Query 020607
Match_columns 323
No_of_seqs 304 out of 2009
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 8.7E-34 1.9E-38 260.3 21.9 174 108-298 103-278 (346)
2 TIGR01645 half-pint poly-U bin 100.0 2.1E-33 4.5E-38 270.7 22.4 185 109-299 104-288 (612)
3 KOG0148 Apoptosis-promoting RN 100.0 1.8E-32 3.8E-37 232.1 16.7 185 111-302 61-245 (321)
4 KOG0113 U1 small nuclear ribon 100.0 8.8E-33 1.9E-37 237.0 11.9 163 25-190 2-179 (335)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.2E-31 4.8E-36 247.9 21.4 169 111-296 2-172 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.2E-31 1.8E-35 244.1 23.6 187 111-297 88-351 (352)
7 TIGR01622 SF-CC1 splicing fact 100.0 1.9E-30 4.2E-35 249.8 24.1 183 108-296 85-267 (457)
8 TIGR01628 PABP-1234 polyadenyl 100.0 7.6E-29 1.7E-33 244.4 21.0 169 114-298 2-170 (562)
9 KOG0144 RNA-binding protein CU 100.0 6.1E-29 1.3E-33 222.7 13.8 169 113-298 35-209 (510)
10 TIGR01628 PABP-1234 polyadenyl 100.0 4.1E-28 9E-33 239.2 20.1 186 109-296 175-365 (562)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 2.1E-27 4.5E-32 229.0 21.2 179 111-298 57-310 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.6E-27 1.4E-31 228.2 22.6 182 109-297 172-377 (509)
13 KOG0131 Splicing factor 3b, su 100.0 6.2E-28 1.3E-32 193.6 12.3 174 109-298 6-180 (203)
14 KOG0127 Nucleolar protein fibr 100.0 1.5E-27 3.3E-32 219.2 16.3 184 113-297 6-198 (678)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.4E-26 5.1E-31 224.3 22.0 185 110-294 293-501 (509)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.7E-26 5.9E-31 221.5 21.4 171 111-296 1-175 (481)
17 KOG0145 RNA-binding protein EL 99.9 4.2E-27 9.1E-32 198.4 13.7 169 110-295 39-209 (360)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.2E-26 9E-31 220.2 22.0 179 110-295 273-480 (481)
19 KOG0117 Heterogeneous nuclear 99.9 1.6E-26 3.4E-31 208.2 16.6 184 110-301 81-337 (506)
20 KOG0127 Nucleolar protein fibr 99.9 2E-25 4.4E-30 205.3 19.5 191 110-301 115-384 (678)
21 TIGR01622 SF-CC1 splicing fact 99.9 4.4E-24 9.5E-29 205.7 22.6 179 112-294 186-447 (457)
22 KOG0109 RNA-binding protein LA 99.9 3.3E-25 7.1E-30 189.8 11.6 152 114-300 4-155 (346)
23 KOG0145 RNA-binding protein EL 99.9 2E-24 4.3E-29 182.3 15.9 185 112-296 127-359 (360)
24 KOG0110 RNA-binding protein (R 99.9 1.4E-24 3.1E-29 205.5 15.7 175 115-297 518-695 (725)
25 KOG0124 Polypyrimidine tract-b 99.9 1.6E-24 3.5E-29 190.7 8.5 182 112-299 113-294 (544)
26 KOG0123 Polyadenylate-binding 99.9 6.9E-23 1.5E-27 189.3 16.2 157 114-301 3-159 (369)
27 KOG0147 Transcriptional coacti 99.9 4.9E-23 1.1E-27 190.4 8.0 190 108-301 175-364 (549)
28 KOG0144 RNA-binding protein CU 99.9 7.4E-22 1.6E-26 177.4 12.2 189 110-299 122-508 (510)
29 KOG4205 RNA-binding protein mu 99.9 7.8E-22 1.7E-26 176.4 10.3 178 111-301 5-182 (311)
30 KOG0146 RNA-binding protein ET 99.9 2.7E-21 5.8E-26 164.0 12.3 186 111-297 18-367 (371)
31 TIGR01645 half-pint poly-U bin 99.9 1.1E-19 2.4E-24 176.0 22.6 80 111-190 203-282 (612)
32 KOG0148 Apoptosis-promoting RN 99.8 9E-21 2E-25 161.2 11.5 141 109-296 3-143 (321)
33 KOG0123 Polyadenylate-binding 99.8 7.8E-20 1.7E-24 169.1 15.0 167 115-294 79-245 (369)
34 KOG0105 Alternative splicing f 99.8 6.2E-19 1.3E-23 142.1 16.7 174 110-293 4-188 (241)
35 KOG4206 Spliceosomal protein s 99.8 2E-18 4.4E-23 144.2 16.5 177 109-293 6-220 (221)
36 KOG1548 Transcription elongati 99.8 1.6E-17 3.4E-22 146.0 18.3 185 112-301 134-358 (382)
37 KOG4211 Splicing factor hnRNP- 99.8 9.2E-18 2E-22 153.8 16.8 173 110-293 8-180 (510)
38 KOG0147 Transcriptional coacti 99.8 2.4E-18 5.2E-23 159.5 11.5 179 111-294 277-527 (549)
39 PLN03134 glycine-rich RNA-bind 99.8 1.1E-17 2.4E-22 135.3 13.4 87 213-299 32-118 (144)
40 KOG4212 RNA-binding protein hn 99.7 4.9E-17 1.1E-21 146.7 16.4 182 110-293 42-292 (608)
41 PLN03134 glycine-rich RNA-bind 99.7 2.6E-17 5.7E-22 133.2 12.1 85 109-193 31-115 (144)
42 KOG0106 Alternative splicing f 99.7 9.4E-18 2E-22 141.6 8.4 162 114-291 3-167 (216)
43 KOG0110 RNA-binding protein (R 99.7 3.2E-16 7E-21 149.2 14.0 180 108-293 381-596 (725)
44 COG0724 RNA-binding proteins ( 99.7 7.3E-16 1.6E-20 137.2 14.7 165 112-276 115-286 (306)
45 PF00076 RRM_1: RNA recognitio 99.6 1.2E-15 2.5E-20 107.9 9.6 70 115-185 1-70 (70)
46 PF00076 RRM_1: RNA recognitio 99.6 1.4E-15 3E-20 107.5 9.4 70 218-288 1-70 (70)
47 KOG1190 Polypyrimidine tract-b 99.6 6.6E-15 1.4E-19 132.1 15.9 174 112-294 297-490 (492)
48 KOG0120 Splicing factor U2AF, 99.6 1.9E-15 4.1E-20 142.0 10.5 186 109-294 286-491 (500)
49 KOG0124 Polypyrimidine tract-b 99.6 3.7E-15 8.1E-20 131.9 11.5 183 109-291 207-531 (544)
50 KOG1457 RNA binding protein (c 99.6 2.3E-14 4.9E-19 119.2 14.8 168 111-282 33-273 (284)
51 TIGR01659 sex-lethal sex-letha 99.6 3.8E-15 8.3E-20 137.2 10.6 84 213-296 105-188 (346)
52 KOG0122 Translation initiation 99.6 6.7E-15 1.5E-19 124.0 9.9 83 109-191 186-268 (270)
53 PF14259 RRM_6: RNA recognitio 99.6 8.9E-15 1.9E-19 103.7 8.8 70 115-185 1-70 (70)
54 KOG0149 Predicted RNA-binding 99.6 3.7E-15 7.9E-20 125.1 7.3 80 111-191 11-90 (247)
55 PF14259 RRM_6: RNA recognitio 99.6 1.4E-14 3.1E-19 102.6 9.2 70 218-288 1-70 (70)
56 KOG0122 Translation initiation 99.6 9.6E-15 2.1E-19 123.1 9.5 83 213-295 187-269 (270)
57 KOG0149 Predicted RNA-binding 99.6 4.7E-15 1E-19 124.5 7.4 82 214-296 11-92 (247)
58 TIGR01648 hnRNP-R-Q heterogene 99.6 2.8E-14 6.1E-19 138.3 12.9 126 111-244 232-370 (578)
59 KOG0125 Ataxin 2-binding prote 99.6 1.1E-14 2.3E-19 127.5 8.7 83 212-296 93-175 (376)
60 KOG0126 Predicted RNA-binding 99.5 7.1E-16 1.5E-20 124.3 -0.1 83 109-191 32-114 (219)
61 KOG1365 RNA-binding protein Fu 99.5 1.7E-14 3.7E-19 128.5 8.5 178 112-292 161-359 (508)
62 KOG0113 U1 small nuclear ribon 99.5 6.4E-14 1.4E-18 121.2 10.5 87 212-298 98-184 (335)
63 KOG4207 Predicted splicing fac 99.5 1.8E-14 3.8E-19 118.5 6.4 87 212-298 10-96 (256)
64 PLN03120 nucleic acid binding 99.5 6.7E-14 1.5E-18 121.4 10.0 76 112-191 4-79 (260)
65 PLN03120 nucleic acid binding 99.5 1.3E-13 2.8E-18 119.6 11.3 80 215-298 4-83 (260)
66 KOG0125 Ataxin 2-binding prote 99.5 6.4E-14 1.4E-18 122.6 9.0 83 108-192 92-174 (376)
67 KOG4207 Predicted splicing fac 99.5 3.5E-14 7.5E-19 116.8 6.8 86 109-194 10-95 (256)
68 KOG0108 mRNA cleavage and poly 99.5 3E-14 6.5E-19 133.2 6.9 82 113-194 19-100 (435)
69 KOG0107 Alternative splicing f 99.5 6.6E-14 1.4E-18 112.4 7.6 78 111-193 9-86 (195)
70 KOG0415 Predicted peptidyl pro 99.5 8.2E-14 1.8E-18 123.0 8.6 86 105-190 232-317 (479)
71 KOG4212 RNA-binding protein hn 99.5 1.2E-12 2.7E-17 118.5 15.7 78 110-188 213-290 (608)
72 KOG0121 Nuclear cap-binding pr 99.5 1.4E-13 3.1E-18 104.9 7.4 83 109-191 33-115 (153)
73 PLN03213 repressor of silencin 99.5 1.9E-13 4.1E-18 125.4 9.6 76 111-190 9-86 (759)
74 smart00362 RRM_2 RNA recogniti 99.5 4.6E-13 1E-17 94.1 9.6 72 114-187 1-72 (72)
75 KOG1190 Polypyrimidine tract-b 99.5 2.3E-12 4.9E-17 116.0 16.0 179 114-301 152-379 (492)
76 smart00362 RRM_2 RNA recogniti 99.5 3.6E-13 7.9E-18 94.6 8.9 72 217-290 1-72 (72)
77 KOG0114 Predicted RNA-binding 99.5 5.2E-13 1.1E-17 98.0 9.1 81 212-295 15-95 (124)
78 KOG0126 Predicted RNA-binding 99.4 1.9E-14 4.2E-19 116.0 1.3 86 214-299 34-119 (219)
79 KOG0114 Predicted RNA-binding 99.4 6.3E-13 1.4E-17 97.6 9.0 80 109-191 15-94 (124)
80 KOG0121 Nuclear cap-binding pr 99.4 2.3E-13 5E-18 103.7 7.0 79 214-292 35-113 (153)
81 PLN03213 repressor of silencin 99.4 3E-13 6.4E-18 124.2 8.8 77 214-294 9-87 (759)
82 smart00360 RRM RNA recognition 99.4 8.6E-13 1.9E-17 92.3 8.9 71 117-187 1-71 (71)
83 KOG0130 RNA-binding protein RB 99.4 2.4E-13 5.1E-18 104.6 6.3 86 107-192 67-152 (170)
84 smart00360 RRM RNA recognition 99.4 5.6E-13 1.2E-17 93.3 7.9 71 220-290 1-71 (71)
85 PLN03121 nucleic acid binding 99.4 8.2E-13 1.8E-17 112.8 10.2 77 111-191 4-80 (243)
86 KOG0107 Alternative splicing f 99.4 3.9E-13 8.5E-18 108.0 7.6 79 214-297 9-87 (195)
87 KOG0117 Heterogeneous nuclear 99.4 2.7E-12 5.9E-17 116.7 13.2 123 162-296 42-165 (506)
88 KOG0120 Splicing factor U2AF, 99.4 9.8E-13 2.1E-17 123.8 9.8 185 110-301 173-375 (500)
89 PLN03121 nucleic acid binding 99.4 1.9E-12 4.2E-17 110.6 10.5 81 214-298 4-84 (243)
90 KOG0111 Cyclophilin-type pepti 99.4 3.2E-13 7E-18 112.1 4.7 89 109-197 7-95 (298)
91 cd00590 RRM RRM (RNA recogniti 99.4 5.1E-12 1.1E-16 89.2 10.3 74 114-188 1-74 (74)
92 KOG0130 RNA-binding protein RB 99.4 8.9E-13 1.9E-17 101.4 6.5 85 214-298 71-155 (170)
93 cd00590 RRM RRM (RNA recogniti 99.4 4.5E-12 9.7E-17 89.5 9.7 74 217-291 1-74 (74)
94 KOG0108 mRNA cleavage and poly 99.4 1.1E-12 2.4E-17 122.7 8.1 82 216-297 19-100 (435)
95 KOG0131 Splicing factor 3b, su 99.3 1.2E-12 2.6E-17 105.9 5.2 81 214-294 8-88 (203)
96 COG0724 RNA-binding proteins ( 99.3 4.9E-12 1.1E-16 112.5 9.8 80 215-294 115-194 (306)
97 KOG1456 Heterogeneous nuclear 99.3 1.9E-11 4E-16 109.0 13.0 173 107-300 26-204 (494)
98 PF13893 RRM_5: RNA recognitio 99.3 6.7E-12 1.5E-16 84.8 7.9 56 232-292 1-56 (56)
99 KOG0111 Cyclophilin-type pepti 99.3 1.1E-12 2.4E-17 108.9 4.4 83 214-296 9-91 (298)
100 KOG4211 Splicing factor hnRNP- 99.3 4.6E-11 1E-15 110.2 14.5 178 110-292 101-355 (510)
101 KOG0129 Predicted RNA-binding 99.3 3E-11 6.5E-16 112.1 13.2 162 111-276 258-432 (520)
102 smart00361 RRM_1 RNA recogniti 99.3 9.7E-12 2.1E-16 88.0 7.6 62 229-290 2-70 (70)
103 smart00361 RRM_1 RNA recogniti 99.3 1.4E-11 3.1E-16 87.2 8.5 61 126-186 2-69 (70)
104 KOG4210 Nuclear localization s 99.3 5.5E-12 1.2E-16 112.9 7.5 181 110-298 86-267 (285)
105 KOG1456 Heterogeneous nuclear 99.2 7.5E-10 1.6E-14 98.9 16.9 171 107-284 282-474 (494)
106 PF13893 RRM_5: RNA recognitio 99.2 3.9E-11 8.5E-16 81.0 6.7 56 129-189 1-56 (56)
107 KOG4208 Nucleolar RNA-binding 99.2 4.1E-11 8.9E-16 99.1 7.7 84 108-191 45-129 (214)
108 KOG0105 Alternative splicing f 99.2 2.8E-11 6.1E-16 98.1 5.8 80 214-296 5-84 (241)
109 KOG4454 RNA binding protein (R 99.2 5.9E-12 1.3E-16 104.7 1.2 149 108-289 5-157 (267)
110 KOG0128 RNA-binding protein SA 99.1 5.7E-12 1.2E-16 122.8 -1.4 148 112-294 667-814 (881)
111 KOG4206 Spliceosomal protein s 99.1 1.7E-10 3.6E-15 97.0 7.3 85 214-301 8-96 (221)
112 KOG0226 RNA-binding proteins [ 99.1 7.3E-11 1.6E-15 100.3 5.0 168 114-293 98-268 (290)
113 KOG0415 Predicted peptidyl pro 99.1 2.1E-10 4.5E-15 101.7 6.7 86 212-297 236-321 (479)
114 KOG0109 RNA-binding protein LA 99.1 2.3E-10 4.9E-15 99.1 6.3 78 216-301 3-80 (346)
115 KOG1365 RNA-binding protein Fu 99.1 8.7E-10 1.9E-14 98.7 10.0 177 109-289 57-237 (508)
116 KOG0153 Predicted RNA-binding 99.0 8.1E-10 1.7E-14 97.9 8.8 75 214-294 227-302 (377)
117 KOG4208 Nucleolar RNA-binding 99.0 9.4E-10 2E-14 91.1 7.5 83 213-295 47-130 (214)
118 KOG0132 RNA polymerase II C-te 99.0 2.4E-09 5.3E-14 103.6 9.1 111 109-237 418-528 (894)
119 KOG0112 Large RNA-binding prot 99.0 5.4E-10 1.2E-14 109.6 4.6 169 107-301 367-537 (975)
120 KOG0132 RNA polymerase II C-te 98.9 2E-09 4.3E-14 104.2 7.4 79 215-299 421-499 (894)
121 KOG0146 RNA-binding protein ET 98.9 1.9E-09 4.1E-14 92.4 6.0 85 107-191 280-364 (371)
122 KOG4307 RNA binding protein RB 98.9 1.4E-08 2.9E-13 97.4 11.0 76 216-291 868-943 (944)
123 KOG4205 RNA-binding protein mu 98.8 4.2E-09 9.1E-14 94.8 6.1 155 111-279 96-256 (311)
124 KOG4660 Protein Mei2, essentia 98.8 6.4E-09 1.4E-13 97.6 6.5 175 107-294 70-249 (549)
125 KOG0533 RRM motif-containing p 98.8 2.4E-08 5.2E-13 86.6 8.5 82 112-194 83-164 (243)
126 KOG0153 Predicted RNA-binding 98.8 1.7E-08 3.7E-13 89.7 7.6 76 110-191 226-302 (377)
127 KOG0533 RRM motif-containing p 98.8 3.1E-08 6.8E-13 85.9 8.5 85 213-298 81-165 (243)
128 KOG1457 RNA binding protein (c 98.8 5.4E-08 1.2E-12 81.6 9.4 92 214-305 33-128 (284)
129 PF04059 RRM_2: RNA recognitio 98.7 7.1E-08 1.5E-12 71.9 8.8 81 216-296 2-88 (97)
130 PF12220 U1snRNP70_N: U1 small 98.7 1.6E-09 3.4E-14 80.9 -0.2 50 25-76 2-51 (94)
131 PF04059 RRM_2: RNA recognitio 98.7 2.4E-07 5.2E-12 69.1 9.9 78 113-190 2-85 (97)
132 KOG0116 RasGAP SH3 binding pro 98.7 5.2E-08 1.1E-12 91.1 7.7 81 109-190 285-365 (419)
133 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.4E-08 9.4E-13 92.0 6.9 82 215-296 405-486 (940)
134 KOG4661 Hsp27-ERE-TATA-binding 98.7 9.6E-08 2.1E-12 89.8 9.0 86 110-195 403-488 (940)
135 KOG4307 RNA binding protein RB 98.7 8.3E-08 1.8E-12 92.1 8.5 180 111-292 310-511 (944)
136 KOG0116 RasGAP SH3 binding pro 98.6 1.3E-07 2.8E-12 88.5 8.4 83 214-297 287-369 (419)
137 KOG4209 Splicing factor RNPS1, 98.6 9.8E-08 2.1E-12 82.9 6.6 82 214-296 100-181 (231)
138 KOG4209 Splicing factor RNPS1, 98.6 6.9E-08 1.5E-12 83.9 5.4 83 108-191 97-179 (231)
139 KOG1548 Transcription elongati 98.6 2.2E-07 4.8E-12 82.7 8.2 80 214-294 133-220 (382)
140 KOG0226 RNA-binding proteins [ 98.6 7.6E-08 1.6E-12 82.2 5.0 81 110-190 188-268 (290)
141 KOG4676 Splicing factor, argin 98.5 1.3E-07 2.8E-12 85.3 5.0 167 112-284 7-215 (479)
142 KOG0106 Alternative splicing f 98.5 1.4E-07 3E-12 80.2 4.2 72 216-295 2-73 (216)
143 KOG4660 Protein Mei2, essentia 98.4 1.3E-07 2.8E-12 89.0 3.5 70 214-288 74-143 (549)
144 KOG0151 Predicted splicing reg 98.4 1.1E-06 2.3E-11 84.9 9.1 84 214-297 173-259 (877)
145 KOG2193 IGF-II mRNA-binding pr 98.4 4.3E-08 9.3E-13 89.1 -1.3 155 113-297 2-159 (584)
146 KOG0151 Predicted splicing reg 98.4 1.3E-06 2.8E-11 84.3 8.0 80 112-191 174-256 (877)
147 KOG4454 RNA binding protein (R 98.2 5.5E-07 1.2E-11 75.4 1.5 79 214-294 8-86 (267)
148 KOG3152 TBP-binding protein, a 98.1 2.3E-06 5E-11 73.3 4.3 74 111-184 73-158 (278)
149 KOG1995 Conserved Zn-finger pr 98.1 2.4E-06 5.1E-11 76.8 3.9 84 214-297 65-156 (351)
150 PF11608 Limkain-b1: Limkain b 98.1 5E-06 1.1E-10 59.3 4.8 71 216-296 3-78 (90)
151 PF11608 Limkain-b1: Limkain b 98.0 3.2E-05 6.9E-10 55.2 7.7 69 113-191 3-76 (90)
152 KOG0128 RNA-binding protein SA 98.0 2.9E-07 6.3E-12 90.5 -4.0 165 111-283 570-735 (881)
153 PF08777 RRM_3: RNA binding mo 98.0 2.2E-05 4.8E-10 59.8 7.1 70 216-291 2-76 (105)
154 COG5175 MOT2 Transcriptional r 98.0 2.6E-05 5.7E-10 69.4 7.3 81 110-190 112-201 (480)
155 KOG3152 TBP-binding protein, a 97.8 1E-05 2.3E-10 69.4 2.4 71 216-286 75-157 (278)
156 KOG1995 Conserved Zn-finger pr 97.8 2.3E-05 4.9E-10 70.6 4.6 83 109-191 63-153 (351)
157 KOG2314 Translation initiation 97.8 0.00014 3E-09 69.0 9.8 78 110-188 56-140 (698)
158 COG5175 MOT2 Transcriptional r 97.7 0.00011 2.3E-09 65.6 6.4 79 216-294 115-202 (480)
159 KOG4210 Nuclear localization s 97.6 3.1E-05 6.7E-10 69.7 2.9 82 111-193 183-265 (285)
160 PF08777 RRM_3: RNA binding mo 97.5 0.00016 3.4E-09 55.1 5.0 69 113-187 2-75 (105)
161 KOG0115 RNA-binding protein p5 97.5 0.00023 5.1E-09 61.3 6.3 100 166-290 6-109 (275)
162 KOG4849 mRNA cleavage factor I 97.4 0.00013 2.8E-09 65.4 3.7 77 112-188 80-158 (498)
163 KOG1996 mRNA splicing factor [ 97.4 0.00037 8.1E-09 61.1 6.4 65 229-293 300-365 (378)
164 KOG0129 Predicted RNA-binding 97.4 0.00054 1.2E-08 64.6 7.6 66 108-173 366-432 (520)
165 KOG1855 Predicted RNA-binding 97.3 0.00029 6.4E-09 64.8 4.4 81 214-294 230-323 (484)
166 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0015 3.2E-08 49.1 6.9 78 215-294 6-91 (100)
167 PF08952 DUF1866: Domain of un 97.2 0.0021 4.6E-08 51.3 8.0 74 213-295 25-107 (146)
168 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0012 2.6E-08 43.6 5.0 52 113-171 2-53 (53)
169 KOG4849 mRNA cleavage factor I 97.0 0.0006 1.3E-08 61.2 3.7 79 215-293 80-161 (498)
170 KOG2314 Translation initiation 97.0 0.00092 2E-08 63.6 5.0 76 215-291 58-140 (698)
171 KOG2202 U2 snRNP splicing fact 97.0 0.00042 9.1E-09 59.8 2.0 63 127-190 83-146 (260)
172 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0021 4.5E-08 42.5 4.7 52 216-274 2-53 (53)
173 KOG1855 Predicted RNA-binding 96.9 0.001 2.2E-08 61.4 3.8 78 110-187 229-319 (484)
174 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0039 8.4E-08 46.9 6.2 76 112-189 6-89 (100)
175 KOG4676 Splicing factor, argin 96.8 0.0026 5.6E-08 58.1 6.1 83 216-299 8-93 (479)
176 KOG2202 U2 snRNP splicing fact 96.8 0.00058 1.3E-08 59.0 1.7 63 230-293 83-146 (260)
177 KOG1996 mRNA splicing factor [ 96.7 0.005 1.1E-07 54.2 6.4 65 126-190 300-365 (378)
178 KOG2416 Acinus (induces apopto 96.6 0.0026 5.7E-08 61.0 4.6 77 212-294 441-521 (718)
179 KOG0112 Large RNA-binding prot 96.5 0.0039 8.4E-08 62.6 5.1 79 109-193 452-532 (975)
180 PF08952 DUF1866: Domain of un 96.3 0.014 3E-07 46.7 6.6 78 107-193 22-108 (146)
181 PF10309 DUF2414: Protein of u 96.3 0.021 4.5E-07 38.8 6.4 55 215-277 5-62 (62)
182 KOG2416 Acinus (induces apopto 95.7 0.011 2.4E-07 56.8 3.8 76 109-190 441-520 (718)
183 PF07576 BRAP2: BRCA1-associat 95.6 0.14 3.1E-06 39.2 9.0 69 111-181 12-81 (110)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.013 2.8E-07 49.0 3.2 80 111-190 6-96 (176)
185 PF07576 BRAP2: BRCA1-associat 95.4 0.17 3.6E-06 38.8 8.9 67 216-284 14-81 (110)
186 PF08675 RNA_bind: RNA binding 95.3 0.08 1.7E-06 38.0 6.3 55 112-175 9-63 (87)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.064 1.4E-06 44.9 6.5 85 214-298 6-101 (176)
188 KOG0115 RNA-binding protein p5 95.1 0.029 6.3E-07 48.7 4.1 75 113-188 32-110 (275)
189 KOG2193 IGF-II mRNA-binding pr 94.8 0.035 7.7E-07 51.4 4.3 74 216-295 2-76 (584)
190 PF10309 DUF2414: Protein of u 94.8 0.23 5E-06 33.7 7.1 53 113-174 6-62 (62)
191 PF04847 Calcipressin: Calcipr 94.6 0.11 2.4E-06 43.6 6.5 62 228-295 8-71 (184)
192 PF08675 RNA_bind: RNA binding 94.6 0.25 5.4E-06 35.6 7.2 55 216-279 10-64 (87)
193 KOG0804 Cytoplasmic Zn-finger 94.3 0.36 7.8E-06 45.4 9.4 68 112-181 74-142 (493)
194 KOG2068 MOT2 transcription fac 94.2 0.017 3.8E-07 52.0 0.9 79 216-294 78-162 (327)
195 KOG2068 MOT2 transcription fac 94.0 0.025 5.5E-07 51.0 1.5 78 112-190 77-161 (327)
196 KOG2591 c-Mpl binding protein, 94.0 0.094 2E-06 50.3 5.2 74 108-188 171-248 (684)
197 KOG4285 Mitotic phosphoprotein 93.8 0.23 4.9E-06 44.3 6.8 71 216-294 198-269 (350)
198 PF15023 DUF4523: Protein of u 93.2 0.44 9.6E-06 37.9 6.9 74 212-293 83-160 (166)
199 KOG2591 c-Mpl binding protein, 93.0 0.32 6.9E-06 46.8 7.0 99 163-291 146-248 (684)
200 KOG0804 Cytoplasmic Zn-finger 92.9 1 2.2E-05 42.5 9.9 68 215-284 74-142 (493)
201 PF15023 DUF4523: Protein of u 92.9 0.9 2E-05 36.2 8.1 74 108-189 82-159 (166)
202 KOG2135 Proteins containing th 92.8 0.12 2.7E-06 48.6 3.9 76 214-296 371-447 (526)
203 KOG2135 Proteins containing th 92.8 0.056 1.2E-06 50.8 1.7 72 114-192 374-446 (526)
204 PF04847 Calcipressin: Calcipr 92.5 0.35 7.6E-06 40.7 6.0 60 125-190 8-69 (184)
205 PF03880 DbpA: DbpA RNA bindin 91.5 0.74 1.6E-05 32.4 5.8 58 226-292 12-74 (74)
206 PF07292 NID: Nmi/IFP 35 domai 91.1 0.28 6.1E-06 35.9 3.4 73 157-237 1-74 (88)
207 PF11767 SET_assoc: Histone ly 91.0 1.7 3.6E-05 30.0 6.9 56 122-186 10-65 (66)
208 KOG2318 Uncharacterized conser 90.7 1.4 3E-05 42.9 8.4 81 107-187 169-301 (650)
209 KOG2253 U1 snRNP complex, subu 90.7 0.19 4.1E-06 49.3 2.7 121 109-239 37-159 (668)
210 KOG4574 RNA-binding protein (c 90.5 0.16 3.5E-06 51.1 2.1 75 217-297 300-376 (1007)
211 KOG4285 Mitotic phosphoprotein 90.4 0.52 1.1E-05 42.1 5.0 68 114-189 199-267 (350)
212 PF11767 SET_assoc: Histone ly 89.6 2.2 4.8E-05 29.4 6.6 55 226-289 11-65 (66)
213 KOG2253 U1 snRNP complex, subu 87.8 0.35 7.6E-06 47.5 2.3 72 212-292 37-108 (668)
214 PF10567 Nab6_mRNP_bdg: RNA-re 85.0 28 0.0006 31.3 12.3 166 112-278 15-212 (309)
215 PF03880 DbpA: DbpA RNA bindin 84.7 3.6 7.9E-05 28.9 5.7 59 122-189 11-74 (74)
216 KOG2318 Uncharacterized conser 80.2 8.3 0.00018 37.7 7.8 83 212-294 171-307 (650)
217 PF14111 DUF4283: Domain of un 77.8 3.4 7.3E-05 33.2 4.0 117 115-248 18-138 (153)
218 KOG4574 RNA-binding protein (c 77.6 2 4.2E-05 43.7 2.9 75 114-194 300-376 (1007)
219 smart00596 PRE_C2HC PRE_C2HC d 77.2 3.2 7E-05 28.7 3.1 66 230-298 2-68 (69)
220 KOG2891 Surface glycoprotein [ 76.9 1.5 3.2E-05 38.7 1.7 71 109-179 146-247 (445)
221 PF07530 PRE_C2HC: Associated 75.4 4.5 9.7E-05 28.1 3.5 65 230-297 2-67 (68)
222 PF07530 PRE_C2HC: Associated 74.3 7.1 0.00015 27.1 4.2 61 127-190 2-63 (68)
223 PF03468 XS: XS domain; Inter 71.0 6 0.00013 30.6 3.6 56 114-172 10-75 (116)
224 COG5638 Uncharacterized conser 70.5 23 0.00049 33.3 7.7 76 107-182 141-286 (622)
225 KOG4410 5-formyltetrahydrofola 70.0 30 0.00066 30.9 8.0 59 111-174 329-394 (396)
226 smart00596 PRE_C2HC PRE_C2HC d 67.1 12 0.00026 25.9 4.0 61 127-190 2-63 (69)
227 KOG4019 Calcineurin-mediated s 62.6 7.5 0.00016 32.3 2.8 78 216-299 11-94 (193)
228 KOG4410 5-formyltetrahydrofola 62.3 18 0.0004 32.2 5.2 57 216-278 331-395 (396)
229 KOG4483 Uncharacterized conser 62.3 27 0.00059 32.7 6.5 58 109-173 388-446 (528)
230 KOG4483 Uncharacterized conser 57.8 24 0.00052 33.1 5.4 64 215-286 391-455 (528)
231 PRK14548 50S ribosomal protein 57.6 44 0.00095 24.2 5.7 52 119-173 27-80 (84)
232 TIGR03636 L23_arch archaeal ri 53.5 60 0.0013 23.0 5.8 55 116-173 17-73 (77)
233 KOG2295 C2H2 Zn-finger protein 53.2 2.2 4.8E-05 41.3 -2.0 76 215-290 231-306 (648)
234 KOG2295 C2H2 Zn-finger protein 45.4 3.5 7.7E-05 40.0 -1.9 71 110-180 229-299 (648)
