Your job contains 1 sequence.
>020607
MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLL
SLSYFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNL
PYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG
GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP
GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVL
PAAKETKTENSIDGSELLSSIST
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020607
(323 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 754 9.3e-75 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 396 8.0e-37 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 389 4.4e-36 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 375 1.3e-34 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 350 6.0e-32 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 344 2.6e-31 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 315 3.1e-28 1
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 297 2.5e-26 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 273 3.0e-23 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 254 4.8e-21 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 252 4.9e-21 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 238 8.5e-20 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 237 1.3e-19 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 237 1.3e-19 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 232 5.7e-19 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 236 6.7e-19 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 231 2.2e-18 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 231 2.3e-18 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 225 6.2e-18 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 228 6.3e-18 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 225 7.4e-18 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 219 1.2e-17 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 219 1.2e-17 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 224 1.3e-17 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 216 1.5e-17 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 217 1.7e-17 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 216 2.6e-17 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 212 2.7e-17 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 216 2.7e-17 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 221 2.8e-17 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 217 2.9e-17 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 215 3.4e-17 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 212 3.6e-17 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 215 3.7e-17 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 220 3.7e-17 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 210 4.1e-17 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 220 4.2e-17 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 220 4.2e-17 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 220 4.3e-17 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 217 5.1e-17 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 217 5.1e-17 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 217 5.1e-17 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 217 5.2e-17 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 217 5.3e-17 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 217 5.3e-17 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 217 5.3e-17 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 217 5.3e-17 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 212 5.9e-17 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 218 6.1e-17 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 218 6.4e-17 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 207 8.6e-17 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 212 8.9e-17 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 216 9.7e-17 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 206 1.1e-16 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 207 1.3e-16 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 211 1.4e-16 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 214 1.5e-16 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 212 1.8e-16 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 213 1.8e-16 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 213 1.8e-16 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 212 1.8e-16 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 212 1.8e-16 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 210 1.9e-16 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 212 1.9e-16 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 212 2.0e-16 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 212 2.1e-16 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 213 2.1e-16 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 213 2.1e-16 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 213 2.1e-16 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 213 2.1e-16 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 213 2.1e-16 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 212 2.1e-16 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 212 2.1e-16 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 212 2.1e-16 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 213 2.1e-16 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 213 2.1e-16 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 203 2.3e-16 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 211 2.3e-16 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 210 2.8e-16 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 208 3.2e-16 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 211 3.4e-16 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 207 3.6e-16 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 201 3.7e-16 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 209 4.6e-16 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 200 4.7e-16 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 200 4.7e-16 1
TAIR|locus:2122368 - symbol:AT4G09040 species:3702 "Arabi... 200 4.7e-16 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 206 4.8e-16 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 208 5.1e-16 1
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 206 5.2e-16 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 205 5.3e-16 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 205 5.5e-16 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 209 5.5e-16 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 209 5.5e-16 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 209 5.5e-16 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 202 5.9e-16 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 199 6.0e-16 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 208 7.1e-16 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 203 7.5e-16 1
UNIPROTKB|G4MYV6 - symbol:MGG_11418 "Nucleic acid-binding... 198 7.7e-16 1
WARNING: Descriptions of 1194 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 142/212 (66%), Positives = 181/212 (85%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLPY++TSS L+++F EAGTV +IVYD+VTDRSRGFGFVTMGS+EEAKEA+++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
F+ SQIGGRTVKVNFPEVPRGGE M K++++ + +VDSPHK+YAGNLGW LTSQGL+
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
DAF QPG+L AKVI+ER TGRSRGFGF++FE+AE++QSAL MNGVEVEGR LRLN+A+
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLAS 296
Query: 294 ERAPPVL--PAAKETKTEN-SIDGSELLSSIS 322
ER P + P+ +E +TE S++ +E+LS++S
Sbjct: 297 EREKPTVSPPSVEEGETEEASLESNEVLSNVS 328
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 75/194 (38%), Positives = 129/194 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+++ S+ LA++F AG V E++YD++T RSRGFGFVTM SV E + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 174 FDGSQIGGRTVKVNF-PEVPRGGERAAMGPKLQ--NSYQGF-------VDSPHKIYAGNL 223
F+G ++ GR ++VN P P+ + + GP+ +S G+ S +++Y GNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283
WG+ L F Q ++ A+VI++R +GRS+GFGFVT+++++++Q+A+ +++G +++
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 284 GRPLRLNMANERAP 297
GR +R++ A R P
Sbjct: 272 GRQIRVSEAEARPP 285
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 80/185 (43%), Positives = 118/185 (63%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A+
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
F+ + GR + VN PRG R P++ Y+ ++Y GNL W + + L
Sbjct: 210 KFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV---YE----PAFRVYVGNLPWDVDNGRL 260
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G +EGR +R+N+A
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Query: 293 NERAP 297
ER P
Sbjct: 321 EERPP 325
Score = 217 (81.4 bits), Expect = 7.6e-18, P = 7.6e-18
Identities = 44/86 (51%), Positives = 56/86 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 172 RLFDGSQIGGRTVKVNFPEV--PRGG 195
DG + GR ++VN E PR G
Sbjct: 303 SALDGQNLEGRAIRVNVAEERPPRRG 328
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 79/183 (43%), Positives = 118/183 (64%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGNLPY + S +LA +F +AGTV +E++Y+R TD+SRGFGFVTM +VEEA++A+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
F+ ++ GR + VN PRG R P++ Y D+ +IY GNL W + S L
Sbjct: 173 KFNSFEVNGRRLTVN-RAAPRGS-RPERQPRV---Y----DAAFRIYVGNLPWDVDSGRL 223
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
F ++ A+V+ +R TGRSRGFGFV ++ A+ A++G +EGR +++N+A
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Query: 293 NER 295
ER
Sbjct: 284 EER 286
Score = 191 (72.3 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 39/79 (49%), Positives = 48/79 (60%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + S L +F+E G V A +V DR T RSRGFGFV M + E AI
Sbjct: 206 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Query: 172 RLFDGSQIGGRTVKVNFPE 190
DG + GR +KVN E
Sbjct: 266 AALDGQNLEGRAIKVNVAE 284
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 69/179 (38%), Positives = 116/179 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY++ S++LA++ + E++Y+R T +SRGF FVTM +VE+ I
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
DG++ GR +KVNF + P+ P + Y ++ HK++ GNL W +TS+ L
Sbjct: 146 LDGTEYLGRALKVNFADKPK--------PNKEPLYP---ETEHKLFVGNLSWTVTSESLA 194
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
AF+ ++ A+V+F+ TGRSRG+GFV + + ++++AL++++G E+EGR +R+N+A
Sbjct: 195 GAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 174 (66.3 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SLA F E G V A +V+D T RSRG+GFV S E + A+
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR ++VN +
Sbjct: 238 LDGFELEGRAIRVNLAQ 254
Score = 147 (56.8 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 35/93 (37%), Positives = 51/93 (54%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQ--GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
K+Y GNL + + S L Q P L+ +V++ R TG+SRGF FVT ED +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELV--EVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Query: 275 DAMNGVEVEGRPLRLNMANERAPPVLPAAKETK 307
D ++G E GR L++N A++ P P ET+
Sbjct: 144 DNLDGTEYLGRALKVNFADKPKPNKEPLYPETE 176
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 71/181 (39%), Positives = 110/181 (60%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+Y+GN+P ++T+ L ++ E G V +++YD+ + RSR FGF TM SVE+A +
Sbjct: 75 ARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G+ + GR +KVN E P LQ+ FVDSP+K+Y GNL +T +
Sbjct: 135 EKLNGNTVEGREIKVNITEKPIASSPDLS--VLQSEDSAFVDSPYKVYVGNLAKTVTKEM 192
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L + F + ++SAKV T +S GFGFVTF + ED+++A+ A+N +EG+ +R+N
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNK 252
Query: 292 A 292
A
Sbjct: 253 A 253
Score = 143 (55.4 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 28/99 (28%), Positives = 58/99 (58%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
++ ++Y GN+ +T++ L + + +V++++Y+GRSR FGF T ++ ED +
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 273 ALDAMNGVEVEGRPLRLNMANERAPPVLPAAKETKTENS 311
++ +NG VEGR +++N+ E+ P ++E+S
Sbjct: 133 VVEKLNGNTVEGREIKVNIT-EKPIASSPDLSVLQSEDS 170
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 75/204 (36%), Positives = 118/204 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+V NLP+SM+ + ++E+F + GTV + EI+ + ++RGF FVTM S EEA+ AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDK 154
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
FD Q+ GR + V+F R + P L + G D+ HK+Y NL W S L
Sbjct: 155 FDTFQVSGRIISVSFAR--RFKKPTPKSPNDLPSPAPG--DTRHKLYVSNLAWKARSTHL 210
Query: 233 RDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
R+ F +SA+V+F GRS G+GFV+F T E+ ++A+ +NG E+ GRP+ L
Sbjct: 211 RELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKF 270
Query: 292 ANERAPPVLPAAKETKTENSIDGS 315
+ L +A E++ +S++ +
Sbjct: 271 S-------LRSASESEDGDSVEAN 287
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 70/186 (37%), Positives = 107/186 (57%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY-DRVTDRSRGFGFVTMGSVEEAKEAIRL 173
LYV N+P S + L ++F GTV S E+V + T SRG G+VTMGS+ AK AI
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV---DSPHKIYAGNLGWGLTSQ 230
DG+++GGR ++V + G R P++ NS + +S HK+Y GNL W
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTRR--NPEVLNSTPKKILMYESQHKVYVGNLPWFTQPD 227
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
GLR+ F ++S +V+ +R TGR+R F F++F + E+ +AL + NG + EGR + +
Sbjct: 228 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNGTQYEGRRIIVR 286
Query: 291 MANERA 296
E++
Sbjct: 287 EGIEKS 292
Score = 132 (51.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLP+ L F++ GT+ S +++DR T R+R F F++ S EE ++A
Sbjct: 214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 272
Query: 174 FDGSQIGGRTVKV 186
F+G+Q GR + V
Sbjct: 273 FNGTQYEGRRIIV 285
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 273 (101.2 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 65/185 (35%), Positives = 101/185 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL +++ + LAE F GTV SA ++ DR + RS+GFG+V + EEA++A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQGL 232
G+ I GR +KV+F A G + + Y G SP ++ GNL + +
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSNDAAGARAKK-Y-GDTVSPESDTLFVGNLPFDADEDSV 358
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
F + S ++ E+ +GR +GFG+VTF + ED +SA + +NG + GR RL+ +
Sbjct: 359 GAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYS 418
Query: 293 NERAP 297
R P
Sbjct: 419 TPRPP 423
Score = 151 (58.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 33/115 (28%), Positives = 57/115 (49%)
Query: 182 RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241
+ K P R E P + + D P ++ GNL W + L + F+
Sbjct: 206 KPAKTEAPSKKRKAEEEEEAPAKKTKTEES-DKPSTLFVGNLSWNVDDAMLAEEFKFCGT 264
Query: 242 LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ SA+VI +R +GRS+GFG+V F T E+ + A G ++GR ++++ + +A
Sbjct: 265 VTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKA 319
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 254 (94.5 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 56/190 (29%), Positives = 103/190 (54%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A L+VGNL +++T L + F + G + SA I+ +R T RSRGFG+V + +A +A
Sbjct: 276 SANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAY 334
Query: 172 RLFDGSQIGGRTVKVNFPEV-PRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
+I GR + +++ P ++ + QN + F D SP ++ GNL +
Sbjct: 335 EAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFS 394
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
+ + F Q +L ++ + +GR +GFG+V + + ++ + A + + G E++GRP
Sbjct: 395 ANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRP 454
Query: 287 LRLNMANERA 296
+RL+ + RA
Sbjct: 455 IRLDFSTPRA 464
Score = 158 (60.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNLP+S S+ EVF G V + D + R +GFG+V SV+EA++A
Sbjct: 386 LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNEL 445
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMG 201
G++I GR ++++F P GG G
Sbjct: 446 QGAEIDGRPIRLDFSTPRANNGGGGGGRG 474
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 252 (93.8 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 60/181 (33%), Positives = 99/181 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL ++T L + F G +A+ +I+ D+ +++ + FV +A A++
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL 135
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G QI VK+N+ Q S Q D ++ G+L + + LR+
Sbjct: 136 NGKQIENNIVKINWA--------------FQ-SQQSSSDDTFNLFVGDLNVNVDDETLRN 180
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF+ P LS V+++ TG SRG+GFV+F + +D Q+A+D+M G ++ GRPLR+N A +
Sbjct: 181 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Query: 295 R 295
R
Sbjct: 241 R 241
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 238 (88.8 bits), Expect = 8.5e-20, P = 8.5e-20
Identities = 62/205 (30%), Positives = 111/205 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L M + + VFA++G SA+++ +++T +S G+GF+ S A+ ++ +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 175 DGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQG 231
+G+ + +T ++N+ + G +R +Q + P H I+ G+L +T
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKR----------FQ--TEGPDHTIFVGDLAPEVTDYM 169
Query: 232 LRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L D F+ G + AKV+ +R TGRS+G+GFV F + A+ MNG RP+R+
Sbjct: 170 LSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIG 229
Query: 291 -MANERAPPVLPAA-KETKTENSID 313
AN+ A P+ PA + T+ N+ D
Sbjct: 230 PAANKNALPMQPAMYQNTQGANAGD 254
Score = 164 (62.8 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 55/191 (28%), Positives = 90/191 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L++ F G+V A++V DR T RS+G+GFV E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFV---DSPHK--IYAGNLGWGL 227
+G R +++ P + A M P + + QG + P+ I+ G L +
Sbjct: 216 MNGQYCSTRPMRIG----PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 228 TSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
T L+ F GQ G LL K+ G+ GFV + + AL +NG ++ G+
Sbjct: 272 TDDELKSIF-GQFGELLHVKIP----PGKR--CGFVQYANKASAEHALSVLNGTQLGGQS 324
Query: 287 LRLNMANERAP 297
+RL+ R+P
Sbjct: 325 IRLSWG--RSP 333
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 237 (88.5 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 55/185 (29%), Positives = 95/185 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A L+VG L +++ + L F G V A ++ +R T +SRG+G+V S A++A+
Sbjct: 168 ATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQ 230
G +I GR + + ++ G A+ + G SP ++ GNL +
Sbjct: 228 EMQGKEIDGRPINL---DMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRD 284
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L + F ++S +V T + +GFG+V F + ++ ++AL+AMNG +EGRP RL+
Sbjct: 285 NLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Query: 291 MANER 295
+ R
Sbjct: 345 FSTPR 349
Score = 177 (67.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ P ++ G L W + L+ F+ G++ A+VI ER TG+SRG+G+V FE+ +
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 273 ALDAMNGVEVEGRPLRLNMA 292
AL+ M G E++GRP+ L+M+
Sbjct: 225 ALEEMQGKEIDGRPINLDMS 244
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 237 (88.5 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 55/185 (29%), Positives = 95/185 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A L+VG L +++ + L F G V A ++ +R T +SRG+G+V S A++A+
Sbjct: 168 ATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQ 230
G +I GR + + ++ G A+ + G SP ++ GNL +
Sbjct: 228 EMQGKEIDGRPINL---DMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRD 284
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L + F ++S +V T + +GFG+V F + ++ ++AL+AMNG +EGRP RL+
Sbjct: 285 NLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLD 344
Query: 291 MANER 295
+ R
Sbjct: 345 FSTPR 349
Score = 177 (67.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ P ++ G L W + L+ F+ G++ A+VI ER TG+SRG+G+V FE+ +
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 273 ALDAMNGVEVEGRPLRLNMA 292
AL+ M G E++GRP+ L+M+
Sbjct: 225 ALEEMQGKEIDGRPINLDMS 244
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 232 (86.7 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A++AI+
Sbjct: 168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 227
Query: 173 LFDGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
G +I GR + + P G A K ++ D+ ++ GNL +
Sbjct: 228 EMQGKEIDGRPINCDMSTSKPAGNNDRAK--KFGDTPSEPSDT---LFLGNLSFNADRDA 282
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
+ + F ++S ++ T + +GFG+V F ED + ALDA+ G ++ RP+RL+
Sbjct: 283 IFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342
Query: 292 ANER 295
++ R
Sbjct: 343 SSPR 346
Score = 172 (65.6 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ P I+ G L W + + L+ F+ G++ A+VI+ER T RSRG+G+V FE +
Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEK 224
Query: 273 ALDAMNGVEVEGRPLRLNMANER 295
A+ M G E++GRP+ +M+ +
Sbjct: 225 AIQEMQGKEIDGRPINCDMSTSK 247
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 236 (88.1 bits), Expect = 6.7e-19, P = 6.7e-19
Identities = 63/187 (33%), Positives = 95/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F+ G S +++ D T RSRGFGFV G+ EEA++A+
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + + R GE +++ N YQG +Y NL G+
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 60/181 (33%), Positives = 91/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E G K+ F + +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-LEYGAKVME----FTN----VYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + TGRSRGFGFV + E+ Q A+ MNG EV GR + + A +
Sbjct: 210 IFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 137 (53.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 42/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGM 161
Score = 114 (45.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F ++S +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAP 297
N ++GRP+R+ M ++R P
Sbjct: 73 NFEVIKGRPIRI-MWSQRDP 91
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 231 (86.4 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 64/182 (35%), Positives = 98/182 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G++ S+++VY+ SRGFGFV + E A++AI
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A +G + GF + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFK-SRQKREAELGARAL----GFTN----IYVKNLRVDMDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F S KV+ + G+SRGFGF+ FE E+ Q A+D MNG EV G+ L + A +
Sbjct: 210 LFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 295 RA 296
RA
Sbjct: 269 RA 270
Score = 204 (76.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 57/187 (30%), Positives = 92/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL M L ++F++ G S +++ D +SRGFGF+ EEA++A+
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAA----MGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + R E M + QN YQG +Y NL +
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGV-----NLYVKNLDDSIN 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
L++ F + SAKV+ E + S+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 147 (56.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 43/164 (26%), Positives = 76/164 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T + L E+F+ GT+ S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + G R+ MG I+ NL + ++ L D
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMG---------------NIFIKNLENSIDNKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
F +LS+KV++ + R GF F T E A+ + ++ M
Sbjct: 118 TFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGM 161
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 34/110 (30%), Positives = 55/110 (50%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIST 323
N ++G+P+R+ M + R P + + ENSID L + ST
Sbjct: 73 NFEMIKGQPIRI-MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFST 121
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 231 (86.4 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 62/187 (33%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A+
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR V V + + R GE +++ N YQG +Y NL G+
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
LR F + S KV+ E G S+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 204 (76.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 58/181 (32%), Positives = 91/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E G K+ F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-LEYGAKVME----FTN----VYIKNFGEDMDDKRLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG EV GR + + A +
Sbjct: 210 IFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 42/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + Y R GF F T E A ++ M
Sbjct: 116 YDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGM 161
Score = 114 (45.2 bits), Expect = 0.00096, P = 0.00096
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F ++S +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++GRP+R+ M ++R P + + ++SID L + S
