
+++|++|+||||+.. + ..|+.+|+.+||+|+.++.. ..+.++.+.+.+ +.++.++.+|+. +.. + |.++..
T Consensus 127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~ 206 (397)
T PRK04346 127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD 206 (397)
T ss_pred HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence 999999999999863 3 35788999999999999852 346666555543 555533555652 222 2 334445
Q ss_pred hhhchHHHHHHhhC----CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCc-----
Q 020606 159 HYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG----- 221 (323)
Q Consensus 159 g~~t~~~Ei~~q~~----~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~--------~~~~~~~~----- 221 (323)
||++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|+++||||||.++. ++..+.+.
T Consensus 207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~ 285 (397)
T PRK04346 207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGA 285 (397)
T ss_pred hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccc
Confidence 99999999999984 3699999999999999999999975 789999999999852 22222221
Q ss_pred ---------------cccccccCCCCCCc---cccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHh
Q 020606 222 ---------------KHLIQGIGAGVIPP---VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVA 283 (323)
Q Consensus 222 ---------------~~~~~gl~~~~~~~---~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~ 283 (323)
.+...|++.+.+.+ .+.....++++.|+|+|+++++++|++.+||+++++++.+++++++++
T Consensus 286 ~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla 365 (397)
T PRK04346 286 KTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLA 365 (397)
T ss_pred cceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhh
Confidence 22334444432211 123345678999999999999999999999999999999999999886
Q ss_pred hCCCCCCCEEEEEecCCCCCCcchh
Q 020606 284 KRPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 284 ~~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
+.. .++++||+++++.|+||++++
T Consensus 366 ~~l-~~~~~Vvv~lsGrG~kd~~~~ 389 (397)
T PRK04346 366 PTL-GKDQIIVVNLSGRGDKDVFTV 389 (397)
T ss_pred hhc-CCCCeEEEEeCCCCccCHHHH
Confidence 542 367889999988899999865
No 66
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=3.5e-51 Score=382.14 Aligned_cols=296 Identities=21% Similarity=0.283 Sum_probs=231.4
Q ss_pred HHHHhhhhC-CCCeeecccccCCC------CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChH
Q 020606 8 KKDVTELIG-HTPMVYLNNVVDGC------VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNT 80 (323)
Q Consensus 8 ~~~i~~~~~-~TPl~~~~~l~~~~------g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~ 80 (323)
...+..+++ +|||+++++|++.+ |++||+|+|++|||||||+|++...+..+++.|+ ...|+++|+|||
T Consensus 56 ~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNh 131 (410)
T PLN02618 56 AGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQH 131 (410)
T ss_pred HHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHH
Confidence 345677886 89999999999877 4899999999999999999999999998888874 333445568999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCC-CCChhHHH-HHHHHHHHhCCCeEee-CCCC--C
Q 020606 81 GIGLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADP-AVGFEGFV-KKGEEILNRTPNGYIL-GQFE--N 152 (323)
Q Consensus 81 g~a~A~~a~~~Gi~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~-~~a~~~~~~~~~~~~~-~~~~--~ 152 (323)
|+|+|++|+++|++|+||||+.. ...|+.+|+.+||+|+.++. +..++++. +..++++++.++.+|+ .+.. +
T Consensus 132 G~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~ 211 (410)
T PLN02618 132 GVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 211 (410)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCC
Confidence 99999999999999999999863 35678899999999999954 33477776 4445566653455565 2221 2
Q ss_pred C--CchhhhhhchHHHHHHhh----CCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC--------ccccCC
Q 020606 153 P--ANPEIHYETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES--------AVLNGG 218 (323)
Q Consensus 153 ~--~~~~~g~~t~~~Ei~~q~----~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~--------~~~~~~ 218 (323)
| .....++.+++.||.+|+ +..||+||+|+|+||+++|++.+|+. .|+++||||||.++ .++..+
T Consensus 212 P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g 290 (410)
T PLN02618 212 PYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKG 290 (410)
T ss_pred CCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcC
Confidence 2 223348999999998876 34699999999999999999999975 68999999999986 223333
Q ss_pred CC--------------------ccccccccCCCCCCcc---ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHH
Q 020606 219 QP--------------------GKHLIQGIGAGVIPPV---LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAA 275 (323)
Q Consensus 219 ~~--------------------~~~~~~gl~~~~~~~~---~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a 275 (323)
++ ..+...||+.+.+.+. +.....++++.|+|+|+++++++|++++||+++++|+++
T Consensus 291 ~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a 370 (410)
T PLN02618 291 EVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHA 370 (410)
T ss_pred CcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHH
Confidence 22 1123345544322221 122357889999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhh
Q 020606 276 AAAAIRVAKRPENAGKLIVVIFPSAGERYLSTAL 309 (323)
Q Consensus 276 ~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~ 309 (323)
+++++++++. ..++++||+++++.|+||++++.
T Consensus 371 ~a~a~~~a~~-l~~~~~iVv~lsgrG~Kd~~~v~ 403 (410)
T PLN02618 371 LAYLEKLCPT-LPDGTKVVVNCSGRGDKDVNTAI 403 (410)
T ss_pred HHHHHHHhHh-cCCCCEEEEEeCCCCcCCHHHHH
Confidence 9999999875 24678999999999999999763
No 67
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=5.8e-51 Score=384.30 Aligned_cols=296 Identities=22% Similarity=0.249 Sum_probs=228.5
Q ss_pred HhhhhCCCCeeecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHH
Q 020606 11 VTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIGLAFI 87 (323)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~-~S~GN~g~a~A~~ 87 (323)
+....++|||+++++|++.+| .+||+|+|++|||||||+|++..++..+.++|. ..+++ .|+||||+|+|++
T Consensus 71 ~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~a 145 (427)
T PRK12391 71 IYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALA 145 (427)
T ss_pred HHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHH
Confidence 345567999999999998876 699999999999999999999999999999984 34666 5789999999999
Q ss_pred HHHcCCeEEEEeCCC---CCHHHHHHHHHCCCEEEEeCCCCC----------------hhHHHHHHHHHHHhCCCeEeeC
Q 020606 88 AASRGYKLIIIMPST---YSIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPNGYILG 148 (323)
Q Consensus 88 a~~~Gi~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~ 148 (323)
|+.+|++|+||||+. .++.|+.+|+.+||+|+.++.+.. ...++..+.+.+++.++.+|+.
T Consensus 146 aa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~ 225 (427)
T PRK12391 146 CALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYAL 225 (427)
T ss_pred HHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEc
Confidence 999999999999974 366889999999999999976410 1124556666665544555554
Q ss_pred CCCCCCchhhhhhchHHHHHHhhC---CCccEEEEecCCchhHHHHHHHHH---hhC-CCcEEEEEecCCCccccCCCC-
Q 020606 149 QFENPANPEIHYETTGPEIWNDSG---GKVDAFIAGIGTGGTVTGAGRFLK---EKN-PNIKVYGIEPSESAVLNGGQP- 220 (323)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~q~~---~~~d~vvvp~G~Gg~~aGi~~~~~---~~~-~~~~vigv~~~~~~~~~~~~~- 220 (323)
++.+. +...||.++++||++|+. ..||+||+|+|+||+++|++.+|. ..+ +++|||+|||.+++.+..+..
T Consensus 226 ~s~~~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~ 304 (427)
T PRK12391 226 GSVLN-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYA 304 (427)
T ss_pred CCCCc-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccc
Confidence 44333 333599999999999995 369999999999999999999773 235 889999999999988765321
Q ss_pred -------c--c-ccccccCCCCCCcccc-----------------ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHH
Q 020606 221 -------G--K-HLIQGIGAGVIPPVLD-----------------VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSG 273 (323)
Q Consensus 221 -------~--~-~~~~gl~~~~~~~~~~-----------------~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg 273 (323)
. + ..+.+++.+..|..+. ...+.+.+.|+|+|+++++++|++++|++++|++|
T Consensus 305 ~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~ 384 (427)
T PRK12391 305 YDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESS 384 (427)
T ss_pred ccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHH
Confidence 1 1 2244556554433321 22334789999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC--CCCEEEEEecCCCCCCcchhhchhHH
Q 020606 274 AAAAAAIRVAKRPEN--AGKLIVVIFPSAGERYLSTALFESIR 314 (323)
Q Consensus 274 ~a~aa~~~~~~~~~~--~~~~vv~v~~~gg~~~~~~~~~~~~~ 314 (323)
++++++++++++... .+++||+++|++|+ +|...+++|.
T Consensus 385 ~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~--~d~~~y~~~l 425 (427)
T PRK12391 385 HAIAAAIDEALKAKEEGEEKVILFNLSGHGL--LDLAAYDAYL 425 (427)
T ss_pred HHHHHHHHHHHhccccCCCCEEEEEeCCCCC--CCHHHHHHHh
Confidence 999999998876432 34566666644455 6666677764
No 68
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=8.4e-52 Score=387.92 Aligned_cols=287 Identities=15% Similarity=0.110 Sum_probs=236.9
Q ss_pred hhhhCCCCeeecccccCCCCc-eEEEEeCC-------CCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 020606 12 TELIGHTPMVYLNNVVDGCVA-RIAAKLEM-------MQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (323)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~-------~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a 83 (323)
....+.|||+++++|++.+|. +||+|+|. +|||||||||++.+++.++.+.| .+.|+++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g-----~~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERG-----GKTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcC-----CCEEEEECCCHHHHH
Confidence 345678999999999998997 99995555 89999999999999999999888 356999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhch
Q 020606 84 LAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT 163 (323)
Q Consensus 84 ~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (323)
+|++|+++|++|+||||++++..+...++.+||+|+.++++ ++++.+.+++++++. +++..++++||..++ |++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g~--~d~a~~~a~~~a~~~-g~~~~~~~~~p~~ie-G~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDGD--YTDAIALADRIATLP-GFVPEGGARNVARRD-GMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCCC--HHHHHHHHHHHHHhC-CccccCCCCCHHHHh-hHHHH
Confidence 99999999999999999986544444457899999999876 899999999988775 665445667888886 99999
Q ss_pred HHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhC-------CCcEEEEEecCCCcccc----CCCCc-----------
Q 020606 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN-------PNIKVYGIEPSESAVLN----GGQPG----------- 221 (323)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~-------~~~~vigv~~~~~~~~~----~~~~~----------- 221 (323)
++||+||++..||+||+|+|+|+++.|++.+++++. ..+++++||+++++++. .+...
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~ 287 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE 287 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence 999999997459999999999998999999998742 33688999999997642 33221
Q ss_pred ----cccccccCCCCCCc-------cccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCC-C
Q 020606 222 ----KHLIQGIGAGVIPP-------VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN-A 289 (323)
Q Consensus 222 ----~~~~~gl~~~~~~~-------~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~-~ 289 (323)
.+.++++..+..+. ...++..+.++.|+|+|+.++++.|++++|+++||++|+++||++++.+.+.. +
T Consensus 288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~ 367 (398)
T TIGR03844 288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGP 367 (398)
T ss_pred ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCC
Confidence 23455654432221 12346778999999999999999999999999999999999999999887664 7
Q ss_pred CCEEEEEecCCCCCCcch
Q 020606 290 GKLIVVIFPSAGERYLST 307 (323)
Q Consensus 290 ~~~vv~v~~~gg~~~~~~ 307 (323)
+++||+++|++|.|++..
T Consensus 368 ~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 368 DDDILLNITGGGYKRLRE 385 (398)
T ss_pred CCeEEEEECCcchhhHHh
Confidence 789999999999987764
No 69
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=4.4e-51 Score=383.17 Aligned_cols=294 Identities=18% Similarity=0.198 Sum_probs=233.0
Q ss_pred HHHHhhhhCCCCeeecccccCCCC-ceEEEEeCCCC-CCCChhhHHHHHHHHHHHH--cCCC--------------C--C
Q 020606 8 KKDVTELIGHTPMVYLNNVVDGCV-ARIAAKLEMMQ-PCSSVKDRIAYSMIKDAED--KGLI--------------T--P 67 (323)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~-ptGS~K~R~a~~~l~~a~~--~g~~--------------~--~ 67 (323)
..++. ...+|||++++.|++.+| .+||+|+|++| ||||||+||+.+.+..+.+ .|.. . .
T Consensus 33 ~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~ 111 (396)
T TIGR03528 33 HQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKL 111 (396)
T ss_pred HhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhc
Confidence 34443 448999999999999999 69999999988 5999999999999987532 3310 0 0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEee
Q 020606 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL 147 (323)
Q Consensus 68 ~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (323)
...+||++|+||||+|+|++|+++|++|+||||+++++.|++.++.+||+|+.++.+ ++++.+.+++++++. +++|+
T Consensus 112 ~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~--~~~a~~~a~~~a~~~-g~~~v 188 (396)
T TIGR03528 112 GDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLN--YDDAVRLAWKMAQEN-GWVMV 188 (396)
T ss_pred cCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CcEee
Confidence 122699999999999999999999999999999999999999999999999999875 889999999988775 78888
Q ss_pred C-----CCCC--CCchhhhhhchHHHHHHhhC----CCccEEEEecCCchhHHHHHHHHHhh-CCC-cEEEEEecCCCcc
Q 020606 148 G-----QFEN--PANPEIHYETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEK-NPN-IKVYGIEPSESAV 214 (323)
Q Consensus 148 ~-----~~~~--~~~~~~g~~t~~~Ei~~q~~----~~~d~vvvp~G~Gg~~aGi~~~~~~~-~~~-~~vigv~~~~~~~ 214 (323)
+ +|+| +..+ .||+|+++||++|++ ..||+||+|+|+||+++|++.++++. .+. ++||+|||+++++
T Consensus 189 ~~~~~~~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~ 267 (396)
T TIGR03528 189 QDTAWEGYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADC 267 (396)
T ss_pred ccccccccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCch
Confidence 5 5655 3444 599999999999996 26999999999999999999999554 444 5999999999876
Q ss_pred ccC------CCC------ccccccccCCCC---CCccccccCcCeEEEeCHHHHHHHHHHHHH----hcCcEeeccHHHH
Q 020606 215 LNG------GQP------GKHLIQGIGAGV---IPPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLVGISSGAA 275 (323)
Q Consensus 215 ~~~------~~~------~~~~~~gl~~~~---~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~----~~gi~~~p~sg~a 275 (323)
+.. +.+ ..+.+++++++. .++.+.++.+|+++.|+|+|+.++++++++ ++++++||++|++
T Consensus 268 l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~ 347 (396)
T TIGR03528 268 LYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVG 347 (396)
T ss_pred HHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHH
Confidence 531 222 124567776542 123344678999999999999999999998 5789999999999
Q ss_pred HHHHHHHh---------hCCC-CCCCEEEEEecCCCCCCcch
Q 020606 276 AAAAIRVA---------KRPE-NAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 276 ~aa~~~~~---------~~~~-~~~~~vv~v~~~gg~~~~~~ 307 (323)
++++..++ +.+. .++++||+|+ +||+...+.
T Consensus 348 ~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~-tggn~d~~~ 388 (396)
T TIGR03528 348 TGLLAAVMTNPDYKELREKLQLDKNSRVLLIS-TEGDTDPDN 388 (396)
T ss_pred HHHHHHHHhCchhHHHHHhcCCCCCCEEEEEE-CCCCCCHHH
Confidence 95553322 2222 2467888887 889865553
No 70
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.8e-51 Score=380.91 Aligned_cols=291 Identities=19% Similarity=0.193 Sum_probs=234.6
Q ss_pred hhhHHHHhhhhCCCCeeecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CC
Q 020606 5 CEIKKDVTELIGHTPMVYLNNVVDGCV--ARIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TS 77 (323)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~--S~ 77 (323)
+..++++.+.+++|||++++++++.+| .+||+|+|++||+ ||||+|.+.+++.+++++|. .+|+++ |+
T Consensus 3 ~~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~ 77 (337)
T PRK12390 3 LQKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQ 77 (337)
T ss_pred CCCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCc
Confidence 445678999999999999999988777 7999999999987 78899999999999999984 568887 88
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhCCCeEe-
Q 020606 78 GNTGIGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPNGYI- 146 (323)
Q Consensus 78 GN~g~a~A~~a~~~Gi~~~vv~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~- 146 (323)
||||+|+|++|+++|++|++|+|...+ ..|+..++.+||+|+.++.+. .+.++++.+.+..++..+..|
T Consensus 78 GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (337)
T PRK12390 78 SNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYA 157 (337)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEE
Confidence 999999999999999999999876544 237779999999999998751 233666666666665334444
Q ss_pred eCCCC--CCCchhhhhhchHHHHHHh---hCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC-
Q 020606 147 LGQFE--NPANPEIHYETTGPEIWND---SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP- 220 (323)
Q Consensus 147 ~~~~~--~~~~~~~g~~t~~~Ei~~q---~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~- 220 (323)
++++. ++...+ ||.++++||++| ++++||+||+|+|+|||++|++.+||+.+|++|||||++.++..+...+.
T Consensus 158 ~~~~~~~~~~~~~-G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~ 236 (337)
T PRK12390 158 IPAGASDHPLGGL-GFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVL 236 (337)
T ss_pred eCCcCCCCCcccH-HHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHH
Confidence 54442 344554 899999999998 44579999999999999999999999999999999999999876533211
Q ss_pred --ccccccccCCCC--CCc--cccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeecc-HHHHHHHHHHHhhCCCC-CCCE
Q 020606 221 --GKHLIQGIGAGV--IPP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGIS-SGAAAAAAIRVAKRPEN-AGKL 292 (323)
Q Consensus 221 --~~~~~~gl~~~~--~~~--~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~~-~~~~ 292 (323)
..+.+++++.+. .+. .+..+++++.+.|+|+|++++++++++++|+++||+ ||+++++++++++++.. ++++
T Consensus 237 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~ 316 (337)
T PRK12390 237 RIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSK 316 (337)
T ss_pred HHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCe
Confidence 223334444432 222 345678899999999999999999999999999998 99999999999988764 5678
Q ss_pred EEEEecCCCC
Q 020606 293 IVVIFPSAGE 302 (323)
Q Consensus 293 vv~v~~~gg~ 302 (323)
||++| +||.
T Consensus 317 vv~~h-tgg~ 325 (337)
T PRK12390 317 VLYAH-LGGV 325 (337)
T ss_pred EEEEe-CCCh
Confidence 88888 6664
No 71
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=3.8e-51 Score=378.58 Aligned_cols=291 Identities=21% Similarity=0.219 Sum_probs=235.6
Q ss_pred hhHHHHhhhhCCCCeeecccccCCCCc--eEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCC
Q 020606 6 EIKKDVTELIGHTPMVYLNNVVDGCVA--RIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSG 78 (323)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~--~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~--S~G 78 (323)
..++|+.+.+++|||+++++|++.+|. +||+|+|++||+ ||||+|++.+++.+++++|. ++|+++ |+|
T Consensus 3 ~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~g 77 (337)
T TIGR01274 3 SRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQS 77 (337)
T ss_pred CcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcc
Confidence 456789999999999999999988774 999999999986 77899999999999999994 568876 779
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHCCCEEEEeCCCC--ChhHHHHHHHHHHHhC-CCeEee
Q 020606 79 NTGIGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRT-PNGYIL 147 (323)
Q Consensus 79 N~g~a~A~~a~~~Gi~~~vv~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~ 147 (323)
|||+|+|++|+++|++|+||||+..+ ..|+.+++.+||+|+.++... ...+.+..+.+..++. +..|++
T Consensus 78 N~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i 157 (337)
T TIGR01274 78 NQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPI 157 (337)
T ss_pred hHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999998542 579999999999999998641 1224555555555554 233665
Q ss_pred CCC--CCCCchhhhhhchHHHHHHhh---CCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---
Q 020606 148 GQF--ENPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ--- 219 (323)
Q Consensus 148 ~~~--~~~~~~~~g~~t~~~Ei~~q~---~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~--- 219 (323)
+.+ .++...+ |+.++++||++|+ +..||+||+|+|+|||++|++.++++.+|++|||||++.+++.+....
T Consensus 158 ~~~~~~~~~~~~-G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~ 236 (337)
T TIGR01274 158 PAGCSDHPLGGL-GFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILR 236 (337)
T ss_pred CCCCCCCccchh-HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHH
Confidence 554 2466665 8999999999995 347999999999999999999999999999999999999997653221
Q ss_pred CccccccccCCCC--CC--ccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeecc-HHHHHHHHHHHhhCCCC-CCCEE
Q 020606 220 PGKHLIQGIGAGV--IP--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGIS-SGAAAAAAIRVAKRPEN-AGKLI 293 (323)
Q Consensus 220 ~~~~~~~gl~~~~--~~--~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~~-~~~~v 293 (323)
...+.+++++.+. .+ +.+..++.++.+.|+|+|++++++++++++|+++||+ +|+++++++++++++.. ++++|
T Consensus 237 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~v 316 (337)
T TIGR01274 237 IARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNV 316 (337)
T ss_pred HHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEE
Confidence 1223444555432 11 3455677889999999999999999999999999997 99999999999988764 56788
Q ss_pred EEEecCCCCC
Q 020606 294 VVIFPSAGER 303 (323)
Q Consensus 294 v~v~~~gg~~ 303 (323)
|++| |||..
T Consensus 317 v~~h-tGG~~ 325 (337)
T TIGR01274 317 LYAH-LGGAP 325 (337)
T ss_pred EEEe-CCChh
Confidence 8777 77764
No 72
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=2.4e-51 Score=376.61 Aligned_cols=282 Identities=20% Similarity=0.178 Sum_probs=226.3
Q ss_pred hhhCCCCeeecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHH
Q 020606 13 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIA 88 (323)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~--S~GN~g~a~A~~a 88 (323)
+...+|||+++++|++..|.+||+|+|++||| ||||+|++.+++.+++++|. ++||++ |+||||+|+|++|
T Consensus 3 ~~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a 77 (311)
T TIGR01275 3 LIPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAA 77 (311)
T ss_pred CCCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHH
Confidence 34579999999999888889999999999998 99999999999999999984 568988 5699999999999
Q ss_pred HHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHH----hCCC-eEeeCCCCCCCchhhhhhc
Q 020606 89 ASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN----RTPN-GYILGQFENPANPEIHYET 162 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~~-~~~~~~~~~~~~~~~g~~t 162 (323)
+++|++|++|||... +..+..+++.+||+|+.++.. .+++..+.++++++ +.+. .++..++.|+.+.+ |+.+
T Consensus 78 ~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~ 155 (311)
T TIGR01275 78 KKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVE 155 (311)
T ss_pred HHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHH
Confidence 999999999999975 455677789999999999853 24444455444433 2212 34456678888886 7788
Q ss_pred hHHHHHHhhCC--CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCC---CccccccccCCC-CCCcc
Q 020606 163 TGPEIWNDSGG--KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGAG-VIPPV 236 (323)
Q Consensus 163 ~~~Ei~~q~~~--~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~ 236 (323)
+++||++|++. +||+||+|+|||||++|++.+||+.+|+++||||++..+....... ...+.+++++.+ ...+.
T Consensus 156 ~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 235 (311)
T TIGR01275 156 AVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIP 235 (311)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEE
Confidence 99999999963 7999999999999999999999999999999999987653211100 112344566543 22334
Q ss_pred ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeecc-HHHHHHHHHHHhhCCCCCCCEEEEEecCCCC
Q 020606 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGIS-SGAAAAAAIRVAKRPENAGKLIVVIFPSAGE 302 (323)
Q Consensus 237 ~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~ 302 (323)
...++.+..+.|+|+|++++++++++++|+++||+ +|+++++++++++....++++||+++ +||+
T Consensus 236 ~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~-tGG~ 301 (311)
T TIGR01275 236 ELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIH-TGGI 301 (311)
T ss_pred EECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEE-CCCc
Confidence 45667788899999999999999999999999995 99999999998876655667888888 5565
No 73
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.8e-51 Score=377.83 Aligned_cols=291 Identities=22% Similarity=0.221 Sum_probs=235.0
Q ss_pred hhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChHH
Q 020606 6 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLIELT--SGNTG 81 (323)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S--~GN~g 81 (323)
..++++++.+++|||++++.|++.+|.+||+|+|++||+ ||||+|++.+++.++.++|. ++||++| +||||
T Consensus 4 ~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g 78 (331)
T PRK03910 4 ARFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHA 78 (331)
T ss_pred CcCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHH
Confidence 345678899999999999999888889999999999997 59999999999999998884 5588774 49999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHCCCEEEEeCCCCChhH-HHHHHHHHHHhCCCeE-eeCCCC
Q 020606 82 IGLAFIAASRGYKLIIIMPSTYSI--------ERRIILRALGAEVYLADPAVGFEG-FVKKGEEILNRTPNGY-ILGQFE 151 (323)
Q Consensus 82 ~a~A~~a~~~Gi~~~vv~p~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~ 151 (323)
+|+|++|+.+|++|+||||+..++ .|+..++.+||+|+.++.+.+..+ +.+.++++.++.+..+ +..++.
T Consensus 79 ~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 158 (331)
T PRK03910 79 RQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGS 158 (331)
T ss_pred HHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCC
Confidence 999999999999999999998775 456899999999999986532323 3445556655543333 344668
Q ss_pred CCCchhhhhhchHHHHHHhhCC---CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---ccccc
Q 020606 152 NPANPEIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLI 225 (323)
Q Consensus 152 ~~~~~~~g~~t~~~Ei~~q~~~---~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~---~~~~~ 225 (323)
|+.+.+ ||.+++.||++|+++ .||+||+|+|||||++|++.+|++.+|+++||||||++++.+....+ ..+..
T Consensus 159 ~~~~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a 237 (331)
T PRK03910 159 NALGAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATA 237 (331)
T ss_pred CchhHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 888986 889999999999963 69999999999999999999999999999999999998865432111 12233
Q ss_pred cccCCC--CC--CccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeecc-HHHHHHHHHHHhhCCCC-CCCEEEEEecC
Q 020606 226 QGIGAG--VI--PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGIS-SGAAAAAAIRVAKRPEN-AGKLIVVIFPS 299 (323)
Q Consensus 226 ~gl~~~--~~--~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~~-~~~~vv~v~~~ 299 (323)
++++.+ .. .+.+..+++|+.+.|+|+|++++++++++++|+++||+ +|+++++++++++.+.. ++++||+|+ +
T Consensus 238 ~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~-t 316 (331)
T PRK03910 238 ELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIH-T 316 (331)
T ss_pred HHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEE-C
Confidence 344433 11 22355678899999999999999999999999999997 99999999998876654 567888887 7
Q ss_pred CCCC
Q 020606 300 AGER 303 (323)
Q Consensus 300 gg~~ 303 (323)
||+.
T Consensus 317 GG~~ 320 (331)
T PRK03910 317 GGAP 320 (331)
T ss_pred CChH
Confidence 7873
No 74
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.4e-50 Score=370.68 Aligned_cols=277 Identities=22% Similarity=0.250 Sum_probs=221.9
Q ss_pred CCeeecccccCCC--CceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHH
Q 020606 18 TPMVYLNNVVDGC--VARIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAAS 90 (323)
Q Consensus 18 TPl~~~~~l~~~~--g~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~--S~GN~g~a~A~~a~~ 90 (323)
|||+++++|++.+ +.+||+|+|++||| ||||+|++.+++.++.++|. ++|+++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 57999999999999 56799999999999999884 568888 689999999999999
Q ss_pred cCCeEEEEeCCCCC--------HHHHHHHHHCCCEEEEeCCCCC--hhHHHHHHH-HHHHhCCCeEee-CCC-CCCCchh
Q 020606 91 RGYKLIIIMPSTYS--------IERRIILRALGAEVYLADPAVG--FEGFVKKGE-EILNRTPNGYIL-GQF-ENPANPE 157 (323)
Q Consensus 91 ~Gi~~~vv~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~-~~~~~~~~~~~~-~~~-~~~~~~~ 157 (323)
+|++|+||||.+.+ ..|+++++.+||+|+.++.+.. ...+.+.+. ++.++.+..+++ +++ +|+.+++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999999876 4689999999999999986521 122233333 333332233443 444 4999996
Q ss_pred hhhhchHHHHHHhhCC---CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCCc---cccccccC--
Q 020606 158 IHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPG---KHLIQGIG-- 229 (323)
Q Consensus 158 ~g~~t~~~Ei~~q~~~---~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~~---~~~~~gl~-- 229 (323)
||.+++.||++|++. .||+||+|+|+|||++|++.++++.+|.++||+|+|.+++.+...... ...+.+.+
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999954 699999999999999999999999999999999999998655321110 01222223
Q ss_pred CCCCCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeec-cHHHHHHHHHHHhhCCCC-CCCEEEEEecCCC
Q 020606 230 AGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAG 301 (323)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~~-~~~~vv~v~~~gg 301 (323)
.+..+..+..+++|+.+.|+|+|++++++++++++|+++|| ++|++++++.++++.+.. ++++||+++ +||
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~-TGG 307 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIH-LGG 307 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCC
Confidence 22234556678899999999999999999999999999999 599999999999887653 567888888 544
No 75
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.2e-49 Score=388.83 Aligned_cols=293 Identities=22% Similarity=0.263 Sum_probs=231.0
Q ss_pred HhhhhC-CCCeeecccccCC----CC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 020606 11 VTELIG-HTPMVYLNNVVDG----CV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIG 83 (323)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~----~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a 83 (323)
...++| +|||+++++|++. +| .+||+|+|++|||||||+|++.+++..+.+.|+ .++|+++|+||||+|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence 346688 9999999998753 44 799999999999999999999999999999986 346889999999999
Q ss_pred HHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHCCCEEEEeCCC-CChhHHHHHH-HHHHHhCC-CeEeeCCCCCC----
Q 020606 84 LAFIAASRGYKLIIIMPST---YSIERRIILRALGAEVYLADPA-VGFEGFVKKG-EEILNRTP-NGYILGQFENP---- 153 (323)
Q Consensus 84 ~A~~a~~~Gi~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~---- 153 (323)
+|++|+++|++|+||||+. .+..|+.+|+.+||+|+.++.. ..++++.+.+ ++++++.+ .+|+++++.|+
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 9999999999999999985 3678999999999999999843 2467775544 55665433 44667777543
Q ss_pred CchhhhhhchHHHHHHhhCC-----CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccC----------C
Q 020606 154 ANPEIHYETTGPEIWNDSGG-----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG----------G 218 (323)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q~~~-----~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~----------~ 218 (323)
.++..||.++|.||++|+.. .||+||+|+|+||+++|++.+|++ .|.+|+|||||.++..... +
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g 553 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTG 553 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccC
Confidence 34556999999999999952 699999999999999999999976 6899999999998742211 1
Q ss_pred CC--------------------ccccccccCCCCCCccc-cccCcCeE--EEeCHHHHHHHHHHHHHhcCcEeeccHHHH
Q 020606 219 QP--------------------GKHLIQGIGAGVIPPVL-DVAMLDEV--ITVSSEEAIETSKLLALKEGLLVGISSGAA 275 (323)
Q Consensus 219 ~~--------------------~~~~~~gl~~~~~~~~~-~~~~~~~~--~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a 275 (323)
.+ ..+...||..+-+.+.. .....+++ +.|+|+|++++.++|++.|||+++|+||.|
T Consensus 554 ~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hA 633 (695)
T PRK13802 554 ELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHA 633 (695)
T ss_pred CccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHH
Confidence 10 00122233322222221 12334444 899999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC---CCCEEEEEecCCCCCCcchh
Q 020606 276 AAAAIRVAKRPEN---AGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 276 ~aa~~~~~~~~~~---~~~~vv~v~~~gg~~~~~~~ 308 (323)
+++++++++.... .+++||+++++.|+||+++.
