Query 020607
Match_columns 323
No_of_seqs 304 out of 2009
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.6E-36 9E-41 260.6 19.9 171 109-296 12-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 9.9E-36 3.4E-40 245.7 21.4 166 113-294 1-166 (166)
3 1b7f_A Protein (SXL-lethal pro 100.0 1.9E-35 6.6E-40 244.7 20.4 165 111-292 2-168 (168)
4 1fxl_A Paraneoplastic encephal 100.0 3.3E-35 1.1E-39 242.8 21.3 165 111-292 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 2.6E-35 8.8E-40 250.2 20.9 180 109-301 10-189 (196)
6 2qfj_A FBP-interacting repress 100.0 7.4E-36 2.5E-40 257.4 17.4 185 112-302 28-212 (216)
7 2cjk_A Nuclear polyadenylated 100.0 1.8E-35 6E-40 244.9 12.6 165 111-295 2-166 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 7.3E-34 2.5E-38 236.7 19.6 166 111-293 2-175 (175)
9 1fje_B Nucleolin RBD12, protei 100.0 1.1E-33 3.9E-38 236.0 14.3 167 108-296 9-175 (175)
10 3smz_A Protein raver-1, ribonu 100.0 1.9E-32 6.4E-37 246.3 23.2 175 109-298 92-267 (284)
11 2yh0_A Splicing factor U2AF 65 100.0 1.9E-32 6.5E-37 232.8 21.9 182 110-298 2-197 (198)
12 2g4b_A Splicing factor U2AF 65 100.0 9.7E-33 3.3E-37 229.4 19.1 159 111-293 3-172 (172)
13 3tyt_A Heterogeneous nuclear r 100.0 2.7E-32 9.1E-37 233.9 18.4 176 110-292 2-204 (205)
14 2ghp_A U4/U6 snRNA-associated 100.0 3.5E-32 1.2E-36 245.5 19.0 176 109-296 114-292 (292)
15 2adc_A Polypyrimidine tract-bi 100.0 1.5E-31 5E-36 233.3 21.3 177 109-295 31-228 (229)
16 3pgw_A U1-A; protein-RNA compl 100.0 1.2E-31 4.2E-36 240.7 21.4 179 108-294 5-282 (282)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.2E-31 4.1E-36 228.3 17.2 174 112-295 3-197 (198)
18 3smz_A Protein raver-1, ribonu 100.0 1.4E-31 4.8E-36 240.5 18.1 159 110-298 20-178 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 3.9E-31 1.3E-35 238.6 18.8 166 105-298 34-200 (292)
20 3sde_A Paraspeckle component 1 100.0 1.5E-30 5E-35 231.4 19.9 161 107-297 17-181 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.7E-24 5.9E-29 177.6 15.2 153 141-299 2-154 (158)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.1E-23 3.9E-28 199.4 13.9 167 25-192 2-182 (437)
23 4f25_A Polyadenylate-binding p 99.9 2.2E-22 7.7E-27 156.2 11.0 109 112-231 5-113 (115)
24 2i2y_A Fusion protein consists 99.9 2.2E-22 7.5E-27 163.7 11.1 140 150-296 9-149 (150)
25 4fxv_A ELAV-like protein 1; RN 99.9 2.7E-21 9.3E-26 146.0 11.2 81 214-294 18-98 (99)
26 4fxv_A ELAV-like protein 1; RN 99.8 8.2E-21 2.8E-25 143.3 11.4 81 110-190 17-97 (99)
27 2lxi_A RNA-binding protein 10; 99.8 1E-20 3.4E-25 140.6 7.7 83 216-298 2-86 (91)
28 2lkz_A RNA-binding protein 5; 99.8 2.6E-20 8.7E-25 139.3 8.8 81 214-294 8-94 (95)
29 3s8s_A Histone-lysine N-methyl 99.8 8.4E-20 2.9E-24 140.4 11.7 84 213-296 4-87 (110)
30 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.4E-20 1.5E-24 152.5 10.8 142 159-300 11-157 (165)
31 2lea_A Serine/arginine-rich sp 99.8 1.9E-20 6.5E-25 149.4 7.9 127 155-299 5-131 (135)
32 2lxi_A RNA-binding protein 10; 99.8 2.2E-20 7.7E-25 138.7 7.7 82 112-193 1-84 (91)
33 3s8s_A Histone-lysine N-methyl 99.8 1E-19 3.5E-24 139.9 11.6 82 110-191 4-85 (110)
34 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-19 4.3E-24 133.2 10.7 84 213-296 4-87 (87)
35 3p5t_L Cleavage and polyadenyl 99.8 2.9E-20 9.8E-25 137.8 6.6 84 216-299 2-87 (90)
36 2dgo_A Cytotoxic granule-assoc 99.8 4.7E-19 1.6E-23 137.3 13.6 91 212-302 12-102 (115)
37 2cq0_A Eukaryotic translation 99.8 3.6E-19 1.2E-23 135.1 12.7 88 212-299 12-99 (103)
38 3md1_A Nuclear and cytoplasmic 99.8 2.6E-19 9E-24 130.3 11.3 81 216-296 2-82 (83)
39 2cpz_A CUG triplet repeat RNA- 99.8 4.5E-19 1.5E-23 137.4 12.9 90 212-301 22-111 (115)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.4E-19 1.2E-23 135.0 12.0 89 212-300 9-97 (102)
41 2dnz_A Probable RNA-binding pr 99.8 2.9E-19 1E-23 133.5 11.5 89 213-301 3-91 (95)
42 2lkz_A RNA-binding protein 5; 99.8 5E-20 1.7E-24 137.7 6.8 81 110-190 7-93 (95)
43 1whw_A Hypothetical protein ri 99.8 3.2E-19 1.1E-23 134.4 11.4 88 213-300 6-93 (99)
44 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.8E-19 9.7E-24 130.7 10.2 81 213-293 5-85 (85)
45 2x1f_A MRNA 3'-END-processing 99.8 3.6E-19 1.2E-23 133.4 10.9 86 215-300 2-87 (96)
46 1x5t_A Splicing factor 3B subu 99.8 4.2E-19 1.4E-23 132.9 11.0 86 214-299 4-90 (96)
47 2cqc_A Arginine/serine-rich sp 99.8 6E-19 2E-23 131.8 11.8 83 212-294 12-94 (95)
48 2jrs_A RNA-binding protein 39; 99.8 4.3E-19 1.5E-23 136.0 11.2 87 211-297 22-108 (108)
49 2cpf_A RNA binding motif prote 99.8 4.1E-19 1.4E-23 133.5 10.9 88 214-301 4-94 (98)
50 2dgs_A DAZ-associated protein 99.8 6.4E-19 2.2E-23 132.8 11.9 87 213-300 8-94 (99)
51 4f25_A Polyadenylate-binding p 99.8 3.5E-19 1.2E-23 138.1 10.7 83 215-299 5-87 (115)
52 1x5s_A Cold-inducible RNA-bind 99.8 4.1E-19 1.4E-23 134.6 10.8 89 212-300 9-97 (102)
53 2e5h_A Zinc finger CCHC-type a 99.8 9.9E-19 3.4E-23 130.4 12.5 82 212-293 13-94 (94)
54 1x4h_A RNA-binding protein 28; 99.8 8.9E-19 3E-23 134.7 12.6 90 212-301 12-107 (111)
55 1p27_B RNA-binding protein 8A; 99.8 3.4E-19 1.2E-23 135.9 10.2 86 213-298 21-106 (106)
56 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-18 4.7E-23 134.6 13.7 89 108-196 11-99 (115)
57 3p5t_L Cleavage and polyadenyl 99.8 1.3E-19 4.6E-24 134.2 7.5 80 113-192 2-83 (90)
58 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.5E-19 1.5E-23 130.2 10.3 82 110-191 4-85 (87)
59 2do4_A Squamous cell carcinoma 99.8 1.2E-18 4.2E-23 131.5 12.8 84 213-297 15-98 (100)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.6E-19 1.6E-23 129.6 10.1 82 109-190 4-85 (85)
61 3md1_A Nuclear and cytoplasmic 99.8 7.6E-19 2.6E-23 127.8 11.2 80 113-192 2-81 (83)
62 2dnm_A SRP46 splicing factor; 99.8 3.8E-19 1.3E-23 135.0 9.9 89 212-300 10-98 (103)
63 2d9p_A Polyadenylate-binding p 99.8 9.7E-19 3.3E-23 132.7 12.1 89 212-302 12-100 (103)
64 1x5u_A Splicing factor 3B subu 99.8 7.2E-19 2.5E-23 133.9 11.4 88 212-299 12-99 (105)
65 2x1f_A MRNA 3'-END-processing 99.8 6E-19 2E-23 132.2 10.7 83 111-193 1-83 (96)
66 2cph_A RNA binding motif prote 99.8 9.4E-19 3.2E-23 133.7 12.0 89 212-300 12-102 (107)
67 1whw_A Hypothetical protein ri 99.8 9.4E-19 3.2E-23 131.8 11.7 86 109-194 5-90 (99)
68 2dnz_A Probable RNA-binding pr 99.8 1E-18 3.5E-23 130.6 11.7 85 110-194 3-87 (95)
69 2dng_A Eukaryotic translation 99.8 1.4E-18 4.7E-23 131.9 12.6 87 212-300 12-98 (103)
70 2la6_A RNA-binding protein FUS 99.8 9.4E-19 3.2E-23 131.9 11.4 82 212-293 10-99 (99)
71 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-18 4.8E-23 134.6 12.6 85 110-194 23-107 (115)
72 2cpe_A RNA-binding protein EWS 99.8 1.5E-18 5.1E-23 134.0 12.4 88 212-299 12-107 (113)
73 2div_A TRNA selenocysteine ass 99.8 7.6E-19 2.6E-23 132.3 10.5 86 213-298 7-97 (99)
74 2cq0_A Eukaryotic translation 99.8 7.4E-19 2.5E-23 133.4 10.4 87 108-194 11-97 (103)
75 2cqp_A RNA-binding protein 12; 99.8 9.5E-19 3.3E-23 131.5 10.8 84 213-296 13-96 (98)
76 2cqc_A Arginine/serine-rich sp 99.8 1.1E-18 3.8E-23 130.3 11.1 84 107-190 10-93 (95)
77 2do4_A Squamous cell carcinoma 99.8 1.8E-18 6.2E-23 130.5 12.3 85 108-193 13-97 (100)
78 2cpf_A RNA binding motif prote 99.8 1.3E-18 4.6E-23 130.7 11.4 85 110-194 3-90 (98)
79 2dnh_A Bruno-like 5, RNA bindi 99.8 1.9E-18 6.7E-23 131.5 12.5 86 213-299 13-101 (105)
80 2dgs_A DAZ-associated protein 99.8 1.4E-18 4.8E-23 130.9 11.5 86 108-194 6-91 (99)
81 1oo0_B CG8781-PA, drosophila Y 99.8 9.6E-19 3.3E-23 134.4 10.5 86 213-298 24-109 (110)
82 1x5t_A Splicing factor 3B subu 99.8 9.7E-19 3.3E-23 130.9 10.3 85 110-194 3-88 (96)
83 1p27_B RNA-binding protein 8A; 99.8 1E-18 3.5E-23 133.3 10.4 84 108-191 19-102 (106)
84 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8.6E-19 3E-23 132.7 9.8 88 108-195 8-95 (102)
85 1x4h_A RNA-binding protein 28; 99.8 2.7E-18 9.1E-23 132.0 12.7 87 108-194 11-103 (111)
86 2la6_A RNA-binding protein FUS 99.8 1.6E-18 5.6E-23 130.5 11.2 84 107-190 8-99 (99)
87 1x5u_A Splicing factor 3B subu 99.8 1.6E-18 5.6E-23 131.9 11.1 88 107-194 10-97 (105)
88 2khc_A Testis-specific RNP-typ 99.8 1.7E-18 5.7E-23 134.8 11.3 82 212-293 37-118 (118)
89 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-18 4E-23 132.0 10.2 87 108-194 8-94 (102)
90 2fy1_A RNA-binding motif prote 99.8 2.7E-18 9.4E-23 133.3 12.5 85 109-194 4-88 (116)
91 4a8x_A RNA-binding protein wit 99.8 1.2E-18 4.1E-23 128.1 9.8 84 214-297 3-87 (88)
92 2dnm_A SRP46 splicing factor; 99.8 9.3E-19 3.2E-23 132.9 9.4 87 108-194 9-95 (103)
93 2fy1_A RNA-binding motif prote 99.8 2.1E-18 7.2E-23 133.9 11.6 85 213-298 5-89 (116)
94 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-18 4.5E-23 129.7 10.0 83 108-190 12-94 (94)
95 2jrs_A RNA-binding protein 39; 99.8 1.7E-18 5.7E-23 132.7 10.8 85 108-192 22-106 (108)
96 2cq3_A RNA-binding protein 9; 99.8 6.4E-18 2.2E-22 128.2 13.9 88 212-301 12-99 (103)
97 1wi8_A EIF-4B, eukaryotic tran 99.8 2.6E-18 8.8E-23 130.6 11.6 85 213-299 13-98 (104)
98 3ns6_A Eukaryotic translation 99.8 2E-19 7E-24 135.9 5.4 81 215-295 6-93 (100)
99 2hvz_A Splicing factor, argini 99.8 1E-18 3.5E-23 132.1 9.3 100 113-224 1-100 (101)
100 2dgp_A Bruno-like 4, RNA bindi 99.8 1.5E-18 5.1E-23 132.4 10.2 88 212-299 10-100 (106)
101 2dgx_A KIAA0430 protein; RRM d 99.8 2.1E-18 7.3E-23 129.2 10.8 83 213-298 7-93 (96)
102 3s7r_A Heterogeneous nuclear r 99.8 2.3E-18 7.7E-23 126.5 10.7 81 108-189 7-87 (87)
103 3ns6_A Eukaryotic translation 99.8 3.6E-19 1.2E-23 134.5 6.5 80 111-190 5-91 (100)
104 2kxn_B Transformer-2 protein h 99.8 1.2E-18 4.2E-23 137.7 9.8 86 212-297 43-128 (129)
105 3ucg_A Polyadenylate-binding p 99.8 1.7E-18 5.9E-23 127.6 10.0 81 215-296 6-86 (89)
106 1oo0_B CG8781-PA, drosophila Y 99.8 1.3E-18 4.5E-23 133.6 9.7 86 107-192 21-106 (110)
107 2cph_A RNA binding motif prote 99.8 3.2E-18 1.1E-22 130.7 11.6 87 108-194 11-99 (107)
108 3ucg_A Polyadenylate-binding p 99.8 2.5E-18 8.4E-23 126.8 10.5 80 112-192 6-85 (89)
109 2dnh_A Bruno-like 5, RNA bindi 99.8 4E-18 1.4E-22 129.7 12.0 85 109-194 12-99 (105)
110 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-18 7.7E-23 131.4 10.6 87 108-194 9-98 (106)
111 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.9E-18 2E-22 128.4 12.8 86 212-299 12-97 (103)
112 2dhg_A TRNA selenocysteine ass 99.8 1.7E-18 5.7E-23 131.6 9.7 88 213-301 7-96 (104)
113 2cqd_A RNA-binding region cont 99.8 4.2E-18 1.4E-22 132.1 12.2 89 212-301 14-102 (116)
114 2do0_A HnRNP M, heterogeneous 99.8 1.2E-17 4E-22 129.1 14.5 86 212-298 12-97 (114)
115 2dgw_A Probable RNA-binding pr 99.8 7.1E-18 2.4E-22 125.0 12.6 82 213-297 8-89 (91)
116 2div_A TRNA selenocysteine ass 99.8 2.5E-18 8.4E-23 129.5 10.2 84 109-192 6-94 (99)
117 2dhg_A TRNA selenocysteine ass 99.8 5.4E-18 1.8E-22 128.8 12.2 86 108-194 5-92 (104)
118 2kxn_B Transformer-2 protein h 99.8 2.1E-18 7.2E-23 136.4 10.2 86 107-192 41-126 (129)
119 2dgv_A HnRNP M, heterogeneous 99.8 2.6E-18 9E-23 127.5 10.1 85 213-299 6-90 (92)
120 2m2b_A RNA-binding protein 10; 99.8 1.6E-18 5.4E-23 137.5 9.4 89 212-301 20-114 (131)
121 2ek1_A RNA-binding protein 12; 99.8 1.6E-18 5.3E-23 129.5 8.8 82 213-294 13-94 (95)
122 2cpe_A RNA-binding protein EWS 99.8 3.4E-18 1.2E-22 132.0 10.9 87 108-194 11-105 (113)
123 2dng_A Eukaryotic translation 99.8 4.1E-18 1.4E-22 129.3 11.2 85 108-194 11-95 (103)
124 3n9u_C Cleavage and polyadenyl 99.8 3.2E-18 1.1E-22 139.8 11.2 80 111-190 54-135 (156)
125 2d9p_A Polyadenylate-binding p 99.8 4.6E-18 1.6E-22 129.0 11.2 85 108-194 11-95 (103)
126 2ywk_A Putative RNA-binding pr 99.8 3.5E-18 1.2E-22 127.6 10.4 81 109-190 13-93 (95)
127 2cqg_A TDP-43, TAR DNA-binding 99.8 1.1E-17 3.9E-22 126.8 13.3 88 212-301 12-99 (103)
128 2ywk_A Putative RNA-binding pr 99.8 2.8E-18 9.4E-23 128.2 9.7 81 213-294 14-94 (95)
129 2dh8_A DAZ-associated protein 99.8 2.7E-18 9.2E-23 130.7 9.8 88 212-300 13-100 (105)
130 3lqv_A PRE-mRNA branch site pr 99.8 5.8E-19 2E-23 136.7 6.2 105 109-241 5-109 (115)
131 4a8x_A RNA-binding protein wit 99.8 2.5E-18 8.7E-23 126.4 9.3 82 111-192 3-85 (88)
132 3s7r_A Heterogeneous nuclear r 99.8 5.4E-18 1.8E-22 124.5 11.0 79 213-292 9-87 (87)
133 1u6f_A Tcubp1, RNA-binding pro 99.8 9E-18 3.1E-22 134.4 13.3 86 109-194 39-124 (139)
134 3ulh_A THO complex subunit 4; 99.8 5.1E-18 1.7E-22 129.6 11.2 82 212-294 26-107 (107)
135 1p1t_A Cleavage stimulation fa 99.8 2.3E-18 8E-23 130.8 9.2 85 214-298 7-91 (104)
136 3pgw_S U1-70K; protein-RNA com 99.8 1.1E-19 3.8E-24 172.0 2.1 86 213-298 100-185 (437)
137 2rs2_A Musashi-1, RNA-binding 99.8 5.1E-18 1.7E-22 130.2 11.0 86 212-298 22-107 (109)
138 2mss_A Protein (musashi1); RNA 99.8 1.6E-18 5.4E-23 123.7 7.4 75 114-189 1-75 (75)
139 2dh8_A DAZ-associated protein 99.8 4.7E-18 1.6E-22 129.4 10.5 86 108-194 12-97 (105)
140 3n9u_C Cleavage and polyadenyl 99.8 3.7E-18 1.3E-22 139.4 10.5 82 214-295 54-137 (156)
141 2kt5_A RNA and export factor-b 99.8 9.2E-18 3.2E-22 131.8 12.4 89 212-301 32-120 (124)
142 2cqd_A RNA-binding region cont 99.8 9E-18 3.1E-22 130.2 12.2 85 108-193 13-97 (116)
143 1u6f_A Tcubp1, RNA-binding pro 99.8 8.8E-18 3E-22 134.5 12.5 88 212-299 39-126 (139)
144 1wi8_A EIF-4B, eukaryotic tran 99.8 4.2E-18 1.4E-22 129.5 10.0 85 109-195 12-97 (104)
145 2do0_A HnRNP M, heterogeneous 99.8 1.6E-17 5.5E-22 128.3 13.4 85 108-193 11-95 (114)
146 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.4E-17 4.8E-22 126.3 12.8 85 108-194 11-95 (103)
147 2fc9_A NCL protein; structure 99.7 1.1E-17 3.9E-22 126.3 12.2 85 212-300 12-96 (101)
148 2mss_A Protein (musashi1); RNA 99.7 1.6E-18 5.4E-23 123.7 7.0 75 217-292 1-75 (75)
149 2ki2_A SS-DNA binding protein 99.7 5.2E-19 1.8E-23 130.8 4.5 86 216-302 2-87 (90)
150 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.3E-18 4.5E-23 131.4 6.8 83 212-296 16-99 (100)
151 1s79_A Lupus LA protein; RRM, 99.7 2.3E-18 7.8E-23 130.7 8.2 78 111-190 10-87 (103)
152 1p1t_A Cleavage stimulation fa 99.7 4E-18 1.4E-22 129.4 9.5 84 111-194 7-90 (104)
153 2cpi_A CCR4-NOT transcription 99.7 8.2E-18 2.8E-22 129.5 11.4 85 213-297 13-103 (111)
154 2khc_A Testis-specific RNP-typ 99.7 2.1E-18 7.1E-23 134.2 8.1 81 110-190 38-118 (118)
155 1x4b_A Heterogeneous nuclear r 99.7 7.2E-18 2.5E-22 130.8 11.1 87 214-301 26-112 (116)
156 3ulh_A THO complex subunit 4; 99.7 7E-18 2.4E-22 128.9 10.6 82 108-190 25-106 (107)
157 2cqp_A RNA-binding protein 12; 99.7 3.1E-18 1.1E-22 128.7 8.5 84 109-192 12-95 (98)
158 3ex7_B RNA-binding protein 8A; 99.7 3.5E-18 1.2E-22 134.5 9.2 88 213-300 20-107 (126)
159 2m2b_A RNA-binding protein 10; 99.7 2E-18 6.7E-23 137.0 7.7 84 110-194 21-110 (131)
160 1x4e_A RNA binding motif, sing 99.7 1.2E-18 4.1E-23 127.4 6.0 81 110-190 3-83 (85)
161 1sjq_A Polypyrimidine tract-bi 99.7 3.2E-18 1.1E-22 129.5 8.5 82 212-299 13-96 (105)
162 2cq1_A PTB-like protein L; RRM 99.7 1.9E-17 6.5E-22 125.0 12.7 82 212-299 12-95 (101)
163 2rs2_A Musashi-1, RNA-binding 99.7 5.5E-18 1.9E-22 130.0 9.9 84 109-193 22-105 (109)
164 2ek1_A RNA-binding protein 12; 99.7 2.5E-18 8.6E-23 128.4 7.7 80 111-190 14-93 (95)
165 2cqg_A TDP-43, TAR DNA-binding 99.7 2.3E-17 8E-22 125.0 13.1 85 108-194 11-95 (103)
166 1x4e_A RNA binding motif, sing 99.7 1E-18 3.5E-23 127.8 5.3 82 213-294 3-84 (85)
167 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-17 4.1E-22 123.9 11.1 83 109-193 5-87 (92)
168 2dis_A Unnamed protein product 99.7 4.5E-18 1.5E-22 130.3 9.0 86 214-299 7-96 (109)
169 2cq3_A RNA-binding protein 9; 99.7 2.2E-17 7.4E-22 125.2 12.6 86 107-194 10-95 (103)
170 1x4d_A Matrin 3; structural ge 99.7 5.5E-18 1.9E-22 128.0 9.1 81 212-298 12-95 (102)
171 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.3E-17 4.5E-22 136.2 12.1 87 108-194 35-121 (156)
172 1x4a_A Splicing factor, argini 99.7 3.3E-17 1.1E-21 125.5 13.5 86 212-300 19-104 (109)
173 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.6E-18 8.8E-23 123.1 6.8 76 216-292 1-76 (77)
174 1s79_A Lupus LA protein; RRM, 99.7 3.5E-18 1.2E-22 129.7 7.9 79 214-294 10-88 (103)
175 2wbr_A GW182, gawky, LD47780P; 99.7 8.7E-18 3E-22 121.7 9.5 74 214-293 6-79 (89)
176 2cpy_A RNA-binding protein 12; 99.7 7.3E-18 2.5E-22 130.4 9.8 83 212-296 12-95 (114)
177 1sjq_A Polypyrimidine tract-bi 99.7 1.2E-17 4E-22 126.4 10.5 80 109-194 13-94 (105)
178 2jwn_A Embryonic polyadenylate 99.7 1.2E-17 4E-22 131.1 10.7 84 214-298 35-118 (124)
179 2cq4_A RNA binding motif prote 99.7 3.9E-18 1.3E-22 131.9 7.8 83 214-297 24-106 (114)
180 3ex7_B RNA-binding protein 8A; 99.7 6.7E-18 2.3E-22 132.9 9.2 87 107-193 17-103 (126)
181 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.9E-17 6.5E-22 132.5 12.0 82 211-292 59-140 (140)
182 1h2v_Z 20 kDa nuclear CAP bind 99.7 2E-17 7E-22 135.1 12.4 86 213-298 37-122 (156)
183 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5.2E-22 127.5 10.9 83 212-296 26-108 (109)
184 2dgw_A Probable RNA-binding pr 99.7 1.8E-17 6.1E-22 122.8 10.9 81 109-192 7-87 (91)
185 3r27_A HnRNP L, heterogeneous 99.7 1.1E-17 3.8E-22 125.3 9.7 77 213-295 19-97 (100)
186 2wbr_A GW182, gawky, LD47780P; 99.7 1.1E-17 3.7E-22 121.2 9.3 73 111-189 6-78 (89)
187 2dgx_A KIAA0430 protein; RRM d 99.7 1.4E-17 4.8E-22 124.7 10.3 80 110-192 7-90 (96)
188 2jwn_A Embryonic polyadenylate 99.7 1.5E-17 5E-22 130.6 10.8 82 112-194 36-117 (124)
189 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.4E-18 8.2E-23 123.3 5.7 76 113-189 1-76 (77)
190 2fc8_A NCL protein; structure 99.7 4.1E-17 1.4E-21 123.4 12.8 86 212-300 12-97 (102)
191 2dis_A Unnamed protein product 99.7 1.7E-17 5.7E-22 127.2 10.6 86 109-194 5-94 (109)
192 1x4b_A Heterogeneous nuclear r 99.7 1.5E-17 5.3E-22 128.9 10.5 82 112-194 27-108 (116)
193 1wg5_A Heterogeneous nuclear r 99.7 1.9E-17 6.3E-22 126.0 10.7 82 213-296 13-95 (104)
194 3r27_A HnRNP L, heterogeneous 99.7 1.7E-17 5.8E-22 124.3 10.0 80 107-192 16-97 (100)
195 2ad9_A Polypyrimidine tract-bi 99.7 2.4E-17 8.3E-22 127.7 11.0 82 212-299 28-111 (119)
196 2dgt_A RNA-binding protein 30; 99.7 4.8E-17 1.6E-21 120.7 12.2 80 213-300 8-87 (92)
197 2db1_A Heterogeneous nuclear r 99.7 2.2E-17 7.5E-22 128.5 10.8 80 213-294 15-97 (118)
198 2kn4_A Immunoglobulin G-bindin 99.7 1.9E-17 6.6E-22 135.4 11.0 85 109-193 67-151 (158)
199 1x4a_A Splicing factor, argini 99.7 5.3E-17 1.8E-21 124.4 12.7 83 109-194 19-101 (109)
200 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-17 5.5E-22 137.0 10.5 85 109-193 69-153 (165)
201 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-17 4.2E-22 128.2 9.0 81 213-297 26-107 (111)
202 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.8E-18 1.3E-22 128.9 6.0 83 108-192 15-98 (100)
203 1wez_A HnRNP H', FTP-3, hetero 99.7 1.8E-17 6E-22 125.6 9.8 84 212-298 12-95 (102)
204 2dnq_A RNA-binding protein 4B; 99.7 3E-17 1E-21 121.3 10.8 80 213-300 6-85 (90)
205 1wel_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 131.1 9.1 83 212-295 22-104 (124)
206 2a3j_A U1 small nuclear ribonu 99.7 1.3E-17 4.5E-22 131.2 9.3 83 213-298 27-113 (127)
207 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.8E-17 6.1E-22 132.7 10.3 80 110-189 61-140 (140)
208 2nlw_A Eukaryotic translation 99.7 1.3E-17 4.3E-22 127.1 8.9 82 108-191 11-99 (105)
209 2ki2_A SS-DNA binding protein 99.7 2.1E-18 7.2E-23 127.5 4.4 79 113-192 2-80 (90)
210 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5E-22 127.7 9.2 82 109-192 26-107 (109)
