BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020607
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 318 bits (814), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 148/200 (74%), Positives = 169/200 (84%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAIRL
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
FDGSQ+GGRTVKVNFPEVPRGGER M K++++YQGFVDSPHK+Y NL W LTSQGLR
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293
DAF QPG +SAKVI++R +GRSRGFGF+TF +AE + SALD MN VE+EGRPLRLN+A
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAG 294
Query: 294 ERAPPVLPAAKETKTENSID 313
++AP P ET EN D
Sbjct: 295 QKAPVSSPPVVETSPENDSD 314
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 171 bits (432), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 142/221 (64%), Gaps = 20/221 (9%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
++ E+ VE E+P+ + E +L+VGNLP+S+ S++LA +F AG V E++YD++T
Sbjct: 69 DQLEDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTG 125
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAM 200
RSRGFGFVTM + EE + A + F+G +I GR ++VN P RGG +
Sbjct: 126 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 185
Query: 201 GPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 254
G + NS G VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +G
Sbjct: 186 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 245
Query: 255 RSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
RSRGFGFVT+ +++++ A+D++NGV+++GR +R++ A ER
Sbjct: 246 RSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 142/221 (64%), Gaps = 20/221 (9%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
++ E+ VE E+P+ + E +L+VGNLP+S+ S++LA +F AG V E++YD+++
Sbjct: 70 DQLEDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG 126
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAM 200
RSRGFGFVTM + EE + A + F+G +I GR ++VN P RGG +
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 186
Query: 201 GPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 254
G + NS G VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +G
Sbjct: 187 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 246
Query: 255 RSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
RSRGFGFVT+ +A+++ A+D++NG++++GR +R++ A ER
Sbjct: 247 RSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 120/185 (64%), Gaps = 11/185 (5%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGNLPY + S LA +F +AG V AE++Y+R TD+SRGFGFVTM +VEEA++A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+++ + GR + VN + R GER P+ + SY +IY GN+ WG+
Sbjct: 196 MYNRYDVNGRLLTVN--KAARRGERPERPPRTFEQSY--------RIYVGNIPWGIDDAR 245
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L F ++SA+V+++R TGRSRGFGFVT + ++ A+ ++G ++GR +R+N+
Sbjct: 246 LEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNV 305
Query: 292 ANERA 296
A +R+
Sbjct: 306 AEDRS 310
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 118/187 (63%), Gaps = 9/187 (4%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ F+ + GR + VN PRG R P++ + ++Y GNL W + +
Sbjct: 208 VEKFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV-------YEPAFRVYVGNLPWDVDNG 258
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
L F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G +EGR +R+N
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Query: 291 MANERAP 297
+A ER P
Sbjct: 319 VAEERPP 325
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 121/198 (61%), Gaps = 16/198 (8%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
EE +EP E A+L+VGNLPY + S LA++F +AG V AE++Y+R TDRSRGFGF
Sbjct: 88 EEYQEPS-----EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGF 142
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHK 217
VTM +VEEA +A+ L+ + GR + VN PRG R P+ Q +Y +
Sbjct: 143 VTMSTVEEADKAVELYSQYDLNGRLLTVN-KAAPRGS-RPERAPRTFQPTY--------R 192
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
IY GN+ W + L F ++SA+V+F+R +GRSRGFGFVT + ++ A+ +
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252
Query: 278 NGVEVEGRPLRLNMANER 295
+G ++GR +R+N A ER
Sbjct: 253 DGQTLDGRTIRVNAAEER 270
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 135/211 (63%), Gaps = 11/211 (5%)
Query: 89 QEEEEEEEAVEEEEE--PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E+ ++ VEEE P + +++VGNLP+S S++LAE+F AG V E++Y
Sbjct: 68 EDVEDGDDGVEEERNFSPDL-------KIFVGNLPFSADSAALAELFERAGNVEMVEVIY 120
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN 206
D++T RSRGFGFVTM S EE + A + F+G ++ GR ++VN P +R + +
Sbjct: 121 DKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE--KRENSSFRGGS 178
Query: 207 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
G DS +++Y GNL WG+ L F Q ++ AKV+++R +GRSRGFGFVT+ +
Sbjct: 179 RGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 238
Query: 267 AEDLQSALDAMNGVEVEGRPLRLNMANERAP 297
AE++ +A+++++GV++ GR +R++ A R P
Sbjct: 239 AEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 134/218 (61%), Gaps = 10/218 (4%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E EE+ + PK + +L+VGNLP+++ S+ LA++F AG V E++YD++
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK----- 203
T RSRGFGFVTM SV E + A + F+G ++ GR ++VN P P+ + + GP+
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 187
Query: 204 ----LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
S +++Y GNL WG+ L F Q ++ A+VI++R +GRS+GF
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247
Query: 260 GFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 297
GFVT+++++++Q+A+ +++G +++GR +R++ A R P
Sbjct: 248 GFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 118/186 (63%), Gaps = 11/186 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGG-ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+ L +G + GR + VN PRG ERA +G + ++Y GNL W + +
Sbjct: 113 VELLNGYDMDGRQLTVN-KAAPRGSPERAP---------RGDFEPSCRVYVGNLPWDVDT 162
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
L F ++SA+V+ +R TGRSRGFGFVT + ++ A+ A++G ++GR +R+
Sbjct: 163 SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