235 KOG1295 Nonsense-mediated deca 44.9 25 0.00055 32.7 3.5 70 111-180 6-78 (376)
236 PF02714 DUF221: Domain of unk 44.9 23 0.00049 32.4 3.3 36 260-297 1-36 (325)
237 KOG4365 Uncharacterized conser 43.1 6 0.00013 37.4 -0.8 76 114-190 5-80 (572)
238 PF02714 DUF221: Domain of unk 39.0 61 0.0013 29.5 5.2 56 157-237 1-56 (325)
239 PRK01178 rps24e 30S ribosomal 35.9 1.3E+02 0.0029 22.5 5.5 48 123-171 30-82 (99)
240 PF15513 DUF4651: Domain of un 35.1 97 0.0021 21.0 4.2 18 127-144 9-26 (62)
241 KOG2891 Surface glycoprotein [ 34.7 30 0.00065 30.8 2.2 84 213-296 147-269 (445)
242 COG5193 LHP1 La protein, small 33.2 24 0.00051 33.1 1.4 60 216-275 175-244 (438)
243 COG5193 LHP1 La protein, small 32.3 18 0.00039 33.9 0.5 63 110-172 172-244 (438)
244 KOG1295 Nonsense-mediated deca 27.3 92 0.002 29.2 4.2 68 215-282 7-77 (376)
245 KOG4365 Uncharacterized conser 27.1 9.9 0.00021 36.0 -2.1 78 216-294 4-81 (572)
246 PF07292 NID: Nmi/IFP 35 domai 25.7 97 0.0021 22.6 3.3 32 260-291 1-33 (88)
247 PF11823 DUF3343: Protein of u 25.5 80 0.0017 21.8 2.8 26 258-283 2-27 (73)
248 PF11823 DUF3343: Protein of u 25.3 1E+02 0.0022 21.3 3.3 30 155-184 2-31 (73)
249 COG0445 GidA Flavin-dependent 24.3 3.2E+02 0.007 27.3 7.4 103 155-265 237-343 (621)
250 PF10567 Nab6_mRNP_bdg: RNA-re 23.6 1.1E+02 0.0023 27.7 3.7 80 215-294 15-107 (309)
251 COG0030 KsgA Dimethyladenosine 23.3 1.1E+02 0.0025 27.1 3.9 37 112-148 95-131 (259)
252 KOG4213 RNA-binding protein La 23.3 98 0.0021 25.9 3.2 68 112-185 111-180 (205)
253 PF03439 Spt5-NGN: Early trans 23.2 1.2E+02 0.0026 21.7 3.4 28 151-178 41-68 (84)
254 PTZ00071 40S ribosomal protein 22.9 2.5E+02 0.0054 22.2 5.3 47 123-170 35-87 (132)
255 KOG4008 rRNA processing protei 20.8 1E+02 0.0022 27.0 2.9 34 107-140 35-68 (261)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.7e-34 Score=260.33 Aligned_cols=174 Identities=28% Similarity=0.477 Sum_probs=158.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
.....++|||+|||+++|+++|+++|+.||+|..|+|+.|..+++++|||||+|.++++|.+|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCH
Q 020607 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (323)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~ 267 (323)
++..... ....++|||+|||+.+++++|+++|++||.|..++|+.+..+|+++|+|||+|.+.
T Consensus 183 ~a~p~~~-----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 183 YARPGGE-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccccc-----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 8763211 11235799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEeCC--eeEEEEeecCCCCC
Q 020607 268 EDLQSALDAMNGVEVEG--RPLRLNMANERAPP 298 (323)
Q Consensus 268 e~A~~Al~~l~~~~i~g--~~l~V~~a~~~~~~ 298 (323)
++|.+|++.||+..+.| ++|+|.|++.....
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 99999999999999866 79999999886554
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.1e-33 Score=270.71 Aligned_cols=185 Identities=20% Similarity=0.401 Sum_probs=161.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|..||+|.+|++++|+.+|+++|||||+|.+.++|.+|++.+||..|+||.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHH
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e 268 (323)
+......... ...........++|||+|||+.+++++|+++|+.||.|..+++.++..+|+++|||||+|.+.+
T Consensus 184 p~~~p~a~~~------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 184 PSNMPQAQPI------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccccc------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 5422111100 0000111224578999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHhCCcEeCCeeEEEEeecCCCCCC
Q 020607 269 DLQSALDAMNGVEVEGRPLRLNMANERAPPV 299 (323)
Q Consensus 269 ~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~ 299 (323)
+|.+|++.|||..|+|+.|+|.++...+++.
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 9999999999999999999999999765543
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-32 Score=232.14 Aligned_cols=185 Identities=28% Similarity=0.476 Sum_probs=163.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
...-+||+.|...++-++|++.|.+||+|.+.++++|..|++++||+||.|.+.++|+.||..|||..|++|.|+-+|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHH
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A 270 (323)
.+. .+............+......++|||+|++..+++++|++.|+.||.|.+||++++ +|||||+|.++|.|
T Consensus 141 RKp-~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 141 RKP-SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAA 213 (321)
T ss_pred cCc-cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhH
Confidence 665 22222222223334444567899999999999999999999999999999999988 69999999999999
Q ss_pred HHHHHHhCCcEeCCeeEEEEeecCCCCCCCcc
Q 020607 271 QSALDAMNGVEVEGRPLRLNMANERAPPVLPA 302 (323)
Q Consensus 271 ~~Al~~l~~~~i~g~~l~V~~a~~~~~~~~~~ 302 (323)
.+||..+||..|.|+.|++.|.+...+.....
T Consensus 214 ahAIv~mNntei~G~~VkCsWGKe~~~~~~~~ 245 (321)
T KOG0148|consen 214 AHAIVQMNNTEIGGQLVRCSWGKEGDDGINNQ 245 (321)
T ss_pred HHHHHHhcCceeCceEEEEeccccCCCCCCch
Confidence 99999999999999999999999987765443
No 4
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.8e-33 Score=236.96 Aligned_cols=163 Identities=23% Similarity=0.343 Sum_probs=128.3
Q ss_pred ccCCCCCcCcCCCCCCCCCCCccCCCCCCcccccccccccccccccCCCCCcccCCCCCCCCccchhh------------
Q 020607 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEE------------ 92 (323)
Q Consensus 25 t~~~p~~l~~lf~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 92 (323)
|++||||||+||+|||||+|++|++++|+-.... .+.++++|++.+....+....-..+..++.-+
T Consensus 2 ~~~lp~nllaLF~pRpPl~y~pP~d~~p~kr~~~--~~tGvA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~ 79 (335)
T KOG0113|consen 2 TQFLPPNLLALFAPRPPLPYLPPTDKLPHKRKTN--PYTGVAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPH 79 (335)
T ss_pred CccCCccHHHhcCCCCCcccCCccccChhhccCC--CcccHHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHH
Confidence 7899999999999999999999999988754443 55677777777655443222211111111000
Q ss_pred ---hhhhhhhcccCcccccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHH
Q 020607 93 ---EEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169 (323)
Q Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~ 169 (323)
..-..|+. .....+..++++||||+.|+|+++|.+|++.|+.||+|++|+||+|+.||+++|||||+|+++.++..
T Consensus 80 ~~~~~l~~wdP-~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~ 158 (335)
T KOG0113|consen 80 KLERRLKLWDP-NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKA 158 (335)
T ss_pred HHHHHHHhcCC-CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHH
Confidence 00111222 33444667999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccCCeEEEEecCC
Q 020607 170 AIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 170 A~~~l~~~~~~gr~i~V~~a~ 190 (323)
|++..+|.+|+|+.|.|++-.
T Consensus 159 AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 159 AYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred HHHhccCceecCcEEEEEecc
Confidence 999999999999999999864
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=2.2e-31 Score=247.93 Aligned_cols=169 Identities=26% Similarity=0.524 Sum_probs=155.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+..+|||+|||+++++++|+++|..||+|..|+|++|+.+|+++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHH
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A 270 (323)
.... ....++|||+|||..+++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|
T Consensus 82 ~~~~-----------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A 144 (352)
T TIGR01661 82 PSSD-----------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEA 144 (352)
T ss_pred cccc-----------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHH
Confidence 3221 11246899999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHhCCcEeCC--eeEEEEeecCCC
Q 020607 271 QSALDAMNGVEVEG--RPLRLNMANERA 296 (323)
Q Consensus 271 ~~Al~~l~~~~i~g--~~l~V~~a~~~~ 296 (323)
.+|++.|||..+.| ++|.|.|+....
T Consensus 145 ~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 145 DRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 99999999999987 678888887654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=8.2e-31 Score=244.13 Aligned_cols=187 Identities=25% Similarity=0.421 Sum_probs=156.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC--eEEEEec
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNF 188 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g--r~i~V~~ 188 (323)
...+|||+|||..+++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|..|++.|||..+.| +.|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35579999999999999999999999999999999998889999999999999999999999999999987 6788888
Q ss_pred CCCCCCCccccCCC-----------C------------------------------------------------ccC---
Q 020607 189 PEVPRGGERAAMGP-----------K------------------------------------------------LQN--- 206 (323)
Q Consensus 189 a~~~~~~~~~~~~~-----------~------------------------------------------------~~~--- 206 (323)
+..+.......... . ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 75433110000000 0 000
Q ss_pred -------------CCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHH
Q 020607 207 -------------SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (323)
Q Consensus 207 -------------~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~A 273 (323)
........+.+|||+|||+.+++++|+++|++||.|..++|+++..+|.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0000011234699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEeCCeeEEEEeecCCCC
Q 020607 274 LDAMNGVEVEGRPLRLNMANERAP 297 (323)
Q Consensus 274 l~~l~~~~i~g~~l~V~~a~~~~~ 297 (323)
+..|||..|+||.|+|.|+..+..
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999999999999988764
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.9e-30 Score=249.76 Aligned_cols=183 Identities=30% Similarity=0.511 Sum_probs=159.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+.+++++|+++|..||.|..|+++.|+.+|+++|||||+|.+.++|.+|+. ++|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34557799999999999999999999999999999999999999999999999999999999997 89999999999998
Q ss_pred cCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCH
Q 020607 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (323)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~ 267 (323)
.+............ ..........+|||+|||+.+++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.
T Consensus 164 ~~~~~~~~~~~~~~-----~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 164 SSQAEKNRAAKAAT-----HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred ecchhhhhhhhccc-----ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 76543222211000 0011122368999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHhCCcEeCCeeEEEEeecCCC
Q 020607 268 EDLQSALDAMNGVEVEGRPLRLNMANERA 296 (323)
Q Consensus 268 e~A~~Al~~l~~~~i~g~~l~V~~a~~~~ 296 (323)
++|.+|++.|||..|.|++|.|.|+....
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQDST 267 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEccCCC
Confidence 99999999999999999999999988543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=7.6e-29 Score=244.36 Aligned_cols=169 Identities=27% Similarity=0.491 Sum_probs=152.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~ 193 (323)
+|||+|||+++||++|+++|++||+|.+|+|.+|..+++++|||||+|.+.++|.+|+..+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999875322
Q ss_pred CCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHH
Q 020607 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~A 273 (323)
... .....+|||+|||.++++++|+++|+.||.|..|++..+. +|+++|||||+|.+.++|.+|
T Consensus 82 ~~~---------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 82 SLR---------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred ccc---------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHH
Confidence 111 1123579999999999999999999999999999998875 788999999999999999999
Q ss_pred HHHhCCcEeCCeeEEEEeecCCCCC
Q 020607 274 LDAMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 274 l~~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
++.+||..+.|+.|.|.....+...
T Consensus 146 i~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 146 IQKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred HHHhcccEecCceEEEecccccccc
Confidence 9999999999999999876655443
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=6.1e-29 Score=222.68 Aligned_cols=169 Identities=27% Similarity=0.460 Sum_probs=151.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc-cC--CeEEEEecC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IG--GRTVKVNFP 189 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~-~~--gr~i~V~~a 189 (323)
-++|||.+|..++|.||+.+|++||.|.+|.|++|+.+|.++|||||.|.+.++|.+|+..||+.+ |. .+.|.|+++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 469999999999999999999999999999999999999999999999999999999999998776 43 479999998
Q ss_pred CCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHH
Q 020607 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~ 269 (323)
+..+... ....+|||+-|+..+||.+++++|++||.|++|.|+++. .|.+||||||.|.+.+.
T Consensus 115 d~E~er~----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~ 177 (510)
T KOG0144|consen 115 DGERERI----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEM 177 (510)
T ss_pred chhhhcc----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHH
Confidence 7544322 234689999999999999999999999999999999997 78999999999999999
Q ss_pred HHHHHHHhCCcE-eC--CeeEEEEeecCCCCC
Q 020607 270 LQSALDAMNGVE-VE--GRPLRLNMANERAPP 298 (323)
Q Consensus 270 A~~Al~~l~~~~-i~--g~~l~V~~a~~~~~~ 298 (323)
|..|++.|||.. +. ..+|.|+||....+.
T Consensus 178 A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 178 AVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 999999999965 44 479999999987664
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=4.1e-28 Score=239.15 Aligned_cols=186 Identities=31% Similarity=0.491 Sum_probs=157.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC----CeEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG----GRTV 184 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~----gr~i 184 (323)
....++|||+|||.++++++|+++|..||.|..+.+..+. +|+++|||||.|.+.++|.+|++.++|..+. |+.+
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999986 7999999999999999999999999999999 9999
Q ss_pred EEecCCCCCCCccccCCC-CccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEE
Q 020607 185 KVNFPEVPRGGERAAMGP-KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (323)
Q Consensus 185 ~V~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~ 263 (323)
.|.++............. ..............+|||+||++.+++++|+++|+.||.|..++++.+ .+|.++|||||+
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 998876443221100000 000001111234568999999999999999999999999999999998 589999999999
Q ss_pred eCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCC
Q 020607 264 FETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296 (323)
Q Consensus 264 F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~ 296 (323)
|.+.++|.+|+..|||..++|++|.|.||..+.
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 999999999999999999999999999998754
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.1e-27 Score=228.96 Aligned_cols=179 Identities=27% Similarity=0.454 Sum_probs=143.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC-CeEEEEecC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKVNFP 189 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~-gr~i~V~~a 189 (323)
..++|||+|||.+++|++|+++|++||.|..++|++| .+|+++|||||+|.+.++|.+|++.||+..+. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4578999999999999999999999999999999999 69999999999999999999999999998885 677666543
Q ss_pred CCCC---------C-C---------------------------cccc--------------------CCCCcc-------
Q 020607 190 EVPR---------G-G---------------------------ERAA--------------------MGPKLQ------- 205 (323)
Q Consensus 190 ~~~~---------~-~---------------------------~~~~--------------------~~~~~~------- 205 (323)
.... . . .... ......
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 2100 0 0 0000 000000
Q ss_pred --------CCCCCccCCCCeEEEecCCCCCCHHHHHHHhccC--CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHH
Q 020607 206 --------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275 (323)
Q Consensus 206 --------~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~--G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~ 275 (323)
..........++|||+||++.+++++|+++|++| |.|.+|.++ ++||||+|.+.++|.+|++
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHH
Confidence 0000011234689999999999999999999999 999998775 5699999999999999999
Q ss_pred HhCCcEeCCeeEEEEeecCCCCC
Q 020607 276 AMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 276 ~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
.|||..|.|+.|+|.|+++....
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcc
Confidence 99999999999999999876543
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=6.6e-27 Score=228.17 Aligned_cols=182 Identities=24% Similarity=0.370 Sum_probs=145.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcC------------CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCC
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAG------------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG 176 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G------------~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~ 176 (323)
....++|||+|||+.+|+++|+++|..++ .|..+.+ ++.+|||||+|.+.++|..|+. |+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 34567899999999999999999999862 3333333 4567999999999999999995 999
Q ss_pred cccCCeEEEEecCCCCCCCcccc-----CCCCc-------cCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccE
Q 020607 177 SQIGGRTVKVNFPEVPRGGERAA-----MGPKL-------QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS 244 (323)
Q Consensus 177 ~~~~gr~i~V~~a~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~ 244 (323)
..|.|+.|.|............. ..... ............+|||+|||+.+++++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 99999999998654322110000 00000 0011112345679999999999999999999999999999
Q ss_pred EEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCC
Q 020607 245 AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 297 (323)
Q Consensus 245 i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~ 297 (323)
+.++.+..+|.++|||||+|.+.++|..|++.|||..|+|+.|.|.++.....
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~ 377 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGAN 377 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCC
Confidence 99999999999999999999999999999999999999999999999876443
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=6.2e-28 Score=193.62 Aligned_cols=174 Identities=30% Similarity=0.527 Sum_probs=156.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+...||||+||+..++++.|.++|-+.|+|.++++.+|+.+...+||||++|.++++|..|++.||+.++.||+|+|+.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccE-EEEeeecCCCCcccEEEEEeCCH
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETA 267 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~-i~i~~~~~~g~~~g~afV~F~~~ 267 (323)
+...... ...+..+||+||...+++..|.+.|+.||.+.. -.++++..+|.++|+|||.|.+.
T Consensus 86 as~~~~n----------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 86 ASAHQKN----------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred ccccccc----------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 7611111 123368999999999999999999999998755 37889999999999999999999
Q ss_pred HHHHHHHHHhCCcEeCCeeEEEEeecCCCCC
Q 020607 268 EDLQSALDAMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 268 e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
+.+.+|+..+||+.+++++|+|+++..+...
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999999998775543
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.5e-27 Score=219.20 Aligned_cols=184 Identities=25% Similarity=0.441 Sum_probs=156.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~ 192 (323)
.||||++||++++.++|.++|+.+|+|..+.++.+..++.+||||||.|.-.+|+++|+...++..|+||.|.|+.+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999988899999999999999999999999999999999999998754
Q ss_pred CCCccccC------CCCccCCC---CCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEE
Q 020607 193 RGGERAAM------GPKLQNSY---QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (323)
Q Consensus 193 ~~~~~~~~------~~~~~~~~---~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~ 263 (323)
........ .....+.. .....+..+|.|+||||.+.+.+|+.+|+.||.|..|.|++... |+-.|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEE
Confidence 43331110 00011100 11123367899999999999999999999999999999997764 4445999999
Q ss_pred eCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCC
Q 020607 264 FETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 297 (323)
Q Consensus 264 F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~ 297 (323)
|....+|..|++.+|+.+|+||+|-|.||-++..