211 1x5o_A RNA binding motif, sing 99.7 5.1E-17 1.7E-21 125.5 12.4 82 213-295 23-112 (114)
212 2kt5_A RNA and export factor-b 99.7 4E-17 1.4E-21 128.1 11.9 84 108-192 31-114 (124)
213 2cq4_A RNA binding motif prote 99.7 4.3E-18 1.5E-22 131.6 6.2 78 112-190 25-102 (114)
214 2nlw_A Eukaryotic translation 99.7 1.5E-17 5E-22 126.8 8.9 81 214-296 14-101 (105)
215 2cpx_A Hypothetical protein FL 99.7 1.1E-17 3.7E-22 129.5 8.0 88 213-300 23-110 (115)
216 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-17 8.9E-22 126.2 10.1 83 213-301 23-105 (109)
217 1wg5_A Heterogeneous nuclear r 99.7 1.5E-17 5E-22 126.5 8.6 81 109-191 12-93 (104)
218 2hgl_A HNRPF protein, heteroge 99.7 1.3E-17 4.3E-22 132.8 8.3 79 110-190 42-123 (136)
219 2cpi_A CCR4-NOT transcription 99.7 2.5E-17 8.6E-22 126.7 9.8 86 108-193 11-102 (111)
220 1x4d_A Matrin 3; structural ge 99.7 1E-17 3.6E-22 126.5 7.4 80 107-192 10-92 (102)
221 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-17 4E-22 126.6 7.7 81 109-192 12-92 (102)
222 1iqt_A AUF1, heterogeneous nuc 99.7 4.8E-18 1.6E-22 121.1 5.2 75 114-189 1-75 (75)
223 2cpd_A Apobec-1 stimulating pr 99.7 1.1E-16 3.9E-21 120.4 13.1 80 212-299 12-93 (99)
224 2hgl_A HNRPF protein, heteroge 99.7 2.1E-17 7.2E-22 131.5 9.5 80 213-294 42-124 (136)
225 2db1_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 129.7 8.2 80 109-190 14-96 (118)
226 2cpj_A Non-POU domain-containi 99.7 6.6E-17 2.3E-21 121.6 11.7 82 212-299 12-93 (99)
227 1x4f_A Matrin 3; structural ge 99.7 3.7E-17 1.3E-21 125.3 10.4 85 212-302 22-109 (112)
228 2cpy_A RNA-binding protein 12; 99.7 9.1E-18 3.1E-22 129.9 7.1 81 109-191 12-93 (114)
229 2krb_A Eukaryotic translation 99.7 8.6E-18 3E-22 121.8 6.4 73 113-187 2-81 (81)
230 1wex_A Hypothetical protein (r 99.7 4E-17 1.4E-21 124.0 10.3 80 213-298 13-94 (104)
231 2dnp_A RNA-binding protein 14; 99.7 5E-17 1.7E-21 120.1 10.6 78 213-298 7-84 (90)
232 1x5o_A RNA binding motif, sing 99.7 4.6E-17 1.6E-21 125.8 10.8 81 110-191 23-111 (114)
233 2lea_A Serine/arginine-rich sp 99.7 1E-17 3.5E-22 133.6 7.1 85 110-194 45-129 (135)
234 1fj7_A Nucleolin RBD1, protein 99.7 5.4E-18 1.8E-22 128.1 5.1 84 213-298 15-98 (101)
235 2dnn_A RNA-binding protein 12; 99.7 4.2E-17 1.4E-21 124.9 10.0 77 215-294 16-92 (109)
236 2e5j_A Methenyltetrahydrofolat 99.7 4.5E-17 1.5E-21 122.1 9.9 80 213-297 17-96 (97)
237 1x4c_A Splicing factor, argini 99.7 1.3E-16 4.3E-21 122.2 12.4 79 213-298 13-96 (108)
238 2ad9_A Polypyrimidine tract-bi 99.7 5.2E-17 1.8E-21 125.8 10.1 82 108-195 27-110 (119)
239 2la4_A Nuclear and cytoplasmic 99.7 4.5E-17 1.5E-21 123.0 9.5 76 214-295 26-101 (101)
240 1why_A Hypothetical protein ri 99.7 5.6E-17 1.9E-21 121.6 9.9 79 213-297 15-95 (97)
241 1whx_A Hypothetical protein ri 99.7 3.2E-17 1.1E-21 126.2 8.7 83 214-302 9-91 (111)
242 2jvr_A Nucleolar protein 3; RN 99.7 3.9E-17 1.3E-21 125.4 9.2 79 110-192 26-105 (111)
243 1nu4_A U1A RNA binding domain; 99.7 1.9E-17 6.6E-22 124.0 7.2 82 213-297 6-91 (97)
244 2ytc_A PRE-mRNA-splicing facto 99.7 8E-17 2.7E-21 117.6 10.3 75 213-293 10-85 (85)
245 2fc9_A NCL protein; structure 99.7 4.9E-17 1.7E-21 122.8 9.5 83 108-194 11-93 (101)
246 2a3j_A U1 small nuclear ribonu 99.7 5.8E-17 2E-21 127.5 10.1 81 109-192 26-110 (127)
247 2cpx_A Hypothetical protein FL 99.7 1.3E-17 4.3E-22 129.1 6.2 86 109-194 22-107 (115)
248 2jvo_A Nucleolar protein 3; nu 99.7 8E-17 2.7E-21 123.3 10.6 79 212-298 28-106 (108)
249 2lmi_A GRSF-1, G-rich sequence 99.7 1.2E-17 4E-22 127.7 5.8 81 213-295 9-92 (107)
250 2dgu_A Heterogeneous nuclear r 99.7 1.4E-16 4.9E-21 120.8 11.7 80 213-300 9-88 (103)
251 2dnq_A RNA-binding protein 4B; 99.7 1.3E-16 4.4E-21 117.9 11.1 78 109-194 5-82 (90)
252 2cq1_A PTB-like protein L; RRM 99.7 9.3E-17 3.2E-21 121.2 10.5 81 108-194 11-93 (101)
253 1wf1_A RNA-binding protein RAL 99.7 7.6E-17 2.6E-21 123.8 10.2 77 214-298 26-103 (110)
254 1iqt_A AUF1, heterogeneous nuc 99.7 8.1E-18 2.8E-22 119.9 4.3 75 217-292 1-75 (75)
255 1fj7_A Nucleolin RBD1, protein 99.7 6.9E-18 2.4E-22 127.5 3.9 81 110-192 15-95 (101)
256 2xnq_A Nuclear polyadenylated 99.7 1.2E-16 4.1E-21 119.9 10.7 77 212-296 19-96 (97)
257 2krb_A Eukaryotic translation 99.7 1.2E-17 4.2E-22 120.9 5.1 72 216-289 2-80 (81)
258 2dnn_A RNA-binding protein 12; 99.7 6E-17 2.1E-21 124.0 9.1 75 113-190 17-91 (109)
259 2fc8_A NCL protein; structure 99.7 1.4E-16 4.6E-21 120.5 11.0 85 107-194 10-94 (102)
260 1wex_A Hypothetical protein (r 99.7 9.3E-17 3.2E-21 121.9 10.0 80 109-194 12-93 (104)
261 1wel_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 131.1 5.3 81 109-190 22-102 (124)
262 1fjc_A Nucleolin RBD2, protein 99.7 5E-17 1.7E-21 121.5 8.4 81 213-298 14-94 (96)
263 2lmi_A GRSF-1, G-rich sequence 99.7 1.5E-17 5.3E-22 127.1 5.5 80 109-190 8-90 (107)
264 3q2s_C Cleavage and polyadenyl 99.7 4.2E-17 1.4E-21 141.5 8.9 80 111-190 67-148 (229)
265 2kvi_A Nuclear polyadenylated 99.7 7.1E-17 2.4E-21 120.8 9.0 80 213-300 8-88 (96)
266 1x4g_A Nucleolysin TIAR; struc 99.7 2.2E-16 7.5E-21 121.0 11.5 80 109-194 22-101 (109)
267 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.7E-21 119.0 9.6 80 213-299 6-87 (93)
268 3egn_A RNA-binding protein 40; 99.7 3.9E-17 1.3E-21 131.4 7.6 87 213-299 43-134 (143)
269 2e5j_A Methenyltetrahydrofolat 99.7 1.4E-16 4.8E-21 119.4 10.2 79 109-192 16-94 (97)
270 2hvz_A Splicing factor, argini 99.7 5.3E-17 1.8E-21 122.6 7.7 78 216-298 1-78 (101)
271 2dha_A FLJ20171 protein; RRM d 99.7 4.2E-17 1.4E-21 127.5 7.2 79 110-190 21-103 (123)
272 3q2s_C Cleavage and polyadenyl 99.7 4.7E-17 1.6E-21 141.2 8.1 81 214-294 67-149 (229)
273 2j8a_A Histone-lysine N-methyl 99.7 1.1E-16 3.8E-21 123.7 9.2 80 216-295 3-96 (136)
274 2lcw_A RNA-binding protein FUS 99.5 3E-18 1E-22 133.0 0.0 87 213-299 5-99 (116)
275 2jvo_A Nucleolar protein 3; nu 99.7 2E-16 6.8E-21 121.1 10.2 77 109-193 28-104 (108)
276 1x4c_A Splicing factor, argini 99.7 3.8E-16 1.3E-20 119.5 11.8 78 110-194 13-95 (108)
277 2la4_A Nuclear and cytoplasmic 99.7 1.7E-16 5.8E-21 119.8 9.7 75 111-191 26-100 (101)
278 2j8a_A Histone-lysine N-methyl 99.7 9.5E-17 3.2E-21 124.0 8.2 78 113-190 3-94 (136)
279 1why_A Hypothetical protein ri 99.7 2.4E-16 8E-21 118.2 10.3 78 109-192 14-93 (97)
280 2lcw_A RNA-binding protein FUS 99.5 3.2E-18 1.1E-22 132.8 0.0 87 109-195 4-98 (116)
281 1nu4_A U1A RNA binding domain; 99.7 5.9E-17 2E-21 121.4 6.8 81 109-192 5-89 (97)
282 2e44_A Insulin-like growth fac 99.7 1.6E-16 5.3E-21 118.8 9.1 80 214-297 14-94 (96)
283 2ytc_A PRE-mRNA-splicing facto 99.7 2.1E-16 7.3E-21 115.3 9.6 76 109-190 9-85 (85)
284 4f02_A Polyadenylate-binding p 99.7 2.2E-16 7.4E-21 135.6 11.2 84 213-296 13-96 (213)
285 3lqv_A PRE-mRNA branch site pr 99.7 1.6E-16 5.6E-21 122.8 9.4 82 213-297 6-87 (115)
286 2dha_A FLJ20171 protein; RRM d 99.7 5.6E-17 1.9E-21 126.8 6.7 80 213-294 21-104 (123)
287 2xnq_A Nuclear polyadenylated 99.7 3.7E-16 1.3E-20 117.2 10.9 77 107-191 17-94 (97)
288 2dgu_A Heterogeneous nuclear r 99.7 5.6E-16 1.9E-20 117.4 12.0 80 109-196 8-87 (103)
289 2cpd_A Apobec-1 stimulating pr 99.7 7.6E-16 2.6E-20 115.8 12.7 79 108-194 11-91 (99)
290 1x5p_A Negative elongation fac 99.7 8.4E-16 2.9E-20 115.1 12.8 80 213-300 13-92 (97)
291 2cpj_A Non-POU domain-containi 99.7 1.7E-16 5.9E-21 119.4 9.0 80 107-192 10-89 (99)
292 1fxl_A Paraneoplastic encephal 99.7 3.4E-16 1.2E-20 128.3 11.5 83 215-297 2-84 (167)
293 3zzy_A Polypyrimidine tract-bi 99.7 5.1E-16 1.7E-20 121.8 11.8 83 216-303 29-114 (130)
294 1wg1_A KIAA1579 protein, homol 99.7 4.6E-16 1.6E-20 114.4 10.9 78 214-298 4-81 (88)
295 1b7f_A Protein (SXL-lethal pro 99.7 2.9E-16 9.9E-21 129.0 10.8 85 214-298 2-86 (168)
296 2dnp_A RNA-binding protein 14; 99.7 5.1E-16 1.7E-20 114.6 11.0 78 108-193 5-82 (90)
297 2dgt_A RNA-binding protein 30; 99.7 5.6E-16 1.9E-20 114.9 11.2 79 108-194 6-84 (92)
298 2xs2_A Deleted in azoospermia- 99.7 6.4E-17 2.2E-21 122.4 6.1 82 214-298 8-89 (102)
299 2e5g_A U6 snRNA-specific termi 99.7 4.1E-16 1.4E-20 116.2 10.2 80 214-299 7-86 (94)
300 2f3j_A RNA and export factor b 99.7 2E-16 6.9E-21 131.8 9.4 86 212-298 85-170 (177)
301 2e5g_A U6 snRNA-specific termi 99.7 6E-16 2.1E-20 115.2 11.0 79 110-194 6-84 (94)
302 1fjc_A Nucleolin RBD2, protein 99.7 9.2E-17 3.2E-21 120.1 6.6 78 110-192 14-91 (96)
303 2diu_A KIAA0430 protein; struc 99.7 4.5E-16 1.5E-20 113.8 9.6 78 215-302 8-91 (96)
304 1x4f_A Matrin 3; structural ge 99.7 1.4E-16 4.9E-21 122.0 7.2 78 109-192 22-102 (112)
305 3egn_A RNA-binding protein 40; 99.7 5.5E-17 1.9E-21 130.5 5.1 87 107-193 40-131 (143)
306 2hgn_A Heterogeneous nuclear r 99.7 5.3E-17 1.8E-21 129.6 4.7 81 110-193 44-124 (139)
307 3md3_A Nuclear and cytoplasmic 99.7 7E-16 2.4E-20 126.2 11.4 83 108-190 83-165 (166)
308 2xs2_A Deleted in azoospermia- 99.7 1.2E-16 4.2E-21 120.8 6.3 78 111-191 8-85 (102)
309 2hgn_A Heterogeneous nuclear r 99.6 5.9E-17 2E-21 129.4 4.7 82 213-297 44-125 (139)
310 2hgm_A HNRPF protein, heteroge 99.6 1.2E-16 4E-21 125.3 6.1 78 110-190 40-119 (126)
311 2cqh_A IGF-II mRNA-binding pro 99.6 4E-16 1.4E-20 115.9 8.7 79 109-194 5-85 (93)
312 2hgm_A HNRPF protein, heteroge 99.6 1.3E-16 4.3E-21 125.2 6.2 79 213-294 40-120 (126)
313 1wf1_A RNA-binding protein RAL 99.6 5.7E-16 2E-20 118.8 9.7 76 111-194 26-102 (110)
314 2qfj_A FBP-interacting repress 99.6 8.5E-16 2.9E-20 131.5 11.7 85 110-194 123-207 (216)
315 2i2y_A Fusion protein consists 99.6 5.5E-16 1.9E-20 125.7 9.8 81 107-192 68-148 (150)
316 2f3j_A RNA and export factor b 99.6 3.8E-16 1.3E-20 130.1 8.9 83 108-191 84-166 (177)
317 2e5i_A Heterogeneous nuclear r 99.6 2.2E-15 7.7E-20 117.6 12.6 78 217-300 27-107 (124)
318 2kvi_A Nuclear polyadenylated 99.6 3E-16 1E-20 117.4 7.4 79 108-194 6-85 (96)
319 1sjr_A Polypyrimidine tract-bi 99.6 5E-16 1.7E-20 126.4 9.1 80 216-299 47-128 (164)
320 1whx_A Hypothetical protein ri 99.6 2.6E-16 9E-21 121.0 6.8 75 111-191 9-83 (111)
321 2g4b_A Splicing factor U2AF 65 99.6 1.2E-15 4.2E-20 125.8 10.7 79 111-189 93-171 (172)
322 1x5p_A Negative elongation fac 99.6 2.6E-15 9E-20 112.4 11.5 79 108-194 11-89 (97)
323 1wg1_A KIAA1579 protein, homol 99.6 7.3E-16 2.5E-20 113.3 8.1 75 110-191 3-77 (88)
324 2pe8_A Splicing factor 45; RRM 99.6 2.4E-15 8.2E-20 114.3 11.0 82 213-294 6-93 (105)
325 2cq2_A Hypothetical protein LO 99.6 6.9E-16 2.4E-20 118.3 8.0 79 213-297 23-108 (114)
326 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 4.8E-20 112.1 9.1 77 212-297 8-86 (89)
327 2e44_A Insulin-like growth fac 99.6 1.3E-15 4.3E-20 113.8 9.0 79 110-192 13-92 (96)
328 1l3k_A Heterogeneous nuclear r 99.6 1.6E-15 5.4E-20 127.8 10.3 86 213-299 11-96 (196)
329 2yh0_A Splicing factor U2AF 65 99.6 2.6E-15 8.7E-20 126.8 11.3 84 109-192 111-194 (198)
330 2dnl_A Cytoplasmic polyadenyla 99.6 1.5E-15 5.2E-20 117.3 9.1 78 109-189 5-85 (114)
331 2dnl_A Cytoplasmic polyadenyla 99.6 1.8E-15 6.1E-20 116.9 9.4 78 213-293 6-86 (114)
332 1sjr_A Polypyrimidine tract-bi 99.6 5E-15 1.7E-19 120.5 12.4 76 113-192 47-124 (164)
333 3beg_B Splicing factor, argini 99.6 9.3E-16 3.2E-20 118.7 7.5 78 214-298 15-97 (115)
334 2pe8_A Splicing factor 45; RRM 99.6 4.6E-15 1.6E-19 112.7 11.1 83 108-190 4-92 (105)
335 2cq2_A Hypothetical protein LO 99.6 1.6E-15 5.5E-20 116.3 8.5 77 108-190 21-104 (114)
336 3d2w_A TAR DNA-binding protein 99.6 2.1E-15 7.1E-20 111.2 8.7 76 108-192 7-84 (89)
337 3tyt_A Heterogeneous nuclear r 99.6 2.5E-15 8.5E-20 128.2 10.3 78 214-296 3-81 (205)
338 2diu_A KIAA0430 protein; struc 99.6 3.6E-15 1.2E-19 109.0 9.4 75 110-194 6-86 (96)
339 3zzy_A Polypyrimidine tract-bi 99.6 8.8E-15 3E-19 114.7 12.3 75 113-192 29-106 (130)
340 2hzc_A Splicing factor U2AF 65 99.6 2.2E-15 7.6E-20 110.3 8.4 72 110-188 4-86 (87)
341 2cjk_A Nuclear polyadenylated 99.6 1.2E-15 4.1E-20 125.3 7.7 80 111-191 86-165 (167)
342 2voo_A Lupus LA protein; RNA-b 99.6 7.1E-15 2.4E-19 124.2 12.5 123 163-295 63-187 (193)
343 2bz2_A Negative elongation fac 99.6 3.9E-15 1.3E-19 116.2 10.2 79 213-299 37-115 (121)
344 1wf0_A TDP-43, TAR DNA-binding 99.6 2.3E-15 7.8E-20 110.6 7.3 79 214-299 4-82 (88)
345 3nmr_A Cugbp ELAV-like family 99.6 5.7E-15 2E-19 121.9 10.3 79 111-190 94-175 (175)
346 3beg_B Splicing factor, argini 99.6 3.2E-15 1.1E-19 115.6 7.8 73 111-190 15-92 (115)
347 2voo_A Lupus LA protein; RNA-b 99.6 7.3E-15 2.5E-19 124.1 10.4 78 112-191 109-186 (193)
348 2hzc_A Splicing factor U2AF 65 99.6 4.4E-15 1.5E-19 108.7 7.7 71 214-291 5-86 (87)
349 1wf0_A TDP-43, TAR DNA-binding 99.6 2.7E-15 9.2E-20 110.2 6.4 78 110-194 3-80 (88)
350 2e5i_A Heterogeneous nuclear r 99.6 1.5E-14 5E-19 112.9 10.9 73 114-192 27-102 (124)
351 2dit_A HIV TAT specific factor 99.6 4.4E-14 1.5E-18 108.6 12.8 84 212-299 12-106 (112)
352 2bz2_A Negative elongation fac 99.6 1.4E-14 4.8E-19 113.0 9.2 77 109-193 36-112 (121)
353 3u1l_A PRE-mRNA-splicing facto 99.5 8.7E-15 3E-19 126.8 8.5 82 213-300 132-234 (240)
354 3pgw_A U1-A; protein-RNA compl 99.5 2.1E-14 7.2E-19 128.2 11.3 82 213-297 7-92 (282)
355 3v4m_A Splicing factor U2AF 65 99.5 3.8E-14 1.3E-18 107.6 9.1 81 214-294 4-96 (105)
356 1fje_B Nucleolin RBD12, protei 99.5 2.6E-14 8.8E-19 118.3 8.1 77 110-191 97-173 (175)
357 3ue2_A Poly(U)-binding-splicin 99.5 7.4E-14 2.5E-18 108.2 9.4 81 214-294 19-108 (118)
358 2adc_A Polypyrimidine tract-bi 99.5 5.5E-14 1.9E-18 121.8 9.3 79 213-296 32-111 (229)
359 1qm9_A Polypyrimidine tract-bi 99.5 5.3E-14 1.8E-18 118.9 8.0 78 215-297 3-81 (198)
360 1jmt_A Splicing factor U2AF 35 99.5 1.3E-14 4.5E-19 110.0 3.7 72 220-292 20-103 (104)
361 2dit_A HIV TAT specific factor 99.5 2.8E-13 9.5E-18 104.1 10.9 82 107-192 10-102 (112)
362 3u1l_A PRE-mRNA-splicing facto 99.5 6.5E-14 2.2E-18 121.3 8.2 79 109-193 131-230 (240)
363 1jmt_A Splicing factor U2AF 35 99.5 2.1E-14 7.3E-19 108.9 4.0 72 117-189 20-103 (104)
364 3v4m_A Splicing factor U2AF 65 99.5 1.2E-13 4E-18 104.9 7.8 81 110-190 3-95 (105)
365 3sde_A Paraspeckle component 1 99.5 3.1E-13 1.1E-17 119.4 11.6 77 213-295 20-96 (261)
366 3ue2_A Poly(U)-binding-splicin 99.4 2.3E-13 7.8E-18 105.4 8.4 81 110-190 18-107 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-12 4.6E-17 97.9 10.9 68 225-299 27-94 (100)
368 3s6e_A RNA-binding protein 39; 99.4 3.5E-12 1.2E-16 98.0 10.1 77 214-294 6-92 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-11 5.2E-16 92.1 11.5 75 112-193 10-91 (100)
370 3tht_A Alkylated DNA repair pr 99.3 5.2E-12 1.8E-16 115.1 8.5 76 212-293 15-97 (345)
371 3s6e_A RNA-binding protein 39; 99.2 2.1E-11 7E-16 93.7 8.6 77 110-190 5-91 (114)
372 3tht_A Alkylated DNA repair pr 99.2 1.9E-11 6.6E-16 111.3 8.8 78 107-190 13-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 1.8E-10 6.3E-15 83.3 8.5 74 213-295 5-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 3.4E-10 1.2E-14 87.2 7.9 75 212-292 15-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.0 1.2E-09 4.2E-14 79.0 8.3 76 109-193 4-87 (91)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.4E-09 4.9E-14 83.7 7.9 76 109-190 15-94 (121)
377 3dxb_A Thioredoxin N-terminall 98.9 1.8E-09 6.2E-14 92.7 7.8 68 227-294 141-212 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 1.7E-09 5.9E-14 78.6 5.8 74 212-294 12-94 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 4.1E-09 1.4E-13 90.5 8.1 68 123-190 140-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 4.6E-09 1.6E-13 76.4 5.4 74 108-190 11-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.5 4.5E-07 1.5E-11 67.2 8.9 73 213-291 19-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 9.7E-07 3.3E-11 65.4 9.3 72 110-187 19-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 2.7E-05 9.1E-10 57.3 9.4 89 110-228 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.8 0.00011 3.7E-09 54.3 8.6 75 214-294 4-83 (104)
385 1uw4_A UPF3X; nonsense mediate 97.6 0.00022 7.5E-09 51.7 7.2 68 113-180 2-71 (91)
386 1wey_A Calcipressin 1; structu 97.4 0.00085 2.9E-08 49.5 8.6 75 110-190 3-82 (104)
387 1uw4_A UPF3X; nonsense mediate 97.4 0.0014 5E-08 47.3 9.6 69 216-284 2-72 (91)
388 2dhx_A Poly (ADP-ribose) polym 97.2 0.0043 1.5E-07 45.5 10.3 76 214-298 7-87 (104)
389 1whv_A Poly(A)-specific ribonu 97.0 0.005 1.7E-07 44.6 8.8 55 215-278 16-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 96.9 0.0036 1.2E-07 47.4 7.9 73 214-294 23-96 (119)
391 1whv_A Poly(A)-specific ribonu 96.9 0.0041 1.4E-07 45.1 7.4 57 109-174 13-69 (100)
392 2l08_A Regulator of nonsense t 96.7 0.0011 3.7E-08 48.4 3.4 69 112-180 9-79 (97)
393 3p3d_A Nucleoporin 53; structu 96.7 0.0022 7.4E-08 49.3 5.2 78 215-294 7-98 (132)
394 1wwh_A Nucleoporin 35, nucleop 96.6 0.0064 2.2E-07 46.0 6.9 70 112-189 24-94 (119)
395 3ctr_A Poly(A)-specific ribonu 96.6 0.0019 6.6E-08 46.9 3.8 54 216-278 7-60 (101)
396 2l08_A Regulator of nonsense t 96.5 0.0072 2.5E-07 44.0 6.8 70 215-284 9-80 (97)
397 3ctr_A Poly(A)-specific ribonu 96.2 0.0058 2E-07 44.4 4.4 53 114-175 8-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 95.2 0.011 3.7E-07 55.6 3.5 57 111-173 52-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 94.6 0.022 7.5E-07 53.5 3.8 55 216-276 54-108 (464)
400 3p3d_A Nucleoporin 53; structu 93.6 0.073 2.5E-06 40.8 4.3 76 112-189 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 85.2 2.6 8.9E-05 40.1 8.2 55 215-278 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 82.2 3.5 0.00012 39.1 7.8 55 112-175 440-494 (507)
403 4eyt_A Telomerase associated p 59.8 42 0.0014 23.5 7.6 56 214-277 11-66 (129)
404 4e8u_A Putative uncharacterize 49.8 33 0.0011 27.3 5.7 56 114-172 14-81 (172)
405 2g0c_A ATP-dependent RNA helic 44.2 10 0.00035 25.4 1.8 59 226-293 12-75 (76)
406 2v94_A RPS24, 30S ribosomal pr 29.4 49 0.0017 24.1 3.4 48 122-170 37-89 (107)
407 4e8u_A Putative uncharacterize 28.8 1.2E+02 0.0041 24.0 5.9 55 217-274 14-80 (172)
408 1xn9_A 30S ribosomal protein S 26.9 42 0.0014 24.2 2.6 50 122-172 28-82 (101)
409 1ywx_A 30S ribosomal protein S 25.4 44 0.0015 24.1 2.5 47 122-169 28-79 (102)
410 3bbo_T Ribosomal protein L21; 24.8 15 0.00053 31.0 0.0 19 1-19 1-20 (257)
411 2g1d_A 30S ribosomal protein S 24.0 44 0.0015 23.9 2.3 48 122-170 29-81 (98)
412 3j21_T 50S ribosomal protein L 23.8 1.8E+02 0.0063 20.0 5.5 52 119-173 29-82 (86)
413 3fut_A Dimethyladenosine trans 21.1 73 0.0025 27.2 3.6 35 112-147 110-144 (271)
414 2xzm_P RPS24E; ribosome, trans 20.7 1E+02 0.0036 23.7 3.9 48 122-170 31-83 (149)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.6e-36 Score=260.57 Aligned_cols=171 Identities=29% Similarity=0.468 Sum_probs=153.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++|+++|+++|++||+|..|+|++|+.+|+++|||||+|.+.++|.+|++.+++..+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHH
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e 268 (323)
+....... .....+|||+|||+.+++++|+++|++||.|..++|+.+. +.++|||||+|.+.+
T Consensus 92 ~~~~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 92 SQRDPSLR---------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 154 (213)
T ss_dssp CCCCTHHH---------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHH
T ss_pred cccccccc---------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHH
Confidence 76332211 1234689999999999999999999999999999999885 457999999999999
Q ss_pred HHHHHHHHhCCcEeCCeeEEEEeecCCC
Q 020607 269 DLQSALDAMNGVEVEGRPLRLNMANERA 296 (323)
Q Consensus 269 ~A~~Al~~l~~~~i~g~~l~V~~a~~~~ 296 (323)
+|.+|++.|||..|+|++|+|.||+++.