Sbjct: 73 NFEVIKGRPIRI-MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS 120
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 225 (84.3 bits), Expect = 6.2e-18, P = 6.2e-18
Identities = 52/182 (28%), Positives = 91/182 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +++ L + F E GT+ A ++ D + RS+G+G+V + E AK A+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTSQGLR 233
+I GR V ++ PR + ++ + P ++ GNL + T L
Sbjct: 325 GTKEIDGRMVNLDLSN-PRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLS 383
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
AF G + S ++ + +GR +GFG+VTF + + ++ MNG + GRP RL+ +
Sbjct: 384 TAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFST 442
Query: 294 ER 295
R
Sbjct: 443 PR 444
Score = 150 (57.9 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 31/89 (34%), Positives = 54/89 (60%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ G L W + Q L F+ ++ A+VI + +GRS+G+G+V FET E ++A+ A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV-AA 323
Query: 278 NGV-EVEGRPLRLNMANERAPPVLPAAKE 305
NG E++GR + L+++N R P A++
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQ 352
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 228 (85.3 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 64/193 (33%), Positives = 101/193 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++ +LP S T+ SLAE F+++ + A +V D T +S+G+GFVT VE+AK A+
Sbjct: 39 LFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEEL 98
Query: 175 DGSQIGGRTVKVNFPEVPRG-------GERA----AMGPKLQNSYQGFVDSPHKIYAGNL 223
+GS G+ +KV + + PR G+ A+ K Q Q P K+ NL
Sbjct: 99 NGSTFEGKKIKVEYAQ-PRHRVVDETVGKSVPSAEALERKKQREQQKADTQPPKLIVRNL 157
Query: 224 GWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV 282
W + T + L F+ G + V + + GFGFV ++ + AL+A+NG EV
Sbjct: 158 PWSIKTPEDLAAHFRSF-GKVKY-VTLPKKGSQLAGFGFVVLRGKKNAEKALEAVNGKEV 215
Query: 283 EGRPLRLNMANER 295
+GR L ++ A E+
Sbjct: 216 DGRTLAVDWAVEK 228
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 187 NFPEVPRGGERAAM-GPKLQNSYQ--GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243
N PE P A +N+ Q G +++ +L T++ L + F +
Sbjct: 5 NSPEKPTEASGAITESSSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIK 64
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
A V+ + T +S+G+GFVTF ED ++AL+ +NG EG+ +++ A R
Sbjct: 65 HAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPR 116
Score = 100 (40.3 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+ +++ NLP++ SL + F + G + A IV D T+R RG GFV E A+ +
Sbjct: 308 ASTIFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCFWKPEHAQACV 367
Query: 172 R 172
+
Sbjct: 368 Q 368
Score = 69 (29.3 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G G+ Q + F+G+ G +KV + GRSRG+GF+ + T L +NG
Sbjct: 555 GVGVVRQA-KIVFEGRDG---SKVSEDSGAGRSRGYGFIEYYTHRHALMGLRWLNG 606
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 225 (84.3 bits), Expect = 7.4e-18, P = 7.4e-18
Identities = 61/189 (32%), Positives = 100/189 (52%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YV NL ++T L +F++ GTV+S ++ D + RSRGFGFV + E AK+A+
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAM 259
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ-GFVDSPH----KIYAGNLGWG 226
G Q+G + + V + + ER M L+ + F+ P+ +Y NL
Sbjct: 260 ESLCGLQLGSKKLFVG--KALKKDERREM---LKQKFSDNFIAKPNMRWSNLYVKNLSES 314
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
+ LR+ F ++SAKV+ GRS+GFGFV F E+ + A +NG V+G+P
Sbjct: 315 MNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKP 373
Query: 287 LRLNMANER 295
+ + +A +
Sbjct: 374 IVVRVAERK 382
Score = 195 (73.7 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 60/180 (33%), Positives = 92/180 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV NL S+TSS L +F G++ S ++V + +S+GFGFV + + A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARS 169
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
GS + G+ K+ + ERAAM G DS + +Y NL +T L
Sbjct: 170 ALHGSMVYGK--KLFVAKFINKDERAAMA--------GNQDSTN-VYVKNLIETVTDDCL 218
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
F Q G +S+ V+ GRSRGFGFV F E+ + A++++ G+++ + L + A
Sbjct: 219 HTLFS-QYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 49/173 (28%), Positives = 81/173 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T L + F+ V S + + VT +S + ++ S A A+
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G+ +++ + + R + GF + +Y NL +TS L
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRR--------RTRTGFAN----LYVKNLDSSITSSCLER 130
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
F +LS KV+ E G+S+GFGFV F+T + SA A++G V G+ L
Sbjct: 131 MFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKL 181
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 219 (82.2 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 58/208 (27%), Positives = 108/208 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 120
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 179
Query: 295 RAPPVLPAAKETKTENSIDGSELLSSIS 322
R PP + E+ T+ + E++S S
Sbjct: 180 RKPPAPKSTYESNTKQ-LSYDEVVSQSS 206
Score = 196 (74.1 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 51/198 (25%), Positives = 94/198 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V SP +Y G + GLT
Sbjct: 164 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 223
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ F+ F + E A+ ++NG +EG ++
Sbjct: 224 QLMRQTFSPFGQIMEIRVFPDK------GYSFIRFSSHESAAHAIVSVNGTTIEGHVVKC 277
Query: 290 NMANERAPPVLPAAKETK 307
E + P ++ +
Sbjct: 278 YWGKETLDMINPVQQQNQ 295
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 219 (82.2 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 58/208 (27%), Positives = 108/208 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 183
Query: 295 RAPPVLPAAKETKTENSIDGSELLSSIS 322
R PP + E+ T+ + E++S S
Sbjct: 184 RKPPAPKSTYESNTKQ-LSYDEVVSQSS 210
Score = 200 (75.5 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 52/198 (26%), Positives = 95/198 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V SP+ +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ FV F + E A+ ++NG +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFSSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 290 NMANERAPPVLPAAKETK 307
E + P ++ +
Sbjct: 282 YWGKETLDMINPVQQQNQ 299
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 61/187 (32%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A+
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + + R E +++ N YQG +Y NL G+
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 208 (78.3 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 59/181 (32%), Positives = 91/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E G K+ F + +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-LEYGAKVME----FTN----VYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG EV GR + + A +
Sbjct: 210 IFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 132 (51.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 40/166 (24%), Positives = 73/166 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS + ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGM 161
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 216 (81.1 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 60/183 (32%), Positives = 100/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ + +L + + G + S +V D + S+G+GFV + E A+ AI+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + GR V V F R A +G + + + P+ +Y N G + + L+
Sbjct: 159 NGMLLNGRKVFVGQFKS--RKEREAELGARAK-------EFPN-VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 168 (64.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/158 (29%), Positives = 80/158 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGE-RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G ++ G+ + V + V R E + Q+ + +Y NL G+ +
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRY--QVVNLYVKNLDDGIDDER 309
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
LR AF + SAKV+ E GRS+GFGFV F + E+
Sbjct: 310 LRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEE 345
Score = 129 (50.5 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 46/173 (26%), Positives = 76/173 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S I D +T S + +V ++A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDKSINNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM--NGVEV 282
D +LS V+ + + GF F T E AE ++ M NG +V
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 217 (81.4 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 12 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 70
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 71 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 125
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 126 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 172
Score = 147 (56.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 154 LNGFELAGRPMKV 166
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 216 (81.1 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 55/195 (28%), Positives = 102/195 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 183
Query: 295 RAPPVLPAAKETKTE 309
R PP + E+ T+
Sbjct: 184 RKPPAPKSTYESNTK 198
Score = 196 (74.1 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 52/192 (27%), Positives = 92/192 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ FV F + E A+ ++NG +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 290 NMANERAPPVLP 301
E + P
Sbjct: 282 YWGKETLDMINP 293
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 212 (79.7 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 172 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 225
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 226 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 285
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 286 TPPMPLLTPA 295
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 216 (81.1 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 55/195 (28%), Positives = 102/195 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 183
Query: 295 RAPPVLPAAKETKTE 309
R PP + E+ T+
Sbjct: 184 RKPPAPKSTYESNTK 198
Score = 199 (75.1 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 52/198 (26%), Positives = 95/198 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ FV F + E A+ ++NG +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 290 NMANERAPPVLPAAKETK 307
E + P ++ +
Sbjct: 282 YWGKETLDMINPVQQQNQ 299
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 221 (82.9 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 60/183 (32%), Positives = 92/183 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M + L E+F+ G S +++ D T RS+GFGFV EEA++A+
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G +I GR V V + R ++ + K + Q V +Y NL G+ + L
Sbjct: 252 NGKEINGRMVYVGRAQ-KRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
R F + SAKV+ E G S+GFGFV F + E+ A+ MNG V +PL + +A
Sbjct: 311 RKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 293 NER 295
+
Sbjct: 369 QRK 371
Score = 207 (77.9 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 59/181 (32%), Positives = 91/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + SRG GFV + E A AI+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A G + F + +Y N G + LR+
Sbjct: 159 NGMLLNDRKVFVGHFK-SRKEREAEFGARAME----FTN----VYIKNFGDDMDDNRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +TGRS+GFGFV FE E+ Q A+ MNG E+ GR + + A +
Sbjct: 210 IFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 42/166 (25%), Positives = 73/166 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D + RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + R GF F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGM 161
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 217 (81.4 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 215 (80.7 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 55/195 (28%), Positives = 102/195 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 183
Query: 295 RAPPVLPAAKETKTE 309
R PP + E+ T+
Sbjct: 184 RKPPAPKSTYESNTK 198
Score = 199 (75.1 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 52/198 (26%), Positives = 95/198 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ FV F + E A+ ++NG +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 290 NMANERAPPVLPAAKETK 307
E + P ++ +
Sbjct: 282 YWGKETLDMINPVQQQNQ 299
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 212 (79.7 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 128 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 187
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 188 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 241
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 242 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 301
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 302 TPPMPLLTPA 311
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 215 (80.7 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 55/195 (28%), Positives = 102/195 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 183
Query: 295 RAPPVLPAAKETKTE 309
R PP + E+ T+
Sbjct: 184 RKPPAPKSTYESNTK 198
Score = 199 (75.1 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 52/198 (26%), Positives = 95/198 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ FV F + E A+ ++NG +EG ++
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281
Query: 290 NMANERAPPVLPAAKETK 307
E + P ++ +
Sbjct: 282 YWGKETLDMINPVQQQNQ 299
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 220 (82.5 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 59/182 (32%), Positives = 99/182 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ S +L + F+ G + S ++V D + S+G+GFV + EEA+ AI
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R +A +G + + F + +Y NLG + + L+
Sbjct: 159 NGMFLNDRKVFVGRFKS--RRDRQAELGARAKE----FTN----VYIKNLGEDMDDERLQ 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
D F LS KV+ + +G+S+GFGFV+FE ED + A+D MNG ++ G+ + + A
Sbjct: 209 DLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 191 (72.3 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 59/192 (30%), Positives = 95/192 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL M L ++F+ G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGE-RAAMG------PKLQNSYQG-FVDSPH-KIYAGNL 223
+G + G+ + V + V R E + G PK++ Q V +Y NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNL 311
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283
G+ + LR F + SAKV E GRS+GFGFV F + E+ A+ MNG V
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 369
Query: 284 GRPLRLNMANER 295
+PL + +A +
Sbjct: 370 TKPLYVALAQRK 381
Score = 149 (57.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 49/166 (29%), Positives = 76/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + DR T RS G+ V +E+A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + S+ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDRSIDSKTL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGM 161
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 34/109 (31%), Positives = 55/109 (50%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V +R T RS G+ V F+ ED + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFS 120
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 54/193 (27%), Positives = 100/193 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 183
Query: 295 RAPPVLPAAKETK 307
R PP + E +
Sbjct: 184 RKPPAPKSTYECR 196
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 220 (82.5 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 54/181 (29%), Positives = 97/181 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL Y+ + +L E+F +A ++ + R +G+ FV + E+AKEA+
Sbjct: 461 LIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSC 516
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ ++I GR +++ F P ++ M N+ GF ++ L T + LR+
Sbjct: 517 NNTEIEGRAIRLEFSS-P-SWQKGNM-----NARGGFNQQSKTLFVRGLSEDTTEETLRE 569
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
+F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A
Sbjct: 570 SFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKP 626
Query: 295 R 295
+
Sbjct: 627 K 627
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 220 (82.5 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 54/181 (29%), Positives = 97/181 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL Y+ + +L E+F +A ++ + R +G+ FV + E+AKEA+
Sbjct: 463 LIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSC 518
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ ++I GR +++ F P ++ M N+ GF ++ L T + LR+
Sbjct: 519 NNTEIEGRAIRLEFSS-P-SWQKGNM-----NARGGFNQQSKTLFVRGLSEDTTEETLRE 571
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
+F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A
Sbjct: 572 SFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKP 628
Query: 295 R 295
+
Sbjct: 629 K 629
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 220 (82.5 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 54/181 (29%), Positives = 97/181 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL Y+ + +L E+F +A ++ + R +G+ FV + E+AKEA+
Sbjct: 463 LIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSC 518
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ ++I GR +++ F P ++ M N+ GF ++ L T + LR+
Sbjct: 519 NNTEIEGRAIRLEFSS-P-SWQKGNM-----NARGGFNQQSKTLFVRGLSEDTTEETLRE 571
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
+F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A
Sbjct: 572 SFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKP 628
Query: 295 R 295
+
Sbjct: 629 K 629
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 217 (81.4 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 217 (81.4 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 217 (81.4 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 217 (81.4 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 217 (81.4 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 217 (81.4 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 217 (81.4 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 217 (81.4 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++ ER
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 212 (79.7 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 147 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 200
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 201 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 260
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 261 TPPMPLLTPA 270
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 218 (81.8 bits), Expect = 6.1e-17, P = 6.1e-17
Identities = 57/184 (30%), Positives = 93/184 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N +L ++FA+ G + S E++ V +S+GFGFV + EEA+ A++
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK---IYAGNLGWGLTSQG 231
S I G +K++ + ER A K ++ ++ +Y NL + G
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L+ F+ + SAKV+ + GRS+GFGFV FE E+ SA+ MN V +PL + +
Sbjct: 333 LKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 391
Query: 292 ANER 295
A +
Sbjct: 392 AQRK 395
Score = 166 (63.5 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 51/184 (27%), Positives = 87/184 (47%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L + S L E F+ AG V S + D T S G+ +V +A+ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P ++ S G I+ NL + ++ +
Sbjct: 92 TMNFEALHGKPMRIMWSQ---------RDPAMRRSGAG------NIFIKNLDKVIDNKSI 136
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F +LS KV + G S+G+GFV FET E Q+A+ +NG+ + G+ + +
Sbjct: 137 YDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 293 NERA 296
RA
Sbjct: 196 QPRA 199
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 218 (81.8 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 61/208 (29%), Positives = 105/208 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NL S+ + +L E F+ GT+ S ++ D + +SRG+GFV + + AK AI
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + + V P + R ER + K++ F + +Y NL T L+
Sbjct: 195 NGKVLNDKQIFVG-PFL-RKEERESAADKMK-----FTN----VYVKNLSEATTDDELKT 243
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F GQ G +S+ V+ G+SR FGFV FE ED A++A+NG + + + + A +
Sbjct: 244 TF-GQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQK 302
Query: 295 RAPPVLPAAKETKTENSIDGSELLSSIS 322
++ L ++ + + S DG ++
Sbjct: 303 KSERELELSRRYE-QGSSDGGNKFDGLN 329
Score = 203 (76.5 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 45/165 (27%), Positives = 89/165 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F E V S + D T+ S G+G+V + ++A++A++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G+ +++ + R+ +G ++ NL + ++ L +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTLHE 152
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF G ++S KV + + G+SRG+GFV F+T + ++A++ +NG
Sbjct: 153 AFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Score = 187 (70.9 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 57/187 (30%), Positives = 91/187 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + T L F + G+++SA ++ D +SR FGFV + E+A A+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
+G + + V + + ER +L Y QG D +K +Y NL +T
Sbjct: 286 NGKKFDDKEWYVG--KAQKKSEREL---ELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVT 340
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR+ F + S KV+ + +G S+G GFV F A + L+ MNG V G+PL
Sbjct: 341 DEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLY 399
Query: 289 LNMANER 295
+ +A +
Sbjct: 400 VALAQRK 406
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 41/96 (42%), Positives = 63/96 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A++L++G L + T L+E F++ G V A+IV DRV+DRS+GFGFVT S +EA++A+
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 172 RLFDGSQIGGRTVKVNFPEVPR-----GGERAAMGP 202
F+G Q+ GRT+ V++ + + GG A GP
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGP 128
Score = 151 (58.2 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T QGL +AF ++ A+++ +R + RS+GFGFVTF +A++ Q AL
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 277 MNGVEVEGRPLRLNMANER 295
NG ++ GR + ++ A +
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 212 (79.7 bits), Expect = 8.9e-17, P = 8.9e-17
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 82 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 135
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 136 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 195
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 196 TPPMPLLTPA 205
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 216 (81.1 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 60/183 (32%), Positives = 100/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ + +L + + G + S +V D + S+G+GFV + E A+ AI+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + GR V V F R A +G + + + P+ +Y N G + + L+
Sbjct: 159 NGMLLNGRKVFVGQFKS--RKEREAELGARAK-------EFPN-VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 199 (75.1 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 55/184 (29%), Positives = 93/184 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGE-RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G ++ G+ + V + V R E + Q+ + +Y NL G+ +
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRY--QVVNLYVKNLDDGIDDER 309
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
LR AF + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL + +
Sbjct: 310 LRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 292 ANER 295
A +
Sbjct: 368 AQRK 371
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 46/173 (26%), Positives = 76/173 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S I D +T S + +V ++A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDKSINNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM--NGVEV 282
D +LS V+ + + GF F T E AE ++ M NG +V
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 52/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + F+ G V I+ DR + RS+G +V ++ AI L G ++ G + V
Sbjct: 12 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQA 70
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + + ++
Sbjct: 71 SQAEKN-RLAAMANNLQKGNGG----PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM 125
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+R+ ER
Sbjct: 126 KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 172
Score = 130 (50.8 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + + ++ D T RS+G+GF+T E A+ A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 153
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR ++V
Sbjct: 154 LNGFELAGRPMRV 166
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 207 (77.9 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 63/181 (34%), Positives = 92/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++ D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLPVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F +LS KV+ + +G SR FGFV FE E+ Q A+ MNG EV GR L A +
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 132 (51.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 41/166 (24%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV + + R GF F T E A+ + ++ M