Query: 290 NMANER 295
N+A ER
Sbjct: 223 NVAEER 228
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 209 QGFVDSPH--KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
QGF + P K++ GNL + + S+ L F + A+VI+ R T RSRGFGFVT T
Sbjct: 46 QGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMST 105
Query: 267 AEDLQSALDAMNGVEVEGRPLRLNMANERAPP 298
E+ + A++ +NG +++GR L +N A R P
Sbjct: 106 VEEAEKAVELLNGYDMDGRQLTVNKAAPRGSP 137
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 122/188 (64%), Gaps = 4/188 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNL +S S++LAE+F AG V E++YD++T RSRGFGFVTM S EE + A +
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 174 FDGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
F+G ++ GR ++VN P E R + + G DS +++Y GNL WG+
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 207
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
L F Q ++ AKV+++R +GRSRGFGFVT+ +AE++ +A+++++GV++ GR +R+
Sbjct: 208 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
Query: 290 NMANERAP 297
+ A R P
Sbjct: 268 SPAEARPP 275
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A RLYVGN+P ++ + L + E G + AE++YD+ + RSR FGFVTM +VE+A I
Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVI 142
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ ++IGGR +KVN E P G A Q FV+SP+K+Y GNL +T++
Sbjct: 143 EKLNDTEIGGRKIKVNITEKPLEGMDIAT---TQAEDSQFVESPYKVYIGNLAKTVTNEL 199
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291
L+D F + +L AKV T +S GFGFV+F + E++++A+ A+N +EG+ +R+N
Sbjct: 200 LKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259
Query: 292 A 292
A
Sbjct: 260 A 260
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 29/225 (12%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 93 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 149
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 150 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 196
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
TG SRG+GFV+F + +D Q+A+D+M G ++ GRPLR+N A +R
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
++E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A+
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSKPAGN--------NDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284
+ + + F ++S ++ T + +GFG+V F ED + ALDA+ G ++
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDN 335
Query: 285 RPLRLNMANER 295
RP+RL+ ++ R
Sbjct: 336 RPVRLDFSSPR 346
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 14/191 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D T RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR + V + + R GE +++ N YQG +Y NL
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284
G+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG V
Sbjct: 303 DGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 285 RPLRLNMANER 295
+PL + +A +
Sbjct: 361 KPLYVALAQRK 371
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + TGRSRGFGFV + E+ Q A+ MNG EV GR + + A +
Sbjct: 210 IFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
D F +LS KV+ + + SRG+GFV FET E A+ MNG+ + R
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F ++S +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAP 297
N ++GRP+R+ M ++R P
Sbjct: 73 NFEVIKGRPIRI-MWSQRDP 91
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR V V + + R GE +++ N YQG +Y NL
Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284
G+ LR F + S KV+ E G S+GFGFV F + E+ A+ MNG V
Sbjct: 303 DGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 285 RPLRLNMANER 295
+PL + +A +
Sbjct: 361 KPLYVALAQRK 371
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG EV GR + + A +
Sbjct: 210 IFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268
Query: 295 R 295
R
Sbjct: 269 R 269
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
D F +LS KV+ + Y SRG+GFV FET E A+ MNG+ + R
Sbjct: 116 YDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F ++S +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAP 297
N ++GRP+R+ M ++R P
Sbjct: 73 NFEVIKGRPIRI-MWSQRDP 91
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 112/213 (52%), Gaps = 18/213 (8%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++ + L++G+L M + + VFA++G SA+++ +++T +S G+GF+ S
Sbjct: 54 GSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSV 113
Query: 167 AKEAIRLFDGSQIGG--RTVKVNFPEVPRGGER-AAMGPKLQNSYQGFVDSPHKIYAGNL 223
A+ ++ ++G+ + +T ++N+ + G +R GP H I+ G+L
Sbjct: 114 AERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPD------------HTIFVGDL 161
Query: 224 GWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV 282
+T L D F+ G + AKV+ +R TGRS+G+GFV F + A+ MNG
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC 221
Query: 283 EGRPLRLN-MANERAPPVLPAA-KETKTENSID 313
RP+R+ AN+ A P+ PA + T+ N+ D
Sbjct: 222 STRPMRIGPAANKNALPMQPAMYQNTQGANAGD 254
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L++ F G+V A++V DR T RS+G+GFV E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERA-AMGPKLQNSYQGFV---DSPHK--IYAGNLGWGL 227
+G R +++ P + A M P + + QG + P+ I+ G L +
Sbjct: 216 MNGQYCSTRPMRIG----PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 228 TSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
T L+ F GQ G LL K+ + GFV + + AL +NG ++ G+
Sbjct: 272 TDDELKSIF-GQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGTQLGGQS 324
Query: 287 LRLNMANERAP 297
+RL+ R+P
Sbjct: 325 IRLSWG--RSP 333
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L ++T L +F + G E+++ ++ R GFV + A+ A+ +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFG-----ELLHVKIPPGKR-CGFVQYANKASAEHALSVL 315
Query: 175 DGSQIGGRTVKVNFPEVP---------RGGERAAMGPKLQNSYQGFVDSP 215
+G+Q+GG+++++++ P GG P+ Q Y G+ P
Sbjct: 316 NGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGY-GYAAQP 364
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
++E K E+ L V NL Y+ + +L E+F +A ++ + R +G+ FV
Sbjct: 448 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFV 503
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHK 217