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999999998753
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-36 Score=245.69 Aligned_cols=166 Identities=34% Similarity=0.636 Sum_probs=153.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~ 192 (323)
++|||+|||+++++++|+++|++||+|.+|+++.++ .++++|||||+|.+.++|.+|+..++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999998 6889999999999999999999999999999999999998644
Q ss_pred CCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHH
Q 020607 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (323)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~ 272 (323)
... ...+.++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|.+
T Consensus 80 ~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 80 QQS---------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp CCC---------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCC---------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 321 12346799999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHhCCcEeCCeeEEEEeecC
Q 020607 273 ALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 273 Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
|+..|||..++|++|+|.||+.
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999863
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.9e-35 Score=244.74 Aligned_cols=165 Identities=28% Similarity=0.485 Sum_probs=154.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+.++|||+|||+++++++|+++|+.||+|..|++++++.+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHH
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A 270 (323)
.... ....++|+|+|||+.+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|
T Consensus 82 ~~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 82 PGGE-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp CCSS-----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCcc-----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 4322 12457899999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhCCcEeCC--eeEEEEee
Q 020607 271 QSALDAMNGVEVEG--RPLRLNMA 292 (323)
Q Consensus 271 ~~Al~~l~~~~i~g--~~l~V~~a 292 (323)
.+|++.|||..+.| ++|+|.||
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999988 99999986
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.3e-35 Score=242.81 Aligned_cols=165 Identities=25% Similarity=0.510 Sum_probs=153.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+.++|||+|||+++++++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35789999999999999999999999999999999999899999999999999999999999999999999999999886
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHH
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A 270 (323)
.... ....++|+|+|||+.+++++|+++|++||.|..+++..+..+|.++|+|||+|.+.++|
T Consensus 81 ~~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 81 PSSA-----------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCCG-----------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCcc-----------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 4321 12357899999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhCCcEeCCee--EEEEee
Q 020607 271 QSALDAMNGVEVEGRP--LRLNMA 292 (323)
Q Consensus 271 ~~Al~~l~~~~i~g~~--l~V~~a 292 (323)
.+|++.|||..+.|+. |+|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999965 888886
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.6e-35 Score=250.23 Aligned_cols=180 Identities=27% Similarity=0.438 Sum_probs=153.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34567999999999999999999999999999999999998999999999999999999999985 99999999999999
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHH
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e 268 (323)
+......... ......++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.+
T Consensus 89 ~~~~~~~~~~-----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 89 AVSREDSQRP-----------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp CCC----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ccCccccccc-----------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 8644322111 11234589999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHhCCcEeCCeeEEEEeecCCCCCCCc
Q 020607 269 DLQSALDAMNGVEVEGRPLRLNMANERAPPVLP 301 (323)
Q Consensus 269 ~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~~~ 301 (323)
+|.+|+.. +|..|+|+.|.|.|+.++......
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC--------
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChhHhccc
Confidence 99999986 899999999999999988776433
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.4e-36 Score=257.39 Aligned_cols=185 Identities=26% Similarity=0.470 Sum_probs=159.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
.++|||+|||+++++++|+++|+.||.|..|+++++..+|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999988764
Q ss_pred CCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHH
Q 020607 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~ 271 (323)
......... .........++|||+|||+.+++++|+++|++||.|..+++..+..+|+++|||||+|.+.++|.
T Consensus 108 ~~~~~~~~~------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 108 IGQAQPIID------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CGGGHHHHH------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ccccchhhh------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 321110000 00011234579999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhCCcEeCCeeEEEEeecCCCCCCCcc
Q 020607 272 SALDAMNGVEVEGRPLRLNMANERAPPVLPA 302 (323)
Q Consensus 272 ~Al~~l~~~~i~g~~l~V~~a~~~~~~~~~~ 302 (323)
+|++.|||..|+|++|+|.|+..+..+...+
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~~~~~~p 212 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPPMPLLTP 212 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCSSTTSCC
T ss_pred HHHHHccCCEeCCcEEEEEEecCCCCCCCCC
Confidence 9999999999999999999999987765543
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.8e-35 Score=244.89 Aligned_cols=165 Identities=26% Similarity=0.530 Sum_probs=152.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+.++|||+|||+++++++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 45789999999999999999999999999999999998899999999999999999999998 4678999999998875
Q ss_pred CCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHH
Q 020607 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A 270 (323)
.... ....++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|
T Consensus 80 ~~~~-----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 80 PRDE-----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp CHHH-----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred chhh-----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 3211 12346899999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCcEeCCeeEEEEeecCC
Q 020607 271 QSALDAMNGVEVEGRPLRLNMANER 295 (323)
Q Consensus 271 ~~Al~~l~~~~i~g~~l~V~~a~~~ 295 (323)
.+|++ +||..++|++|+|.||.++
T Consensus 143 ~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 143 DRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99998 8999999999999999876
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7.3e-34 Score=236.65 Aligned_cols=166 Identities=23% Similarity=0.403 Sum_probs=148.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC--CceeEEEEEECCHHHHHHHHHHhCCcccC---CeEEE
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTVK 185 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~--~~~g~afv~F~~~~~a~~A~~~l~~~~~~---gr~i~ 185 (323)
+.++|||+|||+++++++|+++|++||+|..|+++++..+| +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45789999999999999999999999999999999999776 89999999999999999999999998876 67888
Q ss_pred EecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeC
Q 020607 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265 (323)
Q Consensus 186 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~ 265 (323)
+.++...... ....++|||+|||+.+++++|+++|++||.|..+.+..+. +|.++|||||+|.
T Consensus 82 ~~~~~~~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKNN----------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCCS----------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred Eccccccccc----------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEEC
Confidence 8776533221 1234789999999999999999999999999999999886 6899999999999
Q ss_pred CHHHHHHHHHHhCCcEeC---CeeEEEEeec
Q 020607 266 TAEDLQSALDAMNGVEVE---GRPLRLNMAN 293 (323)
Q Consensus 266 ~~e~A~~Al~~l~~~~i~---g~~l~V~~a~ 293 (323)
+.++|.+|++.|||..+. |++|+|.||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998776 4999999984
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.1e-33 Score=235.97 Aligned_cols=167 Identities=24% Similarity=0.444 Sum_probs=146.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|..||.+.. .++.+..+|+++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4556789999999999999999999999998776 344455579999999999999999999995 99999999999999
Q ss_pred cCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCH
Q 020607 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (323)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~ 267 (323)
++....... ....++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.
T Consensus 87 ~~~~~~~~~---------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 87 KPKGRDSKK---------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp CCCCSSCST---------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSH
T ss_pred cCCCccccc---------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCH
Confidence 987543211 2245799999999999999999999999977655 55789999999999999
Q ss_pred HHHHHHHHHhCCcEeCCeeEEEEeecCCC
Q 020607 268 EDLQSALDAMNGVEVEGRPLRLNMANERA 296 (323)
Q Consensus 268 e~A~~Al~~l~~~~i~g~~l~V~~a~~~~ 296 (323)
++|.+|++.|||..|+|++|+|+|+++++
T Consensus 147 ~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 147 ADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 99999999999999999999999998764
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.9e-32 Score=246.26 Aligned_cols=175 Identities=23% Similarity=0.352 Sum_probs=159.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.....+|||+|||+++++++|+++|+.||.|..++++.+..+|+++|||||+|.+.++|.+|+..++|..++|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCC-CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCH
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~ 267 (323)
+....... .....++|||+|||+.+ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.
T Consensus 172 a~~~~~~~--------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 172 TDAGQLTP--------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETA 236 (284)
T ss_dssp CCGGGCCT--------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSH
T ss_pred CCCCCCCc--------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCH
Confidence 87432211 12346789999999995 999999999999999999998887 799999999999999
Q ss_pred HHHHHHHHHhCCcEeCCeeEEEEeecCCCCC
Q 020607 268 EDLQSALDAMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 268 e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
++|.+|+..|||..++|++|+|.|+.++...
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred HHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 9999999999999999999999999887764
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.9e-32 Score=232.84 Aligned_cols=182 Identities=24% Similarity=0.423 Sum_probs=151.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-----------CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-----------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~ 178 (323)
...++|||+|||+++++++|+++|+.|| .|..+.+ ++++|||||+|.+.++|.+|+ .++|..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 3568999999999999999999999994 4444444 566899999999999999999 799999
Q ss_pred cCCeEEEEecCCCCCCCccccCCCCc---cCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCC
Q 020607 179 IGGRTVKVNFPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255 (323)
Q Consensus 179 ~~gr~i~V~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~ 255 (323)
+.|+.|.|.++............... ...........++|||+|||+.+++++|+++|++||.|..+++..+..+|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999998754332211110000 001112235678999999999999999999999999999999999988999
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCC
Q 020607 256 SRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 256 ~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
++|||||+|.+.++|.+|++.|||..|+|++|+|.|++++..+
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999999887654
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=9.7e-33 Score=229.45 Aligned_cols=159 Identities=26% Similarity=0.512 Sum_probs=143.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~ 179 (323)
+.++|||+|||+++++++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 66666664 45799999999999999999 7999999
Q ss_pred CCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccE
Q 020607 180 GGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259 (323)
Q Consensus 180 ~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~ 259 (323)
.|+.|.|.++..... ....++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|+
T Consensus 76 ~g~~i~v~~~~~~~~-----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP-----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TTEECEEECCSSCCC-----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred cCceeeecCCcccCC-----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 999999998753321 123578999999999999999999999999999999999889999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 260 GFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 260 afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
|||+|.+.++|.+|++.|||..++|++|.|+||.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999973
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.7e-32 Score=233.88 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=144.3
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLP-YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+..+|||+||| +.+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 356799999999 899999999999999999999998653 79999999999999999999999999999999999
Q ss_pred CCCCCCCcccc-----CCC--------Ccc-------CCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCc--cEEE
Q 020607 189 PEVPRGGERAA-----MGP--------KLQ-------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL--LSAK 246 (323)
Q Consensus 189 a~~~~~~~~~~-----~~~--------~~~-------~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v--~~i~ 246 (323)
+.......... ... ... ........+.++|||+|||+.+++++|+++|++||.| ..++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 86443211000 000 000 0001122456789999999999999999999999999 8888
Q ss_pred EeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe----eEEEEee
Q 020607 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR----PLRLNMA 292 (323)
Q Consensus 247 i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~----~l~V~~a 292 (323)
++.+. |.++|+|||+|.+.++|.+|+..|||..|.|+ ++.|+||
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88765 55679999999999999999999999999886 6777775
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.5e-32 Score=245.49 Aligned_cols=176 Identities=20% Similarity=0.310 Sum_probs=148.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
....++|||+|||+++++++|+++|..|| .|..|+++.+. .|.++|||||+|.+.++|.+|+..++|..+.|+.|.|.
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34678999999999999999999999999 99999999888 48899999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCC-CCHHHHHHHhccCCCccEEEEeeecC-CCCcccEEEEEeC
Q 020607 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERY-TGRSRGFGFVTFE 265 (323)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~i~i~~~~~-~g~~~g~afV~F~ 265 (323)
++......... .......++|||+|||+. +++++|+++|+.||.|..++++.+.. +|.++|||||+|.
T Consensus 193 ~a~~~~~~~~~----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 193 VSNPLEKSKRT----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp ECCCC-------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred ECCCCcccccc----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 98754433221 112345689999999999 99999999999999999999998875 5999999999999
Q ss_pred CHHHHHHHHHHhCCcEeCCeeEEEEeecCCC
Q 020607 266 TAEDLQSALDAMNGVEVEGRPLRLNMANERA 296 (323)
Q Consensus 266 ~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~ 296 (323)
+.++|.+|+ .|||..|+|++|.|.|+++++
T Consensus 263 ~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp SHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999999999 999999999999999999863
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.5e-31 Score=233.31 Aligned_cols=177 Identities=16% Similarity=0.264 Sum_probs=148.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 109 SDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 109 ~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
..+.++|||+|||+ ++++++|+++|+.||.|..|++++++ +|||||+|.+.++|.+|++.++|..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998775 7999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCC------------------CCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCC-CccEEEEe
Q 020607 188 FPEVPRGGERAAMG------------------PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVI 248 (323)
Q Consensus 188 ~a~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~i~i~ 248 (323)
++............ ............+.++|||+|||+.+++++|+++|++|| .|..++++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 98744211110000 000000111234568999999999999999999999999 99999987
Q ss_pred eecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC-CeeEEEEeecCC
Q 020607 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE-GRPLRLNMANER 295 (323)
Q Consensus 249 ~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~-g~~l~V~~a~~~ 295 (323)
.+ .+|+|||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 53 3789999999999999999999999999 999999999874
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.2e-31 Score=240.68 Aligned_cols=179 Identities=18% Similarity=0.315 Sum_probs=148.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~ 183 (323)
...+.++|||+|||+++++++|+ ++|..||.|..|++.+ +|+++|||||+|.+.++|.+|++.+||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34668899999999999999977 8999999999999875 6889999999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccCCCC------------------------------------------------------------
Q 020607 184 VKVNFPEVPRGGERAAMGPK------------------------------------------------------------ 203 (323)
Q Consensus 184 i~V~~a~~~~~~~~~~~~~~------------------------------------------------------------ 203 (323)
|+|.++..............
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999864332000000000
Q ss_pred -------------ccC---------------------CCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEee
Q 020607 204 -------------LQN---------------------SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF 249 (323)
Q Consensus 204 -------------~~~---------------------~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~ 249 (323)
... .......+.++|||+|||+.+++++|+++|++||.|..++++.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 000 0001223457899999999999999999999999999999985
Q ss_pred ecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC-CeeEEEEeecC
Q 020607 250 ERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE-GRPLRLNMANE 294 (323)
Q Consensus 250 ~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~-g~~l~V~~a~~ 294 (323)
+. +|||||+|.+.++|.+|++.|||..|. |++|+|+|++.
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 53 689999999999999999999999999 99999999873
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=1.2e-31 Score=228.32 Aligned_cols=174 Identities=16% Similarity=0.268 Sum_probs=146.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 112 AARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 112 ~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
.++|||+|||+ ++++++|+++|+.||.|..|++++++ +|||||+|.+.++|.+|+..++|..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998765 7899999999999999999999999999999999887
Q ss_pred CCCCCccccC------------------CCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCC-CccEEEEeeec
Q 020607 191 VPRGGERAAM------------------GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFER 251 (323)
Q Consensus 191 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~i~i~~~~ 251 (323)
.......... .............+.++|||+|||+.+++++|+++|++|| .|..++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 157 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC
Confidence 5422111000 0000001111234578999999999999999999999999 99999997542
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC-CeeEEEEeecCC
Q 020607 252 YTGRSRGFGFVTFETAEDLQSALDAMNGVEVE-GRPLRLNMANER 295 (323)
Q Consensus 252 ~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~-g~~l~V~~a~~~ 295 (323)
+|+|||+|.+.++|.+|+..|||..++ |++|+|.|++++
T Consensus 158 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 158 -----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 799999999999999999999999999 999999999864
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=1.4e-31 Score=240.55 Aligned_cols=159 Identities=20% Similarity=0.344 Sum_probs=148.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|+.|| |..+.+ ++++|||||+|.+.++|.+|+..++|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3568999999999999999999999999 888887 567899999999999999999999999999999999975
Q ss_pred CCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHH
Q 020607 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~ 269 (323)
. ..++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++
T Consensus 93 ~-----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 93 P-----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp C-----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred C-----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 3 33689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEeCCeeEEEEeecCCCCC
Q 020607 270 LQSALDAMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 270 A~~Al~~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
|.+|+..|||..++|++|.|.|+..+..+
T Consensus 150 a~~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 150 AARAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 99999999999999999999999876543
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.9e-31 Score=238.59 Aligned_cols=166 Identities=20% Similarity=0.319 Sum_probs=140.5
Q ss_pred ccccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 105 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
......+.++|||+|||+++++++|+++|+.||+|..|+++.+.. .++|||||+|.+.++|.+|++ ++|..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 334556788999999999999999999999999999999999873 357999999999999999996 89999999999
Q ss_pred EEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCC-CccEEEEeeecCCCCcccEEEEE
Q 020607 185 KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVT 263 (323)
Q Consensus 185 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~i~i~~~~~~g~~~g~afV~ 263 (323)
.|.++. .++|||+|||+.+++++|+++|+.|| .|..+.++.+.. |.++|||||+
T Consensus 111 ~v~~~~------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~ 165 (292)
T 2ghp_A 111 IVSHLT------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYID 165 (292)
T ss_dssp EEEECC------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEE
T ss_pred EEEECC------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEE
Confidence 998752 47899999999999999999999999 999999998874 8889999999
Q ss_pred eCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCC
Q 020607 264 FETAEDLQSALDAMNGVEVEGRPLRLNMANERAPP 298 (323)
Q Consensus 264 F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~ 298 (323)
|.+.++|.+|+..|||..+.|++|.|.|+.+....
T Consensus 166 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 166 VTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 99999999999999999999999999999876543
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.5e-30 Score=231.41 Aligned_cols=161 Identities=27% Similarity=0.410 Sum_probs=146.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++|+++|+++|+.||.|..|.+.++ +|||||+|.+.++|.+|+..++|..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 33455678999999999999999999999999999999644 699999999999999999999999999999999
Q ss_pred ecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCC
Q 020607 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266 (323)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~ 266 (323)
.++. +..+|||+|||+.+++++|+++|+.||.|..+.++.+ .+|+++|||||+|.+
T Consensus 91 ~~a~-----------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~ 146 (261)
T 3sde_A 91 RFAT-----------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAA 146 (261)
T ss_dssp EECC-----------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESS
T ss_pred eecc-----------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCC
Confidence 9875 2468999999999999999999999999999999999 489999999999999
Q ss_pred HHHHHHHHHHh-CCcEeC---CeeEEEEeecCCCC
Q 020607 267 AEDLQSALDAM-NGVEVE---GRPLRLNMANERAP 297 (323)
Q Consensus 267 ~e~A~~Al~~l-~~~~i~---g~~l~V~~a~~~~~ 297 (323)
.++|.+|+..| ++..+. |++|.|.++....+
T Consensus 147 ~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 147 KPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 99999999999 555555 99999999987544
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1.7e-24 Score=177.62 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=119.4
Q ss_pred EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEE
Q 020607 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220 (323)
Q Consensus 141 ~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 220 (323)
.+.++.+. .+++|||||+|.+.++|.+|++.+++....+....+........... ..............++|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE----GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC----CCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc----cccccccccCCCCCCEEEE
Confidence 45677776 47999999999999999999998876544444444432221100000 0001111122345689999
Q ss_pred ecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCCC
Q 020607 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPV 299 (323)
Q Consensus 221 ~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~ 299 (323)
+|||+.+++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|++.|||..|+|++|+|.|++++.++.
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999999999999999999999998899999999999999999999999999999999999999999876553
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.1e-23 Score=199.41 Aligned_cols=167 Identities=22% Similarity=0.327 Sum_probs=114.7
Q ss_pred ccCCCCCcCcCCCCCCCCCCCccCCCCCCcccccccccccccccccCCCCCcccCCCCCCCCccchhhh----hhh----
Q 020607 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEEE----EEE---- 96 (323)
Q Consensus 25 t~~~p~~l~~lf~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---- 96 (323)
|++|||||+.||+|.||++|++|++..|+.... .....++..|...+............+...+.... ...
T Consensus 2 t~~lPp~L~~lF~p~pPl~~~~P~~~~p~~~~~-~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~ 80 (437)
T 3pgw_S 2 TQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHH-NQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQ 80 (437)
T ss_pred CCcCCccHHHhcCCCCCCcCCCCcccccccccC-CCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998876643210 01111222222222221111111111100000000 000
Q ss_pred h------hhcccCcccccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHH
Q 020607 97 A------VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (323)
Q Consensus 97 ~------~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A 170 (323)
. .............+.++|||+|||+.+|+++|..+|..||.|..|.|+.+..+|+++|||||+|.+.++|.+|
T Consensus 81 ~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 160 (437)
T 3pgw_S 81 EVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160 (437)
T ss_pred HHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHH
Confidence 0 0001111223345668999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhCCcccCCeEEEEecCCCC
Q 020607 171 IRLFDGSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 171 ~~~l~~~~~~gr~i~V~~a~~~ 192 (323)
|..|||..|.|+.|.|.++...
T Consensus 161 i~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 161 YKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHcCCCEECCEEEEEEEeCCC
Confidence 9999999999999999998743
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=2.2e-22 Score=156.23 Aligned_cols=109 Identities=26% Similarity=0.421 Sum_probs=75.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
..+|||+|||+++++++|+++|++||.|..|+|+++. +.++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999986 56899999999999999999999999999999999999875
Q ss_pred CCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHH
Q 020607 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 231 (323)
........ ........+|||+|||+.+|++.