T Consensus 634 va~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 634 VAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred HHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 9999999875432 25689999999999999976
No 76
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.3e-50 Score=371.07 Aligned_cols=277 Identities=39% Similarity=0.550 Sum_probs=224.6
Q ss_pred HhhhhCCCCeeecc--cccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 020606 11 VTELIGHTPMVYLN--NVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIA 88 (323)
Q Consensus 11 i~~~~~~TPl~~~~--~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a 88 (323)
|++++++|||++++ .++...+.+||+|+|++|||||||+|++.+++.+++++| .++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~-----~~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKG-----GRTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTT-----TSEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhccccc-----cceeeeeccCCceehhhhhh
Confidence 57889999999975 455566789999999999999999999999999999886 46699999999999999999
Q ss_pred HHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHh-------CCCeEeeCCCCCCCchhhhhh
Q 020606 89 ASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNR-------TPNGYILGQFENPANPEIHYE 161 (323)
Q Consensus 89 ~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 161 (323)
+.+|++|++|+|++.++.|+++++.+||+|+.++.. ++++.+.+.+++++ .++. +++++|+..+ .||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQYNNPNVI-AGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTTTSHHHH-HHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcccchhhh-hhhh
Confidence 999999999999999999999999999999999765 44444444444332 1122 6666444555 6999
Q ss_pred chHHHHHHhhCCCccE--EEEecCCchhHHHHHHHHHh--hCCCcEEEEEecCCCcccc----CCCC----ccccccccC
Q 020606 162 TTGPEIWNDSGGKVDA--FIAGIGTGGTVTGAGRFLKE--KNPNIKVYGIEPSESAVLN----GGQP----GKHLIQGIG 229 (323)
Q Consensus 162 t~~~Ei~~q~~~~~d~--vvvp~G~Gg~~aGi~~~~~~--~~~~~~vigv~~~~~~~~~----~~~~----~~~~~~gl~ 229 (323)
++++||++|++ .||+ ||+|+|+||+++|++.+++. . |++++|+|++.+++.+. .+.. ..+.+.+++
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999997 7765 99999999999999999999 7 89999999999987653 2332 123455887
Q ss_pred CCC-CCcc----ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCC---CCCEEEEEecC
Q 020606 230 AGV-IPPV----LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN---AGKLIVVIFPS 299 (323)
Q Consensus 230 ~~~-~~~~----~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~---~~~~vv~v~~~ 299 (323)
.+. .+.. +..+++++++.|+|+|+.++++++++++|+++||++|++++++++++++... ++++||+|+|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 764 2222 3445667789999999999999999999999999999999999998877643 67899999853
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.6e-49 Score=364.96 Aligned_cols=289 Identities=20% Similarity=0.226 Sum_probs=224.6
Q ss_pred hhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChH
Q 020606 5 CEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKTVLI--ELTSGNT 80 (323)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~~~~~vv--~~S~GN~ 80 (323)
++.++|+++.+++|||++++++++..|++||+|+|++||+ ||||+|++.+++.++.++|. ++|+ ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 3455799999999999999999887889999999999996 89999999999999999884 4576 4799999
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHCCCEEEEeCCCCC---hhHHHHHHHHHHHhCCCeEee-CCCCCCCc
Q 020606 81 GIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLADPAVG---FEGFVKKGEEILNRTPNGYIL-GQFENPAN 155 (323)
Q Consensus 81 g~a~A~~a~~~Gi~~~vv~p~~~~~~-~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 155 (323)
|+|+|++|+.+|++|++|||...+.. +...++.+||+++.++.... .+.+.+.++++.++.+..|++ .++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999875433 66678999999998874322 234556666666554345554 44578888
Q ss_pred hhhhhhchHHHHHHhhC---CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC-----ccccccc
Q 020606 156 PEIHYETTGPEIWNDSG---GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP-----GKHLIQG 227 (323)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~---~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~-----~~~~~~g 227 (323)
.. ||.+...||++|++ .++|+||+|+|||||++|++.++|..+|+++||||+|.+......+.. ......+
T Consensus 164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g 242 (329)
T PRK14045 164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLG 242 (329)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhC
Confidence 86 66666669999995 379999999999999999999999999999999999976322111100 1112334
Q ss_pred cCCCCCCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeec-cHHHHHHHHHHHhhCCCCCCCEEEEEecCCCC
Q 020606 228 IGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE 302 (323)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p-~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~ 302 (323)
++.+.....+....+|++..++ +|++++++++++++||++|| +||++++++++++++... +++||++| +||.
T Consensus 243 ~~~~~~~~~~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~-~~~iv~ih-tGG~ 315 (329)
T PRK14045 243 VKVKVQEPELYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGEL-GEKILFIH-TGGI 315 (329)
T ss_pred CCCCccceEecccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCC-CCCEEEEE-CCCc
Confidence 4433211122233347777777 79999999999999999999 799999999999987643 67888888 5554
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=6.9e-48 Score=379.22 Aligned_cols=291 Identities=23% Similarity=0.246 Sum_probs=227.4
Q ss_pred hhhhC-CCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 020606 12 TELIG-HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (323)
Q Consensus 12 ~~~~~-~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~ 90 (323)
..+.+ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+.+.|+ ...|+++|+||||+|+|++|++
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~ 340 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACAL 340 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHH
Confidence 34454 899999999998889999999999999999999999999999988874 3445568999999999999999
Q ss_pred cCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHH-HHHHHhCCCeEeeCCCC---C--CCchhhhh
Q 020606 91 RGYKLIIIMPSTY---SIERRIILRALGAEVYLADPA-VGFEGFVKKG-EEILNRTPNGYILGQFE---N--PANPEIHY 160 (323)
Q Consensus 91 ~Gi~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~g~ 160 (323)
+|++|+||||+.. ...|+.+|+.+||+|+.++.. ..+.++.+.+ +++..+.++.+|+.+.. + |.++..||
T Consensus 341 ~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~ 420 (610)
T PRK13803 341 FGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ 420 (610)
T ss_pred cCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence 9999999999874 356889999999999999853 2355665444 44434444667764432 2 33444589
Q ss_pred hchHHHHHHhhC----CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCC--------
Q 020606 161 ETTGPEIWNDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQP-------- 220 (323)
Q Consensus 161 ~t~~~Ei~~q~~----~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~--------~~~~~~~-------- 220 (323)
++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|+++||||||.++. ++..+.+
T Consensus 421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~ 499 (610)
T PRK13803 421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMT 499 (610)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeecccee
Confidence 999999999984 2699999999999999999999964 789999999999852 2333322
Q ss_pred ------------ccccccccCCCCCCcc---ccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhC
Q 020606 221 ------------GKHLIQGIGAGVIPPV---LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKR 285 (323)
Q Consensus 221 ------------~~~~~~gl~~~~~~~~---~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~ 285 (323)
..+.+.|++.+.+.+. +.....++++.|+|+|+++++++|++.+|++++++||+++++++++++.
T Consensus 500 ~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~ 579 (610)
T PRK13803 500 YLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKK 579 (610)
T ss_pred eeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchh
Confidence 1123345544332221 1223345789999999999999999999999999999999999987543
Q ss_pred CCCCCCEEEEEecCCCCCCcchh
Q 020606 286 PENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 286 ~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
. .++++||+++|++|+||+++.
T Consensus 580 ~-~~~~~Vvv~lsG~G~kd~~~~ 601 (610)
T PRK13803 580 F-KKKDIVIVNLSGRGDKDIPTL 601 (610)
T ss_pred c-CCCCeEEEEeCCCCcCCHHHH
Confidence 2 357889999988899999865
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-45 Score=339.24 Aligned_cols=288 Identities=24% Similarity=0.269 Sum_probs=247.7
Q ss_pred HHhhhhCCCCeeecccccCCCCc---eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 10 DVTELIGHTPMVYLNNVVDGCVA---RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~---~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
.+++..+.||+++.+++...++. ++|+|.|++|||||||||++..+++.+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 45788899999999888887773 59999999999999999999999999999883 45999999999999999
Q ss_pred HHHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHH
Q 020606 87 IAASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165 (323)
Q Consensus 87 ~a~~~Gi~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (323)
++.+.|++|+|++|.+ .+..|+.+|..+|++++.+++. ||+|.+.+++++++. ++++....-||..++ |+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~--fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCc--HHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHh
Confidence 9999999999999999 9999999999999999999987 999999999998865 567777778999997 9999999
Q ss_pred HHHHhhC-CCccEEEEecCCchhHHHHHHHHHhhCC------CcEEEEEecCCCccccCC-C----CccccccccCCCCC
Q 020606 166 EIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLNGG-Q----PGKHLIQGIGAGVI 233 (323)
Q Consensus 166 Ei~~q~~-~~~d~vvvp~G~Gg~~aGi~~~~~~~~~------~~~vigv~~~~~~~~~~~-~----~~~~~~~gl~~~~~ 233 (323)
||++|++ ..||+|+||+|+||++.|++.|+++..| .+++.+|++++..+.... + ...+.+.+|..+.
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~- 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGN- 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCC-
Confidence 9999997 4799999999999999999999998774 367889999887654321 1 2345666766653
Q ss_pred Ccccc------ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcch
Q 020606 234 PPVLD------VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 234 ~~~~~------~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~ 307 (323)
|.++. .+.....+.|||+|++++++++++++|+++||+||+++++++++.++...+++++|++.|++|.|+.++
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 54432 122345899999999999999999999999999999999999998762246689999999999999886
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-39 Score=279.63 Aligned_cols=292 Identities=22% Similarity=0.227 Sum_probs=235.7
Q ss_pred hhhhHHHHhhhhCCCCeeecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCCh
Q 020606 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQP--CSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGN 79 (323)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~--S~GN 79 (323)
.+..++|+.+..++||+.+++++++++|.+||+||||+.+ .|.||.|++++++.+|+.+| .+++||+ ..+|
T Consensus 2 ~l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g-----~dTlvT~GgiQSN 76 (323)
T COG2515 2 NLSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKG-----ADTLVTYGGIQSN 76 (323)
T ss_pred CcccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcC-----CcEEEEecccchh
Confidence 3456788999999999999999999999999999999965 47999999999999999998 6789997 4599
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCC----CHHHHHHHHHCCCEEEEeCCCCCh--hHHHHHHHHHHHhCCCeEeeCCC--C
Q 020606 80 TGIGLAFIAASRGYKLIIIMPSTY----SIERRIILRALGAEVYLADPAVGF--EGFVKKGEEILNRTPNGYILGQF--E 151 (323)
Q Consensus 80 ~g~a~A~~a~~~Gi~~~vv~p~~~----~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~--~ 151 (323)
|.+++|++|+++|++|++++.... -..++...+.+|++++.++...++ +...+..++..++.++..|+.|. .
T Consensus 77 h~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~ 156 (323)
T COG2515 77 HVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGS 156 (323)
T ss_pred HHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCc
Confidence 999999999999999999997654 223677788899999999987555 44444555555555566665553 4
Q ss_pred CCCchhhhhhchHHHHHHhhC--CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCccccCCCC---cccccc
Q 020606 152 NPANPEIHYETTGPEIWNDSG--GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQ 226 (323)
Q Consensus 152 ~~~~~~~g~~t~~~Ei~~q~~--~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~~~~~~~---~~~~~~ 226 (323)
||..- .||...+.||.+|.. -++|+|||++|||||.||+..++...+|+.+|||+...........+. ..+.+.
T Consensus 157 ~~~g~-lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~ 235 (323)
T COG2515 157 SPLGA-LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAE 235 (323)
T ss_pred Ccccc-ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 66555 499999999999986 579999999999999999999999999999999999888765432221 223333
Q ss_pred ccCCC-CCCccccccCcCeEEEeCHHHHHHHHHHHHHhcCcEeecc-HHHHHHHHHHHhhCCCCCC-CEEEEEecCCCC
Q 020606 227 GIGAG-VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGIS-SGAAAAAAIRVAKRPENAG-KLIVVIFPSAGE 302 (323)
Q Consensus 227 gl~~~-~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~-sg~a~aa~~~~~~~~~~~~-~~vv~v~~~gg~ 302 (323)
.++.. ...+.+..++....|.++.+|.+++.+.+++.||+++||. +|+++.+++++++++++++ ..|+++| +||.
T Consensus 236 ~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiH-tGG~ 313 (323)
T COG2515 236 LLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIH-TGGA 313 (323)
T ss_pred HcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEE-cCCc
Confidence 33333 2234456677777899999999999999999999999999 9999999999999888655 5567777 6664
No 81
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=258.74 Aligned_cols=291 Identities=22% Similarity=0.282 Sum_probs=221.2
Q ss_pred hhhh-CCCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 020606 12 TELI-GHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAAS 90 (323)
Q Consensus 12 ~~~~-~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~ 90 (323)
..+. .||||...++|++.+|.+||+|||++|+||++|...+...+.-|++.|+ ++.|.+...|.||.|.|.+|++
T Consensus 50 ~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~ 125 (396)
T COG0133 50 KDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAAL 125 (396)
T ss_pred HHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHH
Confidence 3344 4799999999999999999999999999999999999999999999996 4555666779999999999999
Q ss_pred cCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHH-HHHHHhCCCeEeeCC-----CCCCCchhhhh
Q 020606 91 RGYKLIIIMPSTY---SIERRIILRALGAEVYLADPA-VGFEGFVKKG-EEILNRTPNGYILGQ-----FENPANPEIHY 160 (323)
Q Consensus 91 ~Gi~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~-----~~~~~~~~~g~ 160 (323)
+|++|+|||-... ...++.+|+.+||+|+.|... ....++...| +.+...-...+|+.. .--|....-.+
T Consensus 126 fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ 205 (396)
T COG0133 126 FGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQ 205 (396)
T ss_pred hCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHH
Confidence 9999999997642 345788999999999998653 3456666665 556665556777543 22233443367
Q ss_pred hchHHHHHHhh----CCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc--------cccCCCCc-------
Q 020606 161 ETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG------- 221 (323)
Q Consensus 161 ~t~~~Ei~~q~----~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~--------~~~~~~~~------- 221 (323)
..|+.|.-+|+ +.-||+||.|+|+|++..|+...|.. .+++++||||+.+.. ++..|+++
T Consensus 206 ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~t 284 (396)
T COG0133 206 SVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKT 284 (396)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccc
Confidence 88999888776 34599999999999999999777753 367999999988753 33333331
Q ss_pred -------------cccccccCCCCCCcccc---ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhC
Q 020606 222 -------------KHLIQGIGAGVIPPVLD---VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKR 285 (323)
Q Consensus 222 -------------~~~~~gl~~~~~~~~~~---~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~ 285 (323)
-+...||+.+-+-+... ..---+++.|+|+|++++-+.|.+.|||+.-..|+-|++.++++++.
T Consensus 285 yllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~ 364 (396)
T COG0133 285 YLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPK 364 (396)
T ss_pred eeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchh
Confidence 12334555443322211 11123578999999999999999999999888899999999999876
Q ss_pred CCCCCCEEEEEecCCCCCCcchh
Q 020606 286 PENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 286 ~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
.. +++.+|+.+++.|+|++.+.
T Consensus 365 ~~-~~~~ivvnlSGRGDKDv~tv 386 (396)
T COG0133 365 LP-KDEIIVVNLSGRGDKDVFTV 386 (396)
T ss_pred cC-CCcEEEEEccCCCcccHHHH
Confidence 43 44566666766789888765
No 82
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=1.4e-33 Score=267.85 Aligned_cols=271 Identities=16% Similarity=0.131 Sum_probs=211.7
Q ss_pred CCCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChHHHHH-HHHHHHcC
Q 020606 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYS---MIKDAEDKGLITPGKTVLIELTSGNTGIGL-AFIAASRG 92 (323)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~-A~~a~~~G 92 (323)
.+||.+++. ++|+..-+++||||||||++.. ++.++++ +. ..+|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 478887642 6899888999999999999988 7888887 42 4569999999999998 78999999
Q ss_pred CeEEEEeCCC-CCHHHHHHHHHC-CCEE--EEeCCCCChhHHHHHHHHHHHhC-----CCeEeeCCCCCCCchhhhhhch
Q 020606 93 YKLIIIMPST-YSIERRIILRAL-GAEV--YLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETT 163 (323)
Q Consensus 93 i~~~vv~p~~-~~~~~~~~~~~~-Ga~v--~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~ 163 (323)
++|+|++|++ +++.++.+|..+ |++| +.++++ +|+|...++++..+. -+++-.+. .|+..++ |+.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~--fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGN--FDDCQALVKAAFNDEELKEKLKLSSANS-INIGRLL-AQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCC--HHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHHH-HHHHH
Confidence 9999999996 899999999999 9977 566665 999998888866541 14555555 4788886 99999
Q ss_pred HHHHHHhhCC---CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc---cccCCCC-----ccccccccCCCC
Q 020606 164 GPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA---VLNGGQP-----GKHLIQGIGAGV 232 (323)
Q Consensus 164 ~~Ei~~q~~~---~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~---~~~~~~~-----~~~~~~gl~~~~ 232 (323)
++|+.+|+.+ .||+|+||+|+||++.|.+.+.+...|-.|+|+++..+.. .+..|.. ..+.+.+|..+.
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~ 311 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRPTVATLSPAMDISV 311 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCChHHHHHHHcCCCccCCCCCCcCchhhcCC
Confidence 9999999964 3899999999999999999995554576799999733322 1223321 234556666552
Q ss_pred CCccccc--------------cCc------C----------------eEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHH
Q 020606 233 IPPVLDV--------------AML------D----------------EVITVSSEEAIETSKLLALKEGLLVGISSGAAA 276 (323)
Q Consensus 233 ~~~~~~~--------------~~~------~----------------~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~ 276 (323)
|.++.+ +.+ + ..+.|+|+|+.++++++++++|+++||+||+++
T Consensus 312 -psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~ 390 (462)
T PRK09225 312 -SSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAY 390 (462)
T ss_pred -CCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHH
Confidence 333221 000 0 458899999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCEEEEEecCCCCCCcchh
Q 020606 277 AAAIRVAKRPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 277 aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
+++.++.+ +++++|++.|.+|.|+.+.+
T Consensus 391 aa~~~~~~----~~~~~V~l~Ta~p~Kf~~~v 418 (462)
T PRK09225 391 KAAREYLD----PGEPGVVLSTAHPAKFPEVV 418 (462)
T ss_pred HHHHHhhC----CCCCEEEEecCCccCCHHHH
Confidence 99987632 44678999999999987754
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=1.8e-33 Score=267.27 Aligned_cols=273 Identities=16% Similarity=0.115 Sum_probs=213.1
Q ss_pred CCeeecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHHcCCCCCCCeEEEEeCCChHHHH-HHHHHHHcCC
Q 020606 18 TPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSM---IKDAEDKGLITPGKTVLIELTSGNTGIG-LAFIAASRGY 93 (323)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~---l~~a~~~g~~~~~~~~vv~~S~GN~g~a-~A~~a~~~Gi 93 (323)
+||.++.. ++|++..+++||||||||++..+ +.+++++. .+..+|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 78877653 68999999999999999998765 67776541 12467999999999999 4889999999
Q ss_pred eEEEEeCCC-CCHHHHHHHHHCCC---EEEEeCCCCChhHHHHHHHHHHHhC-----CCeEeeCCCCCCCchhhhhhchH
Q 020606 94 KLIIIMPST-YSIERRIILRALGA---EVYLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETTG 164 (323)
Q Consensus 94 ~~~vv~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~ 164 (323)
+|+|++|.+ +++.+..+|..+|+ +++.++++ ||+|...++++..+. -+++-.+. .|+..++ ++.+++
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~--fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGD--FDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCC--HHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHHHHH
Confidence 999999996 89999999999997 88888877 999999888876541 13444544 4778886 999999
Q ss_pred HHHHHhhCC----CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc---cccCCCC------ccccccccCCC
Q 020606 165 PEIWNDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA---VLNGGQP------GKHLIQGIGAG 231 (323)
Q Consensus 165 ~Ei~~q~~~----~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~---~~~~~~~------~~~~~~gl~~~ 231 (323)
+|+.+|+.+ .|++|+||+|+||++.|++.+.+...|-.++|+++..+.. .+..|.. ..+...+|..+
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999963 5899999999999999999997765677799997665442 1222321 23455666655
Q ss_pred CCCccccc---c--CcC-------------------------------eEEEeCHHHHHHHHHHHHHhcCcEeeccHHHH
Q 020606 232 VIPPVLDV---A--MLD-------------------------------EVITVSSEEAIETSKLLALKEGLLVGISSGAA 275 (323)
Q Consensus 232 ~~~~~~~~---~--~~~-------------------------------~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a 275 (323)
. |.++.+ . .-+ ..+.|+|+|+.++++.+++++|+++||+||++
T Consensus 314 ~-psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva 392 (460)
T cd01560 314 K-SSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVG 392 (460)
T ss_pred C-CCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHH
Confidence 2 433211 0 001 35889999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCCEEEEEecCCCCCCcchh
Q 020606 276 AAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA 308 (323)
Q Consensus 276 ~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~ 308 (323)
++++.++.+. +++.+|++.|.+|.|+.+..
T Consensus 393 ~aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~v 422 (460)
T cd01560 393 VRAAERVRKS---PGTPGVVLSTAHPAKFPEAV 422 (460)
T ss_pred HHHHHHHHhc---cCCCEEEEecCCcccCHHHH
Confidence 9999887654 34578999999999987654
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=238.32 Aligned_cols=298 Identities=22% Similarity=0.245 Sum_probs=222.6
Q ss_pred hhhh-CCCCeeecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHH
Q 020606 12 TELI-GHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFI 87 (323)
Q Consensus 12 ~~~~-~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~-S~GN~g~a~A~~ 87 (323)
...+ .||||+++.+|.+.++ .+||+|.|+..||||||...|....-.++.+|. ..|+|- ..|.||.|++++
T Consensus 72 Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA 146 (432)
T COG1350 72 YLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLA 146 (432)
T ss_pred HHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHH
Confidence 3445 6999999999988776 799999999999999999999999999999985 346664 559999999999
Q ss_pred HHHcCCeEEEEeCCC---CCHHHHHHHHHCCCEEEEeCCCC----------------ChhHHHHHHHHHHHhCCCeEeeC
Q 020606 88 AASRGYKLIIIMPST---YSIERRIILRALGAEVYLADPAV----------------GFEGFVKKGEEILNRTPNGYILG 148 (323)
Q Consensus 88 a~~~Gi~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~ 148 (323)
|+.+|++|+|||-.. ..+.+.-+|+.+||+|+..+.+. +..-++..|.+.+-++++..|..
T Consensus 147 ~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~l 226 (432)
T COG1350 147 AALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSL 226 (432)
T ss_pred HHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecc
Confidence 999999999999764 35677889999999999876541 11224555555555554455543
Q ss_pred CCCCCCchhhhhhchHHHHHHhh---CCCccEEEEecCCchhHHHHHHHHHhh---C-CCcEEEEEecCCCccccCCCCc
Q 020606 149 QFENPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEK---N-PNIKVYGIEPSESAVLNGGQPG 221 (323)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~q~---~~~~d~vvvp~G~Gg~~aGi~~~~~~~---~-~~~~vigv~~~~~~~~~~~~~~ 221 (323)
..--.... .|+..+|+|.-+|+ +..||++|-|||+|++++|+..-|-.. + ...++|+|+|..++.+..|...
T Consensus 227 GSVlnhvl-lhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~ 305 (432)
T COG1350 227 GSVLNHVL-LHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYR 305 (432)
T ss_pred hhHHHHHH-HHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceee
Confidence 32212233 48999999995554 567999999999999999998877422 2 2389999999999998776542
Q ss_pred cc-----------cccccCCCCCCcccc-----------------ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHH
Q 020606 222 KH-----------LIQGIGAGVIPPVLD-----------------VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSG 273 (323)
Q Consensus 222 ~~-----------~~~gl~~~~~~~~~~-----------------~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg 273 (323)
.. .+-.||...+|+.+. ..-+-+....+.+|++++++.|++.||+...|.|+
T Consensus 306 YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsa 385 (432)
T COG1350 306 YDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESA 385 (432)
T ss_pred ccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcch
Confidence 11 223455555554431 11222457789999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcchhhchhHHh
Q 020606 274 AAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRH 315 (323)
Q Consensus 274 ~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~~~~~~~~~~ 315 (323)
.|+.++++.+...+..++..|++++-+|+-.+|..-++++.+
T Consensus 386 HAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~yl~ 427 (432)
T COG1350 386 HAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDKYLE 427 (432)
T ss_pred hhHHHHHHHHHhccccCceeEEEEeccCccccchhhHHHHhh
Confidence 999999998876665555555555556666677666666643
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=229.81 Aligned_cols=292 Identities=21% Similarity=0.273 Sum_probs=208.2
Q ss_pred HHhhhh-CCCCeeecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 10 DVTELI-GHTPMVYLNNVVDGC--VARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 10 ~i~~~~-~~TPl~~~~~l~~~~--g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
.|+.++ .+|||+++++|.+.+ |.+||+|+|++|||||+|...+...+..+.+.|+ +..|.+...|.||.|+|.
T Consensus 114 eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~ 189 (477)
T KOG1395|consen 114 EIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATAT 189 (477)
T ss_pred HHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHH
Confidence 444334 689999999998876 4899999999999999999999999999999996 454555677999999999
Q ss_pred HHHHcCCeEEEEeCCC---CCHHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHH-HHHhCCCeEeeCCC-C----CCCch
Q 020606 87 IAASRGYKLIIIMPST---YSIERRIILRALGAEVYLADPAV-GFEGFVKKGEE-ILNRTPNGYILGQF-E----NPANP 156 (323)
Q Consensus 87 ~a~~~Gi~~~vv~p~~---~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~-~~~~~~~~~~~~~~-~----~~~~~ 156 (323)
+|+++|++|+|+|-.+ ..+.++.+||.+||+|+.+.... ..+++-..+-+ ......-.+|+... . -|...
T Consensus 190 a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~v 269 (477)
T KOG1395|consen 190 ACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVV 269 (477)
T ss_pred HHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHH
Confidence 9999999999999764 35678999999999999987542 23333333322 22222233443321 1 12222
Q ss_pred hhhhhchHHHHHHhh----CCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc--------ccCCCCc---
Q 020606 157 EIHYETTGPEIWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV--------LNGGQPG--- 221 (323)
Q Consensus 157 ~~g~~t~~~Ei~~q~----~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~--------~~~~~~~--- 221 (323)
.--+.+|+-|-..|. +..||.||.|+|+|++.+|+..-|..- ..+++|||+..+... +..++++
T Consensus 270 r~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~h 348 (477)
T KOG1395|consen 270 RTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFH 348 (477)
T ss_pred HHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeecccccccc
Confidence 225677887776654 456999999999999999998887643 347889998766431 2222221
Q ss_pred ----------------cc-cccccCCCCCCcccc---ccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHH
Q 020606 222 ----------------KH-LIQGIGAGVIPPVLD---VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIR 281 (323)
Q Consensus 222 ----------------~~-~~~gl~~~~~~~~~~---~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~ 281 (323)
++ ...||..+-+.+.+. ..-.-+++.|+|+|+++..+++++.|||+..+.+.-|+++..+
T Consensus 349 G~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~ 428 (477)
T KOG1395|consen 349 GVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAE 428 (477)
T ss_pred cceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHH
Confidence 11 122333322222221 1223468999999999999999999999999999999999888
Q ss_pred HhhCCCCCCCEEEEEecCCCCCCcch
Q 020606 282 VAKRPENAGKLIVVIFPSAGERYLST 307 (323)
Q Consensus 282 ~~~~~~~~~~~vv~v~~~gg~~~~~~ 307 (323)
+++.. .+++.+|+-+++.|++++..
T Consensus 429 lck~l-~~~k~ivi~~sGrGdkDvqS 453 (477)
T KOG1395|consen 429 LCKTL-PEDKVIVINISGRGDKDVQS 453 (477)
T ss_pred hcccc-CCCcEEEEEecCCCCchHHH
Confidence 77653 46678888888889887654
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=195.79 Aligned_cols=268 Identities=21% Similarity=0.243 Sum_probs=218.4
Q ss_pred hhhhCCCCeeecccccC--------CCCceEEEEeCCCCC-CCChhhHHHHHHHH-H----HHHcCCCCCCC--------
Q 020606 12 TELIGHTPMVYLNNVVD--------GCVARIAAKLEMMQP-CSSVKDRIAYSMIK-D----AEDKGLITPGK-------- 69 (323)
Q Consensus 12 ~~~~~~TPl~~~~~l~~--------~~g~~l~~K~E~~~p-tGS~K~R~a~~~l~-~----a~~~g~~~~~~-------- 69 (323)
+.++..+||++.+.+.+ ....++|+|+|++-| +||.|.||..|-+. + |++.|.+....
T Consensus 73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~ 152 (443)
T COG3048 73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE 152 (443)
T ss_pred cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence 34566789988765532 234689999999998 69999998766654 3 45666543221
Q ss_pred --------eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020606 70 --------TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (323)
Q Consensus 70 --------~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (323)
-.|...|+||.|.++....+.+|.+++|-|..++.+.|..++|..|.+|+.+..+ |..+.+.-++.++..
T Consensus 153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~D--Y~~AVeeGRk~a~~D 230 (443)
T COG3048 153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQD--YGVAVEEGRKEAESD 230 (443)
T ss_pred HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecch--hhHHHHHhhhhhccC
Confidence 1577889999999999999999999999999999999999999999999999887 888999999888888
Q ss_pred CCeEeeCCCCCCCchhhhhhchHHHHHHhhC--------CCccEEEEecCCchhHHHHHHHHHhhC-CCcEEEEEecCCC
Q 020606 142 PNGYILGQFENPANPEIHYETTGPEIWNDSG--------GKVDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSES 212 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~--------~~~d~vvvp~G~Gg~~aGi~~~~~~~~-~~~~vigv~~~~~ 212 (323)
|..||++...+.... .||...+..+-.|+. .+|-.|..|||-||.-.|++.++|... .++.++-+||..+
T Consensus 231 P~c~FiDDE~S~~LF-LGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPths 309 (443)
T COG3048 231 PNCFFIDDENSRTLF-LGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309 (443)
T ss_pred CceEEecccchhhhh-hhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCC
Confidence 889999876555566 499999999988874 246689999999999999999999765 6799999999999
Q ss_pred ccccCCCC---------------ccccccccCCCCCCccc----cccCcCeEEEeCHHHHHHHHHHHHHhcCcEeeccHH
Q 020606 213 AVLNGGQP---------------GKHLIQGIGAGVIPPVL----DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSG 273 (323)
Q Consensus 213 ~~~~~~~~---------------~~~~~~gl~~~~~~~~~----~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p~sg 273 (323)
|++.-|.. ..+.++|++.+. |+-+ ....+|+.++|+|+..++...+|++.+|+.+|||+-
T Consensus 310 PcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgR-pSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSal 388 (443)
T COG3048 310 PCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGR-PSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSAL 388 (443)
T ss_pred hHHHHhhhhccccceeeEeecccccccccceeecC-ccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhh
Confidence 98642211 346678888875 4433 456789999999999999999999999999999987
Q ss_pred HHHHHHHHHh
Q 020606 274 AAAAAAIRVA 283 (323)
Q Consensus 274 ~a~aa~~~~~ 283 (323)
+.+.+-.++.
T Consensus 389 Agm~Gp~~~~ 398 (443)
T COG3048 389 AGMAGPQRVC 398 (443)
T ss_pred hcccCcceee
Confidence 7777766554
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=92.88 E-value=0.22 Score=42.64 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=47.0
Q ss_pred EEeCHHHHHHHHHHHHHhcCcEeeccHHHHHHHHHHHhhCCCCCCCEEEEEecCCCCCCcc
Q 020606 246 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306 (323)
Q Consensus 246 ~~V~d~e~~~a~~~l~~~~gi~~~p~sg~a~aa~~~~~~~~~~~~~~vv~v~~~gg~~~~~ 306 (323)
..||++|..+++...++..+++++|++|++.-...+.+.+.. +.-..+++.+.+..|+.+
T Consensus 149 e~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~lstAh~aKFa~ 208 (266)
T KOG2616|consen 149 ERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLSTAHPAKFAE 208 (266)
T ss_pred hhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEecccChhhhhH
Confidence 568999999999999999999999999999988888776543 344566666666655543
No 88
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=90.45 E-value=2 Score=35.79 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCeE-EEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhh
Q 020606 80 TGIGLAFIAASRGYKL-IIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 158 (323)
Q Consensus 80 ~g~a~A~~a~~~Gi~~-~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
-|..+..+++.+|.++ .-+-+.+.-..-+..+...|-+|.++++. -....+.+..+.+..++.-.+..++-+....
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~- 88 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDEE- 88 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCChh-
Confidence 3678899999999887 33222233344566677788999999876 2344455566667776655543322222221
Q ss_pred hhhchHHHHHHhhC-CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020606 159 HYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (323)
Q Consensus 159 g~~t~~~Ei~~q~~-~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv 207 (323)
- ..+|++++. ..||.|++..|+.--= -.....+...+..-+++|
T Consensus 89 ~----~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 89 E----EEAIINRINASGPDIVFVGLGAPKQE-RWIARHRQRLPAGVIIGV 133 (172)
T ss_pred h----HHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE
Confidence 2 234444442 4699999999987532 222333444444445555
No 89
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=87.18 E-value=13 Score=32.05 Aligned_cols=98 Identities=21% Similarity=0.255 Sum_probs=59.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFE 151 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (323)
+|+..+|+.|..++.+....+.++.+++... +....+.++..|++++..+- ++.......+ +.-...+.+.+..