+ E+AKEA+ + ++I GR +++ F P +G N+ GF
Sbjct: 504 EFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN---------MNARGGFNQQSKT 554
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ L T + LR++F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 555 LFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 278 NGVEVEGRPLRLNMA 292
E++G + L+ A
Sbjct: 612 EDGEIDGNKVTLDFA 626
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR + V + + R E +++ N YQG +Y NL
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284
G+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG V
Sbjct: 303 DGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 285 RPLRLNMANER 295
+PL + +A +
Sbjct: 361 KPLYVALAQRK 371
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 16/233 (6%)
Query: 66 RQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVE---EEEEPKVAASDEAARLYVGNLPY 122
R S ++ FQ D++ +T E + + + +P + S +++ NL
Sbjct: 50 RSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSG-VGNVFIKNLDE 108
Query: 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182
S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+ +G + R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Query: 183 TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL 242
V V + R E Y V +Y N G + + LR+ F
Sbjct: 167 KVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 243 LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
LS KV+ + +GRSRGFGFV + E+ Q A+ MNG EV GR + + A +R
Sbjct: 218 LSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS + ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
D F +LS KV+ + + SRG+GFV FET E A+ MNG+ + R
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F ++S +V + T RS + ++ F+ D + ALD M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAP 297
N ++GRP+R+ M ++R P
Sbjct: 73 NFEVIKGRPIRI-MWSQRDP 91
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+DE L++G+L Y M + L FA G + SA+++ ++ T + G+GF+ S A+
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 169 EAIRLFDGSQIGG---RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLG 224
++ F+ + I + ++N+ + G +R DSP + I+ G+L
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD--------------DSPDYTIFVGDLA 163
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283
+T L + F+ P + AKV+ +R TGR++G+GFV F + A+ MNGV
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCS 223
Query: 284 GRPLRLNMANER 295
RP+R+ A +
Sbjct: 224 TRPMRIGPAASK 235
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DRVT R++G+GFV E A+
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFV--DSPHK--IYAGNLGWGL 227
+G R +++ P ++ G + Q+S G + P+ ++ G L +
Sbjct: 217 MNGVPCSTRPMRIG----PAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASV 272
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
T L++ F ++ K+ + GFV F + AL +NGV++ G +
Sbjct: 273 TDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 288 RLNMANERAP 297
RL+ R+P
Sbjct: 327 RLSWG--RSP 334
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+AA P +Q + D ++ G+L + + L F ++SAKVI + TG+
Sbjct: 46 QAAAPPSVQPTT---ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQV 102
Query: 257 RGFGFVTFETAEDLQSALDAMNGVEVEGRP---LRLNMAN 293
G+GF+ F + + L N + P RLN A+
Sbjct: 103 EGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWAS 142
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
Q P+ Q ++ ++ + + D+ L+VG+L + M + L F+ G V+S
Sbjct: 77 QHHPQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSS 136
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAA 199
+++ +++T +S G+GFV S A+E ++ + GS + + ++N+ G +RA
Sbjct: 137 VKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAV 196
Query: 200 -MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSR 257
GP L ++ G+L +T L + F + P + SAKV+ + TGRS+
Sbjct: 197 ENGPDL------------SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSK 244
Query: 258 GFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
G+GFV F + AL MNG R +R+ +A
Sbjct: 245 GYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 34/204 (16%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F++ +V SA++V D T RS+G+GFV G E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG-- 231
+G+ R ++V R A+ + Q+S Q + + G++G+G S G
Sbjct: 264 MNGAYCSNRQMRVGIATPKR-----AIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES 318
Query: 232 ------------------LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
LR F ++S K+ +G GFV F + + A
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDA 372
Query: 274 LDAMNGVEVEGRPLRLNMANERAP 297
++++NG + +RL+ R+P
Sbjct: 373 IESLNGTVIGKNTVRLSWG--RSP 394
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++VG + + L + F++ G V S +I +G GFV + A++AI
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAIE 374
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G+ IG TV++++ P R G + Y
Sbjct: 375 SLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWNGGY 410
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAK 537
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 538 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 584
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM E++G +
Sbjct: 585 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 641
Query: 289 LNMANER 295
L+ A +
Sbjct: 642 LDWAKPK 648
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI +S+G ++ S +A++
Sbjct: 392 AARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKN 446
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + NL + T +
Sbjct: 447 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSG---ESKTLVLSNLSYSATEE 500
Query: 231 GLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N +E+EGR
Sbjct: 501 TLQEVFE--------KATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 552
Query: 287 LRLNMANERAPP 298
+RL + R P
Sbjct: 553 IRLELQGPRGSP 564
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 31/203 (15%)
Query: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAA--RLYVGNLPYSMTSSSLAEVFAEAGTVASA 142
P ++E +++ V E ++ KV S+ L++GNL + + + L +E A