T Consensus 83 ~~~~~~~~---------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAEL---------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-------------------------------------
T ss_pred cccccccc---------ccccCCCCceEeCCCCCCccccc
Confidence 43222111 11122345799999999998863
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=2.2e-22 Score=163.70 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=114.8
Q ss_pred CCCceeEEEEEECCHHHHHHHHHHh-CCcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCC
Q 020607 150 TDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228 (323)
Q Consensus 150 ~~~~~g~afv~F~~~~~a~~A~~~l-~~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 228 (323)
....+|+++|+|.+.++|.+|++.+ +|..++| .+.++++.......... ...............++|||+|||+.++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-HHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-SSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-ccccccccccCCCCCCEEEEeCCCCCCC
Confidence 3567899999999999999999999 9999999 99999876322111100 0011111223345678999999999999
Q ss_pred HHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCC
Q 020607 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 296 (323)
Q Consensus 229 ~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~ 296 (323)
+++|+++|++||.|..++++.+ ++|||||+|.+.++|.+|+..|||..++|++|+|.|++++.
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999866 48999999999999999999999999999999999998764
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=145.96 Aligned_cols=81 Identities=27% Similarity=0.505 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
.+++|||+|||+.+|+++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 020607 294 E 294 (323)
Q Consensus 294 ~ 294 (323)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=143.33 Aligned_cols=81 Identities=32% Similarity=0.586 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++|||+|||+++|+++|+++|++||.|..|++++|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 020607 190 E 190 (323)
Q Consensus 190 ~ 190 (323)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 6
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=140.61 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=77.4
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCC-CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHh-CCcEeCCeeEEEEeec
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM-NGVEVEGRPLRLNMAN 293 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~l~V~~a~ 293 (323)
++|||+|||+.+|+++|+++|++|| .|..|++++++.+|.++|||||+|.+.++|.+|++.+ |+..++|++|+|+||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 7999999999999999999999999999999999987 5678999999999998
Q ss_pred CCCCC
Q 020607 294 ERAPP 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76554
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=139.30 Aligned_cols=81 Identities=19% Similarity=0.357 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCC--ccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc----EeCCeeE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPG--LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV----EVEGRPL 287 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~--v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~----~i~g~~l 287 (323)
.-.+|||+|||+.+|+++|+++|++||. +.+|++++|+.+|+++|||||+|.+.++|.+|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 679999999999999999999999999999999999996 5999999
Q ss_pred EEEeecC
Q 020607 288 RLNMANE 294 (323)
Q Consensus 288 ~V~~a~~ 294 (323)
.|+||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999986
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=8.4e-20 Score=140.40 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=79.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 020607 293 NERA 296 (323)
Q Consensus 293 ~~~~ 296 (323)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7654
No 30
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=4.4e-20 Score=152.45 Aligned_cols=142 Identities=14% Similarity=0.193 Sum_probs=81.2
Q ss_pred EEECCHHHHHHHHHHhCCcccC--CeEEEEecCCCCCCCccccC---CCCccCCCCCccCCCCeEEEecCCCCCCHHHHH
Q 020607 159 VTMGSVEEAKEAIRLFDGSQIG--GRTVKVNFPEVPRGGERAAM---GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233 (323)
Q Consensus 159 v~F~~~~~a~~A~~~l~~~~~~--gr~i~V~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~ 233 (323)
.+|.+.++|..|+..+++.... |+...+.............. .............+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999988887665 67766665332111110000 000011112223456789999999999999999
Q ss_pred HHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCCCC
Q 020607 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVL 300 (323)
Q Consensus 234 ~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~~ 300 (323)
++|++||.|..|.++.+..+|.++|||||+|.+.++|.+|+..|||..|.|++|.|.|+..+.....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998776543
No 31
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.9e-20 Score=149.45 Aligned_cols=127 Identities=27% Similarity=0.397 Sum_probs=83.8
Q ss_pred eEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHH
Q 020607 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234 (323)
Q Consensus 155 g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~ 234 (323)
-++|++|.+...+..|+..++|....|+.- +.+... .......++|||+|||+.+++++|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~-----------------~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP-----------------PPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -------------------------------CCSCCS-----------------CSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC-----------------CCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 367888899999999999888776666531 111111 11233457999999999999999999
Q ss_pred HhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCCC
Q 020607 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPV 299 (323)
Q Consensus 235 ~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~ 299 (323)
+|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|++++.++.
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999999999999998899999999999999999999999999999999999999999877654
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=138.69 Aligned_cols=82 Identities=17% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh-CCcccCCeEEEEecC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNFP 189 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l-~~~~~~gr~i~V~~a 189 (323)
.++|||+|||+++|+++|+++|++|| .|..|++++|+.+|+++|||||+|.+.++|.+|++.+ ++..++||+|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999876 456799999999998
Q ss_pred CCCC
Q 020607 190 EVPR 193 (323)
Q Consensus 190 ~~~~ 193 (323)
..+.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7543
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=139.92 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|++||.|..|+|++|+.+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 020607 190 EV 191 (323)
Q Consensus 190 ~~ 191 (323)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=133.22 Aligned_cols=84 Identities=30% Similarity=0.508 Sum_probs=77.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 020607 293 NERA 296 (323)
Q Consensus 293 ~~~~ 296 (323)
++++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8763
No 35
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2.9e-20 Score=137.79 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=73.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCC--CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G--~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
.+|||+|||+.+++++|+++|++|| .|..++++.++.+|+++|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 294 ERAPPV 299 (323)
Q Consensus 294 ~~~~~~ 299 (323)
+..++.
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 877664
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=4.7e-19 Score=137.28 Aligned_cols=91 Identities=27% Similarity=0.502 Sum_probs=84.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcc
Q 020607 292 ANERAPPVLPA 302 (323)
Q Consensus 292 a~~~~~~~~~~ 302 (323)
++.+..+....
T Consensus 92 a~~~~~~~~~~ 102 (115)
T 2dgo_A 92 ATRKPPAPKST 102 (115)
T ss_dssp SSCCCCCSCCC
T ss_pred ccCCCCCCccc
Confidence 99887764443
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.6e-19 Score=135.15 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=83.0
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 292 ANERAPPV 299 (323)
Q Consensus 292 a~~~~~~~ 299 (323)
++++....
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99877654
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=2.6e-19 Score=130.28 Aligned_cols=81 Identities=40% Similarity=0.785 Sum_probs=78.2
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~ 295 (323)
.+|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..++|++|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999876
Q ss_pred C
Q 020607 296 A 296 (323)
Q Consensus 296 ~ 296 (323)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=4.5e-19 Score=137.40 Aligned_cols=90 Identities=22% Similarity=0.361 Sum_probs=83.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 020607 292 ANERAPPVLP 301 (323)
Q Consensus 292 a~~~~~~~~~ 301 (323)
++++......
T Consensus 102 a~~~~~~~~~ 111 (115)
T 2cpz_A 102 KRSKNDSKSG 111 (115)
T ss_dssp CCCSCCCCCC
T ss_pred cCCCCcCCCC
Confidence 9988765443
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=135.01 Aligned_cols=89 Identities=30% Similarity=0.443 Sum_probs=83.2
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
++++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998766543
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=133.52 Aligned_cols=89 Identities=31% Similarity=0.552 Sum_probs=83.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCCCCc
Q 020607 293 NERAPPVLP 301 (323)
Q Consensus 293 ~~~~~~~~~ 301 (323)
+++......
T Consensus 83 ~~~~~~~~~ 91 (95)
T 2dnz_A 83 TERLDGGSG 91 (95)
T ss_dssp SCCCCCCCC
T ss_pred ccccCCCCC
Confidence 998776543
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=5e-20 Score=137.71 Aligned_cols=81 Identities=21% Similarity=0.458 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC--ceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCc----ccCCeE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT--VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS----QIGGRT 183 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~----~~~gr~ 183 (323)
..=.||||+|||+++|+++|+++|++||. |.+|++++|+.+|+++|||||+|.+.++|.+|++.+||. .++||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34468999999999999999999999995 779999999999999999999999999999999999987 589999
Q ss_pred EEEecCC
Q 020607 184 VKVNFPE 190 (323)
Q Consensus 184 i~V~~a~ 190 (323)
|.|++++
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999986
No 43
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=134.39 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=82.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020607 293 NERAPPVL 300 (323)
Q Consensus 293 ~~~~~~~~ 300 (323)
+++.....
T Consensus 86 ~~~~~~~~ 93 (99)
T 1whw_A 86 TIKKEASQ 93 (99)
T ss_dssp CCCSTTCC
T ss_pred CCCccccc
Confidence 99877543
No 44
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=2.8e-19 Score=130.72 Aligned_cols=81 Identities=33% Similarity=0.527 Sum_probs=77.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..+.|++|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q 020607 293 N 293 (323)
Q Consensus 293 ~ 293 (323)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=3.6e-19 Score=133.37 Aligned_cols=86 Identities=23% Similarity=0.453 Sum_probs=81.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
.++|||+|||+.+++++|+++|++||.|..+++..+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999998999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 020607 295 RAPPVL 300 (323)
Q Consensus 295 ~~~~~~ 300 (323)
+.....
T Consensus 82 ~~~~~~ 87 (96)
T 2x1f_A 82 SDISGV 87 (96)
T ss_dssp SSGGGH
T ss_pred CCCCCc
Confidence 776533
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=132.91 Aligned_cols=86 Identities=27% Similarity=0.462 Sum_probs=81.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEE-EEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i-~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
+.++|||+|||+.+++++|+++|++||.|..+ +++.+..+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 293 NERAPPV 299 (323)
Q Consensus 293 ~~~~~~~ 299 (323)
.++....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9877654
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6e-19 Score=131.76 Aligned_cols=83 Identities=28% Similarity=0.475 Sum_probs=79.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..+.|++|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecC
Q 020607 292 ANE 294 (323)
Q Consensus 292 a~~ 294 (323)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 48
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=136.00 Aligned_cols=87 Identities=33% Similarity=0.650 Sum_probs=82.1
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 211 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
...+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 020607 291 MANERAP 297 (323)
Q Consensus 291 ~a~~~~~ 297 (323)
+++++.+
T Consensus 102 ~a~~k~d 108 (108)
T 2jrs_A 102 HVTERTD 108 (108)
T ss_dssp CSCSSCC
T ss_pred EcccCCC
Confidence 9998753
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=133.51 Aligned_cols=88 Identities=24% Similarity=0.431 Sum_probs=81.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecC---CCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY---TGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~---~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
+.++|||+|||+.+++++|+++|++||.|..+.+..+.. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 468999999999999999999999999999999998876 56899999999999999999999999999999999999
Q ss_pred eecCCCCCCCc
Q 020607 291 MANERAPPVLP 301 (323)
Q Consensus 291 ~a~~~~~~~~~ 301 (323)
|++++..+...
T Consensus 84 ~a~~~~~~~~~ 94 (98)
T 2cpf_A 84 ISERATKPASG 94 (98)
T ss_dssp CSSCSSCCCCC
T ss_pred EccCCCCCCCC
Confidence 99988776544
No 50
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=132.75 Aligned_cols=87 Identities=24% Similarity=0.457 Sum_probs=81.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++ ||+..|.|++|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999899999999999999999999999 9999999999999999
Q ss_pred cCCCCCCC
Q 020607 293 NERAPPVL 300 (323)
Q Consensus 293 ~~~~~~~~ 300 (323)
+++.....
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98766543
No 51
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3.5e-19 Score=138.08 Aligned_cols=83 Identities=30% Similarity=0.508 Sum_probs=75.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
..+|||+|||+.+++++|+++|++||.|..++|+.+. +.++|||||+|.+.++|.+|++.|||..|.|++|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999885 45799999999999999999999999999999999999988
Q ss_pred CCCCC
Q 020607 295 RAPPV 299 (323)
Q Consensus 295 ~~~~~ 299 (323)
+....
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 66543
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=134.57 Aligned_cols=89 Identities=35% Similarity=0.569 Sum_probs=83.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
++++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 1x5s_A 89 AGKSSDNRS 97 (102)
T ss_dssp EECCCCCCC
T ss_pred CCCCCCCCC
Confidence 998776543
No 53
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.9e-19 Score=130.35 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=78.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ec
Q 020607 292 AN 293 (323)
Q Consensus 292 a~ 293 (323)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 54
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.9e-19 Score=134.73 Aligned_cols=90 Identities=26% Similarity=0.422 Sum_probs=83.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC------CcEeCCe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN------GVEVEGR 285 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~------~~~i~g~ 285 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEEeecCCCCCCCc
Q 020607 286 PLRLNMANERAPPVLP 301 (323)
Q Consensus 286 ~l~V~~a~~~~~~~~~ 301 (323)
+|+|.|+.++......
T Consensus 92 ~l~v~~a~~~~~~~~~ 107 (111)
T 1x4h_A 92 QLKVDLAVTRDEAASG 107 (111)
T ss_dssp EEEEECCCCCCCCCCC
T ss_pred EEEEEECCCCccCCCC
Confidence 9999999987765443
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=135.95 Aligned_cols=86 Identities=22% Similarity=0.448 Sum_probs=81.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
+++.++
T Consensus 101 ~~~~~~ 106 (106)
T 1p27_B 101 FVRGPP 106 (106)
T ss_dssp EESSCC
T ss_pred cCCCCC
Confidence 987654
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.4e-18 Score=134.60 Aligned_cols=89 Identities=27% Similarity=0.519 Sum_probs=82.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+.+++++|+++|..||.|..|++++++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCCc
Q 020607 188 FPEVPRGGE 196 (323)
Q Consensus 188 ~a~~~~~~~ 196 (323)
++.......
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998655443
No 57
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=1.3e-19 Score=134.16 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
.+|||+|||+++++++|+++|++|| .|..++++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 020607 191 VP 192 (323)
Q Consensus 191 ~~ 192 (323)
.+
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=130.23 Aligned_cols=82 Identities=30% Similarity=0.584 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CC
Q 020607 190 EV 191 (323)
Q Consensus 190 ~~ 191 (323)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=131.45 Aligned_cols=84 Identities=17% Similarity=0.430 Sum_probs=79.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+. +|+++|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020607 293 NERAP 297 (323)
Q Consensus 293 ~~~~~ 297 (323)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88764
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=4.6e-19 Score=129.59 Aligned_cols=82 Identities=32% Similarity=0.515 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|++||.|..|.++++..+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CC
Q 020607 189 PE 190 (323)
Q Consensus 189 a~ 190 (323)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 61
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=7.6e-19 Score=127.81 Aligned_cols=80 Identities=28% Similarity=0.575 Sum_probs=76.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~ 192 (323)
.+|||+|||+++++++|+++|++||.|..+.++++..+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.++...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999999999889999999999999999999999999999999999999998743
No 62
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=135.04 Aligned_cols=89 Identities=30% Similarity=0.411 Sum_probs=83.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
++.+.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2dnm_A 90 ARYGRRDLS 98 (103)
T ss_dssp CSSCCSCCC
T ss_pred CCcCCCCCC
Confidence 998766543
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=132.75 Aligned_cols=89 Identities=35% Similarity=0.526 Sum_probs=82.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346689999999999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcc
Q 020607 292 ANERAPPVLPA 302 (323)
Q Consensus 292 a~~~~~~~~~~ 302 (323)
++++..+...+
T Consensus 90 a~~~~~~~~~~ 100 (103)
T 2d9p_A 90 AQRKEERQSGP 100 (103)
T ss_dssp CSSCCCCCCCC
T ss_pred ecccccCCCCC
Confidence 99987765443
No 64
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.2e-19 Score=133.90 Aligned_cols=88 Identities=25% Similarity=0.468 Sum_probs=82.7
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 292 ANERAPPV 299 (323)
Q Consensus 292 a~~~~~~~ 299 (323)
++++....
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 98876653
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=6e-19 Score=132.19 Aligned_cols=83 Identities=25% Similarity=0.598 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+.++|||+|||+++++++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++.|+|..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 020607 191 VPR 193 (323)
Q Consensus 191 ~~~ 193 (323)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 66
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.4e-19 Score=133.68 Aligned_cols=89 Identities=27% Similarity=0.413 Sum_probs=83.0
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeee-cCCCCcccEEEEEeCCHHHHHHHHHHh-CCcEeCCeeEEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE-RYTGRSRGFGFVTFETAEDLQSALDAM-NGVEVEGRPLRL 289 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~-~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~l~V 289 (323)
....++|||+|||+.+++++|+++|++||.|..+.++.+ ..+|.++|||||+|.+.++|.+|++.| ||..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446689999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred EeecCCCCCCC
Q 020607 290 NMANERAPPVL 300 (323)
Q Consensus 290 ~~a~~~~~~~~ 300 (323)
.|++++.....
T Consensus 92 ~~a~~~~~~~~ 102 (107)
T 2cph_A 92 EWADSEVTVQS 102 (107)
T ss_dssp EECCCCCCCCC
T ss_pred EeCCCCCCCCC
Confidence 99998876543
No 67
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.4e-19 Score=131.81 Aligned_cols=86 Identities=29% Similarity=0.471 Sum_probs=80.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|..||.|..|+++.++.+++++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45677999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 986544
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=130.56 Aligned_cols=85 Identities=28% Similarity=0.544 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020607 190 EVPRG 194 (323)
Q Consensus 190 ~~~~~ 194 (323)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 75544
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.4e-18 Score=131.93 Aligned_cols=87 Identities=24% Similarity=0.497 Sum_probs=80.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++|| |..+.++.+..+|+++|||||+|.+.++|.+|+ .|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44568999999999999999999999996 999999999999999999999999999999999 8999999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
++++.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2dng_A 90 AEGRKQDKS 98 (103)
T ss_dssp CCCCCCCCS
T ss_pred ecCCCCCCC
Confidence 998766543
No 70
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=131.86 Aligned_cols=82 Identities=23% Similarity=0.424 Sum_probs=78.2
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccE--------EEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~--------i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~ 283 (323)
....++|||+|||+.+++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456689999999999999999999999999999 999999989999999999999999999999999999999
Q ss_pred CeeEEEEeec
Q 020607 284 GRPLRLNMAN 293 (323)
Q Consensus 284 g~~l~V~~a~ 293 (323)
|++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1.4e-18 Score=134.61 Aligned_cols=85 Identities=32% Similarity=0.507 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|..||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020607 190 EVPRG 194 (323)
Q Consensus 190 ~~~~~ 194 (323)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 75544
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=133.98 Aligned_cols=88 Identities=20% Similarity=0.366 Sum_probs=82.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCcc--------EEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL--------SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~--------~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~ 283 (323)
....++|||+|||+.+++++|+++|++||.|. .++++.+..+|+++|||||+|.+.++|.+|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeeEEEEeecCCCCCC
Q 020607 284 GRPLRLNMANERAPPV 299 (323)
Q Consensus 284 g~~l~V~~a~~~~~~~ 299 (323)
|++|+|.|++.+....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999877654
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=132.30 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=81.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCcc-EEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCee----E
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP----L 287 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~-~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~----l 287 (323)
...++|||+|||+.+++++|+++|++||.|. .++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEeecCCCCC
Q 020607 288 RLNMANERAPP 298 (323)
Q Consensus 288 ~V~~a~~~~~~ 298 (323)
+|.|+++...+
T Consensus 87 ~v~~a~~~~~~ 97 (99)
T 2div_A 87 KLNYATYSGPS 97 (99)
T ss_dssp CEEETTCCSSS
T ss_pred EEeecCCCCCC
Confidence 99999887654
No 74
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.4e-19 Score=133.42 Aligned_cols=87 Identities=24% Similarity=0.393 Sum_probs=81.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9875543
No 75
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.5e-19 Score=131.52 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=79.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCCC
Q 020607 293 NERA 296 (323)
Q Consensus 293 ~~~~ 296 (323)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8653
No 76
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=130.27 Aligned_cols=84 Identities=39% Similarity=0.579 Sum_probs=79.3
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456678999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCC
Q 020607 187 NFPE 190 (323)
Q Consensus 187 ~~a~ 190 (323)
.+++
T Consensus 90 ~~a~ 93 (95)
T 2cqc_A 90 SGPS 93 (95)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9986
No 77
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=130.50 Aligned_cols=85 Identities=27% Similarity=0.475 Sum_probs=79.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|+++.+. +|+++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 188 FPEVPR 193 (323)
Q Consensus 188 ~a~~~~ 193 (323)
++..+.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987543
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=130.70 Aligned_cols=85 Identities=28% Similarity=0.499 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCC---CCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV---TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
.+.++|||+|||+++++++|+++|++||.|..|+++.+.. +++++|||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999886 6699999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 187 NFPEVPRG 194 (323)
Q Consensus 187 ~~a~~~~~ 194 (323)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99875543
No 79
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.9e-18 Score=131.49 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=80.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC---eeEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG---RPLRL 289 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g---~~l~V 289 (323)
...++|||+|||+.+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999988 79999999999999999999999999999998 99999
Q ss_pred EeecCCCCCC
Q 020607 290 NMANERAPPV 299 (323)
Q Consensus 290 ~~a~~~~~~~ 299 (323)
.|++.+....
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999877653
No 80
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=130.90 Aligned_cols=86 Identities=27% Similarity=0.533 Sum_probs=80.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|+++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998 89999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9885544
No 81
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=9.6e-19 Score=134.39 Aligned_cols=86 Identities=19% Similarity=0.369 Sum_probs=81.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|++|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
+++.++
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 887654
No 82
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.7e-19 Score=130.91 Aligned_cols=85 Identities=21% Similarity=0.454 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEE-EEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.+.++|||+|||+++++++|+++|++||.|..+ ++++++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 875543
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=133.27 Aligned_cols=84 Identities=25% Similarity=0.380 Sum_probs=79.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456789999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCC
Q 020607 188 FPEV 191 (323)
Q Consensus 188 ~a~~ 191 (323)
++..
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 9864
No 84
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.6e-19 Score=132.75 Aligned_cols=88 Identities=31% Similarity=0.459 Sum_probs=81.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|+++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020607 188 FPEVPRGG 195 (323)
Q Consensus 188 ~a~~~~~~ 195 (323)
++......
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 98865443
No 85
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=132.05 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=81.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC------CcccCC
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD------GSQIGG 181 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~------~~~~~g 181 (323)
...+.++|||+|||+++++++|+++|..||.|..|++++++.+|+++|||||+|.+.++|.+|+..++ +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred eEEEEecCCCCCC
Q 020607 182 RTVKVNFPEVPRG 194 (323)
Q Consensus 182 r~i~V~~a~~~~~ 194 (323)
+.|.|.++.....
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999875543
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=130.55 Aligned_cols=84 Identities=27% Similarity=0.472 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~ 178 (323)
....+.++|||+|||+++++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44567789999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred cCCeEEEEecCC
Q 020607 179 IGGRTVKVNFPE 190 (323)
Q Consensus 179 ~~gr~i~V~~a~ 190 (323)
+.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999863
No 87
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=131.93 Aligned_cols=88 Identities=32% Similarity=0.520 Sum_probs=81.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 187 NFPEVPRG 194 (323)
Q Consensus 187 ~~a~~~~~ 194 (323)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99875543
No 88
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.7e-18 Score=134.77 Aligned_cols=82 Identities=28% Similarity=0.456 Sum_probs=77.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|++.|||..|+|++|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 020607 292 AN 293 (323)
Q Consensus 292 a~ 293 (323)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 89
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=131.99 Aligned_cols=87 Identities=33% Similarity=0.678 Sum_probs=81.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|+++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9875443
No 90
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=133.25 Aligned_cols=85 Identities=29% Similarity=0.575 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|++||.|..|.++.+. +|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4566899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
+.....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 985544
No 91
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=128.14 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=78.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCC-cccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR-SRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~-~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
..++|||+|||+.+++++|+++|++||.|..+.+..+..++. ++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999999887766 8999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020607 293 NERAP 297 (323)
Q Consensus 293 ~~~~~ 297 (323)
.+..+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 92
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.3e-19 Score=132.85 Aligned_cols=87 Identities=31% Similarity=0.483 Sum_probs=81.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9975443
No 93
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=133.89 Aligned_cols=85 Identities=29% Similarity=0.535 Sum_probs=80.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
+.+...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 886654
No 94
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=129.67 Aligned_cols=83 Identities=28% Similarity=0.516 Sum_probs=78.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCC
Q 020607 188 FPE 190 (323)
Q Consensus 188 ~a~ 190 (323)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 95
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=132.75 Aligned_cols=85 Identities=34% Similarity=0.609 Sum_probs=79.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+.+++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.++|..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556799999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020607 188 FPEVP 192 (323)
Q Consensus 188 ~a~~~ 192 (323)
++..+
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98743
No 96
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-18 Score=128.19 Aligned_cols=88 Identities=31% Similarity=0.536 Sum_probs=80.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.++.+.. .++|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44668999999999999999999999999999999998763 3899999999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 020607 292 ANERAPPVLP 301 (323)
Q Consensus 292 a~~~~~~~~~ 301 (323)
++++......
T Consensus 90 a~~~~~~~~~ 99 (103)
T 2cq3_A 90 ATARVMTNSG 99 (103)
T ss_dssp CCSSCCCCCS
T ss_pred cccCCCCCCC
Confidence 9998765443
No 97
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=130.65 Aligned_cols=85 Identities=25% Similarity=0.509 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCC-CCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~-g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
.+.++|||+|||+.+++++|+++|+.|| |..+.++.+..+ |+++|||||+|.+.++|.+|+ .|||..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred ecCCCCCC
Q 020607 292 ANERAPPV 299 (323)
Q Consensus 292 a~~~~~~~ 299 (323)
++++....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99876653
No 98
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=2e-19 Score=135.88 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=77.8
Q ss_pred CCeEEEecCCC------CCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC-eeE
Q 020607 215 PHKIYAGNLGW------GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG-RPL 287 (323)
Q Consensus 215 ~~~l~V~nlp~------~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g-~~l 287 (323)
.++|||+|||+ .+++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|++.|||..+.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020607 288 RLNMANER 295 (323)
Q Consensus 288 ~V~~a~~~ 295 (323)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=132.10 Aligned_cols=100 Identities=26% Similarity=0.397 Sum_probs=83.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~ 192 (323)
++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6899999999999999999999999999999999999865
Q ss_pred CCCccccCCCCccCCCCCccCCCCeEEEecCC
Q 020607 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLG 224 (323)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp 224 (323)
.......... .......+|||+||+
T Consensus 76 ~~~~~~~~~~-------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPP-------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCC-------CSCCCCSCCCSCCCC
T ss_pred CCcccCCCCC-------ccccCCCceecCCCC
Confidence 5332222111 112345789999997
No 100
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.5e-18 Score=132.39 Aligned_cols=88 Identities=20% Similarity=0.368 Sum_probs=82.0
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe---CCeeEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV---EGRPLR 288 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i---~g~~l~ 288 (323)
..+.++|||+|||+.+++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|++.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999998 899999
Q ss_pred EEeecCCCCCC
Q 020607 289 LNMANERAPPV 299 (323)
Q Consensus 289 V~~a~~~~~~~ 299 (323)
|.|++.+....