Sbjct: 116 YDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGM 161
Score = 119 (46.9 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIST 323
N ++G+P+R+ M ++R P + + E+SID L + ST
Sbjct: 73 NFEMLKGQPIRI-MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 211 (79.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 54/186 (29%), Positives = 94/186 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++G+L M S L F++AG V S +I+ ++ T +S +GFV + A++ ++ +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 175 DGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G+ + + ++N+ G +RA G S I+ G+L +T L
Sbjct: 146 NGTMMPNTEQPFRLNWAGFSTGEKRAETG------------SDFSIFVGDLASDVTDTML 193
Query: 233 RDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
RD F + P L AKV+ + TG S+G+GFV F + A+ MNGV R +R+ +
Sbjct: 194 RDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGV 253
Query: 292 ANERAP 297
A + P
Sbjct: 254 ATPKKP 259
Score = 143 (55.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 52/211 (24%), Positives = 93/211 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T + L + FA ++ A++V D T S+G+GFV G E A+
Sbjct: 179 IFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTE 238
Query: 174 FDGSQIGGRTVKVNF--PEVPRGGER-AAMGPKLQNSY----------QGFVDSPHK-IY 219
+G R +++ P+ P E+ ++ L Y Q DS + I+
Sbjct: 239 MNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIF 298
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G L +T + LR +F ++S K+ +G GFV F Q A+ ++G
Sbjct: 299 VGGLDSEVTDEELRQSFNQFGEVVSVKI------PAGKGCGFVQFSDRSSAQEAIQKLSG 352
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTEN 310
+ + +RL+ PA K+ +T++
Sbjct: 353 AIIGKQAVRLSWGRS------PANKQMRTDS 377
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 214 (80.4 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 65/181 (35%), Positives = 94/181 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A+ AIR
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQNAIRTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + + L+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLHVDVDERCLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F +LS KV+ + +G SRGFGFV FE ED Q A+ MNG EV GR L + A +
Sbjct: 210 LFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 197 (74.4 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 65/217 (29%), Positives = 105/217 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + L ++F++ G + S +++ D + SRGFGFV E+A++A+
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + V R E +++ YQG +Y NL +
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 289 LNMAN--ERAPPVLPAA--KETKTENSIDGSELLSSI 321
+ +A E +L + T ++ GS LL S+
Sbjct: 365 VALAQRKEERKAILTNQYIQRLSTMRAL-GSPLLGSL 400
Score = 132 (51.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 41/166 (24%), Positives = 76/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NVFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A++ ++ M
Sbjct: 116 YDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGM 161
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIST 323
N ++G+P+R+ M ++R P + + E+SID L + ST
Sbjct: 73 NFEVIKGQPIRI-MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFST 121
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 212 (79.7 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 153 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 206
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 207 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 266
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 267 TPPMPLLTPA 276
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 213 (80.0 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 113
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 114 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 163
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 164 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 221
Query: 293 NER 295
++
Sbjct: 222 QKK 224
Score = 200 (75.5 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 261
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 262 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 319
Query: 289 LNMANER 295
+ +A +
Sbjct: 320 VALAQRK 326
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 213 (80.0 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 166 (63.5 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 50/172 (29%), Positives = 83/172 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ LR F + SAKV+ E GRS+GFGFV F + + S N V
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSYMQRMASVRAVPNPV 356
Score = 141 (54.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00053, P = 0.00053
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 212 (79.7 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 161 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 214
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 215 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 274
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 275 TPPMPLLTPA 284
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 212 (79.7 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 161 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 214
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 215 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 274
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 275 TPPMPLLTPA 284
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 210 (79.0 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 55/185 (29%), Positives = 95/185 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VG+L + M + L F+ G V+S +++ +++T +S G+GFV S A+E ++ +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 175 DGSQI--GGRTVKVNFPEVPRGGERAAM-GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
GS + + ++N+ G +RA GP L ++ G+L +T
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLS------------VFVGDLSPDVTDVL 217
Query: 232 LRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L + F + P + SAKV+ + TGRS+G+GFV F + AL MNG R +R+
Sbjct: 218 LHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG 277
Query: 291 MANER 295
+A +
Sbjct: 278 IATPK 282
Score = 138 (53.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 53/199 (26%), Positives = 94/199 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F++ +V SA++V D T RS+G+GFV G E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG-L 232
+G+ R ++V R A+ + Q+S Q + + G++G+G S G
Sbjct: 264 MNGAYCSNRQMRVGIATPKR-----AIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES 318
Query: 233 RDA--FQG--QPGLLSAKVI--FERYTGR--------SRGFGFVTFETAEDLQSALDAMN 278
+A F G P ++ + F ++ G +G GFV F + + A++++N
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQF-GEVVSVKIPVGKGCGFVQFADRKSAEDAIESLN 377
Query: 279 GVEVEGRPLRLNMANERAP 297
G + +RL+ R+P
Sbjct: 378 GTVIGKNTVRLSWG--RSP 394
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 212 (79.7 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 174 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 227
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 228 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 287
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 288 TPPMPLLTPA 297
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 212 (79.7 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 56/198 (28%), Positives = 97/198 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V L + + L F + G V A+IV DRV+ RS+G G+V AI+L
Sbjct: 176 IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQL- 234
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQGLR 233
G ++ G + E + R A + + + +P H++Y GN+ + + L+
Sbjct: 235 TGQKLLGIPIIAQLTEAEKN--RQARNSEASSGNKH--SAPFHRLYVGNIHFSIDENDLQ 290
Query: 234 DAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
F+ P G L + + TGRSRG+GFV F + AL+ MNG ++ GR +R+ +
Sbjct: 291 SVFE--PFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLG 348
Query: 293 NERAPPVLPAAKETKTEN 310
N++ P ++++ N
Sbjct: 349 NDKFTPENTQRTQSQSAN 366
Score = 150 (57.9 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 38/121 (31%), Positives = 63/121 (52%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+ +S+ + L VF G + ++ D T RSRG+GFV +A+EA+
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEK 332
Query: 174 FDGSQIGGRTVKV---NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+G +GGR ++V N P +R Q+++QG +++G+ G G+ +
Sbjct: 333 MNGYDLGGRAIRVGLGNDKFTPENTQRTQSQSANQSNFQG------SMFSGSGGRGVQAG 386
Query: 231 G 231
G
Sbjct: 387 G 387
Score = 36 (17.7 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 256 SRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
S+G ++ F+ + ++A+ +NG GR +
Sbjct: 501 SQGDIYLKFDRVQGGENAIKGLNGRFFGGRQI 532
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 212 (79.7 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 190 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 243
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 244 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 303
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 304 TPPMPLLTPA 313
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 213 (80.0 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 200 (75.5 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 141 (54.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 213 (80.0 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 200 (75.5 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 141 (54.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 213 (80.0 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 200 (75.5 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 141 (54.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 213 (80.0 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 200 (75.5 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 141 (54.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 213 (80.0 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 200 (75.5 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 46/166 (27%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 114 (45.2 bits), Expect = 0.00097, P = 0.00097
Identities = 32/109 (29%), Positives = 53/109 (48%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 212 (79.7 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 191 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 244
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 245 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 304
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 305 TPPMPLLTPA 314
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 212 (79.7 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 195 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 248
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 249 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 308
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 309 TPPMPLLTPA 318
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 212 (79.7 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 195 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 248
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 249 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 308
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 309 TPPMPLLTPA 318
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 213 (80.0 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 63/181 (34%), Positives = 94/181 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQQAITTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-VELGARAME----FTN----IYVKNLHVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F +LS KV+ + +G SRGFGFV F+ E+ Q A+ MNG EV GR L + A +
Sbjct: 210 LFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 58/187 (31%), Positives = 92/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + L ++F+ G + S +++ D + SRGFGFV EEA++A+
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG + +PL
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 134 (52.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 42/166 (25%), Positives = 76/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A+ + ++ M
Sbjct: 116 YDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNGM 161
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIST 323
N ++G+P+R+ M ++R P + + E+SID L + ST
Sbjct: 73 NFEVIKGQPIRI-MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 213 (80.0 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 200 (75.5 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 141 (54.7 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00059, P = 0.00059
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 51/148 (34%), Positives = 75/148 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L Y T SL E F++ GT+A +++ DR TDRSRGFGFVT + E+AK+A+
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 174 FDGSQIGGRTVKVNFPEVPR-GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G Q+ GR ++V+ E + GG + +GF G G G S G
Sbjct: 84 MNGKQVDGRMIRVD--EAGKSGGRSGGFRGGSRGGGRGFFRGSRGRGGGGYG-GDRSYGS 140
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFG 260
+F G + Y G RG+G
Sbjct: 141 DRSFGGDRSYGGDR----SYGGGDRGYG 164
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 205 QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
+NS + K++ G L + T Q L +AF + VI +R T RSRGFGFVTF
Sbjct: 12 RNSEVIIMSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTF 71
Query: 265 ETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
E ED + A+ AMNG +V+GR +R++ A +
Sbjct: 72 ENPEDAKDAMAAMNGKQVDGRMIRVDEAGK 101
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 211 (79.3 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 52/167 (31%), Positives = 85/167 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V I+ DR + RS+G ++ AI L G ++ G + V
Sbjct: 165 LEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGL-SGQRLLGVPIIVQA 223
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AA+ LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 224 SQAEKN-RAAALANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLM 278
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF AE + AL+ +NG E+ GRP+++ ER
Sbjct: 279 MDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTER 325
Score = 148 (57.2 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 306
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 307 LNGFELAGRPMKV 319
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 210 (79.0 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 57/182 (31%), Positives = 93/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
LYVGNLP S + ++ E+F+ G V + +I+ D+ + F+ + E A A+
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDK-NKAGFNYAFIEYDTNEVADMALNT 139
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + +KVN+ + AA+ N+ + + I+ G+L + +GLR
Sbjct: 140 LNGRLVDDVEIKVNW-----AFQSAAIAGNPNNTEEPLFN----IFVGDLSPEVNDEGLR 190
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+AF L A V+++ T RSRG+GFVTF D + AL MNG + GR +R N A+
Sbjct: 191 NAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWAS 250
Query: 294 ER 295
+
Sbjct: 251 HK 252
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 208 (78.3 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 52/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + F+ G V I+ DR + RS+G +V ++ AI L G ++ G + V
Sbjct: 183 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQA 241
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + + ++
Sbjct: 242 SQAEKN-RLAAMANNLQKGSSG----PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM 296
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+R+ ER
Sbjct: 297 KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 343
Score = 130 (50.8 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + + ++ D T RS+G+GF+T E A+ A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 324
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR ++V
Sbjct: 325 LNGFELAGRPMRV 337
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 211 (79.3 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 57/183 (31%), Positives = 93/183 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D T +SRGFGFV+ E+A +A+
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G+++ G+TV V + + +A + K + Q + +Y NL + + L
Sbjct: 253 NGTELNGKTVFVGRAQ-KKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 311
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
R F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL + +A
Sbjct: 312 RKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 369
Query: 293 NER 295
+
Sbjct: 370 QRK 372
Score = 200 (75.5 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 56/182 (30%), Positives = 93/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 159
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A MG K + F + +Y N G + Q L+
Sbjct: 160 NGMLLNDRKVFVGRFKS--RKEREAEMGAKAKE----FTN----VYIKNFGDDMDDQRLK 209
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + TG+SRGFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 210 ELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQ 268
Query: 294 ER 295
++
Sbjct: 269 KK 270
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 41/166 (24%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 72 TMNFDVVKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 116
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T + A+ ++ M
Sbjct: 117 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGM 162
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N V+G+P+R+ M ++R P + + + SID L + S
Sbjct: 74 NFDVVKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 121
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 207 (77.9 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 52/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + F+ G V I+ DR + RS+G +V ++ AI L G ++ G + V
Sbjct: 173 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQA 231
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + + ++
Sbjct: 232 SQAEKN-RLAAMANNLQKGTGG----PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM 286
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+R+ ER
Sbjct: 287 KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRIGHVTER 333
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + + ++ D T RS+G+GF+T E A+ A+
Sbjct: 255 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 314
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +++
Sbjct: 315 LNGFELAGRPMRI 327
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 58/169 (34%), Positives = 92/169 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ + +L + + G + S +V D + S+G+GFV + E A+ AI+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + GR V V F R A +G + + + P+ +Y N G + + L+
Sbjct: 159 NGMLLNGRKVFVGQFKS--RKEREAELGARAK-------EFPN-VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVE 281
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Score = 129 (50.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 46/173 (26%), Positives = 76/173 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S I D +T S + +V ++A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDKSINNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM--NGVEV 282
D +LS V+ + + GF F T E AE ++ M NG +V
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 209 (78.6 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 58/183 (31%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 94
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 95 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 144
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 145 ELF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 202
Query: 293 NER 295
++
Sbjct: 203 QKK 205
Score = 203 (76.5 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 57/187 (30%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 242
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 243 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 300
Query: 289 LNMANER 295
+ +A +
Sbjct: 301 VALAQRK 307
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 58/208 (27%), Positives = 104/208 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKA 109
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 110 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 168
Query: 295 RAPPVLPAAKETKTENSIDGSELLSSIS 322
R PP + E+ T+ + E++S S
Sbjct: 169 RKPPAPKSTYESNTKQ-LSYDEVVSQSS 195
Score = 154 (59.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 39/127 (30%), Positives = 64/127 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V SP +Y G + GLT
Sbjct: 153 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 212
Query: 230 QGLRDAF 236
Q +R F
Sbjct: 213 QLMRQTF 219
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 139
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 140 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 197
Query: 289 LNMANER 295
+ +A +
Sbjct: 198 VALAQRK 204
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 51/177 (28%), Positives = 93/177 (52%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RL N+P++ T + +F + G+V E+ + +R+RG F+ M S EEA A++
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHK-KERNRGLVFIEMASPEEAATALKS 153
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ + GR +KV++ + + + P+ S V + ++ NL + ++ L+
Sbjct: 154 LESCEYEGRRLKVDYAKTKK---KKTYAPRETPSP---VPT-FNLFVANLAFEARAKHLK 206
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
+ F G ++S +VIF RS G+GFV+F+T + ++AL G + GRP+RL
Sbjct: 207 EFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRL 263
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 206 (77.6 bits), Expect = 4.8e-16, P = 4.8e-16
Identities = 49/184 (26%), Positives = 96/184 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L Y + + L F++ G + S +++ +++T + G+GF+ S A+ ++ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 175 DGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G+Q+ G T ++N+ G++ GP H I+ G+L +T L
Sbjct: 86 NGTQMPGTELTFRLNWASFG-SGQKVDAGPD------------HSIFVGDLAPDVTDYLL 132
Query: 233 RDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
++ F+ + AKV+ + TGRS+G+GFV F + A+ MNG+ RP+R++
Sbjct: 133 QETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISA 192
Query: 292 ANER 295
A +
Sbjct: 193 ATPK 196
Score = 123 (48.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 50/194 (25%), Positives = 88/194 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 174 FDGSQIGGRTVKVNF--PEVPRGGERA----AMGPKLQNS-----YQGFVDSPHK----- 217
+G R ++++ P+ G ++ A+ P S Q +V P
Sbjct: 178 MNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCT 237
Query: 218 -IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
I NL +T + L+ AF Q G +VI+ + ++G+G+V F+T + A+
Sbjct: 238 TISVANLDQNVTEEELKKAFS-QLG----EVIYVKIPA-TKGYGYVQFKTRPSAEEAVQR 291
Query: 277 MNGVEVEGRPLRLN 290
M G + + +R++
Sbjct: 292 MQGQVIGQQAVRIS 305
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 208 (78.3 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 51/190 (26%), Positives = 98/190 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 153
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 154 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHPDLSDDDIK 207
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + + TG+ +G+GF+ ++ A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 208 SVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKAV 267
Query: 294 ERAPPVL-PA 302
P+L PA
Sbjct: 268 TPPMPLLTPA 277
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 206 (77.6 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 52/167 (31%), Positives = 86/167 (51%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + F+ G V I+ DR + RS+G +V ++ AI L G ++ G + V
Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQA 240
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + + ++
Sbjct: 241 SQAEKN-RLAAMANNLQKGNGG----PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM 295
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+R+ ER
Sbjct: 296 KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342
Score = 130 (50.8 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + + ++ D T RS+G+GF+T E A+ A+
Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR ++V
Sbjct: 324 LNGFELAGRPMRV 336
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 205 (77.2 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 53/183 (28%), Positives = 93/183 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L Y M + L FA G + SA+++ ++ T + G+GF+ S A+ ++ F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 175 DGSQIGG---RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQ 230
+ + I + ++N+ + G +R DSP + I+ G+L +T
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRD--------------DSPDYTIFVGDLAADVTDY 169
Query: 231 GLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
L + F+ P + AKV+ +R TGR++G+GFV F + A+ MNGV RP+R+
Sbjct: 170 ILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
Query: 290 NMA 292
A
Sbjct: 230 GPA 232
Score = 154 (59.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 52/190 (27%), Positives = 89/190 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DRVT R++G+GFV E A+