Sbjct: 278 PGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEP--FAKN 335
Query: 143 EI-VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMG 201
++ V D T +R FG+V S E+ ++A+ L G ++ G +K+ E P+G
Sbjct: 336 DLAVVDVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKG------- 384
Query: 202 PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261
++S + V + + A NL + +T L++ F+ L +++ + G+S+G +
Sbjct: 385 ---RDSKK--VRAARTLLAKNLSFNITEDELKEVFED---ALEIRLVSQ--DGKSKGIAY 434
Query: 262 VTFETAEDLQSALDAMNGVEVEG 284
+ F++ D + L+ E +G
Sbjct: 435 IEFKSEADAEKNLE-----EKQG 452
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY-----------TGRSRGFGFV 262
+P ++ GNL + L+ A I E + TG +R FG+V
Sbjct: 306 TPFNLFIGNLNPNKSVAELKVA------------ISEPFAKNDLAVVDVRTGTNRKFGYV 353
Query: 263 TFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
FE+AEDL+ AL+ + G++V G ++L R
Sbjct: 354 DFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 385
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 54/211 (25%)
Query: 118 GNLPYSMT-------------------------------SSSLAEV-FAEAGTVASAEI- 144
G MT + S+AE+ A + A ++
Sbjct: 279 GKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLA 338
Query: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKL 204
V D T +R FG+V S E+ ++A+ L G ++ G +K+ E P+G
Sbjct: 339 VVDVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKG---------- 384
Query: 205 QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
++S + V + + A NL + +T L++ F+ L +++ + G+S+G ++ F
Sbjct: 385 RDSKK--VRAARTLLAKNLSFNITEDELKEVFE---DALEIRLVSQ--DGKSKGIAYIEF 437
Query: 265 ETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
++ D + L+ G E++GR + L E+
Sbjct: 438 KSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 468
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 485 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAK 540
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 541 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 587
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM E++G +
Sbjct: 588 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 644
Query: 289 LNMANER 295
L+ A +
Sbjct: 645 LDWAKPK 651
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 24/192 (12%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 395 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 449
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + + NL + T +
Sbjct: 450 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSGESKT---LVLSNLSYSATEE 503
Query: 231 GLRDAFQGQPGLLSAKVIFERYT----GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N +E+EGR
Sbjct: 504 TLQEVFE--------KATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 555
Query: 287 LRLNMANERAPP 298
+RL + R P
Sbjct: 556 IRLELQGPRGSP 567
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 56/222 (25%)
Query: 104 PKVAASDEAAR--------------------------LYVGNLPYSMTSSSL----AEVF 133
P AA + + L++GNL + + + L +E+F
Sbjct: 276 PVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELF 335
Query: 134 AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
A+ A D T +R FG+V S E+ ++A+ L G ++ G +K+ E P+
Sbjct: 336 AKNDLAA-----VDVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPK 386
Query: 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT 253
G ++S + V + + A NL + +T L++ F+ + ++
Sbjct: 387 G----------RDSKK--VRAARTLLAKNLSFNITEDELKEVFED-----AVEIRLVSQD 429
Query: 254 GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
GRS+G ++ F++ D + L+ G E++GR + L E+
Sbjct: 430 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 471
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A ++ L + L E F+ G V ++ DR + RS+G +V V A
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I L G ++ G + V + + AAM LQ G P ++Y G+L + +T
Sbjct: 211 IGL-TGQRVLGVPIIVQASQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITED 264
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
LR F+ + S +++ + TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 291 MANER 295
ER
Sbjct: 325 HVTER 329
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A ++ L + L E F+ G V ++ DR + RS+G +V V A
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I L G ++ G + V + + AAM LQ G P ++Y G+L + +T
Sbjct: 211 IGL-TGQRVLGVPIIVQASQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITED 264
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
LR F+ + S +++ + TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 291 MANER 295
ER
Sbjct: 325 HVTER 329
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A ++ L + L E F+ G V ++ DR + RS+G +V V A
Sbjct: 151 DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLA 210
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I L G ++ G + V + + AAM LQ G P ++Y G+L + +T
Sbjct: 211 IGL-TGQRVLGVPIIVQASQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITED 264
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
LR F+ + S +++ + TGRS+G+GF+TF +E + AL+ +NG E+ GRP+++
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 291 MANER 295
ER
Sbjct: 325 HVTER 329
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 98/189 (51%), Gaps = 16/189 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y + + L F++ G + S +++ +++T + G+GF+ S A+
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 170 AIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+Q+ G T ++N+ G++ GP H I+ G+L +
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPD------------HSIFVGDLAPDV 127
Query: 228 TSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
T L++ F+ + AKV+ + TGRS+G+GFV F + A+ MNG+ RP
Sbjct: 128 TDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRP 187
Query: 287 LRLNMANER 295
+R++ A +
Sbjct: 188 MRISAATPK 196
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 174 FDGSQIGGRTVKVN--FPEVPRGGER----AAMGP-----KLQNSYQGFVDSPHK----- 217
+G R ++++ P+ G ++ A+ P + Q +V P
Sbjct: 178 MNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCT 237
Query: 218 -IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