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998876543
No 101
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=129.23 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=77.3
Q ss_pred CCCCeEEEecCCCCCCHHHHH----HHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~----~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
...++|||+|||+.+++++|+ ++|++||.|..++++.+..+ +|||||+|.+.++|.+|++.|||..+.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999988754 88999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 020607 289 LNMANERAPP 298 (323)
Q Consensus 289 V~~a~~~~~~ 298 (323)
|++++++..+
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999887765
No 102
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.3e-18 Score=126.52 Aligned_cols=81 Identities=25% Similarity=0.527 Sum_probs=75.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999997 58889999999998
Q ss_pred cC
Q 020607 188 FP 189 (323)
Q Consensus 188 ~a 189 (323)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 103
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=3.6e-19 Score=134.52 Aligned_cols=80 Identities=26% Similarity=0.458 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC-eE
Q 020607 111 EAARLYVGNLPY------SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-RT 183 (323)
Q Consensus 111 ~~~~lfV~nLp~------~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g-r~ 183 (323)
..++|||+|||+ ++++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEecCC
Q 020607 184 VKVNFPE 190 (323)
Q Consensus 184 i~V~~a~ 190 (323)
|+|.++.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9999875
No 104
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.2e-18 Score=137.75 Aligned_cols=86 Identities=28% Similarity=0.508 Sum_probs=81.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 020607 292 ANERAP 297 (323)
Q Consensus 292 a~~~~~ 297 (323)
++++.+
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 988654
No 105
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.7e-18 Score=127.63 Aligned_cols=81 Identities=22% Similarity=0.572 Sum_probs=77.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
.++|||+|||+.+++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|+ .|||..+.|++|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 8999999999999999987
Q ss_pred CC
Q 020607 295 RA 296 (323)
Q Consensus 295 ~~ 296 (323)
+.
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 106
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.3e-18 Score=133.61 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=80.0
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|+|..++|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 33456679999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 020607 187 NFPEVP 192 (323)
Q Consensus 187 ~~a~~~ 192 (323)
.++...
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 998643
No 107
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-18 Score=130.73 Aligned_cols=87 Identities=21% Similarity=0.448 Sum_probs=80.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeec-CCCCCceeEEEEEECCHHHHHHHHHHh-CCcccCCeEEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD-RVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVK 185 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afv~F~~~~~a~~A~~~l-~~~~~~gr~i~ 185 (323)
...+.++|||+|||+.+++++|+++|..||.|..|+++.+ +.+++++|||||+|.+.++|.+|+..| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999999 788999999999999999999999999 99999999999
Q ss_pred EecCCCCCC
Q 020607 186 VNFPEVPRG 194 (323)
Q Consensus 186 V~~a~~~~~ 194 (323)
|.++.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999986544
No 108
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=2.5e-18 Score=126.78 Aligned_cols=80 Identities=28% Similarity=0.532 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
.++|||+|||+++++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|+ .+||..+.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999889999999999999999999999 8999999999999999874
Q ss_pred C
Q 020607 192 P 192 (323)
Q Consensus 192 ~ 192 (323)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 109
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=4e-18 Score=129.75 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC---eEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG---RTVK 185 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g---r~i~ 185 (323)
..+.++|||+|||+++++++|+++|..||.|..|+|+.+. +|+++|||||+|.+.++|.+|++.||+..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999999999999998 9999
Q ss_pred EecCCCCCC
Q 020607 186 VNFPEVPRG 194 (323)
Q Consensus 186 V~~a~~~~~ 194 (323)
|.++.....
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999986544
No 110
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=2.2e-18 Score=131.39 Aligned_cols=87 Identities=22% Similarity=0.397 Sum_probs=80.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc---CCeEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI---GGRTV 184 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~---~gr~i 184 (323)
...+.++|||+|||+++++++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++.||+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345667899999999999999999999999999999999998999999999999999999999999999988 89999
Q ss_pred EEecCCCCCC
Q 020607 185 KVNFPEVPRG 194 (323)
Q Consensus 185 ~V~~a~~~~~ 194 (323)
.|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999986544
No 111
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.9e-18 Score=128.39 Aligned_cols=86 Identities=28% Similarity=0.390 Sum_probs=78.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.++.+.. .++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34568999999999999999999999999999999998853 3689999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 292 ANERAPPV 299 (323)
Q Consensus 292 a~~~~~~~ 299 (323)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99876553
No 112
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=131.65 Aligned_cols=88 Identities=28% Similarity=0.503 Sum_probs=81.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhcc-CCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcE-eCCeeEEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVE-VEGRPLRLN 290 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~-~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~-i~g~~l~V~ 290 (323)
.+.++|||+|||+.+++++|+++|++ ||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||.. +.|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred eecCCCCCCCc
Q 020607 291 MANERAPPVLP 301 (323)
Q Consensus 291 ~a~~~~~~~~~ 301 (323)
|+.++......
T Consensus 86 ~a~~~~~~~~~ 96 (104)
T 2dhg_A 86 VAIPKASRVKP 96 (104)
T ss_dssp BCCCCCSCCCC
T ss_pred EccCCCcCCCC
Confidence 99887665443
No 113
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=132.08 Aligned_cols=89 Identities=34% Similarity=0.466 Sum_probs=82.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|++.+|+ .|.|++|+|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999998 89999999999
Q ss_pred ecCCCCCCCc
Q 020607 292 ANERAPPVLP 301 (323)
Q Consensus 292 a~~~~~~~~~ 301 (323)
+.....+...
T Consensus 93 a~~~~~~~~~ 102 (116)
T 2cqd_A 93 AYLGAKPRSL 102 (116)
T ss_dssp STTTCCCCCC
T ss_pred cccCCCcccc
Confidence 9886665443
No 114
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=129.11 Aligned_cols=86 Identities=24% Similarity=0.446 Sum_probs=79.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.+. +|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999887 699999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 020607 292 ANERAPP 298 (323)
Q Consensus 292 a~~~~~~ 298 (323)
++...+.
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865444
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=124.97 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=77.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|+.| .|..++++.+ .+|+++|||||+|.+.++|.+|++ |||..|+|++|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 456899999999999999999999999 9999999999 689999999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 020607 293 NERAP 297 (323)
Q Consensus 293 ~~~~~ 297 (323)
.+++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 88754
No 116
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=129.49 Aligned_cols=84 Identities=27% Similarity=0.498 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce-EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeE----
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA-SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT---- 183 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~---- 183 (323)
..+.++|||+|||+++++++|+++|.+||.|. .|++++++.+|+++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 020607 184 VKVNFPEVP 192 (323)
Q Consensus 184 i~V~~a~~~ 192 (323)
|+|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998744
No 117
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=128.79 Aligned_cols=86 Identities=26% Similarity=0.438 Sum_probs=80.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc-cCCeEEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGGRTVK 185 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~-~~gr~i~ 185 (323)
...+.++|||+|||+++++++|+++|.. ||.|..|+++.+. +|+++|||||+|.+.++|.+|++.|++.. ++|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999999 99999999999999999999999999999 9999999
Q ss_pred EecCCCCCC
Q 020607 186 VNFPEVPRG 194 (323)
Q Consensus 186 V~~a~~~~~ 194 (323)
|.++.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999875443
No 118
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=2.1e-18 Score=136.43 Aligned_cols=86 Identities=38% Similarity=0.576 Sum_probs=80.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 020607 187 NFPEVP 192 (323)
Q Consensus 187 ~~a~~~ 192 (323)
.++..+
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998754
No 119
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=2.6e-18 Score=127.49 Aligned_cols=85 Identities=29% Similarity=0.518 Sum_probs=79.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+++|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999873 7899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 293 NERAPPV 299 (323)
Q Consensus 293 ~~~~~~~ 299 (323)
+++..+.
T Consensus 84 ~~~~~~~ 90 (92)
T 2dgv_A 84 RNASGPS 90 (92)
T ss_dssp SCCSSCC
T ss_pred CCCCCCC
Confidence 9877653
No 120
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=137.54 Aligned_cols=89 Identities=20% Similarity=0.317 Sum_probs=81.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccE--EEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc----EeCCe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV----EVEGR 285 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~--i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~----~i~g~ 285 (323)
....++|||+|||+.+++++|+++|++||.|.. |+++.++.+|+++|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999966 99999999999999999999999 999999999999 99999
Q ss_pred eEEEEeecCCCCCCCc
Q 020607 286 PLRLNMANERAPPVLP 301 (323)
Q Consensus 286 ~l~V~~a~~~~~~~~~ 301 (323)
+|+|.|++++......
T Consensus 99 ~l~V~~a~~~~~~~~~ 114 (131)
T 2m2b_A 99 TINVEFAKGSKRDMAS 114 (131)
T ss_dssp CCCCEECCCSCCCCCC
T ss_pred EEEEEECCCCCCCCCC
Confidence 9999999887554433
No 121
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=1.6e-18 Score=129.53 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=76.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 020607 293 NE 294 (323)
Q Consensus 293 ~~ 294 (323)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 122
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=131.97 Aligned_cols=87 Identities=28% Similarity=0.429 Sum_probs=80.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--------SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~ 179 (323)
...+.++|||+|||+++++++|+++|.+||.|. .|+++.++.+|+++|||||+|.+.++|.+|++.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCC
Q 020607 180 GGRTVKVNFPEVPRG 194 (323)
Q Consensus 180 ~gr~i~V~~a~~~~~ 194 (323)
.|+.|+|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999875544
No 123
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.1e-18 Score=129.32 Aligned_cols=85 Identities=29% Similarity=0.629 Sum_probs=78.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+|| |..|++++++.+|+++|||||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999999999999999999999999999999 799999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9875543
No 124
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=139.75 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..++|||+|||+++++++|+++|..|| .|..|+++.|+.+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 020607 189 PE 190 (323)
Q Consensus 189 a~ 190 (323)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 125
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=128.99 Aligned_cols=85 Identities=29% Similarity=0.508 Sum_probs=79.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|.++.+ +|+++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9875543
No 126
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=127.60 Aligned_cols=81 Identities=31% Similarity=0.537 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+.+++++|+++|++||.|..|+++.+.. |+++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34557999999999999999999999999999999999984 99999999999999999999999999999999999998
Q ss_pred CC
Q 020607 189 PE 190 (323)
Q Consensus 189 a~ 190 (323)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 127
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=126.81 Aligned_cols=88 Identities=25% Similarity=0.363 Sum_probs=81.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+|+. ++..|.|++|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456899999999999999999999999999999999999899999999999999999999998 58899999999999
Q ss_pred ecCCCCCCCc
Q 020607 292 ANERAPPVLP 301 (323)
Q Consensus 292 a~~~~~~~~~ 301 (323)
+.++..+..+
T Consensus 90 a~~~~~~~~~ 99 (103)
T 2cqg_A 90 PNSKQSQDSG 99 (103)
T ss_dssp CCTTCCCCCS
T ss_pred cCCCCcCCCC
Confidence 9998776443
No 128
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=128.17 Aligned_cols=81 Identities=25% Similarity=0.503 Sum_probs=76.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|++||.|..+.+..+.. |+++|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4558999999999999999999999999999999999885 899999999999999999999999999999999999998
Q ss_pred cC
Q 020607 293 NE 294 (323)
Q Consensus 293 ~~ 294 (323)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 129
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=130.75 Aligned_cols=88 Identities=25% Similarity=0.465 Sum_probs=82.2
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+.. |+..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44668999999999999999999999999999999999998999999999999999999999998 99999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (105)
T 2dh8_A 92 CTPRGMQPS 100 (105)
T ss_dssp SCCSSCCTT
T ss_pred ccCCCCCCC
Confidence 998776543
No 130
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=5.8e-19 Score=136.73 Aligned_cols=105 Identities=19% Similarity=0.308 Sum_probs=92.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|+.||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999865 56689999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCCC
Q 020607 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241 (323)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~ 241 (323)
+...... ++++...++++|.++|++||.
T Consensus 82 a~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF-------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT-------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh-------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8632111 466777899999999999985
No 131
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=126.38 Aligned_cols=82 Identities=23% Similarity=0.529 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCC-ceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR-SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~-~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
..++|||+|||+++++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999999987766 8999999999999999999999999999999999988
Q ss_pred CCC
Q 020607 190 EVP 192 (323)
Q Consensus 190 ~~~ 192 (323)
..+
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 132
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=5.4e-18 Score=124.50 Aligned_cols=79 Identities=29% Similarity=0.612 Sum_probs=74.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++ +++..+.|++|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 456899999999999999999999999999999999999899999999999999999999997 5889999999999986
No 133
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=9e-18 Score=134.44 Aligned_cols=86 Identities=31% Similarity=0.480 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|+.||.|..|+++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
+.....
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 875543
No 134
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=5.1e-18 Score=129.60 Aligned_cols=82 Identities=30% Similarity=0.560 Sum_probs=77.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+. +|+++|||||+|.+.++|.+|++.|||..|.|++|+|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecC
Q 020607 292 ANE 294 (323)
Q Consensus 292 a~~ 294 (323)
+..
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 135
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=130.78 Aligned_cols=85 Identities=29% Similarity=0.595 Sum_probs=80.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34789999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020607 294 ERAPP 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
++...
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76654
No 136
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=1.1e-19 Score=172.04 Aligned_cols=86 Identities=20% Similarity=0.504 Sum_probs=81.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
..+...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 976553
No 137
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=5.1e-18 Score=130.23 Aligned_cols=86 Identities=30% Similarity=0.477 Sum_probs=77.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|.+|++.+ |..++|++|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345689999999999999999999999999999999999989999999999999999999999975 5999999999999
Q ss_pred ecCCCCC
Q 020607 292 ANERAPP 298 (323)
Q Consensus 292 a~~~~~~ 298 (323)
+.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 138
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.6e-18 Score=123.69 Aligned_cols=75 Identities=28% Similarity=0.527 Sum_probs=72.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
+|||+|||+++++++|+++|++||+|..|+++.++.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 8999999999999875
No 139
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=129.38 Aligned_cols=86 Identities=28% Similarity=0.452 Sum_probs=80.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|+++.++.+++++|||||+|.+.++|.+|+.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999998 9999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9875543
No 140
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=139.40 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCC--CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G--~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..++|||+|||+.+++++|+++|+.|| .|..++++.+..+|+++|||||+|.+.++|.+|++.|||..|+|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 020607 292 ANER 295 (323)
Q Consensus 292 a~~~ 295 (323)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 141
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=9.2e-18 Score=131.76 Aligned_cols=89 Identities=27% Similarity=0.468 Sum_probs=82.4
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.+..+. +|+++|||||+|.+.++|.+|++.|||..+.|++|+|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3566899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 020607 292 ANERAPPVLP 301 (323)
Q Consensus 292 a~~~~~~~~~ 301 (323)
|.....+...
T Consensus 111 a~~~~~~~~~ 120 (124)
T 2kt5_A 111 VASQIDLEHH 120 (124)
T ss_dssp ECCTTCCCCC
T ss_pred eCCCCCCCCC
Confidence 9887665433
No 142
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9e-18 Score=130.22 Aligned_cols=85 Identities=34% Similarity=0.560 Sum_probs=79.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|.+|++.+++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999998 8999999999
Q ss_pred cCCCCC
Q 020607 188 FPEVPR 193 (323)
Q Consensus 188 ~a~~~~ 193 (323)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 987543
No 143
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=8.8e-18 Score=134.49 Aligned_cols=88 Identities=24% Similarity=0.411 Sum_probs=82.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 292 ANERAPPV 299 (323)
Q Consensus 292 a~~~~~~~ 299 (323)
++.+....
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876653
No 144
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=129.47 Aligned_cols=85 Identities=19% Similarity=0.499 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCC-CCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
..+.++|||+|||+++++++|+++|..|| |..|+|+.++.+ |+++|||||+|.+.++|.+|+ .+++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999987 999999999999999999999 899999999999999
Q ss_pred cCCCCCCC
Q 020607 188 FPEVPRGG 195 (323)
Q Consensus 188 ~a~~~~~~ 195 (323)
++......
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99865443
No 145
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=128.30 Aligned_cols=85 Identities=35% Similarity=0.521 Sum_probs=78.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|+|+.++ +|+++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 188 FPEVPR 193 (323)
Q Consensus 188 ~a~~~~ 193 (323)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987543
No 146
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=126.28 Aligned_cols=85 Identities=26% Similarity=0.491 Sum_probs=77.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.|..|+++++. +.++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 44567899999999999999999999999999999999986 3478999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9986443
No 147
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=126.35 Aligned_cols=85 Identities=29% Similarity=0.539 Sum_probs=76.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.| +++.+ .+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4467899999999999999999999999976 55555 5889999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
++++..+..
T Consensus 88 a~~~~~~~~ 96 (101)
T 2fc9_A 88 QGPRGSPNS 96 (101)
T ss_dssp CSSCCCCCC
T ss_pred cCCCCCCCC
Confidence 998866543
No 148
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.6e-18 Score=123.70 Aligned_cols=75 Identities=28% Similarity=0.495 Sum_probs=72.5
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 217 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++ +||..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 9999999999999986
No 149
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=5.2e-19 Score=130.81 Aligned_cols=86 Identities=27% Similarity=0.533 Sum_probs=74.3
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~ 295 (323)
++|||+|||+.+++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+ |.+|+..|||..++|++|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999989999999999999999 99999999999999999999999987
Q ss_pred CCCCCcc
Q 020607 296 APPVLPA 302 (323)
Q Consensus 296 ~~~~~~~ 302 (323)
..+...+
T Consensus 81 ~~~~~~~ 87 (90)
T 2ki2_A 81 KSLEHHH 87 (90)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 7665443
No 150
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=131.40 Aligned_cols=83 Identities=27% Similarity=0.540 Sum_probs=75.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER-YTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~-~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
....++|||+|||+.+++++|+++|+.|| |..++++.+. .+|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999988 68999999999999999999999 899999999999999
Q ss_pred eecCCC
Q 020607 291 MANERA 296 (323)
Q Consensus 291 ~a~~~~ 296 (323)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998865
No 151
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=130.72 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..++|||+|||+++|+++|+++|++||+|..|+|++++. |+++|||||+|.+.++|.+|+. +++..++|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 457899999999999999999999999999999999986 9999999999999999999999 89999999999998754
No 152
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=129.45 Aligned_cols=84 Identities=33% Similarity=0.672 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|++.+||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCC
Q 020607 191 VPRG 194 (323)
Q Consensus 191 ~~~~ 194 (323)
....
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 5443
No 153
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-18 Score=129.49 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=78.0
Q ss_pred CCCCeEEEecCCCCCCHHHHH---HHhccCCCccEEEEeeecCCC---CcccEEEEEeCCHHHHHHHHHHhCCcEeCCee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLR---DAFQGQPGLLSAKVIFERYTG---RSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~---~~F~~~G~v~~i~i~~~~~~g---~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~ 286 (323)
...++|||+|||+.+++++|+ ++|++||.|..+.+..+..++ +++|||||+|.+.++|.+|++.|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 999999999999999887654 55699999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 020607 287 LRLNMANERAP 297 (323)
Q Consensus 287 l~V~~a~~~~~ 297 (323)
|+|.||.++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999998764
No 154
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.1e-18 Score=134.22 Aligned_cols=81 Identities=33% Similarity=0.575 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred C
Q 020607 190 E 190 (323)
Q Consensus 190 ~ 190 (323)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 155
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=130.77 Aligned_cols=87 Identities=28% Similarity=0.439 Sum_probs=81.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|++. |+..|.|++|+|.|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999998999999999999999999999997 9999999999999999
Q ss_pred CCCCCCCc
Q 020607 294 ERAPPVLP 301 (323)
Q Consensus 294 ~~~~~~~~ 301 (323)
++......
T Consensus 105 ~~~~~~~~ 112 (116)
T 1x4b_A 105 AREESGSG 112 (116)
T ss_dssp SCCCCCCS
T ss_pred CCccCCCC
Confidence 88776443
No 156
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=7e-18 Score=128.85 Aligned_cols=82 Identities=28% Similarity=0.544 Sum_probs=77.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+.+++++|+++|..||.|..|.++.+. +|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cCC
Q 020607 188 FPE 190 (323)
Q Consensus 188 ~a~ 190 (323)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 157
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=128.70 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34557899999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCC
Q 020607 189 PEVP 192 (323)
Q Consensus 189 a~~~ 192 (323)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 158
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=3.5e-18 Score=134.51 Aligned_cols=88 Identities=22% Similarity=0.415 Sum_probs=82.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020607 293 NERAPPVL 300 (323)
Q Consensus 293 ~~~~~~~~ 300 (323)
..+..+..
T Consensus 100 ~~~~~~~~ 107 (126)
T 3ex7_B 100 FVRGPPKG 107 (126)
T ss_dssp EESSSCCC
T ss_pred cCCCCCCC
Confidence 98776643
No 159
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=137.00 Aligned_cols=84 Identities=23% Similarity=0.452 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCc----ccCCeE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS----QIGGRT 183 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~----~~~gr~ 183 (323)
.+.++|||+|||+++++++|+++|.+||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .++||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999976 99999999999999999999999 999999999999 999999
Q ss_pred EEEecCCCCCC
Q 020607 184 VKVNFPEVPRG 194 (323)
Q Consensus 184 i~V~~a~~~~~ 194 (323)
|.|.++.....
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999975433
No 160
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=127.43 Aligned_cols=81 Identities=23% Similarity=0.453 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.++|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 56789999999999999999999999999999999999989999999999999999999999999999999999998875
Q ss_pred C
Q 020607 190 E 190 (323)
Q Consensus 190 ~ 190 (323)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=129.48 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=74.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC--CcEeCCeeEEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN--GVEVEGRPLRL 289 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~--~~~i~g~~l~V 289 (323)
..+.++|||+|||+.+++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.|+ +..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999854 7999999999999999999886 47999999999
Q ss_pred EeecCCCCCC
Q 020607 290 NMANERAPPV 299 (323)
Q Consensus 290 ~~a~~~~~~~ 299 (323)
.|++.+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998866553
No 162
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=125.02 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=73.4
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHh--CCcEeCCeeEEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM--NGVEVEGRPLRL 289 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l--~~~~i~g~~l~V 289 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.| ++..+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346689999999999999999999999999999988743 799999999999999999987 578899999999
Q ss_pred EeecCCCCCC
Q 020607 290 NMANERAPPV 299 (323)
Q Consensus 290 ~~a~~~~~~~ 299 (323)
.|++.+....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998766543
No 163
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=5.5e-18 Score=130.05 Aligned_cols=84 Identities=25% Similarity=0.464 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|+..+ +..++|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345678999999999999999999999999999999999989999999999999999999999975 6999999999999
Q ss_pred CCCCC
Q 020607 189 PEVPR 193 (323)
Q Consensus 189 a~~~~ 193 (323)
+....
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87543
No 164
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.5e-18 Score=128.39 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+.++|||+|||+++++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999875
No 165
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=125.05 Aligned_cols=85 Identities=28% Similarity=0.445 Sum_probs=78.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|..||.|..|+++.++.+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34566789999999999999999999999999999999999899999999999999999999998 5789999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9875543
No 166
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-18 Score=127.79 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=77.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999998876
Q ss_pred cC
Q 020607 293 NE 294 (323)
Q Consensus 293 ~~ 294 (323)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 167
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1.2e-17 Score=123.88 Aligned_cols=83 Identities=33% Similarity=0.562 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|.+||.|..|++.++ +|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999984 799999999999999999999999999999999999999
Q ss_pred CCCCC
Q 020607 189 PEVPR 193 (323)
Q Consensus 189 a~~~~ 193 (323)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87543
No 168
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-18 Score=130.34 Aligned_cols=86 Identities=14% Similarity=0.219 Sum_probs=79.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCC-ccEEEEe-eecCCCCcccEEEEEeCCHHHHHHHHHHhC--CcEeCCeeEEE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMN--GVEVEGRPLRL 289 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~-v~~i~i~-~~~~~g~~~g~afV~F~~~e~A~~Al~~l~--~~~i~g~~l~V 289 (323)
+.++|||+|||+.+++++|+++|.+||. |..+.++ .+..+|+++|||||+|.+.++|.+|++.|| +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999998 788889999999999999999999999996 59999999999
Q ss_pred EeecCCCCCC
Q 020607 290 NMANERAPPV 299 (323)
Q Consensus 290 ~~a~~~~~~~ 299 (323)
.|++++..+.