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~----~~~~~l~~al-~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY----DDPESLVAAL-KGVDAVFSVTPPS 75 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T----T-HHHHHHHH-TTCSEEEEESSCS
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc----CCHHHHHHHH-cCCceEEeecCcc
Confidence 5778899999999999988999999999776 45567778889999986653 3322222222 3332345555544
Q ss_pred CCCchhhhhhchHHHHHHhhCCCccEEE
Q 020606 152 NPANPEIHYETTGPEIWNDSGGKVDAFI 179 (323)
Q Consensus 152 ~~~~~~~g~~t~~~Ei~~q~~~~~d~vv 179 (323)
++...+ ....+ .+...+. .+.++|
T Consensus 76 ~~~~~~-~~~~l-i~Aa~~a--gVk~~v 99 (233)
T PF05368_consen 76 HPSELE-QQKNL-IDAAKAA--GVKHFV 99 (233)
T ss_dssp CCCHHH-HHHHH-HHHHHHH--T-SEEE
T ss_pred hhhhhh-hhhhH-HHhhhcc--ccceEE
Confidence 333343 22333 3334443 267665
No 90
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=83.01 E-value=12 Score=31.13 Aligned_cols=120 Identities=22% Similarity=0.202 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhh
Q 020606 80 TGIGLAFIAASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 158 (323)
Q Consensus 80 ~g~a~A~~a~~~Gi~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
-|..+.++++.+|.+..--++.. .-..-++.+...+.+|.+++.. -+...+.+..+.++.++...+..++-+...+
T Consensus 10 DG~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 10 DGIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred CcHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 35788899999998822222221 1223455566678999999876 2333344455666666655443222222222
Q ss_pred hhhchHHHHHHhhC-CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020606 159 HYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (323)
Q Consensus 159 g~~t~~~Ei~~q~~-~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv 207 (323)
. -.++++++. ..||.|+++.|+---= -.....+...+..-+++|
T Consensus 87 ~----~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 87 E----EEEIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGV 131 (171)
T ss_pred h----HHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEe
Confidence 1 122555553 4699999999986533 233334444455556666
No 91
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.19 E-value=26 Score=34.97 Aligned_cols=96 Identities=23% Similarity=0.200 Sum_probs=62.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ 149 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (323)
++++.+..|+.|+.+|..-+..|.+++++=+ ++.+.+..+.+|.+++.-+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~------------------------- 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA------------------------- 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC-------------------------
Confidence 4588899999999999988888888776632 345566666666555544322
Q ss_pred CCCCCchhhhhhchHHHHHHhhC-CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020606 150 FENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (323)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~-~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv 207 (323)
. .|++++.+ .+.|.+++.++.-....-+....++.+|+.+++..
T Consensus 470 -----~---------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 470 -----N---------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred -----C---------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 1 12223322 35677888877755544455666777888888765
No 92
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=80.98 E-value=30 Score=33.83 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCeEEEEe-----------CCCCCHHHHHHHHHCCCEEEEeCCCCC----hhHHHHHHHHHHHhCCCe-Ee
Q 020606 83 GLAFIAASRGYKLIIIM-----------PSTYSIERRIILRALGAEVYLADPAVG----FEGFVKKGEEILNRTPNG-YI 146 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~~----~~~~~~~a~~~~~~~~~~-~~ 146 (323)
.+..+|+..|+++.+.. |..+....+......|++.+....+.. .-++.+...+..++-... .|
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 34568899999988865 344556677777888999998865421 234555444443322111 11
Q ss_pred ----eCCCC-CC---CchhhhhhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020606 147 ----LGQFE-NP---ANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (323)
Q Consensus 147 ----~~~~~-~~---~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~ 212 (323)
-.+.. .. ...+ .....+.++.+.+ +.++||+.+-+|.++--++ ...|.+.|+++.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~-~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vS----r~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITE-AIALSAVEAAEKL--DAKAIVVLTESGRTARLLS----KYRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHH-HHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 00100 00 1111 2333345555665 5789999999999865544 4479999999976543
No 93
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.68 E-value=13 Score=34.44 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 66 ~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
.++.+.+|. .+|.-|...+..|+.+|.+++++.+...++.|++.++.+|++.+
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 345554554 56999999889999999976665554446788888899999853
No 94
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.96 E-value=29 Score=35.03 Aligned_cols=97 Identities=14% Similarity=0.254 Sum_probs=65.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ 149 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (323)
.+++.+..|..|+.+|..-...|++++++= .++.+.+.++.+|.+++.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDat------------------------- 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDAT------------------------- 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeCC-------------------------
Confidence 348889999999999998888899887763 3355666666666655543322
Q ss_pred CCCCCchhhhhhchHHHHHHhhC-CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020606 150 FENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE 208 (323)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~-~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~ 208 (323)
. .|++++.+ .+.|.++++++.--...-+....|+.+|+.+|+.-.
T Consensus 453 -----~---------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 453 -----Q---------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred -----C---------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 1 12333332 346778888877666656677778888888887754
No 95
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.67 E-value=33 Score=34.83 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=38.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
.+++.+..|..|+.+|..-...|++++++ +.++.+.+.++..|.+++.-|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 35888999999999999888889988776 3445667777777766655443
No 96
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=78.26 E-value=31 Score=31.79 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
....+.++.+.+|.. +|..|.+++..|+.+|.+++++ ..++.+++.++.+|++.++
T Consensus 160 ~~~~~~~g~~VlV~G-~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 160 VQAGLKKGDLVIVIG-AGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTL 215 (349)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEe
Confidence 334456666644444 4999999999999999964433 3356778888889986554
No 97
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=77.45 E-value=14 Score=33.70 Aligned_cols=45 Identities=27% Similarity=0.231 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHCCCEEEEeC
Q 020606 78 GNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (323)
Q Consensus 78 GN~g~a~A~~a~~~Gi~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (323)
+|.++|+...++++|++++++.|+.. ++..++.++..|+++..++
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 68899999999999999999999874 4455566777888887764
No 98
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=77.00 E-value=19 Score=30.17 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhh
Q 020606 81 GIGLAFIAASRGYKLIIIMPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (323)
Q Consensus 81 g~a~A~~a~~~Gi~~~vv~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (323)
|..+.++++.+|.+..--++.. .-..-++.....|..|.+++.. -+...+.++.+.++.|+.-.+.. +.+...+
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH--
Confidence 5678899999987632111111 1122344456678899999876 23344455666667666544322 2222221
Q ss_pred hhchHHHHHHhhC-CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020606 160 YETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (323)
Q Consensus 160 ~~t~~~Ei~~q~~-~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv 207 (323)
--.+|++++. ..||.++|+.|+--== -...-.+...+..-++||
T Consensus 88 ---~~~~i~~~I~~s~~dil~VglG~PkQE-~~~~~~~~~~~~~v~~gv 132 (177)
T TIGR00696 88 ---ERKAALAKIARSGAGIVFVGLGCPKQE-IWMRNHRHLKPDAVMIGV 132 (177)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCcHhH-HHHHHhHHhCCCcEEEEe
Confidence 1234555553 4699999999875421 111222333444455665
No 99
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=76.64 E-value=27 Score=32.23 Aligned_cols=57 Identities=28% Similarity=0.446 Sum_probs=42.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 121 (323)
.+.+.+|.+.+|.+.+|.-|..+-..|+.+|. +++++-. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~--s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVS--SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEec--CHHHHHHHHhcCCCEEEc
Confidence 35566778888888899999998889999998 4444322 346666889999976654
No 100
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=76.63 E-value=48 Score=28.59 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHH
Q 020606 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFV 131 (323)
Q Consensus 52 a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~ 131 (323)
+..+.....+-|. ...=|+.++--...++...++.++ ++.|=.-.-.++...+.....||+.++.++- -.+..
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~--~~ev~ 99 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL--NPEVA 99 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC--CHHHH
Confidence 3344444455553 222255677778888888888888 5555333335788888899999999998864 12333
Q ss_pred HHHHHHHHhCCCeEeeCCCCCCCc
Q 020606 132 KKGEEILNRTPNGYILGQFENPAN 155 (323)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~ 155 (323)
+. +.++ +..|++...+|.-
T Consensus 100 ~~----a~~~-~ip~~PG~~TptE 118 (211)
T COG0800 100 KA----ANRY-GIPYIPGVATPTE 118 (211)
T ss_pred HH----HHhC-CCcccCCCCCHHH
Confidence 33 3333 6666655544433
No 101
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.85 E-value=6.4 Score=32.05 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=31.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL 114 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~ 114 (323)
|....+||+|.|+|...+..|.+++++.++. ...+.++..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~ 41 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINET 41 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHh
Confidence 6678999999999999999999999987754 445555443
No 102
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.52 E-value=24 Score=31.40 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 66 ~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
.++.+ |+....|.-|..++..|+.+|.+.++++ +.++.|++..+.+|++.+.
T Consensus 119 ~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 119 LKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 45555 4445668899999999999999755554 3456788888889985433
No 103
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=75.47 E-value=26 Score=31.89 Aligned_cols=88 Identities=25% Similarity=0.304 Sum_probs=59.8
Q ss_pred eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-
Q 020606 33 RIAAKLEMMQP-----CSSVKDRIAYSMIKDAEDKGLITPGKTVLIE-LTSGNTGIGLAFIAASRGYKLIIIMPSTYSI- 105 (323)
Q Consensus 33 ~l~~K~E~~~p-----tGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~-~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~- 105 (323)
+-++|.++.-| |-|.---.|+-++.+-.+.. +|. .|+- ++.+--|+++--.|+.+|++.+-++.+...-
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD-~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGD-SVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCC-eeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 45677776444 33444446677777766533 333 3554 3445667788889999999999999887544
Q ss_pred HHHHHHHHCCCEEEEeCCC
Q 020606 106 ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 106 ~~~~~~~~~Ga~v~~~~~~ 124 (323)
.-.++++.+||+-++.+..
T Consensus 200 el~~~Lk~lGA~~ViTeee 218 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITEEE 218 (354)
T ss_pred HHHHHHHHcCCceEecHHH
Confidence 4566788999999887643
No 104
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=75.15 E-value=45 Score=31.58 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=39.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
...+.++.+.+| ..+|.-|.+++..|+.+|.+.+++. +..+.+++..+.+|++.
T Consensus 180 ~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 180 TAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCET 233 (393)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeE
Confidence 344556666445 6678899998889999998876643 22467888888899974
No 105
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.64 E-value=24 Score=24.75 Aligned_cols=49 Identities=29% Similarity=0.248 Sum_probs=37.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-----CH----HHHHHHHHCCCEEEE
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----SI----ERRIILRALGAEVYL 120 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~-----~~----~~~~~~~~~Ga~v~~ 120 (323)
++.-.+|..|.-+|.+.+.+|.+++++.+... ++ .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 67788999999999999999999999987652 11 123456677777765
No 106
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=74.30 E-value=45 Score=30.08 Aligned_cols=57 Identities=25% Similarity=0.277 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+.+.+.+|.+.+|...+|.-|.++...|+.+|.+++++. .++.+.+.++.+|++-++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 344566676656666689999999999999999855443 345678888889985444
No 107
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=73.81 E-value=43 Score=28.48 Aligned_cols=49 Identities=24% Similarity=0.193 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEE
Q 020606 49 DRIAYSMIKDAEDK---GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIII 98 (323)
Q Consensus 49 ~R~a~~~l~~a~~~---g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv 98 (323)
-+|..+.+..+.+. +.--.|+ +++.-..||.|..+|......|.+++++
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk-~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGK-TVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 36777777777655 3222333 4666777999999999999999987743
No 108
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=72.67 E-value=56 Score=31.04 Aligned_cols=126 Identities=18% Similarity=0.249 Sum_probs=67.3
Q ss_pred EEEeCCC-hHHHHHHHHHHHcCCeEEEEeCC-CCC----HHHHHHHHHCCC-EEEEeCCCCChhHHH-HHHHHHHHhCCC
Q 020606 72 LIELTSG-NTGIGLAFIAASRGYKLIIIMPS-TYS----IERRIILRALGA-EVYLADPAVGFEGFV-KKGEEILNRTPN 143 (323)
Q Consensus 72 vv~~S~G-N~g~a~A~~a~~~Gi~~~vv~p~-~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~-~~a~~~~~~~~~ 143 (323)
|+.+|+| .+...+.+...+.+.+++.|.-+ +-+ ..-.+....+|| +++.++.. ++-. +.+....+. +
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r---~ef~~~~i~~aI~a--n 75 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR---DEFAEDYIFPAIKA--N 75 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H---HHHHHHTHHHHHHT--T
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH---HHHHHHHHHHHHHH--H
Confidence 3456777 45666677777777888888732 112 334455678999 99988753 2211 222222222 3
Q ss_pred eEeeCCCCC---CCchhhhhhchHHHHHHhhCCCccEEEE-ecCCchhHHHHHHHHHhhCCCcEEEE
Q 020606 144 GYILGQFEN---PANPEIHYETTGPEIWNDSGGKVDAFIA-GIGTGGTVTGAGRFLKEKNPNIKVYG 206 (323)
Q Consensus 144 ~~~~~~~~~---~~~~~~g~~t~~~Ei~~q~~~~~d~vvv-p~G~Gg~~aGi~~~~~~~~~~~~vig 206 (323)
..|-+.|-. ...+. -..-..|++++. ..++|.- ++|.|--..=+-.+++.+.|+.+|++
T Consensus 76 A~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 76 ALYEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp --BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HHhCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 344333211 11121 123345666665 4677777 56888888888888999999888875
No 109
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=72.39 E-value=17 Score=27.96 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=19.3
Q ss_pred CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020606 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (323)
Q Consensus 174 ~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv 207 (323)
.+|.+|-++|++.++.-. ++...+.=+++-+
T Consensus 58 ~~d~vid~~g~~~~~~~~---~~~l~~~G~~v~v 88 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEA---IKLLRPGGRIVVV 88 (130)
T ss_dssp SEEEEEESSSSHHHHHHH---HHHEEEEEEEEEE
T ss_pred cceEEEEecCcHHHHHHH---HHHhccCCEEEEE
Confidence 589999999887765444 4434444455544
No 110
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=70.11 E-value=47 Score=28.87 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=37.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (323)
+..+|+..+|.-|.++|......|.+++++-...........+...|.++..+.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 62 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALT 62 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEE
Confidence 466888999999999999988899987776543222223344556677776544
No 111
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=70.06 E-value=91 Score=29.72 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=37.7
Q ss_pred CCCCCCChhhHHHHHHHHHHHHcCCCC-CCCeEEEEeCCChHHHH--HHHHHHHcCCeEEEEe
Q 020606 40 MMQPCSSVKDRIAYSMIKDAEDKGLIT-PGKTVLIELTSGNTGIG--LAFIAASRGYKLIIIM 99 (323)
Q Consensus 40 ~~~ptGS~K~R~a~~~l~~a~~~g~~~-~~~~~vv~~S~GN~g~a--~A~~a~~~Gi~~~vv~ 99 (323)
+-+|.|+.+ .....+...+.+|.+. .++..+|+..++..|.| +|.+. ..|...+++-
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 345777644 3456677777787763 34666777777777777 56566 6788766664
No 112
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=69.62 E-value=26 Score=30.24 Aligned_cols=57 Identities=30% Similarity=0.352 Sum_probs=38.8
Q ss_pred HHHHHcCCCCCCCeEEEEe-CCC---hHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCC
Q 020606 57 KDAEDKGLITPGKTVLIEL-TSG---NTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGA 116 (323)
Q Consensus 57 ~~a~~~g~~~~~~~~vv~~-S~G---N~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga 116 (323)
-.|++.|... +.+|++ |+| .+.+|||.+|++-|=..+.++|+..+ ..-.+.|..+|.
T Consensus 33 ISAlAAG~nA---kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 33 ISALAAGWNA---KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHHhccccc---eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 3456667542 334544 554 36899999999999999999998754 344555555664
No 113
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.36 E-value=40 Score=31.12 Aligned_cols=61 Identities=30% Similarity=0.407 Sum_probs=44.4
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 59 a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+++.|. .||+..-|+.-+| .|.---.+|+.+|++++++-.. +..|.+.++.+||+..+...
T Consensus 174 Lk~~g~-~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSGL-GPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcCC-CCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 345564 4887755666666 7755556899999999998533 34778889999999988754
No 114
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.69 E-value=53 Score=29.94 Aligned_cols=56 Identities=30% Similarity=0.446 Sum_probs=39.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 60 ~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
.+...+.++.+.+|...+|..|.+++..|+.+|.+++++.. +. +...++.+|++.+
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~---~~-~~~~~~~~g~~~~ 225 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG---AA-KEEAVRALGADTV 225 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC---ch-hhHHHHhcCCeEE
Confidence 34445666667666667799999999999999999655543 22 6666777888633
No 115
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=68.53 E-value=42 Score=30.44 Aligned_cols=57 Identities=26% Similarity=0.348 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+.+.+.+|.+.+|...+|--|.+++..|+.+|.++++... +..+.+.++.+|++.++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 4455667766556666789999999999999997555433 45678888889985544
No 116
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=67.77 E-value=50 Score=26.34 Aligned_cols=55 Identities=31% Similarity=0.329 Sum_probs=38.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC----HHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS----IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~----~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+.+|+..++.-|+++|..-.+.|-..++++..+.+ ...+..++..|.++..+..+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D 60 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECD 60 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccc
Confidence 45788899999999999777777766666655421 22344566778888777644
No 117
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=66.95 E-value=32 Score=26.32 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 81 g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
|..++..|+.+|.+++++.+ ++.|++.++.+||+.+....+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccc
Confidence 66777889999955555543 568899999999988877654
No 118
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=66.90 E-value=1.1e+02 Score=28.33 Aligned_cols=146 Identities=17% Similarity=0.170 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeC-CChHHHHHHHHHHHcCCeEEEEeCCCC-----------CH---HHH--H-HHHHCC
Q 020606 54 SMIKDAEDKGLITPGKTVLIELT-SGNTGIGLAFIAASRGYKLIIIMPSTY-----------SI---ERR--I-ILRALG 115 (323)
Q Consensus 54 ~~l~~a~~~g~~~~~~~~vv~~S-~GN~g~a~A~~a~~~Gi~~~vv~p~~~-----------~~---~~~--~-~~~~~G 115 (323)
..+..++++|+ +.|+... ..+.-...-..++..|+|++.+-.... .. ... + ..+.+|
T Consensus 71 ~~i~~li~~~v-----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~ 145 (336)
T PRK15408 71 QLINNFVNQGY-----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVG 145 (336)
T ss_pred HHHHHHHHcCC-----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 55667777774 3355443 333334444567778999888743210 11 111 1 122333
Q ss_pred ---CEEEEeCCCCCh---hHHHHHHHH-HHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhH
Q 020606 116 ---AEVYLADPAVGF---EGFVKKGEE-ILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTV 188 (323)
Q Consensus 116 ---a~v~~~~~~~~~---~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~ 188 (323)
.+|..+.+.... ....+-.++ +.++.++...+.........+.++ ....++++.- +++|.|+++ +...+
T Consensus 146 ~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~~~a~-~~~~~lL~~~-pdi~aI~~~--~~~~~ 221 (336)
T PRK15408 146 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSL-QTAEGILKAY-PDLDAIIAP--DANAL 221 (336)
T ss_pred CCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcHHHHH-HHHHHHHHHC-CCCcEEEEC--CCccH
Confidence 577655432111 111122222 223444544443221111222122 2444555553 678999987 33445
Q ss_pred HHHHHHHHhhCC-CcEEEEEe
Q 020606 189 TGAGRFLKEKNP-NIKVYGIE 208 (323)
Q Consensus 189 aGi~~~~~~~~~-~~~vigv~ 208 (323)
.|++.++++.+. ++.|+|..
T Consensus 222 ~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 222 PAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHhCCCCCEEEEEeC
Confidence 578889988663 56777764
No 119
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=65.73 E-value=45 Score=30.65 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=36.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 65 ~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
..++.+.+|. .+|.-|.+....|+.+|.+.++++. .++.+++..+.+||+.++
T Consensus 167 ~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 167 DLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 3355554554 5689999988899999986554443 246778888889986544
No 120
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=65.60 E-value=33 Score=31.43 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=38.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+...+.++.+.+|.. .|..|.+++..|+.+|.+++++. .++.|.+.++.+||+.+.
T Consensus 159 ~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~---~~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 159 LRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMT---RGAAARRLALALGAASAG 214 (329)
T ss_pred HhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEe---CChHHHHHHHHhCCceec
Confidence 344566776655544 58888888889999998744432 235678888999996543
No 121
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=65.18 E-value=33 Score=28.04 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCC--CCH--HHH----HHHHHCCCEEEEeC
Q 020606 78 GNTGIGLAFIAASRGYKLIIIMPST--YSI--ERR----IILRALGAEVYLAD 122 (323)
Q Consensus 78 GN~g~a~A~~a~~~Gi~~~vv~p~~--~~~--~~~----~~~~~~Ga~v~~~~ 122 (323)
+|.+.|++..++++|+.++++.|++ .+. ..+ +.....|.++..++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999999999998 455 223 33455688888874
No 122
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=65.06 E-value=16 Score=34.15 Aligned_cols=72 Identities=18% Similarity=0.089 Sum_probs=49.9
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 46 SVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 46 S~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+-+.+..+..+.... | ...++..++|..|..+|+.+-.++-.-.|++|.-+...-...+...|+++++++-+
T Consensus 24 g~~~~~fE~~~a~~~--g-----~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYF--G-----VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SHHHHHHHHHHHHHH--T-----SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CHHHHHHHHHHHHHh--C-----CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 344455555444433 3 23488889999999999888333333788889988889999999999999999854
No 123
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=65.06 E-value=48 Score=30.27 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=40.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCEEE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVY 119 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~-~Ga~v~ 119 (323)
.+.+.+|...+|...+|.-|.+++..|+.+|.++++.. .+..+.+.++. +|++-+
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDA 201 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCcee
Confidence 34566777767777779999999999999999855443 23567777776 888543
No 124
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=65.04 E-value=78 Score=29.24 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=37.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+.+.+.++.+.+|. .+|--|.+++..|+.+|.+.++.+ ..++.+++.++.+|++-+
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~ 225 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHT 225 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceE
Confidence 34445666665555 568888888888999998644444 224567777788888543
No 125
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=65.04 E-value=59 Score=26.94 Aligned_cols=105 Identities=19% Similarity=0.178 Sum_probs=65.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ 149 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (323)
.+|-.-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . + +++ +.++. +...++-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~--~--l~e-------ll~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V--S--LDE-------LLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S--S--HHH-------HHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e--e--hhh-------hcchh-hhhhhhh
Confidence 3477778899999999999999999999887754332 333444411 1 1 332 22332 3333321
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHH--HHHHHHHh
Q 020606 150 FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLKE 197 (323)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~a--Gi~~~~~~ 197 (323)
|.+.+ -..-+..|.++++ +++.+++-+|-|+++- .+..+++.
T Consensus 100 ---plt~~-T~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 100 ---PLTPE-TRGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp ---SSSTT-TTTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred ---ccccc-cceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 22332 3456677888988 5789999999999875 55555554
No 126
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=64.65 E-value=81 Score=27.69 Aligned_cols=120 Identities=19% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHC---CCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchh
Q 020606 81 GIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL---GAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPE 157 (323)
Q Consensus 81 g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 157 (323)
|.++|.+.+.+|+++.++-++..+...+..+..+ |.+|....+... + ....+.+.+..-....+.-|.+-...
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~-r--~~l~~~L~~~G~~v~~~~~Y~~~~~~- 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG-R--EVLEEKLEERGAEVREVEVYRTEPPP- 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc-h--HHHHHHHHhCCCEEEEEeeeeecCCC-
Confidence 5688889999999998876666777777777777 678877765422 1 12223333332223334444432222
Q ss_pred hhhhchHHHHHHhh-CCCccEEEEecCCchhHHHHHHHHHhhCC----CcEEEEEecC
Q 020606 158 IHYETTGPEIWNDS-GGKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIEPS 210 (323)
Q Consensus 158 ~g~~t~~~Ei~~q~-~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~----~~~vigv~~~ 210 (323)
+. ..++.+.+ ...+|.|+... +.++..+...+...++ +.+++.+-|.
T Consensus 162 --~~--~~~~~~~~~~~~~d~v~ftS--~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~ 213 (248)
T COG1587 162 --LD--EATLIELLKLGEVDAVVFTS--SSAVRALLALAPESGIEFLERKRVASIGPR 213 (248)
T ss_pred --cc--HHHHHHHHHhCCCCEEEEeC--HHHHHHHHHHccccchhHhhCceEEEecHH
Confidence 12 11111111 25789998885 4566666666655544 3566666433
No 127
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=64.57 E-value=17 Score=36.22 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=40.4
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC------------------CCHHHHHHHHHCCCEEEEe
Q 020606 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST------------------YSIERRIILRALGAEVYLA 121 (323)
Q Consensus 67 ~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~------------------~~~~~~~~~~~~Ga~v~~~ 121 (323)
+|+ .|+...+|-.|.+.|+++++.|.++++|=... ....+++.++.+|+++..-
T Consensus 136 ~g~-~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 136 TGK-RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCC-EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 444 48888999999999999999999977763221 1234667788899987653
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=64.01 E-value=35 Score=33.72 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=40.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (323)
.+|+....|.-|.+.+..|+.+|-.++++ +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 34888999999999999999999853333 446788999999999976554
No 129
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=63.63 E-value=41 Score=30.67 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=42.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHH----HHHHCCCEEEEeCCC
Q 020606 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRI----ILRALGAEVYLADPA 124 (323)
Q Consensus 68 ~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~--~~~~----~~~~~Ga~v~~~~~~ 124 (323)
+.+.+.+.-+.|-+.|+-.+|+.+|+.+++..|++..+ .-+. ..+..|+++.++...
T Consensus 153 g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~ 215 (310)
T COG0078 153 GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDP 215 (310)
T ss_pred CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCH
Confidence 34545556668999999999999999999999998533 2222 234559999988643
No 130
>PRK08703 short chain dehydrogenase; Provisional
Probab=63.47 E-value=87 Score=26.78 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=25.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~ 99 (323)
++.+|+..+|.-|.++|......|..++++-
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 4668888999999999998888888766554
No 131
>PRK06348 aspartate aminotransferase; Provisional
Probab=63.29 E-value=1.3e+02 Score=28.09 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=33.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (323)
.|+..+++.++..++..+- .+-.-.|++|.-.-..-...++.+|++++.++
T Consensus 91 ~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 91 EIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 4777888888877666543 22223556666554455667778899998875
No 132
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=62.86 E-value=1.1e+02 Score=27.99 Aligned_cols=57 Identities=28% Similarity=0.380 Sum_probs=35.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+...+.++.+.+|. .+|..|.+++..|+.+|.+.++++. .+..+.+.++.+|++.++
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVL 222 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 33445556554555 4688888888889988885444442 345566666777775443
No 133
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=62.67 E-value=71 Score=24.83 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=49.7
Q ss_pred HHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhc
Q 020606 84 LAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYET 162 (323)
Q Consensus 84 ~A~~a~~~Gi~~~vv~p~~~~~~-~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (323)
++...+..+.+..|+........ ........+.+++.-.+ .++.+++..+.+.+.+......+...|-|.... .+-.
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l~ 79 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDLE 79 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHHH
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHHH
Confidence 34556677888888875443333 33335556666666543 358888888877664433455555666666653 3333
Q ss_pred hHHHHHHhhCCCccEEEEecCCchh
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGT 187 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~ 187 (323)
-+ ++.+ ...|.|+.|+-=||-
T Consensus 80 ~A---~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 80 QA---FEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp HH---HHHT-TT-SEEEEEBTTSSE
T ss_pred HH---HHHh-ccCCEEEeeccCCCE
Confidence 33 4444 344999999987774
No 134
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=62.27 E-value=54 Score=30.52 Aligned_cols=60 Identities=28% Similarity=0.324 Sum_probs=39.9
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 020606 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (323)
Q Consensus 59 a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (323)
++..-.+.||.. |....-|-.|.....+|+.+|.+++.| +.++.|.+..+.+||+.+...
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINS 217 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEc
Confidence 344444667765 555555556666566778788777776 345678888888888777654
No 135
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=62.13 E-value=92 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~ 99 (323)
.+|+.++|.-|.++|......|.++++.-
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 48888999999999998888898866654
No 136
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=61.89 E-value=93 Score=28.92 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=36.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
...+.++.+.+|. .+|.-|..++..|+.+|.+.++++ ..++.|++..+.+|++.+
T Consensus 186 ~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 186 TAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATAT 240 (371)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceE
Confidence 3445566665554 468888888888999998534433 234567777788888543
No 137
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=61.74 E-value=67 Score=28.87 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=32.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
.+.+|...+|..|.+++..|+.+|.++++... ++.+.+.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 195 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEV 195 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEE
Confidence 45455556689999999999999987554432 2456666677887433
No 138
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=61.63 E-value=1.3e+02 Score=27.60 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+...+.++...+| ..+|..|.+++..|+.+|...++.+.. ++.+...++.+|++.+
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 4445566655445 666999999999999999876666543 4567777788888544
No 139
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=61.58 E-value=74 Score=27.62 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=38.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|..-...|..++++......+...+.+...|.++..+..+
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 71 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVD 71 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcC
Confidence 46688888999999999988889999888765521122233455567666555433
No 140
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=61.44 E-value=68 Score=29.94 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=35.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
.|+..+++..+..++..+....-+-.|++|.-+-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 37777777888766555443322224666766556667777899999999874
No 141
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=61.36 E-value=95 Score=29.60 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=46.1
Q ss_pred EEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHHHHhCCCeEeeC
Q 020606 71 VLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-GFEGFVKKGEEILNRTPNGYILG 148 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~-~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 148 (323)
.|+..++++.+..++..+-. -| =.|+++.-+-..-...++.+|++++.++-+. +++ .+...+........+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg--d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG--DSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC--CEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEEC
Confidence 47778888888877665422 23 2355555445556777888999999986531 232 122222222334566765
Q ss_pred C-CCCCCc
Q 020606 149 Q-FENPAN 155 (323)
Q Consensus 149 ~-~~~~~~ 155 (323)
| ..||..
T Consensus 219 p~p~NPTG 226 (431)
T PRK15481 219 PRAHNPTG 226 (431)
T ss_pred CCCCCCCC
Confidence 3 344443
No 142
>PRK08628 short chain dehydrogenase; Provisional
Probab=61.24 E-value=77 Score=27.46 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=39.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|..-...|.+++++..........+.++..|.++..+..+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 63 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVD 63 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEcc
Confidence 46688888899999999988888998877764433333345556667777665544
No 143
>PRK07550 hypothetical protein; Provisional
Probab=61.24 E-value=1.4e+02 Score=27.82 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=45.5
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 44 CSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
.|....|.+...... ...|.-.. ...|+..++++++..++..+- .+-.-.|++|.-.-..-...++..|++++.++.
T Consensus 67 ~G~~~lr~~ia~~~~-~~~g~~~~-~~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 67 EGLPELREAYAAHYS-RLYGAAIS-PEQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCC-cceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 477777755432221 12232111 234777777788877665443 344456777765444445567889999999875
Q ss_pred C
Q 020606 124 A 124 (323)
Q Consensus 124 ~ 124 (323)
+
T Consensus 144 ~ 144 (386)
T PRK07550 144 D 144 (386)
T ss_pred C
Confidence 3
No 144
>PRK14030 glutamate dehydrogenase; Provisional
Probab=60.96 E-value=61 Score=31.40 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 48 K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
=-||..+.+..+.+.........+|+.-..||-|..+|.....+|.+++.+..
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 34677777777654332333345688888899999999999999999888643
No 145
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=60.88 E-value=1.3e+02 Score=27.76 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=39.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HCCCEEEE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEVYL 120 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~-~~Ga~v~~ 120 (323)
.+.+.+|.+.+|...+|.-|.++...|+.+|.+++++. .+..|.+.++ .+|++-+.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 34566776766666779999999999999998754432 3456777776 68886544
No 146
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=60.80 E-value=1.3e+02 Score=27.29 Aligned_cols=55 Identities=29% Similarity=0.422 Sum_probs=34.4
Q ss_pred CCCCCC--CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHH-CCCEEEE
Q 020606 63 GLITPG--KTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPSTYSIERRIILRA-LGAEVYL 120 (323)
Q Consensus 63 g~~~~~--~~~vv~~S~GN~g~a~A~~a~~~Gi-~~~vv~p~~~~~~~~~~~~~-~Ga~v~~ 120 (323)
+.+.++ .+.+|...+|..|.++...|+.+|. +++++.+ ++.+.+.++. +|++-++
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi 206 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAI 206 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEE
Confidence 334444 4545555668888888888888887 4554432 3456666654 7875443
No 147
>PRK12743 oxidoreductase; Provisional
Probab=60.72 E-value=58 Score=28.33 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=39.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.++|......|.+++++...+.. ......++..|.++..+..+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLD 60 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEcc
Confidence 456888888999999999999999988776543322 22244566678777665443
No 148
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=60.70 E-value=79 Score=27.46 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=38.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..++.-|.++|......|.+++++-... .+...+.++..|.++..+..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~ 62 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITA 62 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEe
Confidence 5668888999999999998889999987764332 22334455667877765543
No 149
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=60.39 E-value=35 Score=29.48 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 76 S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+++.-|.++|....+.|.++++.-..... ....+..+.+|.+++.++-.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~ 54 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS 54 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc
Confidence 45778889999888889888777654322 11233445678887666653
No 150
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=60.33 E-value=42 Score=32.15 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=39.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+...+|. +|+....|.-|+.+|..++.+|.+++++ +.++.+....+.+|++++
T Consensus 197 ~~~l~Gk-tVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGK-VAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 3334454 4888999999999999999999975553 334567777888998654
No 151
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=60.23 E-value=58 Score=29.85 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=38.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+...+.++.+.+|. .+|..|.+++..|+.+|.+.++.+. .++.+++.++.+|++-+
T Consensus 154 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 154 HLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQT 209 (347)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceE
Confidence 33445566665555 5788999999999999987555442 24567777788887543
No 152
>PRK08226 short chain dehydrogenase; Provisional
Probab=59.66 E-value=73 Score=27.70 Aligned_cols=56 Identities=25% Similarity=0.141 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.++|......|.+++++-...........+...|.++..+..+
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~D 62 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVAD 62 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECC
Confidence 46688889999999999988888998776644322122233344456666554433
No 153
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=59.33 E-value=66 Score=29.35 Aligned_cols=50 Identities=30% Similarity=0.359 Sum_probs=34.8
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 67 ~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
++.+.+|. .+|..|.++...|+.+|.+.++++ ..++.+.+.++.+|++.+
T Consensus 163 ~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~ 212 (341)
T PRK05396 163 VGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRA 212 (341)
T ss_pred CCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEE
Confidence 45565554 468888888889999998544444 345667777788888543
No 154
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=59.05 E-value=82 Score=33.76 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=28.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
..|+.-.+|-.|.+.|+..++.|.+++||=..