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFV--DSPHK--IYAGNLGWGL 227
+G R +++ P ++ G + Q+S G + P+ ++ G L +
Sbjct: 217 MNGVPCSTRPMRIG----PAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASV 272
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
T L++ F Q G +++ + R GFV F + AL +NGV++ G +
Sbjct: 273 TDDHLKNVFS-QYG----EIVHVKIPAGKR-CGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 288 RLNMANERAP 297
RL+ R+P
Sbjct: 327 RLSWG--RSP 334
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 205 (77.2 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 54/188 (28%), Positives = 95/188 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L Y M + L+ F G + SA+++ ++ T +S G+GF+ S A+ ++ +
Sbjct: 86 LWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTY 145
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G+ + V+ NF G + +S + H I+ G+L +T L++
Sbjct: 146 NGTLMPN--VEQNFR---MNWASLGAGERRDDSAE------HTIFVGDLAADVTDYILQE 194
Query: 235 AFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + AKV+ +R TGRS+G+GFV F + A+ MNGV RP+R+ A
Sbjct: 195 TFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAA 254
Query: 294 ERAPPVLP 301
+ P P
Sbjct: 255 NKKPVGTP 262
Score = 162 (62.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 52/187 (27%), Positives = 86/187 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V DR+T RS+G+GFV E A+
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 237
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN--SYQGFVDSPHK-IYAGNLGWGLTSQ 230
+G R +++ P + QN + QG D + I+ G L + +
Sbjct: 238 MNGVLCSTRPMRIG-PAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEE 296
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
LR F L+ K++ G+ GFV F T + AL ++NG ++ G+ +RL+
Sbjct: 297 HLRQVFSPYGELVHVKIV----AGKR--CGFVQFGTRASAEQALSSLNGTQLGGQSIRLS 350
Query: 291 MANERAP 297
R+P
Sbjct: 351 WG--RSP 355
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 209 (78.6 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 56/183 (30%), Positives = 91/183 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S ++ D + +S+GFGFV+ E+A+ A+
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G ++ G+ V V + +G + + K + Q + +Y NL GL + L
Sbjct: 252 NGKEMNGKQVYVGRAQ-KKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERL 310
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
R F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL + +A
Sbjct: 311 RKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 293 NER 295
+
Sbjct: 369 QRK 371
Score = 202 (76.2 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 56/182 (30%), Positives = 96/182 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A MG + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAEMGARAKE----FTN----VYIKNFGEDMDDEKLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS +V+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 EIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 144 (55.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 47/166 (28%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGRPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGM 161
Score = 119 (46.9 bits), Expect = 0.00026, P = 0.00026
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++GRP+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGRPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 209 (78.6 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 58/183 (31%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 ELF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 203 (76.5 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 57/187 (30%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 141 (54.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 209 (78.6 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 58/183 (31%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 ELF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 203 (76.5 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 57/187 (30%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 141 (54.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 202 (76.2 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 51/190 (26%), Positives = 96/190 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +++ + FA G ++ A +V D T +S+G+GF++ + +A+ AI+
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
+G +GGR ++ N+ P P+ A L SY+ ++ SP +Y G + G
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHL--SYEEVLNQSSPSNCTVYCGGIASG 216
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
L+ Q +R F ++ +V E+ G+ FV F++ E A+ ++NG +EG
Sbjct: 217 LSDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFDSHEGAAHAIVSVNGTCIEGHT 270
Query: 287 LRLNMANERA 296
++ E A
Sbjct: 271 VKCYWGKETA 280
Score = 197 (74.4 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 58/208 (27%), Positives = 101/208 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + +VF++ G S +++ D T + + FV A A+
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAAALAAM 68
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ +KVN+ P ++ N + FV G+L +++ +R
Sbjct: 69 NGRKILGKDMKVNWASTPSSQKKDT-----SNHFHVFV--------GDLSPEISTDDVRA 115
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GF++F D +SA+ MNG + GR +R N A
Sbjct: 116 AFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWAT- 174
Query: 295 RAPPVLPAAKETKTENSIDGSELLSSIS 322
R P + E + + E+L+ S
Sbjct: 175 RKPSAPKSNNEGASSKHLSYEEVLNQSS 202
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 54/152 (35%), Positives = 75/152 (49%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++++VG + YS L E F++ G V A+I+ DR T RSRGF FVT S EEA A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 172 RLFDGSQIGGRTVKVNFPEVPRG---GERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+L DG + GR ++VN+ RG G R GP Y G D + AG G G
Sbjct: 93 QL-DGQDLHGRRIRVNYA-TERGSGFGGRGFGGPG--GGY-GASDGGYGAPAGGYGGGAG 147
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
G ++ G G Y G + G+G
Sbjct: 148 GYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYG 179
Score = 169 (64.5 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
S KI+ G + + GLR+AF ++ AK+I +R TGRSRGF FVTF + E+ +A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 274 LDAMNGVEVEGRPLRLNMANER 295
+ ++G ++ GR +R+N A ER
Sbjct: 92 MQ-LDGQDLHGRRIRVNYATER 112
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 208 (78.3 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 56/182 (30%), Positives = 94/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDDKLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
D F +S +V+ + G+SRGFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 209 DIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 200 (75.5 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 56/187 (29%), Positives = 92/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F++ G S ++ D +SRGFGFV+ E+A+ A+
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ + GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 147 (56.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 47/166 (28%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGRPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 123 (48.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++GRP+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGRPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 203 (76.5 bits), Expect = 7.5e-16, P = 7.5e-16
Identities = 60/200 (30%), Positives = 99/200 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F + G S +++ D T + + FV A ++
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLAAM 67
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T+ +R
Sbjct: 68 NGRKIMGKEVKVNWATSPSSQKKDT-----SNHFHVFV--------GDLSPEITTDDIRA 114
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 115 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 173
Query: 295 RAPPVLPAAKETKTEN-SID 313
R PP A ET T++ S D
Sbjct: 174 RKPPAPKATYETNTKHLSFD 193
Score = 194 (73.4 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 51/192 (26%), Positives = 93/192 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ +A ++ S+ V+ SP +Y G + GLT
Sbjct: 158 GGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTE 217
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ FV F + E A+ ++NG +EG ++
Sbjct: 218 QLMRQTFSPFGQIMEVRVFPDK------GYSFVRFNSHESAAHAIVSVNGTSLEGHIVKC 271
Query: 290 NMANERAPPVLP 301
E V P
Sbjct: 272 YWGKETTDMVSP 283
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 55/185 (29%), Positives = 90/185 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + T+ LAE F++ G V A++ D S+GFGF+ + E A++A
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARD-ARGLSKGFGFIYFETPEAAQKACEEA 133
Query: 175 DGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + GR + V P + + G R AM N + S +Y GN+ + T L
Sbjct: 134 NNTFWHGRRINVA-PRIKASKPGNRDAM-----NQEERTPTS--SLYIGNIPYESTDAAL 185
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ FQ GL ++ +R TG RGF F+ E A++ + +E+ GR LR++ +
Sbjct: 186 NNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVKLMELMGRTLRVDYS 245
Query: 293 NERAP 297
R P
Sbjct: 246 TPRVP 250
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ P+ I+ NL + T++ L +AF ++ AKV + G S+GFGF+ FET E Q
Sbjct: 70 EQPNGIFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDA-RGLSKGFGFIYFETPEAAQK 128
Query: 273 ALDAMNGVEVEGRPLRLNMA 292
A + N GR R+N+A
Sbjct: 129 ACEEANNTFWHGR--RINVA 146
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 207 (77.9 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 63/181 (34%), Positives = 92/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++ D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLPVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F +LS KV+ + +G SR FGFV FE E+ Q A+ MNG EV GR L A +
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 195 (73.7 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 57/187 (30%), Positives = 91/187 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NLP + L ++F++ G + S +++ D + SR FGFV EEA++A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + + V R E +++ YQG +Y NL +
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DDKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 132 (51.5 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 41/166 (24%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV + + R GF F T E A+ + ++ M
Sbjct: 116 YDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGM 161
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIST 323
N ++G+P+R+ M ++R P + + E+SID L + ST
Sbjct: 73 NFEMLKGQPIRI-MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 207 (77.9 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPGL-LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F GQ G LS KV+ + + G+SRGFGFV+FE ED Q A+D MNG ++ G+ + + A
Sbjct: 209 EWF-GQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 58/187 (31%), Positives = 91/187 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E F + G S +++ D +SRGFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G + G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 141 (54.7 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00057, P = 0.00057
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 43/85 (50%), Positives = 55/85 (64%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
++LYVGNL Y + + L FA GTV SA++V DR T RSRGFGFV MGS +EA+ AI
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 173 LFDGSQIGGRTVKVNFPEVP--RGG 195
+G ++ GR + VN P RGG
Sbjct: 63 GLNGKEMDGRNLMVNEARPPERRGG 87
Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL + + L F + SA+V+ +R TGRSRGFGFV + ++ Q+A+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 277 MNGVEVEGRPLRLNMANERAPP 298
+NG E++GR L M NE PP
Sbjct: 64 LNGKEMDGRNL---MVNEARPP 82
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 55/195 (28%), Positives = 98/195 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKA 113
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 172
Query: 295 RAPPVLPAAKETKTE 309
R PP + E+ T+
Sbjct: 173 RKPPAPKSTYESNTK 187
Score = 156 (60.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 39/127 (30%), Positives = 65/127 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 230 QGLRDAF 236
Q +R F
Sbjct: 217 QLMRQTF 223
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 206 (77.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 63/181 (34%), Positives = 92/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A+ AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E +G + F + IY NL + Q L+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-VELGARAME----FTN----IYVKNLHVDVDEQRLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F +LS KV+ + +G SRGFGFV FE E+ Q A+ MNG EV GR L + A +
Sbjct: 210 LFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 197 (74.4 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 58/187 (31%), Positives = 93/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + L ++F++ G + S +++ D + SRGFGFV EEA++A+
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + V R E +++ YQG +Y NL +
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 43/166 (25%), Positives = 77/166 (46%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A++ S ++ M
Sbjct: 116 YDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGM 161
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIST 323
N ++G+P+R+ M ++R P + + E+SID L + ST
Sbjct: 73 NFEVIKGQPIRI-MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 206 (77.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 60/187 (32%), Positives = 92/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F++ G S +++ D T +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G I G+ V V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 190 (71.9 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 53/182 (29%), Positives = 93/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGDDMDDERLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + TG+S+GFGFV+FE ED A++ MNG ++ G+ + + A
Sbjct: 209 ELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 42/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T + A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGM 161
Score = 116 (45.9 bits), Expect = 0.00057, P = 0.00057
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 58/187 (31%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 189 (71.6 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 53/182 (29%), Positives = 94/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 209 ELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 133 (51.9 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 206 (77.6 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 52/166 (31%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L E F +AG V S + D T RS G+G+V + ++A A+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + GR ++V + + P L+ S G I+ NL + + L +
Sbjct: 107 NFMALNGRAIRVMY---------SVRDPSLRKSGVG------NIFIKNLDKSIDHKALHE 151
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F +LS KV + +G+S+G+GFV ++T E Q A+D +NG+
Sbjct: 152 TFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGM 196
Score = 186 (70.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 55/184 (29%), Positives = 87/184 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S++ L +VF E G S I+ D +S+GFGFV + ++A A+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G + V + + ER + K + S + D +Y NL +T
Sbjct: 285 NGKTFDDKEWFVG--KAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
LR+ F + S KV+ + +G SRG GFV F T E+ A+ MNG + +PL + +
Sbjct: 343 LREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVAL 401
Query: 292 ANER 295
A +
Sbjct: 402 AQRK 405
Score = 183 (69.5 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 53/182 (29%), Positives = 95/182 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ +L E F+ G + S ++ D + +S+G+GFV + E A+ AI
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P V + +R G K++ F + +Y NL L+ + L
Sbjct: 194 NGMLLNDKQVYVG-PFVHKL-QRDPSGEKVK-----FTN----VYVKNLSESLSDEELNK 242
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F G+ G+ ++ VI G+S+GFGFV FE ++D A+DA+NG + + + A +
Sbjct: 243 VF-GEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQK 301
Query: 295 RA 296
++
Sbjct: 302 KS 303
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 203 (76.5 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 57/187 (30%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 138
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 139 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 196
Query: 289 LNMANER 295
+ +A +
Sbjct: 197 VALAQRK 203
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 206 (77.6 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 58/187 (31%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 292 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 346
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 347 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 404
Query: 289 LNMANER 295
+ +A +
Sbjct: 405 VALAQRK 411
Score = 189 (71.6 bits), Expect = 7.4e-13, P = 7.4e-13
Identities = 53/182 (29%), Positives = 94/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 198
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 199 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 248
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 249 ELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 307
Query: 294 ER 295
++
Sbjct: 308 KK 309
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 204 (76.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 58/187 (31%), Positives = 93/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D +S+GFGFV+ E+A +A+
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 153
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 154 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 208
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 209 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 266
Query: 289 LNMANER 295
+ +A +
Sbjct: 267 VALAQRK 273
Score = 187 (70.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 53/182 (29%), Positives = 93/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 60
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 61 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 110
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 111 ELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 169
Query: 294 ER 295
++
Sbjct: 170 KK 171
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 204 (76.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 58/187 (31%), Positives = 93/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 187 (70.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 53/182 (29%), Positives = 93/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 209 ELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 133 (51.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 204 (76.9 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 58/187 (31%), Positives = 93/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 187 (70.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 53/182 (29%), Positives = 93/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 209 ELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 133 (51.9 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 198 (74.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 52/192 (27%), Positives = 92/192 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ FV F + E A+ ++NG +EG ++
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 270
Query: 290 NMANERAPPVLP 301
E + P
Sbjct: 271 YWGKETPDMISP 282
Score = 197 (74.4 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 55/195 (28%), Positives = 98/195 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKA 113
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 172
Query: 295 RAPPVLPAAKETKTE 309
R PP + E+ T+
Sbjct: 173 RKPPAPKSTYESNTK 187
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 203 (76.5 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 57/187 (30%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 189 (71.6 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 53/182 (29%), Positives = 94/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 209 ELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 133 (51.9 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 199 (75.1 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 53/201 (26%), Positives = 98/201 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L M + L VF G +A+++ ++ S G+GF+ + A+ ++ +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 175 DGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G+ + + ++N+ ++ G R A GP+ H ++ G+L +T L
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPE------------HTVFVGDLAPDVTDHML 189
Query: 233 RDAFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
+ F+ + AKV+ +R TGRS+G+GFV F + A+ MNG RP+R
Sbjct: 190 TETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGP 249
Query: 292 ANERAPPVL-PAAKETKTENS 311
A + P + PA+ + NS
Sbjct: 250 AANKKPLTMQPASYQNTQGNS 270
Score = 145 (56.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 52/189 (27%), Positives = 86/189 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR T RS+G+GFV E A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERA-AMGP-KLQNSY--QGFVDSPHK-IYAGNLGWGLT 228
+G R ++ P ++ M P QN+ G D + I+ G + +T
Sbjct: 235 MNGQYCSSRPMRTG----PAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVT 290
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
L+ F GQ G +++ + R GFV + + AL +NG ++ G+ +R
Sbjct: 291 EDDLKSVF-GQFG----ELVHVKIPAGKR-CGFVQYANRACAEQALSVLNGTQLGGQSIR 344
Query: 289 LNMANERAP 297
L+ R+P
Sbjct: 345 LSWG--RSP 351
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 202 (76.2 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 56/187 (29%), Positives = 95/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+++ V + V R E +L+ YQG +Y NL +
Sbjct: 181 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 235
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 236 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 293
Query: 289 LNMANER 295
+ +A +
Sbjct: 294 VALAQRK 300
Score = 192 (72.6 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 54/182 (29%), Positives = 94/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 87
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + LR
Sbjct: 88 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLR 137
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 138 ELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 196
Query: 294 ER 295
++
Sbjct: 197 KK 198
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 199 (75.1 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 55/175 (31%), Positives = 86/175 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + T L E+F G V A+I+ + RG G V E ++AI F
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKF 181
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG+ R + V P E A K + +D+ +++ NL + + Q L+D
Sbjct: 182 DGALFMDRKLMVRQDNPPP--EAAKEFSKKATREE--IDNGFEVFIINLPYSMNWQSLKD 237
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
F+ +L A V + + G SRGFG V + T +++ A+D NG+EVEGR L +
Sbjct: 238 MFKECGHVLRADVELD-FNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 201 (75.8 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + F+ G V ++ DR + RS+G +V AI L G ++ G + V
Sbjct: 183 LEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPLAIGL-TGQRVLGVPIIVQA 241
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + +++
Sbjct: 242 SQAEKN-RAAAMASMLQRGGAG----PMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLM 296
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ TGRS+G+GF++F AE + AL+ +NG E+ GRP+++ ER+
Sbjct: 297 MDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERS 344
Score = 141 (54.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + +++ D T RS+G+GF++ E AK+A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 324
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 325 LNGFELAGRPMKV 337
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 202 (76.2 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 56/187 (29%), Positives = 95/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+++ V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 192 (72.6 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 54/182 (29%), Positives = 94/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + LR
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLR 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 209 ELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 43/166 (25%), Positives = 73/166 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGM 161
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 197 (74.4 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 55/195 (28%), Positives = 98/195 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKA 113
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT- 172
Query: 295 RAPPVLPAAKETKTE 309
R PP + E+ T+