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 9999999999999999999999999999987654
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.4e-26 Score=224.30 Aligned_cols=185 Identities=19% Similarity=0.272 Sum_probs=150.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCCCCccccCCC----------CccC-CCCCccCCCCeEEEecCCCCC----------CHHHHHHHhccCCCccEEEEe
Q 020607 190 EVPRGGERAAMGP----------KLQN-SYQGFVDSPHKIYAGNLGWGL----------TSQGLRDAFQGQPGLLSAKVI 248 (323)
Q Consensus 190 ~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~l~V~nlp~~~----------t~~~L~~~F~~~G~v~~i~i~ 248 (323)
............. .... .......+..+|+|.|+.... ..++|+++|++||.|..|.|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 6433221111000 0000 001112356789999996431 246899999999999999998
Q ss_pred eec---CCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 249 FER---YTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 249 ~~~---~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
+.. .++.+.|+|||+|.+.++|.+|+..|||..|+|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 653 3456789999999999999999999999999999999999754
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=2.7e-26 Score=221.52 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=141.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh--CCcccCCeEEEEec
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF--DGSQIGGRTVKVNF 188 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l--~~~~~~gr~i~V~~ 188 (323)
+.++|||+|||+++++++|+++|+.||.|.+|.++.+ +|||||+|.+.++|.+|++.+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4679999999999999999999999999999999854 489999999999999999864 78899999999999
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHH
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e 268 (323)
+............ ..........+|+|+||++.+++++|+++|+.||.|.+|.++++. .+++|||+|.+.+
T Consensus 75 s~~~~~~~~~~~~-----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~ 145 (481)
T TIGR01649 75 STSQEIKRDGNSD-----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVN 145 (481)
T ss_pred cCCcccccCCCCc-----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHH
Confidence 8644322111000 000011223479999999999999999999999999999987654 2478999999999
Q ss_pred HHHHHHHHhCCcEeCC--eeEEEEeecCCC
Q 020607 269 DLQSALDAMNGVEVEG--RPLRLNMANERA 296 (323)
Q Consensus 269 ~A~~Al~~l~~~~i~g--~~l~V~~a~~~~ 296 (323)
+|.+|++.|||..|.| ++|+|.|++...
T Consensus 146 ~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 146 SAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 9999999999999964 689999998644
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.2e-27 Score=198.45 Aligned_cols=169 Identities=27% Similarity=0.538 Sum_probs=155.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
+..+.|.|.=||..+|+++|+.+|...|+|+.|++++|+.+|++.||+||.|.+++||.+|+..|||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHH
Q 020607 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~ 269 (323)
.+....- ....|||.+||..+|..+|.++|++||.|...+|+.|..+|.++|.|||+|....+
T Consensus 119 RPSs~~I-----------------k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 119 RPSSDSI-----------------KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred cCChhhh-----------------cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 7433222 23579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEeCC--eeEEEEeecCC
Q 020607 270 LQSALDAMNGVEVEG--RPLRLNMANER 295 (323)
Q Consensus 270 A~~Al~~l~~~~i~g--~~l~V~~a~~~ 295 (323)
|+.|+..|||..--| -+|.|+||...
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 999999999998766 57999998765
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=4.2e-26 Score=220.23 Aligned_cols=179 Identities=15% Similarity=0.238 Sum_probs=145.5
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+..+|||+|||. .+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|..|+..|||..|.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4667999999998 69999999999999999999998864 69999999999999999999999999999999998
Q ss_pred CCCCCCCcccc----------CCC---C-------ccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCC--ccEEE
Q 020607 189 PEVPRGGERAA----------MGP---K-------LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG--LLSAK 246 (323)
Q Consensus 189 a~~~~~~~~~~----------~~~---~-------~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~--v~~i~ 246 (323)
++......... ... . ..........+..+|||+|||..+++++|+++|+.||. +..++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 76432111100 000 0 00000111245678999999999999999999999998 77787
Q ss_pred EeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCee------EEEEeecCC
Q 020607 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP------LRLNMANER 295 (323)
Q Consensus 247 i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~------l~V~~a~~~ 295 (323)
+.... + ..+|+|||+|.+.++|.+|+..|||..|.|+. |+|.|++++
T Consensus 428 ~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 76543 2 35789999999999999999999999999985 999999875
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=208.19 Aligned_cols=184 Identities=23% Similarity=0.390 Sum_probs=148.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc-CCeEEEEec
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI-GGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~-~gr~i~V~~ 188 (323)
...+.||||.||.++.|++|.-+|++.|+|-+++|+.|+.+|.+||||||.|.+.+.|++|++.||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4456899999999999999999999999999999999999999999999999999999999999999987 588888866
Q ss_pred CCCCC---------CCc----------------------------cccC---------------CCCccCC---------
Q 020607 189 PEVPR---------GGE----------------------------RAAM---------------GPKLQNS--------- 207 (323)
Q Consensus 189 a~~~~---------~~~----------------------------~~~~---------------~~~~~~~--------- 207 (323)
+..+. ... +.+. ..+....
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 53110 000 0000 0000000
Q ss_pred ---C--------CCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 020607 208 ---Y--------QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (323)
Q Consensus 208 ---~--------~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 276 (323)
. ......-+.|||+||+.++|++.|+++|++||.|.+|+.+ +.||||.|.+.++|.+|++.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--------rDYaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--------RDYAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc--------cceeEEeecchHHHHHHHHH
Confidence 0 0001122579999999999999999999999999999877 45999999999999999999
Q ss_pred hCCcEeCCeeEEEEeecCCCCCCCc
Q 020607 277 MNGVEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 277 l~~~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
+||+.|.|..|.|.+|++......-
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred hcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999986665433
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2e-25 Score=205.27 Aligned_cols=191 Identities=25% Similarity=0.420 Sum_probs=156.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.-.|.|+|||+.+.+.+|+.+|+.||.|..|.|.+.. .|+-.|||||+|....+|..|++.+|+..|+||.|.|+|+
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 446789999999999999999999999999999999777 4555599999999999999999999999999999999997
Q ss_pred CCCCCCccc-------------------------------------------cCCC--------------CccC------
Q 020607 190 EVPRGGERA-------------------------------------------AMGP--------------KLQN------ 206 (323)
Q Consensus 190 ~~~~~~~~~-------------------------------------------~~~~--------------~~~~------ 206 (323)
-....-+.. .... ....
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 422110000 0000 0000
Q ss_pred --------CC--CCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 020607 207 --------SY--QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (323)
Q Consensus 207 --------~~--~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 276 (323)
.. ........+|||+||||.+|+++|.++|++||.|.++.++.++.||.++|.|||.|.+..+|..||..
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 00 11112347999999999999999999999999999999999999999999999999999999999997
Q ss_pred h-----CC-cEeCCeeEEEEeecCCCCCCCc
Q 020607 277 M-----NG-VEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 277 l-----~~-~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
. .| ..+.||.|.|..|-.+......
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHH
Confidence 6 34 7789999999999887766554
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=4.4e-24 Score=205.67 Aligned_cols=179 Identities=23% Similarity=0.360 Sum_probs=144.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
..+|||+|||+.+++++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 67899999999999999999999999999999999998999999999999999999999999999999999999999642
Q ss_pred CCCCccc------------------------------------cC--CCC-------------------cc---------
Q 020607 192 PRGGERA------------------------------------AM--GPK-------------------LQ--------- 205 (323)
Q Consensus 192 ~~~~~~~------------------------------------~~--~~~-------------------~~--------- 205 (323)
....... .. ... ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1100000 00 000 00
Q ss_pred -----CCC--CCccCCCCeEEEecCCCCCC----------HHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHH
Q 020607 206 -----NSY--QGFVDSPHKIYAGNLGWGLT----------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (323)
Q Consensus 206 -----~~~--~~~~~~~~~l~V~nlp~~~t----------~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e 268 (323)
... ........+|+|.|+....+ .+||++.|++||.|..+.+.. +...|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHH
Confidence 000 00123457899999955443 368999999999999998862 345799999999999
Q ss_pred HHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 269 DLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 269 ~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
+|.+|++.|||+.|+|+.|.|.|...
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99999999999999999999998754
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=3.3e-25 Score=189.82 Aligned_cols=152 Identities=26% Similarity=0.514 Sum_probs=140.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~ 193 (323)
.|||||||..+++.+|+.+|++||.|.++.|++ .||||..+++..+..|++.|+|.+|+|..|.|..++.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc-
Confidence 699999999999999999999999999999984 69999999999999999999999999999999987643
Q ss_pred CCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHH
Q 020607 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~A 273 (323)
....++|+|+|+.+.++.++|+..|++||.|.++.|. ++|+||.|...++|..|
T Consensus 75 ------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 ------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEA 128 (346)
T ss_pred ------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHH
Confidence 1244789999999999999999999999999999998 67999999999999999
Q ss_pred HHHhCCcEeCCeeEEEEeecCCCCCCC
Q 020607 274 LDAMNGVEVEGRPLRLNMANERAPPVL 300 (323)
Q Consensus 274 l~~l~~~~i~g~~l~V~~a~~~~~~~~ 300 (323)
+..|+|+.|.|++++|+++.++-.+..
T Consensus 129 ir~l~~~~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred HhcccccccccceeeeeeeccccccCC
Confidence 999999999999999999988766543
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2e-24 Score=182.31 Aligned_cols=185 Identities=30% Similarity=0.471 Sum_probs=156.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC--eEEEEecC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFP 189 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g--r~i~V~~a 189 (323)
...|||.+||..+|..+|+.+|++||.|..-+|+.|..+|.+||.+||.|....+|..|++.|||.+-.| ..|.|.++
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 4469999999999999999999999999999999999999999999999999999999999999998877 48999888
Q ss_pred CCCCCCcccc-------------CCC---C---c----------------c-----------CCCCCccCCCCeEEEecC
Q 020607 190 EVPRGGERAA-------------MGP---K---L----------------Q-----------NSYQGFVDSPHKIYAGNL 223 (323)
Q Consensus 190 ~~~~~~~~~~-------------~~~---~---~----------------~-----------~~~~~~~~~~~~l~V~nl 223 (323)
..+....... .++ . . + -..........+|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 6443221100 000 0 0 0 000111234579999999
Q ss_pred CCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCC
Q 020607 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296 (323)
Q Consensus 224 p~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~ 296 (323)
..++.+.-|.++|+.||.|..+++++|..+++.+|||||.+.+.++|..|+..|||..+++|.|.|+|...++
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987653
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=205.54 Aligned_cols=175 Identities=29% Similarity=0.437 Sum_probs=149.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCC---CCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 115 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
|||.||++++|.++|...|...|.|..+.|...+.. -.+.|||||+|.+.++|+.|++.|+|..++|+.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999999988655422 23569999999999999999999999999999999999882
Q ss_pred CCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHH
Q 020607 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~ 271 (323)
.+..... .... .....+.|+|+|+|+.++..+++++|..||.+..++++.....+-++|||||+|.++.+|.
T Consensus 598 k~~~~~g---K~~~-----~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~ 669 (725)
T KOG0110|consen 598 KPASTVG---KKKS-----KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAK 669 (725)
T ss_pred ccccccc---cccc-----cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHH
Confidence 2221111 1111 1122578999999999999999999999999999999987556677999999999999999
Q ss_pred HHHHHhCCcEeCCeeEEEEeecCCCC
Q 020607 272 SALDAMNGVEVEGRPLRLNMANERAP 297 (323)
Q Consensus 272 ~Al~~l~~~~i~g~~l~V~~a~~~~~ 297 (323)
+|+.+|.++++.||+|.++||.....
T Consensus 670 nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 670 NAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHhhcccceechhhheehhccchH
Confidence 99999999999999999999988654
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.6e-24 Score=190.65 Aligned_cols=182 Identities=20% Similarity=0.425 Sum_probs=156.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
-++||||.+.+...|+.|+..|..||+|+.|.+-+|..|++++|||||+|+-++.|..|++.+||..++||.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999986531
Q ss_pred CCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHH
Q 020607 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~ 271 (323)
-...... . ......-...++|||..+..+++++||+.+|+.||.|.+|.+.+++..+..+||+|++|.+.++-.
T Consensus 193 mpQAQpi-I-----D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 193 MPQAQPI-I-----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred CcccchH-H-----HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 1100000 0 000011123478999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHhCCcEeCCeeEEEEeecCCCCCC
Q 020607 272 SALDAMNGVEVEGRPLRLNMANERAPPV 299 (323)
Q Consensus 272 ~Al~~l~~~~i~g~~l~V~~a~~~~~~~ 299 (323)
.|+..||=+.++|+.|+|-.+-..+++.
T Consensus 267 eAiasMNlFDLGGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCVTPPDAL 294 (544)
T ss_pred HHhhhcchhhcccceEecccccCCCchh
Confidence 9999999999999999998776655543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.9e-23 Score=189.32 Aligned_cols=157 Identities=27% Similarity=0.517 Sum_probs=145.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~ 193 (323)
.|||| +++||..|.+.|+.+|+|..|++.+|. | +.|||||.|.++.+|.+|+..+|...+.|+.|++.|+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd- 75 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD- 75 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-
Confidence 68998 999999999999999999999999999 6 9999999999999999999999999999999999998632
Q ss_pred CCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHH
Q 020607 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~A 273 (323)
+..|||.||+..++..+|.++|+.||.|+.|++..+. .| ++|| ||+|.+.++|.+|
T Consensus 76 ---------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 76 ---------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKA 131 (369)
T ss_pred ---------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHH
Confidence 1239999999999999999999999999999999987 44 8999 9999999999999
Q ss_pred HHHhCCcEeCCeeEEEEeecCCCCCCCc
Q 020607 274 LDAMNGVEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 274 l~~l~~~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
+..+||..+.|++|.|.....+..+..+
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREAP 159 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhccc
Confidence 9999999999999999998887665433
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.88 E-value=4.9e-23 Score=190.41 Aligned_cols=190 Identities=28% Similarity=0.499 Sum_probs=163.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
.....+|+|+-.|+...++-+|.+||..+|.|..|+++.|+.+++++|.|||+|.+.+.+-.|+. |.|..+.|..|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 34556789999999999999999999999999999999999999999999999999999999996 89999999999999
Q ss_pred cCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCH
Q 020607 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (323)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~ 267 (323)
.....+..... ..+.... .....+...|||+||.+++++++|+.+|+.||.|..|.+..|..+|.++|||||+|.+.
T Consensus 254 ~sEaeknr~a~-~s~a~~~--k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 254 LSEAEKNRAAN-ASPALQG--KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ccHHHHHHHHh-ccccccc--cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 87655444111 1111110 11122233499999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEeCCeeEEEEeecCCCCCCCc
Q 020607 268 EDLQSALDAMNGVEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 268 e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
++|.+|+..|||..|.|+.|+|.....+.....+
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a 364 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTKEA 364 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccccc
Confidence 9999999999999999999999999888877655
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=7.4e-22 Score=177.37 Aligned_cols=189 Identities=30% Similarity=0.478 Sum_probs=157.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc-cCC--eEEEE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGG--RTVKV 186 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~-~~g--r~i~V 186 (323)
...++||||.|+..++|.+++++|.+||.|++|+|.+|. .+.+||||||.|.+.+.|..|++.|||.. +.| ..|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 447789999999999999999999999999999999998 89999999999999999999999999874 665 58999
Q ss_pred ecCCCCCCCccccC------------------------------------------------------------------
Q 020607 187 NFPEVPRGGERAAM------------------------------------------------------------------ 200 (323)
Q Consensus 187 ~~a~~~~~~~~~~~------------------------------------------------------------------ 200 (323)
++++..+.+.....
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 98862221100000
Q ss_pred ---------------C--------------C-------Ccc------------------------C--------------
Q 020607 201 ---------------G--------------P-------KLQ------------------------N-------------- 206 (323)
Q Consensus 201 ---------------~--------------~-------~~~------------------------~-------------- 206 (323)
. + ... .
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence 0 0 000 0
Q ss_pred -------------------------------------------------------CCCCccCCCCeEEEecCCCCCCHHH
Q 020607 207 -------------------------------------------------------SYQGFVDSPHKIYAGNLGWGLTSQG 231 (323)
Q Consensus 207 -------------------------------------------------------~~~~~~~~~~~l~V~nlp~~~t~~~ 231 (323)
........+..+||.+||.+.-+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 0000011235799999999999999
Q ss_pred HHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCCC
Q 020607 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPV 299 (323)
Q Consensus 232 L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~ 299 (323)
|-..|..||.|...++..|+.+|.++-|+||.|++..+|..||..|||..+++++++|++.+++.+|.
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np~ 508 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNPY 508 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998875
No 29
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.86 E-value=7.8e-22 Score=176.44 Aligned_cols=178 Identities=25% Similarity=0.441 Sum_probs=158.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..++|||++|+++++++.|+.+|.+||.|..+.+++|+.+++++||+||+|.+++...+++.. ....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 567899999999999999999999999999999999999999999999999999999999984 7889999999999876
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHH
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A 270 (323)
.......... .....+|||++||..++++++++.|.+||.|..+.++.|..+++++||+||.|.+.+.+
T Consensus 84 ~r~~~~~~~~-----------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sV 152 (311)
T KOG4205|consen 84 SREDQTKVGR-----------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSV 152 (311)
T ss_pred Cccccccccc-----------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccc
Confidence 5443332221 11456899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEeCCeeEEEEeecCCCCCCCc
Q 020607 271 QSALDAMNGVEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 271 ~~Al~~l~~~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
.+++. .+-+.|.|+.|.|..|.++..-..+
T Consensus 153 dkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 153 DKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ceecc-cceeeecCceeeEeeccchhhcccc
Confidence 99987 6889999999999999997765443
No 30
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.7e-21 Score=164.05 Aligned_cols=186 Identities=25% Similarity=0.415 Sum_probs=154.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc-cCC--eEEEEe
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGG--RTVKVN 187 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~-~~g--r~i~V~ 187 (323)
..++||||.|...-.|+|++++|..||.|.++.+.+.. .|.++|+|||.|.+--+|..||..|+|.. +-| ..+.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56689999999999999999999999999999999887 89999999999999999999999999875 334 578887
Q ss_pred cCCCCCCCcc----------------------------------------------------------------------
Q 020607 188 FPEVPRGGER---------------------------------------------------------------------- 197 (323)
Q Consensus 188 ~a~~~~~~~~---------------------------------------------------------------------- 197 (323)
+++..+....
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 7651110000
Q ss_pred ------------------------ccCCCC--------------------------------------------------
Q 020607 198 ------------------------AAMGPK-------------------------------------------------- 203 (323)
Q Consensus 198 ------------------------~~~~~~-------------------------------------------------- 203 (323)
......
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000000
Q ss_pred -----------cc------CCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCC
Q 020607 204 -----------LQ------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266 (323)
Q Consensus 204 -----------~~------~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~ 266 (323)
.. .........+|.|||..||.+..+.+|.+.|-.||.|...+++.|+-++.++-|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00 0000112356899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEeCCeeEEEEeecCCCC
Q 020607 267 AEDLQSALDAMNGVEVEGRPLRLNMANERAP 297 (323)
Q Consensus 267 ~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~ 297 (323)
+.+|..||.+|||..|+-++|+|++.+++..
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999998764
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=1.1e-19 Score=175.95 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..++|||+|||+++++++|+++|+.||.|.++++.++..+|+++|||||+|.+.++|.+|+..+|+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999998754
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=9e-21 Score=161.18 Aligned_cols=141 Identities=33% Similarity=0.599 Sum_probs=123.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+..+||||+||..++||+-|..+|.+.|+|.+++|+.+ .++|.+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 456789999999999999999999999999999999865 567777
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHH
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e 268 (323)
+..+....... ......+||+.|...++-++||+.|.+||.|.+++|++|..+++++|||||.|-+.+
T Consensus 48 a~~p~nQsk~t------------~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 48 ATAPGNQSKPT------------SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred ccCcccCCCCc------------cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 76542211111 112457999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEeCCeeEEEEeecCCC
Q 020607 269 DLQSALDAMNGVEVEGRPLRLNMANERA 296 (323)
Q Consensus 269 ~A~~Al~~l~~~~i~g~~l~V~~a~~~~ 296 (323)
+|+.||..|||..|++|.|+-.||..++
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCc
Confidence 9999999999999999999999999887
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.8e-20 Score=169.08 Aligned_cols=167 Identities=30% Similarity=0.495 Sum_probs=147.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCCC
Q 020607 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRG 194 (323)
Q Consensus 115 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~~ 194 (323)
|||.||+.+++...|.++|+.||.|..|++..+. .| ++|| ||+|.+++.|++|+..+||..+.|+.|.|........
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999998 44 9999 9999999999999999999999999999987654332
Q ss_pred CccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHH
Q 020607 195 GERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (323)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al 274 (323)
....... .......++|.|++...+++.|..+|..+|.|..+.++.+. .|+++||+||.|.++++|..|+
T Consensus 156 r~~~~~~---------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av 225 (369)
T KOG0123|consen 156 REAPLGE---------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAV 225 (369)
T ss_pred hcccccc---------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHH
Confidence 2211111 12234679999999999999999999999999999999887 5669999999999999999999
Q ss_pred HHhCCcEeCCeeEEEEeecC
Q 020607 275 DAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 275 ~~l~~~~i~g~~l~V~~a~~ 294 (323)
+.||+..++|..+.|..+..
T Consensus 226 ~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 226 ETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred HhccCCcCCccceeeccccc
Confidence 99999999999999988877
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=6.2e-19 Score=142.14 Aligned_cols=174 Identities=22% Similarity=0.306 Sum_probs=137.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++|||+|||.++.+.+|+++|-+||.|..|.+... .....||||+|++..+|..|+.--+|..++|++|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45678999999999999999999999999999998543 234589999999999999999999999999999999998
Q ss_pred CCCCCCccccCCC---------CccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEE
Q 020607 190 EVPRGGERAAMGP---------KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260 (323)
Q Consensus 190 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~a 260 (323)
............. ..............+|.|.+||.+.+++||+++..+-|.|+...+.+| |++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 7543222111100 000011222334578999999999999999999999999999998866 589
Q ss_pred EEEeCCHHHHHHHHHHhCCcEe--CCeeEEEEeec
Q 020607 261 FVTFETAEDLQSALDAMNGVEV--EGRPLRLNMAN 293 (323)
Q Consensus 261 fV~F~~~e~A~~Al~~l~~~~i--~g~~l~V~~a~ 293 (323)
.|+|...++.+-|+..|....+ .|-+..+..-.
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred eeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 9999999999999999988766 45554444433
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=2e-18 Score=144.24 Aligned_cols=177 Identities=21% Similarity=0.366 Sum_probs=144.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHH----HHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAE----VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~----~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
..+..||||.||+..+..++|++ +|++||.|..|.... +.+.||.|||.|.+.+.|-.|++.|+|..+.|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34566999999999999999988 999999998887763 67899999999999999999999999999999999
Q ss_pred EEecCCCCCCCccccC-------------------CCCccCC----------C----CCccCCCCeEEEecCCCCCCHHH
Q 020607 185 KVNFPEVPRGGERAAM-------------------GPKLQNS----------Y----QGFVDSPHKIYAGNLGWGLTSQG 231 (323)
Q Consensus 185 ~V~~a~~~~~~~~~~~-------------------~~~~~~~----------~----~~~~~~~~~l~V~nlp~~~t~~~ 231 (323)
+|.++..+...-.... .+..... . .....+...+++.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 9999874332111100 0000000 0 12245667899999999999999
Q ss_pred HHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC-CeeEEEEeec
Q 020607 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE-GRPLRLNMAN 293 (323)
Q Consensus 232 L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~-g~~l~V~~a~ 293 (323)
|..+|.+|.+...++++... .+.|||+|.+...|..|.+.+.|..|. ...+.|.+++
T Consensus 163 l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999998654 689999999999999999999998886 8888888765
No 36
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=1.6e-17 Score=146.03 Aligned_cols=185 Identities=17% Similarity=0.267 Sum_probs=147.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeE
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~ 183 (323)
...|||.|||.++|-+++.++|.+||-|.+ |.+.++. .|+.+|-|.+.|-..+++..|++.|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 446999999999999999999999997753 7788777 5999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccCCCCc-c--------------------CCCCCccCCCCeEEEecCCC----CCC-------HHH
Q 020607 184 VKVNFPEVPRGGERAAMGPKL-Q--------------------NSYQGFVDSPHKIYAGNLGW----GLT-------SQG 231 (323)
Q Consensus 184 i~V~~a~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~l~V~nlp~----~~t-------~~~ 231 (323)
|+|.+|.....++........ . ..........++|.++|+-. ..+ .++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 999998755443322211100 0 01122234568999999832 223 557
Q ss_pred HHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCCCCc
Q 020607 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 232 L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
|++-+.+||.|..|.|. ...+.|.+.|.|.+.++|..|++.|+|+.|+||.|..+.+..+..-++.
T Consensus 293 l~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~e 358 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQTE 358 (382)
T ss_pred HHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeeee
Confidence 77889999999999887 3356789999999999999999999999999999999998887665443
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=9.2e-18 Score=153.78 Aligned_cols=173 Identities=20% Similarity=0.273 Sum_probs=136.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.....|.+++||+++|++||.+||+.++ |+++.+.+ .+|++.|-|||+|.+++++++|+++ +...+..|-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 3455799999999999999999999994 77755554 4699999999999999999999995 999999999999877
Q ss_pred CCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHH
Q 020607 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~ 269 (323)
............ ......+...|.+++|||.||++||.+||...-.|....++.....|++.|-|||.|.+.+.
T Consensus 84 ~~~e~d~~~~~~------g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 84 GGAEADWVMRPG------GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred CCccccccccCC------CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 543332111100 00001345689999999999999999999988555553445555578899999999999999
Q ss_pred HHHHHHHhCCcEeCCeeEEEEeec
Q 020607 270 LQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 270 A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
|++|+. -|...|+-|-|.|-.+.
T Consensus 158 ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 158 AEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHHH-HHHHhhccceEEeehhH
Confidence 999998 48888999999887643
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=2.4e-18 Score=159.52 Aligned_cols=179 Identities=24% Similarity=0.336 Sum_probs=136.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+...|+||||.+++++++|+..|+.||.|..|.+.+|..||+++|||||+|.+.++|++|+..|||..+.||.|+|..-.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999996532
Q ss_pred CCCCCccc-------------cC--CCCc----------------c-------------------C-----CCC------
Q 020607 191 VPRGGERA-------------AM--GPKL----------------Q-------------------N-----SYQ------ 209 (323)
Q Consensus 191 ~~~~~~~~-------------~~--~~~~----------------~-------------------~-----~~~------ 209 (323)
........ .. .... . + ...