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 45888999999999999999999999998533
No 155
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.91 E-value=53 Score=30.35 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=48.7
Q ss_pred HHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 020606 58 DAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (323)
Q Consensus 58 ~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (323)
+|-..+.+..|.+ ++....|--|...-..|+.+|-+=+|++ +..+.+++..+.+||+++.-.
T Consensus 160 HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 160 HACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeec
Confidence 5556666677754 7788999999999999999998888876 446788888888999887653
No 156
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=58.54 E-value=1.2e+02 Score=26.32 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=39.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|.+++++-. .......+.++..+.++..+..+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~D 65 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTAD 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECC
Confidence 46688999999999999998889988776532 22344455666677777655443
No 157
>PRK08589 short chain dehydrogenase; Validated
Probab=58.33 E-value=72 Score=28.13 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=37.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|--|.++|..-...|.+++++-.........+.++..|.++..+..
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHV 61 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEe
Confidence 4668888888999999998888899888775541112234455566766655443
No 158
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=58.23 E-value=1.6e+02 Score=27.55 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=42.9
Q ss_pred CCCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHH-c-CCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTVLIELTSGNTGIGLAFIAAS-R-GYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~--~~~~~~~vv~~S~GN~g~a~A~~a~~-~-Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
+.|.-+.|.+...... ...|. +.+. ..|+..+++.++..++..+-. - |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 4576677754332221 12242 2221 247777778888766654332 2 112345555444444455678899999
Q ss_pred EEeCC
Q 020606 119 YLADP 123 (323)
Q Consensus 119 ~~~~~ 123 (323)
+.++-
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 99864
No 159
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=58.23 E-value=75 Score=28.93 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=36.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+...+.++.+.+|. .+|--|.+++..|+.+|.+-++++ ..++.+++.++.+|++.++
T Consensus 157 ~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~--~~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 157 RRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGV--DPSPERLELAKALGADFVI 213 (339)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEE
Confidence 33335566665555 468888888889999998833333 2345677777888875443
No 160
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=57.82 E-value=1.1e+02 Score=26.33 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=38.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.++|......|..++++-... .....+.++..+.++..+..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D 60 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTAD 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECC
Confidence 5668888889999999998888999877765432 233345556677766655443
No 161
>PRK07109 short chain dehydrogenase; Provisional
Probab=57.40 E-value=72 Score=29.37 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=39.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|......|.+++++...... ....+.++..|+++..+..+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~D 65 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVAD 65 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEec
Confidence 456888888999999999888899987776543211 12344566778888766544
No 162
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=56.98 E-value=93 Score=26.18 Aligned_cols=59 Identities=25% Similarity=0.290 Sum_probs=36.1
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHh
Q 020606 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNR 140 (323)
Q Consensus 73 v~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 140 (323)
--.|||-.|.++|.++...|-.++++.....-+. -.+.+++.+.. .++..+...+...+
T Consensus 24 tN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~ 82 (185)
T PF04127_consen 24 TNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPS 82 (185)
T ss_dssp EES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGG
T ss_pred cCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCc
Confidence 3369999999999999999999999986642111 24667777653 45555555555444
No 163
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=56.90 E-value=1.3e+02 Score=27.23 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
.+.++.+.+|.. +|..|.+++..|+.+|.+.+++.+ +..++..++.+|++-
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 344555545544 789999999999999987554433 345666667788743
No 164
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=56.69 E-value=1e+02 Score=26.65 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=39.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|..++++...... ..-.+.++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 466899999999999999999999987766544321 22344556678887665544
No 165
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=56.41 E-value=1.7e+02 Score=27.18 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=40.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYLADP 123 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~-~Ga~v~~~~~ 123 (323)
+|+....|.-|...+..++.+|...++++ +.++.+++..+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 58889999999999999999999988888 445778888776 6776666543
No 166
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=56.36 E-value=84 Score=28.14 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCC
Q 020606 50 RIAYSMIKDAEDKGLITPGKTVLIEL-TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALG 115 (323)
Q Consensus 50 R~a~~~l~~a~~~g~~~~~~~~vv~~-S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~G 115 (323)
+|....+.++.+.|+ +.++.. --=.+..-+-.+|+++|+..+.+++.+++..++..+....
T Consensus 109 ~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 109 YGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred hhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 444555555555553 223332 1123444455555566666666666555555555554444
No 167
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=56.28 E-value=1e+02 Score=27.74 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+.+.+.++.+.+|. .+|-.|.+++..|+.+|.+.+++ ..++.+.+.++.+|+....
T Consensus 149 ~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~---~~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 149 EQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV---GRHSEKLALARRLGVETVL 204 (319)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHcCCcEEe
Confidence 44556666665555 46889999888999999984443 2235677777778876433
No 168
>PRK05854 short chain dehydrogenase; Provisional
Probab=55.91 E-value=1.2e+02 Score=27.58 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=25.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
+..|||..++--|.++|..-.+.|.+++++...
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888888888888888888889877666543
No 169
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=55.81 E-value=1.2e+02 Score=27.02 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
..+.++...+|...+|.-|.+++..|+.+|.+.+++... ..+.+.++.+|++
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 445566665555566888888888999999876665433 2344555556653
No 170
>PRK05826 pyruvate kinase; Provisional
Probab=55.77 E-value=1.6e+02 Score=28.86 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHCCCEEEEeCCCC----ChhHHHHHHHHHHHhCCCeEee
Q 020606 83 GLAFIAASRGYKLIII-----------MPSTYSIERRIILRALGAEVYLADPAV----GFEGFVKKGEEILNRTPNGYIL 147 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~ 147 (323)
-+...|+..|.++.+- .|..+.-..+...-..|++-+...++. +..++.+...+..++....++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3445689999998874 344444456666777899988776542 2235555444443322111111
Q ss_pred ----CCCCC--CCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020606 148 ----GQFEN--PANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (323)
Q Consensus 148 ----~~~~~--~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~ 212 (323)
..... ....+ .....+.++.++++ ..+.||+.+-+|.++--+ ....|.+.|+++.+...
T Consensus 343 ~~~~~~~~~~~~~~~~-~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~i----sk~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 343 NLSKHRLDRQFDRIDE-AIAMSAMYAANHLK-GVKAIVALTESGRTARLI----SRFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhhccccccchHH-HHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHH----HhhCCCCCEEEEcCCHH
Confidence 00001 11122 34445567777762 267899999999885444 44579999999976543
No 171
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=55.47 E-value=1e+02 Score=27.70 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=36.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 68 ~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+...+|...+|..|.+++..|+.+|.+++++.. ++.|.+.++.+|++-++
T Consensus 147 ~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 147 DGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 445455556699999999999999998665542 44677777889985443
No 172
>PRK06182 short chain dehydrogenase; Validated
Probab=55.38 E-value=1.4e+02 Score=26.06 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=38.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+.++|--|.++|......|.+++++... ..+++.+...+.+++.++-.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~ 56 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT 56 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC
Confidence 456888888999999999888889988776543 34455555567777776643
No 173
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.06 E-value=1.6e+02 Score=26.37 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=28.8
Q ss_pred hHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhC----CCcEEEEEe
Q 020606 163 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIE 208 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~----~~~~vigv~ 208 (323)
...+++++- +++|.|+|. +...+.|+..++++.+ .++.|+|.+
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 344555543 468988864 5666779999999876 246677764
No 174
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=54.98 E-value=56 Score=30.67 Aligned_cols=54 Identities=33% Similarity=0.375 Sum_probs=39.8
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
.+.++.+.+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++.++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 345555655555569999999999999999976553 356778888889986544
No 175
>PRK06114 short chain dehydrogenase; Provisional
Probab=54.74 E-value=1.4e+02 Score=25.77 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=38.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|..-...|.++++....... ....+.++..|.++..+..+
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 66 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAAD 66 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcC
Confidence 466888888889999999888899988776654321 22344566667776655433
No 176
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=54.53 E-value=58 Score=26.67 Aligned_cols=50 Identities=28% Similarity=0.276 Sum_probs=39.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
.|+...+||-|.+.+..+..+|.+.+++ +....+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 4777889999999999999999987775 2346777888899998888854
No 177
>PLN02740 Alcohol dehydrogenase-like
Probab=54.52 E-value=79 Score=29.57 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=35.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
...+.+|.+.+|. ..|.-|.+++..|+.+|.+-++.+ ..++.+++..+.+|++.+
T Consensus 193 ~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 247 (381)
T PLN02740 193 TANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDF 247 (381)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEE
Confidence 3445666554444 568888888888888887533333 224567777788888543
No 178
>PRK05993 short chain dehydrogenase; Provisional
Probab=54.15 E-value=1.5e+02 Score=26.03 Aligned_cols=53 Identities=26% Similarity=0.262 Sum_probs=38.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|.+++++... ..++..+...|.+++.++-.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~ 57 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA 57 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC
Confidence 456888889999999999888889987776543 34455566667777766643
No 179
>PRK06139 short chain dehydrogenase; Provisional
Probab=53.88 E-value=77 Score=29.19 Aligned_cols=55 Identities=29% Similarity=0.268 Sum_probs=38.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|--|.++|......|.+++++...... ....+.++..|+++..+..
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~ 63 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPT 63 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 466888888999999999888999987766543211 1223456678888765543
No 180
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=53.78 E-value=61 Score=30.54 Aligned_cols=55 Identities=29% Similarity=0.358 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 121 (323)
.+.++...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..++-
T Consensus 186 ~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 186 TVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 345555656666679999999999999999865543 2456777888899876653
No 181
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=53.75 E-value=97 Score=30.10 Aligned_cols=52 Identities=12% Similarity=-0.064 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 49 DRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
-+|..+.+..+.+.........+|+....||-|..+|.....+|-+++.+..
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4677777777654332222234588888899999999999999988886553
No 182
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=53.70 E-value=1.1e+02 Score=28.09 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=43.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCEEEE
Q 020606 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAEVYL 120 (323)
Q Consensus 60 ~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~-~Ga~v~~ 120 (323)
++-|..+.|.+.+|++.+|-.|.-+--.|+..|.+++-+.. +++|.+.+.. +|-+...
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 45566777888889999999998888889888988887754 3577777766 5554443
No 183
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=53.66 E-value=90 Score=27.57 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=47.4
Q ss_pred HHHHHHHHHHc--CCeEEEEeCC-CCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchh
Q 020606 81 GIGLAFIAASR--GYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPE 157 (323)
Q Consensus 81 g~a~A~~a~~~--Gi~~~vv~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 157 (323)
|..+.++++.+ |.+..- ++. +--..-++.....|-.|.+++.. -....+.++.+.++. +.-.+...+-+...+
T Consensus 69 G~gvv~~~~~~~~~~~~~R-v~G~dl~~~ll~~~~~~~~~v~llG~~--~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~ 144 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVSR-VAGADLWEALMARAGKEGTPVFLVGGK--PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPE 144 (243)
T ss_pred CHHHHHHHHHhcCCCCCCe-eChHHHHHHHHHHHHhcCCeEEEECCC--HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHH
Confidence 45667777665 433111 111 11122344445678899999876 222333344444444 332221111111121
Q ss_pred hhhhchHHHHHHhhC-CCccEEEEecCCch
Q 020606 158 IHYETTGPEIWNDSG-GKVDAFIAGIGTGG 186 (323)
Q Consensus 158 ~g~~t~~~Ei~~q~~-~~~d~vvvp~G~Gg 186 (323)
- ..+|++++. .+||.++|+.|.-=
T Consensus 145 -e----~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 145 -Q----RQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred -H----HHHHHHHHHhcCCCEEEEECCCcH
Confidence 1 234555553 46999999998754
No 184
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=53.61 E-value=62 Score=31.27 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=39.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CCHHHHHHHHHCCCEEEEe
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST-----YSIERRIILRALGAEVYLA 121 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~-----~~~~~~~~~~~~Ga~v~~~ 121 (323)
.|+...+||.|.-+|..+.++|.+++++.... .....++.++..|.+++.-
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 48889999999999999999999999987653 1233456677788887754
No 185
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=53.56 E-value=1.1e+02 Score=28.50 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=37.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
...+.++.+.+|. .+|.-|.+++..|+.+|...++.+ ..++.+++.++.+|++-++
T Consensus 180 ~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 180 TAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 3445666665555 568899888889999998433433 2345677788888885433
No 186
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=53.51 E-value=85 Score=29.15 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=37.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
...+.++.+.+|. .+|.-|.+++..|+.+|.+.++.+. .++.|++.++.+|++.++
T Consensus 181 ~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 181 TAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 3445566665555 5689999999999999985344332 245677777888886443
No 187
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=53.30 E-value=1.1e+02 Score=27.86 Aligned_cols=52 Identities=27% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
.+.++...+|...+|..|.+++..|+.+|+++++..+. +.+.+.++.+|++-
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 213 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADA 213 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 34555665666666779999999999999876555333 35556666677643
No 188
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=53.25 E-value=1.3e+02 Score=24.77 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=19.5
Q ss_pred CeEEEEeCCChHH---HHHHHHHHHcCCeEEEEe
Q 020606 69 KTVLIELTSGNTG---IGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 69 ~~~vv~~S~GN~g---~a~A~~a~~~Gi~~~vv~ 99 (323)
...+|-+..||.| .++|..-+..|++++|++
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 3556667777766 455555566799988854
No 189
>PRK07062 short chain dehydrogenase; Provisional
Probab=52.37 E-value=1.6e+02 Score=25.60 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=26.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
+..+|+..+|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 466888888999999999888889887766543
No 190
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=52.27 E-value=1.9e+02 Score=26.52 Aligned_cols=52 Identities=31% Similarity=0.432 Sum_probs=35.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi-~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
+...++.+.+|. .+|..|.+++..|+.+|. +++++. .++.+...++.+|++-
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADA 225 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCe
Confidence 333355565565 469999999999999999 544442 2456666777788743
No 191
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.21 E-value=1.8e+02 Score=26.32 Aligned_cols=52 Identities=29% Similarity=0.489 Sum_probs=37.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
..+.++...+| ..+|..|.+++..|+..|++.++.+.. ++.+.+.++.+|++
T Consensus 164 ~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~ 215 (345)
T cd08287 164 AGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGAT 215 (345)
T ss_pred cCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCc
Confidence 34455556555 557999999999999999976555543 34567777888874
No 192
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=51.87 E-value=98 Score=25.56 Aligned_cols=55 Identities=27% Similarity=0.224 Sum_probs=36.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CCHHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPST-----YSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~-----~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+.+|+...|..|..+|..-...|-.-++++... .....++.++..|++|.....+
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D 61 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD 61 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC
Confidence 347788889999999996666665445555333 2345788899999999987654
No 193
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=51.76 E-value=1.1e+02 Score=26.61 Aligned_cols=56 Identities=21% Similarity=0.053 Sum_probs=37.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|.+++++-..... ......++..|.+++.+..+
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 466888999999999999888899987666322211 12233455667777665444
No 194
>PRK07832 short chain dehydrogenase; Provisional
Probab=51.73 E-value=1.1e+02 Score=26.86 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~ 99 (323)
+.+|+.++|.-|.++|......|.+++++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 347888889999999998888898866554
No 195
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=51.39 E-value=1.6e+02 Score=26.79 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=24.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
+..-..|+.|++++..++.+|.+++++-+. +.+....+.+|++.
T Consensus 155 vlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~ 198 (296)
T PRK08306 155 VLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSP 198 (296)
T ss_pred EEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCee
Confidence 444555667777777777777655554222 23344455556543
No 196
>PRK12937 short chain dehydrogenase; Provisional
Probab=51.20 E-value=1.5e+02 Score=25.14 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=39.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|..-...|..++++.....+ ....+.++.++.++..+..+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 456888889999999999988899987776543321 12334556678887776544
No 197
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=51.17 E-value=1.2e+02 Score=25.43 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=39.0
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHH-HHHHHHHHHcCCeEEEEeCCCCC------HHHHHHHHHCCCEEE
Q 020606 57 KDAEDKGLITPGKTVLIELTSGNTG-IGLAFIAASRGYKLIIIMPSTYS------IERRIILRALGAEVY 119 (323)
Q Consensus 57 ~~a~~~g~~~~~~~~vv~~S~GN~g-~a~A~~a~~~Gi~~~vv~p~~~~------~~~~~~~~~~Ga~v~ 119 (323)
....+.|. .+.+++.-..|++ .+.|..|...|++++++.....+ ..-++.|+..|++|+
T Consensus 131 ~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 131 EYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 33445564 4556666677787 56777888899998888764322 234667777888763
No 198
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=51.08 E-value=1.5e+02 Score=25.06 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=38.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+.++|.-|.+++......|.+++++.....+ ......++..+.++..+..+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 456888899999999999888889987666644322 12233455567777766544
No 199
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=50.99 E-value=1.2e+02 Score=27.39 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=26.3
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 75 LTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 75 ~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
..+|..|.++...|+.+|.+.+++.+ ++.+.+.++.+|++-++
T Consensus 151 ~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 193 (324)
T cd08291 151 AAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVL 193 (324)
T ss_pred cCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 45677777777777777776444322 34566666667765443
No 200
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=50.97 E-value=1.1e+02 Score=28.30 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=38.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+.+.+.++.+.+|. .+|..|.+++..|+.+|...++++.. .+.+++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 34456667665555 56899999999999999853343322 4567777788888533
No 201
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.84 E-value=1.2e+02 Score=25.78 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=28.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
++.+|+.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 466888899999999999999999988877654
No 202
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.83 E-value=1.3e+02 Score=25.94 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHHCCC-EEEEeCCCCChhH
Q 020606 54 SMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI---ERRIILRALGA-EVYLADPAVGFEG 129 (323)
Q Consensus 54 ~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~---~~~~~~~~~Ga-~v~~~~~~~~~~~ 129 (323)
+++..+.+.-.++++.+ |.+-.+| .|...|..|+..| .|+.=+..+. .-.+.++.+|- +|.+.-++..
T Consensus 59 ~~vA~m~~~L~~~~g~~-VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~--- 130 (209)
T COG2518 59 HMVARMLQLLELKPGDR-VLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS--- 130 (209)
T ss_pred HHHHHHHHHhCCCCCCe-EEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc---
Confidence 34444444334556655 6665444 3556677777777 4444333322 12334667777 5655544311
Q ss_pred HHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCC
Q 020606 130 FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 184 (323)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~ 184 (323)
.||.-..|||-.... ++..++=.-+++||. .--.+|+|+|+
T Consensus 131 ------------~G~~~~aPyD~I~Vt-aaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 131 ------------KGWPEEAPYDRIIVT-AAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred ------------cCCCCCCCcCEEEEe-eccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 133333445433333 344455556788983 33468889984
No 203
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=50.81 E-value=2.6e+02 Score=27.73 Aligned_cols=82 Identities=15% Similarity=0.063 Sum_probs=42.0
Q ss_pred CCCCChhhHHHHHHHHHHHHc-CCCCCCC-eEEEEeCCChHHHHHHHHHH----Hc--CCeEEEEeCCCCCHHHHHHHHH
Q 020606 42 QPCSSVKDRIAYSMIKDAEDK-GLITPGK-TVLIELTSGNTGIGLAFIAA----SR--GYKLIIIMPSTYSIERRIILRA 113 (323)
Q Consensus 42 ~ptGS~K~R~a~~~l~~a~~~-g~~~~~~-~~vv~~S~GN~g~a~A~~a~----~~--Gi~~~vv~p~~~~~~~~~~~~~ 113 (323)
.|.|....|-+...-....+. +...+.. ..|+..+++..|..++..+- .+ |=++.+..|.-..-...-.+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 467777766543211111221 2222221 14888888999888776541 22 3333333343333333334555
Q ss_pred CCCEEEEeCC
Q 020606 114 LGAEVYLADP 123 (323)
Q Consensus 114 ~Ga~v~~~~~ 123 (323)
+|++++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 7898887764
No 204
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=50.76 E-value=1.3e+02 Score=27.39 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 65 ~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
..++.+.+|. .+|-.|.+++..|+.+|.+.++++ ..++.+.+.++.+|++
T Consensus 159 ~~~g~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 208 (340)
T TIGR00692 159 PISGKSVLVT-GAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGAT 208 (340)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCc
Confidence 3445565564 457788888888888888744444 3356777777777774
No 205
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=50.71 E-value=2.3e+02 Score=26.96 Aligned_cols=126 Identities=10% Similarity=0.059 Sum_probs=72.7
Q ss_pred EEEEeCCChHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeC
Q 020606 71 VLIELTSGNTGIGLAFIAASR--GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILG 148 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~--Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (323)
..|..|+|+-|.+..-..+++ .++++.+.-......-.++.+.++.+.+.+... . .+.++.+...+
T Consensus 4 VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~---~~~~l~~~l~~----- 71 (385)
T PRK05447 4 ITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE----E---AAKELKEALAA----- 71 (385)
T ss_pred EEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----H---HHHHHHHhhcc-----
Confidence 356678999998877666665 566666664444555667788999998888543 1 12222111101
Q ss_pred CCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhC-----------------------CCcEEE
Q 020606 149 QFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN-----------------------PNIKVY 205 (323)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~-----------------------~~~~vi 205 (323)
.+.. +..|... ..|+++. .++|.|+.+++|...+.-+..+++... ...+++
T Consensus 72 --~~~~-v~~G~~~-~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~ 145 (385)
T PRK05447 72 --AGIE-VLAGEEG-LCELAAL--PEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQIL 145 (385)
T ss_pred --CCce-EEEChhH-HHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 0000 1112111 2233332 468999999888755566666665421 246788
Q ss_pred EEecCCCcc
Q 020606 206 GIEPSESAV 214 (323)
Q Consensus 206 gv~~~~~~~ 214 (323)
-|+++.++-
T Consensus 146 PVDSEh~ai 154 (385)
T PRK05447 146 PVDSEHSAI 154 (385)
T ss_pred EECHHHHHH
Confidence 887777653
No 206
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.58 E-value=1.7e+02 Score=26.66 Aligned_cols=54 Identities=28% Similarity=0.236 Sum_probs=36.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+...+.++.+.+|. .+|..|.+++..|+.+|.+.++.+.. ++.+....+.+|++
T Consensus 160 ~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~ 213 (351)
T cd08285 160 ELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGAT 213 (351)
T ss_pred HccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCc
Confidence 34445566665555 56889999899999999865554433 34666777778874
No 207
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=50.52 E-value=1.3e+02 Score=27.26 Aligned_cols=52 Identities=29% Similarity=0.307 Sum_probs=35.4
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
.+.++...+|. .+|..|.+++..|+.+|+..++++ ..++.+...++.+|+.+
T Consensus 164 ~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 164 QVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred CCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 34455565555 578999999999999998433444 33456677777788753
No 208
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=50.51 E-value=1.3e+02 Score=26.40 Aligned_cols=56 Identities=21% Similarity=0.155 Sum_probs=38.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+..+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKAD 67 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 466888888999999999888899987776543211 12233455567777655443
No 209
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=50.13 E-value=2.2e+02 Score=26.63 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=44.7
Q ss_pred CCCChhhHHHHHHHHHHHHcCC---CCCCCeEEEEeCCChHHHHHHHHHH-HcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 43 PCSSVKDRIAYSMIKDAEDKGL---ITPGKTVLIELTSGNTGIGLAFIAA-SRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~---~~~~~~~vv~~S~GN~g~a~A~~a~-~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
+.|.-..|.+....... ..|. +.+. ..|+..+++.++..++..+- .-|=...|++|.-.-..-....+..|+++
T Consensus 63 ~~G~~~lr~aia~~~~~-~~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~ 140 (393)
T TIGR03538 63 TKGLPELRQAIARWLER-RFDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEP 140 (393)
T ss_pred CCCCHHHHHHHHHHHHH-hhCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeE
Confidence 46776777653332221 1121 2221 23777788888877665442 23433457777644444445678899999
Q ss_pred EEeCC
Q 020606 119 YLADP 123 (323)
Q Consensus 119 ~~~~~ 123 (323)
+.++-
T Consensus 141 ~~v~~ 145 (393)
T TIGR03538 141 YFLNC 145 (393)
T ss_pred EEeec
Confidence 98864
No 210
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=50.10 E-value=1.3e+02 Score=25.99 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=36.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+..+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 466888899999999999888889986655432211 11233455567777665443
No 211
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=50.08 E-value=1.3e+02 Score=27.92 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=37.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
..+.++.+.+|. .+|.-|.+++..|+.+|...++++.. ++.+++.++.+|++.+.
T Consensus 183 ~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 183 AKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 445666664554 56899999888999999843343322 35677788889985444
No 212
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=50.00 E-value=1.3e+02 Score=30.03 Aligned_cols=49 Identities=24% Similarity=0.233 Sum_probs=32.2
Q ss_pred eEEEEeCCChHH---HHHHHHHHHcCCeEEEEeCCCCCHH----HHHHHHHCCCEE
Q 020606 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPSTYSIE----RRIILRALGAEV 118 (323)
Q Consensus 70 ~~vv~~S~GN~g---~a~A~~a~~~Gi~~~vv~p~~~~~~----~~~~~~~~Ga~v 118 (323)
..+|.+..||.| ..+|......|.++.|++|...... ...+++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 456667777765 4556666677999999997753322 345567777654
No 213
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=49.93 E-value=1.4e+02 Score=24.37 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=49.6
Q ss_pred CCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC---------CCCHHHHHHHHH
Q 020606 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS---------TYSIERRIILRA 113 (323)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~---------~~~~~~~~~~~~ 113 (323)
|.--|-++.+...+.+|.+.|- +..||..|+|-++.-++-+..- .+++++|.-. ..++.-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4445678888888899998874 3434555668887665544332 3888887632 135667778888
Q ss_pred CCCEEEEe
Q 020606 114 LGAEVYLA 121 (323)
Q Consensus 114 ~Ga~v~~~ 121 (323)
.|++|..-
T Consensus 82 rGa~v~~~ 89 (186)
T COG1751 82 RGAKVLTQ 89 (186)
T ss_pred cCceeeee
Confidence 99988764
No 214
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.88 E-value=1.4e+02 Score=27.01 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=39.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|..-...|.++++.-.... .....+.++..|.+++.+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 46688888999999999988888988766543221 122345567778888776554
No 215
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.65 E-value=1.9e+02 Score=27.66 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=38.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.++|....+.|.+++++-...............+.+.+.++-.
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~ 266 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT 266 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC
Confidence 56688888899999999988889998777654322232333345567777777644
No 216
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=49.54 E-value=73 Score=31.50 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=40.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
.+++....|..|++.+..++.+|..++++ +....+++..+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 34777789999999999999999875554 2345578888899999987763
No 217
>PRK08862 short chain dehydrogenase; Provisional
Probab=49.46 E-value=1.4e+02 Score=25.65 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (323)
+..+|+..++.-|.++|......|.+++++-..... ....+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 456788888889999999888899987665433211 112334556676665543
No 218
>PRK06172 short chain dehydrogenase; Provisional
Probab=49.37 E-value=1.3e+02 Score=25.79 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=38.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+..+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACD 64 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 466888899999999999888889887766543221 12234556677777655443
No 219
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=49.34 E-value=60 Score=30.39 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=39.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.++..++|..|..++..+...+-.-.|++|..+-......++..|++++.++-+
T Consensus 48 ~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 48 KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 477778888887666544333334578888877777788888999999999754
No 220
>PRK10537 voltage-gated potassium channel; Provisional
Probab=49.28 E-value=2.4e+02 Score=26.84 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=58.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILG 148 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (323)
+++++.+..|+.|..++-.-+..|.+++++.++. .+.....|..++.-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-----~~~~~~~g~~vI~G--------------------------- 287 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-----LEHRLPDDADLIPG--------------------------- 287 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECch-----hhhhccCCCcEEEe---------------------------
Confidence 3568888889999988887777788888876541 11111112221111
Q ss_pred CCCCCCchhhhhhchHHHHHHhhC-CCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEe
Q 020606 149 QFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE 208 (323)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~q~~-~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~ 208 (323)
|+. -.|.+++.+ .+.+.+++.+..-..-.-++...|+.+|+.+++...
T Consensus 288 ---D~t---------d~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 288 ---DSS---------DSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred ---CCC---------CHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 111 124444443 346778877776555555667788888988888763
No 221
>PRK05957 aspartate aminotransferase; Provisional
Probab=49.25 E-value=1.2e+02 Score=28.42 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=30.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.|+..++++.+..++..+- +.-.-.|+++...-..-....+..|++++.++.+
T Consensus 91 ~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 91 AIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred eEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 4777777888776555332 2222334444322222234557899999988654
No 222
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=49.07 E-value=1.5e+02 Score=26.47 Aligned_cols=55 Identities=27% Similarity=0.331 Sum_probs=39.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+.+.++...+|...+|..|.+++..|+.+|.+.+++. .++.+.+.++.+|++.+.
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILI 190 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEE
Confidence 4455666666666789999999999999999876543 235666666778885433
No 223
>PRK06128 oxidoreductase; Provisional
Probab=48.98 E-value=1.9e+02 Score=25.81 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=39.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---SIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~---~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|..-...|.++++...... .......++..|.+++.+..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 114 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGD 114 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecC
Confidence 46688999999999999988889998877543221 122344566778877766544
No 224
>PRK06197 short chain dehydrogenase; Provisional
Probab=48.97 E-value=2e+02 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=25.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
+..+|+.++|--|.++|..-...|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888888888999998777889887776543
No 225
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=48.95 E-value=99 Score=29.82 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHc-CCeEEEEeCCCC--CHHHHHHHHHCCCEEEEeC
Q 020606 78 GNTGIGLAFIAASR-GYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (323)
Q Consensus 78 GN~g~a~A~~a~~~-Gi~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (323)
+|.+.|++..++.+ |++++++-|+.. +...++.++..|..+..++
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 46666666664443 666666666653 2333344444566555543
No 226
>PRK12828 short chain dehydrogenase; Provisional
Probab=48.65 E-value=1.6e+02 Score=24.72 Aligned_cols=56 Identities=21% Similarity=0.067 Sum_probs=38.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+.++|--|.++|......|.+++++.....+ ......+...+.+++.++-.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~ 64 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLV 64 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecC
Confidence 567888899999999999887889987776653322 12334455567777766543
No 227
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.57 E-value=1.7e+02 Score=24.96 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=38.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|+++|..-...|.+++++...+.. ....+.++..|.++..+..+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 466888899999999999888889887765433321 12234566678877766544
No 228
>PRK08278 short chain dehydrogenase; Provisional
Probab=48.51 E-value=1.9e+02 Score=25.45 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=38.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--------HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--------ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~--------~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|......|.+++++.....+. ...+.++..|.+++.+..+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D 70 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGD 70 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEec
Confidence 4568888889999999998889999888876543211 1123456677777665443
No 229
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=48.38 E-value=1.5e+02 Score=27.29 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHH-HhCCCeEeeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEIL-NRTPNGYILGQF 150 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 150 (323)
|+..++++.+..++..+- ..-.-.|++|.-.-..-....+.+|++++.++-+..+.-..+...+.. .......++...
T Consensus 84 I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p 162 (356)
T PRK04870 84 VLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYP 162 (356)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCC
Confidence 666777777776655432 222234556665555566678899999999875422221122222222 223356666433
Q ss_pred CCCCc
Q 020606 151 ENPAN 155 (323)
Q Consensus 151 ~~~~~ 155 (323)
.||..
T Consensus 163 ~NPtG 167 (356)
T PRK04870 163 NNPTG 167 (356)
T ss_pred CCCCC
Confidence 45433
No 230
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=48.19 E-value=57 Score=24.89 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=31.2
Q ss_pred HHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020606 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (323)
Q Consensus 164 ~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~ 212 (323)
+.++.+++ +...||+.+-+|.+. +.+....|.+.|+++.+...