Sbjct: 173 RKPPAPKSTYESNTK 187
Score = 196 (74.1 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 51/198 (25%), Positives = 94/198 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V SP +Y G + GLT
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 216
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V ++ G+ F+ F + E A+ ++NG +EG ++
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDK------GYSFIRFSSHESAAHAIVSVNGTTIEGHVVKC 270
Query: 290 NMANERAPPVLPAAKETK 307
E + P ++ +
Sbjct: 271 YWGKETLDMINPVQQQNQ 288
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 202 (76.2 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 56/187 (29%), Positives = 95/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+++ V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 192 (72.6 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 54/182 (29%), Positives = 94/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + LR
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLR 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 209 ELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 43/166 (25%), Positives = 73/166 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGM 161
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 196 (74.1 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 53/188 (28%), Positives = 92/188 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
G +GGR ++ N+ P P+ + K Q ++ V+ SP +Y G + G
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQET--NTK-QLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
LT Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHV 286
Query: 287 LRLNMANE 294
++ E
Sbjct: 287 VKCYWGKE 294
Score = 183 (69.5 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 59/210 (28%), Positives = 101/210 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTE 309
+ GR +R N A R PP + +ET T+
Sbjct: 178 QWLGGRQIRTNWAT-RKPPAPKSTQETNTK 206
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 196 (74.1 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 53/188 (28%), Positives = 92/188 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
G +GGR ++ N+ P P+ + K Q ++ V+ SP +Y G + G
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQET--NTK-QLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
LT Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHV 286
Query: 287 LRLNMANE 294
++ E
Sbjct: 287 VKCYWGKE 294
Score = 183 (69.5 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 59/210 (28%), Positives = 101/210 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTE 309
+ GR +R N A R PP + +ET T+
Sbjct: 178 QWLGGRQIRTNWAT-RKPPAPKSTQETNTK 206
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 201 (75.8 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 52/185 (28%), Positives = 99/185 (53%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL S+ +L + F+ G + S ++ D + +S+G+GFV + E A++AI
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V P + R ER + K + F + +Y NL T
Sbjct: 182 EKLNGMLLNDKQVYVG-PFLRRQ-ERDSTANKTK-----FTN----VYVKNLAESTTDDD 230
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L++AF G+ G +++ V+ + G+S+GFGFV FE A+D A++++NG + + + +
Sbjct: 231 LKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 292 ANERA 296
A +++
Sbjct: 290 AQKKS 294
Score = 193 (73.0 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 48/166 (28%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F + GTV + + D VT RS G+G+V + ++A AI+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + G+ ++V + P ++ S G I+ NL + + L D
Sbjct: 98 NYIPLYGKPIRVMYSH---------RDPSVRRSGAG------NIFIKNLDESIDHKALHD 142
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F ++S KV + +G+S+G+GFV + E Q A++ +NG+
Sbjct: 143 TFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGM 187
Score = 181 (68.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 51/184 (27%), Positives = 87/184 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S T L F E G + SA ++ D +S+GFGFV + ++A A+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query: 175 DGSQIGGRTVKVNFPEVPRGGE---RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V + E R L+ + F S +Y NL ++ +
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSS--NLYVKNLDPSISDEK 333
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L++ F + S+KV+ + G S+G GFV F T E+ A+ ++G +E +PL + +
Sbjct: 334 LKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
Query: 292 ANER 295
A +
Sbjct: 393 AQRK 396
Score = 125 (49.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
+Y G+L + +T L DAF GQ G +++ +V + T RS G+G+V F +D A+
Sbjct: 38 LYVGDLDFNVTDSQLFDAF-GQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 277 MNGVEVEGRPLRLNMANERAPPV 299
+N + + G+P+R+ M + R P V
Sbjct: 97 LNYIPLYGKPIRV-MYSHRDPSV 118
Score = 115 (45.5 bits), Expect = 0.00074, P = 0.00074
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++ LYV NL S++ L E+F+ GTV S++++ D S+G GFV + EEA EA+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAM 375
Query: 172 RLFDGSQIGGRTVKV 186
G I + + V
Sbjct: 376 SQLSGKMIESKPLYV 390
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 201 (75.8 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 57/183 (31%), Positives = 98/183 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGDDMNDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F G+ G LS KV+ + G+S+GFGFV+FE ED Q A+D MNG ++ G+ + + A
Sbjct: 209 EMF-GKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA 266
Query: 293 NER 295
++
Sbjct: 267 QKK 269
Score = 194 (73.4 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 57/187 (30%), Positives = 93/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G + G+++ V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 146 (56.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 47/166 (28%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGRPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGM 161
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++GRP+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGRPVRI-MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 201 (75.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 57/187 (30%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 188 (71.2 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 53/182 (29%), Positives = 94/182 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG E+ G+ + + A
Sbjct: 209 ELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 133 (51.9 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIS 322
N ++G+P+R+ M ++R P + + + SID L + S
Sbjct: 73 NFDVIKGKPIRI-MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 120
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 198 (74.8 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 51/167 (30%), Positives = 84/167 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + F+ G V I+ DR + RS+G +V ++ AI L G ++ G + V
Sbjct: 197 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQA 255
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L +T LR + + + ++
Sbjct: 256 SQAEKN-RLAAMANNLQKGSGG----PVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLM 310
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ TGRS+G+GF+TF +E + AL+ +NG E+ GRP+R+ ER
Sbjct: 311 KDSETGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRIGHVTER 357
Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L ++T L + G + + ++ D T RS+G+GF+T E A+ A+
Sbjct: 279 RLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQ 338
Query: 174 FDGSQIGGRTVKV-NFPEVPRGG 195
+G ++ GR +++ + E P GG
Sbjct: 339 LNGFELAGRPMRIGHVTERPDGG 361
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 200 (75.5 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 274
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 275 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 332
Query: 289 LNMANER 295
+ +A +
Sbjct: 333 VALAQRK 339
Score = 174 (66.3 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 50/145 (34%), Positives = 78/145 (53%)
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGF 211
S+G+GFV + E A+ AI +G + R V V F R A +G + + F
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS--RKEREAELGARAKE----F 158
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDL 270
+ +Y N G + + L+D F G+ G LS KV+ + +G+S+GFGFV+FE ED
Sbjct: 159 TN----VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 212
Query: 271 QSALDAMNGVEVEGRPLRLNMANER 295
Q A+D MNG E+ G+ + + A ++
Sbjct: 213 QKAVDEMNGKELNGKQIYVGRAQKK 237
Score = 115 (45.5 bits), Expect = 0.00070, P = 0.00070
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ +V F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAP 297
N ++G+P+R+ M ++R P
Sbjct: 73 NFDVIKGKPVRI-MWSQRDP 91
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 196 (74.1 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 53/188 (28%), Positives = 92/188 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
G +GGR ++ N+ P P+ + K Q ++ V+ SP +Y G + G
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQET--NTK-QLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
LT Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHV 286
Query: 287 LRLNMANE 294
++ E
Sbjct: 287 VKCYWGKE 294
Score = 183 (69.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 59/210 (28%), Positives = 101/210 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTE 309
+ GR +R N A R PP + +ET T+
Sbjct: 178 QWLGGRQIRTNWAT-RKPPAPKSTQETNTK 206
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 196 (74.1 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 53/188 (28%), Positives = 92/188 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
G +GGR ++ N+ P P+ + K Q ++ V+ SP +Y G + G
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQET--NTK-QLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
LT Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHV 286
Query: 287 LRLNMANE 294
++ E
Sbjct: 287 VKCYWGKE 294
Score = 183 (69.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 59/210 (28%), Positives = 101/210 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTE 309
+ GR +R N A R PP + +ET T+
Sbjct: 178 QWLGGRQIRTNWAT-RKPPAPKSTQETNTK 206
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 197 (74.4 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 61/186 (32%), Positives = 92/186 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y GN+ +T L E+FA G + S +++ D+S +GFV A AI
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKS-SYGFVHYFDRRCASMAIMTL 120
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G I G+ +KVN+ A G + S S I+ G+L +T L D
Sbjct: 121 NGRHIFGQPMKVNWAY--------ATGQREDTS------SHFNIFVGDLSPEVTDAALFD 166
Query: 235 AFQGQPGLLS----AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
+F S A+V++++ TGRSRGFGFV+F +D Q+A++ MNG V R +R N
Sbjct: 167 SFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCN 226
Query: 291 MANERA 296
A + A
Sbjct: 227 WATKGA 232
Score = 130 (50.8 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 50/175 (28%), Positives = 79/175 (45%)
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAA 199
A +++D+ T RSRGFGFV+ + ++A+ AI +G + R ++ N+ G ++ +
Sbjct: 181 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHS 240
Query: 200 MGPK----LQN--SYQGFV----DSPHK------IYAGNLGWGLTSQGLRDAFQGQPGLL 243
K L N S G D+P +Y GNL +T L F L
Sbjct: 241 SDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFY----TL 296
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVE-VEGRPLRLNMANERAP 297
A VI E R +GFGFV + T ++ A+ N + R +R + N+ P
Sbjct: 297 GAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTP 351
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 195 (73.7 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 55/181 (30%), Positives = 91/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L +VF++ G S +++ D + +S+GFGFV+ S E AK+A+
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS-YQGFVDSPHKIYAGNLGWGLTSQG 231
+G I G+ + V + V R E M +L+ +G K+Y NL + +
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGV--KLYIKNLDDTIDDEK 308
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
LR+ F + KV+ E G+S+GFG + F + ED A+ MNG + +PL + +
Sbjct: 309 LRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIAL 366
Query: 292 A 292
A
Sbjct: 367 A 367
Score = 173 (66.0 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 51/181 (28%), Positives = 94/181 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L E F+ G + S++++ D S+G+ FV + A AI
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + G KV F V R R +L++ F + +Y N G + + L+D
Sbjct: 158 NGKLLKG--CKV-F--VGRFKNRKDREAELRSKASEFTN----VYIKNFGGDMDDERLKD 208
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +G+S+GFGFV+F++ E + A++ MNG ++ G+ + + A +
Sbjct: 209 VFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Query: 295 R 295
+
Sbjct: 268 K 268
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 202 (76.2 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 61/209 (29%), Positives = 101/209 (48%)
Query: 119 NLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
NL + E F+E AG V + + D+ + +S+G +V + E +A+ +G
Sbjct: 493 NLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALAA-NGM 551
Query: 178 QIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL-G--WGLTSQGLRD 234
+ R +K+ + + RAA K Q D P K+Y G L G +T Q L+
Sbjct: 552 MLKNRPIKIQSSQAEKN--RAAKAAKHQPIDPN--DIPLKLYIGGLLGPLSNITEQELKQ 607
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F +L ++ + YTG+S+GFGF+ F A + AL MNG+EV GR +++ A +
Sbjct: 608 LFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQD 667
Query: 295 RAPPVLPAAKETKTENSIDGSELLSSIST 323
L A T+ EN + ++ +I+T
Sbjct: 668 SK--YLLACDNTQ-ENILKQQQMAKNINT 693
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 202 (76.2 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 61/209 (29%), Positives = 101/209 (48%)
Query: 119 NLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177
NL + E F+E AG V + + D+ + +S+G +V + E +A+ +G
Sbjct: 493 NLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKALAA-NGM 551
Query: 178 QIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL-G--WGLTSQGLRD 234
+ R +K+ + + RAA K Q D P K+Y G L G +T Q L+
Sbjct: 552 MLKNRPIKIQSSQAEKN--RAAKAAKHQPIDPN--DIPLKLYIGGLLGPLSNITEQELKQ 607
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F +L ++ + YTG+S+GFGF+ F A + AL MNG+EV GR +++ A +
Sbjct: 608 LFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQD 667
Query: 295 RAPPVLPAAKETKTENSIDGSELLSSIST 323
L A T+ EN + ++ +I+T
Sbjct: 668 SK--YLLACDNTQ-ENILKQQQMAKNINT 693
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 195 (73.7 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG ++
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 272
Query: 290 NMANE 294
E
Sbjct: 273 YWGKE 277
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 54/195 (27%), Positives = 98/195 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + ++F++ G S +++ + ++ + FV +A A+
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKS 115
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT- 174
Query: 295 RAPPVLPAAKETKTE 309
R PP + +E T+
Sbjct: 175 RKPPAPKSTQENNTK 189
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 32/80 (40%), Positives = 56/80 (70%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D ++ + G L W + +GLRDAF+ L+ AKV+ ++++GRSRGFGF+TF+ + +
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 273 ALDAMNGVEVEGRPLRLNMA 292
A+ AMNG++++GR + ++ A
Sbjct: 64 AIAAMNGMDLDGRTITVDKA 83
Score = 144 (55.7 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R ++G L ++ + L + F + G + A++V D+ + RSRGFGF+T + EAI
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 174 FDGSQIGGRTVKVNFPEVPRGGE-RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + GRT+ V+ + +GG R G + ++ +G+ D +G G G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRD--RGY-DRDRSRPSGGRGGG------ 118
Query: 233 RDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVE 281
D F+ G+PG + + E + R G G F + +D S+ D G +
Sbjct: 119 -DCFKCGKPGHFARECPSE--SSRDGG-G--RFSSKDDRYSSKDDRYGAK 162
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 195 (73.7 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG ++
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 272
Query: 290 NMANE 294
E
Sbjct: 273 YWGKE 277
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 54/195 (27%), Positives = 98/195 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + ++F++ G S +++ + ++ + FV +A A+
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKS 115
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G + GR +R N A
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT- 174
Query: 295 RAPPVLPAAKETKTE 309
R PP + +E T+
Sbjct: 175 RKPPAPKSTQENNTK 189
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 195 (73.7 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 234
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG ++
Sbjct: 235 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 288
Query: 290 NMANE 294
E
Sbjct: 289 YWGKE 293
Score = 178 (67.7 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 58/210 (27%), Positives = 100/210 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 117
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 118 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 176
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTE 309
+ GR +R N A R PP + +E T+
Sbjct: 177 QWLGGRQIRTNWAT-RKPPAPKSTQENNTK 205
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 195 (73.7 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG ++
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 289
Query: 290 NMANE 294
E
Sbjct: 290 YWGKE 294
Score = 178 (67.7 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 58/210 (27%), Positives = 100/210 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTE 309
+ GR +R N A R PP + +E T+
Sbjct: 178 QWLGGRQIRTNWAT-RKPPAPKSTQENNTK 206
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 195 (73.7 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG ++
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 289
Query: 290 NMANE 294
E
Sbjct: 290 YWGKE 294
Score = 178 (67.7 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 58/210 (27%), Positives = 100/210 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTE 309
+ GR +R N A R PP + +E T+
Sbjct: 178 QWLGGRQIRTNWAT-RKPPAPKSTQENNTK 206
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 195 (73.7 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Q +R F ++ +V E+ G+ FV F T E A+ ++NG +EG ++
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 289
Query: 290 NMANE 294
E
Sbjct: 290 YWGKE 294
Score = 178 (67.7 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 58/210 (27%), Positives = 100/210 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
Query: 280 VEVEGRPLRLNMANERAPPVLPAAKETKTE 309
+ GR +R N A R PP + +E T+
Sbjct: 178 QWLGGRQIRTNWAT-RKPPAPKSTQENNTK 206
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 197 (74.4 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 53/184 (28%), Positives = 91/184 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG L +T L ++F G V + +I+ D+ + +GFV A A++
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAADRAMQTL 145
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G ++ ++VN+ +AA +++ F H I+ G+L + + L
Sbjct: 146 NGRRVHQSEIRVNW------AYQAATSATKEDTSNHF----H-IFVGDLSNEVNDEVLTQ 194
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + A+V+++ TGRSRG+GFV F D + AL +M+G + R +R N AN+
Sbjct: 195 AFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQ 254
Query: 295 RAPP 298
+ P
Sbjct: 255 KGQP 258
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 195 (73.7 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 53/181 (29%), Positives = 98/181 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL ++T +A +F + G+V ++++D D + FV +A +A++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQTM 104
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + R +KVN+ P G++ + K+ + + F H ++ G+L + +Q LR+
Sbjct: 105 NKRLLLDREMKVNWAVEP--GQQQS---KIDTT-RHF----H-VFVGDLSSEVDNQKLRE 153
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AFQ + AKVI + T +S+G+GFV++ E+ + A++ MNG + R +R N A
Sbjct: 154 AFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATR 213
Query: 295 R 295
+
Sbjct: 214 K 214
Score = 180 (68.4 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 49/178 (27%), Positives = 87/178 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L + + L E F G V+ A+++ D T +S+G+GFV+ EEA+ AI
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH----KIYAGNLGWGLTSQ 230
+G +G RT++ N+ + G++ + SY + +Y GN+ LT
Sbjct: 197 NGQWLGRRTIRTNWA-TRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTED 254
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+R F G ++ IF + +G+ FV F+ + A+ MN +V G+ +R
Sbjct: 255 EIRQGFASF-GRITEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVR 306
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 197 (74.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 49/187 (26%), Positives = 94/187 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + + ++IY ++ L+ ++
Sbjct: 147 MNSVMLGGRNIKVGRPGSI--GQAQPIIEQLAEEARAY----NRIYVASIHPDLSDDDIK 200
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ + S + E TG+ +GFGF+ +E + A+ +MN ++ G+ LR+ A
Sbjct: 201 SVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKAV 260
Query: 294 ERAPPVL 300
P+L
Sbjct: 261 TPPMPLL 267
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 195 (73.7 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 55/181 (30%), Positives = 91/181 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L +VF++ G S +++ D + +S+GFGFV+ S E AK+A+
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 308
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS-YQGFVDSPHKIYAGNLGWGLTSQG 231
+G I G+ + V + V R E M +L+ +G K+Y NL + +
Sbjct: 309 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGV--KLYIKNLDDTIDDEK 366
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
LR+ F + KV+ E G+S+GFG + F + ED A+ MNG + +PL + +
Sbjct: 367 LRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIAL 424
Query: 292 A 292
A
Sbjct: 425 A 425
Score = 173 (66.0 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 51/181 (28%), Positives = 94/181 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L E F+ G + S++++ D S+G+ FV + A AI
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + G KV F V R R +L++ F + +Y N G + + L+D
Sbjct: 216 NGKLLKG--CKV-F--VGRFKNRKDREAELRSKASEFTN----VYIKNFGGDMDDERLKD 266
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +G+S+GFGFV+F++ E + A++ MNG ++ G+ + + A +
Sbjct: 267 VFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Query: 295 R 295
+
Sbjct: 326 K 326
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 195 (73.7 bits), Expect = 8.6e-15, P = 8.6e-15
Identities = 54/185 (29%), Positives = 94/185 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VG+L + M + L F+ V+S +++ ++ T +S G+GFV S A+EA++ F
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 175 DGSQIGG--RTVKVNFPEVPRGGERAAM-GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
G + + ++N+ G +RA+ GP L I+ G+L ++
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLS------------IFVGDLAPDVSDAV 228
Query: 232 LRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L + F G+ P + AKV+ + TGRS+G+GFV F + A+ MNG R +R+
Sbjct: 229 LLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVG 288
Query: 291 MANER 295
+A +
Sbjct: 289 IATPK 293
Score = 138 (53.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 49/194 (25%), Positives = 83/194 (42%)
Query: 115 LYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L ++ + L E FA +V A++V D T RS+G+GFV G E A+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 174 FDGSQIGGRTVKVNFPEVPR----GGERAAMGPKLQNSYQG---FVDSPHK---IYAGNL 223
+G+ R ++V R G + + L + G D I+ G L
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283
+T + L F ++S K+ +G GFV F + + A+ +NG +
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 284 GRPLRLNMANERAP 297
+RL+ R+P
Sbjct: 389 KNTVRLSWG--RSP 400
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 198 (74.8 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 53/187 (28%), Positives = 91/187 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V N + L+ +F++ G + SA ++ D + +GFGFV + A +A+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S + G K++ + ER+A +L+ Y+ + Y G N+ L
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSA---ELKRKYEALKQERVQRYQGVNLYVKNIEEDLN 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
GLRD F + SAKV+ + GRS+GFGFV FE E+ +A+ MN + +PL
Sbjct: 356 DDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY 414
Query: 289 LNMANER 295
+ +A +
Sbjct: 415 VALAQRK 421
Score = 157 (60.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 48/184 (26%), Positives = 85/184 (46%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L ++ + L E F+ AG V S + D + S G+ +V +A+ A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + RA G I+ NL + ++ +
Sbjct: 117 TMNFEVIHGRPMRIMWSQRDPAARRAGNG---------------NIFIKNLDRVIDNKSV 161
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F +LS KV + G S+G+GFV FET Q+A++ +NG+ + + + +
Sbjct: 162 YDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKF 220