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 11100000 00 0000 0 0 000
Q ss_pred -CccCCCCeEEEecCCC--CC--------CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 020607 210 -GFVDSPHKIYAGNLGW--GL--------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (323)
Q Consensus 210 -~~~~~~~~l~V~nlp~--~~--------t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~ 278 (323)
....+..++.+.|+=. .. -.+|+.+-|.+||.|..|.+-+.. -|+.||.|.+.+.|..|+.+||
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-----~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-----AGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-----CceEEEecCcHHHHHHHHHHHh
Confidence 0012334566666622 11 245888899999999988875332 4999999999999999999999
Q ss_pred CcEeCCeeEEEEeecC
Q 020607 279 GVEVEGRPLRLNMANE 294 (323)
Q Consensus 279 ~~~i~g~~l~V~~a~~ 294 (323)
|++|.|+.|...|-.-
T Consensus 512 grWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 512 GRWFAGRMITAKYLPL 527 (549)
T ss_pred hhhhccceeEEEEeeh
Confidence 9999999999998644
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=1.1e-17 Score=135.32 Aligned_cols=87 Identities=43% Similarity=0.733 Sum_probs=81.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|++|++.||+..|.|++|+|+|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 293 NERAPPV 299 (323)
Q Consensus 293 ~~~~~~~ 299 (323)
..+....
T Consensus 112 ~~~~~~~ 118 (144)
T PLN03134 112 NDRPSAP 118 (144)
T ss_pred CcCCCCC
Confidence 8776543
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=4.9e-17 Score=146.66 Aligned_cols=182 Identities=18% Similarity=0.362 Sum_probs=146.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
...+.+||.||||++.+.+|+++|.. .|+|..|.++.|. .|++||+|.|+|++++.+++|++.|+...+.||.|.|.-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34556999999999999999999985 8999999999998 999999999999999999999999999999999999965
Q ss_pred CCCCCCCc----------------------------------------cccCCCCcc--------C--------------
Q 020607 189 PEVPRGGE----------------------------------------RAAMGPKLQ--------N-------------- 206 (323)
Q Consensus 189 a~~~~~~~----------------------------------------~~~~~~~~~--------~-------------- 206 (323)
........ ....+.... +
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 32100000 000000000 0
Q ss_pred -----CCCC-ccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 020607 207 -----SYQG-FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (323)
Q Consensus 207 -----~~~~-~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~ 280 (323)
.... ..+-..++||.||.+.+....|++.|.-.|.+..+.+-.++ .|.++|+|.++|.++-+|.+||..+++.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC
Confidence 0000 12234689999999999999999999999999999998888 4688999999999999999999999998
Q ss_pred EeCCeeEEEEeec
Q 020607 281 EVEGRPLRLNMAN 293 (323)
Q Consensus 281 ~i~g~~l~V~~a~ 293 (323)
.+..++..+.+.+
T Consensus 280 g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 280 GLFDRRMTVRLDR 292 (608)
T ss_pred CCccccceeeccc
Confidence 8888888887743
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.6e-17 Score=133.15 Aligned_cols=85 Identities=35% Similarity=0.611 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|++||.|.++.++.|..+++++|||||+|.+.++|.+|++.+|+..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 020607 189 PEVPR 193 (323)
Q Consensus 189 a~~~~ 193 (323)
+....
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87543
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=9.4e-18 Score=141.58 Aligned_cols=162 Identities=25% Similarity=0.498 Sum_probs=134.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~ 193 (323)
.+||++||+.+.+.+|+.+|..||.|..+.+. .||+||+|.+..+|..|+..+|+..|.|-++.|.++....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 58999999999999999999999999998885 3889999999999999999999999999999998887543
Q ss_pred CCccccC--CCC-ccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHH
Q 020607 194 GGERAAM--GPK-LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (323)
Q Consensus 194 ~~~~~~~--~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A 270 (323)
....... ... ............+.+.|.|+...+.+++|.++|..+|.+..... .++++||+|...++|
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDA 146 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhh
Confidence 3221111 111 12223333456688999999999999999999999999955444 368999999999999
Q ss_pred HHHHHHhCCcEeCCeeEEEEe
Q 020607 271 QSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 271 ~~Al~~l~~~~i~g~~l~V~~ 291 (323)
.+|+..|+|..+.|+.|.+..
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhcchhccchhhcCceeeecc
Confidence 999999999999999999944
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=3.2e-16 Score=149.24 Aligned_cols=180 Identities=24% Similarity=0.320 Sum_probs=138.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
.....+.++|+|||..+..++|...|..||+|.+|.+. + .| -.|+|+|.+..+|++|++.|....+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-cc---ceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 34556789999999999999999999999999998543 2 22 249999999999999999999999998888887
Q ss_pred cCCCCCCC-----cc--ccCCCC---------ccC------CC-----------CCccCCCCeEEEecCCCCCCHHHHHH
Q 020607 188 FPEVPRGG-----ER--AAMGPK---------LQN------SY-----------QGFVDSPHKIYAGNLGWGLTSQGLRD 234 (323)
Q Consensus 188 ~a~~~~~~-----~~--~~~~~~---------~~~------~~-----------~~~~~~~~~l~V~nlp~~~t~~~L~~ 234 (323)
|+...... .. ...... ... .. .......++|||+||+|.++.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 76422111 00 000000 000 00 00112234599999999999999999
Q ss_pred HhccCCCccEEEEeeecCCC---CcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 235 AFQGQPGLLSAKVIFERYTG---RSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 235 ~F~~~G~v~~i~i~~~~~~g---~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
+|..+|.|..+.|...+..- .+.|||||+|.+.++|.+|++.|+|+.|+|+.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999887654221 245999999999999999999999999999999999999
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.68 E-value=7.3e-16 Score=137.24 Aligned_cols=165 Identities=28% Similarity=0.460 Sum_probs=125.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
..+|||+|||+++++++|.++|..||.|..+.+..++.+|+++|||||+|.+.++|..|+..+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999653
Q ss_pred --CCCCccc-----cCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEe
Q 020607 192 --PRGGERA-----AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264 (323)
Q Consensus 192 --~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F 264 (323)
....... ...................+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111110 000111122223344567899999999999999999999999996666654443333344444555
Q ss_pred CCHHHHHHHHHH
Q 020607 265 ETAEDLQSALDA 276 (323)
Q Consensus 265 ~~~e~A~~Al~~ 276 (323)
.....+..+...
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 555555554443
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=1.2e-15 Score=107.88 Aligned_cols=70 Identities=34% Similarity=0.715 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 115 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
|||+|||.++++++|+++|++||.|..+.+..+ .+++++|||||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999985
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.4e-15 Score=107.50 Aligned_cols=70 Identities=40% Similarity=0.693 Sum_probs=67.3
Q ss_pred EEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 218 l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
|||+|||..+++++|+++|++||.+..+.+..+ .++..+|+|||+|.+.++|.+|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6889999999999999999999999999999999986
No 47
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.64 E-value=6.6e-15 Score=132.08 Aligned_cols=174 Identities=19% Similarity=0.317 Sum_probs=140.1
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 112 AARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 112 ~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..+|.|.||.. .+|.+-|..+|+-||.|.+|.|.+++ +-.|.|+|.+...|.-|+..|+|..|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 56789999885 59999999999999999999999887 3679999999999999999999999999999999886
Q ss_pred CCCCC------ccccC------------CCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecC
Q 020607 191 VPRGG------ERAAM------------GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY 252 (323)
Q Consensus 191 ~~~~~------~~~~~------------~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~ 252 (323)
-..-. +.... ......+......+..+|++.|+|..+++++|+..|...|........
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf---- 447 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF---- 447 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----
Confidence 22211 11000 001111222233566799999999999999999999999888766554
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe-eEEEEeecC
Q 020607 253 TGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR-PLRLNMANE 294 (323)
Q Consensus 253 ~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~-~l~V~~a~~ 294 (323)
.++.+.+|++.+.+.++|..|+-.+|++.+++. .++|+|.+.
T Consensus 448 f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 448 FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 234577999999999999999999999999776 999999875
No 48
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.9e-15 Score=141.97 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=144.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
......+||++||...++.+++++...||++....++.|..+|.++||||.+|.+......|+..|||..++++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccCC-----CCccCC--CCCccCCCCeEEEecCCC----------CCCHHHHHHHhccCCCccEEEEeeec
Q 020607 189 PEVPRGGERAAMG-----PKLQNS--YQGFVDSPHKIYAGNLGW----------GLTSQGLRDAFQGQPGLLSAKVIFER 251 (323)
Q Consensus 189 a~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~l~V~nlp~----------~~t~~~L~~~F~~~G~v~~i~i~~~~ 251 (323)
+............ ...... .+....+...|++.|+-. .---++++.-|.+||.|..|.+.+..
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 7644332221111 000000 122223344556665521 11234677788999999999988772
Q ss_pred CC---CCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 252 YT---GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 252 ~~---g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
.. ..+.|..||+|.+.+++++|.++|+|+.|.||.|...|-..
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 22 34568899999999999999999999999999999988643
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=3.7e-15 Score=131.86 Aligned_cols=183 Identities=16% Similarity=0.237 Sum_probs=139.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
...+.+|||..+..+.+|+||+..|+.||+|..|.+-++..++.++||+||+|.+......|+..+|-..++|..++|-.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 34577899999999999999999999999999999999998899999999999999999999999999999999999965
Q ss_pred CCCCCCCcc-----------------------------------------------------------------------
Q 020607 189 PEVPRGGER----------------------------------------------------------------------- 197 (323)
Q Consensus 189 a~~~~~~~~----------------------------------------------------------------------- 197 (323)
+-.++..--
T Consensus 287 ~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~ 366 (544)
T KOG0124|consen 287 CVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVIT 366 (544)
T ss_pred ccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceec
Confidence 431111000
Q ss_pred --ccCCCCccCCC------------------------------------------------------------CCccCCC
Q 020607 198 --AAMGPKLQNSY------------------------------------------------------------QGFVDSP 215 (323)
Q Consensus 198 --~~~~~~~~~~~------------------------------------------------------------~~~~~~~ 215 (323)
....+..+... -......
T Consensus 367 ~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S 446 (544)
T KOG0124|consen 367 GVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQES 446 (544)
T ss_pred cCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccC
Confidence 00000000000 0001123
Q ss_pred CeEEEecC--CCCC---CHHHHHHHhccCCCccEEEEeeecCCCCc----ccEEEEEeCCHHHHHHHHHHhCCcEeCCee
Q 020607 216 HKIYAGNL--GWGL---TSQGLRDAFQGQPGLLSAKVIFERYTGRS----RGFGFVTFETAEDLQSALDAMNGVEVEGRP 286 (323)
Q Consensus 216 ~~l~V~nl--p~~~---t~~~L~~~F~~~G~v~~i~i~~~~~~g~~----~g~afV~F~~~e~A~~Al~~l~~~~i~g~~ 286 (323)
+.+.++|+ |.++ -+.+|++.|++||.|.++.|...+.++.- ----||+|....++.+|.++|+|+.|+||+
T Consensus 447 ~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~ 526 (544)
T KOG0124|consen 447 TVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRK 526 (544)
T ss_pred cEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCce
Confidence 56778887 3333 35688999999999999988766644421 224799999999999999999999999999
Q ss_pred EEEEe
Q 020607 287 LRLNM 291 (323)
Q Consensus 287 l~V~~ 291 (323)
|..+.
T Consensus 527 VvAE~ 531 (544)
T KOG0124|consen 527 VVAEV 531 (544)
T ss_pred eehhh
Confidence 98764
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.61 E-value=2.3e-14 Score=119.21 Aligned_cols=168 Identities=18% Similarity=0.284 Sum_probs=123.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC-CceeEEEEEECCHHHHHHHHHHhCCcccC---CeEEEE
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTVKV 186 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afv~F~~~~~a~~A~~~l~~~~~~---gr~i~V 186 (323)
.-+||||.+||.++...+|..+|+.|---+...+.+....+ -.+-+||+.|.+..+|.+|++.|||..|+ +..+++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 45799999999999999999999998666666665433222 23579999999999999999999999996 788999
Q ss_pred ecCCCCCCCccccC-CCCccC------------C----------------------CC----------------------
Q 020607 187 NFPEVPRGGERAAM-GPKLQN------------S----------------------YQ---------------------- 209 (323)
Q Consensus 187 ~~a~~~~~~~~~~~-~~~~~~------------~----------------------~~---------------------- 209 (323)
++++......+... ...... . ..
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 88864332211110 000000 0 00
Q ss_pred ------------CccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 020607 210 ------------GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (323)
Q Consensus 210 ------------~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l 277 (323)
.......+|||-||..++++++|+.+|+.|.+...++|.-. . ..-.||++|++.+.|..|+..|
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHh
Confidence 00001258999999999999999999999977766666422 2 2457999999999999999999
Q ss_pred CCcEe
Q 020607 278 NGVEV 282 (323)
Q Consensus 278 ~~~~i 282 (323)
.|..|
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 98876
No 51
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=3.8e-15 Score=137.20 Aligned_cols=84 Identities=24% Similarity=0.397 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+++++++|+++|+.||.|..|+|+.+..+|+++|||||+|.+.++|.+|++.||+..+.|++|+|.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 020607 293 NERA 296 (323)
Q Consensus 293 ~~~~ 296 (323)
++..
T Consensus 185 ~p~~ 188 (346)
T TIGR01659 185 RPGG 188 (346)
T ss_pred cccc
Confidence 7643
No 52
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6.7e-15 Score=123.99 Aligned_cols=83 Identities=29% Similarity=0.444 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+...+|.|.||+.+++|.+|+++|.+||+|.+|.+.+|+.||.++|||||.|.+.++|.+|+..|||.-+++-.|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 020607 189 PEV 191 (323)
Q Consensus 189 a~~ 191 (323)
+++
T Consensus 266 skP 268 (270)
T KOG0122|consen 266 SKP 268 (270)
T ss_pred cCC
Confidence 874
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=8.9e-15 Score=103.66 Aligned_cols=70 Identities=37% Similarity=0.701 Sum_probs=65.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 115 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
|||+|||+++++++|+++|..||.|..+++..++. |+++|+|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 99999999999999999999999999999999885
No 54
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.7e-15 Score=125.12 Aligned_cols=80 Identities=29% Similarity=0.549 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..++||||+|++.+..+.|+++|++||+|.+..++.|+.+|+++|||||+|.+.+.|.+|++. -+-+|+||+..++++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 456799999999999999999999999999999999999999999999999999999999996 5678999999999987
Q ss_pred C
Q 020607 191 V 191 (323)
Q Consensus 191 ~ 191 (323)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=1.4e-14 Score=102.57 Aligned_cols=70 Identities=39% Similarity=0.639 Sum_probs=65.0
Q ss_pred EEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 218 l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
|+|+|||+.+++++|+++|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|++.++|..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999985
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=9.6e-15 Score=123.06 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=80.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|.|.||+.++++++|+++|.+||.|.++.+.+++.+|.++|||||.|.+.++|.+||..|||.-++.--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 020607 293 NER 295 (323)
Q Consensus 293 ~~~ 295 (323)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=4.7e-15 Score=124.47 Aligned_cols=82 Identities=34% Similarity=0.553 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+||+|.+..+.|+++|++||.|++..|+.|+.+|+++|||||+|++.+.|.+|++. -+-.|+||+..+.+|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 347899999999999999999999999999999999999999999999999999999999984 5677999999999876
Q ss_pred CCC
Q 020607 294 ERA 296 (323)
Q Consensus 294 ~~~ 296 (323)
-.+
T Consensus 90 lg~ 92 (247)
T KOG0149|consen 90 LGG 92 (247)
T ss_pred hcC
Confidence 633
No 58
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.56 E-value=2.8e-14 Score=138.30 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=100.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc--CCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..++|||+||++++++++|+++|+.| |.|++|.++ ++||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999999875 36999999999999999999999999999999999
Q ss_pred CCCCCCCccc-----c------CCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccE
Q 020607 189 PEVPRGGERA-----A------MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS 244 (323)
Q Consensus 189 a~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~ 244 (323)
+......... . ......+-.........+++++|+++..+++.+.++|..+|.+..
T Consensus 304 Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 304 AKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred ccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccccC
Confidence 9764332110 0 000111111222345688999999999999999999999987643
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=127.51 Aligned_cols=83 Identities=33% Similarity=0.587 Sum_probs=77.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
...+++|+|.|+|+...+.||+.+|++||.|.+|.|+.+. .-+||||||+|++.++|++|-++|||..|.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4567899999999999999999999999999999999875 45799999999999999999999999999999999999
Q ss_pred ecCCC
Q 020607 292 ANERA 296 (323)
Q Consensus 292 a~~~~ 296 (323)
|..+-
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 98873
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=7.1e-16 Score=124.25 Aligned_cols=83 Identities=28% Similarity=0.562 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
-....-||||||||..||.||.-.|++||.|.+|.+++|+.||+++||||+.|++.++...|+..|||..|.||.|+|+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 020607 189 PEV 191 (323)
Q Consensus 189 a~~ 191 (323)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 653
No 61
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.54 E-value=1.7e-14 Score=128.47 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=131.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----CCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEA----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
.-.|..++||+++++.++..||..- |..+.|-++... .|+..|-|||.|..+++|..|+.+ |...++.|.|.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 3468889999999999999999742 345566666655 799999999999999999999996 8788888888775
Q ss_pred cCCCCC-------------CC-ccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccE---EEEeee
Q 020607 188 FPEVPR-------------GG-ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS---AKVIFE 250 (323)
Q Consensus 188 ~a~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~---i~i~~~ 250 (323)
.+.... .. .....................+|.+++|||.++.+||.+||+.|..-.+ +.+..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 543100 00 0000011111111122233578999999999999999999998854322 555555
Q ss_pred cCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 251 RYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 251 ~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
. .|++.|-|||+|.+.+.|..|....|++...+|.|.|--+
T Consensus 319 ~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 319 G-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred C-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 4 7899999999999999999999999998888999988653
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=6.4e-14 Score=121.21 Aligned_cols=87 Identities=20% Similarity=0.512 Sum_probs=82.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
.++-+||||.-|++.++|..|+..|+.||.|..|+++++..+|+++|||||+|++.-+..+|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 020607 292 ANERAPP 298 (323)
Q Consensus 292 a~~~~~~ 298 (323)
-+.+..+
T Consensus 178 ERgRTvk 184 (335)
T KOG0113|consen 178 ERGRTVK 184 (335)
T ss_pred ccccccc
Confidence 8877654
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.52 E-value=1.8e-14 Score=118.51 Aligned_cols=87 Identities=34% Similarity=0.559 Sum_probs=81.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
.+....|.|.||-+.++.++|+.+|++||.|.+|.|..|..++.++|||||.|....+|+.|+++|+|.+++|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 020607 292 ANERAPP 298 (323)
Q Consensus 292 a~~~~~~ 298 (323)
|+=..++
T Consensus 90 arygr~~ 96 (256)
T KOG4207|consen 90 ARYGRPS 96 (256)
T ss_pred hhcCCCc
Confidence 8865553
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=6.7e-14 Score=121.39 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
.++|||+|||+.+++++|+++|+.||.|.+|+|+.+.. ++|||||+|.++++|..|+. |+|..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998762 57999999999999999996 899999999999998763
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.3e-13 Score=119.61 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=72.8
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..|+. |||..|.|+.|+|.+++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999999987753 47999999999999999996 999999999999999986
Q ss_pred CCCC
Q 020607 295 RAPP 298 (323)
Q Consensus 295 ~~~~ 298 (323)
-..|
T Consensus 80 ~~~p 83 (260)
T PLN03120 80 YQLP 83 (260)
T ss_pred CCCC
Confidence 5443
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=6.4e-14 Score=122.65 Aligned_cols=83 Identities=33% Similarity=0.599 Sum_probs=76.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
..+..++|+|.|||+...+.||+.+|++||.|.+|.|+-+. ..+||||||+|++.+||++|..+|||..+.||+|.|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34455689999999999999999999999999999999886 6789999999999999999999999999999999999
Q ss_pred cCCCC
Q 020607 188 FPEVP 192 (323)
Q Consensus 188 ~a~~~ 192 (323)
.+...
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98754
No 67
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=3.5e-14 Score=116.81 Aligned_cols=86 Identities=33% Similarity=0.539 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+.-.+|.|-||-|.++.++|+.+|++||.|-+|.|.+|..|+.++|||||-|....+|+.|+..|+|..++|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
|.....
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 874443
No 68
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=3e-14 Score=133.19 Aligned_cols=82 Identities=35% Similarity=0.718 Sum_probs=78.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~ 192 (323)
..|||||+||++++++|..+|...|+|..++++.|+.+|+++||||++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CC
Q 020607 193 RG 194 (323)
Q Consensus 193 ~~ 194 (323)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 69
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=6.6e-14 Score=112.42 Aligned_cols=78 Identities=28% Similarity=0.515 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
-.+.|||+||+..+++.||+..|..||+|..|.|-.++ .|||||+|++..||..|+..|||..|.|.+|+|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46789999999999999999999999999999997654 7999999999999999999999999999999999987
Q ss_pred CCC
Q 020607 191 VPR 193 (323)
Q Consensus 191 ~~~ 193 (323)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 443
No 70
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.2e-14 Score=122.99 Aligned_cols=86 Identities=24% Similarity=0.393 Sum_probs=81.4
Q ss_pred ccccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 105 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
......|..+|||..|++-++.++|.-+|+.||.|..+.+++|..||.+..||||+|++.+++.+|+-.|++..|+.|+|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC
Q 020607 185 KVNFPE 190 (323)
Q Consensus 185 ~V~~a~ 190 (323)
.|+++.
T Consensus 312 HVDFSQ 317 (479)
T KOG0415|consen 312 HVDFSQ 317 (479)
T ss_pred Eeehhh
Confidence 999875
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=1.2e-12 Score=118.49 Aligned_cols=78 Identities=29% Similarity=0.486 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.....+||+||.+.+....|++.|.-.|.|..|.+-.|+ -|.++|+|.|+|.++-.|..|+..+++.-+..++..++.
T Consensus 213 Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 213 PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred CccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 345579999999999999999999999999999999998 679999999999999999999999998776667666654
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.4e-13 Score=104.85 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.....||||+||++.++|++|.++|.++|+|++|.|=.|+.+..+=|||||+|-..++|..|++.++|..++.+.|++++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34567999999999999999999999999999999999998888999999999999999999999999999999999998
Q ss_pred CCC
Q 020607 189 PEV 191 (323)
Q Consensus 189 a~~ 191 (323)
...
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 653
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.9e-13 Score=125.44 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCH--HHHHHHHHHhCCcccCCeEEEEec
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV--EEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~--~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
...+||||||++.+++++|+..|..||.|.+|.|+ +.+| ||||||+|... .++.+|+..|||..|.||.|+|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34689999999999999999999999999999999 4467 89999999987 789999999999999999999998
Q ss_pred CC
Q 020607 189 PE 190 (323)
Q Consensus 189 a~ 190 (323)
++
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 75
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=4.6e-13 Score=94.09 Aligned_cols=72 Identities=40% Similarity=0.759 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
+|+|+|||..+++++|+++|..||+|..+.+..+. +.++|+|||+|.+.++|.+|+..+++..+.|+.+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7889999999999999999999999999999999874
No 75
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.46 E-value=2.3e-12 Score=115.97 Aligned_cols=179 Identities=16% Similarity=0.254 Sum_probs=134.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC--eEEEEecCCC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFPEV 191 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g--r~i~V~~a~~ 191 (323)
+++|+++-|.++-+-|...|++||.|.+|.-.... ..-.|.|+|.+...|..|...|+|..|.. +.+++++++-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 68899999999999999999999999887665322 22349999999999999999999998743 6778877641
Q ss_pred CC----------C-CccccC--C------------------------CCccCC------C-CCccC--CCCeEEEecCC-
Q 020607 192 PR----------G-GERAAM--G------------------------PKLQNS------Y-QGFVD--SPHKIYAGNLG- 224 (323)
Q Consensus 192 ~~----------~-~~~~~~--~------------------------~~~~~~------~-~~~~~--~~~~l~V~nlp- 224 (323)
.. . -..... + ...... . ..... ..+.|.|.||.
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 00 0 000000 0 000000 0 00001 14678888886
Q ss_pred CCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCCCCc
Q 020607 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 225 ~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
+.+|.+-|..+|+-||.|.+|+|+..+ +.-|.|+|.+...|.-|++.|+|..+.|++|+|.+++........
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~ 379 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPR 379 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCC
Confidence 458999999999999999999999776 467999999999999999999999999999999999986654333
No 76
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=3.6e-13 Score=94.64 Aligned_cols=72 Identities=38% Similarity=0.702 Sum_probs=67.4
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 217 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
+|+|+|||..++.++|+++|..||.+..+.+..+. +.++|+|||+|.+.++|.+|++.++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 7788999999999999999999999999999999874
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5.2e-13 Score=98.05 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=72.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
+.....|||+|||+.+|.++..++|++||.|..|+|--.+ ..+|.|||-|++..+|.+|+..|+|..+.++.+.|-|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3445789999999999999999999999999999986554 3489999999999999999999999999999999999
Q ss_pred ecCC
Q 020607 292 ANER 295 (323)
Q Consensus 292 a~~~ 295 (323)
..+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7763
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.9e-14 Score=116.02 Aligned_cols=86 Identities=27% Similarity=0.521 Sum_probs=80.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
...-|||+|||+.+|+.||.-+|++||.|++|.+++|+.||+++||||+.|++.-+..-|+.-|||..|.||.|+|.-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCC
Q 020607 294 ERAPPV 299 (323)
Q Consensus 294 ~~~~~~ 299 (323)
.-..|.