T Consensus 8 a~~~A~~~--~ak~Ivv~T~sG~ta----~~isk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 8 AVELAEDL--NAKAIVVFTESGRTA----RLISKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHH--TESEEEEE-SSSHHH----HHHHHT-TSSEEEEEESSHH
T ss_pred HHHHHHhc--CCCEEEEECCCchHH----HHHHhhCCCCeEEEEcCcHH
Confidence 55777777 477899999999885 44455679999999977654
No 231
>PRK08643 acetoin reductase; Validated
Probab=47.93 E-value=1.7e+02 Score=25.18 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|..++++....... .....++..|.++..+..+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 59 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKAD 59 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3568888889999999998888998876665432211 1223345567777665543
No 232
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=47.80 E-value=75 Score=28.59 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=35.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+.+.++...+|. .+|..|.+++..|+.+|.++++ +-......+...++.+|++
T Consensus 160 ~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 160 SGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 344555565664 4688888988899999988543 3223345667777777763
No 233
>PRK07478 short chain dehydrogenase; Provisional
Probab=47.79 E-value=1.5e+02 Score=25.53 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=37.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|..-...|.+++++.....+. .....++..|.++..+..+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGD 63 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4568888889999999998888899876665332111 1233456667777655433
No 234
>PRK10490 sensor protein KdpD; Provisional
Probab=47.69 E-value=3.1e+02 Score=29.29 Aligned_cols=107 Identities=15% Similarity=0.070 Sum_probs=60.6
Q ss_pred eEEEEeCCChHH----HHHHHHHHHcCCeEEEEeCCC-----CCH-------HHHHHHHHCCCEEEEeCCCCChhHHHHH
Q 020606 70 TVLIELTSGNTG----IGLAFIAASRGYKLIIIMPST-----YSI-------ERRIILRALGAEVYLADPAVGFEGFVKK 133 (323)
Q Consensus 70 ~~vv~~S~GN~g----~a~A~~a~~~Gi~~~vv~p~~-----~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~ 133 (323)
+.+|+-|++-++ +.-+..|.+++-+.+++.=.. .+. ..++..+.+||+++.+.++ +..+.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~----dva~~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP----AEEKA 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHHH
Confidence 446665665555 333456777887777665221 111 1244567899999888764 22233
Q ss_pred HHHHHHhCC-CeEeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecC
Q 020606 134 GEEILNRTP-NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183 (323)
Q Consensus 134 a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G 183 (323)
..+++++.+ ....+....... + ...+++...+++.. +.+|..++|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 345555542 234444432221 2 23457888888886 67888777643
No 235
>PRK07324 transaminase; Validated
Probab=47.51 E-value=1.5e+02 Score=27.63 Aligned_cols=51 Identities=18% Similarity=-0.008 Sum_probs=32.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
|+..+++..+..++..+- ++-.-.|+++...-..-....+.+|++++.++-
T Consensus 83 vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 83 ILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 666777777776666443 332234555544334445667889999998864
No 236
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=47.40 E-value=2.5e+02 Score=26.37 Aligned_cols=79 Identities=11% Similarity=-0.024 Sum_probs=45.6
Q ss_pred CCCCChhhHHHHHHHHHHHHcCC--CCCCCe-EEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 42 QPCSSVKDRIAYSMIKDAEDKGL--ITPGKT-VLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 42 ~ptGS~K~R~a~~~l~~a~~~g~--~~~~~~-~vv~~S~GN~g~a~A~~a~~-~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
.+.|....|-+.... ....+. +.+ .. .|+..+++.+|..++..+-. ..---.|++|.-.-+.-...++.+|++
T Consensus 67 ~~~G~~~lR~aia~~--~~~~~~~~~~~-~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~ 143 (396)
T PRK09257 67 PIEGLAAYRQAVQEL--LFGADSPALAA-GRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLE 143 (396)
T ss_pred CCCCCHHHHHHHHHH--hcCCCCccccc-CeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCc
Confidence 346777788654332 222221 122 22 13667778888887763322 121235666665555567778889999
Q ss_pred EEEeCC
Q 020606 118 VYLADP 123 (323)
Q Consensus 118 v~~~~~ 123 (323)
++.++-
T Consensus 144 ~v~v~~ 149 (396)
T PRK09257 144 VKTYPY 149 (396)
T ss_pred EEEEec
Confidence 998863
No 237
>PRK08303 short chain dehydrogenase; Provisional
Probab=47.05 E-value=1.7e+02 Score=26.47 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=42.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-----------CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHH
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-----------SIERRIILRALGAEVYLADPA-VGFEGFVKKGEE 136 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~-----------~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~ 136 (323)
+..+|+..++--|.++|..-...|.+++++-.... -....+.++..|.+++.+..+ ...++..+...+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46688888888999999988889998777654321 112234556677776655433 123334444444
Q ss_pred HHHh
Q 020606 137 ILNR 140 (323)
Q Consensus 137 ~~~~ 140 (323)
..+.
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 4333
No 238
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=46.98 E-value=1.1e+02 Score=26.41 Aligned_cols=52 Identities=21% Similarity=0.074 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 50 RIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 50 R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
||..+.+..+.+.-.......+|+.-.-||-|+.+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5666666665443212222345888889999999999999999888887754
No 239
>PLN00175 aminotransferase family protein; Provisional
Probab=46.82 E-value=2.6e+02 Score=26.52 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=32.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
|+..+++.++..++..+- +.-.-.|++++-.-..-...++..|++++.++-
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 666777778776666543 333344555554444556677889999998864
No 240
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.82 E-value=1.8e+02 Score=25.68 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
.+.++...+|...+|..|.++...|+..|.+++.+.+. +.+.+.++.+|++-+
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEV 191 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEE
Confidence 34455565555566899999999999999885554332 355566666776433
No 241
>PRK08068 transaminase; Reviewed
Probab=46.63 E-value=2.5e+02 Score=26.22 Aligned_cols=78 Identities=13% Similarity=-0.037 Sum_probs=42.9
Q ss_pred CCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 020606 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (323)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~-~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (323)
.|.-..|.+....... ..|. +.+. ..|+..++|..+..++.. ...+-.-.|++|.-+-..-...++..|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~-~~i~it~G~~~~l~~~~~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPE-TEVAILFGGKAGLVELPQ-CLMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-ccEEEcCCcHHHHHHHHH-HhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 5666666553332211 2242 2222 136667777777666533 2333334566666544444556778999999886
Q ss_pred CC
Q 020606 123 PA 124 (323)
Q Consensus 123 ~~ 124 (323)
-+
T Consensus 147 ~~ 148 (389)
T PRK08068 147 LI 148 (389)
T ss_pred cc
Confidence 53
No 242
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=46.21 E-value=1.6e+02 Score=27.16 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=32.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.|+..+++..+..++..+- ++-.-.|+++.-.-..-....+..|++++.++.+
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 3666777677766555432 3323345555544344555678899999988654
No 243
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=46.11 E-value=1.2e+02 Score=27.81 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHH-HHHCCCEEEEe
Q 020606 77 SGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRII-LRALGAEVYLA 121 (323)
Q Consensus 77 ~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~-~~~~Ga~v~~~ 121 (323)
.+|.+++++..++++|++++++.|+... ...++. .+..|.++...
T Consensus 161 ~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~ 208 (304)
T PRK00779 161 GNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVT 208 (304)
T ss_pred CCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEE
Confidence 4677777777777777777777776532 222222 34566666554
No 244
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=45.84 E-value=86 Score=28.91 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=35.5
Q ss_pred EEEEeCCChHHHHHHHHHHH----cCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020606 71 VLIELTSGNTGIGLAFIAAS----RGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~----~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (323)
.+++.-+=|++-|+|++|.. .|=..++|+|.+- .+.....|.++.+.+.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHcC
Confidence 47777888888888876643 3444666777651 2222223677888888888774
No 245
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.80 E-value=1.7e+02 Score=24.96 Aligned_cols=56 Identities=27% Similarity=0.167 Sum_probs=37.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~-~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.++|......|..++++..... .....+.++..|+++..+..+
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAAN 62 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 46688888899999999988888987666543321 122334456668877655433
No 246
>PRK12831 putative oxidoreductase; Provisional
Probab=45.68 E-value=98 Score=30.06 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=38.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---C--CHHHHHHHHHCCCEEEEe
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPST---Y--SIERRIILRALGAEVYLA 121 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~---~--~~~~~~~~~~~Ga~v~~~ 121 (323)
.|+.-.+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++.-
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 48889999999999999999999988887643 1 223445566778877654
No 247
>PLN02623 pyruvate kinase
Probab=45.66 E-value=2.7e+02 Score=28.05 Aligned_cols=123 Identities=16% Similarity=0.064 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCeEEEEe---------CCC--CCHHHHHHHHHCCCEEEEeCCCC----ChhHHHHHHHHHHHhCCCe-E
Q 020606 82 IGLAFIAASRGYKLIIIM---------PST--YSIERRIILRALGAEVYLADPAV----GFEGFVKKGEEILNRTPNG-Y 145 (323)
Q Consensus 82 ~a~A~~a~~~Gi~~~vv~---------p~~--~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~-~ 145 (323)
.-+...|+..|.++.+.. |.. +.-..+......|++.+....+. +..++.+...+.+++-... .
T Consensus 366 k~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~ 445 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLP 445 (581)
T ss_pred HHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcc
Confidence 345567999999998643 322 22346777778899999887542 1234544444433221111 1
Q ss_pred e---e---CCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020606 146 I---L---GQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (323)
Q Consensus 146 ~---~---~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~ 212 (323)
+ . ....+....+ -....+.++.+.++ .. ||+.+-+|.++--+ ....|.+.|+++.+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~-~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~l----Sr~RP~~pI~avT~~~~ 510 (581)
T PLN02623 446 EGTTPPNLGQAFKNHMSE-MFAFHATMMANTLG--TS-IIVFTRTGFMAILL----SHYRPSGTIFAFTNEKR 510 (581)
T ss_pred cchhhhhhccccCCChHH-HHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHH----HhhCCCCCEEEECCCHH
Confidence 1 0 0001111122 34444567777764 34 99999898886544 44579999999976543
No 248
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=45.55 E-value=1.7e+02 Score=24.93 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|......|..+++....... +.....++..|.++..+..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 466888889999999999888889887664432211 11234455677788766544
No 249
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=45.32 E-value=39 Score=28.12 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=31.0
Q ss_pred hchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020606 161 ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (323)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv 207 (323)
...+.++.+| +..||.|+.-.|=|-+ ..+|+.+|++++++-
T Consensus 54 ~~a~~~L~~~-Gf~PDvI~~H~GWGe~-----Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 54 ARAARQLRAQ-GFVPDVIIAHPGWGET-----LFLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHHc-CCCCCEEEEcCCcchh-----hhHHHhCCCCcEEEE
Confidence 3344455555 5679999988887765 489999999999887
No 250
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=45.32 E-value=87 Score=27.70 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=22.3
Q ss_pred eEEEEeCCChHH---HHHHHHHHHcCCeEEEEeCCC
Q 020606 70 TVLIELTSGNTG---IGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 70 ~~vv~~S~GN~g---~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
+.+|.+..||.| .++|...+..|.++.||+++.
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 97 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ 97 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC
Confidence 445666666654 555666666799999999653
No 251
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=45.26 E-value=57 Score=26.58 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=36.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+|...+|+.|..++......|.+++++++...+..+ ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 577889999999999999999999999987543333 45666665543
No 252
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=45.24 E-value=1.2e+02 Score=26.92 Aligned_cols=52 Identities=13% Similarity=-0.056 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 49 DRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
-||..+.+..+.+.-.......+|+.-..||-|..+|.....+|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677777777654432333234588888999999999999999988887664
No 253
>PLN02342 ornithine carbamoyltransferase
Probab=45.04 E-value=1.2e+02 Score=28.43 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHCCC-EEEEe
Q 020606 77 SGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGA-EVYLA 121 (323)
Q Consensus 77 ~GN~g~a~A~~a~~~Gi~~~vv~p~~~--~~~~~~~~~~~Ga-~v~~~ 121 (323)
..|.+.+++.+++++|+.++++.|+.. +...++..+..|. ++..+
T Consensus 203 ~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 203 GNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT 250 (348)
T ss_pred CchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE
Confidence 357778888888888888888888763 3334444555564 55444
No 254
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=44.86 E-value=1.7e+02 Score=24.93 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=38.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.+++......|.+++++.....+ ......++..+.++..+..+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 63 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVD 63 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 466888899999999999888889887776544221 22334456667766655443
No 255
>PRK05876 short chain dehydrogenase; Provisional
Probab=44.77 E-value=1.9e+02 Score=25.61 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=36.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+||..+|--|.++|..-...|.+++++...... ......++..|.++..+..+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~D 63 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCD 63 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 466888889999999999888899986665432111 11233455667777655443
No 256
>PRK09134 short chain dehydrogenase; Provisional
Probab=44.67 E-value=2.1e+02 Score=24.75 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (323)
++.+|+..+|.-|.++|......|..++++....... .-...++..|.++..+..
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQA 66 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4668899999999999999999998887765432211 122334455777765543
No 257
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.56 E-value=2e+02 Score=24.46 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=37.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|..|.+++......|.+++++.....+ ......++..|.+++.+..+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATAD 64 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECC
Confidence 356888889999999999888889987776543221 11233445567777665443
No 258
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=44.32 E-value=1.9e+02 Score=26.03 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=35.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
..+.++...+|. ..|..|.+++..|+.+|++++++.+ +..+++.++.+|++-++
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 345555565565 4566899888899999988665543 34556666777765443
No 259
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=44.29 E-value=74 Score=30.47 Aligned_cols=50 Identities=24% Similarity=0.263 Sum_probs=35.2
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 66 ~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
..|+ +|+....|+-|+.+|..++.+|.+++++=. .+.+....+..|+++.
T Consensus 193 l~Gk-~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~---dp~r~~~A~~~G~~v~ 242 (406)
T TIGR00936 193 IAGK-TVVVAGYGWCGKGIAMRARGMGARVIVTEV---DPIRALEAAMDGFRVM 242 (406)
T ss_pred CCcC-EEEEECCCHHHHHHHHHHhhCcCEEEEEeC---ChhhHHHHHhcCCEeC
Confidence 3444 488899999999999999999998665422 2234445556687553
No 260
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=44.05 E-value=2.5e+02 Score=25.41 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=27.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
++..-..|+.|.++|..++.+|.+++++-+. ..+......+|.+
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 4666677888888888888888766555332 2333334444543
No 261
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=44.04 E-value=1.6e+02 Score=26.50 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=35.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+...+.++...+| ...|..|.+++..|+..|++.+++.+. ..+.+.++.+|++
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 213 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGAD 213 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCc
Confidence 4445556656555 457888888888999999876655443 2466666777764
No 262
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=44.01 E-value=1.3e+02 Score=28.05 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=30.0
Q ss_pred ChHHHHHHHH-HHHcCCeEEEEeCCCC--CHHHHHHHHHCCCEEEEeC
Q 020606 78 GNTGIGLAFI-AASRGYKLIIIMPSTY--SIERRIILRALGAEVYLAD 122 (323)
Q Consensus 78 GN~g~a~A~~-a~~~Gi~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~ 122 (323)
+|.+.+++.. ++.+|++++++.|+.. +..-++.++..|.++..++
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 5777887764 5566888888888763 4444555666677776654
No 263
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=43.96 E-value=1.7e+02 Score=27.18 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
..+.++...+| ...|..|.+++..|+.+|...++++ +.+..|.+.++.+|+.
T Consensus 172 ~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~ 223 (375)
T cd08282 172 AGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAI 223 (375)
T ss_pred cCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCe
Confidence 34455556555 5668889998889999997544433 3356777888888874
No 264
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.90 E-value=1.7e+02 Score=25.87 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=35.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
.+.++...++...+|..|.+++..|+.+|.+.+++.+. .+.+.++.+|++
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 34555665555667999999999999999986665532 555666777763
No 265
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=43.88 E-value=2e+02 Score=24.45 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=37.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|.-|.++|......|..++++..... ....+..++..|.++.....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEG 60 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEc
Confidence 45688899999999999988889988766543221 11234455567887765443
No 266
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=43.75 E-value=1.3e+02 Score=22.32 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=25.7
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 73 v~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+.+..|+.|+.++..-+..+.+++++-. .+.+.+.++..|.+++.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~ 46 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIY 46 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEE
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhccccccc
Confidence 4456677777777776665556655532 24455555555554444
No 267
>PLN02702 L-idonate 5-dehydrogenase
Probab=43.72 E-value=1.5e+02 Score=27.25 Aligned_cols=56 Identities=27% Similarity=0.370 Sum_probs=37.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
...+.++...+|. ..|.-|.++...|+.+|.+.++.+.. +..+.+.++.+|++...
T Consensus 176 ~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 176 RANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 3344555565555 56888888888899999876555533 46677777788876543
No 268
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=43.69 E-value=2.7e+02 Score=25.80 Aligned_cols=86 Identities=16% Similarity=0.258 Sum_probs=51.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCCh-hHHHHHHHHHHHhCCCeEe
Q 020606 70 TVLIELTSGNTGIGLAFIAASR--GYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF-EGFVKKGEEILNRTPNGYI 146 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~--Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 146 (323)
.+++.+.+|..|.-.| .++.+ |=++.++.-..-.+.-.+..+.|||+|..++.+.+- -.-++....+++..++.++
T Consensus 69 ~tf~isgsGh~g~E~a-l~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vf 147 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAA-LVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVF 147 (385)
T ss_pred ceEEEecCCcchHHHH-HHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEE
Confidence 4577777776665533 34443 444444444444666778888999999988655211 1123344555666677888
Q ss_pred eCCCCCCCch
Q 020606 147 LGQFENPANP 156 (323)
Q Consensus 147 ~~~~~~~~~~ 156 (323)
+-+.+....+
T Consensus 148 v~hgdsSTgV 157 (385)
T KOG2862|consen 148 VTHGDSSTGV 157 (385)
T ss_pred EEecCccccc
Confidence 7776554443
No 269
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=43.64 E-value=30 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=23.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
..|++..+|-++.+ |..|+.+|+|+++=++.
T Consensus 32 ~Giv~~~Gg~~SH~-aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 32 AGIVTEEGGPTSHA-AILARELGIPAIVGVGD 62 (80)
T ss_dssp SEEEESSSSTTSHH-HHHHHHTT-EEEESTTT
T ss_pred EEEEEEcCCccchH-HHHHHHcCCCEEEeecc
Confidence 34888887777665 88899999999996653
No 270
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=43.57 E-value=1.5e+02 Score=26.88 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=32.5
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 66 ~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
.++...+|. .+|..|.+++..|+.+|.+.+++. ..+..|....+.+|++
T Consensus 162 ~~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 210 (341)
T cd05281 162 VSGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGAD 210 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcc
Confidence 345555564 458888888889999988544444 3355666776777764
No 271
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=43.49 E-value=2.1e+02 Score=25.50 Aligned_cols=47 Identities=28% Similarity=0.355 Sum_probs=32.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
..+|...+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 4455556699999999999999998544433 3456667777887443
No 272
>PRK12939 short chain dehydrogenase; Provisional
Probab=43.49 E-value=1.9e+02 Score=24.60 Aligned_cols=56 Identities=18% Similarity=0.082 Sum_probs=36.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|.+++++...... ......++..+.++..+..+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAAD 64 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 466888889999999999888889887666322111 11233445567666655443
No 273
>PRK05866 short chain dehydrogenase; Provisional
Probab=43.16 E-value=1.7e+02 Score=26.20 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=36.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|......|.+++++...... ....+.+...|.++..+..+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~D 97 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCD 97 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 355888888999999999888889988777554211 11223344456666555433
No 274
>PRK06181 short chain dehydrogenase; Provisional
Probab=43.11 E-value=1.8e+02 Score=25.09 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=36.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+.+|+..+|.-|.+++......|.+++++...... ....+.++..|.++..+..+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 58 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTD 58 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 45888888999999999888899887776543211 11233455567777655443
No 275
>PRK07035 short chain dehydrogenase; Provisional
Probab=42.93 E-value=2e+02 Score=24.64 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=35.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (323)
+..+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALA 63 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 456888899999999999888899987766543211 122333445566665544
No 276
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=42.89 E-value=98 Score=23.70 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=31.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+.++.+..-.+...+--.|..+|++.+++.|....+.-++.++..|.+++
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVI 106 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEE
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEE
Confidence 44556666667777777777788888888888766777777777777655
No 277
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=42.81 E-value=1.9e+02 Score=24.84 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=35.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (323)
++.+|+..+|.-|.++|......|.+++++...... ..-...++..|.++..+.
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALA 66 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 566888889999999999888889987776543211 112333555676555544
No 278
>PRK06949 short chain dehydrogenase; Provisional
Probab=42.57 E-value=1.7e+02 Score=25.21 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
++.+|+..+|.-|.++|....+.|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 566888899999999999988899987766543
No 279
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=42.50 E-value=3.3e+02 Score=26.43 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=51.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHCCCEEEEeCCCC-ChhHHHHHHHHHH
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALGAEVYLADPAV-GFEGFVKKGEEIL 138 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~-~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~ 138 (323)
..|...... .|+..++..++..+ .++.+=-+ -+|++..-+-..-++.++.+|++++.++.+. +.+ .+...+..
T Consensus 148 ~~g~~~~~~-~IiiT~G~q~al~l--~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~--~e~le~~~ 222 (459)
T COG1167 148 RRGISCEPE-QIVITSGAQQALDL--LLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGID--PEALEEAL 222 (459)
T ss_pred hcCCccCcC-eEEEeCCHHHHHHH--HHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCC--HHHHHHHH
Confidence 455433323 36666666666653 34443223 5666666566778889999999999987642 222 11222222
Q ss_pred Hh-CCCeEeeCC-CCCCCch
Q 020606 139 NR-TPNGYILGQ-FENPANP 156 (323)
Q Consensus 139 ~~-~~~~~~~~~-~~~~~~~ 156 (323)
++ .+...|+.| +.||...
T Consensus 223 ~~~~~k~~y~~P~~qNPtG~ 242 (459)
T COG1167 223 AQWKPKAVYVTPTFQNPTGV 242 (459)
T ss_pred hhcCCcEEEECCCCCCCCCC
Confidence 22 346677666 4666553
No 280
>PLN02527 aspartate carbamoyltransferase
Probab=42.45 E-value=89 Score=28.62 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHc-CCeEEEEeCCCC--CHHHHHHHHHCCCEEEEe
Q 020606 79 NTGIGLAFIAASR-GYKLIIIMPSTY--SIERRIILRALGAEVYLA 121 (323)
Q Consensus 79 N~g~a~A~~a~~~-Gi~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~ 121 (323)
|.+.+++.+++++ |+.++++.|+.. +....+.++..|.++..+
T Consensus 164 rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~ 209 (306)
T PLN02527 164 RTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEES 209 (306)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEE
Confidence 4566666665554 666666666652 333334444455555544
No 281
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=42.24 E-value=1.5e+02 Score=27.01 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 78 GNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 78 GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
+|..+|++..++++|+.++++.|+.
T Consensus 158 ~~v~~Sl~~~l~~~g~~v~~~~P~~ 182 (304)
T TIGR00658 158 NNVCNSLMLAGAKLGMDVVVATPEG 182 (304)
T ss_pred CchHHHHHHHHHHcCCEEEEECCch
Confidence 5666666666666666666666654
No 282
>PRK08912 hypothetical protein; Provisional
Probab=42.10 E-value=2.9e+02 Score=25.71 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=43.9
Q ss_pred CCCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 020606 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (323)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 121 (323)
+.|....|.+...... ...|. ..+ ...|+..+++.++..++..+-. +-.-.|++|...-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~-~~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDP-ETEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCC-cccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 4566667755432221 11232 222 1147777888888776665432 222345555554445566778999999887
Q ss_pred CC
Q 020606 122 DP 123 (323)
Q Consensus 122 ~~ 123 (323)
+-
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 283
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=42.09 E-value=2.2e+02 Score=25.27 Aligned_cols=51 Identities=29% Similarity=0.324 Sum_probs=32.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga 116 (323)
+.+.++...+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|+
T Consensus 134 ~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~ 184 (323)
T cd05282 134 LKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGA 184 (323)
T ss_pred ccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCC
Confidence 334555555555566888888888888888886655433 234555566665
No 284
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=41.89 E-value=2.9e+02 Score=25.69 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=53.2
Q ss_pred CCCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 020606 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (323)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 121 (323)
+.|....|-+...... ...|. +.+. ..|+..+++..+..++..+- +.-.-.|+++.-+-..-...++..|++++.+
T Consensus 67 ~~G~~~lr~aia~~~~-~~~g~~~~~~-~~I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v 143 (388)
T PRK07366 67 FHGTLDFREAAAQWYE-QRFGLAVDPE-TEVLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPSHAGGVYLAGGQIYPM 143 (388)
T ss_pred CCCCHHHHHHHHHHHH-HhhCCcCCCc-CeEEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHhcCCEEEEE
Confidence 3566666654332211 12242 2222 13776777788776665432 1211234444433334456667899999988
Q ss_pred CCCC--ChhHHHHHHHHHHHhCCCeEeeCCCCCCCch
Q 020606 122 DPAV--GFEGFVKKGEEILNRTPNGYILGQFENPANP 156 (323)
Q Consensus 122 ~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (323)
+-+. .+....+...+........+|+....||...
T Consensus 144 ~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~ 180 (388)
T PRK07366 144 PLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTA 180 (388)
T ss_pred ECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCc
Confidence 6431 2221122222222222356776654555443
No 285
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=41.73 E-value=2.4e+02 Score=25.20 Aligned_cols=52 Identities=33% Similarity=0.464 Sum_probs=35.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
..+.++.+.+|...+|..|.+++..++..|.+++++... ..+.+.++.+|++
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCc
Confidence 445566666666777889999999999999887666432 3444555556653
No 286
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=41.68 E-value=1.8e+02 Score=26.95 Aligned_cols=52 Identities=12% Similarity=-0.108 Sum_probs=31.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
|+..+++.++..++..+- +.-.-.|+++.-.-..-....+.+|.+++.++.+
T Consensus 91 i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 91 IILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 666666677766554332 2222344555444445566778899999988654
No 287
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.65 E-value=2.8e+02 Score=25.36 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=48.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe-CCCCCHHHHHHHHHCCCEEE--EeCCCCChhHHHHHHHHHHHhC
Q 020606 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIM-PSTYSIERRIILRALGAEVY--LADPAVGFEGFVKKGEEILNRT 141 (323)
Q Consensus 68 ~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~-p~~~~~~~~~~~~~~Ga~v~--~~~~~~~~~~~~~~a~~~~~~~ 141 (323)
|+..+||.+++-.|+++|.--++.|-+.++.= -.....+..+.++..| ++. .|+-+ ..++..+.+.+..++.
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis-~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDIS-DREEIYRLAKKVKKEV 112 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCC-CHHHHHHHHHHHHHhc
Confidence 35678888888999999998888787444432 2223455667777667 444 45543 4677777777776665
No 288
>PRK07791 short chain dehydrogenase; Provisional
Probab=41.62 E-value=2.3e+02 Score=25.13 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=42.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---------C-CHHHHHHHHHCCCEEEEeCCC-CChhHHHHHHHHH
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST---------Y-SIERRIILRALGAEVYLADPA-VGFEGFVKKGEEI 137 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~---------~-~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 137 (323)
+..+|+..++--|.++|......|..++++.... . .....+.++..|.++..+..+ ...++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 5668888888999999998888998877764321 0 112234455567777655433 1233333334444
Q ss_pred HHh
Q 020606 138 LNR 140 (323)
Q Consensus 138 ~~~ 140 (323)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 333
No 289
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=41.62 E-value=2.6e+02 Score=25.03 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=35.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
.+.+.++...+|....|..|.+++..|+.+|++.+.+.+ +..+...++.+|++
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~ 187 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAW 187 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCC
Confidence 344556656555556788999988999999988655533 34455566677764
No 290
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=41.60 E-value=2.2e+02 Score=26.26 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
..+.++.+.+|. .+|.-|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++.+
T Consensus 182 ~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 182 LKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHV 235 (365)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEE
Confidence 345555565555 56888888888999999864444433 3567777777777433
No 291
>PRK09275 aspartate aminotransferase; Provisional
Probab=41.53 E-value=3.7e+02 Score=26.76 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=54.7
Q ss_pred CCCCChhhHHHHHHHHHHHHc-CCCCC-CCeEEEEeCCChHHHHHHHHH----HHcCCeEEEEeCCCCCHHHHH--HHHH
Q 020606 42 QPCSSVKDRIAYSMIKDAEDK-GLITP-GKTVLIELTSGNTGIGLAFIA----ASRGYKLIIIMPSTYSIERRI--ILRA 113 (323)
Q Consensus 42 ~ptGS~K~R~a~~~l~~a~~~-g~~~~-~~~~vv~~S~GN~g~a~A~~a----~~~Gi~~~vv~p~~~~~~~~~--~~~~ 113 (323)
.|.|.-..|-+...-....+. +...+ +...|+...++..+...+..+ ..++-.-.|++|.-.-..=.. .+..
T Consensus 132 ~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g 211 (527)
T PRK09275 132 VPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPR 211 (527)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcC
Confidence 356778888664431111221 22112 123477788888888877765 233333344555443333333 3444
Q ss_pred CCCEEEEeCCC--CChhHHHHHHHHHHHhCCCeEeeCCCCCCCc
Q 020606 114 LGAEVYLADPA--VGFEGFVKKGEEILNRTPNGYILGQFENPAN 155 (323)
Q Consensus 114 ~Ga~v~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (323)
+|.+++.++.+ .+|+-..+...++........++...+||..
T Consensus 212 ~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG 255 (527)
T PRK09275 212 YDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPS 255 (527)
T ss_pred CCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcC
Confidence 56777777532 2233223333333333335566542244443
No 292
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=41.44 E-value=86 Score=29.48 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=36.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.++..++|..+..++..+-..+-.-.|++|..+-......+...|++++.++-+
T Consensus 48 ~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 48 KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 467677777776665544323333467777776666677778889999999754
No 293
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=41.28 E-value=2.5e+02 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=17.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
|+..+.|.+|.-.+-.++++|.+++++-.+
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 555555566666666666666665555544
No 294
>PRK12744 short chain dehydrogenase; Provisional
Probab=41.25 E-value=2e+02 Score=24.86 Aligned_cols=56 Identities=29% Similarity=0.192 Sum_probs=36.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CH----HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SI----ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~-~~----~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|..-...|.+++++..... .. ...+.++..|.++..+..+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 69 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQAD 69 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecC
Confidence 45688888899999999988888999666653221 11 2233455567777655443
No 295
>PRK06701 short chain dehydrogenase; Provisional
Probab=41.24 E-value=2.6e+02 Score=24.91 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=38.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|......|.+++++...... ......++..|.++..+..+
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 104 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGD 104 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEcc
Confidence 456888889999999999888889988777554322 22334456667777665443
No 296
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=41.20 E-value=1.4e+02 Score=29.74 Aligned_cols=46 Identities=17% Similarity=0.027 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHcC-CeEEEEeCCCC--CHHHHHHHHHCCCEEEEeCC
Q 020606 78 GNTGIGLAFIAASRG-YKLIIIMPSTY--SIERRIILRALGAEVYLADP 123 (323)
Q Consensus 78 GN~g~a~A~~a~~~G-i~~~vv~p~~~--~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+|.+.|++..++.+| ++++++.|... ++..+..++..|+.+..++.
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d 234 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSS 234 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 799999999999998 99999999874 44555667778988877653
No 297
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.18 E-value=2.3e+02 Score=24.27 Aligned_cols=55 Identities=27% Similarity=0.320 Sum_probs=37.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
..+|+..+|.-|.++|..-...|.+++++.....+ ....+.++..+.++..+..+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPAD 60 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEec
Confidence 45888899999999999888889887776543222 22344455567766665443
No 298
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=41.12 E-value=1.6e+02 Score=29.97 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=39.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHCCCEEEEe
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYLA 121 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~---------~---------~~~~~~~~~~Ga~v~~~ 121 (323)
..|+.-.+|-.|.+.|+..++.|.+++||-.... + ...++.++.+|.+++.-
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 4588889999999999999999999988853321 1 12456778888887653
No 299
>PRK06194 hypothetical protein; Provisional
Probab=41.06 E-value=2.5e+02 Score=24.65 Aligned_cols=56 Identities=29% Similarity=0.272 Sum_probs=37.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|.+++++-..... ......+...|.++..+..+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD 63 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECC
Confidence 456888889999999999888889987665432211 12233444557777666544
No 300
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=41.06 E-value=2e+02 Score=26.54 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=35.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.|+..+++..+..++..+-.-| . .|++|.-+-..-...++.+|++++.++-+
T Consensus 76 ~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 127 (360)
T PRK07392 76 WILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPLP 127 (360)
T ss_pred hEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEecc
Confidence 3777788888887666442223 3 45566655566677788899999988643
No 301
>PLN02827 Alcohol dehydrogenase-like
Probab=41.02 E-value=2.2e+02 Score=26.54 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+.+.++.+.+|. .+|--|.+++..|+.+|.+.++.+.. ++.|.+..+.+|++-+
T Consensus 189 ~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 189 ADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 445566664554 46888888888899999865544422 4567777788888543
No 302
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=40.98 E-value=43 Score=26.67 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=26.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
++.+.+|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4567889999999999999999999998874
No 303
>PRK06836 aspartate aminotransferase; Provisional
Probab=40.92 E-value=3.1e+02 Score=25.68 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=32.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++.+
T Consensus 99 i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~ 150 (394)
T PRK06836 99 IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD 150 (394)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC
Confidence 666677777766555332 2223345555544344455678899999998754
No 304
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=40.89 E-value=1.8e+02 Score=24.83 Aligned_cols=48 Identities=33% Similarity=0.476 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 66 ~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
.++...++...++ .|.+++..++..|.+.+++.+. +.+.+.++.+|++
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 180 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGAD 180 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCc
Confidence 4555655655555 9999999999999776655433 3455555666654
No 305
>PRK07677 short chain dehydrogenase; Provisional
Probab=40.86 E-value=2.2e+02 Score=24.48 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (323)
++.+|+..+|.-|.++|......|..++++-...... .....++..+.+++.+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQM 57 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4568888889999999998888899766654332111 122234445666655543
No 306
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=40.82 E-value=2.4e+02 Score=24.38 Aligned_cols=55 Identities=20% Similarity=0.133 Sum_probs=38.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|.-|.++|......|..+++......+ ......++..|.++..+..