Query: 293 NERA 296
RA
Sbjct: 221 QPRA 224
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 47/197 (23%), Positives = 85/197 (43%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + S+ + F+ G + S ++ D S+G+GFV + A+ AI
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKV 205
Query: 175 DGSQIGGRTVKVN-F-PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V F P R E G K N ++ N G L + L
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTN-----------VFVKNFGEHLDQEKL 254
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
F + G +++ V+ G+ +GFGFV F + A++ +N +EG +L++
Sbjct: 255 SAMFS-KFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVC 313
Query: 293 NERAPPVLPAAKETKTE 309
+ A + K E
Sbjct: 314 RAQKKSERSAELKRKYE 330
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 195 (73.7 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 53/185 (28%), Positives = 90/185 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VTDRSRGFGFVTMGSVEEAKEAIRL 173
LYVG L +T L ++F G V S +I+ D+ + +GFV A+ A++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G +I ++VN+ + +++ F H I+ G+L + + L
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANK-------EDTSNHF----H-IFVGDLSNEVNDEVLL 199
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
AF + A+V+++ TGRSRG+GFV F D + AL +M+G + R +R N AN
Sbjct: 200 QAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWAN 259
Query: 294 ERAPP 298
++ P
Sbjct: 260 QKGQP 264
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 40/87 (45%), Positives = 52/87 (59%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L WG LRDAF ++ AKVI +R TGRSRGFGFV F +A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 277 MNGVEVEGRPLRLNMANERAPPVLPAA 303
M+G E+ GR +R+N AN+R P P A
Sbjct: 96 MDGKELNGRHIRVNPANDR--PSAPRA 120
Score = 157 (60.3 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 35/90 (38%), Positives = 49/90 (54%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +L++G L + +SL + FA G V A+++ DR T RSRGFGFV A AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 172 RLFDGSQIGGRTVKVN----FPEVPR--GG 195
DG ++ GR ++VN P PR GG
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAPRAYGG 123
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 41/100 (41%), Positives = 59/100 (59%)
Query: 214 SPH-KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
SP K++ G L W + Q L+DAF + ++ +++ +GRSRGFGFV F D S
Sbjct: 38 SPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALS 97
Query: 273 ALDAMNGVEVEGRPLRLNMANERA---PPVLPAAKETKTE 309
A DAM+G + GRPLR++ A ER P V+P ++K E
Sbjct: 98 AKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKSKRE 137
Score = 150 (57.9 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G L +S+ SL + F+ G VA I YD+ + RSRGFGFV +A A
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 172 RLFDGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNS 207
DG + GR ++++F E RGG + P+L S
Sbjct: 100 DAMDGKGLLGRPLRISFALERVRGGP--VVVPRLGKS 134
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 195 (73.7 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 58/184 (31%), Positives = 94/184 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L E F+ GT+ S ++ D VT RS+G+GFV E A+ AI
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G + + V V R ERA + +N+ +P +Y NL + L
Sbjct: 197 NGMLMNDKQVFVG--HFIRRQERA----RDENT-----PTPRFTNVYVKNLPKEIGEDEL 245
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
R F G+ G++S+ V+ +G SR FGFV FE E SA++ MNG+ + L + A
Sbjct: 246 RKTF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
Query: 293 NERA 296
+++
Sbjct: 305 QKKS 308
Score = 185 (70.2 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 52/182 (28%), Positives = 82/182 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NLP + L + F + G ++SA ++ D+ + SR FGFV E A A+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-KIYAGNLGWGLTSQGLR 233
+G +G + V + E Q F S +Y NL + + L+
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F + S+KV+ G SRGFGFV + E+ AL MNG + +PL + +A
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 294 ER 295
+
Sbjct: 409 RK 410
Score = 116 (45.9 bits), Expect = 0.00061, P = 0.00061
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+ NL S+ L E+F+E G V S++++ + SRGFGFV + EEA A+
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALS 390
Query: 173 LFDGSQIGGRTVKV 186
+G IG + + +
Sbjct: 391 EMNGKMIGRKPLYI 404
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D ++ + G L W Q L++AF ++ +K+I +R TGRSRGFGFVTF + E ++
Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
Query: 273 ALDAMNGVEVEGRPLRLNMANER 295
A++AMNG +++GR + +N A R
Sbjct: 63 AIEAMNGQDLDGRNITVNEAQSR 85
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R +VG L ++ SL F++ G V ++I+ DR T RSRGFGFVT S E ++AI
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR + VN
Sbjct: 67 MNGQDLDGRNITVN 80
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 194 (73.4 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 57/187 (30%), Positives = 89/187 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + S L +F E G S ++ D RSRGFGFV + +A+ A+
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + + R GE +++ YQG +Y NL +
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ + G SRGFGFV F + E+ A+ MNG V +PL
Sbjct: 307 DEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 289 LNMANER 295
+ +A +
Sbjct: 365 VALAQRK 371
Score = 190 (71.9 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 57/181 (31%), Positives = 89/181 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ N+ S+ + +L + F+ G + S ++V D + S+G+GFV + E A AI
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A MG K F + +Y N G + S+ L++
Sbjct: 159 NGMLLNDRKVFVGHFK-SRKEREAEMGAKAVE----FTN----VYIKNFGEDIDSEKLKN 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS V+ + GRSRGFGFV F D + A+ MNG E+ GR L + A +
Sbjct: 210 IFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 126 (49.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 40/166 (24%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L + F+ AG + S + D +T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G I+ N+ + ++ L
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVG---------------NIFIKNMDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGM 161
Score = 114 (45.2 bits), Expect = 0.00094, P = 0.00094
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L F ++S +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAP 297
N ++GRP+R+ M ++R P
Sbjct: 73 NYEVIKGRPIRI-MWSQRDP 91
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 188 (71.2 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 56/187 (29%), Positives = 93/187 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 65 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 121 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 175
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG V +PL
Sbjct: 176 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 233
Query: 289 LNMANER 295
+ +A +
Sbjct: 234 VALAQRK 240
Score = 170 (64.9 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 50/144 (34%), Positives = 77/144 (53%)
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGF 211
S+G+GFV + E A+ AI +G + R V V F R A +G + + F
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS--RKEREAELGARAKE----F 62
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
+ +Y N G + + L+D F G P L S KV+ + +G+S+GFGFV+FE ED Q
Sbjct: 63 TN----VYIKNFGEDMDDERLKDLF-G-PAL-SVKVMTDE-SGKSKGFGFVSFERHEDAQ 114
Query: 272 SALDAMNGVEVEGRPLRLNMANER 295
A+D MNG E+ G+ + + A ++
Sbjct: 115 KAVDEMNGKELNGKQIYVGRAQKK 138
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 193 (73.0 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 49/185 (26%), Positives = 90/185 (48%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A ++ L + + L E F+ G V ++ T R +G ++ E A+
Sbjct: 236 ARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL 295
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ-NSYQGFVDSPHKIYAGNLGWGLTSQ 230
L G ++ G + V + + + A P Q S+ G P ++Y G+L + +T
Sbjct: 296 GL-SGQRLLGVPIMVQHTQAEKNRLQNA-APAFQPKSHTG----PMRLYVGSLHFNITED 349
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
LR F+ + + ++I + TGRS+G+GF+T+ A+D + AL+ +NG E+ GR +++
Sbjct: 350 MLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVG 409
Query: 291 MANER 295
ER
Sbjct: 410 NVTER 414
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 51/183 (27%), Positives = 87/183 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V N+ + L E+F E G S +++ D + +S+GFGFV + E A++A+
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
G I G+ + V + + R E +L+ + IY NL + + L
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDETINDEKL 154
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
++ F + AKV+ E G+ +GFG V F + E+ A+D MNG V +PL + +
Sbjct: 155 KEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 212
Query: 293 NER 295
R
Sbjct: 213 QAR 215
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L WG L+ AF + A VI +R TGRSRGFGFV+F + +A+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 277 MNGVEVEGRPLRLNMANERA 296
M+G E+ GR +R+N+A ER+
Sbjct: 96 MDGKELNGRQIRVNLATERS 115
Score = 169 (64.5 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L + SSL + F G V A ++ DR T RSRGFGFV+ + A AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMG 201
+ DG ++ GR ++VN R++ G
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSSFG 123
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 130 (50.8 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 126 (49.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDG 176
+G
Sbjct: 185 GLNG 188
Score = 106 (42.4 bits), Expect = 0.00071, P = 0.00070
Identities = 21/90 (23%), Positives = 48/90 (53%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
DS + L +T + L+ F + S K++ ++ TG+S G+GFV + +D +
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 273 ALDAMNGVEVEGRPLRLNMANERAPPVLPA 302
A++ +NG+ ++ + ++++ A + + A
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA 125
Score = 89 (36.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NG 279
NG
Sbjct: 187 NG 188
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 191 (72.3 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 57/194 (29%), Positives = 89/194 (45%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G + + L E F+ G V A I+ DR T R+RGFGFV + A I +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA--DPAVAEIVI 64
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP---HKIYAGNLGWGLTSQ 230
+ I GR V+ VPR + + +S QG P KI+ G L +T
Sbjct: 65 TEKHNIDGRLVEAK-KAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL----DAMNGVEVEGR- 285
+ F+ V+++ T R RGFGF+T+++ E ++ L +NG VE +
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKR 182
Query: 286 --PLRLNMANERAP 297
P L+ R+P
Sbjct: 183 AVPKELSPGPSRSP 196
Score = 146 (56.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 41/128 (32%), Positives = 62/128 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP S+T S F + GT ++YD T R RGFGF+T S EEA E + L
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS-EEAVEKVLL 167
Query: 174 FDGSQIGGRTVKVN--FP-EVPRGGERAAMGP-------KLQNSYQGFVDSPHKIYAGNL 223
++ G+ V+V P E+ G R+ +G ++ N G+ + G
Sbjct: 168 KTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVG-- 225
Query: 224 GWGLTSQG 231
G+GL G
Sbjct: 226 GYGLRMDG 233
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 192 (72.6 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 51/169 (30%), Positives = 87/169 (51%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 120 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDVAIDNKA 164
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + G S+G+GFV +ET E A+ +NG+
Sbjct: 165 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGM 212
Score = 181 (68.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 48/181 (26%), Positives = 88/181 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K F + IY N+ +T R
Sbjct: 210 NGMLLNEKKVYVGH-HIPKKDRQS----KFDEMKANFTN----IYVKNINPEVTDDEFRT 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F+ + S+ + ++ TG+SRGFGFV F + ED A+ +N E G+ L + A +
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQK 320
Query: 295 R 295
+
Sbjct: 321 K 321
Score = 123 (48.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 45/146 (30%), Positives = 67/146 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+YV N+ +T +F + G V S+ + D+ T +SRGFGFV S E+A +A+
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 172 --RLFDGSQIG-GRTVKVNFPEVP-RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ F G + GR K + E R AA K + YQG +Y NL +
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKA-SKYQGV-----NLYIKNLDDEV 357
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYT 253
+ LR F + SAKV+ + T
Sbjct: 358 DDEKLRQLFSEFGPITSAKVMRDSIT 383
Score = 79 (32.9 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 254 GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
G+S+GFGFV F +D A+ MN V +PL + +A +
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRK 471
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 187 (70.9 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G + YSM SL E F + G V ++ DR T RSRGFGFVT S E A AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 172 RLFDGSQIGGRTVKVNF 188
+ DG + GR VKVN+
Sbjct: 99 QALDGRDLHGRVVKVNY 115
Score = 177 (67.4 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
S K++ G + + + LR+AF ++ +VI +R TGRSRGFGFVTF ++E SA
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 274 LDAMNGVEVEGRPLRLNMANER 295
+ A++G ++ GR +++N AN+R
Sbjct: 98 IQALDGRDLHGRVVKVNYANDR 119
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQS 272
S +KIY G+L + +T+ L+ F GQ G + AK+I +R TGRS+GF F+T+ T + Q
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFF-GQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 273 ALDAMNGVEVEGRPLRLNMANE 294
A+ NG++++GR +R+N+A E
Sbjct: 75 AVSKANGIDLQGRKIRVNIARE 96
Score = 164 (62.8 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVG+L Y +T+ L F + G + A+++ DR T RS+GF F+T G+ + A+EA+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 174 FDGSQIGGRTVKVNFPEVPRGGER 197
+G + GR ++VN G R
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRR 102
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQS 272
S +KIY G+L + +T+ L+ F GQ G + AK+I +R TGRS+GF F+T+ T + Q
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFF-GQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 273 ALDAMNGVEVEGRPLRLNMANE 294
A+ NG++++GR +R+N+A E
Sbjct: 75 AVSKANGIDLQGRKIRVNIARE 96
Score = 164 (62.8 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVG+L Y +T+ L F + G + A+++ DR T RS+GF F+T G+ + A+EA+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 174 FDGSQIGGRTVKVNFPEVPRGGER 197
+G + GR ++VN G R
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRR 102
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/75 (49%), Positives = 46/75 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNL + T L E F+ G V A ++ DR TDRSRGFGFVT S EA+ A+
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 172 RLFDGSQIGGRTVKV 186
DG ++ GR V V
Sbjct: 62 SGMDGKELNGRRVSV 76
Score = 156 (60.0 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++Y GNL T LR+AF G ++ A V+ +RYT RSRGFGFVT+ + + ++A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 277 MNGVEVEGRPLRLNM 291
M+G E+ GR + + +
Sbjct: 64 MDGKELNGRRVSVKL 78
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 57/187 (30%), Positives = 90/187 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA +++S + KI+ G + LR
Sbjct: 71 RP-HKVDGRVVE------PK---RAV---SIEDSQRPGAYLNMKIFVGAIKEDTEEHHLR 117
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSAL----DAMNG--VEVEGRP 286
D F GQ G +++ +R +G+ RGF FVTF+ + + + +NG EV P
Sbjct: 118 DYF-GQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAP 176
Query: 287 LRLNMAN 293
+ MA+
Sbjct: 177 SKQEMAS 183
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D ++ + G L W + L AF ++ +K+I +R TGRSRGFGFVTF+ + ++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 273 ALDAMNGVEVEGRPLRLNMANER 295
A++ MNG +++GR + +N A R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 146 (56.5 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R +VG L ++ +L FA+ G V ++I+ DR T RSRGFGFVT + K+AI
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 174 FDGSQIGGRTVKVN 187
+G + GR++ VN
Sbjct: 69 MNGQDLDGRSITVN 82
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 189 (71.6 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 53/183 (28%), Positives = 89/183 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M +L +F G V S +++ D +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ--GFVDSPHKIYAGNLGWGLTSQGL 232
+G ++ G+ + V P + + K + Q G +Y NL G+ + L
Sbjct: 252 NGKELNGKHIYVG-PAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F + S KV+ E GRS+GFGFV F + E+ A+ MNG V +PL + +A
Sbjct: 311 QKEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Query: 293 NER 295
+
Sbjct: 369 QRK 371
Score = 189 (71.6 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 57/182 (31%), Positives = 96/182 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F+ G + S ++V D + S+G GFV + E A+ AI
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + ER A +L + F + +Y N G + + L
Sbjct: 159 NGMLLNDRKVFVG--QFKSRKEREA---ELGTRTKEFTN----VYIKNFGDRMDDKTLNG 209
Query: 235 AFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F G+ G +LS KV+ + G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A
Sbjct: 210 LF-GRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQ 267
Query: 294 ER 295
++
Sbjct: 268 KK 269
Score = 135 (52.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 45/166 (27%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRRSGVG------NVFIKNLNKTIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGM 161
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 186 (70.5 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 58/184 (31%), Positives = 94/184 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ S L E+ +AG V S + DRVT +GFGFV E+A AI+
Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ +KVN +A+ K N +D I+ GNL + + L
Sbjct: 73 ILNMIKLYGKPIKVN---------KASAHEK--N-----MDVGANIFVGNLDPEVDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + +G S+GF F+ F + E +AL+AMNG + R + ++
Sbjct: 117 YDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 176
Query: 292 ANER 295
A +R
Sbjct: 177 AFKR 180
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 186 (70.5 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 58/184 (31%), Positives = 94/184 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ S L E+ +AG V S + DRVT +GFGFV E+A AI+
Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ +KVN +A+ K N +D I+ GNL + + L
Sbjct: 73 ILNMIKLYGKPIKVN---------KASAHEK--N-----MDVGANIFVGNLDPEVDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + +G S+GF F+ F + E +AL+AMNG + R + ++
Sbjct: 117 YDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 176
Query: 292 ANER 295
A +R
Sbjct: 177 AFKR 180
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 170 (64.9 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVP 192
+G + GR ++V+ P P
Sbjct: 67 MNGKSVDGRQIRVDQPLRP 85
Score = 149 (57.5 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLN 290
MNG V+GR +R++
Sbjct: 67 MNGKSVDGRQIRVD 80
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 185 (70.2 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 52/183 (28%), Positives = 93/183 (50%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +Y+GNL ++ S + E+ +AG + + + DRVT +G+GFV S E+A+ A R
Sbjct: 13 ATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASR 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ +G ++ G+ ++VN A K Q S V+ +++ GNL +T Q L
Sbjct: 73 IMNGIRLYGKPIRVN----------KASADK-QKS----VEIGAELFVGNLDPMVTEQVL 117
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F L++ + + S+G+GFV+F E +A+ MNG + + + + A
Sbjct: 118 YDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYA 177
Query: 293 NER 295
++
Sbjct: 178 YKK 180
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 186 (70.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 59/196 (30%), Positives = 93/196 (47%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G + + L + F+ G V A I+ DR T R+RGFGF+ ++ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 174 FDGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
D I GRTV+ VPR + R A L + G KI+ G L +T
Sbjct: 65 MDKHIIDGRTVEAK-KAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET--AED--LQSALDAMNG--VEVE 283
+ ++ F + V+++ T R RGFGF+TF++ A D L +NG VEV+
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Query: 284 GR-PLRLN-MANERAP 297
P ++ ++N R+P
Sbjct: 184 RAVPKEISPVSNIRSP 199
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 187 (70.9 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG+L S++ + L ++F+ G+V+S + D +T S G+ +V E ++AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ G I+ NL + ++
Sbjct: 97 EQLNYTPIKGRLCRIMWSQ---------RDPSLRKKGSG------NIFIKNLHPDIDNKA 141
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
L D F +LS+K+ + G+S+GFGFV FE + A+DA+NG+ + G+ +
Sbjct: 142 LYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196
Score = 183 (69.5 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 54/201 (26%), Positives = 94/201 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ T E+FA+ G + SA + D + +GFGFV E+A +A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK---IYAGNLGWGLTSQG 231
+ S++ G + V + ER + K +Y+ + ++ ++ NL + +
Sbjct: 280 NDSELNGEKLYVG--RAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK 337
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L + F + SAKV+ G+S+GFGFV F T E+ A+ N V G+PL + +
Sbjct: 338 LEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 292 ANERAPPVLPAAKETKTENSI 312
A + A++ + N +
Sbjct: 397 AQRKDVRRSQLAQQIQARNQM 417
Score = 167 (63.8 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 49/184 (26%), Positives = 93/184 (50%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + +L+ + + + +Y N+ T +
Sbjct: 184 DALNGMLLNGQEIYVA-PHLSRK-ERDS---QLEETKAHYTN----LYVKNINSETTDEQ 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
++ F ++SA + + G+ +GFGFV +E ED A++A+N E+ G L +
Sbjct: 235 FQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGR 293
Query: 292 ANER 295
A ++
Sbjct: 294 AQKK 297
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 187 (70.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 51/182 (28%), Positives = 86/182 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L E FAE G + S I D RG+ FV + E+A+ A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGP-KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G++ G + + V + E+ K ++ Q + IY N+ +T + LR
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F + S K++ + G+S+GFGFV F T E+ A+ +G G+PL + +A
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 294 ER 295
++
Sbjct: 381 KK 382
Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 51/194 (26%), Positives = 90/194 (46%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L S+T L + FAE ++ S + D + RS +G+ S ++A AI
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ S + G+ ++V + + P + + G ++ NL +T+ L
Sbjct: 84 KKNNSLLNGKMIRVMW---------SVRAPDARRNGVG------NVFVKNLPESVTNAVL 128
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+D F+ ++S KV G+SRG+GFV FE + +A+ +N V + + +
Sbjct: 129 QDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKF 187
Query: 293 NERAPPVLPAAKET 306
++ V P K T
Sbjct: 188 MKKTDRVKPEEKYT 201
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 45/183 (24%), Positives = 87/183 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
++V NLP S+T++ L ++F + G + S ++ + D +SRG+GFV + A AI+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA--TLEDGKSRGYGFVQFEQEDAAHAAIQT 171
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ + + + + V + + +R K N +Y NL ++ LR
Sbjct: 172 LNSTIVADKEIYVG--KFMKKTDRVKPEEKYTN-----------LYMKNLDADVSEDLLR 218
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+ F + G + + I + RG+ FV F+ ED + A + +NG + + L + A
Sbjct: 219 EKF-AEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
Query: 294 ERA 296
++A
Sbjct: 278 KKA 280
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+ +YV N+ ++T L + F++ GT+ S +++ D +S+GFGFV + EEA +A++
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVK 362
Query: 173 LFDGSQIGGRTVKV 186
F G G+ + V
Sbjct: 363 TFHGQMFHGKPLYV 376
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 179 (68.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 50/187 (26%), Positives = 91/187 (48%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L NLPY +T L EVF +A EI +S+G ++ + +A++ +
Sbjct: 46 ARTLLAKNLPYKVTQDELKEVFEDA-----VEIRLVSKDGKSKGIAYIEFKTEADAEKTL 100
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
G++I GR++ + + +G + G K +++ G + NL + T +
Sbjct: 101 EEKQGTEIDGRSISLYYTG-EKGQNQDFRGGK-NSTWSG---ESKTLVLSNLAYSATEET 155
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L++ F+ + KV + G+S+G+ F+ F + ED + AL++ N E+EGR +RL +
Sbjct: 156 LQEVFEKATFI---KVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 211
Query: 292 ANERAPP 298
R P
Sbjct: 212 QGPRGSP 218
Score = 177 (67.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 47/173 (27%), Positives = 84/173 (48%)