T Consensus 114 ~Yk~pk 119 (219)
T KOG0126|consen 114 NYKKPK 119 (219)
T ss_pred cccCCc
Confidence 666654
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=6.3e-13 Score=97.62 Aligned_cols=80 Identities=26% Similarity=0.454 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....+.|||+|||+++|.+++.++|++||+|..|+|-.. ...+|-|||.|++..+|++|+..|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 344568999999999999999999999999999999543 45689999999999999999999999999999999988
Q ss_pred CCC
Q 020607 189 PEV 191 (323)
Q Consensus 189 a~~ 191 (323)
...
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 763
No 80
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.3e-13 Score=103.73 Aligned_cols=79 Identities=23% Similarity=0.480 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+++|||+||.+.++|++|.++|+++|.|..|.+-.|+.+..+=|||||+|-+.++|..|++-+||+.++.++|++.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4589999999999999999999999999999999889888888999999999999999999999999999999999984
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=3e-13 Score=124.18 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCH--HHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA--EDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~--e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
...+|||+||++.+++++|+.+|..||.|..+.|+ +.+| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34689999999999999999999999999999998 4466 89999999987 789999999999999999999999
Q ss_pred ecC
Q 020607 292 ANE 294 (323)
Q Consensus 292 a~~ 294 (323)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 876
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=8.6e-13 Score=92.34 Aligned_cols=71 Identities=39% Similarity=0.714 Sum_probs=67.3
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 117 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
|+|||..+++++|+++|..||.|..+.+..+..+++++|||||+|.+.++|..|+..+++..+.|+.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999999999999874
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.4e-13 Score=104.55 Aligned_cols=86 Identities=24% Similarity=0.403 Sum_probs=79.9
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
..+-..-.|||.++...++|++|.+.|..||+|++|.+-.|+.||..+|||+|+|++.++|++|+..+||..+.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34444557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 020607 187 NFPEVP 192 (323)
Q Consensus 187 ~~a~~~ 192 (323)
+|+-..
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 998644
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=5.6e-13 Score=93.28 Aligned_cols=71 Identities=41% Similarity=0.728 Sum_probs=67.1
Q ss_pred EecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 220 V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
|+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|++.+++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999888788999999999999999999999999999999999874
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=8.2e-13 Score=112.85 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
...+|||+||++.+|+++|+++|+.||.|.+|+|+++ ++.+|+|||+|.++++|..|+. |+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3468999999999999999999999999999999988 4556899999999999999996 89999999999998765
Q ss_pred C
Q 020607 191 V 191 (323)
Q Consensus 191 ~ 191 (323)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 86
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.9e-13 Score=107.99 Aligned_cols=79 Identities=32% Similarity=0.500 Sum_probs=72.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+||+..+++.+|..+|..||.+..|-|-..+ .|||||+|+++-+|..|+..|+|+.|+|.+|+|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 35899999999999999999999999999888776544 7999999999999999999999999999999999987
Q ss_pred CCCC
Q 020607 294 ERAP 297 (323)
Q Consensus 294 ~~~~ 297 (323)
.+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6554
No 87
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.7e-12 Score=116.73 Aligned_cols=123 Identities=22% Similarity=0.324 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCC
Q 020607 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241 (323)
Q Consensus 162 ~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~ 241 (323)
.+++++.++|-.-. |..|.|.-...+-...... .........+.|||+.||.++.|++|.-+|++.|.
T Consensus 42 ~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~-------weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~ 109 (506)
T KOG0117|consen 42 QSEEAALKALLERT-----GYTLVVENGQRKYGGPPPG-------WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK 109 (506)
T ss_pred ccHHHHHHHHHHhc-----CceEEEeccccccCCCCCc-------ccCCCCCCCceEEecCCCccccchhhHHHHHhccc
Confidence 34667777765433 4556665443222221111 11122356789999999999999999999999999
Q ss_pred ccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe-CCeeEEEEeecCCC
Q 020607 242 LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV-EGRPLRLNMANERA 296 (323)
Q Consensus 242 v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i-~g~~l~V~~a~~~~ 296 (323)
|-+++++.|+.+|.+||||||+|.+.++|+.|++.||+..| .|+.|.|+.+..+.
T Consensus 110 I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~ 165 (506)
T KOG0117|consen 110 IYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANC 165 (506)
T ss_pred eeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecc
Confidence 99999999999999999999999999999999999999988 68999988776543
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=9.8e-13 Score=123.85 Aligned_cols=185 Identities=26% Similarity=0.458 Sum_probs=148.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc-----------C-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEA-----------G-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~-----------G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~ 177 (323)
.....++|+++|..++++.+..+|..- | .+..+.+ ...+++|||+|.+.++|..|+. +++.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~-~~~~ 245 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMA-LDGI 245 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhc-ccch
Confidence 345679999999999999999999763 2 2444444 3445899999999999999997 7999
Q ss_pred ccCCeEEEEecCCCCCCCccccCCC------CccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeec
Q 020607 178 QIGGRTVKVNFPEVPRGGERAAMGP------KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251 (323)
Q Consensus 178 ~~~gr~i~V~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~ 251 (323)
.+.|+.+++................ .............+.++|+|||..+++.+++++...||.+....++.+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 9999999998765333222211111 1111222334566899999999999999999999999999999999999
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCCCCc
Q 020607 252 YTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 252 ~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
.+|.++||||.+|.++.....|+..|||..++++++.|+.|-........
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~ 375 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANV 375 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccc
Confidence 99999999999999999999999999999999999999998776654433
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.9e-12 Score=110.60 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=72.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
...+|+|+||++.+|+++|+++|+.||.|.+|+++.+. ..+++|||+|.+.++|..|+. |||..|.|++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999874 446899999999999999995 99999999999999877
Q ss_pred CCCCC
Q 020607 294 ERAPP 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
.-..+
T Consensus 80 ~y~~~ 84 (243)
T PLN03121 80 QYEDE 84 (243)
T ss_pred ccccC
Confidence 64443
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.2e-13 Score=112.08 Aligned_cols=89 Identities=31% Similarity=0.512 Sum_probs=83.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++||||+|...++|.-|...|-.||.|..|.+..|-.+++.||||||+|...+||.+|+..+|+..+.||.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcc
Q 020607 189 PEVPRGGER 197 (323)
Q Consensus 189 a~~~~~~~~ 197 (323)
+.+.+..+.
T Consensus 87 AkP~kikeg 95 (298)
T KOG0111|consen 87 AKPEKIKEG 95 (298)
T ss_pred cCCccccCC
Confidence 987665543
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=5.1e-12 Score=89.21 Aligned_cols=74 Identities=42% Similarity=0.784 Sum_probs=69.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987744 7789999999999999999999999999999999864
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=8.9e-13 Score=101.41 Aligned_cols=85 Identities=24% Similarity=0.433 Sum_probs=81.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
....|||.++...+++++|.+.|..||.|..+.+-.|..+|..+|||+|+|.+.++|++|+..+||..+-|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020607 294 ERAPP 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
-++++
T Consensus 151 v~gp~ 155 (170)
T KOG0130|consen 151 VKGPE 155 (170)
T ss_pred ecCCc
Confidence 87774
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=4.5e-12 Score=89.48 Aligned_cols=74 Identities=39% Similarity=0.705 Sum_probs=68.7
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 217 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
+|+|+|||+.+++++|+++|..+|.+..+.+..+..+ .++|+|||+|.+.++|..|++.+++..+.|+++.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877644 6789999999999999999999999999999999875
No 94
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=1.1e-12 Score=122.71 Aligned_cols=82 Identities=33% Similarity=0.661 Sum_probs=79.9
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~ 295 (323)
+.|||+|+|+.+++++|..+|+..|.|..+++..|..+|+++||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 020607 296 AP 297 (323)
Q Consensus 296 ~~ 297 (323)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 66
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.34 E-value=1.2e-12 Score=105.87 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=77.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
...+|||+||+..++++.|.++|-+.|.|.++++.++..++..+|||||+|.+.++|+-|++.||...+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C
Q 020607 294 E 294 (323)
Q Consensus 294 ~ 294 (323)
.
T Consensus 88 ~ 88 (203)
T KOG0131|consen 88 A 88 (203)
T ss_pred c
Confidence 3
No 96
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.34 E-value=4.9e-12 Score=112.47 Aligned_cols=80 Identities=38% Similarity=0.716 Sum_probs=77.3
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
.++|||+|||+.+++++|+++|..||.+..+.+..+..+|.++|+|||+|.+.++|..|+..++|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999764
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.34 E-value=1.9e-11 Score=108.97 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=136.4
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH--hCCcccCCeEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL--FDGSQIGGRTV 184 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~--l~~~~~~gr~i 184 (323)
....+...|.|++|-..++|.+|.+.++.||+|..+..+..+ ..|.|+|++.+.|+.++.. -+...+.|+..
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchh
Confidence 345667789999999999999999999999999988876543 6899999999999998863 24567889999
Q ss_pred EEecCCCCCCCccccCCCCccCCCCCccCCCCeE--EEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEE
Q 020607 185 KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI--YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262 (323)
Q Consensus 185 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV 262 (323)
.++++......+.... ...+...| -|-|--|.+|.+-|..++...|.|.+|.|++.. .-.|.|
T Consensus 100 l~NyStsq~i~R~g~e----------s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmV 164 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDE----------SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMV 164 (494)
T ss_pred hcccchhhhhccCCCC----------CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEE
Confidence 9998864433332211 01122333 445667889999999999999999999998662 346999
Q ss_pred EeCCHHHHHHHHHHhCCcEe--CCeeEEEEeecCCCCCCC
Q 020607 263 TFETAEDLQSALDAMNGVEV--EGRPLRLNMANERAPPVL 300 (323)
Q Consensus 263 ~F~~~e~A~~Al~~l~~~~i--~g~~l~V~~a~~~~~~~~ 300 (323)
+|++.+.|++|...|||..| +-++|+|+||++..-.+.
T Consensus 165 EFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~ 204 (494)
T KOG1456|consen 165 EFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQ 204 (494)
T ss_pred eechhHHHHHHHhhcccccccccceeEEEEecCcceeeee
Confidence 99999999999999999888 559999999998554443
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=6.7e-12 Score=84.77 Aligned_cols=56 Identities=36% Similarity=0.650 Sum_probs=51.0
Q ss_pred HHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 232 L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
|+++|++||.|..+.+.... +++|||+|.+.++|..|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987553 589999999999999999999999999999999996
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-12 Score=108.93 Aligned_cols=83 Identities=34% Similarity=0.540 Sum_probs=79.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||++|...+++.-|...|-.||.|.+|.++.|-.+++.||||||+|.-.++|.+|+.-||+..+.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 020607 294 ERA 296 (323)
Q Consensus 294 ~~~ 296 (323)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 743
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.31 E-value=4.6e-11 Score=110.19 Aligned_cols=178 Identities=22% Similarity=0.267 Sum_probs=130.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....+|.+++||+.||++||.+||...-.+.. |.++.+. .+++.|-|||+|++.+.|++|+.. |...|+.|-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 45678999999999999999999998755555 4455555 788999999999999999999996 88999999999976
Q ss_pred CCCCC---------------------CCcccc------CC----------------------------C----------C
Q 020607 189 PEVPR---------------------GGERAA------MG----------------------------P----------K 203 (323)
Q Consensus 189 a~~~~---------------------~~~~~~------~~----------------------------~----------~ 203 (323)
+.... ...+.. .. . .
T Consensus 179 Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~ 258 (510)
T KOG4211|consen 179 SSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPN 258 (510)
T ss_pred hHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccc
Confidence 53000 000000 00 0 0
Q ss_pred ccC--CC---------CCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHH
Q 020607 204 LQN--SY---------QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (323)
Q Consensus 204 ~~~--~~---------~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~ 272 (323)
... .. .........++.++||+..++.+|..+|+.. ....+.|-... +|+..|-|+|+|.+.++|..
T Consensus 259 ~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~-dGr~TGEAdveF~t~edav~ 336 (510)
T KOG4211|consen 259 YPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGP-DGRATGEADVEFATGEDAVG 336 (510)
T ss_pred cCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCC-CCccCCcceeecccchhhHh
Confidence 000 00 0001122578999999999999999999865 34466665544 79999999999999999999
Q ss_pred HHHHhCCcEeCCeeEEEEee
Q 020607 273 ALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 273 Al~~l~~~~i~g~~l~V~~a 292 (323)
|+. -++..+..+-|.+...
T Consensus 337 Ams-kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 337 AMG-KDGANMGHRYVELFLN 355 (510)
T ss_pred hhc-cCCcccCcceeeeccc
Confidence 997 4888888888877664
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3e-11 Score=112.10 Aligned_cols=162 Identities=16% Similarity=0.266 Sum_probs=116.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecC-CC--CCcee---EEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VT--DRSRG---FGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~--~~~~g---~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
-.+.||||+||.+++|+.|...|..||.+. |...... .. --++| |+|+.|+++..+..-+..+.. .....
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 355799999999999999999999999874 4443211 11 13456 999999999998887775432 22322
Q ss_pred EEecCCCCCCCccccC------CCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhc-cCCCccEEEEeeecCCCCcc
Q 020607 185 KVNFPEVPRGGERAAM------GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSR 257 (323)
Q Consensus 185 ~V~~a~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~-~~G~v~~i~i~~~~~~g~~~ 257 (323)
.+.++...-....... +...-.......++.+||||++||.-++.++|-.+|+ -||.|+.+-|=.|++-+.++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 2222221111110000 0011111334467789999999999999999999998 89999999999998888999
Q ss_pred cEEEEEeCCHHHHHHHHHH
Q 020607 258 GFGFVTFETAEDLQSALDA 276 (323)
Q Consensus 258 g~afV~F~~~e~A~~Al~~ 276 (323)
|-|-|+|.+.+.-.+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999974
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=9.7e-12 Score=88.04 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=55.6
Q ss_pred HHHHHHHhc----cCCCccEEE-EeeecCC--CCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 229 SQGLRDAFQ----GQPGLLSAK-VIFERYT--GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 229 ~~~L~~~F~----~~G~v~~i~-i~~~~~~--g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
+++|+++|+ .||.|..+. +..+..+ |.++|+|||+|.+.++|.+|++.|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 6666666 8999999999999999999999999999999999863
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.4e-11 Score=87.16 Aligned_cols=61 Identities=31% Similarity=0.452 Sum_probs=56.0
Q ss_pred HHHHHHHHH----hcCCceEEE-EeecCCC--CCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 126 SSSLAEVFA----EAGTVASAE-IVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 126 e~~l~~~F~----~~G~i~~v~-i~~~~~~--~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
+++|+++|+ .||.|.+|. ++.++.+ ++++|||||.|.+.++|.+|++.|||..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999996 7777766 999999999999999999999999999999999986
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.29 E-value=5.5e-12 Score=112.90 Aligned_cols=181 Identities=20% Similarity=0.267 Sum_probs=147.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
....+.|++++...+.+.+...++..+|......+........++|++++.|...+.+..|+...-...+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45778999999999999999999999998888888776667899999999999999999999864435666766666655
Q ss_pred CCCCCCccccCCCCccCCCCCccCCCCeEE-EecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHH
Q 020607 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIY-AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e 268 (323)
....... .............+++ |+|+++.+++++|+.+|..+|.|..+++..+..+|..+|+|+|.|....
T Consensus 166 ~~~~~~~-------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 166 TRRGLRP-------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccccccc-------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 4332100 0001111122334555 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEeCCeeEEEEeecCCCCC
Q 020607 269 DLQSALDAMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 269 ~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
.+..++.. ....++|+++.+.+..+++..
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 99999987 899999999999999887665
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.22 E-value=7.5e-10 Score=98.86 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=133.8
Q ss_pred ccCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 107 AASDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
.-..+..+++|.+|... ++-+.|-++|..||.|.+|.+++.+ .|-|.|++.+....++|+..||+..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34456778999999976 6678899999999999999999877 58999999999999999999999999999999
Q ss_pred EecCCCCCCCcc--------------------ccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCc-cE
Q 020607 186 VNFPEVPRGGER--------------------AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL-LS 244 (323)
Q Consensus 186 V~~a~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v-~~ 244 (323)
|.+++..-.... .+..............+.+.|+.-|.|..+||+.|.++|...+.. ..
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 988763322111 111111112234445678899999999999999999999876533 45
Q ss_pred EEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 245 AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 245 i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
++++.-+ + ....-+.++|++.++|..||..+|...|.+
T Consensus 437 vkvFp~k-s-erSssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 437 VKVFPLK-S-ERSSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EEeeccc-c-cccccceeeeehHHHHHHHHHHhccccccC
Confidence 5666554 2 223468999999999999999999999866
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=3.9e-11 Score=80.97 Aligned_cols=56 Identities=39% Similarity=0.722 Sum_probs=50.6
Q ss_pred HHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 129 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
|.++|++||.|.+|.+..+. +++|||+|.+.++|..|++.|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997554 699999999999999999999999999999999874
No 107
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.21 E-value=4.1e-11 Score=99.07 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=77.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhc-CCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
.......++|+.+|.-+.+.++..+|.+| |.+.++++-+++.||.++|||||+|++++.|+-|.+.||+..+.|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556789999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 020607 187 NFPEV 191 (323)
Q Consensus 187 ~~a~~ 191 (323)
.+-..
T Consensus 125 ~vmpp 129 (214)
T KOG4208|consen 125 HVMPP 129 (214)
T ss_pred EEeCc
Confidence 88653
No 108
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=2.8e-11 Score=98.12 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||..+.+.+|.++|.+||.|..|.+.... ....||||+|+++-+|..||..-+|..++|++|+|++++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45899999999999999999999999999999875332 335799999999999999999999999999999999988
Q ss_pred CCC
Q 020607 294 ERA 296 (323)
Q Consensus 294 ~~~ 296 (323)
.-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 753
No 109
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5.9e-12 Score=104.67 Aligned_cols=149 Identities=23% Similarity=0.367 Sum_probs=127.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
.....+||||+|+...++|+-|.++|-+.|+|.+|.|..++ .++.+ ||||.|+++-...-|++.+||..+.++.+.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34556799999999999999999999999999999998877 56665 99999999999999999999999999999886
Q ss_pred cCCCCCCCccccCCCCccCCCCCccCCCCeEEEec----CCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEE
Q 020607 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGN----LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (323)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----lp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~ 263 (323)
++.++ |...++++.+...|+.-|.+..+++..+. +|+++.++|+.
T Consensus 83 ------------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~ 131 (267)
T KOG4454|consen 83 ------------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVT 131 (267)
T ss_pred ------------------------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchh
Confidence 33444 66678999999999999999999998877 48899999999
Q ss_pred eCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 264 FETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 264 F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
+-.....-.++....+....-+++.+
T Consensus 132 ~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 132 YQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhhhhcCcHHhhhhcccCcCCCCccc
Confidence 98888888888887876665554443
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=5.7e-12 Score=122.75 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=129.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
..++||+||++.+.+.+|...|..+|.+..+++......++.||+||++|..++++.+|+.. +...+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhh----------
Confidence 34799999999999999999999999988888875566799999999999999999999985 4333333
Q ss_pred CCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHH
Q 020607 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~ 271 (323)
...++|.|.|+..|.+.++.+|.++|.+...+++... .|+++|.|+|.|.+..+|.
T Consensus 736 -----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 736 -----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADAS 791 (881)
T ss_pred -----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhh
Confidence 1469999999999999999999999999999876665 7999999999999999999
Q ss_pred HHHHHhCCcEeCCeeEEEEeecC
Q 020607 272 SALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 272 ~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
+++...++..+.-+-+.|..+.+
T Consensus 792 ~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 792 RKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhcccchhhhhhhcCccccccCC
Confidence 99998888888888888877555
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.12 E-value=1.7e-10 Score=96.99 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCCCCHHHHHH----HhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRD----AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~----~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
+..+|||.||+..+..++|+. +|++||.|.+|.... +.+.+|-|||.|.+.+.|..|+..|+|..+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 334999999999999999998 999999999998774 4578999999999999999999999999999999999
Q ss_pred EeecCCCCCCCc
Q 020607 290 NMANERAPPVLP 301 (323)
Q Consensus 290 ~~a~~~~~~~~~ 301 (323)
+||..+.+-...
T Consensus 85 qyA~s~sdii~~ 96 (221)
T KOG4206|consen 85 QYAKSDSDIIAQ 96 (221)
T ss_pred ecccCccchhhc
Confidence 999998875544
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.11 E-value=7.3e-11 Score=100.32 Aligned_cols=168 Identities=27% Similarity=0.425 Sum_probs=133.2
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 114 RLYVGNLPYSMTSSS-L--AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 114 ~lfV~nLp~~~te~~-l--~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..|++++-.++..+- | ...|..|-....-.++++. .+.-++++|+.|.....-.++-..-+++++.-+.|+.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 466666666555544 3 5677777777777777776 67788999999998888778777767777777776654433
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHH
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A 270 (323)
.... ...........+||++.|..+++.+-|-..|.+|-.....++++++.+|+++||+||.|.+..++
T Consensus 177 swed-----------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 177 SWED-----------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred ccCC-----------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 2221 11222345568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEeCCeeEEEEeec
Q 020607 271 QSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 271 ~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
.+|+..|+|..++.+.|++.-..
T Consensus 246 ~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred HHHHHhhcccccccchhHhhhhh
Confidence 99999999999999999886533
No 113
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.1e-10 Score=101.73 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=81.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
.++.+.|||..|.+-++.+||.-+|+.||.|..|.|++|..+|.+-.||||+|.+.+++.+|.-.|++..|++++|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 020607 292 ANERAP 297 (323)
Q Consensus 292 a~~~~~ 297 (323)
+++-+.
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 877544
No 114
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.07 E-value=2.3e-10 Score=99.10 Aligned_cols=78 Identities=22% Similarity=0.445 Sum_probs=72.6
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~ 295 (323)
.+|||+|||..+++.+|+.+|++||.|.+|.|+ +.||||..++...|..|+..|||-.|.|.-|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999999 679999999999999999999999999999999999998
Q ss_pred CCCCCc
Q 020607 296 APPVLP 301 (323)
Q Consensus 296 ~~~~~~ 301 (323)
..+...
T Consensus 75 sk~stk 80 (346)
T KOG0109|consen 75 SKASTK 80 (346)
T ss_pred CCCccc
Confidence 655444
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.06 E-value=8.7e-10 Score=98.75 Aligned_cols=177 Identities=18% Similarity=0.177 Sum_probs=123.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+....|..++||+..++.+|..+|...-...-.+.+-....|+..|.|.|.|.+.+.-..|++. +...+.+|.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 44556788899999999999999998753332222222233578889999999999999999997 88889999999987
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccC----CCccEEEEeeecCCCCcccEEEEEe
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ----PGLLSAKVIFERYTGRSRGFGFVTF 264 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~----G~v~~i~i~~~~~~g~~~g~afV~F 264 (323)
+.....-.-........ ..-......-.|.+++||+++++.|+.+||... |.++.+.+++.. +|+..|-|||.|
T Consensus 136 a~ge~f~~iagg~s~e~-~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEA-APFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCccccC-CCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEe
Confidence 65332211111000000 000001223468899999999999999999744 244555555443 799999999999
Q ss_pred CCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 265 ETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 265 ~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
...++|..|+.. |...++-|.|.+
T Consensus 214 a~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 214 ACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred cCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 999999999984 656666555544
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=8.1e-10 Score=97.95 Aligned_cols=75 Identities=27% Similarity=0.415 Sum_probs=68.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHh-CCcEeCCeeEEEEee
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM-NGVEVEGRPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~l~V~~a 292 (323)
.-.+|||+||...+++.+|+++|.+||.|..+++... +++|||+|.+.+.|+.|...+ |...|.|++|.|.|+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4478999999999999999999999999999999855 579999999999999988766 778889999999999
Q ss_pred cC
Q 020607 293 NE 294 (323)
Q Consensus 293 ~~ 294 (323)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 98
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.01 E-value=9.4e-10 Score=91.09 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=74.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccC-CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~-G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
.....++|..+|..+-+.++..+|.++ |.|..+++-+...||.++|||||+|++.+.|.-|.+.||+..+.|+.|.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345679999999999999999999999 6667777779999999999999999999999999999999999999999988
Q ss_pred ecCC
Q 020607 292 ANER 295 (323)
Q Consensus 292 a~~~ 295 (323)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6554
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.96 E-value=2.4e-09 Score=103.62 Aligned_cols=111 Identities=20% Similarity=0.324 Sum_probs=87.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.--.+|||||.|+..++|.+|..+|+.||.|.+|.++.. +|+|||.+.+-.+|.+|+.+|++..+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 345779999999999999999999999999999999765 59999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhc
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ 237 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~ 237 (323)
+-....... ... .-...+=|.-+||.--..+|+.++.
T Consensus 492 a~g~G~kse-~k~-----------~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 492 AVGKGPKSE-YKD-----------YWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eccCCcchh-hhh-----------hhhcccCeeEeehHhcCHHHHHhhh
Confidence 875433320 000 0001234556788766666777774
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=5.4e-10 Score=109.65 Aligned_cols=169 Identities=20% Similarity=0.307 Sum_probs=140.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
.+....++||+|||+..+++.+|+..|..+|.|.+|.|-.-. .+.-.-||||.|.+...+-.|...+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 344567799999999999999999999999999999997654 4555579999999999999999888888876555555
Q ss_pred ecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCC
Q 020607 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266 (323)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~ 266 (323)
.+... .....+.+++++|+..+....|...|..||.|..|.+-+ ..-||+|.|.+
T Consensus 446 glG~~-------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes 500 (975)
T KOG0112|consen 446 GLGQP-------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYES 500 (975)
T ss_pred ccccc-------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeeccc
Confidence 44321 123457899999999999999999999999998876642 24699999999
Q ss_pred HHHHHHHHHHhCCcEeCC--eeEEEEeecCCCCCCCc
Q 020607 267 AEDLQSALDAMNGVEVEG--RPLRLNMANERAPPVLP 301 (323)
Q Consensus 267 ~e~A~~Al~~l~~~~i~g--~~l~V~~a~~~~~~~~~ 301 (323)
...|..|+..|-|..|+| +++.|.|+.....+...