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 64 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKG 64 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 466888889999999999888999887776554322 1223445666777765543
No 307
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=40.77 E-value=2e+02 Score=27.23 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=45.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
...+..+||-.+..+|+-+-..|=.-.|++|.-+-......+...||+.+++|-+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 4577788888888888875457777789999998888899999999999999865
No 308
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.71 E-value=2.1e+02 Score=27.69 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=45.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH----HHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEee
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRI----ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL 147 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~----~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (323)
.+..+||-.+..++..+- ++-.-+|++|...-..... .++.+|+++.+++...+.+ .. ++...++....|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~-~l---~~~I~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD-EI---VALANDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH-HH---HHhCCcCCeEEEE
Confidence 566888888888877643 4444567777664332222 2678999999997531111 22 2222222356666
Q ss_pred CCCCCCC
Q 020606 148 GQFENPA 154 (323)
Q Consensus 148 ~~~~~~~ 154 (323)
....||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 6556665
No 309
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=40.63 E-value=2.2e+02 Score=25.53 Aligned_cols=56 Identities=32% Similarity=0.381 Sum_probs=40.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH--HHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE--RRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~--~~~~~~~~Ga~v~~~~~~ 124 (323)
.+.|||..|+.-|.++|..-++.|.+++++-.....-. ..+.-+.+|.+|...+-+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECc
Confidence 56799999999999999999999999999987643221 222234467777666544
No 310
>PRK07806 short chain dehydrogenase; Provisional
Probab=40.60 E-value=2.3e+02 Score=24.14 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~--~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.+++......|.+++++....... .-...++..|.++..+..+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGAD 64 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcC
Confidence 4568888889999999998888899887765432211 1123345557666555433
No 311
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.58 E-value=85 Score=28.43 Aligned_cols=55 Identities=38% Similarity=0.483 Sum_probs=40.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HHHHHCCC-E-EEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERR-IILRALGA-E-VYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~-~~~~~~Ga-~-v~~~~~ 123 (323)
+..+||..|+--|.++|+.-...|.+.++++.......++ +.++..|+ + ++....
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~ 70 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQL 70 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeC
Confidence 4668888888899999999999999999998776555555 66665554 3 454443
No 312
>PRK07454 short chain dehydrogenase; Provisional
Probab=40.46 E-value=2e+02 Score=24.43 Aligned_cols=55 Identities=22% Similarity=0.194 Sum_probs=36.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+.++|.-|.++|......|.+++++...... ......++..+.++..+..
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSI 62 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 355788888999999999998899987776543211 1122334455666655543
No 313
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=40.44 E-value=1.9e+02 Score=25.82 Aligned_cols=50 Identities=28% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCCCC-eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 65 ITPGK-TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 65 ~~~~~-~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+.++. +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 45555 55555566999999999999999886555432 3445666777774
No 314
>CHL00194 ycf39 Ycf39; Provisional
Probab=40.39 E-value=1.2e+02 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=27.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
+.+|+..+|.-|..++......|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 34788899999999999888889998888754
No 315
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=40.39 E-value=1.1e+02 Score=27.99 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 78 GNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 78 GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
.|.+.|++.+++++|++++++.|..
T Consensus 157 ~~v~~S~~~~~~~~g~~v~~~~P~~ 181 (302)
T PRK14805 157 NNVTHSLMYGAAILGATMTVICPPG 181 (302)
T ss_pred CccHHHHHHHHHHcCCEEEEECCch
Confidence 3445555555556666666665554
No 316
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=40.24 E-value=2.2e+02 Score=24.20 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=36.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|..-...|..++++....... .....++..+.++..+..+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d 60 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4568888999999999998888898877765432111 1223345556666655544
No 317
>PRK08017 oxidoreductase; Provisional
Probab=40.12 E-value=2.4e+02 Score=24.16 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=37.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+.+|+..+|.-|.++|......|.+++++... ..+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 45788888999999999888889887665433 3455556667887777654
No 318
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=40.06 E-value=3.2e+02 Score=25.93 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=16.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~ 99 (323)
|..-.+|+.+.+++.+++..|..+.+++
T Consensus 3 iliiG~G~~~~~l~~~~~~~~~~~~~~~ 30 (423)
T TIGR00877 3 VLVIGNGGREHALAWKLAQSPLVKYVYV 30 (423)
T ss_pred EEEECCChHHHHHHHHHHhCCCccEEEE
Confidence 3334556667777777777666555554
No 319
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=40.01 E-value=59 Score=27.11 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=25.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
|..-.+|..|+++|..+...|++++++-+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 4556779999999999999999999997643
No 320
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=39.65 E-value=3.4e+02 Score=29.46 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=27.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
.|+.-.+|-.|.+.|++.++.|.+++||=..
T Consensus 432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 4888899999999999999999999998543
No 321
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=39.51 E-value=2.4e+02 Score=23.94 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=37.9
Q ss_pred CeEEEEeCCChHH-HHHHHHHHHcCCeEEEEeCCCCC--------HHHHHHHHHCCCEEEEe
Q 020606 69 KTVLIELTSGNTG-IGLAFIAASRGYKLIIIMPSTYS--------IERRIILRALGAEVYLA 121 (323)
Q Consensus 69 ~~~vv~~S~GN~g-~a~A~~a~~~Gi~~~vv~p~~~~--------~~~~~~~~~~Ga~v~~~ 121 (323)
.+.+++.-..|.+ .+.|..|..+|++++|+-....+ ..-++.|+..|++|+..
T Consensus 143 ~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~ 204 (212)
T PRK11609 143 TELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTL 204 (212)
T ss_pred CEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEH
Confidence 3546666777777 67888999999999998764422 22466777788888754
No 322
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=39.48 E-value=2.4e+02 Score=24.06 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=38.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|..-...|.+++++.....+. .....++..+.++..+..+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 61 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMD 61 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4568888899999999998888899887776543222 2233455567776555443
No 323
>PRK07890 short chain dehydrogenase; Provisional
Probab=39.47 E-value=2.3e+02 Score=24.35 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=36.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|+++|......|.+++++-...... .....++..|.++..+..+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTD 62 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecC
Confidence 5668889999999999999889999877665332111 1223344456666555433
No 324
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=39.44 E-value=2.4e+02 Score=23.90 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=70.2
Q ss_pred eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHH
Q 020606 33 RIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---SIERRI 109 (323)
Q Consensus 33 ~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~---~~~~~~ 109 (323)
++|...|+-++| | |-...+....++ +.++ +.+..-.+|.-+.++-++ +.+-.+.++-=+.. -..-.+
T Consensus 7 ~~F~~~~~~p~T---K-~EIRal~ls~L~---~~~g-~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 7 ELFERDEGGPMT---K-EEIRALTLSKLR---PRPG-DRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIER 76 (187)
T ss_pred hhhccCCCCCCc---H-HHHHHHHHHhhC---CCCC-CEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHH
Confidence 456666666555 4 222222222232 2233 347776666666666665 44444444432321 122233
Q ss_pred HHHHCCCE-EEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhC---CCccEEEEecCCc
Q 020606 110 ILRALGAE-VYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG---GKVDAFIAGIGTG 185 (323)
Q Consensus 110 ~~~~~Ga~-v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~---~~~d~vvvp~G~G 185 (323)
..+.+|.+ +.++.++. .++ ...+. .++..|+.... + -.+|++-+. ..-..+|+-+-+=
T Consensus 77 N~~~fg~~n~~vv~g~A--p~~---L~~~~--~~daiFIGGg~---~--------i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 77 NAARFGVDNLEVVEGDA--PEA---LPDLP--SPDAIFIGGGG---N--------IEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred HHHHhCCCcEEEEeccc--hHh---hcCCC--CCCEEEECCCC---C--------HHHHHHHHHHHcCcCCeEEEEeecH
Confidence 45566653 44444431 111 11110 24555554321 1 122222221 2234566666666
Q ss_pred hhHHHHHHHHHhhCCCcEEEEEecCCCc
Q 020606 186 GTVTGAGRFLKEKNPNIKVYGIEPSESA 213 (323)
Q Consensus 186 g~~aGi~~~~~~~~~~~~vigv~~~~~~ 213 (323)
-+++-+...+++.+-. .++-++...+.
T Consensus 139 E~~~~a~~~~~~~g~~-ei~~v~is~~~ 165 (187)
T COG2242 139 ETLAKALEALEQLGGR-EIVQVQISRGK 165 (187)
T ss_pred HHHHHHHHHHHHcCCc-eEEEEEeecce
Confidence 6677777777776654 66666655443
No 325
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=39.37 E-value=1.9e+02 Score=25.86 Aligned_cols=36 Identities=36% Similarity=0.450 Sum_probs=26.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIII 98 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv 98 (323)
..+.++...+|...+|..|.+++..|+.+|.+++++
T Consensus 158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 158 AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 445566665555556999999999999999876554
No 326
>PRK14031 glutamate dehydrogenase; Provisional
Probab=39.09 E-value=1.5e+02 Score=28.79 Aligned_cols=53 Identities=15% Similarity=-0.031 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 49 DRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
-||..+.+..+.+.........+|+.-..||-|..+|.....+|-+++++-+.
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 46777777776543222333456888888999999999999999999988773
No 327
>PRK05867 short chain dehydrogenase; Provisional
Probab=38.96 E-value=2.4e+02 Score=24.29 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=35.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|.-|.++|..-...|.+++++-..... ......++..|.++..+..
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 65 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCC 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456888888999999999888889887665432211 1122344556766655543
No 328
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=38.94 E-value=2.5e+02 Score=24.01 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=36.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+.+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+..+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 57 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLD 57 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 34788888999999999888999887665433211 12334556678777665443
No 329
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.84 E-value=1.7e+02 Score=21.99 Aligned_cols=93 Identities=22% Similarity=0.139 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC--CCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhh
Q 020606 82 IGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP--AVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIH 159 (323)
Q Consensus 82 ~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (323)
..+|.+.++.|.++.++=.......-.+.++....+++.+.. ...+....+.++...+..++...+ ..|
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv---------~GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV---------VGG 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE---------EEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE---------EEC
Confidence 455667778899888763333335556778888899987754 222344555555533333332222 123
Q ss_pred -hhchHHHH-HHhhCCCccEEEEecCC
Q 020606 160 -YETTGPEI-WNDSGGKVDAFIAGIGT 184 (323)
Q Consensus 160 -~~t~~~Ei-~~q~~~~~d~vvvp~G~ 184 (323)
+.+..+|. ++.. ...|+++..=|-
T Consensus 89 ~~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 89 PHATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp SSSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred CchhcChHHHhccC-cCcceecCCChH
Confidence 23445543 4432 357888776553
No 330
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=38.79 E-value=1.6e+02 Score=25.95 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=28.8
Q ss_pred HHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecC
Q 020606 110 ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183 (323)
Q Consensus 110 ~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G 183 (323)
.+...||++.+.-.. +....+.++++++. +..++.|.|- .+-+ .-..+.-+|-++. +++|.+|-+++
T Consensus 27 ~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV-~~d~-~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 27 ALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDV-TNDE-SIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCC-CCHH-HHHHHHHHHHHhh-CcccEEEEEec
Confidence 344566666665322 12334455555554 2233323221 1111 2233333333333 45666666654
No 331
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=38.78 E-value=2.2e+02 Score=26.55 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=34.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
.+.+.++.+.+|. .+|.-|.+++..|+.+|+.-++++. ....+++.++.+|++
T Consensus 185 ~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 185 TAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 3445556554454 6788888888889999984334332 234667777778874
No 332
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.74 E-value=2e+02 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.8
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC
Q 020606 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 69 ~~~vv~~S~--GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
+..+|+..+ +.-|.++|....+.|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 455777766 68999999988889998776643
No 333
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.60 E-value=2.1e+02 Score=24.46 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.+.+|+.++|--|.+++......|..+++....... ......++..|.++..+..+
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLAD 64 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEec
Confidence 456788888999999999888889987665533211 22344566677776655433
No 334
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=38.60 E-value=60 Score=30.50 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=28.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~ 103 (323)
|-.-.+|..|+-+|.+|+++|++++++-|...
T Consensus 4 vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 4 VGILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred EEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 55678999999999999999999999998653
No 335
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=38.58 E-value=1.8e+02 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 78 GNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 78 GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
.|.+.+++..++++|+.++++-|..
T Consensus 164 ~~v~~Sl~~~~~~~g~~v~~~~P~~ 188 (338)
T PRK02255 164 TQVCVSLMFIATKMGMDFVHFGPKG 188 (338)
T ss_pred chHHHHHHHHHHhCCCEEEEECCCc
Confidence 4666666666666666666666664
No 336
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=38.55 E-value=2.8e+02 Score=24.59 Aligned_cols=52 Identities=29% Similarity=0.430 Sum_probs=31.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga 116 (323)
...+.++...+|...+|..|.+++..|+.+|.+.+++.+ +..+.+.++.+|+
T Consensus 137 ~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~ 188 (324)
T cd08244 137 LATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGA 188 (324)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCC
Confidence 344455556556556788888888888888877544322 2334444455555
No 337
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=38.38 E-value=2.1e+02 Score=25.75 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=34.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~-~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+...+.++...+|.. +|-.|.+++..|+. +|.+.+++.+ ++.+.+.++.+|++.+
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 211 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLT 211 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEE
Confidence 334455666655555 67788888888886 4877555432 3456666677777544
No 338
>PRK08264 short chain dehydrogenase; Validated
Probab=38.34 E-value=1.6e+02 Score=24.98 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGY-KLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi-~~~vv~p~ 101 (323)
+..+|+..+|.-|.++|......|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4568888999999999999999998 76666543
No 339
>PRK07904 short chain dehydrogenase; Provisional
Probab=38.23 E-value=2.7e+02 Score=24.18 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=33.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCC--HHHHHHHHHCCC-EEEEe
Q 020606 69 KTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYS--IERRIILRALGA-EVYLA 121 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~-Gi~~~vv~p~~~~--~~~~~~~~~~Ga-~v~~~ 121 (323)
+..+|+..+|--|.++|...... |.+++++.....+ ....+.++..|. ++..+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~ 65 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVI 65 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEE
Confidence 45678888888999999876666 5888777654332 122344555554 45444
No 340
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=38.16 E-value=1.5e+02 Score=28.90 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=38.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHCCCEEEE
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYL 120 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (323)
..|+.-.+|-.|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 3588899999999999999999999888743221 1 1245667888888764
No 341
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.10 E-value=3e+02 Score=24.98 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=33.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
+...+.++.+.+|. .+|..|.+++..|+.+|.+.++++.. +..+...++.+|++-
T Consensus 156 ~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 210 (343)
T cd05285 156 RRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATH 210 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcE
Confidence 45556666665664 45777888888888888873333322 244555556666643
No 342
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=37.92 E-value=2.6e+02 Score=24.00 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------------C-----HHHHHHHHH
Q 020606 54 SMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------------S-----IERRIILRA 113 (323)
Q Consensus 54 ~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~---------------~-----~~~~~~~~~ 113 (323)
..+..+.++++ ..|+...+.....+++-.+...|+|.+.+..... + ..-.+.+..
T Consensus 57 ~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (298)
T cd06268 57 AAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAE 131 (298)
T ss_pred HHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHH
Confidence 34455555553 4466555455556777788889998876542210 0 011233444
Q ss_pred CC--CEEEEeCCCCChh-HHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHHH
Q 020606 114 LG--AEVYLADPAVGFE-GFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG 190 (323)
Q Consensus 114 ~G--a~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aG 190 (323)
.| .+|..+..+..+. ...+...+..++. +...+.....+.... .+.....++.+ ..+|.|++. +.+....+
T Consensus 132 ~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~-~~~~~~~~l~~---~~~~~vi~~-~~~~~~~~ 205 (298)
T cd06268 132 KGKVKKVAIIYDDYAYGRGLAAAFREALKKL-GGEVVAEETYPPGAT-DFSPLIAKLKA---AGPDAVFLA-GYGGDAAL 205 (298)
T ss_pred hcCCCEEEEEEcCCchhHHHHHHHHHHHHHc-CCEEEEEeccCCCCc-cHHHHHHHHHh---cCCCEEEEc-cccchHHH
Confidence 44 5666664432222 2222333334443 322111110011111 12222223322 357877766 45567788
Q ss_pred HHHHHHhhCCCcEEEEEecCCC
Q 020606 191 AGRFLKEKNPNIKVYGIEPSES 212 (323)
Q Consensus 191 i~~~~~~~~~~~~vigv~~~~~ 212 (323)
+...+++.+.+.++++......
T Consensus 206 ~~~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 206 FLKQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred HHHHHHHcCCCCcEEecCccCC
Confidence 8999988877788888765544
No 343
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.90 E-value=2.5e+02 Score=23.82 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
++.+|+.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 466888999999999999888889997666544
No 344
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=37.89 E-value=2.6e+02 Score=23.98 Aligned_cols=55 Identities=25% Similarity=0.109 Sum_probs=35.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|.-|.++|......|.+++++-..... ......++..+.++..+..
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPF 65 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEec
Confidence 466888999999999999888889877665432111 1122344555666655443
No 345
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=37.86 E-value=2.3e+02 Score=24.15 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=36.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHH-HHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIER-RIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~-~~~~~~~Ga~v~~~~~~ 124 (323)
+.+|+..+|-.|.+++......|.+++++........+ ...++..+.++..+..+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 58 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVAD 58 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 45888889999999999888889987777554322212 22334456676655443
No 346
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=37.85 E-value=2.3e+02 Score=25.95 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCeEEEEe---CCCC-CHH----HHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCe-EeeCCCCCC
Q 020606 83 GLAFIAASRGYKLIIIM---PSTY-SIE----RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG-YILGQFENP 153 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~---p~~~-~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 153 (323)
+..|.++++|++..-++ |+.. ++. -++.++..+.++++++.. +. .+.++.++++.+.. ..++++...
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~--~~--~~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQ--FR--PAVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCC--CC--hHHHHHHHHhcCCeEEEecccccc
Confidence 88999999999987654 2222 222 355678899999999875 22 23455555554322 344566443
Q ss_pred Cchh-hhhhchHHHHHHhh
Q 020606 154 ANPE-IHYETTGPEIWNDS 171 (323)
Q Consensus 154 ~~~~-~g~~t~~~Ei~~q~ 171 (323)
.... ..|..+..+.++++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 3221 24555555555544
No 347
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=37.66 E-value=1.2e+02 Score=28.54 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 67 ~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
++.+ |+...+|.-|.+++..|+.+|.+.+++.+. +..+.+.++.+|++.+
T Consensus 178 ~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 178 SGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 4444 444445777877777888888764444322 2333555566777543
No 348
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=37.65 E-value=1.4e+02 Score=27.09 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=32.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 68 GKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 68 ~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+.+.+|...+|..|.+++..|+.+|++++++... .+.+.++.+|++
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~ 208 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGAD 208 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCc
Confidence 5565566667889999999999999986555432 355666777763
No 349
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=37.54 E-value=2.4e+02 Score=25.69 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 67 ~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
++.. |+...+|..|.+++..|+.+|.+.++++. .+..+...++.+|++
T Consensus 175 ~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 222 (350)
T cd08240 175 ADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGAD 222 (350)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCc
Confidence 3344 44445688888888888888885444442 235566666667764
No 350
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=37.27 E-value=2.5e+02 Score=23.61 Aligned_cols=56 Identities=29% Similarity=0.257 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~-~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|..++......|..++++........ ....++..|.++..+..+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFD 62 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEcc
Confidence 45688888999999999988888999666554332221 234455677777665433
No 351
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=37.26 E-value=68 Score=32.72 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=37.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---------C---------HHHHHHHHHCCCEEEE
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY---------S---------IERRIILRALGAEVYL 120 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~---------~---------~~~~~~~~~~Ga~v~~ 120 (323)
..|+.-.+|-.|.+.|++.++.|.+++||=.... + ...++.++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 3588899999999999999999999888843221 1 1135567778877654
No 352
>PRK10083 putative oxidoreductase; Provisional
Probab=37.24 E-value=3.1e+02 Score=24.69 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAAS-RGYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~-~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+...+.++.+.+|.. +|--|.+++..|+. +|.+.++.+.. ++.|.+.++.+|++-++
T Consensus 154 ~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 154 GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 344556666645544 78788887778885 59876665533 56778888888885443
No 353
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=37.22 E-value=1.6e+02 Score=25.95 Aligned_cols=48 Identities=33% Similarity=0.371 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 67 ~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
++...++...+|..|.+++..|+.+|.+.+...+ +..+...++.+|+.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 179 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAA 179 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 3556566667799999999999999987555432 35677777778875
No 354
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=37.16 E-value=2e+02 Score=24.59 Aligned_cols=55 Identities=27% Similarity=0.280 Sum_probs=36.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~~~ 124 (323)
..+|+..+|.-|.++|..-.+.|..+++....+.. ......++..+.++..+..+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGD 60 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 45788888999999999888889887665433211 12234456677777665443
No 355
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=37.16 E-value=2.7e+02 Score=24.01 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.++|......|.+++++...... +.....++..+.++..+..+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 69 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 466888888999999999888889987665432211 11223345567777665544
No 356
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=37.15 E-value=2.8e+02 Score=24.03 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=34.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-HCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILR-ALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~-~~Ga~v~~~~ 122 (323)
+..+|+..+|.-|.++|......|.+++++-.. ..+.+.+. .+|.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~ 57 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVE 57 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEE
Confidence 466888888999999999888999987765332 23333333 3455565544
No 357
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.11 E-value=3.5e+02 Score=25.18 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=75.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCC
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (323)
++++| .+++...-|--|.|++.-|+..|-.=+|=+ +..+.|.+.-+.+||+=.
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~GAsrIIgv--DiN~~Kf~~ak~fGaTe~------------------------ 241 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAAGASRIIGV--DINPDKFEKAKEFGATEF------------------------ 241 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhcCcccEEEE--ecCHHHHHHHHhcCccee------------------------
Confidence 34455 347778888888888888888886666654 335667777777766322
Q ss_pred eEeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCc
Q 020606 144 GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 213 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~ 213 (323)
++|-+ .. ..+-.-|.|..++.+|+-|=++|+=.++.-.....+..+-..-++||.+.+..
T Consensus 242 ---iNp~d----~~---~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~ 301 (375)
T KOG0022|consen 242 ---INPKD----LK---KPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQE 301 (375)
T ss_pred ---cChhh----cc---ccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcc
Confidence 22211 00 01111223334567999999999988888887777877788899999988874
No 358
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=37.07 E-value=2.9e+02 Score=24.81 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 68 GKTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 68 ~~~~vv~~S~GN~g~a~A~~a~~~-Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+...+|...+|..|.+++..|+.+ |++++++... ..+.+.++.+|++
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~ 196 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAH 196 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCC
Confidence 455555556688888888888877 8776555332 3455555667764
No 359
>PRK07814 short chain dehydrogenase; Provisional
Probab=36.86 E-value=2.7e+02 Score=24.19 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (323)
++.+|+.++|--|.++|......|.+++++...... ......++..|.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 466888899999999999888889987776543211 112233444465555443
No 360
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=36.77 E-value=3.5e+02 Score=25.09 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=31.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
|+..+++..+..++..+- +.-.-.|++|.-.-..-....+.+|++++.++-
T Consensus 94 vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 94 VLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred EEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 666677777776665442 232234555554433344557789999998764
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=36.71 E-value=1.5e+02 Score=28.70 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=38.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHCCCEEEE
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (323)
.|+.-.+|-.|.+.|..+++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 488888999999999999999999999864321 1 1245667888988764
No 362
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=36.71 E-value=3.1e+02 Score=24.48 Aligned_cols=32 Identities=25% Similarity=0.194 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHC
Q 020606 83 GLAFIAASRGYKLIIIMPSTYSIERRIILRAL 114 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~ 114 (323)
.+.-+|+..|++.+-+++.++++.+++.+...
T Consensus 131 ~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 131 ELREAAKKHGLDLIPLVAPTTPEERIKKIAKQ 162 (259)
T ss_dssp HHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh
Confidence 34444555555555555555555555554433
No 363
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=36.69 E-value=3e+02 Score=24.28 Aligned_cols=51 Identities=35% Similarity=0.492 Sum_probs=32.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHCCC
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALGA 116 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~-~~vv~p~~~~~~~~~~~~~~Ga 116 (323)
...+.++...+|. .+|-.|.+++..|+.+|.+ .+++ .. .+.+...++.+|+
T Consensus 124 ~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~ 175 (312)
T cd08269 124 RGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGA 175 (312)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCC
Confidence 4445555565555 4677888888888888888 4443 22 2455666677776
No 364
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=36.67 E-value=2.8e+02 Score=23.88 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=36.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|.-|.++|......|.+++++....... .-...++..|.++..+..
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 67 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRC 67 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 4668888889999999998888898877765432111 122334556766655443
No 365
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=36.66 E-value=2.4e+02 Score=23.23 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
.+..|+. ++...-|+-|+++|...+.+|..++|+ ...+.+..+..+.|=++.
T Consensus 19 ~~l~Gk~-vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~ 70 (162)
T PF00670_consen 19 LMLAGKR-VVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVM 70 (162)
T ss_dssp S--TTSE-EEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE
T ss_pred eeeCCCE-EEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEec
Confidence 3344444 788899999999999999999888776 345666666666777665
No 366
>PRK06138 short chain dehydrogenase; Provisional
Probab=36.65 E-value=2.7e+02 Score=23.73 Aligned_cols=55 Identities=9% Similarity=0.155 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|--|.++|..-...|.+++++...... ......++ .|.++..+..+
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D 61 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGD 61 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcC
Confidence 466888899999999999877889876666533211 11222233 46666655443
No 367
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=36.58 E-value=2.5e+02 Score=25.41 Aligned_cols=52 Identities=29% Similarity=0.281 Sum_probs=33.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+.+.++...++. .+|-.|.++...|+.+|...++.+ ..+..+.+.++.+|++
T Consensus 163 ~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 163 AGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGAT 214 (347)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCc
Confidence 445556665554 457788888888888897434444 3345666666777753
No 368
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=36.30 E-value=49 Score=31.71 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=24.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
||...+|-.|.+.|.+|++.|.++.++=+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 7778999999999999999999999997654
No 369
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=36.30 E-value=3.2e+02 Score=24.66 Aligned_cols=54 Identities=30% Similarity=0.504 Sum_probs=36.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+...+.++...+|. .+|-.|.+++..|+.+|.+.++... .++.+...++.+|++
T Consensus 155 ~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 208 (341)
T cd08262 155 RRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASD--FSPERRALALAMGAD 208 (341)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCc
Confidence 34445566565555 4588888888888889987655543 345677777778874
No 370
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=36.28 E-value=3.4e+02 Score=24.84 Aligned_cols=78 Identities=12% Similarity=-0.067 Sum_probs=42.9
Q ss_pred CCCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCe---EEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASRGYK---LIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~---~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
|.|.-..|.+...... ...|. ..++ ..|+..+++..+.-.+..+- .+-. -.|++|.-.-..-....+.+|+++
T Consensus 35 ~~G~~~lr~aia~~~~-~~~g~~~~~~-~~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~ 111 (350)
T TIGR03537 35 ALGTKALREAISGWFE-RRFGVKLDPD-AQVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGEP 111 (350)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCCC-CcEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCEE
Confidence 4577777755332221 22243 2221 13777777766655443322 2321 256666655555566678899999
Q ss_pred EEeCC
Q 020606 119 YLADP 123 (323)
Q Consensus 119 ~~~~~ 123 (323)
+.++-
T Consensus 112 ~~v~~ 116 (350)
T TIGR03537 112 TAVKL 116 (350)
T ss_pred EEccc
Confidence 98865
No 371
>PRK06500 short chain dehydrogenase; Provisional
Probab=36.26 E-value=2.7e+02 Score=23.65 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=34.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH-HHHHCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRI-ILRALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~-~~~~~Ga~v~~~~ 122 (323)
+..+|+..+|.-|.++|......|.+++++... ..+.. ..+.+|.++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIR 58 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEE
Confidence 466888899999999999888899887665332 22222 2344577765543
No 372
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.25 E-value=3e+02 Score=24.20 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=24.1
Q ss_pred CeEEEEeCCC--hHHHHHHHHHHHcCCeEEEEe
Q 020606 69 KTVLIELTSG--NTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 69 ~~~vv~~S~G--N~g~a~A~~a~~~Gi~~~vv~ 99 (323)
+..|||..++ .-|.++|......|.+++++-
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEec
Confidence 4567777665 688999998888998887764
No 373
>PRK09072 short chain dehydrogenase; Provisional
Probab=36.19 E-value=2.5e+02 Score=24.27 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=27.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
...+|+.++|-.|.++|......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 456888889999999999888889887776543
No 374
>PRK07775 short chain dehydrogenase; Provisional
Probab=36.15 E-value=3e+02 Score=24.12 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH-HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI-ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~-~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+|--|.+++......|.+++++....... .-...++..|.++..+..+
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLD 67 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3568888889999999998888899876665432111 1123355567777665443
No 375
>PRK08265 short chain dehydrogenase; Provisional
Probab=36.10 E-value=2.9e+02 Score=23.96 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=34.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|--|.++|......|.+++++-... ....+..+..+.++..+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~ 59 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIAT 59 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEe
Confidence 4668888889999999998888999776664322 1112223344666655543
No 376
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=35.96 E-value=2.5e+02 Score=25.37 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=31.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 65 ITPGKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 65 ~~~~~~~vv~~S~GN~g~a~A~~a~~~G-i~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+.++...+|.. +|..|.+++..|+.+| .+++++.. ++.+.+.++.+|++
T Consensus 165 ~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 165 LDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 44455555555 5568888888999988 66655432 34566666777763
No 377
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.87 E-value=2.9e+02 Score=23.87 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=25.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
+.....||-|.++|..-...|.+++|--...
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 5667889999999999999999988875443
No 378
>PRK09414 glutamate dehydrogenase; Provisional
Probab=35.87 E-value=1.5e+02 Score=28.84 Aligned_cols=52 Identities=13% Similarity=-0.065 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 49 DRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
-||..+.+..+.+.........+|+.-..||-|..+|.....+|.+++.+..
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4677777777655433333345688888899999999999888888877754
No 379
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=35.66 E-value=1.8e+02 Score=26.63 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=17.7
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 020606 76 TSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (323)
Q Consensus 76 S~GN~g~a~A~~a~~~Gi~~~vv~p~~~ 103 (323)
-.+|.+.|++..++++|+.++++-|...
T Consensus 161 d~~rv~~Sl~~~~~~~G~~v~~~~P~~~ 188 (311)
T PRK14804 161 VHNNVVNSLIGITAALGIHLTLVTPIAA 188 (311)
T ss_pred CCCcHHHHHHHHHHHcCCEEEEECCCCc
Confidence 3356666666666666666666666653
No 380
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=35.62 E-value=4.4e+02 Score=25.90 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHcCCeEEE-----------EeCCCCCHHHHHHHHHCCCEEEEe----CCCCChhHHHHHHHHHHHhCCCeEeeC
Q 020606 84 LAFIAASRGYKLII-----------IMPSTYSIERRIILRALGAEVYLA----DPAVGFEGFVKKGEEILNRTPNGYILG 148 (323)
Q Consensus 84 ~A~~a~~~Gi~~~v-----------v~p~~~~~~~~~~~~~~Ga~v~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (323)
+...|+..|.++.+ -.|..+.-..+...-..|++-+.. ....+.-++.+...+.+++-...++..
T Consensus 264 ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (480)
T cd00288 264 LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHR 343 (480)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchh
Q ss_pred CCCCCC---------chhhhhhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecC
Q 020606 149 QFENPA---------NPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPS 210 (323)
Q Consensus 149 ~~~~~~---------~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~ 210 (323)
.+.+.. +.+ .....+.++.+++ +.++||+++-+|.+ +..+....|.++|+++.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~-aia~sAv~~A~~l--~akaIVv~T~SG~T----A~~lS~~RP~~pIiavT~~ 407 (480)
T cd00288 344 VLFNEMRRLTPRPTSTTE-AVAMSAVRAAFEL--GAKAIVVLTTSGRT----ARLVSKYRPNAPIIAVTRN 407 (480)
T ss_pred hhhhhhhcccccCCChHH-HHHHHHHHHHHhc--CCCEEEEECCCcHH----HHHHHhhCCCCCEEEEcCC
No 381
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=35.46 E-value=1.7e+02 Score=26.61 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=33.2
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 65 ~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+.++.+.+|. ..|..|.+++..|+.+|++.+++.+. ..+...++.+|++-+
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~v 217 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEF 217 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEE
Confidence 4455565554 46888888888999999865554332 345556667776543
No 382
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=35.43 E-value=2.7e+02 Score=26.02 Aligned_cols=82 Identities=20% Similarity=0.066 Sum_probs=41.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHH-HhCCCeEeeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEIL-NRTPNGYILGQF 150 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 150 (323)
|+..+++..+..++..+- ..-.-.|++|.-.-..-....+.+|++++.++.+.++.-..+...+.. .......++.