I NL +T + L+ AF Q G +VI+ + ++G+G+V F+T + A+
Sbjct: 238 TISVANLDQNVTEEELKKAF-SQLG----EVIYVKIPA-TKGYGYVQFKTRPSAEEAVQR 291
Query: 277 MNGVEVEGRPLRLNMA 292
M G + + +R++ +
Sbjct: 292 MQGQVIGQQAVRISWS 307
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176
V NL ++T L + F++ G E++Y ++ ++G+G+V + A+EA++ G
Sbjct: 241 VANLDQNVTEEELKKAFSQLG-----EVIYVKIP-ATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 177 SQIGGRTVKVNFPEVP 192
IG + V++++ + P
Sbjct: 295 QVIGQQAVRISWSKNP 310
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 21/211 (9%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+TE + ++ E ++++E EE + V+AS LYVG+L S++ + L ++F+
Sbjct: 4 ITEKTAEQLENLSLQDKQEGTNEENQSETVSAS-----LYVGDLDPSVSEAHLYDIFSPI 58
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G V+S + D +T S G+ +V + AK AI + + I G+ ++ +
Sbjct: 59 GAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMW-------- 110
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+KV + TG+S
Sbjct: 111 -SQRDPSLRKKGAG------NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKS 162
Query: 257 RGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
+GFG+V FE E A+DA+NG+ + G+ +
Sbjct: 163 KGFGYVHFEEDESASEAIDALNGMLLNGQEI 193
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL + + +L + F+ G + S+++ D T +S+GFG+V E A EAI
Sbjct: 122 AGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAI 180
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + + ER + K + F + +Y N+ T +
Sbjct: 181 DALNGMLLNGQEIYVG-PHLSKK-ERES---KFEEMKANFTN----VYIKNINTETTDKE 231
Query: 232 LRDAFQGQPGLLSAK------VIFERY-TGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284
+ L AK V+ ER G ++GFGFV F ED ++ +N E +G
Sbjct: 232 FEE--------LVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKG 283
Query: 285 RPLRLNMANER 295
+PL +N A ++
Sbjct: 284 QPLYVNRAQKK 294
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
+Y+ N+ T E+ A+ G S +V +R + ++GFGFV + E+A + +
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGKTDS--VVLERTPEGENKGFGFVNFVNHEDAVKCVEE 275
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGL 227
+ ++ G+ + VN R ++ +L+ Y+ Y G NL +
Sbjct: 276 LNNTEFKGQPLYVN-----RAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSI 330
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N V G+PL
Sbjct: 331 DDKKLEEEFAPYGTITSAKVMTTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 389
Query: 288 RLNMANER 295
+ +A +
Sbjct: 390 YVAIAQRK 397
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L ++ L D F + S +V + T S G+ +V F + ++A++ +
Sbjct: 37 LYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKL 96
Query: 278 NGVEVEGRPLRLNMANERAP 297
N ++G+ R+ M ++R P
Sbjct: 97 NFTPIKGKLCRI-MWSQRDP 115
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 19/209 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++S++ +++G+L M S L F++AG V S +I+ ++ T +S +GFV +
Sbjct: 78 SSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAA 137
Query: 167 AKEAIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224
A++ ++ ++G+ + + ++N+ G +RA G S I+ G+L
Sbjct: 138 AEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETG------------SDFSIFVGDLA 185
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283
+T LRD F + P L AKV+ + TG S+G+GFV F + A+ MNGV
Sbjct: 186 SDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCS 245
Query: 284 GRPLRLNMANERAPPVLPAAKETKTENSI 312
R +R+ + A P P+A E + ++
Sbjct: 246 SRAMRIGV----ATPKKPSAHEQYSSQAV 270
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +T L + F + G V S +I +G GFV A+EAI+
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKI------PAGKGCGFVQFSDRSSAQEAIQKL 350
Query: 175 DGSQIGGRTVKVNFPEVPRGGE-RAAMGPKLQNSYQG 210
G+ IG + V++++ P + R G + Y G
Sbjct: 351 SGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNG 387
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 16/173 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S E+
Sbjct: 43 AHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDG 102
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++A+ + + I G+ ++ + + P L+ + QG ++ NL +
Sbjct: 103 EKALEELNYTVIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDHAI 147
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
++ L D F +LS KV + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHVNGM 199
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + +L + FA G + S ++ D + + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + K + F + IY N+ +T + R+
Sbjct: 197 NGMLLNEKKVFVGH-HIPKK-ERMS---KFEEMKANFTN----IYVKNIDLDVTDEDFRE 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F+ + SA + + G+SRGFGFV + E A+D +N +E +G+ L + A +
Sbjct: 248 LFEKHGDITSASIARDD-QGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQK 306
Query: 295 R 295
+
Sbjct: 307 K 307
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 68/241 (28%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+F + G + SA I D +SRGFGFV E A A+
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDD-QGKSRGFGFVNYIRHEAAAVAVDHL 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + + Q+ YQG +Y NL
Sbjct: 290 NDIEFKGQKLYVGRAQKKHEREEELRKQYEAARL--EKQSKYQGV-----NLYIKNLNDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ + LRD F + SAKVI
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQN 402
Query: 250 ---------------ERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
++ G+S+GFGFV F ++ A+ MN +EG+PL + +A
Sbjct: 403 GEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQR 462
Query: 295 R 295
+
Sbjct: 463 K 463
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMG--PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
DG+ G + N P AA G P + Q + +Y G L +T L
Sbjct: 13 DGADANGAQINTNVP--------AASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAML 64
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F + S +V + T RS G+ +V + ++ED + AL+ +N ++G+P R+ M
Sbjct: 65 FELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRI-MW 123
Query: 293 NERAP 297
++R P
Sbjct: 124 SQRDP 128
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 484 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 539