T Consensus 501 ~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~Pqq 537 (975)
T KOG0112|consen 501 PPAAQAATHDMRGAPLGGPPRRLRVDLASPPGATPQQ 537 (975)
T ss_pred CccchhhHHHHhcCcCCCCCcccccccccCCCCChhh
Confidence 999999999999999987 88999999887665443
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.93 E-value=2e-09 Score=104.21 Aligned_cols=79 Identities=22% Similarity=0.416 Sum_probs=74.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
.+||||++|+..+++.||..+|+.||.|..|.++ .++|+|||.+.+.++|.+|++.|++..+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 3799999999999999999999999999999987 3489999999999999999999999999999999999999
Q ss_pred CCCCC
Q 020607 295 RAPPV 299 (323)
Q Consensus 295 ~~~~~ 299 (323)
.+...
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 88764
No 121
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=1.9e-09 Score=92.39 Aligned_cols=85 Identities=31% Similarity=0.540 Sum_probs=79.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.+.|||-.||....+.+|...|-.||.|.+.++..|+.|+.++.|+||.|.++.++..||..+||..|+-++++|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 020607 187 NFPEV 191 (323)
Q Consensus 187 ~~a~~ 191 (323)
.+-..
T Consensus 360 QLKRP 364 (371)
T KOG0146|consen 360 QLKRP 364 (371)
T ss_pred hhcCc
Confidence 87553
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.88 E-value=1.4e-08 Score=97.37 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=70.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
+.|-+.|+|+.++-+||.+||..|-.+..-.+++..+.|...|-|.|-|++.++|.+|...|+++.|..++|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3789999999999999999999998777777777778999999999999999999999999999999999999864
No 123
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.85 E-value=4.2e-09 Score=94.84 Aligned_cols=155 Identities=24% Similarity=0.298 Sum_probs=109.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
....|||++||.++++.+++++|.+||.|..+.++.|..+.+++||+||.|.+++.+.+++.. .-+.|.|+.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeecc
Confidence 566899999999999999999999999999999999999999999999999999999999984 8899999999999987
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEE----Ee--eecCCCCcccEEEEEe
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK----VI--FERYTGRSRGFGFVTF 264 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~----i~--~~~~~g~~~g~afV~F 264 (323)
.+........... ......|+....+.-.|..+|..|+.+.... -. .... ..+.|.+|..|
T Consensus 175 pk~~~~~~~~~~~------------~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~g~~~~ 241 (311)
T KOG4205|consen 175 PKEVMQSTKSSVS------------TRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGP-LFNGGSGYPEF 241 (311)
T ss_pred chhhccccccccc------------cccccccccccccccccchhccccCcccccccccccccccccc-ccCCCcccccc
Confidence 5544333221110 0111113444444444555565555443110 00 1110 13568899999
Q ss_pred CCHHHHHHHHHHhCC
Q 020607 265 ETAEDLQSALDAMNG 279 (323)
Q Consensus 265 ~~~e~A~~Al~~l~~ 279 (323)
.+......+...+++
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 242 GNSGLGFGYGNKLNR 256 (311)
T ss_pred CccccccccccccCC
Confidence 877777776665554
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.4e-09 Score=97.63 Aligned_cols=175 Identities=17% Similarity=0.120 Sum_probs=116.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|+|-|||..+++++|+.+|+.||+|+.|+.- -..+|..||+|-+..+|++|++.|++..+.|++|+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 445677899999999999999999999999999997764 445899999999999999999999999999999992
Q ss_pred ecCCCCCCCccccC----CCCccCCCCCc-cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEE
Q 020607 187 NFPEVPRGGERAAM----GPKLQNSYQGF-VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGF 261 (323)
Q Consensus 187 ~~a~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~af 261 (323)
.............. ........... ..+...+ ++.|+...+..-++..|.-+|.+.. +. ++.-+..-|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~ 217 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRF 217 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-cc-----ccchhhhhh
Confidence 11110000000000 00000000000 0111222 3338888777666777777777665 33 233344677
Q ss_pred EEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 262 VTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 262 V~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
+.|.+..++..+.... |..+.|....+.+..+
T Consensus 218 ~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 8888888886666533 7788888777777666
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.79 E-value=2.4e-08 Score=86.62 Aligned_cols=82 Identities=30% Similarity=0.598 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
..+|+|.|||+.++++||+++|..||.+..+-+.+++ .|++.|.|-|.|...+||.+|++.+++..++|+.+.+.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3679999999999999999999999999999999888 899999999999999999999999999999999999987664
Q ss_pred CCC
Q 020607 192 PRG 194 (323)
Q Consensus 192 ~~~ 194 (323)
+..
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 433
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=1.7e-08 Score=89.66 Aligned_cols=76 Identities=25% Similarity=0.416 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH-hCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL-FDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~-l~~~~~~gr~i~V~~ 188 (323)
..-.+|||++|...++|.+|+++|.+||+|+.|+++... ++|||+|.+...|..|... ++...|+|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 345689999999999999999999999999999998665 7999999999999988865 566678999999999
Q ss_pred CCC
Q 020607 189 PEV 191 (323)
Q Consensus 189 a~~ 191 (323)
...
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.76 E-value=3.1e-08 Score=85.89 Aligned_cols=85 Identities=27% Similarity=0.525 Sum_probs=75.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
....+|+|.|||+.++.+||+++|..||.+..+-+..+. .|.+.|.|-|.|...++|.+|++.+||..++|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344789999999999999999999999977777776665 8999999999999999999999999999999999999987
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
......
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 765443
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.76 E-value=5.4e-08 Score=81.55 Aligned_cols=92 Identities=15% Similarity=0.271 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCC-CCcccEEEEEeCCHHHHHHHHHHhCCcEe---CCeeEEE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGVEV---EGRPLRL 289 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~-g~~~g~afV~F~~~e~A~~Al~~l~~~~i---~g~~l~V 289 (323)
.-++|||.+||.++...+|..+|..|.+.+...+..-... ...+-+|||.|.+.++|..|+++|||..| .+..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3579999999999999999999999988877766433222 22457999999999999999999999999 5899999
Q ss_pred EeecCCCCCCCccccc
Q 020607 290 NMANERAPPVLPAAKE 305 (323)
Q Consensus 290 ~~a~~~~~~~~~~~~~ 305 (323)
++|+.+..........
T Consensus 113 ElAKSNtK~kr~k~sg 128 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSG 128 (284)
T ss_pred eehhcCcccccCCCCC
Confidence 9999987766655554
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.75 E-value=7.1e-08 Score=71.92 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=70.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhccC--CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC----CeeEEE
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE----GRPLRL 289 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~--G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~----g~~l~V 289 (323)
+||+|+|+|...|.++|.+++... |...-+.++.|..++.+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988654 56667788889889999999999999999999999999998885 577788
Q ss_pred EeecCCC
Q 020607 290 NMANERA 296 (323)
Q Consensus 290 ~~a~~~~ 296 (323)
.||+-.+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887543
No 130
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=98.74 E-value=1.6e-09 Score=80.93 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=37.9
Q ss_pred ccCCCCCcCcCCCCCCCCCCCccCCCCCCcccccccccccccccccCCCCCc
Q 020607 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQ 76 (323)
Q Consensus 25 t~~~p~~l~~lf~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (323)
|++|||||++||+||||++|++|+++.++-..... .++++.|...+....
T Consensus 2 t~~lPp~ll~LF~PRPPL~y~pP~d~~p~~r~t~~--itGvs~~l~~~~~~~ 51 (94)
T PF12220_consen 2 TSKLPPNLLALFAPRPPLPYLPPIDYPPEKRKTPP--ITGVSQYLSEFEDYK 51 (94)
T ss_pred cCcCCHHHHHHcCCCCCCCCCCccccCcccccCCC--CCcHHHHHHHHhccc
Confidence 78999999999999999999999998776432221 456666666555444
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=2.4e-07 Score=69.09 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=68.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh--cCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC----CeEEEE
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG----GRTVKV 186 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~----gr~i~V 186 (323)
+||+|+|||...|.++|.+++.. .|...-+.+..|..++.+.|||||.|.+.+.|.+.++.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999986 366677888899989999999999999999999999999999885 456666
Q ss_pred ecCC
Q 020607 187 NFPE 190 (323)
Q Consensus 187 ~~a~ 190 (323)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=5.2e-08 Score=91.12 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.....+|||+|||.+++..+|+++|..||+|+..+|......++...||||+|.+...+..|+.. +...++|+++.|.-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34455699999999999999999999999999988865444455559999999999999999996 78899999999975
Q ss_pred CC
Q 020607 189 PE 190 (323)
Q Consensus 189 a~ 190 (323)
-.
T Consensus 364 k~ 365 (419)
T KOG0116|consen 364 KR 365 (419)
T ss_pred cc
Confidence 44
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=4.4e-08 Score=92.04 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=75.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
...|||.+|...+...||+.+|++||.|+..+|+.+..+.-.+.|+||++.+.++|.+||+.||.+.+.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46799999999999999999999999999999998877766789999999999999999999999999999999999876
Q ss_pred CC
Q 020607 295 RA 296 (323)
Q Consensus 295 ~~ 296 (323)
-+
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 44
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.66 E-value=9.6e-08 Score=89.80 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...+.|||.+|...+...+|+.+|.+||.|....++.+..+-..+.|+||++.+..+|.+||..|+...++||-|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34567999999999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 020607 190 EVPRGG 195 (323)
Q Consensus 190 ~~~~~~ 195 (323)
+....+
T Consensus 483 KNEp~G 488 (940)
T KOG4661|consen 483 KNEPGG 488 (940)
T ss_pred ccCccc
Confidence 755443
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.65 E-value=8.3e-08 Score=92.10 Aligned_cols=180 Identities=13% Similarity=0.049 Sum_probs=132.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
....+-+.+.++++++.++++||..- .|..+.|..+...+-..|-++|.|....++.+|++. +...+-.|.+.|--+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 34457778999999999999998753 455666766665555589999999999999999996 7778888888886543
Q ss_pred CCCCCc----cccCC--------------C----CccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEe
Q 020607 191 VPRGGE----RAAMG--------------P----KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248 (323)
Q Consensus 191 ~~~~~~----~~~~~--------------~----~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~ 248 (323)
...-.. ..... . ..-+..........+|||..||..+++.++.++|...-.|++...+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 111000 00000 0 0000111122345789999999999999999999988888884444
Q ss_pred eecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 249 ~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
....+++.++.|||.|...+++..|...-+.+.++.+.|+|.-.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 44447888999999999999999999877888888899998743
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.61 E-value=1.3e-07 Score=88.45 Aligned_cols=83 Identities=25% Similarity=0.365 Sum_probs=72.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
...+|||+|||.+++..+|+++|..||.|....|......++...||||+|.+.+++..|+++ +-..++|++|.|+-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999998887765666669999999999999999995 6899999999999877
Q ss_pred CCCC
Q 020607 294 ERAP 297 (323)
Q Consensus 294 ~~~~ 297 (323)
....
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 6433
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.59 E-value=9.8e-08 Score=82.95 Aligned_cols=82 Identities=20% Similarity=0.465 Sum_probs=77.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
+...+||+|+.+.+|.+++..+|+.||.+..+.+..+...|.++|||||+|.+.+.+..|+. |+|..|.|+.+.|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 45789999999999999999999999999999999999999999999999999999999999 99999999999999988
Q ss_pred CCC
Q 020607 294 ERA 296 (323)
Q Consensus 294 ~~~ 296 (323)
-+.
T Consensus 179 ~~~ 181 (231)
T KOG4209|consen 179 TNV 181 (231)
T ss_pred eec
Confidence 773
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=6.9e-08 Score=83.89 Aligned_cols=83 Identities=25% Similarity=0.504 Sum_probs=76.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
.......+||+|+.+.+|.+++...|+.||.|..+.+..|+.+|.++|||||+|.+.+.+..+|. ||+..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34556789999999999999999999999999999999999999999999999999999999999 89999999999998
Q ss_pred cCCC
Q 020607 188 FPEV 191 (323)
Q Consensus 188 ~a~~ 191 (323)
+...
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 7653
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.57 E-value=2.2e-07 Score=82.66 Aligned_cols=80 Identities=16% Similarity=0.307 Sum_probs=72.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCcc--------EEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLL--------SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~--------~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~ 285 (323)
..+.|||.|||..+|.+++.++|+++|.|. .|++.++. .|..+|-|.+.|...+++.-|++.|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 346799999999999999999999999874 36777776 599999999999999999999999999999999
Q ss_pred eEEEEeecC
Q 020607 286 PLRLNMANE 294 (323)
Q Consensus 286 ~l~V~~a~~ 294 (323)
.|+|+.|+-
T Consensus 212 ~~rVerAkf 220 (382)
T KOG1548|consen 212 KLRVERAKF 220 (382)
T ss_pred EEEEehhhh
Confidence 999998864
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.57 E-value=7.6e-08 Score=82.20 Aligned_cols=81 Identities=26% Similarity=0.543 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
....+||-|.|..+++.+-|.+.|.+|-.-..-++++|+.||+++||+||.|.+..++..|++.++|..++.|.|+.+.+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34567999999999999999999999998899999999999999999999999999999999999999999999998755
Q ss_pred C
Q 020607 190 E 190 (323)
Q Consensus 190 ~ 190 (323)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.50 E-value=1.3e-07 Score=85.31 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=121.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecC---CCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR---VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+.|.|.||...++.++++.+|+..|.|..+++..+. ........|||.|.+...+..|-. |.+.+|-++.|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3489999999999999999999999999999987643 223456789999999998888876 788888888887764
Q ss_pred CCCCCCCcc--------ccC-------------CCCc---cCCCCC---------------ccCCCCeEEEecCCCCCCH
Q 020607 189 PEVPRGGER--------AAM-------------GPKL---QNSYQG---------------FVDSPHKIYAGNLGWGLTS 229 (323)
Q Consensus 189 a~~~~~~~~--------~~~-------------~~~~---~~~~~~---------------~~~~~~~l~V~nlp~~~t~ 229 (323)
......... +.. .... ...... ...-..+++|++|+..|..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 432111100 000 0000 000000 0011257999999999999
Q ss_pred HHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 230 ~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
.++-++|..+|.|.+.++. .|....+|.|.|....+...|+. ++|..+.-
T Consensus 166 ~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 9999999999999888775 45556789999999999999998 68877763
No 142
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=1.4e-07 Score=80.22 Aligned_cols=72 Identities=28% Similarity=0.537 Sum_probs=67.3
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~ 295 (323)
..+||++||+.+.+.+|..+|.+||.+..+.+. .||+||+|.+..+|.-|+..||+..|.|-++.|.|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999998876 689999999999999999999999999999999999953
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=1.3e-07 Score=88.99 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=64.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
+..+|+|-|||..++.++|+.+|+.||.|..|+.-+. .+|.+||+|-+.-+|++|+++|+++.|.|++|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4578999999999999999999999999999776544 489999999999999999999999999999998
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.42 E-value=1.1e-06 Score=84.91 Aligned_cols=84 Identities=26% Similarity=0.386 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeec---CCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER---YTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~---~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
..+.|||+||+..++++.|...|+.||.|..++|+... +..+.+.+|||-|.+..+|.+|++.|+|..+.+..+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 45789999999999999999999999999999987543 235568899999999999999999999999999999999
Q ss_pred eecCCCC
Q 020607 291 MANERAP 297 (323)
Q Consensus 291 ~a~~~~~ 297 (323)
|++.-.-
T Consensus 253 Wgk~V~i 259 (877)
T KOG0151|consen 253 WGKAVPI 259 (877)
T ss_pred ccccccc
Confidence 9966433
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.37 E-value=4.3e-08 Score=89.08 Aligned_cols=155 Identities=21% Similarity=0.312 Sum_probs=122.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc-cCCeEEEEecCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGGRTVKVNFPE 190 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~-~~gr~i~V~~a~ 190 (323)
..+|++||...++.++|+..|...- +...-.++. .|||||.+.+...|.+|++.++|.. +.|+++.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3589999999999999999998642 122222221 3899999999999999999999874 889999998764
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEe-eecCCCCcccEEEEEeCCHHH
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI-FERYTGRSRGFGFVTFETAED 269 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~-~~~~~g~~~g~afV~F~~~e~ 269 (323)
.++. ..+.+-++|+|....++-|-.+...||.+..+... .+.. ....-|+|.+.+.
T Consensus 75 ~kkq-------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~ 131 (584)
T KOG2193|consen 75 PKKQ-------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQ 131 (584)
T ss_pred hHHH-------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHH
Confidence 3211 22468899999999999999999999999888653 2222 2334488999999
Q ss_pred HHHHHHHhCCcEeCCeeEEEEeecCCCC
Q 020607 270 LQSALDAMNGVEVEGRPLRLNMANERAP 297 (323)
Q Consensus 270 A~~Al~~l~~~~i~g~~l~V~~a~~~~~ 297 (323)
+..|+..|+|..+....++|.|-.+...
T Consensus 132 ~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 132 HRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 9999999999999999999999655433
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.35 E-value=1.3e-06 Score=84.34 Aligned_cols=80 Identities=29% Similarity=0.478 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCC---CCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV---TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+.|||+||+..++|..|...|+.||+|..|+|++-+. ..+.+.+|||.|.+-.||.+|++.|+|..+.++.+++-|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 44599999999999999999999999999999987662 246678999999999999999999999999999999998
Q ss_pred CCC
Q 020607 189 PEV 191 (323)
Q Consensus 189 a~~ 191 (323)
++.
T Consensus 254 gk~ 256 (877)
T KOG0151|consen 254 GKA 256 (877)
T ss_pred ccc
Confidence 853
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=5.5e-07 Score=75.39 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
...+|||.|+-..++++-|.++|-+-|.|.++.|..+. +++.+ ||||.|.+.....-|++.+||..+.++.+.+.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34789999999999999999999999999999887776 56666 99999999999999999999999999999888744
Q ss_pred C
Q 020607 294 E 294 (323)
Q Consensus 294 ~ 294 (323)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 148
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.14 E-value=2.3e-06 Score=73.34 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCC--------CCcee----EEEEEECCHHHHHHHHHHhCCcc
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--------DRSRG----FGFVTMGSVEEAKEAIRLFDGSQ 178 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--------~~~~g----~afv~F~~~~~a~~A~~~l~~~~ 178 (323)
....||+++||+.+.-.-|+++|..||.|-+|.+-....+ |.+++ -|+|+|.+...|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999999766544 33333 27999999999999999999999
Q ss_pred cCCeEE
Q 020607 179 IGGRTV 184 (323)
Q Consensus 179 ~~gr~i 184 (323)
|+|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998753
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.11 E-value=2.4e-06 Score=76.78 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCcc--------EEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLL--------SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR 285 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~--------~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~ 285 (323)
...+|||-+||..+++++|.++|.++|.|. .|.|.+++.|+.+++-|.|.|.+...|+.|+..++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 446899999999999999999999998774 477888999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q 020607 286 PLRLNMANERAP 297 (323)
Q Consensus 286 ~l~V~~a~~~~~ 297 (323)
+|+|.+|..++.
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999999998875
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.11 E-value=5e-06 Score=59.32 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=48.0
Q ss_pred CeEEEecCCCCCCHHH----HHHHhccCCC-ccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 216 HKIYAGNLGWGLTSQG----LRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~----L~~~F~~~G~-v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
..|+|.|||.+..... |++++.-+|+ |..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999887654 5677777753 44431 4789999999999999999999999999999999
Q ss_pred eecCCC
Q 020607 291 MANERA 296 (323)
Q Consensus 291 ~a~~~~ 296 (323)
|.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 985443
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=3.2e-05 Score=55.24 Aligned_cols=69 Identities=29% Similarity=0.436 Sum_probs=47.4
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 113 ARLYVGNLPYSMTSSSLA----EVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~----~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
..|+|.|||.+.+...|+ .++..|| .|..| +.+-|+|.|.+.+.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 369999999999987754 5555676 45443 13789999999999999999999999999999999
Q ss_pred cCCC
Q 020607 188 FPEV 191 (323)
Q Consensus 188 ~a~~ 191 (323)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 152
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=2.9e-07 Score=90.49 Aligned_cols=165 Identities=15% Similarity=0.135 Sum_probs=123.4
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 111 EAARLYVGNLPYSMTSS-SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~-~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
......+.++-+...+. ..+..|+.+|.|+.|++...........++++++....+++.|.. ..+.-+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 34456777777776666 568889999999999987532222233388999999999999987 4888899999999887
Q ss_pred CCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHH
Q 020607 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~ 269 (323)
+......... .........+++||.||++.+.+.+|...|..+|.+..+.+......++.+|+|++.|..+++
T Consensus 649 d~~~~~~~~k-------vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 649 DAEEKEENFK-------VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred CchhhhhccC-------cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 6444211110 000001234689999999999999999999999988888777677788999999999999999
Q ss_pred HHHHHHHhCCcEeC
Q 020607 270 LQSALDAMNGVEVE 283 (323)
Q Consensus 270 A~~Al~~l~~~~i~ 283 (323)
+.+|+....++.++
T Consensus 722 ~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 722 AGAAVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhhhhh
Confidence 99999865555444
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=2.2e-05 Score=59.81 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=44.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC-----CcEeCCeeEEEE
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN-----GVEVEGRPLRLN 290 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~-----~~~i~g~~l~V~ 290 (323)
+.|+|.|++..++.++|++.|+.||.|.+|.+... ...|+|.|.+.+.|+.|+..+. +..+.|..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999887633 4579999999999999998873 446667666655
Q ss_pred e
Q 020607 291 M 291 (323)
Q Consensus 291 ~ 291 (323)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.95 E-value=2.6e-05 Score=69.39 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCCCHHHH------HHHHHhcCCceEEEEeecCCC-CCcee-E-EEEEECCHHHHHHHHHHhCCcccC
Q 020607 110 DEAARLYVGNLPYSMTSSSL------AEVFAEAGTVASAEIVYDRVT-DRSRG-F-GFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l------~~~F~~~G~i~~v~i~~~~~~-~~~~g-~-afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
-...-+||-+||..+..+++ .++|++||.|..|.+-+.... .-..+ + .||.|.+.++|.+||...+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 44566899999998777763 589999999988877543311 11122 2 399999999999999999999999
Q ss_pred CeEEEEecCC
Q 020607 181 GRTVKVNFPE 190 (323)
Q Consensus 181 gr~i~V~~a~ 190 (323)
||.|+..+..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999998754
No 155
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.82 E-value=1e-05 Score=69.41 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=62.3
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCC--------CCcc----cEEEEEeCCHHHHHHHHHHhCCcEeC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT--------GRSR----GFGFVTFETAEDLQSALDAMNGVEVE 283 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~--------g~~~----g~afV~F~~~e~A~~Al~~l~~~~i~ 283 (323)
..||++++|..+....|+++|+.||.|-+|.+.+...+ |.++ .-|+|+|.+...|.++...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999999876655 3322 34899999999999999999999999
Q ss_pred Cee
Q 020607 284 GRP 286 (323)
Q Consensus 284 g~~ 286 (323)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 975
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.81 E-value=2.3e-05 Score=70.56 Aligned_cols=83 Identities=27% Similarity=0.412 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--------SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
.....+|||.+||..+++.+|..+|.++|.|. .|.|.+++.|++++|-|.|.|.+...|++|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34455899999999999999999999999875 3788889999999999999999999999999999999999
Q ss_pred CeEEEEecCCC
Q 020607 181 GRTVKVNFPEV 191 (323)
Q Consensus 181 gr~i~V~~a~~ 191 (323)
|..|+|..+..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99999987753
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00014 Score=68.97 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC-Ce
Q 020607 110 DEAARLYVGNLPYSMTS------SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GR 182 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te------~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~-gr 182 (323)
.-...|+|.|+|---.. .-|.++|+++|+|....+..+.. |..+||.|++|.+..+|+.|++.|||..++ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45568999999954322 23568999999999999988774 459999999999999999999999999885 67
Q ss_pred EEEEec
Q 020607 183 TVKVNF 188 (323)
Q Consensus 183 ~i~V~~ 188 (323)
+..|+.
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 888864
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.66 E-value=0.00011 Score=65.57 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=63.9
Q ss_pred CeEEEecCCCCCCHHH----H--HHHhccCCCccEEEEeeecCCCCc-ccE--EEEEeCCHHHHHHHHHHhCCcEeCCee
Q 020607 216 HKIYAGNLGWGLTSQG----L--RDAFQGQPGLLSAKVIFERYTGRS-RGF--GFVTFETAEDLQSALDAMNGVEVEGRP 286 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~----L--~~~F~~~G~v~~i~i~~~~~~g~~-~g~--afV~F~~~e~A~~Al~~l~~~~i~g~~ 286 (323)
+-+||-+|+..+..++ | .++|++||.|..|.+-+...+..+ .+. .||+|.+.++|.+||...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5689999998877666 2 478999999999988766533222 222 499999999999999999999999999
Q ss_pred EEEEeecC
Q 020607 287 LRLNMANE 294 (323)
Q Consensus 287 l~V~~a~~ 294 (323)
|+..|+..
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99998754
No 159
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.64 E-value=3.1e-05 Score=69.66 Aligned_cols=82 Identities=27% Similarity=0.489 Sum_probs=74.0
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 111 EAARLY-VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 111 ~~~~lf-V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++| |++|++.+++++|+.+|..+|.|..+++..+..++..+|+|||.|.....+..++.. ....+.|+.+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999999987 888999999999887
Q ss_pred CCCC
Q 020607 190 EVPR 193 (323)
Q Consensus 190 ~~~~ 193 (323)
....