T Consensus 106 I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~-- 182 (380)
T PLN03026 106 ILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLT-- 182 (380)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEe--
Confidence 666666777776655332 121124555543333334456779999998865422322222222222 2233566664
Q ss_pred CCCCchh
Q 020606 151 ENPANPE 157 (323)
Q Consensus 151 ~~~~~~~ 157 (323)
||.|+.
T Consensus 183 -~P~NPT 188 (380)
T PLN03026 183 -SPNNPD 188 (380)
T ss_pred -CCCCCC
Confidence 445553
No 383
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=35.42 E-value=3.3e+02 Score=24.36 Aligned_cols=52 Identities=31% Similarity=0.426 Sum_probs=34.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+.+.++...+|...+|-.|.+++..|+.+|.+.+++.. +..+...++.+|++
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCD 186 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCc
Confidence 44556666666667788888888888888887555432 23455555667763
No 384
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=35.31 E-value=2.7e+02 Score=26.31 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=32.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
.|+..+++..+..++..+- .+-.-.|++|.-+-..-....+.+|++++.++-
T Consensus 106 ~i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred hEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 3676777777777666543 222234555544334445667889999988864
No 385
>PRK06483 dihydromonapterin reductase; Provisional
Probab=35.18 E-value=2.8e+02 Score=23.48 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|--|.++|......|.+++++-... ....+.++..|++.+.++-
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~ 55 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADF 55 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCC
Confidence 3568888999999999998888899887765432 2234555667877766654
No 386
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=35.16 E-value=3.4e+02 Score=26.11 Aligned_cols=54 Identities=19% Similarity=0.054 Sum_probs=37.4
Q ss_pred EEEEeCCChHHHHHHHHHHH------cCC--eEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAAS------RGY--KLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~------~Gi--~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.++..++|..+..+|..+.. .++ .-.|++|..+-......+...|++++.++-+
T Consensus 80 ~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 80 YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 36667778888777775431 132 3467778777677777888899999988653
No 387
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=35.16 E-value=2.6e+02 Score=26.92 Aligned_cols=48 Identities=23% Similarity=0.217 Sum_probs=32.7
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 67 ~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
.|+ +++....|+-|+++|..++.+|.+++++=. ++.+.......|.++
T Consensus 211 ~Gk-~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~---dp~ra~~A~~~G~~v 258 (425)
T PRK05476 211 AGK-VVVVAGYGDVGKGCAQRLRGLGARVIVTEV---DPICALQAAMDGFRV 258 (425)
T ss_pred CCC-EEEEECCCHHHHHHHHHHHhCCCEEEEEcC---CchhhHHHHhcCCEe
Confidence 444 477788899999999999999997555422 233444444557664
No 388
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=35.14 E-value=52 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=22.0
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 75 LTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 75 ~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
....+.+..++..++..|||+.++.-
T Consensus 7 G~C~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 7 GTCGEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eeeHHHHHHHHHHHHHCCCCeEEEee
Confidence 45567888999999999999999863
No 389
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=34.99 E-value=1.6e+02 Score=26.54 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=37.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH----HHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~----~~~~~~~~~Ga~v~~~~~~ 124 (323)
++|.|.+.+.+..++-..|...|.+..|++.++.|. .-...+...|-.+.++...
T Consensus 111 ~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Ds 169 (275)
T PRK08335 111 DVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITDA 169 (275)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEecc
Confidence 357777655555565567778888888888776542 2245567789888887643
No 390
>PRK06841 short chain dehydrogenase; Provisional
Probab=34.95 E-value=2.9e+02 Score=23.63 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
+..+|+..+|--|.++|......|.+++++-..
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888888999999999888899987665543
No 391
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=34.94 E-value=3.2e+02 Score=24.05 Aligned_cols=54 Identities=28% Similarity=0.336 Sum_probs=34.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
+.+.+.++...+|...+|..|.+++..++..|.+.+++... +.+.+.++.+|++
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 186 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGAD 186 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCc
Confidence 34455666666666667888888888888888876554332 3344444556653
No 392
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=34.92 E-value=2.5e+02 Score=25.57 Aligned_cols=48 Identities=33% Similarity=0.381 Sum_probs=34.0
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 66 ~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
.++.+.+|...+|..|.+++..|+.+|.+.+... . ..+.+.++.+|++
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~ 200 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGAD 200 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCC
Confidence 4555655656678899999999999999766543 2 2566666778874
No 393
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=34.68 E-value=1.1e+02 Score=28.65 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=35.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++..++|..|..+|..+-.++-.-.|++|..+-......++..|++++.++-+
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~ 103 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVD 103 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecC
Confidence 55567777776666644322333467777766666667778899999998753
No 394
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=34.63 E-value=88 Score=24.66 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=20.8
Q ss_pred CCCeEEEEeCCChHH--HHHHHHHHHcCCeEEEEe
Q 020606 67 PGKTVLIELTSGNTG--IGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 67 ~~~~~vv~~S~GN~g--~a~A~~a~~~Gi~~~vv~ 99 (323)
++.--|+.++|||.. +..+..|+..|++++.+.
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 444434556778877 455668999999998874
No 395
>PRK05717 oxidoreductase; Validated
Probab=34.62 E-value=3e+02 Score=23.67 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=35.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|.++|......|.+++++-... .......+..+.+++.+..+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~D 64 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMD 64 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEcc
Confidence 5668888999999999998888898877653221 11222334456555554433
No 396
>PRK08363 alanine aminotransferase; Validated
Probab=34.54 E-value=2.7e+02 Score=26.02 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=30.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 121 (323)
|+..+++.+|..++..+- .+-.-.|+++...-..-...++.+|++++.+
T Consensus 96 i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~ 144 (398)
T PRK08363 96 VRVTAAVTEALQLIFGAL-LDPGDEILIPGPSYPPYTGLVKFYGGVPVEY 144 (398)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHHcCCEEEEe
Confidence 666677777777666443 3333345565544444455677899998877
No 397
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=34.53 E-value=2e+02 Score=27.33 Aligned_cols=56 Identities=29% Similarity=0.366 Sum_probs=39.2
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHHcC--CeEEEEeCC
Q 020606 44 CSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL--TSGNTGIGLAFIAASRG--YKLIIIMPS 101 (323)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~--S~GN~g~a~A~~a~~~G--i~~~vv~p~ 101 (323)
-|-.|.|.|..++.++..+|++.. ...+++. ++|-++.|+|. |+.+| +|++.+.-.
T Consensus 27 VGQ~~AReAagiiv~mIk~~K~aG-r~iLiaGppGtGKTAlA~~i-a~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 27 VGQEKAREAAGIIVDMIKEGKIAG-RAILIAGPPGTGKTALAMAI-AKELGEDVPFVSISGS 86 (398)
T ss_dssp ES-HHHHHHHHHHHHHHHTT--TT--EEEEEE-TTSSHHHHHHHH-HHHCTTTS-EEEEEGG
T ss_pred cChHHHHHHHHHHHHHHhcccccC-cEEEEeCCCCCCchHHHHHH-HHHhCCCCCeeEcccc
Confidence 377899999999999999987653 3334443 67899888877 67777 888877654
No 398
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=34.33 E-value=97 Score=22.51 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCCcc
Q 020606 166 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV 214 (323)
Q Consensus 166 Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~~~ 214 (323)
+.+++.-...|.+|+-+..|..+--++-.++....++-|+.|+..++-.
T Consensus 3 ~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~v 51 (84)
T PF11760_consen 3 DLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFV 51 (84)
T ss_dssp --HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EE
T ss_pred hHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEE
Confidence 3445544568888888888998888888888888889999999988753
No 399
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=34.29 E-value=2.3e+02 Score=26.27 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 78 GNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 78 GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
.|.++|++.+++++|+.++++.|+.
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~ 190 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKE 190 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCcc
Confidence 3667777777777777777777765
No 400
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=34.23 E-value=64 Score=29.14 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=25.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
.|+...+|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 3788899999999999999999999998643
No 401
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=34.19 E-value=1.6e+02 Score=26.72 Aligned_cols=57 Identities=26% Similarity=0.284 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHCCCEEEE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYL 120 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~-~~~~~~~~~~~Ga~v~~ 120 (323)
.+.++...+|...+|..|.+++..|+.+|.++++...... -..+...++.+|++-++
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 3445555444445688888888899999988766654321 11445555667775443
No 402
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=34.03 E-value=2.3e+02 Score=27.79 Aligned_cols=86 Identities=9% Similarity=0.138 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCeEEEEe---CCCC-CHH----HHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCC
Q 020606 83 GLAFIAASRGYKLIIIM---PSTY-SIE----RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPA 154 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~---p~~~-~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (323)
++.|.++++|++..-++ |+.. ++. -++.++..+..+++++.. +....+.++.++++. +...+.-+.++.
T Consensus 380 af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Epq--~~~~~~~l~~IA~e~-Gv~V~~l~~d~l 456 (479)
T TIGR03772 380 AYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENLKVPAVFLEPN--LAARSTTLNEIADEL-GVRVCAIYGDTF 456 (479)
T ss_pred cHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--CCCchHHHHHHHHHc-CCcEEeeecCCC
Confidence 88999999999988765 2322 222 355678899999999876 333334456666665 332111111222
Q ss_pred chh-hhhhchHHHHHHhh
Q 020606 155 NPE-IHYETTGPEIWNDS 171 (323)
Q Consensus 155 ~~~-~g~~t~~~Ei~~q~ 171 (323)
... ..|..+..+.++++
T Consensus 457 ~~~~~tY~~~M~~N~~~L 474 (479)
T TIGR03772 457 DDDVTNYVDLMRFNADSL 474 (479)
T ss_pred CCccccHHHHHHHHHHHH
Confidence 111 14666666666654
No 403
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=34.01 E-value=2.1e+02 Score=21.77 Aligned_cols=88 Identities=9% Similarity=-0.103 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHCCCEEEEeCCCCC---hhHHHHHHHHHHHhCCCeEeeC-CCCCCCchhhhhhchHHHHHHhhCCCc
Q 020606 100 PSTYSIERRIILRALGAEVYLADPAVG---FEGFVKKGEEILNRTPNGYILG-QFENPANPEIHYETTGPEIWNDSGGKV 175 (323)
Q Consensus 100 p~~~~~~~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~g~~t~~~Ei~~q~~~~~ 175 (323)
....++..+..+...|-+.+..-...+ -+.....-++.+++. |.-|++ |... ..+..-...-..++++++ ++|
T Consensus 12 s~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~-Gl~y~~iPv~~-~~~~~~~v~~f~~~l~~~-~~P 88 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEAL-GLQYVHIPVDG-GAITEEDVEAFADALESL-PKP 88 (110)
T ss_dssp ECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHC-T-EEEE----T-TT--HHHHHHHHHHHHTT-TTS
T ss_pred CCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeecCC-CCCCHHHHHHHHHHHHhC-CCC
Confidence 334566778888888888887743211 111222233445555 554433 2211 111112223334666666 456
Q ss_pred cEEEEecCCchhHHHHH
Q 020606 176 DAFIAGIGTGGTVTGAG 192 (323)
Q Consensus 176 d~vvvp~G~Gg~~aGi~ 192 (323)
=.+.| .+|.-.+.++
T Consensus 89 vl~hC--~sG~Ra~~l~ 103 (110)
T PF04273_consen 89 VLAHC--RSGTRASALW 103 (110)
T ss_dssp EEEE---SCSHHHHHHH
T ss_pred EEEEC--CCChhHHHHH
Confidence 44444 4554444443
No 404
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.96 E-value=2.6e+02 Score=24.15 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=35.9
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCC----CC----CH----HHHHHHHHCCCEEEEeCCC
Q 020606 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMPS----TY----SI----ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~--GN~g~a~A~~a~~~Gi~~~vv~p~----~~----~~----~~~~~~~~~Ga~v~~~~~~ 124 (323)
+..+|+..+ +.-|.++|......|.++++.-.. .. .. ...+.++..|.++..+..+
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D 76 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELD 76 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 455777665 489999999888899987775211 10 11 1234466778888766544
No 405
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=33.84 E-value=1.2e+02 Score=26.01 Aligned_cols=46 Identities=28% Similarity=0.297 Sum_probs=25.8
Q ss_pred hHHHHHHhhCCCccEEE-EecCCchhHHHHHHHHHhhCCCcEEEEEecC
Q 020606 163 TGPEIWNDSGGKVDAFI-AGIGTGGTVTGAGRFLKEKNPNIKVYGIEPS 210 (323)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv-vp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~ 210 (323)
...|++-++ +||.|+ +.+-.||.+.=.+.-++..+++.+|+||+-.
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 456888887 678776 3344666554444445566688999999974
No 406
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=33.80 E-value=2.9e+02 Score=25.51 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=36.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
...+.++...+|. .+|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 178 ~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 178 TAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 3445566665555 67899999999999999875554432 45677777778874
No 407
>PRK06953 short chain dehydrogenase; Provisional
Probab=33.79 E-value=2e+02 Score=24.16 Aligned_cols=51 Identities=29% Similarity=0.290 Sum_probs=35.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
..+|+..+|.-|.++|..-...|.+++++... ..+.+.++..+.+.+.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecC
Confidence 45788888999999999777889887776543 3344555556766655554
No 408
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=33.78 E-value=2.3e+02 Score=26.28 Aligned_cols=52 Identities=29% Similarity=0.340 Sum_probs=29.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 65 ~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+.++.+ |+...+|.-|.+++..|+.+|.+.+++... +..+....+.+|++-+
T Consensus 181 ~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~v 232 (360)
T PLN02586 181 TEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSF 232 (360)
T ss_pred cCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEE
Confidence 344545 444556788888888888888765443322 2223344456777433
No 409
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=33.71 E-value=2.3e+02 Score=24.20 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=47.9
Q ss_pred CCCCchhhhhhchHHHH----HHhhC------CCccEEEEecC-CchhHHHHH----HHHHhhCCCcEEEEEecCCCccc
Q 020606 151 ENPANPEIHYETTGPEI----WNDSG------GKVDAFIAGIG-TGGTVTGAG----RFLKEKNPNIKVYGIEPSESAVL 215 (323)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei----~~q~~------~~~d~vvvp~G-~Gg~~aGi~----~~~~~~~~~~~vigv~~~~~~~~ 215 (323)
....++..||.+.+.++ .+++. ..+|.+++..| +|||=+|++ ..+++.+|+..++.+.......
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~- 168 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSS- 168 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGG-
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccccc-
Confidence 34445666877654433 33321 35676666554 444445544 3446667777766664332211
Q ss_pred cCCCCccccccccCCCCCCccccccCcCeEEEeCHHHHHHHHH
Q 020606 216 NGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 258 (323)
Q Consensus 216 ~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~ 258 (323)
.+...+. .. ........+..|..+.++.+...+.+.
T Consensus 169 -e~~~~~~-Na-----~~~l~~l~~~~d~~i~~dN~~l~~~~~ 204 (216)
T PF00091_consen 169 -EGVVEPY-NA-----LLSLSELQEYADSVILFDNDALYKICK 204 (216)
T ss_dssp -GSHHHHH-HH-----HHHHHHHHHTSSEEEEEEHHHHHHHHH
T ss_pred -ccccccc-ee-----hhHHHHHHHhCCEEEEEcHHHHHHHHh
Confidence 0000000 00 000111235678888888777666543
No 410
>PRK06198 short chain dehydrogenase; Provisional
Probab=33.61 E-value=3.1e+02 Score=23.54 Aligned_cols=55 Identities=24% Similarity=0.249 Sum_probs=36.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH--HHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI--ERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~--~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|.-|..+|......|.+.++++...... .....++..|.++..+..
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 63 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQA 63 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4568888889999999998888898844444333211 123345667888765543
No 411
>PRK08251 short chain dehydrogenase; Provisional
Probab=33.56 E-value=3e+02 Score=23.40 Aligned_cols=56 Identities=29% Similarity=0.308 Sum_probs=34.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHH-HHHHHHC--CCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIER-RIILRAL--GAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~-~~~~~~~--Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|..-...|.++++.......... ...++.. |.++..+..+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcC
Confidence 356888899999999999888889876665443211111 1222222 6677666544
No 412
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=33.56 E-value=1.1e+02 Score=26.42 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=23.1
Q ss_pred eEEEEeC--CChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 70 TVLIELT--SGNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 70 ~~vv~~S--~GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
+++.-.| +|-+-..||.+|++.|+++.|++...
T Consensus 43 TTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 43 TTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred ceecccCCCCCcChHHHHHHHHHcCCceEEEECCC
Confidence 4455444 35555667777888899999999764
No 413
>PRK12414 putative aminotransferase; Provisional
Probab=33.49 E-value=4e+02 Score=24.81 Aligned_cols=52 Identities=17% Similarity=0.003 Sum_probs=29.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++..++|..+..++..+- +.-.-.|+++.-.-..-...++..|++++.++-+
T Consensus 93 i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 144 (384)
T PRK12414 93 VTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLS 144 (384)
T ss_pred EEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccchHHHHHHcCCEEEEEecC
Confidence 666677777776665432 2222234444433233444566789999988643
No 414
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=33.43 E-value=1.6e+02 Score=26.95 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=39.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH----HHHHHHHHCCCEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADP 123 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~----~~~~~~~~~Ga~v~~~~~ 123 (323)
++|.|.+.+.+..++-..|...|.+..|++.++.|. .-...+...|-.+.++..
T Consensus 117 ~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~D 174 (301)
T TIGR00511 117 DVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVD 174 (301)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEeh
Confidence 458888766666666667777888999999877552 235567788999988854
No 415
>PRK12747 short chain dehydrogenase; Provisional
Probab=33.41 E-value=2.6e+02 Score=23.96 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHHHHHHCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS--IERRIILRALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~~~~~~Ga~v~~~~ 122 (323)
+..+|+..+|--|.++|..-...|.++++....... ......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 466888889999999999888999887765322211 122334455566655443
No 416
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=33.41 E-value=74 Score=21.70 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 76 TSGNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 76 S~GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
.+|=.|.+.|+..++.|.+++|+=..+
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 468889999999999999998886544
No 417
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=33.32 E-value=1.9e+02 Score=24.39 Aligned_cols=79 Identities=20% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCCHH----HHHHHHHCC
Q 020606 42 QPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSG--NTGIGLAFIAASRGYKLIIIMPSTYSIE----RRIILRALG 115 (323)
Q Consensus 42 ~ptGS~K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~G--N~g~a~A~~a~~~Gi~~~vv~p~~~~~~----~~~~~~~~G 115 (323)
.|||+=|--.+.-+..+...+|. .-.++++-+- -.--.+..+|+.+|+++...-....+.. -++.++.-+
T Consensus 8 GptGvGKTTt~aKLAa~~~~~~~----~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (196)
T PF00448_consen 8 GPTGVGKTTTIAKLAARLKLKGK----KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKG 83 (196)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTT------EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCchHhHHHHHHHHHhhccc----cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcC
Confidence 47888888877666666555553 3445655332 2335677789999988877443332222 133344556
Q ss_pred CEEEEeCCC
Q 020606 116 AEVYLADPA 124 (323)
Q Consensus 116 a~v~~~~~~ 124 (323)
.+++++|..
T Consensus 84 ~D~vlIDT~ 92 (196)
T PF00448_consen 84 YDLVLIDTA 92 (196)
T ss_dssp SSEEEEEE-
T ss_pred CCEEEEecC
Confidence 778887643
No 418
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=33.20 E-value=4.1e+02 Score=24.85 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=31.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
.|+..+++..+..++..+-. .-.-.|++|.-+-..-...++.+|++++.++-
T Consensus 97 ~i~~t~G~~~al~~~~~~l~-~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALA-NAGQNILVPRPGFPLYETLAESMGIEVKLYNL 148 (401)
T ss_pred HEEECcChHHHHHHHHHHhC-CCCCEEEEeCCCChhHHHHHHHcCCEEEEeec
Confidence 36767777777766654332 21224555544434445667889999988753
No 419
>PRK07985 oxidoreductase; Provisional
Probab=33.16 E-value=3.5e+02 Score=24.08 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-C-H-HHHHHHHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY-S-I-ERRIILRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~-~-~-~~~~~~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|.-|.++|......|.++++.-.... . . .....++..|.+++.+..
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPG 107 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEc
Confidence 46688899999999999988889998776543221 1 1 122234556777665543
No 420
>PRK13984 putative oxidoreductase; Provisional
Probab=33.10 E-value=1.8e+02 Score=29.33 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=37.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------C----HHHHHHHHHCCCEEEE
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------S----IERRIILRALGAEVYL 120 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~--------------~----~~~~~~~~~~Ga~v~~ 120 (323)
.|+...+|-.|.+.|...++.|++++|+=.... + ...++.++.+|.+++.
T Consensus 285 ~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 366667999999999999999999998843221 1 2245677888988764
No 421
>PRK13243 glyoxylate reductase; Reviewed
Probab=33.10 E-value=4e+02 Score=24.63 Aligned_cols=103 Identities=23% Similarity=0.246 Sum_probs=61.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ 149 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (323)
.+|..-.-|+-|.++|..++.+|++++++=|... .. ....+|++. . + ++ ++.++. +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~-~~---~~~~~~~~~--~--~--l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRK-PE---AEKELGAEY--R--P--LE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCC-hh---hHHHcCCEe--c--C--HH-------HHHhhC-CEEEEeC
Confidence 3466678899999999999999999877655322 11 123345421 1 1 22 223333 3333321
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHH--HHHHHHH
Q 020606 150 FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLK 196 (323)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~a--Gi~~~~~ 196 (323)
|...+ -...+..|.++++ +++.+++=++.|+.+- .+..+++
T Consensus 213 ---P~t~~-T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 213 ---PLTKE-TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred ---CCChH-HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHH
Confidence 23332 3344556788887 5789999999999875 4444443
No 422
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=33.07 E-value=1.8e+02 Score=23.99 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC--CCHHH--HHHHHHCC---CEEEEeCC
Q 020606 51 IAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPST--YSIER--RIILRALG---AEVYLADP 123 (323)
Q Consensus 51 ~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~--~~~~~--~~~~~~~G---a~v~~~~~ 123 (323)
++...+....+.|. + ++..| |++-......++.+|+.-.++.... .|..| .+.++.++ .+|..++.
T Consensus 131 ~~~~~l~~L~~~Gi-----~-~~i~T-GD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI-----K-VAILT-GDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE-----E-EEEEE-SSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc-----c-eeeee-ccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 45666777777773 2 45555 4444455667889999665555555 78888 78887776 36777765
Q ss_pred C
Q 020606 124 A 124 (323)
Q Consensus 124 ~ 124 (323)
.
T Consensus 204 g 204 (215)
T PF00702_consen 204 G 204 (215)
T ss_dssp S
T ss_pred C
Confidence 5
No 423
>PRK07060 short chain dehydrogenase; Provisional
Probab=33.00 E-value=2.4e+02 Score=23.96 Aligned_cols=53 Identities=25% Similarity=0.223 Sum_probs=36.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHCCCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-RALGAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~-~~~Ga~v~~~~~~ 124 (323)
++.+|+..+|.-|..++......|.+++++... ..+.+.+ ...+.+++.++-.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~~ 63 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDVG 63 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecCC
Confidence 466888888999999999999999986665443 2333332 3456777666543
No 424
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=32.88 E-value=2.8e+02 Score=25.54 Aligned_cols=51 Identities=18% Similarity=-0.003 Sum_probs=29.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
|+..+++..+..+...+- .+-.-.|+++...-..-....+..|++++.++.
T Consensus 87 i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 137 (367)
T PRK02731 87 IILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA 137 (367)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc
Confidence 666666666655443322 222245556554434444456789999998865
No 425
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.81 E-value=3.3e+02 Score=23.64 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.3
Q ss_pred CeEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC
Q 020606 69 KTVLIELTS--GNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 69 ~~~vv~~S~--GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
+..+|+.++ +.-|.++|..-.+.|.++++.-.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence 455777754 78999999988889998776543
No 426
>PRK06202 hypothetical protein; Provisional
Probab=32.78 E-value=58 Score=28.10 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=28.8
Q ss_pred ccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020606 175 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (323)
Q Consensus 175 ~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~ 212 (323)
...+=+.+|+|....-++..++..++..+++|+++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 34667788888877766666666677889999998765
No 427
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=32.76 E-value=3.9e+02 Score=24.51 Aligned_cols=85 Identities=13% Similarity=0.038 Sum_probs=44.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 150 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~-~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (323)
|+...+++.+..++..+- .+-. -.|+++.-+-..-....+.+|++++.++-+.++.-..+...+... .....|+.
T Consensus 77 I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-~~~lv~l~-- 152 (351)
T PRK01688 77 VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-GVKVVYVC-- 152 (351)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-CCcEEEEe--
Confidence 777777788777666442 2221 344455433334455678899999988654223211222222222 22455553
Q ss_pred CCCCchhhhhhc
Q 020606 151 ENPANPEIHYET 162 (323)
Q Consensus 151 ~~~~~~~~g~~t 162 (323)
||.|+. |...
T Consensus 153 -nPnNPT-G~~~ 162 (351)
T PRK01688 153 -SPNNPT-GNLI 162 (351)
T ss_pred -CCCCCC-CCCC
Confidence 555664 5443
No 428
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=32.65 E-value=2.4e+02 Score=26.20 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCCC--CHHHHHH----HHHCCCEEEEeC
Q 020606 79 NTGIGLAFIAASRGYKLIIIMPSTY--SIERRII----LRALGAEVYLAD 122 (323)
Q Consensus 79 N~g~a~A~~a~~~Gi~~~vv~p~~~--~~~~~~~----~~~~Ga~v~~~~ 122 (323)
|.+++++..++++|++++++.|+.. ++..++. .+..|.++..++
T Consensus 167 ~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 167 NMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred cHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 7788888888888888888888763 2222222 234677766554
No 429
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.60 E-value=1.6e+02 Score=27.06 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=39.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCH----HHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSI----ERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~----~~~~~~~~~Ga~v~~~~~~ 124 (323)
++|.|.+.+.+...+-..|...|.+..|++.++.|. .-...+...|-++..+...
T Consensus 122 ~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Ds 180 (310)
T PRK08535 122 DVIMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDS 180 (310)
T ss_pred CEEEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehh
Confidence 458887766666666667777888999999887653 2345677889999888643
No 430
>PLN02583 cinnamoyl-CoA reductase
Probab=32.53 E-value=2.3e+02 Score=25.30 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=28.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
+..+|+..+|--|.+++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 466888899999999999999999999888764
No 431
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=32.50 E-value=1.9e+02 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 020606 48 KDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAF 86 (323)
Q Consensus 48 K~R~a~~~l~~a~~~g~~~~~~~~vv~~S~GN~g~a~A~ 86 (323)
+.+.+...|.++.++| ...+++.|.|+.-..++.
T Consensus 27 ~i~~~a~~ia~l~~~g-----~~vviv~gngpqvG~~~l 60 (310)
T TIGR00746 27 NVRQTAPQIAKLIKRG-----YELVITHGNGPQVGNLLL 60 (310)
T ss_pred HHHHHHHHHHHHHHCC-----CEEEEEECChHHHHHHHh
Confidence 5666677777888777 466788888887665554
No 432
>PRK06290 aspartate aminotransferase; Provisional
Probab=32.21 E-value=4.4e+02 Score=24.94 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=33.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.|+..+++..+..++..+- ++-.-.|++|.-.-..-...++.+|++++.++-+
T Consensus 108 ~I~it~Gs~~al~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~ 160 (410)
T PRK06290 108 EVIHSIGSKPALAMLPSCF-INPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLL 160 (410)
T ss_pred eEEEccCHHHHHHHHHHHh-CCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecC
Confidence 3777777888877665433 2222345555544444566778899999988653
No 433
>PRK09291 short chain dehydrogenase; Provisional
Probab=31.97 E-value=1.9e+02 Score=24.75 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=27.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
++.+|+..+|.-|.+++......|.++++....
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 356889999999999999999999988887654
No 434
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=31.94 E-value=3.6e+02 Score=23.75 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=35.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 61 ~~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
+.+.+.++...+|...+|..|.+++..++.+|.++++..+ + .+.+.++.+|++-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~ 191 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADP 191 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCE
Confidence 3455556666555555788899988999999988665543 2 4455556677643
No 435
>PLN02494 adenosylhomocysteinase
Probab=31.88 E-value=2e+02 Score=28.18 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=54.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ 149 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (323)
++++....|+-|+++|..++.+|.+++++=. ++.+.......|.++. + .++ ..+.. +.++...
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~---dp~r~~eA~~~G~~vv----~--leE-------al~~A-DVVI~tT 317 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEI---DPICALQALMEGYQVL----T--LED-------VVSEA-DIFVTTT 317 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CchhhHHHHhcCCeec----c--HHH-------HHhhC-CEEEECC
Confidence 3488899999999999999999997555322 3334344556777643 1 222 12222 3333211
Q ss_pred CCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCch
Q 020606 150 FENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186 (323)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg 186 (323)
. ....+..+.++++ ++..+++-+|..+
T Consensus 318 -G-------t~~vI~~e~L~~M--K~GAiLiNvGr~~ 344 (477)
T PLN02494 318 -G-------NKDIIMVDHMRKM--KNNAIVCNIGHFD 344 (477)
T ss_pred -C-------CccchHHHHHhcC--CCCCEEEEcCCCC
Confidence 0 1123345667776 5677888888754
No 436
>PRK06847 hypothetical protein; Provisional
Probab=31.81 E-value=69 Score=29.67 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
.|+...+|-.|.++|...++.|++++|+=.
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 388889999999999999999999988853
No 437
>PRK06354 pyruvate kinase; Provisional
Probab=31.60 E-value=5.6e+02 Score=25.93 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCeEEEEe-----------CCCCCHHHHHHHHHCCCEEEEeCCCC----ChhHHHHHHHHHHHhCCCeE-
Q 020606 82 IGLAFIAASRGYKLIIIM-----------PSTYSIERRIILRALGAEVYLADPAV----GFEGFVKKGEEILNRTPNGY- 145 (323)
Q Consensus 82 ~a~A~~a~~~Gi~~~vv~-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~~- 145 (323)
.-+...|+..|.|+++-. |..+.-..+...-..|++-+...++. +.-++.+...+.+++....+
T Consensus 267 k~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~ 346 (590)
T PRK06354 267 KRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLP 346 (590)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccc
Confidence 446678899999998853 33344445666667899998876542 22345555444433221111
Q ss_pred ee---CCC-CCCCchhhhhhchHHHHHHhhCCCccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecCCC
Q 020606 146 IL---GQF-ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 212 (323)
Q Consensus 146 ~~---~~~-~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~~~ 212 (323)
|. ... .+...........+.++.+++ +.+.|++.+-+|.++--+ ....|.+.|+++.+...
T Consensus 347 ~~~~~~~~~~~~~~~~~~ia~aa~~~a~~~--~a~~Iv~~T~sG~ta~~v----sk~Rp~~pI~a~t~~~~ 411 (590)
T PRK06354 347 YRDILSKRPEFTTTITNAISQAVSHIALQL--DAAAIVTLTKSGATARNV----SKYRPKTPILAVTPNES 411 (590)
T ss_pred hhhhhhhccccCCCHHHHHHHHHHHHHhhc--CCCEEEEECCChHHHHHH----HhhCCCCCEEEECCCHH
Confidence 10 000 000011112334445666665 467899999999986544 44568888998876654
No 438
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=31.58 E-value=3.7e+02 Score=24.70 Aligned_cols=50 Identities=16% Similarity=0.016 Sum_probs=33.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~ 123 (323)
.|+..+++.++..++..+ +. +-.|+++.-.-..-...++..|++++.++-
T Consensus 73 ~i~it~Ga~~~l~~~~~~--~~-~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~ 122 (354)
T PRK06358 73 NVILGNGATELIFNIVKV--TK-PKKVLILAPTFAEYERALKAFDAEIEYAEL 122 (354)
T ss_pred hEEECCCHHHHHHHHHHH--hC-CCcEEEecCChHHHHHHHHHcCCeeEEEeC
Confidence 377777788887766654 32 235666665555556667889999998864
No 439
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=31.48 E-value=2e+02 Score=27.75 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=38.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCC-----CCHHHHHHHHHCCCEEEEe
Q 020606 71 VLIELTSGNTGIGLAFIAASRGY-KLIIIMPST-----YSIERRIILRALGAEVYLA 121 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi-~~~vv~p~~-----~~~~~~~~~~~~Ga~v~~~ 121 (323)
.|+...+||.|.-+|..+.++|. +++++.+.. ......+.++..|.+++.-
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 47778899999999999999998 788876532 1334456677788887753
No 440
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=31.45 E-value=2.2e+02 Score=26.33 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=18.9
Q ss_pred CccEEEEecCCchhHHHHHHHHHhhCCCcEEEEEecC
Q 020606 174 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPS 210 (323)
Q Consensus 174 ~~d~vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv~~~ 210 (323)
++| +|+++|+|+.+ =+++++.... ..++|.|-+.