T Consensus 87 ~~a~~~~~~~ 96 (109)
T 2dis_A 87 DWAEPEIDVD 96 (109)
T ss_dssp EESCSSCSTT
T ss_pred EEcCCCCCcC
Confidence 9999877653
No 169
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=125.23 Aligned_cols=86 Identities=28% Similarity=0.550 Sum_probs=78.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++++++|+++|.+||.|..|+|+.+. +.++|||||+|.+.++|.+|+..|++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999886 348999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 187 NFPEVPRG 194 (323)
Q Consensus 187 ~~a~~~~~ 194 (323)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99875544
No 170
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=128.00 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=72.6
Q ss_pred cCCCCeEEEecCCC-CCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--cEeCCeeEE
Q 020607 212 VDSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG--VEVEGRPLR 288 (323)
Q Consensus 212 ~~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~i~g~~l~ 288 (323)
..+.++|||+|||+ .+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.||+ ..|.|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999854 58999999999999999999985 469999999
Q ss_pred EEeecCCCCC
Q 020607 289 LNMANERAPP 298 (323)
Q Consensus 289 V~~a~~~~~~ 298 (323)
|.||+.....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999975543
No 171
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.3e-17 Score=136.21 Aligned_cols=87 Identities=24% Similarity=0.482 Sum_probs=81.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|..||.|..|.|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9975443
No 172
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-17 Score=125.54 Aligned_cols=86 Identities=21% Similarity=0.332 Sum_probs=77.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|.+|++.||+..|.|++|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999998543 56799999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
++++..+..
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4a_A 96 PRSGRGTGS 104 (109)
T ss_dssp CCCCCCCCC
T ss_pred cccCCCCCC
Confidence 998766543
No 173
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-18 Score=123.13 Aligned_cols=76 Identities=32% Similarity=0.552 Sum_probs=73.4
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
++|||+|||+.+++++|+++|++||.|..+.+..++.+|+++|||||+|.+.++|.+|++.++ ..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999999987
No 174
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=129.68 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+|+++|+++|++||.|..|+++.+.. |.++|||||+|.+.++|.+|+. +||..++|+.|.|.|+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 347899999999999999999999999999999999986 9999999999999999999999 89999999999999976
Q ss_pred C
Q 020607 294 E 294 (323)
Q Consensus 294 ~ 294 (323)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 175
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=8.7e-18 Score=121.71 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=69.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
...-|+|+||++.+|+++|+++|.+||.|..+++.. ++|||||+|.+.++|.+|++.|||..++|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456899999999999999999999999999999864 58999999999999999999999999999999999984
No 176
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=130.41 Aligned_cols=83 Identities=14% Similarity=0.238 Sum_probs=77.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCc-cEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL-LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v-~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
....++|||+|||+.+++++|+++|+.||.| ..|+++.+. +|+++|||||+|.+.++|.+|++. |+..|.|++|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 899999998 999999999999999999999996 9999999999999
Q ss_pred eecCCC
Q 020607 291 MANERA 296 (323)
Q Consensus 291 ~a~~~~ 296 (323)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997754
No 177
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=126.40 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC--CcccCCeEEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVKV 186 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~--~~~~~gr~i~V 186 (323)
..+..+|||+|||+++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++ +..+.|+.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999865 5999999999999999999876 47899999999
Q ss_pred ecCCCCCC
Q 020607 187 NFPEVPRG 194 (323)
Q Consensus 187 ~~a~~~~~ 194 (323)
.++.....
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99875443
No 178
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=1.2e-17 Score=131.13 Aligned_cols=84 Identities=20% Similarity=0.532 Sum_probs=78.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+ .|||..|+|++|+|.|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3479999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred CCCCC
Q 020607 294 ERAPP 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
...+.
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 75543
No 179
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=131.85 Aligned_cols=83 Identities=18% Similarity=0.385 Sum_probs=78.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999989999999999999999999999 899999999999999998
Q ss_pred CCCC
Q 020607 294 ERAP 297 (323)
Q Consensus 294 ~~~~ 297 (323)
.+..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7543
No 180
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=6.7e-18 Score=132.88 Aligned_cols=87 Identities=24% Similarity=0.359 Sum_probs=80.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++++++|+++|..||.|..|.|+.+..+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34455679999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 020607 187 NFPEVPR 193 (323)
Q Consensus 187 ~~a~~~~ 193 (323)
.++....
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9986443
No 181
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=132.51 Aligned_cols=82 Identities=33% Similarity=0.506 Sum_probs=77.4
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 211 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
...+.++|||+|||+.+++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|++.|||..|.|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ee
Q 020607 291 MA 292 (323)
Q Consensus 291 ~a 292 (323)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 182
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=2e-17 Score=135.07 Aligned_cols=86 Identities=19% Similarity=0.344 Sum_probs=81.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|++.||+..|.|++|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876554
No 183
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=127.54 Aligned_cols=83 Identities=33% Similarity=0.599 Sum_probs=77.0
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.+..+. +.++|||||+|.+.++|.+|++.|||..++|++|+|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred ecCCC
Q 020607 292 ANERA 296 (323)
Q Consensus 292 a~~~~ 296 (323)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 184
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=122.79 Aligned_cols=81 Identities=21% Similarity=0.366 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|..| .|..|+++++ .+|+++|||||+|.+.++|.+|+. +|+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 699999999999999999999999 999999999999999
Q ss_pred CCCC
Q 020607 189 PEVP 192 (323)
Q Consensus 189 a~~~ 192 (323)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8744
No 185
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=125.29 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcE--eCCeeEEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVE--VEGRPLRLN 290 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~--i~g~~l~V~ 290 (323)
.+.++|||+|||+.+++++|+++|++||.|.++++++ .+|+|||+|.+.++|.+|++.|++.. +.|++|.|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4668999999999999999999999999999999873 47999999999999999999998865 889999999
Q ss_pred eecCC
Q 020607 291 MANER 295 (323)
Q Consensus 291 ~a~~~ 295 (323)
|++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99875
No 186
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-17 Score=121.19 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...-|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+.||.|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999965 5799999999999999999999999999999999976
No 187
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=124.73 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 110 DEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
....+|||+|||+++++++|+ ++|.+||.|..|+++.++.+ +|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345689999999999999999 99999999999999988754 79999999999999999999999999999999
Q ss_pred EecCCCC
Q 020607 186 VNFPEVP 192 (323)
Q Consensus 186 V~~a~~~ 192 (323)
|.++...
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998744
No 188
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.5e-17 Score=130.57 Aligned_cols=82 Identities=23% Similarity=0.479 Sum_probs=77.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
.++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+ .+||..|+|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 368999999999999999999999999999999999889999999999999999999999 7999999999999999875
Q ss_pred CCC
Q 020607 192 PRG 194 (323)
Q Consensus 192 ~~~ 194 (323)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 433
No 189
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-18 Score=123.29 Aligned_cols=76 Identities=26% Similarity=0.517 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
++|||+|||+++++++|+++|++||+|..+.++.++.+|+++|||||+|.+.++|.+|+..++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999988 9999999999876
No 190
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=123.42 Aligned_cols=86 Identities=29% Similarity=0.556 Sum_probs=78.2
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|+.| ..+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456899999999999999999999977 4788888888999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
++++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 2fc8_A 89 AKPKGEGGS 97 (102)
T ss_dssp CCCCCSSSC
T ss_pred ecCCCCCCC
Confidence 998776543
No 191
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=127.17 Aligned_cols=86 Identities=24% Similarity=0.324 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEe-ecCCCCCceeEEEEEECCHHHHHHHHHHhC--CcccCCeEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIV-YDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTV 184 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~~~~~~~~~g~afv~F~~~~~a~~A~~~l~--~~~~~gr~i 184 (323)
..+.++|||+|||+++++++|+++|..||. |..|.++ .+..+|+++|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446779999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEecCCCCCC
Q 020607 185 KVNFPEVPRG 194 (323)
Q Consensus 185 ~V~~a~~~~~ 194 (323)
+|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999975544
No 192
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=128.88 Aligned_cols=82 Identities=29% Similarity=0.511 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
.++|||+|||+++++++|+++|..||.|..|+++.++.+|+++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 36899999999999999999999999999999999998999999999999999999999997 99999999999999875
Q ss_pred CCC
Q 020607 192 PRG 194 (323)
Q Consensus 192 ~~~ 194 (323)
...
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 193
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=125.96 Aligned_cols=82 Identities=18% Similarity=0.279 Sum_probs=75.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccE-EEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~-i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
...++|||+|||+.+++++|+++|+.||.|.. ++++.+ .+|+++|||||+|.+.++|.+|++. |+..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45689999999999999999999999999987 888777 6899999999999999999999997 99999999999999
Q ss_pred ecCCC
Q 020607 292 ANERA 296 (323)
Q Consensus 292 a~~~~ 296 (323)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 194
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=124.30 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=71.7
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc--cCCeEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ--IGGRTV 184 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~--~~gr~i 184 (323)
....+.++|||+|||+++++++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.+++.. +.||+|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34567889999999999999999999999999999999753 5999999999999999999998875 789999
Q ss_pred EEecCCCC
Q 020607 185 KVNFPEVP 192 (323)
Q Consensus 185 ~V~~a~~~ 192 (323)
.|.+++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99998743
No 195
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=127.69 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=73.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--cEeCCeeEEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG--VEVEGRPLRL 289 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~i~g~~l~V 289 (323)
..+.++|||+|||+.+++++|+++|++||.|..++++.+ +|||||+|.+.++|.+|++.|++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345689999999999999999999999999999999864 79999999999999999999874 6899999999
Q ss_pred EeecCCCCCC
Q 020607 290 NMANERAPPV 299 (323)
Q Consensus 290 ~~a~~~~~~~ 299 (323)
.|++.+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998766543
No 196
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.8e-17 Score=120.72 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=73.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999987 459999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020607 293 NERAPPVL 300 (323)
Q Consensus 293 ~~~~~~~~ 300 (323)
+++.....
T Consensus 80 ~~~~~~~~ 87 (92)
T 2dgt_A 80 TSRLRTAS 87 (92)
T ss_dssp SCCCSCCC
T ss_pred cCCCCCCC
Confidence 98766543
No 197
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=2.2e-17 Score=128.50 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=75.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCC---ccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~---v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
...++|||+|||+.+++++|+++|+.||. |..|+++.+.. |+++|||||+|.+.++|.+|++ +|+..|+|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45689999999999999999999999998 89999999886 9999999999999999999999 9999999999999
Q ss_pred EeecC
Q 020607 290 NMANE 294 (323)
Q Consensus 290 ~~a~~ 294 (323)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 198
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.9e-17 Score=135.38 Aligned_cols=85 Identities=33% Similarity=0.553 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.....+|||+|||+++++++|+++|+.||.|..|+++.++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 020607 189 PEVPR 193 (323)
Q Consensus 189 a~~~~ 193 (323)
+....
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 87543
No 199
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=124.42 Aligned_cols=83 Identities=28% Similarity=0.550 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|.+||.|..|.+.. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 44567999999999999999999999999999999954 456899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 986544
No 200
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.6e-17 Score=137.00 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+.+++++|+.+|.+||.|..|.|+.++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34456899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 020607 189 PEVPR 193 (323)
Q Consensus 189 a~~~~ 193 (323)
+....
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 87443
No 201
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.2e-17 Score=128.18 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=71.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCC-CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
...++|||+|||+.+++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999999999999999999 899988853 35789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 020607 292 ANERAP 297 (323)
Q Consensus 292 a~~~~~ 297 (323)
++.+++
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 986543
No 202
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=128.86 Aligned_cols=83 Identities=20% Similarity=0.512 Sum_probs=74.4
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecC-CCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
.....++|||+|||+++++++|+++|+.|| |..|+++.++ .+|+++|||||+|.+.++|.+|+ .++|..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999998 68999999999999999999999 79999999999999
Q ss_pred ecCCCC
Q 020607 187 NFPEVP 192 (323)
Q Consensus 187 ~~a~~~ 192 (323)
.++...
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998743
No 203
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=125.62 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=76.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|+.|| +..++++.+. +|+++|||||+|.+.++|.+|++ +|+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34568999999999999999999999999 4599999998 89999999999999999999995 799999999999999
Q ss_pred ecCCCCC
Q 020607 292 ANERAPP 298 (323)
Q Consensus 292 a~~~~~~ 298 (323)
+......
T Consensus 89 ~~~~~~~ 95 (102)
T 1wez_A 89 NSTAGTS 95 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8876543
No 204
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=121.32 Aligned_cols=80 Identities=20% Similarity=0.401 Sum_probs=74.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456899999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020607 293 NERAPPVL 300 (323)
Q Consensus 293 ~~~~~~~~ 300 (323)
+++..+..
T Consensus 78 ~~~~~~~~ 85 (90)
T 2dnq_A 78 KNKSKASS 85 (90)
T ss_dssp SCCCCCCS
T ss_pred CCCCCCCC
Confidence 98877643
No 205
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=131.10 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=77.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||+ |||..|+|++|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999997777787899999999999999999999999 999999999999999
Q ss_pred ecCC
Q 020607 292 ANER 295 (323)
Q Consensus 292 a~~~ 295 (323)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8764
No 206
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=131.23 Aligned_cols=83 Identities=18% Similarity=0.339 Sum_probs=74.8
Q ss_pred CCCCeEEEecCCCCCCHHHHH----HHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~----~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +|+++|||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456899999999999999876 6999999999987753 678899999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 020607 289 LNMANERAPP 298 (323)
Q Consensus 289 V~~a~~~~~~ 298 (323)
|.|++.+...
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999987653
No 207
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=132.67 Aligned_cols=80 Identities=33% Similarity=0.519 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+.+++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999875
No 208
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=127.12 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=75.1
Q ss_pred cCCCCCeEEEcCCCCCC------CHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC
Q 020607 108 ASDEAARLYVGNLPYSM------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g 181 (323)
.....++|||+|||+.+ ++++|+++|++||.|..|.++ +.+|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34456799999999999 789999999999999999998 3579999999999999999999999999999999
Q ss_pred e-EEEEecCCC
Q 020607 182 R-TVKVNFPEV 191 (323)
Q Consensus 182 r-~i~V~~a~~ 191 (323)
+ .|+|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999863
No 209
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.1e-18 Score=127.51 Aligned_cols=79 Identities=39% Similarity=0.676 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~~ 192 (323)
++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.+ |.+|+..+||..++|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999989999999999999999 99999999999999999999998744
No 210
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=127.66 Aligned_cols=82 Identities=29% Similarity=0.601 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|++||.|..|+++.+. +.++|||||+|.+.++|.+|+..|+|..++|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4456799999999999999999999999999999999886 45899999999999999999999999999999999999
Q ss_pred CCCC
Q 020607 189 PEVP 192 (323)
Q Consensus 189 a~~~ 192 (323)
+..+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8743
No 211
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=125.50 Aligned_cols=82 Identities=23% Similarity=0.479 Sum_probs=77.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe--------CC
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV--------EG 284 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i--------~g 284 (323)
...++|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 999999999999999999999999999999 68
Q ss_pred eeEEEEeecCC
Q 020607 285 RPLRLNMANER 295 (323)
Q Consensus 285 ~~l~V~~a~~~ 295 (323)
++|.|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999854
No 212
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=4e-17 Score=128.10 Aligned_cols=84 Identities=29% Similarity=0.521 Sum_probs=78.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+.+++++|+++|+.||.|..|+++.+. +|+++|||||+|.+.++|.+|+..++|..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566799999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020607 188 FPEVP 192 (323)
Q Consensus 188 ~a~~~ 192 (323)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 98743
No 213
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-18 Score=131.64 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
.++|||+|||+++++++|+++|..||.|..|+++.++.+|+++|||||+|.+.++|.+|+ .+|+..|.|+.|.|.++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 368999999999999999999999999999999999989999999999999999999999 899999999999999875
No 214
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=126.78 Aligned_cols=81 Identities=12% Similarity=0.207 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCCC------CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe-e
Q 020607 214 SPHKIYAGNLGWGL------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR-P 286 (323)
Q Consensus 214 ~~~~l~V~nlp~~~------t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~-~ 286 (323)
..++|||+|||+.+ ++++|+++|++||.|..+.+. ..+|+++|||||+|.+.++|.+|+..|||..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 45799999999999 789999999999999999888 45899999999999999999999999999999998 9
Q ss_pred EEEEeecCCC
Q 020607 287 LRLNMANERA 296 (323)
Q Consensus 287 l~V~~a~~~~ 296 (323)
|+|.|+.+..
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997653
No 215
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=129.47 Aligned_cols=88 Identities=25% Similarity=0.349 Sum_probs=77.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999965544333338899999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020607 293 NERAPPVL 300 (323)
Q Consensus 293 ~~~~~~~~ 300 (323)
+++.....
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpx_A 103 KNKKQRSS 110 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCCCC
Confidence 98766543
No 216
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=126.17 Aligned_cols=83 Identities=27% Similarity=0.449 Sum_probs=76.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45689999999999999999999999999999999855 799999999999999999999999999999999999
Q ss_pred cCCCCCCCc
Q 020607 293 NERAPPVLP 301 (323)
Q Consensus 293 ~~~~~~~~~ 301 (323)
+++..+...
T Consensus 97 ~~~~~~~~~ 105 (109)
T 1x4g_A 97 KESPDMTSG 105 (109)
T ss_dssp CCCCSSCCC
T ss_pred CCCCCCCCC
Confidence 998776543
No 217
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=126.53 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
.....+|||+|||+++++++|+++|.+||.|.. |+|+.+ .+|+++|||||+|.+.++|.+|+.. ++..++||.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345679999999999999999999999999987 889888 5999999999999999999999997 9999999999998
Q ss_pred cCCC
Q 020607 188 FPEV 191 (323)
Q Consensus 188 ~a~~ 191 (323)
++..
T Consensus 90 ~~~~ 93 (104)
T 1wg5_A 90 KSSR 93 (104)
T ss_dssp EECT
T ss_pred ECCH
Confidence 8764
No 218
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=1.3e-17 Score=132.84 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+|++ +|+..|+||.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34578999999999999999999999999 89999999986 9999999999999999999999 9999999999999
Q ss_pred ecCC
Q 020607 187 NFPE 190 (323)
Q Consensus 187 ~~a~ 190 (323)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9875
No 219
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=126.74 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=78.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHH---HHHHhcCCceEEEEeecCCCC---CceeEEEEEECCHHHHHHHHHHhCCcccCC
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLA---EVFAEAGTVASAEIVYDRVTD---RSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~~---~~~g~afv~F~~~~~a~~A~~~l~~~~~~g 181 (323)
...+.++|||+|||+++++++|+ ++|.+||.|..|.++.+..++ +++|||||+|.+.++|.+|++.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34457799999999999999999 999999999999999888654 566999999999999999999999999999
Q ss_pred eEEEEecCCCCC
Q 020607 182 RTVKVNFPEVPR 193 (323)
Q Consensus 182 r~i~V~~a~~~~ 193 (323)
+.|+|.++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998554
No 220
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=126.48 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=71.9
Q ss_pred ccCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCc--ccCCeE
Q 020607 107 AASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS--QIGGRT 183 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~--~~~gr~ 183 (323)
....+.++|||+|||+ ++++++|+++|.+||.|.+|+|++++ |||||+|.+.++|.+|++.|++. .|.||.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3455788999999999 99999999999999999999998654 89999999999999999988854 599999
Q ss_pred EEEecCCCC
Q 020607 184 VKVNFPEVP 192 (323)
Q Consensus 184 i~V~~a~~~ 192 (323)
|.|.++...
T Consensus 84 l~V~~a~~~ 92 (102)
T 1x4d_A 84 VRVHLSQKY 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999998743
No 221
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=126.63 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|..||.+ .|+|++++ +|+++|||||+|.+.++|.+|+. +|+..|.||.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4556799999999999999999999999955 99999998 99999999999999999999996 799999999999998
Q ss_pred CCCC
Q 020607 189 PEVP 192 (323)
Q Consensus 189 a~~~ 192 (323)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7643
No 222
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=4.8e-18 Score=121.11 Aligned_cols=75 Identities=25% Similarity=0.450 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
+|||+|||+++++++|+++|++||+|..|.++.++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999998999999999999999999999985 999999999999864
No 223
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=120.37 Aligned_cols=80 Identities=25% Similarity=0.428 Sum_probs=73.0
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccC--CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~--G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
..+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 889888764 689999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 020607 290 NMANERAPPV 299 (323)
Q Consensus 290 ~~a~~~~~~~ 299 (323)
.|++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpd_A 84 TLAKPVDKDS 93 (99)
T ss_dssp ECCCCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999877643
No 224
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=2.1e-17 Score=131.55 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=75.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCC---ccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~---v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
...++|||+|||+.+|+++|+++|+.||. |..|+++.+.. |+++|||||+|.+.++|.+|++ +|+..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45689999999999999999999999999 89999999986 9999999999999999999999 9999999999999
Q ss_pred EeecC
Q 020607 290 NMANE 294 (323)
Q Consensus 290 ~~a~~ 294 (323)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99854
No 225
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.4e-17 Score=129.65 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
....++|||+|||+++|+++|+++|..||. |..|+|++++. |+++|||||+|.+.++|.+|++ +|+..|+||.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345678999999999999999999999999 89999999985 9999999999999999999999 899999999999
Q ss_pred EecCC
Q 020607 186 VNFPE 190 (323)
Q Consensus 186 V~~a~ 190 (323)
|.++.
T Consensus 92 V~~a~ 96 (118)
T 2db1_A 92 VFKSH 96 (118)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99875
No 226
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=121.65 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=74.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..+.++|||+|||+.+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|++.|||..+.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999998743 79999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 292 ANERAPPV 299 (323)
Q Consensus 292 a~~~~~~~ 299 (323)
++++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2cpj_A 86 ACHSASLT 93 (99)
T ss_dssp SSCCSCCC
T ss_pred cCCCCCCC
Confidence 99876543
No 227
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=125.31 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=74.9
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC--CcEeCCeeEE
Q 020607 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN--GVEVEGRPLR 288 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~--~~~i~g~~l~ 288 (323)
..+.++|||+|||+. +++++|+++|++||.|..+.++ +++|||||+|.+.++|.+|++.|| +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446789999999998 9999999999999999999987 347999999999999999999885 4669999999
Q ss_pred EEeecCCCCCCCcc
Q 020607 289 LNMANERAPPVLPA 302 (323)
Q Consensus 289 V~~a~~~~~~~~~~ 302 (323)
|.|++.+......+
T Consensus 96 V~~a~~~~~~~~~~ 109 (112)
T 1x4f_A 96 VDLSEKYKKLVSGP 109 (112)
T ss_dssp EEEECSCSSSSCCC
T ss_pred EEECccccccccCC
Confidence 99998877664443
No 228
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.1e-18 Score=129.87 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCc-eEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
..+.++|||+|||+++++++|+++|..||.| ..|+|++++ +|+++|||||+|.+.++|.+|+.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 899999999 999999999999999999999996 9999999999999
Q ss_pred cCCC
Q 020607 188 FPEV 191 (323)
Q Consensus 188 ~a~~ 191 (323)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8863
No 229
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=8.6e-18 Score=121.76 Aligned_cols=73 Identities=21% Similarity=0.382 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCe-EEE
Q 020607 113 ARLYVGNLPYSM------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR-TVK 185 (323)
Q Consensus 113 ~~lfV~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr-~i~ 185 (323)
++|||+|||+.+ ++++|+++|++||.|..|++. +.+|+++|||||+|.+.++|.+|++.|||..++|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 34799999999999999999999999999999999 887
Q ss_pred Ee
Q 020607 186 VN 187 (323)
Q Consensus 186 V~ 187 (323)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 230
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=123.96 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=71.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--cEeCCeeEEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG--VEVEGRPLRLN 290 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~i~g~~l~V~ 290 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.|++ ..+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999988743 79999999999999999998865 45999999999
Q ss_pred eecCCCCC
Q 020607 291 MANERAPP 298 (323)
Q Consensus 291 ~a~~~~~~ 298 (323)
|++.+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876553
No 231
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=120.11 Aligned_cols=78 Identities=27% Similarity=0.539 Sum_probs=72.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 456899999999999999999999999999999987 459999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
+++...
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887554
No 232
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=125.76 Aligned_cols=81 Identities=32% Similarity=0.540 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc--------CC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--------GG 181 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~--------~g 181 (323)
.+.++|||+|||+++++++|+++|..||.|..|+++.+. +|+++|||||+|.+.++|.+|+..|||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356799999999999999999999999999999999998 999999999999999999999999999999 57
Q ss_pred eEEEEecCCC
Q 020607 182 RTVKVNFPEV 191 (323)
Q Consensus 182 r~i~V~~a~~ 191 (323)
+.|.|.++..
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899988873
No 233
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1e-17 Score=133.55 Aligned_cols=85 Identities=33% Similarity=0.550 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44678999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020607 190 EVPRG 194 (323)
Q Consensus 190 ~~~~~ 194 (323)
.....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75443
No 234
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-18 Score=128.13 Aligned_cols=84 Identities=30% Similarity=0.500 Sum_probs=77.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|+.||.|.. .++.+..+|+++|||||+|.+.++|.+|++ |||..|.|++|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999988 677777789999999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
+++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 886554
No 235
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=124.86 Aligned_cols=77 Identities=22% Similarity=0.328 Sum_probs=72.3
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
..+|||+|||+.+++++|+++|+.| .|..|+|+.+.. |+++|||||+|.+.++|.+|+ .+|+..|+||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999874 999999999999999999999 5999999999999988864
No 236
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=122.13 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=72.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3468999999999999999999999999996 66664 367899999999999999999999999999999999999
Q ss_pred cCCCC
Q 020607 293 NERAP 297 (323)
Q Consensus 293 ~~~~~ 297 (323)
+++.+
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88654
No 237
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=122.16 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC-----eeE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG-----RPL 287 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g-----~~l 287 (323)
...++|||+|||+.+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|++.|||..|.| ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999854 899999999999999999999999999 999
Q ss_pred EEEeecCCCCC
Q 020607 288 RLNMANERAPP 298 (323)
Q Consensus 288 ~V~~a~~~~~~ 298 (323)
+|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999987654
No 238
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=125.82 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=73.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC--CcccCCeEEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVK 185 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~--~~~~~gr~i~ 185 (323)
...+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++.++ +..+.|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999876 5999999999999999999887 4689999999
Q ss_pred EecCCCCCCC
Q 020607 186 VNFPEVPRGG 195 (323)
Q Consensus 186 V~~a~~~~~~ 195 (323)
|.++......