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 6443
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.53 E-value=0.00016 Score=55.15 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=42.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCC-----cccCCeEEEEe
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG-----SQIGGRTVKVN 187 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~-----~~~~gr~i~V~ 187 (323)
..|+|.+++..++.++|+..|..||.|..|.+.... ..|||-|.+++.|++|+..+.. ..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 358888999999999999999999999998886543 4799999999999999986543 34455544444
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=0.00023 Score=61.31 Aligned_cols=100 Identities=25% Similarity=0.325 Sum_probs=82.8
Q ss_pred HHHHHHHHhCCcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEE
Q 020607 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245 (323)
Q Consensus 166 ~a~~A~~~l~~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i 245 (323)
-|..|-..|++....|+.++|.++. ...|+|.||...++-+.+.+-|+.||.|...
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~------------------------~a~l~V~nl~~~~sndll~~~f~~fg~~e~a 61 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM------------------------HAELYVVNLMQGASNDLLEQAFRRFGPIERA 61 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec------------------------cceEEEEecchhhhhHHHHHhhhhcCccchh
Confidence 4667777899999999999999875 1579999999999999999999999999887
Q ss_pred EEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe----CCeeEEEE
Q 020607 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV----EGRPLRLN 290 (323)
Q Consensus 246 ~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i----~g~~l~V~ 290 (323)
.++.|. .|+..+-++|+|...-.|.+|+..++..-+ .++++-|.
T Consensus 62 v~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 62 VAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred eeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 777665 688889999999999999999998844333 34444444
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.42 E-value=0.00013 Score=65.38 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
...+|||||-+.+|++||.+.+...| .+.+++++.++.+|+++|||+|...+....++.++.|-.+.|+|+.-.|.-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 34699999999999999999999877 677888999999999999999999999999999999999999998777743
No 163
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.41 E-value=0.00037 Score=61.08 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=53.6
Q ss_pred HHHHHHHhccCCCccEEEEeeecCCCCc-ccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 229 SQGLRDAFQGQPGLLSAKVIFERYTGRS-RGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 229 ~~~L~~~F~~~G~v~~i~i~~~~~~g~~-~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
++++++.+++||.|..|.|+-++..-.. ---.||+|...++|.+|+-.|||+.|+||.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5578899999999999988766533222 2348999999999999999999999999999988753
No 164
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00054 Score=64.61 Aligned_cols=66 Identities=27% Similarity=0.330 Sum_probs=61.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHH-hcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~ 173 (323)
..++.+|||||+||..++.++|..+|+ -||.|..+-|=.|..-+.++|-|=|.|.+...-.+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 458899999999999999999999999 599999999988877889999999999999999999984
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.28 E-value=0.00029 Score=64.79 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=63.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeee---cCCCC----------cccEEEEEeCCHHHHHHHHHHhCCc
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE---RYTGR----------SRGFGFVTFETAEDLQSALDAMNGV 280 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~---~~~g~----------~~g~afV~F~~~e~A~~Al~~l~~~ 280 (323)
+.++|.+.|||.+-.-+.|.++|+.+|.|..|+|... ..+++ .+-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4579999999999999999999999999999999866 33322 1467999999999999999988665
Q ss_pred EeCCeeEEEEeecC
Q 020607 281 EVEGRPLRLNMANE 294 (323)
Q Consensus 281 ~i~g~~l~V~~a~~ 294 (323)
...-.-++|.+-..
T Consensus 310 ~~wr~glkvkLl~k 323 (484)
T KOG1855|consen 310 QNWRMGLKVKLLGK 323 (484)
T ss_pred hhhhhcchhhhhhc
Confidence 55444455544333
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.22 E-value=0.0015 Score=49.15 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=54.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeec-------CCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe-e
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER-------YTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR-P 286 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~-------~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~-~ 286 (323)
.+-|.|-|.|.. ....|.+.|++||.|.+..-.... .......+..|+|.++.+|.+||. .||..+.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356888888887 777899999999999776511110 011235799999999999999998 699999884 6
Q ss_pred EEEEeecC
Q 020607 287 LRLNMANE 294 (323)
Q Consensus 287 l~V~~a~~ 294 (323)
+-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 66877744
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.21 E-value=0.0021 Score=51.29 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=52.7
Q ss_pred CCCCeEEEecCCC------CCCH---HHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 020607 213 DSPHKIYAGNLGW------GLTS---QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283 (323)
Q Consensus 213 ~~~~~l~V~nlp~------~~t~---~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~ 283 (323)
++..||.|.-+.. ...+ .+|.+.|..||.+.=+|+. .+.-+|+|.+-+.|.+|+. ++|..++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv--------~~~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV--------GDTMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE--------TTCEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe--------CCeEEEEECccHHHHHHHc-cCCcEEC
Confidence 4456777775551 1222 2677888999998888776 3468999999999999999 8999999
Q ss_pred CeeEEEEeecCC
Q 020607 284 GRPLRLNMANER 295 (323)
Q Consensus 284 g~~l~V~~a~~~ 295 (323)
|+.|+|++..+.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999987664
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.13 E-value=0.0012 Score=43.59 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHH
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~ 171 (323)
+.|-|.+.+.+..+ .+..+|..||+|..+.+- .....+||.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 46778888876664 455689999999998874 23478999999999999985
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.02 E-value=0.0006 Score=61.20 Aligned_cols=79 Identities=19% Similarity=0.375 Sum_probs=66.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCC--CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE-Ee
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL-NM 291 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G--~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V-~~ 291 (323)
..++||+||-|.+|++||.+.+...| .+.+++++-+..+|.++|||+|-..+....++.++.|-.+.|.|+.-.| .|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35799999999999999999998776 4677788888888999999999999999999999999999998854444 44
Q ss_pred ec
Q 020607 292 AN 293 (323)
Q Consensus 292 a~ 293 (323)
.+
T Consensus 160 NK 161 (498)
T KOG4849|consen 160 NK 161 (498)
T ss_pred ch
Confidence 33
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.00092 Score=63.61 Aligned_cols=76 Identities=13% Similarity=0.254 Sum_probs=61.7
Q ss_pred CCeEEEecCCCCC------CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC-CeeE
Q 020607 215 PHKIYAGNLGWGL------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE-GRPL 287 (323)
Q Consensus 215 ~~~l~V~nlp~~~------t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~-g~~l 287 (323)
...|+|.|+|.-- -..-|.++|+++|.++...+..+..+| .+||.|++|.+..+|..|++.|||..++ +++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3578888888632 223466889999999999998888655 8999999999999999999999999885 5666
Q ss_pred EEEe
Q 020607 288 RLNM 291 (323)
Q Consensus 288 ~V~~ 291 (323)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6654
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.95 E-value=0.00042 Score=59.83 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=53.2
Q ss_pred HHHHHHHH-hcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 127 SSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 127 ~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
++|..+|. +||+|+.+.+..+. ...-.|-+||.|..+++|.+|+..||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45666666 89999998776554 45667899999999999999999999999999999998765
No 172
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.92 E-value=0.0021 Score=42.48 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=42.0
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHH
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al 274 (323)
+.|.|.|.+.... +.+..+|..||.|..+.+. ....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 4678888887654 5566688899999998875 23568999999999999985
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.86 E-value=0.001 Score=61.38 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=61.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeec---CCC--CC--------ceeEEEEEECCHHHHHHHHHHhCC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD---RVT--DR--------SRGFGFVTMGSVEEAKEAIRLFDG 176 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~--~~--------~~g~afv~F~~~~~a~~A~~~l~~ 176 (323)
-+.++|.+.|||.+-.-+.|.++|+.+|.|..|+|..- ... +. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999999999999999999999999865 211 22 245799999999999999997755
Q ss_pred cccCCeEEEEe
Q 020607 177 SQIGGRTVKVN 187 (323)
Q Consensus 177 ~~~~gr~i~V~ 187 (323)
..-+-..++|.
T Consensus 309 e~~wr~glkvk 319 (484)
T KOG1855|consen 309 EQNWRMGLKVK 319 (484)
T ss_pred hhhhhhcchhh
Confidence 44433334443
No 174
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.84 E-value=0.0039 Score=46.88 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=50.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEE-EeecC------CCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDR------VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~-i~~~~------~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
...|.|-+.|.. ....|.++|++||.|.+.. +.++. ......++..|.|.+..+|.+|+.. ||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 446888888888 6678889999999987764 11110 0112346899999999999999996 9999998655
Q ss_pred E-EecC
Q 020607 185 K-VNFP 189 (323)
Q Consensus 185 ~-V~~a 189 (323)
- |.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 4 5554
No 175
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.83 E-value=0.0026 Score=58.06 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=66.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCC---CCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT---GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~---g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
..|.|.||...++.++++.+|+-.|.|..+.++..... ......|||.|.+.+.+..|-. |.++.|-|+-|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999999864322 2346789999999999888765 8888888888877765
Q ss_pred cCCCCCC
Q 020607 293 NERAPPV 299 (323)
Q Consensus 293 ~~~~~~~ 299 (323)
.....|.
T Consensus 87 ~~~~~p~ 93 (479)
T KOG4676|consen 87 GDEVIPD 93 (479)
T ss_pred CCCCCcc
Confidence 5544443
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.80 E-value=0.00058 Score=58.99 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=50.7
Q ss_pred HHHHHHhc-cCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 230 QGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 230 ~~L~~~F~-~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
+++...|. +||.|+.++|.... .-.-+|-++|.|...++|++|++.|||..+.|++|+..+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 99999998765433 22347889999999999999999999999999999988754
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.66 E-value=0.005 Score=54.18 Aligned_cols=65 Identities=25% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCceEEEEeecCCCCC-ceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 126 SSSLAEVFAEAGTVASAEIVYDRVTDR-SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 126 e~~l~~~F~~~G~i~~v~i~~~~~~~~-~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+.++++..++||.|.+|.|..+...-. ..--.||+|++.++|.+|+-.|||..|+||.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 345678889999999999987752211 12237999999999999999999999999999876543
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.60 E-value=0.0026 Score=60.99 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=63.2
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCC-CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe---CCeeE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV---EGRPL 287 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i---~g~~l 287 (323)
....+.|+|.||-.-+|.-+|+.++++-| .|... ++.. -+..|||.|.+.++|.....+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 44568899999999999999999999554 45544 4322 266899999999999999999999887 67999
Q ss_pred EEEeecC
Q 020607 288 RLNMANE 294 (323)
Q Consensus 288 ~V~~a~~ 294 (323)
.+.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999765
No 179
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.47 E-value=0.0039 Score=62.57 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC--eEEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKV 186 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g--r~i~V 186 (323)
....+.+++++|...+.-..|...|..||+|..|.+-. |. -||||.|++...+..|+..+-|..|+| ++++|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CC--cceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 34566899999999999999999999999999887743 33 599999999999999999999999986 78999
Q ss_pred ecCCCCC
Q 020607 187 NFPEVPR 193 (323)
Q Consensus 187 ~~a~~~~ 193 (323)
.++....
T Consensus 526 dla~~~~ 532 (975)
T KOG0112|consen 526 DLASPPG 532 (975)
T ss_pred ccccCCC
Confidence 9887443
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.33 E-value=0.014 Score=46.66 Aligned_cols=78 Identities=27% Similarity=0.322 Sum_probs=53.3
Q ss_pred ccCCCCCeEEEcCCC------CCCCH---HHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCc
Q 020607 107 AASDEAARLYVGNLP------YSMTS---SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp------~~~te---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~ 177 (323)
....+..||.|.=+. ....+ .+|...|..||.+.-||++.+ .-+|+|.+-+.|-+|+. ++|.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~ 92 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGI 92 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCS
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCc
Confidence 345666788887555 12222 357788889999888888743 48999999999999998 7999
Q ss_pred ccCCeEEEEecCCCCC
Q 020607 178 QIGGRTVKVNFPEVPR 193 (323)
Q Consensus 178 ~~~gr~i~V~~a~~~~ 193 (323)
.+.|+.|+|+.-....
T Consensus 93 ~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 93 QVNGRTLKIRLKTPDW 108 (146)
T ss_dssp EETTEEEEEEE-----
T ss_pred EECCEEEEEEeCCccH
Confidence 9999999998765443
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.31 E-value=0.021 Score=38.80 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=45.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccC---CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQ---PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~---G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l 277 (323)
+..|+|+|+.. ++.+||+.+|..| .....|..+-|. -|-|-|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45799999854 8999999999988 235677777664 4889999999999999864
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.67 E-value=0.011 Score=56.84 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc---CCeEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI---GGRTV 184 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~---~gr~i 184 (323)
....+.|+|.||-.-+|..+|+.++.+ .|.|...+| .+-+..|||.|.+.++|.+....|||..| +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345678999999999999999999995 666766633 22346799999999999999999999998 57888
Q ss_pred EEecCC
Q 020607 185 KVNFPE 190 (323)
Q Consensus 185 ~V~~a~ 190 (323)
.+.|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 888764
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.59 E-value=0.14 Score=39.16 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=52.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g 181 (323)
....+.+...|+.++-++|..+...+- .|..++|++|. ..++=.+.+.|.+..+|...+..+||+.++-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344566666777777777776655553 57788888875 3355578999999999999999999998863
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.46 E-value=0.013 Score=49.01 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=50.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHh-cCCc---eEEEEeecCCCCC--ceeEEEEEECCHHHHHHHHHHhCCcccCC---
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAE-AGTV---ASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIGG--- 181 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~-~G~i---~~v~i~~~~~~~~--~~g~afv~F~~~~~a~~A~~~l~~~~~~g--- 181 (323)
....|.|++||+..||+++.+.+.. ++.. ..+.-.......+ ...-|||.|.+.+++......++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4458999999999999999887766 6655 3333222222211 23459999999999999999999988743
Q ss_pred --eEEEEecCC
Q 020607 182 --RTVKVNFPE 190 (323)
Q Consensus 182 --r~i~V~~a~ 190 (323)
....|.++-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 345555554
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.42 E-value=0.17 Score=38.82 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=49.6
Q ss_pred CeEEEecCCCCCCHHHHHHHhccC-CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~-G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
..+.+-..|+.++.++|..+...+ ..|..++++++. ..++-.+.++|.+.+.|..-...+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345555566666777777666655 456677887764 2356679999999999999999999998854
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.32 E-value=0.08 Score=38.03 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=42.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~ 175 (323)
....+|+ .|......||.++|+.||.| .|..+-| .-|||...+.+.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 4456666 99999999999999999998 4666655 379999999999999998765
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.20 E-value=0.064 Score=44.86 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=50.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhcc-CCCc---cEEEE-eeecCCCC-cccEEEEEeCCHHHHHHHHHHhCCcEeCC---
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQG-QPGL---LSAKV-IFERYTGR-SRGFGFVTFETAEDLQSALDAMNGVEVEG--- 284 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~-~G~v---~~i~i-~~~~~~g~-~~g~afV~F~~~e~A~~Al~~l~~~~i~g--- 284 (323)
...+|.|++||+++|++++.+.+.. ++.- ..+.- ..+...+. ....|+|.|.+.+++..-...++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999997776 5544 22221 11111111 23469999999999999999999988743
Q ss_pred --eeEEEEeecCCCCC
Q 020607 285 --RPLRLNMANERAPP 298 (323)
Q Consensus 285 --~~l~V~~a~~~~~~ 298 (323)
-+..|.+|--..-|
T Consensus 86 ~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 86 NEYPAVVEFAPYQKVP 101 (176)
T ss_dssp -EEEEEEEE-SS----
T ss_pred CCcceeEEEcchhccc
Confidence 45566676654443
No 188
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.06 E-value=0.029 Score=48.68 Aligned_cols=75 Identities=28% Similarity=0.348 Sum_probs=62.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc----cCCeEEEEec
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ----IGGRTVKVNF 188 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~----~~gr~i~V~~ 188 (323)
..|+|.||+.-+.-+.+...|+.||+|..-.++.|. .++..+-++|.|...-.+.+|+..+...- ..++..-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999886666665 68889999999999999999998874333 3456666644
No 189
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.85 E-value=0.035 Score=51.39 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=57.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc-EeCCeeEEEEeecC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV-EVEGRPLRLNMANE 294 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~-~i~g~~l~V~~a~~ 294 (323)
+.+|++||...++..||..+|...-.-..-.++. ..||+||.+.+...|.+|++.++|+ .+.|+++.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997652111111111 2589999999999999999999885 58999999887654
Q ss_pred C
Q 020607 295 R 295 (323)
Q Consensus 295 ~ 295 (323)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 3
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.81 E-value=0.23 Score=33.73 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc----CCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEA----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l 174 (323)
..|+|+++. +.+.++|+.+|..| ++ .+|..+-|. -|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999984 57888999999999 54 578888764 5889999999999999753
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.61 E-value=0.11 Score=43.62 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=46.1
Q ss_pred CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC--CcEeCCeeEEEEeecCC
Q 020607 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN--GVEVEGRPLRLNMANER 295 (323)
Q Consensus 228 t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~--~~~i~g~~l~V~~a~~~ 295 (323)
..+.|+++|..|+.+.....++. =+-..|.|.+.+.|.+|...|+ +..+.|..+++.|+..-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888777633 3458899999999999999999 99999999999999443
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.60 E-value=0.25 Score=35.58 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=40.3
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~ 279 (323)
...+|. .|..+...||.++|+.||.|. |..+-+ .-|||...+.+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 445555 999999999999999999773 444433 4699999999999999988753
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.27 E-value=0.36 Score=45.36 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g 181 (323)
...|+|-.+|-.++-.||..|...+- .|..|++++|. -.++-.+.|.|.+..+|...+..+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998764 68899999964 2334468999999999999999999999864
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.24 E-value=0.017 Score=52.00 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=60.7
Q ss_pred CeEEEecCCCCCCHHHHH---HHhccCCCccEEEEeeecC--CCCc-ccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 216 HKIYAGNLGWGLTSQGLR---DAFQGQPGLLSAKVIFERY--TGRS-RGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~---~~F~~~G~v~~i~i~~~~~--~g~~-~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
.-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+.. ---++|+|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 356777888776555543 5799999999999887662 1211 123899999999999999999999999999888
Q ss_pred EeecC
Q 020607 290 NMANE 294 (323)
Q Consensus 290 ~~a~~ 294 (323)
.++..
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77655
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.05 E-value=0.025 Score=51.00 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=60.1
Q ss_pred CCeEEEcCCCCCCCHHHH---HHHHHhcCCceEEEEeecCC--C--CCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 112 AARLYVGNLPYSMTSSSL---AEVFAEAGTVASAEIVYDRV--T--DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l---~~~F~~~G~i~~v~i~~~~~--~--~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
..-+||-+|+.....+.+ ...|.+||.|..|.+..+.. . +-. --+||+|..+++|..||...+|...+|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 345788888877655444 37899999999999887662 1 111 128999999999999999999999999997
Q ss_pred EEecCC
Q 020607 185 KVNFPE 190 (323)
Q Consensus 185 ~V~~a~ 190 (323)
+..+..
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 776543
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.02 E-value=0.094 Score=50.31 Aligned_cols=74 Identities=14% Similarity=0.257 Sum_probs=57.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHh--cCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCC--cccCCeE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SQIGGRT 183 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~--~~~~gr~ 183 (323)
.....+.|.++.||..+-.++++.+|.. +-++.+|.+-.+. -=||+|+++.||+.|++.|.. ..|.|+.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3445567889999999999999999986 6677788776554 359999999999999987653 3477777
Q ss_pred EEEec
Q 020607 184 VKVNF 188 (323)
Q Consensus 184 i~V~~ 188 (323)
|..++
T Consensus 244 ImARI 248 (684)
T KOG2591|consen 244 IMARI 248 (684)
T ss_pred hhhhh
Confidence 66554
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.79 E-value=0.23 Score=44.27 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=53.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe-eEEEEeecC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR-PLRLNMANE 294 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~-~l~V~~a~~ 294 (323)
.=|-|-+.|.. .-.-|..+|.+||.|++... +....+-+|+|.+..+|.+||. .||+.|+|. .|-|..+.+
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 34677777776 45567889999999987653 3345699999999999999999 699999874 445555433
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.24 E-value=0.44 Score=37.87 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=56.2
Q ss_pred cCCCCeEEEecCCCCC-CHHHHH---HHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeE
Q 020607 212 VDSPHKIYAGNLGWGL-TSQGLR---DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~-t~~~L~---~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l 287 (323)
..+-.+|.|+=|..++ ..+|++ ..++.||.|..|-.. ++.-|.|.|.+..+|=+|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 3455789998776665 334444 456789999998764 355799999999999999999876 6778888
Q ss_pred EEEeec
Q 020607 288 RLNMAN 293 (323)
Q Consensus 288 ~V~~a~ 293 (323)
..+|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888754
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.05 E-value=0.32 Score=46.83 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhcc--CC
Q 020607 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQG--QP 240 (323)
Q Consensus 163 ~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~--~G 240 (323)
+.+-...+++..-+..++.+-.+|+... ..|.|.++-||..+-.++++.+|+. +-
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~-----------------------kRcIvilREIpettp~e~Vk~lf~~encP 202 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNH-----------------------KRCIVILREIPETTPIEVVKALFKGENCP 202 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCc-----------------------ceeEEEEeecCCCChHHHHHHHhccCCCC
Confidence 4566777888777777877777776432 2377899999999999999999975 34
Q ss_pred CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--cEeCCeeEEEEe
Q 020607 241 GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG--VEVEGRPLRLNM 291 (323)
Q Consensus 241 ~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~i~g~~l~V~~ 291 (323)
.+..|.+-... -=||+|.+..+|+.|.+.|.. +.|.|++|...+
T Consensus 203 k~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 203 KVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred CceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 45555554332 258999999999999998843 668888875543
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.92 E-value=1 Score=42.47 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=58.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccC-CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~-G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
...|+|-.+|..++--||..|+..+ -.|..+++++|.. ..+-.+.|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5789999999999999999999866 5688999998542 335579999999999999999999988854
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.85 E-value=0.9 Score=36.16 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=55.0
Q ss_pred cCCCCCeEEEcCCCCCCCH----HHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeE
Q 020607 108 ASDEAARLYVGNLPYSMTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te----~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~ 183 (323)
...+-.||.|+=|..++.. ..+...++.||+|..|.+. |+ ..|.|.|.+...|-+|+..+.. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3456668999877766542 3355667789999999774 44 4699999999999999998654 667777
Q ss_pred EEEecC
Q 020607 184 VKVNFP 189 (323)
Q Consensus 184 i~V~~a 189 (323)
+...|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 777653
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.81 E-value=0.12 Score=48.60 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=62.2
Q ss_pred CCCeEEEecCCCCC-CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 214 SPHKIYAGNLGWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp~~~-t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
..+.|-+.-.|+.+ +.++|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+||.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34566666677776 67899999999999999877433 3468999999999988876 6999999999999999
Q ss_pred cCCC
Q 020607 293 NERA 296 (323)
Q Consensus 293 ~~~~ 296 (323)
.+.+
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8844
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.80 E-value=0.056 Score=50.84 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=58.8
Q ss_pred eEEEcCCCCCC-CHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCC
Q 020607 114 RLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 114 ~lfV~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~ 192 (323)
.|-+.-.|+.. +-.+|...|.+||.|..|.+-+. .--|.|+|.+..+|-.|+. .++..|+||-|+|.|....