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 540 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 586
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM E++G +
Sbjct: 587 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 643
Query: 289 LNMANER 295
L+ A +
Sbjct: 644 LDWAKPK 650
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 34/198 (17%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI +S+G ++ + +A++
Sbjct: 393 DARTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKT 447
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDSP-----HKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 448 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 496
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ T + L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 497 YSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 548
Query: 281 EVEGRPLRLNMANERAPP 298
E+EGR +RL + R P
Sbjct: 549 EIEGRAIRLELQGPRGSP 566
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 50/229 (21%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTS----SSLAEVFAE 135
++ P ++E +++A E ++ KV ++ A L+VGNL ++ ++ + +++VFA+
Sbjct: 276 KEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAK 335
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 195
V D +R FG+V S E+ ++A+ L G ++ G +K+ E P+G
Sbjct: 336 NDLA-----VVDVRIGMTRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGK 386
Query: 196 ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL---------TSQGLRDAFQGQPGLLSAK 246
DS + A L T L++ F+ +A+
Sbjct: 387 -----------------DSKKERDARTL----LAKNLPYKVTQDELKEVFED-----AAE 420
Query: 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
+ G+S+G ++ F+T D + + G E++GR + L E+
Sbjct: 421 IRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEK 469
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 537
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 538 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 584
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM E++G +
Sbjct: 585 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 641
Query: 289 LNMANER 295
L+ A +
Sbjct: 642 LDWAKPK 648
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 34/198 (17%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI +S+G ++ + +A++
Sbjct: 391 DARTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKT 445
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDSP-----HKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 446 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 494
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ T + L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 495 YSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 546
Query: 281 EVEGRPLRLNMANERAPP 298
E+EGR +RL + R P
Sbjct: 547 EIEGRAIRLELQGPRGSP 564
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 46/227 (20%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTS----SSLAEVFAE 135
++ P ++E +++A E ++ KV ++ A L+VGNL ++ ++ + +++VFA+
Sbjct: 274 KEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAK 333
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 195
V D +R FG+V S E+ ++A+ L G ++ G +K+ E P+G
Sbjct: 334 NDLA-----VVDVRIGMTRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGK 384
Query: 196 ----ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251
ER A + A NL + +T L++ F+ +A++
Sbjct: 385 DSKKERDA----------------RTLLAKNLPYKVTQDELKEVFED-----AAEIRLVS 423
Query: 252 YTGRSRGFGFVTF---ETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
G+S+G ++ F AE + G E++GR + L E+
Sbjct: 424 KDGKSKGIAYIEFKTEADAE---KTFEEKQGTEIDGRSISLYYTGEK 467
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 483 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 538
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GR +++ + PRG A P ++ L T
Sbjct: 539 EALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 585
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288
+ L+++F G + A+++ +R TG S+GFGFV F + ED ++A +AM E++G +
Sbjct: 586 EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 642
Query: 289 LNMANER 295
L+ A +
Sbjct: 643 LDWAKPK 649
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 34/198 (17%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L NLPY +T L EVF +A AEI +S+G ++ + +A++
Sbjct: 392 DARTLLAKNLPYKVTQDELKEVFEDA-----AEIRLVSKDGKSKGIAYIEFKTEADAEKT 446
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVDSP-----HKIYAGNLG 224
G++I GR++ + + G K QN Y+G +S + NL
Sbjct: 447 FEEKQGTEIDGRSISLYY-----------TGEKGQNQDYRGGKNSTWSGESKTLVLSNLS 495
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIF----ERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ T + L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 496 YSATEETLQEVFE--------KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 547
Query: 281 EVEGRPLRLNMANERAPP 298
E+EGR +RL + R P
Sbjct: 548 EIEGRAIRLELQGPRGSP 565
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 46/227 (20%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTS----SSLAEVFAE 135
++ P ++E +++A E ++ KV ++ A L+VGNL ++ ++ + +++VFA+
Sbjct: 275 KEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAK 334
Query: 136 AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 195
V D +R FG+V S E+ ++A+ L G ++ G +K+ E P+G
Sbjct: 335 NDLA-----VVDVRIGMTRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGK 385
Query: 196 ----ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251
ER A + A NL + +T L++ F+ +A++
Sbjct: 386 DSKKERDA----------------RTLLAKNLPYKVTQDELKEVFED-----AAEIRLVS 424
Query: 252 YTGRSRGFGFVTF---ETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
G+S+G ++ F AE + G E++GR + L E+
Sbjct: 425 KDGKSKGIAYIEFKTEADAE---KTFEEKQGTEIDGRSISLYYTGEK 468
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+E L++G+L Y M + L+ F G + SA+++ ++ T +S G+GF+ S A+
Sbjct: 81 NEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAET 140