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999755443
No 239
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.5e-17 Score=123.03 Aligned_cols=76 Identities=26% Similarity=0.345 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|++||.|..+++. +++|||||+|.+.++|.+|+..|||..++|++|+|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 45899999999999999999999999999999987 458999999999999999999999999999999999998
Q ss_pred CC
Q 020607 294 ER 295 (323)
Q Consensus 294 ~~ 295 (323)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 240
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=121.59 Aligned_cols=79 Identities=19% Similarity=0.388 Sum_probs=73.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC--CeeEEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE--GRPLRLN 290 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~--g~~l~V~ 290 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.|||..+. |++|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999988743 789999999999999999999999999 9999999
Q ss_pred eecCCCC
Q 020607 291 MANERAP 297 (323)
Q Consensus 291 ~a~~~~~ 297 (323)
|++++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9998765
No 241
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=126.18 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|++.|||..+.|++|.|.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 347899999999999999999999999999998863 57899999999999999999999999999999999998
Q ss_pred CCCCCCCcc
Q 020607 294 ERAPPVLPA 302 (323)
Q Consensus 294 ~~~~~~~~~ 302 (323)
...-.....
T Consensus 83 ~~~~~~~~~ 91 (111)
T 1whx_A 83 IGVFGAAPQ 91 (111)
T ss_dssp TTTTCCCCC
T ss_pred CCccCCCCC
Confidence 865544333
No 242
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=3.9e-17 Score=125.37 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....+|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999 899998853 35889999999999999999999999999999999999
Q ss_pred CCCC
Q 020607 189 PEVP 192 (323)
Q Consensus 189 a~~~ 192 (323)
+..+
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8744
No 243
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.9e-17 Score=124.03 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=75.6
Q ss_pred CCCCeEEEecCCCCCCHHHHH----HHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~----~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
.+.++|||+|||+.+++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|++.|||..++|++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999 9999999999998863 567889999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 020607 289 LNMANERAP 297 (323)
Q Consensus 289 V~~a~~~~~ 297 (323)
|.|++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999998654
No 244
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8e-17 Score=117.59 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=70.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHh-CCcEeCCeeEEEEe
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM-NGVEVEGRPLRLNM 291 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~l~V~~ 291 (323)
...++|||+|||+.+++++|+++|++||.|..+.+.. ++|||||+|.+.++|.+|++.| ||..+.|++|+|+|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 4568999999999999999999999999999999985 3799999999999999999998 99999999999999
Q ss_pred ec
Q 020607 292 AN 293 (323)
Q Consensus 292 a~ 293 (323)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 245
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.9e-17 Score=122.78 Aligned_cols=83 Identities=30% Similarity=0.520 Sum_probs=74.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|.+||.| +++.+ .+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999976 56666 589999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9976543
No 246
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=127.50 Aligned_cols=81 Identities=16% Similarity=0.381 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4557899999999999999876 6999999999988743 68899999999999999999999999999999999
Q ss_pred EEecCCCC
Q 020607 185 KVNFPEVP 192 (323)
Q Consensus 185 ~V~~a~~~ 192 (323)
+|.++...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998744
No 247
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=129.12 Aligned_cols=86 Identities=26% Similarity=0.402 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|..||.|..+.+..+..+|+++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999995443333333799999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 986544
No 248
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=8e-17 Score=123.31 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=72.7
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||..++|++|+|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999987 79999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 020607 292 ANERAPP 298 (323)
Q Consensus 292 a~~~~~~ 298 (323)
++.+..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9887653
No 249
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=127.74 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=75.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCC---ccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~---v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
...++|||+|||+.+++++|+++|+.||. |..++++.+.. |+++|||||+|.+.++|.+|++ +|+..++|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45689999999999999999999999888 89999999886 9999999999999999999999 9999999999999
Q ss_pred EeecCC
Q 020607 290 NMANER 295 (323)
Q Consensus 290 ~~a~~~ 295 (323)
.++..+
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998753
No 250
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.4e-16 Score=120.75 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..+.++ ++||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456899999999999999999999999999999887 569999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020607 293 NERAPPVL 300 (323)
Q Consensus 293 ~~~~~~~~ 300 (323)
+++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 88766543
No 251
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=117.89 Aligned_cols=78 Identities=26% Similarity=0.511 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|++||.|..|++. +|||||+|.+.++|.+|+..+|+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
+.....
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 875544
No 252
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.3e-17 Score=121.21 Aligned_cols=81 Identities=11% Similarity=0.209 Sum_probs=72.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh--CCcccCCeEEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF--DGSQIGGRTVK 185 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l--~~~~~~gr~i~ 185 (323)
...+.++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.+ ++..+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998865 699999999999999999976 57789999999
Q ss_pred EecCCCCCC
Q 020607 186 VNFPEVPRG 194 (323)
Q Consensus 186 V~~a~~~~~ 194 (323)
|.++.....
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999975443
No 253
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=7.6e-17 Score=123.78 Aligned_cols=77 Identities=23% Similarity=0.453 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCC-CCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 214 SPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
..++|||+|||+. +++++|+++|++||.|..+.+ ++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999988 3799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
+.+...
T Consensus 98 ~~~~~~ 103 (110)
T 1wf1_A 98 GEPKPD 103 (110)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 865544
No 254
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=8.1e-18 Score=119.92 Aligned_cols=75 Identities=24% Similarity=0.397 Sum_probs=71.9
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 217 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
+|||+|||+.+++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|++ +++..+.|++|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 5999999999999986
No 255
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=6.9e-18 Score=127.52 Aligned_cols=81 Identities=25% Similarity=0.371 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|..||.|.. .++.+..+|+++|||||+|.+.++|.+|++ +|+..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999988 677777789999999999999999999998 9999999999999998
Q ss_pred CCC
Q 020607 190 EVP 192 (323)
Q Consensus 190 ~~~ 192 (323)
...
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 256
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.2e-16 Score=119.88 Aligned_cols=77 Identities=18% Similarity=0.391 Sum_probs=71.7
Q ss_pred cCCCCeEEEecCCC-CCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 212 VDSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 212 ~~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
..+.++|||+|||+ .+++++|+++|++||.|..+++. +|||||+|.+.++|.+|++.|||..++|++|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999998 99999999999999999999883 7999999999999999999999999999999999
Q ss_pred eecCCC
Q 020607 291 MANERA 296 (323)
Q Consensus 291 ~a~~~~ 296 (323)
|++.+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998754
No 257
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=120.92 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=67.5
Q ss_pred CeEEEecCCCCC------CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCe-eEE
Q 020607 216 HKIYAGNLGWGL------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGR-PLR 288 (323)
Q Consensus 216 ~~l~V~nlp~~~------t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~-~l~ 288 (323)
++|||+|||+.+ ++++|+++|++||.|..+.+. ..+|+++|||||+|.+.++|.+|++.|||..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999887 45889999999999999999999999999999999 887
Q ss_pred E
Q 020607 289 L 289 (323)
Q Consensus 289 V 289 (323)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 258
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6e-17 Score=124.00 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
.+|||+|||+++++++|+++|+.| .|..|+|++++ .|+++|||||+|.+.++|.+|+ .+|+..|+||.|.|..+.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 589999999999999999999999 89999999998 4999999999999999999999 589999999999998775
No 259
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=120.53 Aligned_cols=85 Identities=34% Similarity=0.494 Sum_probs=76.9
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++++++|+++|..|+ .|.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455678999999999999999999999773 7888888889999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 187 NFPEVPRG 194 (323)
Q Consensus 187 ~~a~~~~~ 194 (323)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99986544
No 260
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=121.90 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCC--cccCCeEEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SQIGGRTVKV 186 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~--~~~~gr~i~V 186 (323)
..+.++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.+++ ..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998754 59999999999999999998865 4599999999
Q ss_pred ecCCCCCC
Q 020607 187 NFPEVPRG 194 (323)
Q Consensus 187 ~~a~~~~~ 194 (323)
.++.....
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99975443
No 261
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-17 Score=131.07 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
.....+|||+|||+++++++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|.+|+. +|+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456799999999999999999999999999987777777799999999999999999999999 999999999999998
Q ss_pred CC
Q 020607 189 PE 190 (323)
Q Consensus 189 a~ 190 (323)
+.
T Consensus 101 a~ 102 (124)
T 1wel_A 101 IT 102 (124)
T ss_dssp EC
T ss_pred CC
Confidence 75
No 262
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=5e-17 Score=121.55 Aligned_cols=81 Identities=22% Similarity=0.514 Sum_probs=73.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 355899999999999999999999999988766 347889999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 293 NERAPP 298 (323)
Q Consensus 293 ~~~~~~ 298 (323)
+++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 887653
No 263
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=127.07 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
.....+|||+|||+++++++|+++|..||. |..|+|+.++. |+++|||||+|.+.++|.+|+. +|+..++||.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999998 89999999986 9999999999999999999999 899999999999
Q ss_pred EecCC
Q 020607 186 VNFPE 190 (323)
Q Consensus 186 V~~a~ 190 (323)
|.++.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 99876
No 264
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=4.2e-17 Score=141.54 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..++|||+|||+++|+++|+++|..|| .|..|+|++|+.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 020607 189 PE 190 (323)
Q Consensus 189 a~ 190 (323)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 265
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.1e-17 Score=120.82 Aligned_cols=80 Identities=19% Similarity=0.418 Sum_probs=72.2
Q ss_pred CCCCeEEEecCCC-CCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 213 DSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 213 ~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
.+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||..+.|++|+|.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4568999999999 99999999999999999999984 78999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 020607 292 ANERAPPVL 300 (323)
Q Consensus 292 a~~~~~~~~ 300 (323)
++.+..+..
T Consensus 80 a~~~~~~~~ 88 (96)
T 2kvi_A 80 SSSNARPQF 88 (96)
T ss_dssp EECCCC---
T ss_pred cCcCCCCCC
Confidence 988776543
No 266
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=120.95 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|.+||.|..|+++.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345679999999999999999999999999999999876 59999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020607 189 PEVPRG 194 (323)
Q Consensus 189 a~~~~~ 194 (323)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 985543
No 267
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=118.98 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=71.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCC-ccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC-cEeCCeeEEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG-VEVEGRPLRLN 290 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~-v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~-~~i~g~~l~V~ 290 (323)
...++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..+.|++|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35689999999999999999999999999 5555552 479999999999999999999999 99999999999
Q ss_pred eecCCCCCC
Q 020607 291 MANERAPPV 299 (323)
Q Consensus 291 ~a~~~~~~~ 299 (323)
|++++....
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 999876543
No 268
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=3.9e-17 Score=131.41 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=74.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEE--E---eeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK--V---IFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~--i---~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l 287 (323)
.+.++|||+|||+.+++++|+++|+.||.|..+. + +....+|+++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4568999999999999999999999999998741 1 1112378999999999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q 020607 288 RLNMANERAPPV 299 (323)
Q Consensus 288 ~V~~a~~~~~~~ 299 (323)
+|.|++...+..
T Consensus 123 ~V~~a~~~~~~~ 134 (143)
T 3egn_A 123 VVQFARSARPKQ 134 (143)
T ss_dssp EEEECCCSCC--
T ss_pred EEEECCCCCCcc
Confidence 999998876543
No 269
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=119.42 Aligned_cols=79 Identities=27% Similarity=0.454 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
....++|||+|||+++++++|+++|.+||.|. +.++. ++++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44567999999999999999999999999997 66664 46889999999999999999999999999999999999
Q ss_pred CCCC
Q 020607 189 PEVP 192 (323)
Q Consensus 189 a~~~ 192 (323)
+..+
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 270
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-17 Score=122.63 Aligned_cols=78 Identities=28% Similarity=0.455 Sum_probs=73.3
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~ 295 (323)
++|||+|||+.+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|++.|||..+.|++|+|.|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999866 6899999999999999999999999999999999999987
Q ss_pred CCC
Q 020607 296 APP 298 (323)
Q Consensus 296 ~~~ 298 (323)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 271
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.2e-17 Score=127.55 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCc----eEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV----ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i----~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
....+|||+|||+++|+++|+++|++||.| ..|+|+++. +|+++|||||+|.+.++|.+|++. |+..|+||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 446789999999999999999999999975 689999985 899999999999999999999996 99999999999
Q ss_pred EecCC
Q 020607 186 VNFPE 190 (323)
Q Consensus 186 V~~a~ 190 (323)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 272
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=4.7e-17 Score=141.23 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCC--CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G--~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
..++|||+|||+.+++++|+++|++|| .|..|+|+.++.+|+++|||||+|.+.++|.+||+.||+..|.|++|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 347899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 020607 292 ANE 294 (323)
Q Consensus 292 a~~ 294 (323)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 865
No 273
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-16 Score=123.65 Aligned_cols=80 Identities=9% Similarity=0.101 Sum_probs=73.2
Q ss_pred CeEEEecC----CCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCcE
Q 020607 216 HKIYAGNL----GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET----AED----LQSALD--AMNGVE 281 (323)
Q Consensus 216 ~~l~V~nl----p~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~----~e~----A~~Al~--~l~~~~ 281 (323)
..|||+|| |+.+++.+|+++|+.||.|..+.++.|+.||+++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 888988 789999
Q ss_pred eCCeeEEEEeecCC
Q 020607 282 VEGRPLRLNMANER 295 (323)
Q Consensus 282 i~g~~l~V~~a~~~ 295 (323)
|+|++|+|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987764
No 274
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3e-18 Score=132.97 Aligned_cols=87 Identities=24% Similarity=0.411 Sum_probs=81.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccE--------EEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~--------i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
.+.++|||+|||+.+++++|+++|++||.|.. +.++.+..+|+++|||||+|.+.++|.+|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35579999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred eeEEEEeecCCCCCC
Q 020607 285 RPLRLNMANERAPPV 299 (323)
Q Consensus 285 ~~l~V~~a~~~~~~~ 299 (323)
++|+|.|++++....
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 NPIKVSFATRRADFN 99 (116)
Confidence 999999999876653
No 275
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=2e-16 Score=121.08 Aligned_cols=77 Identities=27% Similarity=0.538 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|+|..++|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4456799999999999999999999999999999997 69999999999999999999999999999999999
Q ss_pred CCCCC
Q 020607 189 PEVPR 193 (323)
Q Consensus 189 a~~~~ 193 (323)
+....
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 87543
No 276
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.8e-16 Score=119.45 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC-----eEE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-----RTV 184 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g-----r~i 184 (323)
....+|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+|++.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45679999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEecCCCCCC
Q 020607 185 KVNFPEVPRG 194 (323)
Q Consensus 185 ~V~~a~~~~~ 194 (323)
.|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999886443
No 277
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-16 Score=119.81 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..++|||+|||+++++++|+++|++||.|..+++. +++|||||+|.+.++|.+|+..|||..++|+.|+|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 45799999999999999999999999999999997 356999999999999999999999999999999999986
Q ss_pred C
Q 020607 191 V 191 (323)
Q Consensus 191 ~ 191 (323)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 278
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.5e-17 Score=124.02 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=71.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECC----HHH----HHHHHH--HhCCcc
Q 020607 113 ARLYVGNL----PYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS----VEE----AKEAIR--LFDGSQ 178 (323)
Q Consensus 113 ~~lfV~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~----~~~----a~~A~~--~l~~~~ 178 (323)
..|||+|| |+.+++.+|+++|+.||+|..+.++.|+.||+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 788888 689999
Q ss_pred cCCeEEEEecCC
Q 020607 179 IGGRTVKVNFPE 190 (323)
Q Consensus 179 ~~gr~i~V~~a~ 190 (323)
|+||.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999765
No 279
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=118.15 Aligned_cols=78 Identities=24% Similarity=0.472 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC--CeEEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG--GRTVKV 186 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~--gr~i~V 186 (323)
..+.++|||+|||+++++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.||+..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456689999999999999999999999999999998754 689999999999999999999999999 999999
Q ss_pred ecCCCC
Q 020607 187 NFPEVP 192 (323)
Q Consensus 187 ~~a~~~ 192 (323)
.++..+
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998754
No 280
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-18 Score=132.79 Aligned_cols=87 Identities=26% Similarity=0.426 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
..+.++|||+|||+++++++|+++|++||.|.. |+++.++.+|+++|||||+|.+.++|.+|+..||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345678999999999999999999999999998 999999889999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCC
Q 020607 181 GRTVKVNFPEVPRGG 195 (323)
Q Consensus 181 gr~i~V~~a~~~~~~ 195 (323)
|+.|.|.++......
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999998755443
No 281
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=5.9e-17 Score=121.36 Aligned_cols=81 Identities=19% Similarity=0.385 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
..+.++|||+|||+++++++|+ ++|++||.|..|.+.. +|+++|||||+|.+.++|.+|+..|+|..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998873 57888999999999999999999999999999999
Q ss_pred EEecCCCC
Q 020607 185 KVNFPEVP 192 (323)
Q Consensus 185 ~V~~a~~~ 192 (323)
.|.++...
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998754
No 282
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=118.83 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEE-EeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK-VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~-i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
..++|||+|||+.+++++|+++|++||.|..++ ++.+..+ |.|||+|.+.++|.+|+..|||..+.|++|+|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 468999999999999999999999999999994 7766543 34999999999999999999999999999999999
Q ss_pred cCCCC
Q 020607 293 NERAP 297 (323)
Q Consensus 293 ~~~~~ 297 (323)
.++..
T Consensus 90 ~~~~~ 94 (96)
T 2e44_A 90 PDEMA 94 (96)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 98743
No 283
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=115.28 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh-CCcccCCeEEEEe
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVN 187 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l-~~~~~~gr~i~V~ 187 (323)
..+.++|||+|||+++++++|+++|.+||.|..|++.++ +|||||+|.+.++|.+|++.| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 355689999999999999999999999999999999864 599999999999999999988 9999999999999
Q ss_pred cCC
Q 020607 188 FPE 190 (323)
Q Consensus 188 ~a~ 190 (323)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 284
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.2e-16 Score=135.60 Aligned_cols=84 Identities=29% Similarity=0.438 Sum_probs=78.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|++||.|..|+++++..+|+++|||||+|.+.++|.+|++.+|+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 020607 293 NERA 296 (323)
Q Consensus 293 ~~~~ 296 (323)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 285
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=1.6e-16 Score=122.83 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=75.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999854 456999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020607 293 NERAP 297 (323)
Q Consensus 293 ~~~~~ 297 (323)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 86443
No 286
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.6e-17 Score=126.83 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=73.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCc----cEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGL----LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v----~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
...++|||+|||+.+|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+|++. |+..|+||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345799999999999999999999999875 689998884 899999999999999999999995 99999999999
Q ss_pred EEeecC
Q 020607 289 LNMANE 294 (323)
Q Consensus 289 V~~a~~ 294 (323)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998754
No 287
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=3.7e-16 Score=117.19 Aligned_cols=77 Identities=22% Similarity=0.452 Sum_probs=70.4
Q ss_pred ccCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 107 AASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
....+.++|||+|||+ ++++++|+++|+.||.|..|++. +|||||+|.+.++|.+|+..++|..++|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456788999999998 99999999999999999999983 69999999999999999999999999999999
Q ss_pred EecCCC
Q 020607 186 VNFPEV 191 (323)
Q Consensus 186 V~~a~~ 191 (323)
|.++..
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999864
No 288
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=5.6e-16 Score=117.45 Aligned_cols=80 Identities=19% Similarity=0.437 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+++++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999986 46999999999999999999999999999999999
Q ss_pred CCCCCCCc
Q 020607 189 PEVPRGGE 196 (323)
Q Consensus 189 a~~~~~~~ 196 (323)
+.......
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 98655443
No 289
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.6e-16 Score=115.78 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=71.3
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhc--CCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
...+.++|||+|||+++++++|+++|.+| |.|..|.+. +|||||+|.+.++|.+|+..||+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 889888764 58999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 020607 186 VNFPEVPRG 194 (323)
Q Consensus 186 V~~a~~~~~ 194 (323)
|.++.....
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999975543
No 290
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.4e-16 Score=115.14 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=72.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|+ .+++++|+++|++||.|..+.+. +++|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999995 89999999999999999999884 56899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 020607 293 NERAPPVL 300 (323)
Q Consensus 293 ~~~~~~~~ 300 (323)
+++.....
T Consensus 85 ~~~~~~~~ 92 (97)
T 1x5p_A 85 RKQPMLDS 92 (97)
T ss_dssp SSCCCCCS
T ss_pred CCCCCCCC
Confidence 88766543
No 291
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=119.36 Aligned_cols=80 Identities=28% Similarity=0.487 Sum_probs=73.2
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++++++|+++|.+||.|..|++.++ +|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34456789999999999999999999999999999999854 599999999999999999999999999999999
Q ss_pred ecCCCC
Q 020607 187 NFPEVP 192 (323)
Q Consensus 187 ~~a~~~ 192 (323)
.++...
T Consensus 84 ~~a~~~ 89 (99)
T 2cpj_A 84 RFACHS 89 (99)
T ss_dssp EESSCC
T ss_pred EEcCCC
Confidence 998754
No 292
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=3.4e-16 Score=128.26 Aligned_cols=83 Identities=22% Similarity=0.471 Sum_probs=79.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
.++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999998999999999999999999999999999999999999999986
Q ss_pred CCC
Q 020607 295 RAP 297 (323)
Q Consensus 295 ~~~ 297 (323)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 293
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=5.1e-16 Score=121.80 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=73.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccE-EEEEeCCHHHHHHHHHHhCCcEeCC--eeEEEEee
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAMNGVEVEG--RPLRLNMA 292 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~-afV~F~~~e~A~~Al~~l~~~~i~g--~~l~V~~a 292 (323)
..|||+||++.+|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.| ++|+|+|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 468899999999999999999999999999887643 577 9999999999999999999999988 99999999
Q ss_pred cCCCCCCCccc
Q 020607 293 NERAPPVLPAA 303 (323)
Q Consensus 293 ~~~~~~~~~~~ 303 (323)
+.+.-.++...
T Consensus 104 k~~~l~v~~n~ 114 (130)
T 3zzy_A 104 KLTSLNVKYNN 114 (130)
T ss_dssp SCSSCCCCCCS
T ss_pred CCCceeEEecC
Confidence 98765554433
No 294
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=4.6e-16 Score=114.41 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|++| .|..+++. +++|||||+|.+.++|.+|++.|||..+.|++|+|+|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 568999999999999999999999999999999999997
Q ss_pred CCCCC
Q 020607 294 ERAPP 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
...--
T Consensus 77 ~~~~~ 81 (88)
T 1wg1_A 77 TDALL 81 (88)
T ss_dssp CCCCC
T ss_pred CCceE
Confidence 76543
No 295
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=2.9e-16 Score=129.01 Aligned_cols=85 Identities=24% Similarity=0.394 Sum_probs=80.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
+.++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020607 294 ERAPP 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
+....
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 296
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-16 Score=114.64 Aligned_cols=78 Identities=27% Similarity=0.544 Sum_probs=71.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|++||.|..|+++ ++||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999997 3599999999999999999999999999999999
Q ss_pred cCCCCC
Q 020607 188 FPEVPR 193 (323)
Q Consensus 188 ~a~~~~ 193 (323)
++....
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987553
No 297
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=114.89 Aligned_cols=79 Identities=30% Similarity=0.502 Sum_probs=72.0
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|.+|++.||+..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999997 3599999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9975443
No 298
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=6.4e-17 Score=122.37 Aligned_cols=82 Identities=26% Similarity=0.518 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|+.||.|..+.++.+. +|+++|||||+|.+.++|.+|++ ++..+.|++|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45799999999999999999999999999999999998 99999999999999999999999 9999999999999998
Q ss_pred CCCCC
Q 020607 294 ERAPP 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
.+...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76543
No 299
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=116.17 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|++||.|..| +.+..+|+ ||||+|.+.++|.+|++ |||..|+|++|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 44799999999999999999999999999987 55555555 99999999999999999 99999999999999998
Q ss_pred CCCCCC
Q 020607 294 ERAPPV 299 (323)
Q Consensus 294 ~~~~~~ 299 (323)
++....
T Consensus 81 ~~~~~~ 86 (94)
T 2e5g_A 81 QKEFQS 86 (94)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 766543
No 300
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=2e-16 Score=131.81 Aligned_cols=86 Identities=28% Similarity=0.504 Sum_probs=80.2
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
....++|||+|||+.+++++|+++|++||.|..|.+..+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 020607 292 ANERAPP 298 (323)
Q Consensus 292 a~~~~~~ 298 (323)
+......
T Consensus 164 a~~~~~~ 170 (177)
T 2f3j_A 164 VASQIDL 170 (177)
T ss_dssp ESSGGGG
T ss_pred ecCCCCC
Confidence 9875443
No 301
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6e-16 Score=115.24 Aligned_cols=79 Identities=27% Similarity=0.408 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++|||+|||+++++++|+++|..||.|..| +.++.+|+ ||||+|.+.++|.+|+. +++..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 56665666 99999999999999999 9999999999999987
Q ss_pred CCCCC
Q 020607 190 EVPRG 194 (323)
Q Consensus 190 ~~~~~ 194 (323)
.....
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 64433
No 302
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=9.2e-17 Score=120.07 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+.+++++|+++|..||.|..+ ..+|+++|||||+|.+.++|.+|+..++|..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356789999999999999999999999988766 237899999999999999999999999999999999999998
Q ss_pred CCC
Q 020607 190 EVP 192 (323)
Q Consensus 190 ~~~ 192 (323)
...
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 744
No 303
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=113.80 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=69.3
Q ss_pred CCe-EEEecCCCCCCHHH----HHHHhccC-CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 215 PHK-IYAGNLGWGLTSQG----LRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 215 ~~~-l~V~nlp~~~t~~~----L~~~F~~~-G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
..+ |||+|||+.+++++ |+++|++| |.|.+| +| |+|||+|.+.++|.+|++.|||..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344 99999999999988 55899999 599888 33 9999999999999999999999999999999
Q ss_pred EEeecCCCCCCCcc
Q 020607 289 LNMANERAPPVLPA 302 (323)
Q Consensus 289 V~~a~~~~~~~~~~ 302 (323)
|+||+.+.+.....