T Consensus 77 ~~d-~IIavGGGs~~-D~aK~ia~~~-~~p~i~VPTt 110 (349)
T cd08550 77 EAD-VIIGVGGGKTL-DTAKAVADRL-DKPIVIVPTI 110 (349)
T ss_pred CCC-EEEEecCcHHH-HHHHHHHHHc-CCCEEEeCCc
Confidence 455 56788877654 4455544322 3456666544
No 441
>PRK04148 hypothetical protein; Provisional
Probab=31.44 E-value=2.4e+02 Score=22.48 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=35.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (323)
.+++-..| +|.++|..-+..|..++.+ +.++..++.++..+.+++..+
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDD 66 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECc
Confidence 36777777 7777777777889877776 445667778888888777765
No 442
>PLN02253 xanthoxin dehydrogenase
Probab=31.40 E-value=2.9e+02 Score=24.15 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=26.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
+..+|+..+|.-|.++|......|..++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45688999999999999988888988777643
No 443
>PRK06720 hypothetical protein; Provisional
Probab=31.34 E-value=2.9e+02 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=22.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~ 99 (323)
+..+|+..++--|.++|......|.+++++-
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 4557777778788888887777776655543
No 444
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=31.20 E-value=3.5e+02 Score=23.45 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=33.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCCHHHHHHHHHCC
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYK-LIIIMPSTYSIERRIILRALG 115 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~-~~vv~p~~~~~~~~~~~~~~G 115 (323)
...+.++.+.++. ..|..|.++...|+.+|.+ ++++ ..+..+....+.+|
T Consensus 92 ~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 92 DAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 4445566665555 5688888888899999988 4443 22445566667777
No 445
>PRK09105 putative aminotransferase; Provisional
Probab=31.19 E-value=3.1e+02 Score=25.55 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=33.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.|+...++..+..++..+- .+-.-.|++|+-.-..-....+.+|++++.++-+
T Consensus 97 ~I~it~Gs~~ai~~~~~~l-~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~ 149 (370)
T PRK09105 97 HVMAYAGSSEPLNYAVLAF-TSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLR 149 (370)
T ss_pred hEEEcCChHHHHHHHHHHH-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCC
Confidence 3777777777777666443 2222335555544445566788899999988654
No 446
>PRK09126 hypothetical protein; Provisional
Probab=31.15 E-value=66 Score=30.04 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=26.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
|+...+|-.|.++|.+.++.|++++|+=.
T Consensus 6 viIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred EEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 77889999999999999999999999853
No 447
>PRK05650 short chain dehydrogenase; Provisional
Probab=31.11 E-value=3.5e+02 Score=23.46 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=36.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.+|+..+|.-|.++|..-...|.+++++...... +.....++..|.++..+..+
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 57 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCD 57 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 4788889999999999888889987776544321 12233455667777655443
No 448
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=31.01 E-value=3.6e+02 Score=23.51 Aligned_cols=51 Identities=33% Similarity=0.410 Sum_probs=32.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga 116 (323)
+.+.++...+|...+|..|.+++..|+.+|.+.+++. .++.+.+.++.+|+
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~ 182 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGA 182 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCC
Confidence 4445555655555578888888888888888755543 23445555566665
No 449
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=30.86 E-value=2.5e+02 Score=26.45 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=10.3
Q ss_pred CccEEEEecCCchhH
Q 020606 174 KVDAFIAGIGTGGTV 188 (323)
Q Consensus 174 ~~d~vvvp~G~Gg~~ 188 (323)
++| +|+++|+|+.+
T Consensus 87 ~~D-~IIaiGGGS~i 100 (382)
T PRK10624 87 GAD-YLIAIGGGSPQ 100 (382)
T ss_pred CCC-EEEEeCChHHH
Confidence 566 67789888765
No 450
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=30.68 E-value=1.6e+02 Score=25.48 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=37.9
Q ss_pred CCCCCCCeEEEEeCCCh----HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 63 GLITPGKTVLIELTSGN----TGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN----~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
|-+.+|...++++..|. .+..+++.+...|-+|+.|.-+..+..-++.++.+|..
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 34566666677764444 45555665557799998888777777777788888764
No 451
>PLN02477 glutamate dehydrogenase
Probab=30.56 E-value=4e+02 Score=25.58 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHH-cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 49 DRIAYSMIKDAED-KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 49 ~R~a~~~l~~a~~-~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
-||..+.+..+.+ .|. .....+|+.-.-||-|..+|......|.+++.+..
T Consensus 186 g~Gv~~~~~~~~~~~g~-~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 186 GRGVVFATEALLAEHGK-SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred hHHHHHHHHHHHHHcCC-CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 3677777777654 343 22234577778899999999999999988886654
No 452
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=30.49 E-value=4.7e+02 Score=24.71 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=33.3
Q ss_pred CeEEEEeCCChHHHHHHH---HH-HH-cCCe--EEEEeCCCCCHHHHHHHHHCCC
Q 020606 69 KTVLIELTSGNTGIGLAF---IA-AS-RGYK--LIIIMPSTYSIERRIILRALGA 116 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~---~a-~~-~Gi~--~~vv~p~~~~~~~~~~~~~~Ga 116 (323)
...+|+..+|--|..++. +| +. .+++ ..|+.-...|..+.+++...+.
T Consensus 220 ~~Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~ 274 (400)
T COG4671 220 FDILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAP 274 (400)
T ss_pred ceEEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcc
Confidence 355677777877765544 22 22 4676 7778777889998888887776
No 453
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=30.47 E-value=4.1e+02 Score=23.94 Aligned_cols=51 Identities=35% Similarity=0.552 Sum_probs=31.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 020606 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (323)
Q Consensus 62 ~g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga 116 (323)
...+.++...++. .+|..|.+++..|+.+|++++++.. +..+...++.+|+
T Consensus 154 ~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~ 204 (337)
T cd08261 154 RAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGA 204 (337)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCC
Confidence 3445555555555 4677788888888888887655532 2455555566664
No 454
>PRK05839 hypothetical protein; Provisional
Probab=30.46 E-value=4.5e+02 Score=24.41 Aligned_cols=79 Identities=13% Similarity=-0.107 Sum_probs=43.0
Q ss_pred CCCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 020606 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGAEVYL 120 (323)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~~~~~vv~~S~GN~g~a~A~~a~~~-Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~ 120 (323)
+.|....|.+...... ...|. +.+ +.|+..+++..+..++..+-.+ +-.-.|++|.-.-..-...++.+|++++.
T Consensus 59 ~~G~~~lr~aia~~l~-~~~g~~~~~--~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~ 135 (374)
T PRK05839 59 SAGEESLREAQRGFFK-RRFKIELKE--NELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLL 135 (374)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCc--ceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEE
Confidence 4577777765432221 12232 222 3477677777666554433322 22245555654444445556789999999
Q ss_pred eCCC
Q 020606 121 ADPA 124 (323)
Q Consensus 121 ~~~~ 124 (323)
++.+
T Consensus 136 v~~~ 139 (374)
T PRK05839 136 MPLT 139 (374)
T ss_pred eecc
Confidence 8653
No 455
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=30.43 E-value=4.3e+02 Score=24.27 Aligned_cols=54 Identities=31% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~ 119 (323)
+...++.+.+|. .+|--|.+++..|+.+|.+.+++... +..+...++.+|++.+
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 333455554444 56888888888899999875554332 2223344466888543
No 456
>PRK06753 hypothetical protein; Provisional
Probab=30.37 E-value=78 Score=29.32 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=26.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
|+...+|-.|.++|...++.|++++|+=.
T Consensus 3 V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 77788999999999999999999988753
No 457
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=30.35 E-value=1.9e+02 Score=26.32 Aligned_cols=50 Identities=28% Similarity=0.418 Sum_probs=32.7
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHCCCE
Q 020606 64 LITPGKTVLIELTSGNTGIGLAFIAASRG-YKLIIIMPSTYSIERRIILRALGAE 117 (323)
Q Consensus 64 ~~~~~~~~vv~~S~GN~g~a~A~~a~~~G-i~~~vv~p~~~~~~~~~~~~~~Ga~ 117 (323)
.+.++...+|. .+|..|.+++..|+.+| .++++ + +.+..+...++.+|++
T Consensus 163 ~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~ 213 (345)
T cd08286 163 KVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGAT 213 (345)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCC
Confidence 34455565664 46888888888999999 55443 3 2345666677777763
No 458
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=30.18 E-value=1.9e+02 Score=29.98 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=38.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCC---C--CHHHHHHHHHCCCEEEEe
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYK-LIIIMPST---Y--SIERRIILRALGAEVYLA 121 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~-~~vv~p~~---~--~~~~~~~~~~~Ga~v~~~ 121 (323)
.|+...+||.|.-+|..+.++|.+ ++++.+.. . ....+..++..|.+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 488889999999999999999998 88887543 1 223345567778877653
No 459
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=30.10 E-value=3.5e+02 Score=23.12 Aligned_cols=50 Identities=26% Similarity=0.271 Sum_probs=33.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH-HHCCCEEEEeCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL-RALGAEVYLADP 123 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~-~~~Ga~v~~~~~ 123 (323)
.+|+..+|..|.++|......|.+++++... +.++..+ ...+.++..+..
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~ 53 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQL 53 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEe
Confidence 4788899999999999998899987666432 2333332 234556554443
No 460
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=30.10 E-value=75 Score=30.04 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=24.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
|+.-.+|..|.+.|..|+..|.+++|+-...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 6778899999999999999999888886443
No 461
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=30.04 E-value=2.1e+02 Score=20.53 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=37.4
Q ss_pred eEEEEeCCChHHHHH--HHHHHHcCCeEEEEeCCCCCHHHHHHHHHC-CCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGL--AFIAASRGYKLIIIMPSTYSIERRIILRAL-GAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~--A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~-Ga~v~~~~~~ 124 (323)
..++.+++-|+.-++ +..|.+.+.|..++- ...+......++.+ ..+|+.+++.
T Consensus 26 ~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~iiGg~ 82 (92)
T PF04122_consen 26 DKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYIIGGE 82 (92)
T ss_pred CEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEECCC
Confidence 447777776655444 447777888887776 77777777777776 5577777665
No 462
>PRK07774 short chain dehydrogenase; Provisional
Probab=29.90 E-value=3.5e+02 Score=23.00 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=34.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHCCCEEEEe
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRALGAEVYLA 121 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~-~~~~~~~~Ga~v~~~ 121 (323)
++.+|+..+|--|.++|......|.+++++........ ....++..+.++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAV 60 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 45688889999999999988889998777654322111 122344445555444
No 463
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=29.87 E-value=1.8e+02 Score=26.62 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=42.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC----HHHHHHHHHCCCEEEEeCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS----IERRIILRALGAEVYLADP 123 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~----~~~~~~~~~~Ga~v~~~~~ 123 (323)
++|.|.|.+.+..++=..|+..|.+..||+-++-| ..-.+.++.+|-++..+..
T Consensus 121 ~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~D 178 (301)
T COG1184 121 DVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVD 178 (301)
T ss_pred CEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEec
Confidence 55899998888888888999999888888855533 3456788999988888754
No 464
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=29.86 E-value=2.6e+02 Score=25.40 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=33.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++..++|..+..++..+-..+-.-.|++|..........++..|++++.++.+
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDID 88 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecC
Confidence 44455666665555544322333467777776666777788889999888654
No 465
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=29.77 E-value=3.8e+02 Score=23.44 Aligned_cols=51 Identities=29% Similarity=0.332 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga 116 (323)
+.+.++...+|...+|..|.+++..++..|.+.++..+. ..+.+.++.+|+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~ 190 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGA 190 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCC
Confidence 344555665666667888888888888888775554332 344444555555
No 466
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=29.77 E-value=3.6e+02 Score=24.37 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=33.4
Q ss_pred EEEeCCChHHHHHHHHHHHc-------------CCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASR-------------GYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~-------------Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++..++|..+..+|..+.+. +-+.+|+++...-......++.+|++++.++.+
T Consensus 60 ~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~ 125 (345)
T cd06450 60 GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVD 125 (345)
T ss_pred EEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeC
Confidence 55567777777666655421 224577777655455555666679999888643
No 467
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=29.66 E-value=3.8e+02 Score=23.32 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=33.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCC
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA 116 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga 116 (323)
+.+.++...+|...+|..|.+++..++..|.+.+++.+. . +...++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~-~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA---A-NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc---h-hHHHHHHcCC
Confidence 335556565555556889999999999999987666542 2 4455566775
No 468
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=29.58 E-value=4.1e+02 Score=23.69 Aligned_cols=52 Identities=31% Similarity=0.377 Sum_probs=32.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH-CCCE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRA-LGAE 117 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~-~Ga~ 117 (323)
+.+.++...+|...+|-.|.+++..|+.+|.+.+++.+ +..+...++. +|++
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 34455555455555788888888888888887555432 2345555555 6763
No 469
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=29.49 E-value=3.1e+02 Score=24.98 Aligned_cols=51 Identities=10% Similarity=-0.213 Sum_probs=33.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
.|+..+++..+..++... ++- ..++++.-+-..-....+.+|++++.++-+
T Consensus 59 ~I~it~Gs~~~l~~~~~~--~~~-~~vv~~~P~y~~y~~~~~~~G~~v~~vp~~ 109 (332)
T PRK06425 59 KVLIGPGLTHFIYRLLSY--INV-GNIIIVEPNFNEYKGYAFTHGIRISALPFN 109 (332)
T ss_pred eEEECCCHHHHHHHHHHH--hCC-CcEEEeCCChHHHHHHHHHcCCeEEEEeCC
Confidence 377777888887776642 332 235555544555666778899999998753
No 470
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=29.48 E-value=2.3e+02 Score=26.84 Aligned_cols=50 Identities=22% Similarity=0.151 Sum_probs=31.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHC
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGY--KLIIIMPSTYSIERRIILRAL 114 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi--~~~vv~p~~~~~~~~~~~~~~ 114 (323)
..+.++.+.+|...+|--|..++..|+.+|. ..++++ ..++.|++..+.+
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 3455666655555678889888888888775 223333 3345667666665
No 471
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=29.46 E-value=2.2e+02 Score=30.86 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=38.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------CH----HHHHHHHHCCCEEEE
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY--------------SI----ERRIILRALGAEVYL 120 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~--------------~~----~~~~~~~~~Ga~v~~ 120 (323)
..|+.-.+|..|.+.|++.++.|.+++||=+... +. ..++.++.+|.+++.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 3488889999999999999999999999864321 11 224567778888765
No 472
>PRK07576 short chain dehydrogenase; Provisional
Probab=29.26 E-value=3.8e+02 Score=23.26 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=35.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHCCCEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYS-IERRIILRALGAEVYLAD 122 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~-~~~~~~~~~~Ga~v~~~~ 122 (323)
+..+|+..+|.-|.++|......|..++++-..... ......+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 466888888999999999888889887666543211 112234455566665444
No 473
>PRK12742 oxidoreductase; Provisional
Probab=29.15 E-value=2.4e+02 Score=23.83 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=35.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHH-HHHCCCEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRII-LRALGAEVYLADP 123 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~-~~~~Ga~v~~~~~ 123 (323)
+..+|+..+|.-|.++|......|.++++..... ..+.+. ....+.+.+.++-
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecCC
Confidence 4668888899999999998888899876654332 222222 2445776665553
No 474
>PRK07023 short chain dehydrogenase; Provisional
Probab=29.12 E-value=3.2e+02 Score=23.20 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=35.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
+.+|+..+|.-|.++|......|.+++++.....+. .....|.++..+..+
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~D 53 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS----LAAAAGERLAEVELD 53 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh----hhhccCCeEEEEEec
Confidence 358889999999999998888899987775443221 133456666655433
No 475
>PRK08339 short chain dehydrogenase; Provisional
Probab=29.04 E-value=3.7e+02 Score=23.39 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=26.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
+..+|+.++|.-|.++|......|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46688888899999999999999998776643
No 476
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=28.97 E-value=5.6e+02 Score=25.11 Aligned_cols=75 Identities=15% Similarity=-0.005 Sum_probs=41.5
Q ss_pred CCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 020606 44 CSSVKDRIAYSMIKDAEDKGL--ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (323)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~--~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 121 (323)
.|....|.+..... ...+. +.+ +.|+..+++..+..++..+- ++-.-.|++|.-.-..-....+..|++++.+
T Consensus 185 ~G~~~lReaia~~~--~~~~~~~~~~--~~I~it~G~~eal~~~~~~l-~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~ 259 (517)
T PRK13355 185 KGLFSARKAIMQYA--QLKGLPNVDV--DDIYTGNGVSELINLSMSAL-LDDGDEVLIPSPDYPLWTACVNLAGGTAVHY 259 (517)
T ss_pred cChHHHHHHHHHHH--HhcCCCCCCh--hHEEEeCcHHHHHHHHHHHh-CCCCCEEEEcCCCCcCHHHHHHHCCCEEEEe
Confidence 35566665533322 22332 232 33777777777777666432 3322345555543344456677899999887
Q ss_pred CC
Q 020606 122 DP 123 (323)
Q Consensus 122 ~~ 123 (323)
+.
T Consensus 260 ~~ 261 (517)
T PRK13355 260 RC 261 (517)
T ss_pred ec
Confidence 53
No 477
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=28.97 E-value=1.8e+02 Score=26.35 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=39.9
Q ss_pred CCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcC--CCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 020606 28 DGCV-ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG--LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 28 ~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g--~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~ 99 (323)
+..| +|-.++.++-.-.|-|.|=...... ..+.+ ....++ .++...+|-.++|++++....|.+-+.|+
T Consensus 85 ~~iGAVNTl~~~~~g~l~G~NTD~~G~~~~--L~~~~~~~~~~~~-~vlilGAGGAarAv~~aL~~~g~~~i~V~ 156 (283)
T COG0169 85 RLIGAVNTLVREDDGKLRGYNTDGIGFLRA--LKEFGLPVDVTGK-RVLILGAGGAARAVAFALAEAGAKRITVV 156 (283)
T ss_pred HHhCCceEEEEccCCEEEEEcCCHHHHHHH--HHhcCCCcccCCC-EEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 3456 4655555444446667765432221 12212 222233 47778888899999999999997544444
No 478
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=28.85 E-value=3.8e+02 Score=23.12 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
+..+|+..++.-|.++|......|.+++++..
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 56688888899999999988889998766544
No 479
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=28.70 E-value=2.9e+02 Score=25.68 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCCCC--HHHHH----HHHHCCCEEEEeC
Q 020606 79 NTGIGLAFIAASRGYKLIIIMPSTYS--IERRI----ILRALGAEVYLAD 122 (323)
Q Consensus 79 N~g~a~A~~a~~~Gi~~~vv~p~~~~--~~~~~----~~~~~Ga~v~~~~ 122 (323)
|.+.++...++++|++++++-|+... ...+. ..+..|+++...+
T Consensus 168 ~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 168 NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 67777777778888888887777632 22222 2344566665543
No 480
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=28.69 E-value=1.3e+02 Score=21.61 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=24.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~ 103 (323)
...|+.+.+|+.+...|...+.+|++ +.++..+.
T Consensus 57 ~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~ 90 (95)
T cd01534 57 ARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGL 90 (95)
T ss_pred CeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcH
Confidence 34466677788887777778899999 55565543
No 481
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=28.68 E-value=1.9e+02 Score=25.56 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=12.4
Q ss_pred CCCEEEEeCCCCChhHHHHHHHHHHHh
Q 020606 114 LGAEVYLADPAVGFEGFVKKGEEILNR 140 (323)
Q Consensus 114 ~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 140 (323)
.||+|.-++-+ ....+.|+..+.+
T Consensus 80 ~Ga~VtgiD~s---e~~I~~Ak~ha~e 103 (243)
T COG2227 80 LGASVTGIDAS---EKPIEVAKLHALE 103 (243)
T ss_pred CCCeeEEecCC---hHHHHHHHHhhhh
Confidence 45556555543 3445555555444
No 482
>PRK07856 short chain dehydrogenase; Provisional
Probab=28.67 E-value=3.5e+02 Score=23.13 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=27.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPS 101 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~ 101 (323)
+..+|+..+|--|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 466888889999999999888889987776543
No 483
>PRK05693 short chain dehydrogenase; Provisional
Probab=28.60 E-value=4e+02 Score=23.22 Aligned_cols=52 Identities=27% Similarity=0.192 Sum_probs=37.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 70 ~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
..+|+..+|--|.++|......|.+++++... ..+...+...+.+.+.++-.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~ 54 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN 54 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC
Confidence 45788888999999999888899887776543 34455555567766666543
No 484
>PRK08354 putative aminotransferase; Provisional
Probab=28.54 E-value=4.4e+02 Score=23.69 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=33.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
|+..+++..+..++...-.-| -.|++|.-+-..-...++.+|++++.++.+
T Consensus 57 I~vt~G~~~al~~~~~~~~~g--d~vlv~~P~y~~~~~~~~~~g~~~~~~~~d 107 (311)
T PRK08354 57 IVITAGITEALYLIGILALRD--RKVIIPRHTYGEYERVARFFAARIIKGPND 107 (311)
T ss_pred EEECCCHHHHHHHHHHhhCCC--CeEEEeCCCcHHHHHHHHHcCCEEeecCCC
Confidence 777777788876554322233 345566655566677778899999887543
No 485
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=28.37 E-value=1.4e+02 Score=27.29 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=37.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~ 122 (323)
.|+..++..++..++..+...+-...|++|.-.-..-...++..|.+++.++
T Consensus 70 ~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~ 121 (363)
T PF00155_consen 70 NILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVP 121 (363)
T ss_dssp GEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEE
T ss_pred EEEEecccccchhhhhhcccccccccceecCCccccccccccccCceeeecc
Confidence 3777777777777776666433344566666666667888889999999887
No 486
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=28.31 E-value=4.5e+02 Score=25.83 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=55.8
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCe
Q 020606 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG 144 (323)
Q Consensus 65 ~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (323)
...|+ +++....|+-|+++|..++.+|.+++++-+. +.+.......|+++.. +++ +.+.. +.
T Consensus 251 ~LaGK-tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~d---p~~a~~A~~~G~~~~~------lee-------ll~~A-DI 312 (476)
T PTZ00075 251 MIAGK-TVVVCGYGDVGKGCAQALRGFGARVVVTEID---PICALQAAMEGYQVVT------LED-------VVETA-DI 312 (476)
T ss_pred CcCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC---chhHHHHHhcCceecc------HHH-------HHhcC-CE
Confidence 33444 5888899999999999999999985554222 2222223335776431 222 22222 44
Q ss_pred EeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCch
Q 020606 145 YILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186 (323)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~Gg 186 (323)
+.... . ....+..|.++++ ++..+++-+|-|-
T Consensus 313 VI~at-G-------t~~iI~~e~~~~M--KpGAiLINvGr~d 344 (476)
T PTZ00075 313 FVTAT-G-------NKDIITLEHMRRM--KNNAIVGNIGHFD 344 (476)
T ss_pred EEECC-C-------cccccCHHHHhcc--CCCcEEEEcCCCc
Confidence 44332 1 1123445777776 5678999998885
No 487
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=28.29 E-value=92 Score=28.50 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=26.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPST 102 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~ 102 (323)
|+.-.+|-.|.+.|.++++.|++++++....
T Consensus 6 viIIG~GPAGl~AAiya~r~~l~~~li~~~~ 36 (305)
T COG0492 6 VIIIGGGPAGLTAAIYAARAGLKVVLILEGG 36 (305)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcEEEEecC
Confidence 7778999999999999999999977776543
No 488
>PRK07326 short chain dehydrogenase; Provisional
Probab=28.25 E-value=3.6e+02 Score=22.66 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=26.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMP 100 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p 100 (323)
...+|+..+|.-|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 45688888999999999988888999777654
No 489
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.20 E-value=5.2e+02 Score=24.46 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCChhhHHHHHHHHHHHHcC-CCCCCCeEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCCHHHHHHHHHCCCEEEEe
Q 020606 44 CSSVKDRIAYSMIKDAEDKG-LITPGKTVLIELTSGNTGIGLAFIAASR-GYKLIIIMPSTYSIERRIILRALGAEVYLA 121 (323)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g-~~~~~~~~vv~~S~GN~g~a~A~~a~~~-Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~ 121 (323)
.|.-..|-+..--.. .+.| ...+. ..|+...++..|..++..+-.- |=.+ ++|.-.=+.-...++..|++++.+
T Consensus 65 ~G~~~LReaia~~~~-~~~~~~~~~~-~eiivt~Ga~~al~~~~~a~~~pGDeV--lip~P~Y~~y~~~~~~~gg~~v~v 140 (393)
T COG0436 65 AGIPELREAIAEKYK-RRYGLDVDPE-EEIIVTAGAKEALFLAFLALLNPGDEV--LIPDPGYPSYEAAVKLAGGKPVPV 140 (393)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCCCC-CeEEEeCCHHHHHHHHHHHhcCCCCEE--EEeCCCCcCHHHHHHhcCCEEEEE
Confidence 477777765433222 2233 22332 3277777888888877755443 3343 344433344566778899999998
Q ss_pred CCC---CChhHHHHHHHHHHHhCCCeEeeCCCCCCC
Q 020606 122 DPA---VGFEGFVKKGEEILNRTPNGYILGQFENPA 154 (323)
Q Consensus 122 ~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (323)
+-. .+|.-..+...+...++-...+++.-+||.
T Consensus 141 ~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPT 176 (393)
T COG0436 141 PLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPT 176 (393)
T ss_pred eCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCc
Confidence 732 134433443333333323566664334443
No 490
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.19 E-value=2.9e+02 Score=24.83 Aligned_cols=55 Identities=7% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCeEEEEe---CCC-CCHH----HHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhC
Q 020606 83 GLAFIAASRGYKLIIIM---PST-YSIE----RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT 141 (323)
Q Consensus 83 a~A~~a~~~Gi~~~vv~---p~~-~~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (323)
++.|.++++|++.+-+. |+. .++. -++.++..|.++++++.. +.. +.++.++++.
T Consensus 186 af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~--~~~--~~~~~ia~~~ 248 (287)
T cd01137 186 AFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVEST--VND--RLMKQVAKET 248 (287)
T ss_pred cHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC--CCh--HHHHHHHHHh
Confidence 78899999999987654 222 2332 345678899999999875 222 3445555554
No 491
>PRK09242 tropinone reductase; Provisional
Probab=28.19 E-value=3.8e+02 Score=22.95 Aligned_cols=56 Identities=21% Similarity=0.156 Sum_probs=35.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHH-HHHHHHHC--CCEEEEeCCC
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIE-RRIILRAL--GAEVYLADPA 124 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~-~~~~~~~~--Ga~v~~~~~~ 124 (323)
+..+|+..+|.-|.++|......|.+++++........ ....++.. +.++..+..+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D 68 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECC
Confidence 46688888899999999988888988766654321111 12223333 5677665443
No 492
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.18 E-value=3.8e+02 Score=22.93 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=62.7
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCC
Q 020606 73 IELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFEN 152 (323)
Q Consensus 73 v~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (323)
|+.++-|.-.++....+.+. ++.|=.-.-.+....+.....||+.+..+.. -.+..+.+ .+. +..+++
T Consensus 39 it~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~--~~~v~~~~----~~~-~i~~iP---- 106 (204)
T TIGR01182 39 VTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGL--TPELAKHA----QDH-GIPIIP---- 106 (204)
T ss_pred EeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCC--CHHHHHHH----HHc-CCcEEC----
Confidence 44566666666777776665 4444333445667777777788888877653 12333333 333 444443
Q ss_pred CCchhhhhhchHHHHHHhhCCCccE-EEEecCCchhHHHHHHHHHhhCCCcEEEEE
Q 020606 153 PANPEIHYETTGPEIWNDSGGKVDA-FIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207 (323)
Q Consensus 153 ~~~~~~g~~t~~~Ei~~q~~~~~d~-vvvp~G~Gg~~aGi~~~~~~~~~~~~vigv 207 (323)
| ..+-.|+.+.+....|. =+.|.+..|.. ...++++.-.|+.+++.+
T Consensus 107 ------G-~~TptEi~~A~~~Ga~~vKlFPA~~~GG~-~yikal~~plp~i~~~pt 154 (204)
T TIGR01182 107 ------G-VATPSEIMLALELGITALKLFPAEVSGGV-KMLKALAGPFPQVRFCPT 154 (204)
T ss_pred ------C-CCCHHHHHHHHHCCCCEEEECCchhcCCH-HHHHHHhccCCCCcEEec
Confidence 2 22344776655434444 35676533211 334566666677777633
No 493
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=28.11 E-value=3.9e+02 Score=23.02 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=25.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~ 99 (323)
+..+|+..+|--|.++|......|.+++++-
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLE 37 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4668888889999999998889999876654
No 494
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=28.05 E-value=4.9e+02 Score=24.47 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=10.2
Q ss_pred CCccEEEEecCCchhH
Q 020606 173 GKVDAFIAGIGTGGTV 188 (323)
Q Consensus 173 ~~~d~vvvp~G~Gg~~ 188 (323)
.++|. |+++|+|+.+
T Consensus 78 ~~~D~-IIaiGGGS~i 92 (386)
T cd08191 78 AGPDV-IIGLGGGSCI 92 (386)
T ss_pred cCCCE-EEEeCCchHH
Confidence 35665 6788888765
No 495
>PRK05872 short chain dehydrogenase; Provisional
Probab=28.05 E-value=3.8e+02 Score=23.88 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=25.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 020606 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIM 99 (323)
Q Consensus 69 ~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~ 99 (323)
+..+|+..+|.-|.++|......|.+++++-
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVD 40 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5668888999999999999999998766654
No 496
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=28.04 E-value=3.4e+02 Score=22.34 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=36.8
Q ss_pred HHCCCEEEEeCCCCChhHHHHHHHHHHHhCCCeEeeCCCCCCCchhhhhhchHHHHHHhhCCCccEEEEecCCc
Q 020606 112 RALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 185 (323)
Q Consensus 112 ~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vvvp~G~G 185 (323)
..+|.+++.-+.. +...+++.+.+.......++++.+.+.|.... . .-.++++++ ...+.+++|.-.|
T Consensus 62 ~~~~v~~i~~~~~-G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~-~---~i~~l~~~~-~~~~~vi~p~~~G 129 (195)
T TIGR03552 62 RNLGAPVLRDPGP-GLNNALNAALAEAREPGGAVLILMADLPLLTP-R---ELKRLLAAA-TEGDVVIAPDRGG 129 (195)
T ss_pred HhcCCEEEecCCC-CHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH-H---HHHHHHHhc-ccCCEEEEecCCC
Confidence 3455555433221 35566666655433322466777777776653 1 223455554 2457888888665
No 497
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=28.02 E-value=4.6e+02 Score=23.82 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=27.0
Q ss_pred EEEeCCChHHHHHHHHHH-HcCCeEEEEeCC--CCCHHHHHHHHHCCCEEEEeCCC
Q 020606 72 LIELTSGNTGIGLAFIAA-SRGYKLIIIMPS--TYSIERRIILRALGAEVYLADPA 124 (323)
Q Consensus 72 vv~~S~GN~g~a~A~~a~-~~Gi~~~vv~p~--~~~~~~~~~~~~~Ga~v~~~~~~ 124 (323)
++..++|..+..++..+- .-|- .|+++. ..+..-....+..|++++.++.+
T Consensus 53 ~~~~~~~t~al~~~~~~~~~~g~--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 106 (356)
T cd06451 53 FLLSGSGTGAMEAALSNLLEPGD--KVLVGVNGVFGDRWADMAERYGADVDVVEKP 106 (356)
T ss_pred EEEecCcHHHHHHHHHHhCCCCC--EEEEecCCchhHHHHHHHHHhCCCeEEeecC
Confidence 444555555555555332 2243 333333 22222345678899999998654
No 498
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=27.93 E-value=2.8e+02 Score=25.81 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=34.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHCCCEE
Q 020606 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118 (323)
Q Consensus 63 g~~~~~~~~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~~~~~~~~~~~~Ga~v 118 (323)
+.+.++...+|. ..|..|.+++..|+.+|...++++.. ++.+.+..+.+|++-
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~ 251 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADY 251 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCE
Confidence 345566665555 56888888888999999854444422 334777777788743
No 499
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=27.93 E-value=2.9e+02 Score=21.48 Aligned_cols=52 Identities=33% Similarity=0.339 Sum_probs=30.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEe-CCCCCHH----HHHHHHHCCCEEEEeC
Q 020606 71 VLIELTSGNTGIGLAFIAASRGYKLIIIM-PSTYSIE----RRIILRALGAEVYLAD 122 (323)
Q Consensus 71 ~vv~~S~GN~g~a~A~~a~~~Gi~~~vv~-p~~~~~~----~~~~~~~~Ga~v~~~~ 122 (323)
.+++..+|..|.+++......|...++++ ....+.. .+..++..|.++..+.
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVA 59 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEE
Confidence 46777888899999988888887544443 3222111 1244445566655443
No 500
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=27.93 E-value=2.2e+02 Score=27.40 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=24.3
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 020606 75 LTSGNTGIGLAFIAASRGYKLIIIMPSTY 103 (323)
Q Consensus 75 ~S~GN~g~a~A~~a~~~Gi~~~vv~p~~~ 103 (323)
..-|.+..+|+.+-++.|.++.|++|.-.
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 34478889999999999999999999753
Done!