Query: 170 AIRLFDGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++ ++G+ + + ++N+ + G R + H I+ G+L +
Sbjct: 141 ILQTYNGTLMPNVEQNFRMNWASLGAGERRDD-------------SAEHTIFVGDLAADV 187
Query: 228 TSQGLRDAFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286
T L++ F+ + AKV+ +R TGRS+G+GFV F + A+ MNGV RP
Sbjct: 188 TDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRP 247
Query: 287 LRLNMANERAP 297
+R+ A + P
Sbjct: 248 MRIGPAANKKP 258
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V DR+T RS+G+GFV E A+
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 237
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK---LQN--SYQGFVDSPHK-IYAGNLGWGL 227
+G R +++ P ++ P+ QN + QG D + I+ G L +
Sbjct: 238 MNGVLCSTRPMRIG----PAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTV 293
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
+ LR F L+ K++ + GFV F T + AL ++NG ++ G+ +
Sbjct: 294 AEEHLRQVFSPYGELVHVKIV------AGKRCGFVQFGTRASAEQALSSLNGTQLGGQSI 347
Query: 288 RLNMANERAPPVLPAAKET 306
RL+ P++K+T
Sbjct: 348 RLSWGRS------PSSKQT 360
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 12/182 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++ D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLPVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F +LS KV+ + +G SR FGFV FE E+ Q A+ MNG EV GR L A +
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 295 RA 296
R
Sbjct: 269 RV 270
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 14/191 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +YV NLP + L ++F++ G + S +++ D + SR FGFV EEA++A
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLG 224
+ +G ++ GR + + V R E +++ YQG +Y NL
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG V
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 285 RPLRLNMANER 295
+PL + +A +
Sbjct: 361 KPLYVALAQRK 371
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
D F +LS KV + + SRGFGFV FET E Q A++ MNG+ + R
Sbjct: 116 YDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y G+L +T L + F +LS +V + T RS G+ ++ F+ D + ALD M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKET----KTENSIDGSELLSSIST 323
N ++G+P+R+ M ++R P + + E+SID L + ST
Sbjct: 73 NFEMLKGQPIRI-MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFST 121
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 157
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + G S+G+GFV +ETAE Q+A+ +NG+
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGM 206
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 93/181 (51%), Gaps = 10/181 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A+ AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y N+ T + RD
Sbjct: 204 NGMLLNDKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNIDQDTTEEEFRD 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F+ + SA + + +G+SRGFGFV F + ++ +A++A+N + +G+ L + A +
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQK 314
Query: 295 R 295
+
Sbjct: 315 K 315
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+YV N+ T ++F + G + SA + D + +SRGFGFV S + A A+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 172 --RLFDGSQIG-GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ F G ++ GR K + E + A + + YQG +Y NL +
Sbjct: 298 NDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV-----NLYIKNLSDDID 352
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR+ F + SAKV+
Sbjct: 353 DEKLRELFSSYGTITSAKVM 372
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 215 PHK--IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
PH +Y G L +T L + F + S +V + T RS G+ +V + D +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 273 ALDAMNGVEVEGRPLRLNMANERAP 297
AL+ +N ++GRP R+ M ++R P
Sbjct: 112 ALEDLNYTLIKGRPCRI-MWSQRDP 135
Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 254 GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
G+S+GFGFV F + ++ A+ MN V G+PL + +A +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRK 471
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LY+ NL + L E+F+ GT+ SA+++
Sbjct: 313 QKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVM 372
Query: 146 YD 147
D
Sbjct: 373 RD 374
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG+ + R
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 14/195 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G + G+++ V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 EVEGRPLRLNMANER 295
V +PL + +A +
Sbjct: 357 IVATKPLYVALAQRK 371
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGDDMNDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + G+S+GFGFV+FE ED Q A+D MNG ++ G+ + + A +
Sbjct: 210 MFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Query: 295 R 295
+
Sbjct: 269 K 269
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 100 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 159
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ +GGR +KV P G+ + +L + F ++IY ++ L+ +
Sbjct: 160 QMNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 213
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 214 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Query: 293 NERAPPVLPAA 303
P+L A
Sbjct: 274 VTPPMPLLTPA 284
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 18/229 (7%)
Query: 71 SFDGFQVTEDSQDEPETEQEEEEEEEAVE---EEEEPKVAASDEAARLYVGNLPYSMTSS 127
++ FQ T+D++ +T + + + V + +P + S ++V NL S+ +
Sbjct: 55 AYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFVKNLDKSINNK 113
Query: 128 SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV- 186
+L + + G + S +V D + S+G+GFV + E A+ AI+ +G + GR V V
Sbjct: 114 ALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVG 171
Query: 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK 246
F R A +G + + + P+ +Y N G + + L+D F LS K
Sbjct: 172 QFKS--RKEREAELGARAK-------EFPN-VYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295
V+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A ++
Sbjct: 222 VMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH------KIYA 220