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
++ S+ E E A+ V +S+G+ F+ S E+AKEA+ + +I GR
Sbjct: 146 NLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 205
Query: 183 TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
+++ + PRG A P ++ L T + L+++F G
Sbjct: 206 AIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEETTEETLKESFDGS--- 249
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ A+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A +
Sbjct: 250 IRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 302
Score = 37 (18.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 302 AAKETKTENSIDGSEL 317
AAKE + IDG+++
Sbjct: 279 AAKEAMEDGEIDGNKV 294
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 148 (57.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 190 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 235
Score = 126 (49.4 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 46 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 105
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 106 NGLRLQTKTIKVSY 119
Score = 122 (48.0 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 330 NGYRLGDRVLQVSF 343
Score = 100 (40.3 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 192 NGQKPSGATEPITVKFAN 209
Score = 78 (32.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 296 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 348
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 187 (70.9 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 52/208 (25%), Positives = 101/208 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NL + L F++ G + A +V + T +RG+GFVT +E+A+ A +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV--DSPHKIYAGNLGWGLTS-QG 231
++ GR ++++F PR +R+ + + + + D+ ++ NL W + Q
Sbjct: 67 KNKKLHGRILRLDFA-TPR--KRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQH 123
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L F + G + I + GR GF FV + + + A++++NG E++GRP+ ++
Sbjct: 124 LEPHFS-KFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 292 ANERAPPVLPAAKETKTENSIDGSELLS 319
A + K+ +E + E +S
Sbjct: 183 AVSKDAFEATTLKDASSEE--ENKEFVS 208
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 184 (69.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 AAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + TG S+G+ F+ F + + +A++AMNG + RP+ ++
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 292 A 292
A
Sbjct: 177 A 177
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 167 (63.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T Q L DAF + + V R T RSRGFGFVTFE +D + AL+
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 66 MNGKSVDGRTIRVDEAGK 83
Score = 166 (63.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 30/82 (36%), Positives = 53/82 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL + F++ G + + + +R T+RSRGFGFVT + ++AK+A+
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+G + GRT++V+ E +GG
Sbjct: 66 MNGKSVDGRTIRVD--EAGKGG 85
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 167 (63.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 45/153 (29%), Positives = 77/153 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT-SQGL 232
+G + GR ++V+ + + + + G Y+G + G G G S+G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSDNRSRG------YRGGSAGGRGFFRGGRGRGRGFSRGG 118
Query: 233 RDAFQGQPGLLSAKVIF----ERYTGRSRGFGF 261
D G S + + Y+ RS+G G+
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGY 151
Score = 154 (59.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 167 (63.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 45/153 (29%), Positives = 77/153 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT-SQGL 232
+G + GR ++V+ + + + + G Y+G + G G G S+G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSDNRSRG------YRGGSAGGRGFFRGGRGRGRGFSRGG 118
Query: 233 RDAFQGQPGLLSAKVIF----ERYTGRSRGFGF 261
D G S + + Y+ RS+G G+
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGY 151
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 167 (63.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 45/153 (29%), Positives = 77/153 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT-SQGL 232
+G + GR ++V+ + + + + G Y+G + G G G S+G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSDNRSRG------YRGGSAGGRGFFRGGRGRGRGFSRGG 118
Query: 233 RDAFQGQPGLLSAKVIF----ERYTGRSRGFGF 261
D G S + + Y+ RS+G G+
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGY 151
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 167 (63.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 36/95 (37%), Positives = 54/95 (56%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y G L G L+DAF G+ A+V+ + TGRSRG+GFV F + + SA+ A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 277 MNGVEVEGRPLRLNMANERAPPVLPAAKETKTENS 311
MNG E+ G + +N+A + P LP + + E +
Sbjct: 92 MNGQELNGFNISVNVAKDW--PSLPLSLDESIEEA 124
Score = 130 (50.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +LY+G L SL + F+ V A ++ ++VT RSRG+GFV S + A AI
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 172 RLFDGSQIGGRTVKVN----FPEVP 192
+G ++ G + VN +P +P
Sbjct: 90 SAMNGQELNGFNISVNVAKDWPSLP 114
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 145 (56.1 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPPGATEPITVKFANNPSQKTNQAI---LSQLYQ----SPNRRYPGPL 230
Score = 130 (50.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 325 NGYRLGDRVLQVSF 338
Score = 99 (39.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 74 (31.1 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +
Sbjct: 291 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 342
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + TG S+G+ F+ F + + +A++AMNG + RP+ ++
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 292 A 292
A
Sbjct: 177 A 177
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 182 (69.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 51/183 (27%), Positives = 90/183 (49%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +Y+GNL +T S L E+ +AG V + I DRV + GFGF ++ + A +
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN RG +G L + GNL + + L
Sbjct: 71 ILNQVKLFGKPIRVNRASQDRG-VNTLIGANL--------------FVGNLDPLVDERVL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
D F L+ A + GRS+G+GFV++++ E +A++AMN + +P+ ++ A
Sbjct: 116 YDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175
Query: 293 NER 295
+R
Sbjct: 176 FKR 178
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 52/186 (27%), Positives = 89/186 (47%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++VG L TS+ + F + G + + I+ DR T + RGFGFVT + I
Sbjct: 41 AGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI 100
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ D I G+ V++ +PRG +M N ++ KI+ G + +
Sbjct: 101 Q--DNHIIIGKQVEIK-RTIPRG----SMS---SNDFK-----TKKIFVGGIPSSVDDDE 145
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
++ F L +++ + TGRSRGFGFVT+E+ + + L N +E+ G + +
Sbjct: 146 FKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKK 205
Query: 292 ANERAP 297
A + P
Sbjct: 206 AEPKKP 211
Score = 114 (45.2 bits), Expect = 0.00054, P = 0.00054
Identities = 30/118 (25%), Positives = 49/118 (41%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P S+ E F + G + +I+ D T RSRGFGFVT S + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ ++ G V++ E + + +S F Y G G G G
Sbjct: 191 GNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDGYGGGHGGGYGGPG 248
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + TG S+G+ F+ F + + +A++AMNG + RP+ ++
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 292 A 292
A
Sbjct: 177 A 177
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + TG S+G+ F+ F + + +A++AMNG + RP+ ++
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 292 A 292
A
Sbjct: 177 A 177
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + TG S+G+ F+ F + + +A++AMNG + RP+ ++
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 292 A 292
A
Sbjct: 177 A 177
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + TG S+G+ F+ F + + +A++AMNG + RP+ ++
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 292 A 292
A
Sbjct: 177 A 177
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + TG S+G+ F+ F + + +A++AMNG + RP+ ++
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 292 A 292
A
Sbjct: 177 A 177
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F +L K++ + TG S+G+ F+ F + + +A++AMNG + RP+ ++
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
Query: 292 A 292
A
Sbjct: 177 A 177
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 148 (57.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 237
Score = 126 (49.4 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 108 NGLRLQTKTIKVSY 121
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 345 NGYRLGDRVLQVSF 358
Score = 100 (40.3 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 194 NGQKPSGATEPITVKFAN 211
Score = 78 (32.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 311 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 363
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 148 (57.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 237
Score = 126 (49.4 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 108 NGLRLQTKTIKVSY 121
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 345 NGYRLGDRVLQVSF 358
Score = 100 (40.3 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 194 NGQKPSGATEPITVKFAN 211
Score = 78 (32.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 311 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 363
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 183 (69.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 52/183 (28%), Positives = 86/183 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V N M L E+F+ G S +++ D + +S+GFGFV + E A++A+
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
G I G+ + V + + R E +L+ + IY NL + + L
Sbjct: 260 HGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDETIDDEKL 318
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
++ F + AKV+ E G+ +GFG V F + ED A+D MNG V +PL + +
Sbjct: 319 KEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLG 376
Query: 293 NER 295
R
Sbjct: 377 QAR 379
Score = 170 (64.9 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 50/181 (27%), Positives = 94/181 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L +F+ G + S ++V D + S+G+ +V S+ A AI
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G ++ R V V + P ERAA +++ + + ++ N G + + L++
Sbjct: 166 NGVRLNNRQVYVGRFKFPE--ERAA---EVRTRDRATFTN---VFVKNFGNDMDDEKLKE 217
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F G S KVI + +G+S+GFGFV +ET E Q A+ ++G + G+ L + A +
Sbjct: 218 IFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQK 276
Query: 295 R 295
+
Sbjct: 277 K 277
Score = 83 (34.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T L + F AG + I D VT G+G+V +A+ A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 173 LFDGSQIGGRTVKV 186
+ I G+ ++
Sbjct: 78 TMNFDLINGKPFRL 91
Score = 78 (32.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 27/94 (28%), Positives = 43/94 (45%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ NL + ++ L F +LS KV+ + G S+G+ +V F++ A+ M
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 278 NGVEVEGRPL---RLNMANERAPPVLPAAKETKT 308
NGV + R + R ERA V + T T
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFT 199
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 186 (70.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/174 (29%), Positives = 90/174 (51%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+ ++L E+F+ G V+S + D V+ +S G+ +V E+ ++AI
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P + S G I+ NL + ++
Sbjct: 111 EELNYNPIEGRPCRIMWSQ---------RDPSARRSGDG------NIFIKNLHPAIDNKA 155
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
L D F +LS KV + + G+S+ FGFV +ETAE ++A++ +NG+ + R
Sbjct: 156 LHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 208
Score = 180 (68.4 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 52/187 (27%), Positives = 94/187 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + + S ++F+ G + S + D+ +S+GFGFV E A +A+
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ +I G+ + V + R ER +L+ Y+ ++ K ++ NL +
Sbjct: 294 NDKEINGQKIYVGRAQKKR--ERLE---ELKKQYEAVRLEKLAKYQGVNLFVKNLDDTID 348
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
S+ L + F+ + SAKV+ + G+S+GFGFV F T E+ A+ MN + G+PL
Sbjct: 349 SEKLEEEFKPFGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLY 407
Query: 289 LNMANER 295
+ +A +
Sbjct: 408 VALAQRK 414
Score = 141 (54.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 43/182 (23%), Positives = 85/182 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F+ G + S ++ D +S+ FGFV + E A+ AI
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENV 200
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + + + K + F + IY N+ + +
Sbjct: 201 NGMLLNDREVFVG-KHISKKDRES----KFEEMKANFTN----IYVKNIDLNYSEESFEK 251
Query: 235 AFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F P G +++ + + G+S+GFGFV FE E A++ +N E+ G+ + + A
Sbjct: 252 LFS--PFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQ 309
Query: 294 ER 295
++
Sbjct: 310 KK 311
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 148 (57.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 197 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 242
Score = 126 (49.4 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 113 NGLRLQTKTIKVSY 126
Score = 122 (48.0 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 350 NGYRLGDRVLQVSF 363
Score = 100 (40.3 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 199 NGQKPSGATEPITVKFAN 216
Score = 78 (32.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 316 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 368
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 148 (57.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 230
Score = 126 (49.4 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 122 (48.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 352 NGYRLGDRVLQVSF 365
Score = 100 (40.3 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 187 NGQKPSGATEPITVKFAN 204
Score = 78 (32.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 318 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 370
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 148 (57.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 230
Score = 126 (49.4 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 122 (48.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 352 NGYRLGDRVLQVSF 365
Score = 100 (40.3 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 187 NGQKPSGATEPITVKFAN 204
Score = 78 (32.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 318 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 370
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 145 (56.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPPGATEPITVKFANNPSQKTNQAI---LSQLYQ----SPNRRYPGPL 230
Score = 130 (50.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 99 (39.9 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 74 (31.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 145 (56.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPPGATEPITVKFANNPSQKTNQAI---LSQLYQ----SPNRRYPGPL 230
Score = 130 (50.8 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 339 NGYRLGDRVLQVSF 352
Score = 99 (39.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 187 NGQKPPGATEPITVKFAN 204
Score = 74 (31.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +
Sbjct: 305 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 356
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 148 (57.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 237
Score = 126 (49.4 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 108 NGLRLQTKTIKVSY 121
Score = 122 (48.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 359 NGYRLGDRVLQVSF 372
Score = 100 (40.3 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 194 NGQKPSGATEPITVKFAN 211
Score = 78 (32.5 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 325 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 377
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 148 (57.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 237
Score = 126 (49.4 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 108 NGLRLQTKTIKVSY 121
Score = 122 (48.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 359 NGYRLGDRVLQVSF 372
Score = 100 (40.3 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 194 NGQKPSGATEPITVKFAN 211
Score = 78 (32.5 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 325 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 377
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 148 (57.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 148 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 208 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 253
Score = 126 (49.4 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 64 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 123
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 124 NGLRLQTKTIKVSY 137
Score = 122 (48.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 361 NGYRLGDRVLQVSF 374
Score = 100 (40.3 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 210 NGQKPSGATEPITVKFAN 227
Score = 78 (32.5 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 327 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 379
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 166 (63.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + T SL +VF++ G VA +V DR + RSRGFGFVT + E+AK+A+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T + L F + V+ +R + RSRGFGFVTFE ED + A+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 148 (57.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 136 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 196 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 241
Score = 126 (49.4 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 52 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 111
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 112 NGLRLQTKTIKVSY 125
Score = 122 (48.0 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 363 NGYRLGDRVLQVSF 376
Score = 100 (40.3 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 198 NGQKPSGATEPITVKFAN 215
Score = 78 (32.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 329 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 381
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 148 (57.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 197 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 242
Score = 126 (49.4 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 113 NGLRLQTKTIKVSY 126
Score = 122 (48.0 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 364 NGYRLGDRVLQVSF 377
Score = 100 (40.3 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 199 NGQKPSGATEPITVKFAN 216
Score = 78 (32.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 330 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 382
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 148 (57.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 197 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 242
Score = 126 (49.4 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 113 NGLRLQTKTIKVSY 126
Score = 122 (48.0 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 364 NGYRLGDRVLQVSF 377
Score = 100 (40.3 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 199 NGQKPSGATEPITVKFAN 216
Score = 78 (32.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +A
Sbjct: 330 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 382
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 184 (69.8 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 49/184 (26%), Positives = 92/184 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL S++ L +F+ G V S +I+ + D + F+ + + A A+
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP---YAFIEYSNYQAATTALTAM 65
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + +KVN+ P G + PK + S H I+ G+L + ++ LR+
Sbjct: 66 NKRLFLEKEIKVNWATSP-GNQ-----PKTD------ISSHHHIFVGDLSPEIETETLRE 113
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
AF + + +++ + +T +S+G+ FV+F + ++A+ AMNG + R +R N +
Sbjct: 114 AFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTR 173
Query: 295 RAPP 298
+ PP
Sbjct: 174 KLPP 177
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 182 (69.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 50/184 (27%), Positives = 96/184 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT+ + +GF+ S E+A AI+
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K +D ++ GNL + + L
Sbjct: 85 VLNMIKLHGKPIRVN---------KASQDKKS-------LDVGANLFIGNLDPDVDEKLL 128
Query: 233 RDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
D F + S K++ + TG SRGFGF+++++ E +A+++M G + R + ++
Sbjct: 129 YDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSY 188
Query: 292 ANER 295
A ++
Sbjct: 189 AYKK 192
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 186 (70.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 51/169 (30%), Positives = 85/169 (50%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + A+
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 101 DELNYTLIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDSAIDNKA 145
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 146 LHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGM 193
Score = 163 (62.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 47/181 (25%), Positives = 88/181 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + IY N+ + + R
Sbjct: 191 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----IYIKNIDPEVEDEEFRK 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN EV + L + A +
Sbjct: 242 LFE-KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Query: 295 R 295
+
Sbjct: 301 K 301
Score = 95 (38.5 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 35/140 (25%), Positives = 60/140 (42%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ + ++F + G + SA + D +SRGFGFV + E A+ A+
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 175 DGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ ++ GR K + E + A + + YQG +Y NL +
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV-----NLYVKNLTDDVD 338
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
LR+ F + SAKV+
Sbjct: 339 DDKLRELFGPYGTITSAKVM 358
Score = 85 (35.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 254 GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
G+S+GFGFV F + ++ A+ MN V G+PL + +A +
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 145 (56.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 213 GLNGQKPPGATEPITVKFANNPSQKTNQAI---LSQLYQ----SPNRRYPGPL 258
Score = 130 (50.8 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 129 NGLRLQTKTIKVSY 142
Score = 124 (48.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 366 NGYRLGDRVLQVSF 379
Score = 99 (39.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 215 NGQKPPGATEPITVKFAN 232
Score = 74 (31.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +
Sbjct: 332 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 383
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 145 (56.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 214 GLNGQKPPGATEPITVKFANNPSQKTNQAI---LSQLYQ----SPNRRYPGPL 259
Score = 130 (50.8 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 130 NGLRLQTKTIKVSY 143
Score = 124 (48.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 367 NGYRLGDRVLQVSF 380
Score = 99 (39.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 216 NGQKPPGATEPITVKFAN 233
Score = 74 (31.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +
Sbjct: 333 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 384
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 145 (56.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 214 GLNGQKPPGATEPITVKFANNPSQKTNQAI---LSQLYQ----SPNRRYPGPL 259
Score = 130 (50.8 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 130 NGLRLQTKTIKVSY 143
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 175 DGSQIGGRTVKV 186
+G ++G R ++V
Sbjct: 368 NGYRLGDRVLQV 379
Score = 99 (39.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 216 NGQKPPGATEPITVKFAN 233
Score = 75 (31.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
+ KVI + T + +GFGFVT ++ A+ ++NG + R L++ N+
Sbjct: 334 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVFKTNK 384
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 49/162 (30%), Positives = 78/162 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L +G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE A+
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAV-C 67
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 68 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 116
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
D F+ + + +V+ + +G+ RGF FVTF+ + + +D
Sbjct: 117 DYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVD 158