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 45555555553 46789999999999999988554 2569999999999999997 5999999999999998743
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.54 E-value=0.35 Score=40.66 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC--CcccCCeEEEEecCC
Q 020607 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVKVNFPE 190 (323)
Q Consensus 125 te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~--~~~~~gr~i~V~~a~ 190 (323)
....|+++|..|+.+..+..++.- +-..|.|.+.+.|.+|...|+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 357899999999999888777544 568999999999999999999 999999999999884
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.47 E-value=0.74 Score=32.45 Aligned_cols=58 Identities=26% Similarity=0.518 Sum_probs=35.0
Q ss_pred CCCHHHHHHHhccCCCcc-----EEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 226 GLTSQGLRDAFQGQPGLL-----SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 226 ~~t~~~L~~~F~~~G~v~-----~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.++..+|..++...+.+. .|.+. ..|+||+-... .|..+++.|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 578889999988776653 34444 45899988754 788899999999999999999875
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.15 E-value=0.28 Score=35.86 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=48.0
Q ss_pred EEEEECCHHHHHHHHHHhC-CcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHH
Q 020607 157 GFVTMGSVEEAKEAIRLFD-GSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDA 235 (323)
Q Consensus 157 afv~F~~~~~a~~A~~~l~-~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~ 235 (323)
|.|+|.++.-|...++.-. ...+++..+.|............- .-....+.++|.|.|||..+.+++|++.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF--------QVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE--------EEEEcccCCEEEEeCCCCCCChhhheee
Confidence 6899999999999998522 234667777776543211110000 0011234578999999999999999987
Q ss_pred hc
Q 020607 236 FQ 237 (323)
Q Consensus 236 F~ 237 (323)
.+
T Consensus 73 Le 74 (88)
T PF07292_consen 73 LE 74 (88)
T ss_pred EE
Confidence 64
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.99 E-value=1.7 Score=30.01 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 122 YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 122 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
..++-++++.-+..|+-. +|..|+ ---||.|.+.++|++++...+|..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~------tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR------TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC------CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 347788999999999743 333343 22489999999999999999999998888765
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=1.4 Score=42.90 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=61.3
Q ss_pred ccCCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCceEEEEeecCC----------CCC-------------------
Q 020607 107 AASDEAARLYVGNLPYS-MTSSSLAEVFAEA----GTVASAEIVYDRV----------TDR------------------- 152 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~----------~~~------------------- 152 (323)
......++|-|.|+.++ +...+|..+|..| |.|.+|.|..... +|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34677889999999988 7889999999876 4788887754221 121
Q ss_pred ------------------ceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 153 ------------------SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 153 ------------------~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
.-=||.|+|.+.+.|.+.|..++|..+......++
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 11278999999999999999999999976544443
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.68 E-value=0.19 Score=49.35 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=82.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+..++||+|+.+.+..+-++.....+|-|..+..+ -|||..|........|+..++...++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3455689999999999999999999999988765543 2999999999999999999999999999998887
Q ss_pred CCCCCCCccccCCCCccCCCCCccC--CCCeEEEecCCCCCCHHHHHHHhccC
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVD--SPHKIYAGNLGWGLTSQGLRDAFQGQ 239 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~V~nlp~~~t~~~L~~~F~~~ 239 (323)
....-............. ...... ...-.+++|+|..+.+......+.--
T Consensus 108 d~q~~~n~~k~~~~~~~~-~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 108 DEQTIENADKEKSIANKE-SHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred hhhhhcCccccccchhhh-hcccCCchhHHHHHhhccccchhHHHHHHHHhcc
Confidence 421111110000000000 011111 13456788888887777776666533
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.48 E-value=0.16 Score=51.12 Aligned_cols=75 Identities=29% Similarity=0.320 Sum_probs=64.1
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe--CCeeEEEEeecC
Q 020607 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV--EGRPLRLNMANE 294 (323)
Q Consensus 217 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i--~g~~l~V~~a~~ 294 (323)
+..+.|.+-+.+-.-|-.+|..||.|.....+++- ..|.|+|.+.+.|..|+.+|+|+.+ -|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45666777788889999999999999999887553 5799999999999999999999876 788899999987
Q ss_pred CCC
Q 020607 295 RAP 297 (323)
Q Consensus 295 ~~~ 297 (323)
-.-
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 543
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.43 E-value=0.52 Score=42.06 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=50.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE-EEecC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV-KVNFP 189 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i-~V~~a 189 (323)
=|-|-+.|.... .-|..+|.+||.|.+... +....+-+|.|.+.-+|++|+.. ||..|+|-.+ =|..|
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 466667776544 456789999999977544 34457899999999999999985 9999988543 34443
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.56 E-value=2.2 Score=29.39 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=43.3
Q ss_pred CCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 226 ~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
.++-++++..+..|+ -.+ |..+. .| =||.|.+..+|++|....||+.+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 468899999999884 333 33332 23 479999999999999999999999988765
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.79 E-value=0.35 Score=47.51 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=63.4
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+..++||+|+-+.+..+-++.+...+|.|..+... -|||..|..+..+.+|+..++...++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456799999999999999999999999988776654 2899999999999999999999999999987766
Q ss_pred e
Q 020607 292 A 292 (323)
Q Consensus 292 a 292 (323)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 4
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.97 E-value=28 Score=31.34 Aligned_cols=166 Identities=12% Similarity=0.096 Sum_probs=95.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCC-------CCCceeEEEEEECCHHHHHHHHHH----hCC--cc
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV-------TDRSRGFGFVTMGSVEEAKEAIRL----FDG--SQ 178 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afv~F~~~~~a~~A~~~----l~~--~~ 178 (323)
.+.|...|+..+++--.+...|-+||+|+.|.++.+.. ..+......+.|-+.+.+-..+.. |.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 44588899999999999999999999999999997651 123345789999998888765542 222 23
Q ss_pred cCCeEEEEecCCCCCCC------ccccCCC---CccCCCCCccCCCCeEEEecCCCCCCHHHH-HHH---hccCC----C
Q 020607 179 IGGRTVKVNFPEVPRGG------ERAAMGP---KLQNSYQGFVDSPHKIYAGNLGWGLTSQGL-RDA---FQGQP----G 241 (323)
Q Consensus 179 ~~gr~i~V~~a~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L-~~~---F~~~G----~ 241 (323)
+.-..+.+.+....... +...... ..-.-.-......+.|.|.=- ..+.++++ .+. +..-+ .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceEE
Confidence 45556666544311110 0000000 000000011223355666532 33433333 222 22223 2
Q ss_pred ccEEEEeeecC--CCCcccEEEEEeCCHHHHHHHHHHhC
Q 020607 242 LLSAKVIFERY--TGRSRGFGFVTFETAEDLQSALDAMN 278 (323)
Q Consensus 242 v~~i~i~~~~~--~g~~~g~afV~F~~~e~A~~Al~~l~ 278 (323)
++.|.++-... ..-+..||.+.|-+..-|...+.-+.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 44555543322 23367899999999999988887764
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.69 E-value=3.6 Score=28.88 Aligned_cols=59 Identities=20% Similarity=0.415 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHhcCC-----ceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 122 YSMTSSSLAEVFAEAGT-----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 122 ~~~te~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
..++..+|..++...+. |-+|++.. .|+||+-.. +.|..++..|++..+.|+++.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34778889999988754 44566642 589998875 5889999999999999999999754
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.19 E-value=8.3 Score=37.74 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=62.8
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhccC----CCccEEEEeeec----------CCC----------------------
Q 020607 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQ----PGLLSAKVIFER----------YTG---------------------- 254 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~-~t~~~L~~~F~~~----G~v~~i~i~~~~----------~~g---------------------- 254 (323)
....++|-|-|+.|. +...||.-+|..| |.|..|.|.+.. ..|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999997 6889999888766 577887775421 011
Q ss_pred ---------------CcccEEEEEeCCHHHHHHHHHHhCCcEeC--CeeEEEEeecC
Q 020607 255 ---------------RSRGFGFVTFETAEDLQSALDAMNGVEVE--GRPLRLNMANE 294 (323)
Q Consensus 255 ---------------~~~g~afV~F~~~e~A~~Al~~l~~~~i~--g~~l~V~~a~~ 294 (323)
...-||.|+|.+.+.|......++|..+. |..+-+.|-..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 12358999999999999999999999985 56666666544
No 217
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=77.81 E-value=3.4 Score=33.17 Aligned_cols=117 Identities=11% Similarity=0.011 Sum_probs=77.5
Q ss_pred EEEcCCC--CCCCHHHHHHHHHh-cCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 115 LYVGNLP--YSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 115 lfV~nLp--~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
..|+.+. ...+-..|...+.. .+....+.+..- ..++..+.|.+++++.+++.. ....++|..+.+.....
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSP 91 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcc
Confidence 4444442 34566777777765 344334444321 248999999999999999984 77788888888876652
Q ss_pred CCCCccccCCCCccCCCCCccCCCCeEEEecCCCC-CCHHHHHHHhccCCCccEEEEe
Q 020607 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVI 248 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~i~i~ 248 (323)
........ ......=|.|.|||.. .+++-++.+.+.+|.+..+...
T Consensus 92 ~~~~~~~~-----------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 92 DFNPSEVK-----------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cccccccc-----------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 21111100 0112234788899987 6888899999999999887654
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.58 E-value=2 Score=43.74 Aligned_cols=75 Identities=31% Similarity=0.389 Sum_probs=62.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc--CCeEEEEecCCC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--GGRTVKVNFPEV 191 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~--~gr~i~V~~a~~ 191 (323)
+..+.|.+-..+..-|..+|.+||.|..++.+++. ..|.|+|...+.|..|+..++|+.+ .|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45556666778888899999999999999998876 7899999999999999999999875 577888888764
Q ss_pred CCC
Q 020607 192 PRG 194 (323)
Q Consensus 192 ~~~ 194 (323)
-..
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 433
No 219
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=77.20 E-value=3.2 Score=28.72 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=48.0
Q ss_pred HHHHHHhccCC-CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCC
Q 020607 230 QGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 230 ~~L~~~F~~~G-~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
.+|++-|..+| .+..++.+....++.+-..-+|+.....+-.. .|+=+.++|++|.|+....+..|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~~p 68 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRKNP 68 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccCCC
Confidence 46777888777 56778887777667777788888876543333 45667789999999987776655
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.88 E-value=1.5 Score=38.74 Aligned_cols=71 Identities=13% Similarity=0.319 Sum_probs=46.1
Q ss_pred CCCCCeEEEcCCCCC------------CCHHHHHHHHHhcCCceEEEEeec-----CCCCCceeE--------------E
Q 020607 109 SDEAARLYVGNLPYS------------MTSSSLAEVFAEAGTVASAEIVYD-----RVTDRSRGF--------------G 157 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~------------~te~~l~~~F~~~G~i~~v~i~~~-----~~~~~~~g~--------------a 157 (323)
.....||++.+||-. -++.-|+..|+.||.|..|.|... ..+|+..|. |
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 344558999999922 356779999999999999887532 234554333 3
Q ss_pred EEEECCHHHHHHHHHHhCCccc
Q 020607 158 FVTMGSVEEAKEAIRLFDGSQI 179 (323)
Q Consensus 158 fv~F~~~~~a~~A~~~l~~~~~ 179 (323)
||+|..-..-..|+..|.|.++
T Consensus 226 yvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchH
Confidence 4555444445556666666654
No 221
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=75.42 E-value=4.5 Score=28.06 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=47.1
Q ss_pred HHHHHHhccCC-CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCC
Q 020607 230 QGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 297 (323)
Q Consensus 230 ~~L~~~F~~~G-~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~ 297 (323)
++|++-|...| .|..+.-+....++.+-..-||+.....+... .++=+.++|.+|.|+..+.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~~~ 67 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKRRE 67 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCCCC
Confidence 46777777666 56677777776667777888898887665333 3566788999999998776654
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=74.31 E-value=7.1 Score=27.05 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=46.4
Q ss_pred HHHHHHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 127 SSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 127 ~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
++|.+.|...| +|..|.-+..+.++.+...-||+.....+...++ +=..+.|..|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCC
Confidence 57888898888 7777777777767788888999988776644444 4467889999998664
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.00 E-value=6 Score=30.57 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=31.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCH-HHHHHHHH
Q 020607 114 RLYVGNLPYS---------MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV-EEAKEAIR 172 (323)
Q Consensus 114 ~lfV~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~-~~a~~A~~ 172 (323)
++.|-|++.. .+-++|++.|..|.++ +++.+++. ..+.|++.|.|... ..-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 3556666543 3457899999999987 47777877 46679999999753 33444443
No 224
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=70.50 E-value=23 Score=33.30 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=55.2
Q ss_pred ccCCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCceEEEEeecCC--------------------------------
Q 020607 107 AASDEAARLYVGNLPYS-MTSSSLAEVFAEA----GTVASAEIVYDRV-------------------------------- 149 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~-------------------------------- 149 (323)
....+...|-|-|+.++ +...+|...|+.| |.+.+|.|.....
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~ 220 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGD 220 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCC
Confidence 34677888999999987 7788899888875 5677776643110
Q ss_pred --------CC------Cc-------------------eeEEEEEECCHHHHHHHHHHhCCcccCCe
Q 020607 150 --------TD------RS-------------------RGFGFVTMGSVEEAKEAIRLFDGSQIGGR 182 (323)
Q Consensus 150 --------~~------~~-------------------~g~afv~F~~~~~a~~A~~~l~~~~~~gr 182 (323)
.| .- -=||.|++.+.+.++..+..++|..+...
T Consensus 221 dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 221 DNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred ccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 01 01 12789999999999999999999887643
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.97 E-value=30 Score=30.92 Aligned_cols=59 Identities=12% Similarity=0.257 Sum_probs=41.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECC-------HHHHHHHHHHh
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS-------VEEAKEAIRLF 174 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~-------~~~a~~A~~~l 174 (323)
...-|+++||+.++.-.||+..+.+-|-+ -..|-+ ..++|-||+.|.+ ..++.+++..+
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCccCCCCCchHHHHHhccC
Confidence 34459999999999999999999987643 233322 2345889999975 34566666544
No 226
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.12 E-value=12 Score=25.90 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=45.7
Q ss_pred HHHHHHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 127 SSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 127 ~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
++|++.|...| ++..|+-+....++.+...-||+....-+... .++=..++|+++.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 47888999988 78888888887777777888998876544333 344466889999998654
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.58 E-value=7.5 Score=32.32 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=53.4
Q ss_pred CeEEEecCCCCCC-----HHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe-eEEE
Q 020607 216 HKIYAGNLGWGLT-----SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR-PLRL 289 (323)
Q Consensus 216 ~~l~V~nlp~~~t-----~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~-~l~V 289 (323)
..+.+.+++..+- ......+|..|.......++ ++.+..-|-|.+++.|..|...+++..|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4566666665542 22334566666555444444 2345667899999999999999999999988 8888
Q ss_pred EeecCCCCCC
Q 020607 290 NMANERAPPV 299 (323)
Q Consensus 290 ~~a~~~~~~~ 299 (323)
-++++...-.
T Consensus 85 yfaQ~~~~~~ 94 (193)
T KOG4019|consen 85 YFAQPGHPES 94 (193)
T ss_pred EEccCCCccc
Confidence 8887755443
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.32 E-value=18 Score=32.25 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=40.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCc-cEEEEeeecCCCCcccEEEEEeCCH-------HHHHHHHHHhC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGL-LSAKVIFERYTGRSRGFGFVTFETA-------EDLQSALDAMN 278 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v-~~i~i~~~~~~g~~~g~afV~F~~~-------e~A~~Al~~l~ 278 (323)
..|+|+||+.++.-.||+..+.+.|.+ ..+.+. ...|-||+.|.+. .++.+++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 569999999999999999999887654 233322 2367899999765 34455554443
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.30 E-value=27 Score=32.75 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=47.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~ 173 (323)
.+-.++|-|.+.|....-+||.+.|+.||. --+|.++-|. .||..|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 345668999999999999999999999974 3456666554 799999999999999974
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.77 E-value=24 Score=33.09 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=49.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCC-ccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCee
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~-v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~ 286 (323)
...|-|.+.|...-.+||...|..||. -.+|.++.+ ..||-.|.+...|..||-. ...++.=|+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~-kh~~lKiRp 455 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL-KHDWLKIRP 455 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc-cCceEEeee
Confidence 467999999999999999999999954 356666644 4799999999999999984 444443333
No 231
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=57.62 E-value=44 Score=24.20 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHh-cC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 020607 119 NLPYSMTSSSLAEVFAE-AG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (323)
Q Consensus 119 nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~ 173 (323)
.....++..+|++.++. || .|..|+...-+ . ..--|||.+....+|......
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHh
Confidence 47889999999999998 66 67778776554 2 223599999998888877654
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=53.54 E-value=60 Score=23.05 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=40.1
Q ss_pred EEcCCCCCCCHHHHHHHHHh-cC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 020607 116 YVGNLPYSMTSSSLAEVFAE-AG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (323)
Q Consensus 116 fV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~ 173 (323)
|+-..+.+++..+|++.++. || .|..|+...-+ . ..--|||.+.....|...-..
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHh
Confidence 34458899999999999998 66 67777776554 2 223599999888877766544
No 233
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=53.21 E-value=2.2 Score=41.31 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=59.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
.|+++|+|++.+.+-.+|..+|+.+-.+..+.+..+....+....++|.|.---....|+.+||+..+....+.-.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se~ 306 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSES 306 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccccc
Confidence 4789999999999999999999999777777665443333456678999998777788888888887766555433
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=45.44 E-value=3.5 Score=39.96 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=54.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
...+++|++|+++..+-++|..+...+--+.++.+.......+...+++|.|..--++..|+-.||+..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 34567999999999999999999998866666555443333445567899999888888888888877654
No 235
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.88 E-value=25 Score=32.73 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=48.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCc-eEEEEeecCCC--CCceeEEEEEECCHHHHHHHHHHhCCcccC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~--~~~~g~afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
....|.|.+||...++.+|..-...|-.- ........... ..-.+.|||.|...+++......++|.+|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 34568999999999999998877775422 22222211111 122567999999999999888888888763
No 236
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.86 E-value=23 Score=32.41 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=27.2
Q ss_pred EEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCC
Q 020607 260 GFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 297 (323)
Q Consensus 260 afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~ 297 (323)
|||+|++..+|..|++.+.... ++.++++.|-+..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999999665544 35557777766544
No 237
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.11 E-value=6 Score=37.36 Aligned_cols=76 Identities=4% Similarity=-0.133 Sum_probs=61.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
.-|+..+|...+++++..+|..||.|.-+.+.+.-..|...-.+|+.-.. .++..++..+-...+.|..++|.++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45788999999999999999999999888876666567777788888764 56777777777777888888888765
No 238
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=38.98 E-value=61 Score=29.55 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=38.9
Q ss_pred EEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHh
Q 020607 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAF 236 (323)
Q Consensus 157 afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F 236 (323)
|||.|++..+|..|.+.+.... ++.+.|..+. ++..|.=.||.....+..+|.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP-----------------------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP-----------------------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC-----------------------CcccccccccCCChHHHHHHHHH
Confidence 7999999999999999544333 2444555443 33557778887777777777665
Q ss_pred c
Q 020607 237 Q 237 (323)
Q Consensus 237 ~ 237 (323)
.
T Consensus 56 ~ 56 (325)
T PF02714_consen 56 V 56 (325)
T ss_pred H
Confidence 3
No 239
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=35.90 E-value=1.3e+02 Score=22.48 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHh-cCCceEEEEeecCCC----CCceeEEEEEECCHHHHHHHH
Q 020607 123 SMTSSSLAEVFAE-AGTVASAEIVYDRVT----DRSRGFGFVTMGSVEEAKEAI 171 (323)
Q Consensus 123 ~~te~~l~~~F~~-~G~i~~v~i~~~~~~----~~~~g~afv~F~~~~~a~~A~ 171 (323)
..+..+|++-+.. |+.=.+..++..-.| |++.|||.| |.+.+.|++.-
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~E 82 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKIE 82 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhhC
Confidence 5567777766664 664333334333323 678888888 77777776543
No 240
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=35.13 E-value=97 Score=21.02 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCceEEEE
Q 020607 127 SSLAEVFAEAGTVASAEI 144 (323)
Q Consensus 127 ~~l~~~F~~~G~i~~v~i 144 (323)
.+||.+|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999875554
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.72 E-value=30 Score=30.81 Aligned_cols=84 Identities=19% Similarity=0.424 Sum_probs=54.3
Q ss_pred CCCCeEEEecCCCCC------------CHHHHHHHhccCCCccEEEEeeec-----CCCCccc-----E---------EE
Q 020607 213 DSPHKIYAGNLGWGL------------TSQGLRDAFQGQPGLLSAKVIFER-----YTGRSRG-----F---------GF 261 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~------------t~~~L~~~F~~~G~v~~i~i~~~~-----~~g~~~g-----~---------af 261 (323)
..+.+|++.++|-.| +++-|+..|..||.|..|.|+... .+|+..| | ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 456789999888543 567899999999999888775322 2344333 2 34
Q ss_pred EEeCCHHHHHHHHHHhCCcEe----CC----eeEEEEeecCCC
Q 020607 262 VTFETAEDLQSALDAMNGVEV----EG----RPLRLNMANERA 296 (323)
Q Consensus 262 V~F~~~e~A~~Al~~l~~~~i----~g----~~l~V~~a~~~~ 296 (323)
|+|....--..|+..|.|..+ .| -.|+|.|.+++.
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 555555566677777777544 22 356677766654
No 242
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.17 E-value=24 Score=33.14 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=48.5
Q ss_pred CeEEEecCCCCCCHH--------HHHHHhcc--CCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHH
Q 020607 216 HKIYAGNLGWGLTSQ--------GLRDAFQG--QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~--------~L~~~F~~--~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~ 275 (323)
+.+|+.+.+.....+ ++...|.. ++.+..++..++.....++|..|++|.....|.+.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 567777776655444 99999998 6778888888887677889999999999999999864
No 243
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.35 E-value=18 Score=33.91 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCCCeEEEcCCCCCCCHH--------HHHHHHHh--cCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHH
Q 020607 110 DEAARLYVGNLPYSMTSS--------SLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~--------~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~ 172 (323)
...+.+|+.+........ ++...|.. .+++..|+..++.....++|..|++|...+.++++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345678888887766655 89999998 6788899999888788899999999999999999885
No 244
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.33 E-value=92 Score=29.15 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=47.3
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCC-ccEEEEeeecCC--CCcccEEEEEeCCHHHHHHHHHHhCCcEe
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYT--GRSRGFGFVTFETAEDLQSALDAMNGVEV 282 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~-v~~i~i~~~~~~--g~~~g~afV~F~~~e~A~~Al~~l~~~~i 282 (323)
.+.+.|.+||..+++.++.+-...+-. +....+.+...+ ..-.+.|+|.|..+++...-...++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467999999999999999888776522 222233322111 12257799999999998777777788766
No 245
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.11 E-value=9.9 Score=35.97 Aligned_cols=78 Identities=4% Similarity=-0.210 Sum_probs=59.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
.+.++..+|...++.++.-+|..||.|.-+..-+....|...-.+||.-.. ..|..+++.+.-..+.|-.++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 356778899999999999999999999888877777677777788887654 456667766666666777777776554
No 246
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=25.68 E-value=97 Score=22.64 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=23.6
Q ss_pred EEEEeCCHHHHHHHHHHh-CCcEeCCeeEEEEe
Q 020607 260 GFVTFETAEDLQSALDAM-NGVEVEGRPLRLNM 291 (323)
Q Consensus 260 afV~F~~~e~A~~Al~~l-~~~~i~g~~l~V~~ 291 (323)
|.|+|.....|.+.++.- +...++++.+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999988743 33446777766654
No 247
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.49 E-value=80 Score=21.81 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=21.3
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCcEeC
Q 020607 258 GFGFVTFETAEDLQSALDAMNGVEVE 283 (323)
Q Consensus 258 g~afV~F~~~e~A~~Al~~l~~~~i~ 283 (323)
.+.+|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46899999999999999988665443
No 248
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.31 E-value=1e+02 Score=21.29 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=23.7
Q ss_pred eEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 155 g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
.+.+|.|.+..+|.+|-+.|....+.++-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 478999999999999999887666644443
No 249
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=24.26 E-value=3.2e+02 Score=27.34 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=58.9
Q ss_pred eEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCccccC---CCCccCC-CCCccCCCCeEEEecCCCCCCHH
Q 020607 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM---GPKLQNS-YQGFVDSPHKIYAGNLGWGLTSQ 230 (323)
Q Consensus 155 g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~l~V~nlp~~~t~~ 230 (323)
--||+++.++..-.-..+.|+..-+.+-.|.-.-+..-+.-+.... +....+- ..+.......+|+.+|..++.++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 3699999998887777777776665544443211110000000000 0000000 00112235689999999998888
Q ss_pred HHHHHhccCCCccEEEEeeecCCCCcccEEEEEeC
Q 020607 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265 (323)
Q Consensus 231 ~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~ 265 (323)
-=.++....-+.+.+.+++. ||| |+|.
T Consensus 317 VQ~~~irsipGlEna~i~rp-------gYA-IEYD 343 (621)
T COG0445 317 VQEQIIRSIPGLENAEILRP-------GYA-IEYD 343 (621)
T ss_pred HHHHHHHhCcccccceeecc-------cee-eeec
Confidence 77777777777888888743 677 6665
No 250
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=23.58 E-value=1.1e+02 Score=27.72 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=58.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecC-------CCCcccEEEEEeCCHHHHHH----HHHHhCC--cE
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY-------TGRSRGFGFVTFETAEDLQS----ALDAMNG--VE 281 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~-------~g~~~g~afV~F~~~e~A~~----Al~~l~~--~~ 281 (323)
.+.|.+.|+...++--.+...|-+||.|+.|.++.+.. ..+......+-|-+.+.|.. .++.|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999998888899999999999999987651 12234678899999987754 2333322 44
Q ss_pred eCCeeEEEEeecC
Q 020607 282 VEGRPLRLNMANE 294 (323)
Q Consensus 282 i~g~~l~V~~a~~ 294 (323)
+....|.|+|..-
T Consensus 95 L~S~~L~lsFV~l 107 (309)
T PF10567_consen 95 LKSESLTLSFVSL 107 (309)
T ss_pred cCCcceeEEEEEE
Confidence 6677777777653
No 251
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.33 E-value=1.1e+02 Score=27.14 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR 148 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 148 (323)
.....|+||||.++..-|.+++...-.+....++..+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Qk 131 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQK 131 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHH
Confidence 4578899999999999999999976666555555443
No 252
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.30 E-value=98 Score=25.86 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=42.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEeecCCC-CCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~-~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
.++++.. .|+++|..+..= -|.+.+|.+.+.... ...+|-.||+|.+.++|.++++. +........+.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~ 180 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELK 180 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHH
Confidence 3455555 455555544331 278888877554311 25678999999999999998875 44444433333
No 253
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.21 E-value=1.2e+02 Score=21.70 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=22.4
Q ss_pred CCceeEEEEEECCHHHHHHHHHHhCCcc
Q 020607 151 DRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (323)
Q Consensus 151 ~~~~g~afv~F~~~~~a~~A~~~l~~~~ 178 (323)
+.-+||-||+=.++.++..|++.+.+..
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3468999999999999999998765443
No 254
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=22.89 E-value=2.5e+02 Score=22.24 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHh-cC-CceEEEEeecCC----CCCceeEEEEEECCHHHHHHH
Q 020607 123 SMTSSSLAEVFAE-AG-TVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEA 170 (323)
Q Consensus 123 ~~te~~l~~~F~~-~G-~i~~v~i~~~~~----~~~~~g~afv~F~~~~~a~~A 170 (323)
..+..+|++-+.. |+ .=.+..++..-. .|++.|||.| |.+.+.|.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 5677888877765 65 222333322222 3678899988 7777766553
No 255
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.83 E-value=1e+02 Score=26.98 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 140 (323)
.......++|+-|+|..+|++-|.++...+|-+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 3345567899999999999999999999998554
Done!