A++A+ +G ++ G+ + V R ++ +L+ +++ +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVG-----RAQKKVERQTELKRTFEQMKQDRITRYQVVNLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR AF + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 EVEGRPLRLNMANER 295
V +PL + +A +
Sbjct: 357 IVATKPLYVALAQRK 371
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 17/173 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S I D +T S + +V ++A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDKSINNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
D +LS V+ + S+G+GFV FET E + A+ MNG+ + GR
Sbjct: 116 YDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQAY---LTNEY 382
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 128 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 187
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ +GGR +KV P G+ + +L + F ++IY ++ L+ +
Sbjct: 188 QMNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 241
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 242 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
Query: 293 NERAPPVLPAA 303
P+L A
Sbjct: 302 VTPPMPLLTPA 312
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 129 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 188
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ +GGR +KV P G+ + +L + F ++IY ++ L+ +
Sbjct: 189 QMNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 242
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 243 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Query: 293 NERAPPVLPAA 303
P+L A
Sbjct: 303 VTPPMPLLTPA 313
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A ++ L + L + F+ G V I+ DR + RS+G +V ++ A
Sbjct: 164 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA 223
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
I L G ++ G + V + + AAM LQ G P ++Y G+L + +T
Sbjct: 224 IGL-TGQRLLGVPIIVQASQAEKN-RLAAMANNLQKGNGG----PMRLYVGSLHFNITED 277
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290
LR F+ + + ++ + TGRS+G+GF+TF +E + AL+ +NG E+ GRP+R+
Sbjct: 278 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 337
Query: 291 MANER 295
ER
Sbjct: 338 HVTER 342
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 3/188 (1%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S+E ++VG L +++ L + F E GT+ A ++ D + RS+G+G+V + E AK
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGL 227
A+ +I GR V ++ PR + ++ + P ++ GNL +
Sbjct: 319 AAVAANGTKEIDGRMVNLDLSN-PRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNA 377
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287
T L AF G + S ++ + +GR +GFG+VTF + + ++ MNG + GRP
Sbjct: 378 TEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPC 436
Query: 288 RLNMANER 295
RL+ + R
Sbjct: 437 RLDFSTPR 444
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ G L W + Q L F+ ++ A+VI + +GRS+G+G+V FET E ++A+ A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 278 NGVEVEGRPLRLNMANERAPPVLPAAKE 305
E++GR + L+++N R P A++
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQ 352
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 134 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 193
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ +GGR +KV P G+ + +L + F ++IY ++ L+ +
Sbjct: 194 QMNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 247
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 248 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Query: 293 NERAPPVLPAA 303
P+L A
Sbjct: 308 VTPPMPLLTPA 318
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 134 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 193
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ +GGR +KV P G+ + +L + F ++IY ++ L+ +
Sbjct: 194 QMNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDI 247
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292
+ F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN ++ G+ LR+ A
Sbjct: 248 KSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Query: 293 NERAPPVLPAA 303
P+L A
Sbjct: 308 VTPPMPLLTPA 318
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A +
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 295 R 295
+
Sbjct: 269 K 269
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 EVEGRPLRLNMANER 295
V +PL + +A +
Sbjct: 357 IVATKPLYVALAQRK 371
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+ + R
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A +
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 295 R 295
+
Sbjct: 269 K 269
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 EVEGRPLRLNMANER 295
V +PL + +A +
Sbjct: 357 IVATKPLYVALAQRK 371
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+ + R
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A +
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 295 R 295
+
Sbjct: 269 K 269
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 EVEGRPLRLNMANER 295
V +PL + +A +
Sbjct: 357 IVATKPLYVALAQRK 371
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+ + R
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 EVEGRPLRLNMANER 295
V +PL + +A +
Sbjct: 357 IVATKPLYVALAQRK 371
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A +
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 295 R 295
+
Sbjct: 269 K 269
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+ + R
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 281 EVEGRPLRLNMANER 295
V +PL + +A +
Sbjct: 357 IVATKPLYVALAQRK 371
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG E+ G+ + + A +
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 295 R 295
+
Sbjct: 269 K 269
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+ + R
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,636,344
Number of Sequences: 539616
Number of extensions: 4808014
Number of successful extensions: 70343
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 408
Number of HSP's that attempted gapping in prelim test: 49909
Number of HSP's gapped (non-prelim): 12655
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)