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 32/98 (32%), Positives = 48/98 (48%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+ G L + T LR+ F+ L V+ + T RSRGFGFVT+ E++ +A+ A
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCA 68
Query: 277 MNGVEVEGRPLRLNMANERAPPVLPAAKETKTENSIDG 314
+V+GR + A R V P A T + + G
Sbjct: 69 RPH-KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGG 105
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 137 (53.3 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F+ G V SA+++ D+V S G+GFV + ++A+ AI
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV+F
Sbjct: 82 NGLRLQSKTIKVSF 95
Score = 125 (49.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL L ++F G V + +++ D T++ +GFGFVTM + EEA AI
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 175 DGSQIGGRTVKVNF 188
+G ++G +T++V+F
Sbjct: 306 NGYRLGDKTLQVSF 319
Score = 122 (48.0 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+ LP +MT + ++F G + ++ ++ D+ T SRG F+ EA+EAI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAM 200
F+G + G + + V F P + A+
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQSKNMAL 195
Score = 87 (35.7 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + + D F +++++V+ ++ TG SRG F+ F+ + + A+ +
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 278 NGVEVEG--RPLRLNMA 292
NG + G P+ + A
Sbjct: 168 NGHKPPGSSEPITVKFA 184
Score = 81 (33.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ NLG L F + + KVI + T + +GFGFVT E+ A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 278 NGVEVEGRPLRLNMANERA 296
NG + + L+++ ++
Sbjct: 306 NGYRLGDKTLQVSFKTSKS 324
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 183 (69.5 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 55/188 (29%), Positives = 89/188 (47%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL Y + L + +AG V A+++ S+G G V + E+A+ A+
Sbjct: 112 RVYVGNLSYDVKWHHLKDFMRQAGDVIFADVLL-LPNGMSKGCGIVEYATREQAQNAVNT 170
Query: 174 FDGSQIGGRTVKVNF---PEVPR--GG-ERAAMGPKLQNSYQGFVDSP----HKIYAGNL 223
+ R V V PE PR GG R G + + G+ P ++Y NL
Sbjct: 171 LSNQNLMNRLVYVREDREPE-PRFSGGPSRGDFGGPGRGGFGGYGGGPGGGGRQLYVSNL 229
Query: 224 GWGLTSQGLRDAFQ--GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVE 281
+ + Q L+D F+ Q G + + +GR +G G V FE+ +D ++A+ NG +
Sbjct: 230 PFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNAIQQFNGYD 289
Query: 282 VEGRPLRL 289
+GR L +
Sbjct: 290 WQGRTLEV 297
Score = 130 (50.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NLP+S + L ++F+ G V AEI Y+ RSRG G V + + A+ +I F
Sbjct: 383 IYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEP-NGRSRGTGVVQFDNADTAETSIAKF 441
Query: 175 DGSQIGGRTVKVNF 188
G Q GGR + + F
Sbjct: 442 TGYQYGGRPLGITF 455
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 181 (68.8 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 49/156 (31%), Positives = 79/156 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG + + T+ + A F + G V + I+ DR+T RGFGFVT A++ +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE- 125
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ I R V + +PRG + + V KI+ G L L L+
Sbjct: 126 -EDHVIDDRKVDLK-RTLPRGDKDTDIKA---------VSKTRKIFVGGLPPLLEEDELK 174
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+ F ++ +++++ +TGRSRGFGFVTF+T ED
Sbjct: 175 NYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQT-ED 209
Score = 139 (54.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 42/123 (34%), Positives = 64/123 (52%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP + L F G + +I+YD T RSRGFGFVT E++ + RL
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF-QTEDSVD--RL 214
Query: 174 F-DGS--QIGGRTVKVNFPEVPRGGE----RA--AMGPKLQ-NSYQGFVDSPHKIYAGNL 223
F DG ++G + V++ E R G R+ A G Q +SY G + + +Y+G
Sbjct: 215 FSDGKVHELGDKQVEIKRAEPKRTGRDNSFRSYGASGKYDQEDSYSGKANEDYSMYSGYG 274
Query: 224 GWG 226
G+G
Sbjct: 275 GYG 277
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 184 (69.8 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 48/182 (26%), Positives = 92/182 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V L +TS L + F +AG V A+IV D+++ RS+G +V + + AI L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL- 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
G ++ G V V E + +A +L + + H++ N+ + LT + ++
Sbjct: 301 SGKRLLGLPVIVQLTEAEKN-RKAREAAELARAASAEIPF-HRLCVSNIHFNLTDEDVKA 358
Query: 235 AFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
F+ P G + + RS+GFG++ + ++AL+ MNG ++ GR +R+ + N
Sbjct: 359 IFE--PFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGN 416
Query: 294 ER 295
++
Sbjct: 417 DK 418
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 178 (67.7 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 47/173 (27%), Positives = 85/173 (49%)
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
+++ S+ E E A+ V +S+G+ F+ S E+AKEA+ + +I GR
Sbjct: 117 NLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 176
Query: 183 TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
+++ + PRG A P ++ L T + L+++F G
Sbjct: 177 AIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTTEETLKESFDGS--- 220
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ A+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A +
Sbjct: 221 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 273
Score = 149 (57.5 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 49/198 (24%), Positives = 92/198 (46%)
Query: 120 LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179
LPY +T L EVF +A AEI +S+G ++ + +A++ G++I
Sbjct: 1 LPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 55
Query: 180 GGRTVKVNFP------EVPRGGERAAMGPKLQNSYQG--FVDSPHK-----------IYA 220
GR++ + + + RGG+ + + + Q +V + + +
Sbjct: 56 DGRSISLYYTGEKGQNQDYRGGKNSTWSDDSRKTDQSSAYVRTTSRTLQHVLGESKTLVL 115
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL + T + L++ F+ + KV + G+S+G+ F+ F + ED + AL++ N
Sbjct: 116 SNLSYSATEETLQEVFEKATFI---KVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKR 171
Query: 281 EVEGRPLRLNMANERAPP 298
E+EGR +RL + R P
Sbjct: 172 EIEGRAIRLELQGPRGSP 189
Score = 116 (45.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L + NL YS T +L EVF +A + V +S+G+ F+ S E+AKEA+
Sbjct: 113 LVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSC 168
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGP 202
+ +I GR +++ + PRG A P
Sbjct: 169 NKREIEGRAIRLEL-QGPRGSPNARSQP 195
Score = 37 (18.1 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 302 AAKETKTENSIDGSEL 317
AAKE + IDG+++
Sbjct: 250 AAKEAMEDGEIDGNKV 265
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 171 (65.3 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 54/184 (29%), Positives = 87/184 (47%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA Q ++ + KI+ G + LR
Sbjct: 68 RP-HKVNGRVVE------PK---RAVSREDSQRP-DAYL-TVKKIFVGGIKEDTEEHHLR 115
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQS-ALDAMNGVEVEGRPLRLNM 291
D F GQ G +++ +R +G+ RGF FVTF+ + + + + V +R
Sbjct: 116 DYF-GQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAP 174
Query: 292 ANER 295
+N+R
Sbjct: 175 SNQR 178
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 182 (69.1 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 46/184 (25%), Positives = 85/184 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +++ L F + G V+ A+++ D T +S+G+GFV+ + + A+ AI
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G IG R V+ N+ + E + + +Y GN+ T LRD
Sbjct: 287 NGKWIGKRAVRTNWA-ARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRD 345
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F + ++ +++ + FV +E E A+ MNG E+ G +R +
Sbjct: 346 LFSTYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGRT 399
Query: 295 RAPP 298
+A P
Sbjct: 400 QAVP 403
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 175 (66.7 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
+G + GR ++V + GG+R G + ++ G+
Sbjct: 67 MNGKSVDGRQIRV---DQAGGGDRGYGGNRFESRSGGY 101
Score = 153 (58.9 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMA 292
MNG V+GR +R++ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 183 (69.5 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 48/173 (27%), Positives = 87/173 (50%)
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
+++ S+ E E A+ V +S+G+ F+ S E+AKEA+ + +I GR
Sbjct: 349 NLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGR 408
Query: 183 TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
T+++ + PRG A P ++ L T + L+++F+G
Sbjct: 409 TIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTTEETLKESFEGS--- 452
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ A+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A +
Sbjct: 453 VRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDWAKPK 505
Score = 173 (66.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 53/188 (28%), Positives = 93/188 (49%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 249 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 303
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + NL + T +
Sbjct: 304 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTLVLSNLSYSATEE 357
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L++ F+ + KV + G+S+G+ F+ F + ED + AL++ N +E+EGR +RL
Sbjct: 358 TLQEVFEKATFI---KVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 413
Query: 291 MANERAPP 298
+ R P
Sbjct: 414 LQGPRGSP 421
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 184 (69.8 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 48/173 (27%), Positives = 87/173 (50%)
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
+++ S+ E E A+ V +S+G+ F+ S E+AKEA+ + +I GR
Sbjct: 492 NLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGR 551
Query: 183 TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
T+++ + PRG A P ++ L T + L+++F+G
Sbjct: 552 TIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTTEETLKESFEGS--- 595
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ A+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A +
Sbjct: 596 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 172 (65.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 52/188 (27%), Positives = 93/188 (49%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI +S+G ++ S +A++
Sbjct: 392 AARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKN 446
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + NL + T +
Sbjct: 447 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTLVLSNLSYSATEE 500
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L++ F+ + KV + G+S+G+ F+ F + ED + AL++ N +E+EGR +RL
Sbjct: 501 TLQEVFEKATFI---KVP-QNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 556
Query: 291 MANERAPP 298
+ R P
Sbjct: 557 LQGPRGSP 564
Score = 37 (18.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 302 AAKETKTENSIDGSEL 317
AAKE + IDG+++
Sbjct: 625 AAKEAMEDGEIDGNKV 640
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 163 (62.4 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 36/88 (40%), Positives = 49/88 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG++ Y T L +F+ AGTV S I+ D T RS+G G+V M + EEAKEAI
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAA 199
DG+ + R + V+ + R A
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRPA 89
Score = 114 (45.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++Y G++ + T LR F + S +I + TGRS+G G+V T E+ + A++
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 277 MNGVEVEGRPLRLNMANERAPPVLPAAKETK 307
++G + R + +++A + PA + K
Sbjct: 64 LDGALLRNRVITVSVARPQKQATRPAPRRGK 94
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 163 (62.4 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 36/88 (40%), Positives = 49/88 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG++ Y T L +F+ AGTV S I+ D T RS+G G+V M + EEAKEAI
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAA 199
DG+ + R + V+ + R A
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRPA 89
Score = 114 (45.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++Y G++ + T LR F + S +I + TGRS+G G+V T E+ + A++
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 277 MNGVEVEGRPLRLNMANERAPPVLPAAKETK 307
++G + R + +++A + PA + K
Sbjct: 64 LDGALLRNRVITVSVARPQKQATRPAPRRGK 94
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 181 (68.8 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 52/182 (28%), Positives = 91/182 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NL ++T LA +F + G V A+I+++ + D + FV +A A++
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP---YAFVEFSDHNQATLALQSH 98
Query: 175 DGSQIGGRTVKVNFPEVPRG-GERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G ++ + + V + PR GE + P+ + FV G+L + S LR
Sbjct: 99 NGRELLEKEMHVTWAFEPREPGENRSK-PETSRHFHVFV--------GDLCSEIDSTKLR 149
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
+AF + AK+I + T + +G+GFV++ ED + A+D MNG + R +R N A
Sbjct: 150 EAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWAT 209
Query: 294 ER 295
+
Sbjct: 210 RK 211
Score = 158 (60.7 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 51/190 (26%), Positives = 88/190 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L + S+ L E F + G V+ A+I+ D T++ +G+GFV+ E+A+ AI
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 175 DGSQIGGRTVKVNF----PEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+G+ +G RT++ N+ P+ RGG+R + + K Y
Sbjct: 194 NGAWLGRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAA 253
Query: 229 SQGLRDAFQGQPGLLSAKVI---FERY-------TGRSRGFGFVTFETAEDLQSALDAMN 278
+ G L I F+R+ T + +G+ FV FET E A+ MN
Sbjct: 254 DN--TSVYVGNIANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMN 311
Query: 279 GVEVEGRPLR 288
++ G+ +R
Sbjct: 312 NADIGGQIVR 321
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 177 (67.4 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 58/176 (32%), Positives = 84/176 (47%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ RLY+GNLP ++T + E F+ GT EI GFGF+ +A++ +
Sbjct: 6 STRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKL------MNGFGFIEYEDAMDARDIV 59
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL--TS 229
F GS G + V F PR E + N + P + + GL TS
Sbjct: 60 PAFHGSDFKGERLTVQFARGPRRKENFPVPTDRPN-----LPRPRRTIFRMIISGLPETS 114
Query: 230 -QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284
Q L+D F Q GL V++ TGR G G V FETA DL++A++ ++G E +G
Sbjct: 115 WQDLKD-FARQSGL---DVVYSE-TGREPGRGIVEFETANDLKTAVEKLDGREFKG 165
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 180 (68.4 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 48/185 (25%), Positives = 87/185 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q + V+ SP +Y G + GLT
Sbjct: 177 GGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTE 236
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
+R F ++ +V E+ G+ F+ F + E A+ ++NG +EG ++
Sbjct: 237 HLMRQTFSPFGQIMEIRVFPEK------GYSFIRFSSHESAAHAIVSVNGTTIEGHVVKC 290
Query: 290 NMANE 294
E
Sbjct: 291 YWGKE 295
Score = 171 (65.3 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 61/226 (26%), Positives = 106/226 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSR-------GFG---------- 157
LYVGNL +T + + ++F + G S +++ ++ +D SR GF
Sbjct: 10 LYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQ-SDSSRKMNSSSIGFSVLQHTSNDPY 68
Query: 158 -FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
FV +A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 69 CFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV---- 119
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
G+L +T+ +R AF + A+V+ + TG+S+G+GFV+F D ++A+
Sbjct: 120 ----GDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVH 175
Query: 277 MNGVEVEGRPLRLNMANERAPPVLPAAKETKTENSIDGSELLSSIS 322
M G + GR +R N A R PP P + + + + E+++ S
Sbjct: 176 MGGQWLGGRQIRTNWAT-RKPPA-PKSVQDNSAKQLRFDEVVNQSS 219
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 147 (56.8 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 197 GLNGQKPSGATEPITVKFANNPSQKTSQAL---LSQLYQ----SPNRRYPGPL 242
Score = 126 (49.4 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 113 NGLRLQTKTIKVSY 126
Score = 122 (48.0 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 350 NGYRLGDRVLQVSF 363
Score = 100 (40.3 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 199 NGQKPSGATEPITVKFAN 216
Score = 74 (31.1 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +
Sbjct: 316 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 367
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 180 (68.4 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 55/190 (28%), Positives = 92/190 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT------MGSVEEA 167
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +G+V +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 168 KEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ DG I + T + PE R E GP+ NS +KI+ G +
Sbjct: 61 RP--HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS------KSNKIFVGGIPH 112
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
LR+ F+ + +I++ R RGFGF+TFE + + A++ M+ ++ G+
Sbjct: 113 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 171
Query: 286 PLRLNMANER 295
+ + A R
Sbjct: 172 KVEVKRAEPR 181
Score = 121 (47.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 164 HF-HDIMGKKVEVKRAE-PRDSKSQAPG 189
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 180 (68.4 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 50/184 (27%), Positives = 86/184 (46%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 59
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ GR + P PRG + PK Q + + +KI+ G +
Sbjct: 60 SRPHTLDGRNIDPK-PCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETE 118
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
LR+ F+ + +I++ R RGFGF+TFE + + A++ M+ ++ G+ + +
Sbjct: 119 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 177
Query: 292 ANER 295
A R
Sbjct: 178 AEPR 181
Score = 124 (48.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGP 202
I G+ V+V E PR + GP
Sbjct: 164 HF-HDIMGKKVEVKRAE-PRDSKSQTPGP 190
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 143 (55.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 39/113 (34%), Positives = 58/113 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 174 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G + V F P A+ L YQ SP++ Y G L
Sbjct: 234 GLNGQKPSGAAEPITVKFANNPSQKTSQAL---LSQLYQ----SPNRRYPGPL 279
Score = 126 (49.4 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 90 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 149
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 150 NGLRLQTKTIKVSY 163
Score = 122 (48.0 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 387 NGYRLGDRVLQVSF 400
Score = 101 (40.6 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 278 NGVEVEG--RPLRLNMAN 293
NG + G P+ + AN
Sbjct: 236 NGQKPSGAAEPITVKFAN 253
Score = 74 (31.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ KVI + T + +GFGFVT ++ A+ ++NG + R L+++ +
Sbjct: 353 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 404
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 180 (68.4 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 55/190 (28%), Positives = 92/190 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT------MGSVEEA 167
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +G+V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 KEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ DG I + T + PE R E GP+ NS +KI+ G +
Sbjct: 71 RP--HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS------KSNKIFVGGIPH 122
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
LR+ F+ + +I++ R RGFGF+TFE + + A++ M+ ++ G+
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 181
Query: 286 PLRLNMANER 295
+ + A R
Sbjct: 182 KVEVKRAEPR 191
Score = 121 (47.7 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 174 HF-HDIMGKKVEVKRAE-PRDSKSQAPG 199
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 180 (68.4 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 55/190 (28%), Positives = 92/190 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT------MGSVEEA 167
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +G+V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 KEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ DG I + T + PE R E GP+ NS +KI+ G +
Sbjct: 71 RP--HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS------KSNKIFVGGIPH 122
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
LR+ F+ + +I++ R RGFGF+TFE + + A++ M+ ++ G+
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 181
Query: 286 PLRLNMANER 295
+ + A R
Sbjct: 182 KVEVKRAEPR 191
Score = 121 (47.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 174 HF-HDIMGKKVEVKRAE-PRDSKSQAPG 199
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 180 (68.4 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 55/190 (28%), Positives = 92/190 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT------MGSVEEA 167
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +G+V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 KEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ DG I + T + PE R E GP+ NS +KI+ G +
Sbjct: 71 RP--HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS------KSNKIFVGGIPH 122
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
LR+ F+ + +I++ R RGFGF+TFE + + A++ M+ ++ G+
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 181
Query: 286 PLRLNMANER 295
+ + A R
Sbjct: 182 KVEVKRAEPR 191
Score = 121 (47.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 174 HF-HDIMGKKVEVKRAE-PRDSKSQAPG 199
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 183 (69.5 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 48/173 (27%), Positives = 87/173 (50%)
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
+++ S+ E E A+ V +S+G+ F+ S E+AKEA+ + +I GR
Sbjct: 495 NLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGR 554
Query: 183 TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
T+++ + PRG A P ++ L T + L+++F+G
Sbjct: 555 TIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTTEETLKESFEGS--- 598
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ A+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A +
Sbjct: 599 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 651
Score = 173 (66.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 53/188 (28%), Positives = 93/188 (49%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 395 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 449
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + NL + T +
Sbjct: 450 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTLVLSNLSYSATEE 503
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L++ F+ + KV + G+S+G+ F+ F + ED + AL++ N +E+EGR +RL
Sbjct: 504 TLQEVFEKATFI---KVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 559
Query: 291 MANERAPP 298
+ R P
Sbjct: 560 LQGPRGSP 567
Score = 37 (18.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 302 AAKETKTENSIDGSEL 317
AAKE + IDG+++
Sbjct: 628 AAKEAMEDGEIDGNKV 643
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 183 (69.5 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 48/173 (27%), Positives = 87/173 (50%)
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
+++ S+ E E A+ V +S+G+ F+ S E+AKEA+ + +I GR
Sbjct: 496 NLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGR 555
Query: 183 TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
T+++ + PRG A P ++ L T + L+++F+G
Sbjct: 556 TIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTTEETLKESFEGS--- 599
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ A+++ +R TG S+GFGFV F + ED ++A +AM E++G + L+ A +
Sbjct: 600 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 652
Score = 173 (66.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 53/188 (28%), Positives = 93/188 (49%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 396 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 450
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + NL + T +
Sbjct: 451 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTLVLSNLSYSATEE 504
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L++ F+ + KV + G+S+G+ F+ F + ED + AL++ N +E+EGR +RL
Sbjct: 505 TLQEVFEKATFI---KVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 560
Query: 291 MANERAPP 298
+ R P
Sbjct: 561 LQGPRGSP 568
Score = 37 (18.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 302 AAKETKTENSIDGSEL 317
AAKE + IDG+++
Sbjct: 629 AAKEAMEDGEIDGNKV 644
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 162 (62.1 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 154 (59.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNGVEVEGRPLRLNMANE 294
MNG V+GR +R++ A +
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
WARNING: HSPs involving 1044 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 323 265 0.00093 114 3 11 22 0.37 34
32 0.50 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1294
No. of states in DFA: 586 (62 KB)
Total size of DFA: 156 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 19.92u 0.08s 20.00t Elapsed: 00:00:05
Total cpu time: 19.99u 0.08s 20.07t Elapsed: 00:00:06
Start: Fri May 10 00:01:22 2013 End: Fri May 10 00:01:28 2013
WARNINGS ISSUED: 2