T Consensus 78 v~~A~~~sd~~~~~ 91 (96)
T 2diu_A 78 VSFTPKNRELCETS 91 (96)
T ss_dssp EESSCCSCCCCCCC
T ss_pred EEecCCCcceeEec
Confidence 99999998875543
No 304
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=122.02 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC--CcccCCeEEE
Q 020607 109 SDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVK 185 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~--~~~~~gr~i~ 185 (323)
..+.++|||+|||++ +++++|+++|.+||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999974 36999999999999999999875 5669999999
Q ss_pred EecCCCC
Q 020607 186 VNFPEVP 192 (323)
Q Consensus 186 V~~a~~~ 192 (323)
|.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998643
No 305
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=5.5e-17 Score=130.51 Aligned_cols=87 Identities=22% Similarity=0.352 Sum_probs=74.8
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEE--E---eecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE--I---VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~--i---~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g 181 (323)
....+.++|||+|||+++++++|+++|..||.|..+. + +....+|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3456778999999999999999999999999987741 1 1112379999999999999999999999999999999
Q ss_pred eEEEEecCCCCC
Q 020607 182 RTVKVNFPEVPR 193 (323)
Q Consensus 182 r~i~V~~a~~~~ 193 (323)
+.|.|.++....
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997543
No 306
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=5.3e-17 Score=129.65 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++|||+|||+++|+++|+++|++|| |..|+|++|+. |+++|||||+|.+.++|.+|+ .+|+..|.||.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4457899999999999999999999999 67999999985 999999999999999999999 68999999999999987
Q ss_pred CCCC
Q 020607 190 EVPR 193 (323)
Q Consensus 190 ~~~~ 193 (323)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 307
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7e-16 Score=126.24 Aligned_cols=83 Identities=29% Similarity=0.616 Sum_probs=78.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+..+|||+|||+++++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34556789999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC
Q 020607 188 FPE 190 (323)
Q Consensus 188 ~a~ 190 (323)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 875
No 308
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.2e-16 Score=120.79 Aligned_cols=78 Identities=23% Similarity=0.443 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..++|||+|||+++++++|+++|+.||.|..|+++.+. +|+++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34689999999999999999999999999999999998 99999999999999999999998 9999999999998875
Q ss_pred C
Q 020607 191 V 191 (323)
Q Consensus 191 ~ 191 (323)
.
T Consensus 85 ~ 85 (102)
T 2xs2_A 85 R 85 (102)
T ss_dssp E
T ss_pred c
Confidence 3
No 309
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=5.9e-17 Score=129.39 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=75.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+|+++|+++|++|| +..|.|+.+.. |+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567999999999999999999999999 77999999875 999999999999999999999 68999999999999998
Q ss_pred cCCCC
Q 020607 293 NERAP 297 (323)
Q Consensus 293 ~~~~~ 297 (323)
..+..
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87654
No 310
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.2e-16 Score=125.32 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCce--EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
....+|||+|||+++|+++|+++|++| .|. .|+|++|+. |+++|||||+|.+.++|.+|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 456789999999999999999999999 576 899999986 99999999999999999999985 8899999999998
Q ss_pred cCC
Q 020607 188 FPE 190 (323)
Q Consensus 188 ~a~ 190 (323)
.+.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 764
No 311
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=115.88 Aligned_cols=79 Identities=24% Similarity=0.464 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCC-cccCCeEEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG-SQIGGRTVKV 186 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~-~~~~gr~i~V 186 (323)
..+.++|||+|||+++++++|+++|.+||. |..+.+. ++|||||+|.+.++|.+|+..||| ..++|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6655552 469999999999999999999999 9999999999
Q ss_pred ecCCCCCC
Q 020607 187 NFPEVPRG 194 (323)
Q Consensus 187 ~~a~~~~~ 194 (323)
.++.....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99975433
No 312
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.3e-16 Score=125.16 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=72.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCcc--EEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 290 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~--~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~ 290 (323)
...++|||+|||+.+|+++|+++|+.| .|. .|+|+.+.. |+++|||||+|.+.++|.+|++ +++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 456789999999999999999999999 677 899998886 9999999999999999999998 58899999999999
Q ss_pred eecC
Q 020607 291 MANE 294 (323)
Q Consensus 291 ~a~~ 294 (323)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8854
No 313
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=5.7e-16 Score=118.82 Aligned_cols=76 Identities=25% Similarity=0.534 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 111 EAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 111 ~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
..++|||+|||++ +++++|+++|.+||.|..|.+ ++|||||+|.+.++|.+|++.|++..|+|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999998 4699999999999999999999999999999999998
Q ss_pred CCCCC
Q 020607 190 EVPRG 194 (323)
Q Consensus 190 ~~~~~ 194 (323)
..+..
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75433
No 314
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=8.5e-16 Score=131.50 Aligned_cols=85 Identities=21% Similarity=0.461 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++|||+|||+++++++|+++|+.||.|..|+++.+..+|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 020607 190 EVPRG 194 (323)
Q Consensus 190 ~~~~~ 194 (323)
..+..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 75533
No 315
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=5.5e-16 Score=125.68 Aligned_cols=81 Identities=26% Similarity=0.444 Sum_probs=74.5
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
....+.++|||+|||+++++++|+++|++||.|..|+++.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999876 5899999999999999999999999999999999
Q ss_pred ecCCCC
Q 020607 187 NFPEVP 192 (323)
Q Consensus 187 ~~a~~~ 192 (323)
.++..+
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998744
No 316
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=3.8e-16 Score=130.11 Aligned_cols=83 Identities=29% Similarity=0.528 Sum_probs=78.2
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|||+.+++++|+++|..||.|..|.|+.+. +|+++|||||+|.+.++|.+|++.+++..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566799999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCC
Q 020607 188 FPEV 191 (323)
Q Consensus 188 ~a~~ 191 (323)
++..
T Consensus 163 ~a~~ 166 (177)
T 2f3j_A 163 LVAS 166 (177)
T ss_dssp EESS
T ss_pred EecC
Confidence 9863
No 317
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.2e-15 Score=117.55 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=69.8
Q ss_pred eEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccE-EEEEeCCHHHHHHHHHHhCCcEeCC--eeEEEEeec
Q 020607 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAMNGVEVEG--RPLRLNMAN 293 (323)
Q Consensus 217 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~-afV~F~~~e~A~~Al~~l~~~~i~g--~~l~V~~a~ 293 (323)
.|||+||++.+++++|+++|++||.|..|+++.. .|+ |||+|.+.++|..|++.|||..|.| ++|+|.||+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999998642 375 9999999999999999999999987 699999999
Q ss_pred CCCCCCC
Q 020607 294 ERAPPVL 300 (323)
Q Consensus 294 ~~~~~~~ 300 (323)
++...+.
T Consensus 101 ~~~l~v~ 107 (124)
T 2e5i_A 101 PTRLNVI 107 (124)
T ss_dssp CSCCCCS
T ss_pred CCcceee
Confidence 8875443
No 318
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=3e-16 Score=117.40 Aligned_cols=79 Identities=20% Similarity=0.410 Sum_probs=70.5
Q ss_pred cCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEE
Q 020607 108 ASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V 186 (323)
...+.++|||+|||+ .+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999984 699999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 020607 187 NFPEVPRG 194 (323)
Q Consensus 187 ~~a~~~~~ 194 (323)
.++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99865433
No 319
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=5e-16 Score=126.40 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=72.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC--eeEEEEeec
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG--RPLRLNMAN 293 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g--~~l~V~~a~ 293 (323)
.+|||+||++.+++++|+++|++||.|.+|++..+ .++|+|||+|.+.++|.+|++.|||..|.| ++|+|+|++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 57899999999999999999999999999998643 357899999999999999999999999965 999999999
Q ss_pred CCCCCC
Q 020607 294 ERAPPV 299 (323)
Q Consensus 294 ~~~~~~ 299 (323)
++...+
T Consensus 123 ~~~l~v 128 (164)
T 1sjr_A 123 LTSLNV 128 (164)
T ss_dssp SSSCCC
T ss_pred CCcccc
Confidence 875443
No 320
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=121.01 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
..++|||+|||+++++++|+++|.+||.|..|.+.. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 356899999999999999999999999999998864 56999999999999999999999999999999999986
Q ss_pred C
Q 020607 191 V 191 (323)
Q Consensus 191 ~ 191 (323)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 321
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=1.2e-15 Score=125.78 Aligned_cols=79 Identities=24% Similarity=0.475 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...+|||+|||+++++++|+++|++||.|..+++..+..+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3688999999999999999999999999999999999889999999999999999999999999999999999999986
No 322
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=112.41 Aligned_cols=79 Identities=27% Similarity=0.372 Sum_probs=70.9
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEe
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~ 187 (323)
...+.++|||+|| ++++++|+++|.+||.|..|.+. +++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 99999999999999999999984 567999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 188 FPEVPRG 194 (323)
Q Consensus 188 ~a~~~~~ 194 (323)
++.....
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9875443
No 323
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=7.3e-16 Score=113.34 Aligned_cols=75 Identities=20% Similarity=0.354 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++|||+|||+++++++|+++|++| .|..+++. +++|||||+|.+.++|.+|++.+||..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356789999999999999999999999 99999884 57899999999999999999999999999999999998
Q ss_pred CC
Q 020607 190 EV 191 (323)
Q Consensus 190 ~~ 191 (323)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 324
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.4e-15 Score=114.29 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=72.8
Q ss_pred CCCCeEEEecCCC-----CCCHHHHHHHhccCCCccEEEEeeecCC-CCcccEEEEEeCCHHHHHHHHHHhCCcEeCCee
Q 020607 213 DSPHKIYAGNLGW-----GLTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP 286 (323)
Q Consensus 213 ~~~~~l~V~nlp~-----~~t~~~L~~~F~~~G~v~~i~i~~~~~~-g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~ 286 (323)
.+.++|+|+|+.. ..++++|+++|++||.|..+.|..++.+ ++++|+|||+|.+.++|.+|++.|||+.++||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567999999963 2378999999999999999999988654 688999999999999999999999999999999
Q ss_pred EEEEeecC
Q 020607 287 LRLNMANE 294 (323)
Q Consensus 287 l~V~~a~~ 294 (323)
|+|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 325
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.9e-16 Score=118.34 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=70.5
Q ss_pred CCCCeEEE--ecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe-----CCe
Q 020607 213 DSPHKIYA--GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV-----EGR 285 (323)
Q Consensus 213 ~~~~~l~V--~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i-----~g~ 285 (323)
.+..+||| +||++.+++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45678999 66999999999999999999999988763 379999999999999999999999999 799
Q ss_pred eEEEEeecCCCC
Q 020607 286 PLRLNMANERAP 297 (323)
Q Consensus 286 ~l~V~~a~~~~~ 297 (323)
+|.|.|++..+-
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999986443
No 326
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=112.15 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=63.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcE--eCCeeEEE
Q 020607 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVE--VEGRPLRL 289 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~--i~g~~l~V 289 (323)
..+.++|||+|||+.+++++|+++|++||.|..++++.+ ++|||||+|.+.++|.+ ++|.. +.|++|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 346789999999999999999999999999999999864 68999999999999984 45554 56999999
Q ss_pred EeecCCCC
Q 020607 290 NMANERAP 297 (323)
Q Consensus 290 ~~a~~~~~ 297 (323)
.+|.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987654
No 327
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=113.82 Aligned_cols=79 Identities=25% Similarity=0.331 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEE-EeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~-i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
...++|||+|||+++++++|+++|.+||.|..++ ++.++.+ |.|||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999994 7776644 3399999999999999999999999999999999
Q ss_pred CCCC
Q 020607 189 PEVP 192 (323)
Q Consensus 189 a~~~ 192 (323)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8754
No 328
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.6e-15 Score=127.83 Aligned_cols=86 Identities=33% Similarity=0.523 Sum_probs=77.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3557999999999999999999999999999999999999999999999999999999999985 999999999999999
Q ss_pred cCCCCCC
Q 020607 293 NERAPPV 299 (323)
Q Consensus 293 ~~~~~~~ 299 (323)
..+....
T Consensus 90 ~~~~~~~ 96 (196)
T 1l3k_A 90 VSREDSQ 96 (196)
T ss_dssp CC-----
T ss_pred cCccccc
Confidence 8765543
No 329
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=2.6e-15 Score=126.76 Aligned_cols=84 Identities=25% Similarity=0.479 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|||+.+++++|+++|++||.|..|++.++..+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCC
Q 020607 189 PEVP 192 (323)
Q Consensus 189 a~~~ 192 (323)
+...
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 330
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=117.27 Aligned_cols=78 Identities=14% Similarity=0.262 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCC---CCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEE
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~ 185 (323)
....++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.++ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 888888767 7999999999999999999999884 37777777
Q ss_pred EecC
Q 020607 186 VNFP 189 (323)
Q Consensus 186 V~~a 189 (323)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 7654
No 331
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=116.89 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=68.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCC---CCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT---GRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~---g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V 289 (323)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3468999999999999999999999999999 888887766 7999999999999999999999984 367777776
Q ss_pred Eeec
Q 020607 290 NMAN 293 (323)
Q Consensus 290 ~~a~ 293 (323)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6544
No 332
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=5e-15 Score=120.49 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC--eEEEEecCC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFPE 190 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g--r~i~V~~a~ 190 (323)
.+|||+||++.+++++|+++|++||.|.+|++..+ +++|||||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 46899999999999999999999999999998643 367999999999999999999999999965 999999997
Q ss_pred CC
Q 020607 191 VP 192 (323)
Q Consensus 191 ~~ 192 (323)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 333
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=9.3e-16 Score=118.67 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=67.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCee-----EE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRP-----LR 288 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~-----l~ 288 (323)
..++|||+|||+.+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|++.|||..|.|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999998754 89999999999999999999999999998 78
Q ss_pred EEeecCCCCC
Q 020607 289 LNMANERAPP 298 (323)
Q Consensus 289 V~~a~~~~~~ 298 (323)
|..+.++...
T Consensus 88 v~~~~~~~~~ 97 (115)
T 3beg_B 88 VKVDGPRSPS 97 (115)
T ss_dssp EEECC----C
T ss_pred eccCCCCCCC
Confidence 8777765543
No 334
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=4.6e-15 Score=112.72 Aligned_cols=83 Identities=22% Similarity=0.176 Sum_probs=74.2
Q ss_pred cCCCCCeEEEcCCCC-----CCCHHHHHHHHHhcCCceEEEEeecCCC-CCceeEEEEEECCHHHHHHHHHHhCCcccCC
Q 020607 108 ASDEAARLYVGNLPY-----SMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~-----~~te~~l~~~F~~~G~i~~v~i~~~~~~-~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g 181 (323)
...+.++|+|.|+.. +.++++|+++|++||.|.+|.|+.++.+ ++++|||||+|.+.++|.+|++.|||..++|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 345788999999973 3478999999999999999999998654 6899999999999999999999999999999
Q ss_pred eEEEEecCC
Q 020607 182 RTVKVNFPE 190 (323)
Q Consensus 182 r~i~V~~a~ 190 (323)
|.|.|.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999885
No 335
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=116.28 Aligned_cols=77 Identities=25% Similarity=0.364 Sum_probs=69.0
Q ss_pred cCCCCCeEEE--cCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc-----C
Q 020607 108 ASDEAARLYV--GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI-----G 180 (323)
Q Consensus 108 ~~~~~~~lfV--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~-----~ 180 (323)
...+.++||| +||++++++++|+++|++||.|..|.+.. .+|||||+|.+.++|.+|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456788999 77999999999999999999999998863 269999999999999999999999988 6
Q ss_pred CeEEEEecCC
Q 020607 181 GRTVKVNFPE 190 (323)
Q Consensus 181 gr~i~V~~a~ 190 (323)
|+.|.|.++.
T Consensus 95 g~~l~v~~a~ 104 (114)
T 2cq2_A 95 KITLYLNFVE 104 (114)
T ss_dssp EEECEEEEES
T ss_pred CcEEEEEecc
Confidence 8999998876
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=2.1e-15 Score=111.21 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=62.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc--cCCeEEE
Q 020607 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ--IGGRTVK 185 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~--~~gr~i~ 185 (323)
...+..+|||+|||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4556789999999999999999999999999999999864 78999999999999983 45554 4699999
Q ss_pred EecCCCC
Q 020607 186 VNFPEVP 192 (323)
Q Consensus 186 V~~a~~~ 192 (323)
|.++..+
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9988743
No 337
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.5e-15 Score=128.21 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=72.4
Q ss_pred CCCeEEEecCC-CCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 214 SPHKIYAGNLG-WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp-~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
+.++|||+||| +.+++++|+++|++||.|..++++++. +|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 899999999999999999999998653 799999999999999999999999999999999999
Q ss_pred cCCC
Q 020607 293 NERA 296 (323)
Q Consensus 293 ~~~~ 296 (323)
+...
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8654
No 338
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=108.97 Aligned_cols=75 Identities=24% Similarity=0.308 Sum_probs=66.1
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHHhc-CCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeE
Q 020607 110 DEAAR-LYVGNLPYSMTSSS----LAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (323)
Q Consensus 110 ~~~~~-lfV~nLp~~~te~~----l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~ 183 (323)
.+..| |||+|||+++++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|+|..+.||.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 45566 99999999999988 55899999 599888 34 99999999999999999999999999999
Q ss_pred EEEecCCCCCC
Q 020607 184 VKVNFPEVPRG 194 (323)
Q Consensus 184 i~V~~a~~~~~ 194 (323)
|+|+++.....
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999985443
No 339
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=8.8e-15 Score=114.73 Aligned_cols=75 Identities=25% Similarity=0.386 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeE-EEEEECCHHHHHHHHHHhCCcccCC--eEEEEecC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF-GFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFP 189 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afv~F~~~~~a~~A~~~l~~~~~~g--r~i~V~~a 189 (323)
-.|||+||++.+|+++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 357799999999999999999999999999987642 577 9999999999999999999999988 99999999
Q ss_pred CCC
Q 020607 190 EVP 192 (323)
Q Consensus 190 ~~~ 192 (323)
+..
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2.2e-15 Score=110.26 Aligned_cols=72 Identities=35% Similarity=0.695 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~ 178 (323)
.+.++|||+|||+++++++|+++|++| | .|..+++.++ +|||||+|.+.++|.+|+ .+||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346789999999999999999999999 8 8999998754 699999999999999999 899999
Q ss_pred cCCeEEEEec
Q 020607 179 IGGRTVKVNF 188 (323)
Q Consensus 179 ~~gr~i~V~~ 188 (323)
+.|+.|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 341
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.2e-15 Score=125.26 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+.++|||+|||+++++++|+++|++||.|..++++.+..+|+++|||||+|.+.++|.+|++ +++..++|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998899999999999999999999998 89999999999999987
Q ss_pred C
Q 020607 191 V 191 (323)
Q Consensus 191 ~ 191 (323)
.
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 342
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=7.1e-15 Score=124.17 Aligned_cols=123 Identities=12% Similarity=0.093 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHh--CCcccCCeEEEEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCCHHHHHHHhccCC
Q 020607 163 SVEEAKEAIRLF--DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP 240 (323)
Q Consensus 163 ~~~~a~~A~~~l--~~~~~~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G 240 (323)
+.+.+..|++.. ....+.+....|......+...... ........++|||+|||+.+++++|+++|++||
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~--------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTD--------EYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCH--------HHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccch--------hhhhccccCEEEecCCCCcCCHHHHHHHHhcCC
Confidence 567788888865 4455665555555432111000000 000011347899999999999999999999999
Q ss_pred CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCC
Q 020607 241 GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 295 (323)
Q Consensus 241 ~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~ 295 (323)
.|..|++.++. +|.++|||||+|.+.++|.+|+..+ +..++|++|.|.|+.+-
T Consensus 135 ~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 135 QVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp CEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred CEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 99999999876 5899999999999999999999865 45999999999998763
No 343
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=3.9e-15 Score=116.16 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=71.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
.+.++|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999995 69999999999999999999885 56899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020607 293 NERAPPV 299 (323)
Q Consensus 293 ~~~~~~~ 299 (323)
+++....
T Consensus 109 ~~~~~~~ 115 (121)
T 2bz2_A 109 RKQPMLD 115 (121)
T ss_dssp CSSCC--
T ss_pred CCCCCCC
Confidence 9876543
No 344
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=110.61 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=67.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
..++|||+|||+.+++++|+++|++||.|..++++.+ ++|||||+|.+.++|.+|+. .+..+.|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4589999999999999999999999999999998754 58999999999999986433 2355699999999999
Q ss_pred CCCCCC
Q 020607 294 ERAPPV 299 (323)
Q Consensus 294 ~~~~~~ 299 (323)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876654
No 345
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=5.7e-15 Score=121.91 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC---CeEEEEe
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTVKVN 187 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~---gr~i~V~ 187 (323)
..++|||+|||+++++++|+++|++||.|..+++.++. +|+++|||||+|.+.++|.+|++.|||..+. |+.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56789999999999999999999999999999999997 6999999999999999999999999998776 4999999
Q ss_pred cCC
Q 020607 188 FPE 190 (323)
Q Consensus 188 ~a~ 190 (323)
+++
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 346
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=3.2e-15 Score=115.63 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeE-----EE
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT-----VK 185 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~-----i~ 185 (323)
...+|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+|++.||+..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4578999999999999999999999999999999765 99999999999999999999999999998 66
Q ss_pred EecCC
Q 020607 186 VNFPE 190 (323)
Q Consensus 186 V~~a~ 190 (323)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 66554
No 347
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=7.3e-15 Score=124.09 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCCC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~~ 191 (323)
.++|||+|||+++++++|+++|++||.|..|+++++. +|+++|||||+|.+.++|.+|+.. .+..++|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~-~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVET-PGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHC-TTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999999999987 699999999999999999999986 45699999999998764
No 348
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=4.4e-15 Score=108.69 Aligned_cols=71 Identities=25% Similarity=0.637 Sum_probs=65.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccC----C-------CccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQ----P-------GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV 282 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~----G-------~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 282 (323)
..++|||+|||+.+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45799999999999999999999999 8 8888888643 799999999999999999 8999999
Q ss_pred CCeeEEEEe
Q 020607 283 EGRPLRLNM 291 (323)
Q Consensus 283 ~g~~l~V~~ 291 (323)
.|++|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=110.23 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
.+.++|||+|||+++++++|+++|++||.|..|+++.+ ++|||||+|.+.++|.+|.. .+..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45689999999999999999999999999999999754 68999999999999986543 244569999999998
Q ss_pred CCCCC
Q 020607 190 EVPRG 194 (323)
Q Consensus 190 ~~~~~ 194 (323)
.....
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75544
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.5e-14 Score=112.90 Aligned_cols=73 Identities=27% Similarity=0.341 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeE-EEEEECCHHHHHHHHHHhCCcccCC--eEEEEecCC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF-GFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFPE 190 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afv~F~~~~~a~~A~~~l~~~~~~g--r~i~V~~a~ 190 (323)
.|||+||++.+++++|+++|++||.|.+|+|+. + .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 367999999999999999999999999999964 2 285 9999999999999999999999987 699999987
Q ss_pred CC
Q 020607 191 VP 192 (323)
Q Consensus 191 ~~ 192 (323)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.4e-14 Score=108.64 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=71.8
Q ss_pred cCCCCeEEEecCCCCCC-----------HHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 020607 212 VDSPHKIYAGNLGWGLT-----------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~~t-----------~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~ 280 (323)
..+.++|+|+||..... +++|+++|++||.|..+.| .+. .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34678999999954432 5899999999999999966 443 47999999999999999999999999
Q ss_pred EeCCeeEEEEeecCCCCCC
Q 020607 281 EVEGRPLRLNMANERAPPV 299 (323)
Q Consensus 281 ~i~g~~l~V~~a~~~~~~~ 299 (323)
.|+|++|+|.|+.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 9999999999998876643
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=1.4e-14 Score=112.99 Aligned_cols=77 Identities=26% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEec
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~ 188 (323)
..+.++|||+|| ++++++|+++|++||.|..|.+. +++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999995 79999999999999999999985 5679999999999999999999999999999999999
Q ss_pred CCCCC
Q 020607 189 PEVPR 193 (323)
Q Consensus 189 a~~~~ 193 (323)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87553
No 353
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=8.7e-15 Score=126.78 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=70.6
Q ss_pred CCCCeEEEecCCCCC---------CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe-
Q 020607 213 DSPHKIYAGNLGWGL---------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV- 282 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~---------t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i- 282 (323)
...++|||+||+..+ ++++|+++|++||.|..|+++. ++|||||+|.+.++|..|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 456899999999998 7999999999999999999984 479999999999999999999999999
Q ss_pred -----------CCeeEEEEeecCCCCCCC
Q 020607 283 -----------EGRPLRLNMANERAPPVL 300 (323)
Q Consensus 283 -----------~g~~l~V~~a~~~~~~~~ 300 (323)
.|+.|.|.||+..++|..
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-------
T ss_pred ccccccccccCCCCEEEEEEccCCCCHHH
Confidence 899999999999887754
No 354
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=2.1e-14 Score=128.17 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=75.7
Q ss_pred CCCCeEEEecCCCCCCHHHHH----HHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~----~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
.+.++|||+|||+.+++++|+ ++|+.||.|..|++.+ +|+++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 456899999999999999977 8999999999998875 678999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 020607 289 LNMANERAP 297 (323)
Q Consensus 289 V~~a~~~~~ 297 (323)
|.|++....
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999987664
No 355
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3.8e-14 Score=107.62 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=70.6
Q ss_pred CCCeEEEecC--CCCC--------CHHHHHHHhccCCCccEEEEeeecCC--CCcccEEEEEeCCHHHHHHHHHHhCCcE
Q 020607 214 SPHKIYAGNL--GWGL--------TSQGLRDAFQGQPGLLSAKVIFERYT--GRSRGFGFVTFETAEDLQSALDAMNGVE 281 (323)
Q Consensus 214 ~~~~l~V~nl--p~~~--------t~~~L~~~F~~~G~v~~i~i~~~~~~--g~~~g~afV~F~~~e~A~~Al~~l~~~~ 281 (323)
+.+.|.|.|+ |..+ .+++|++.|++||.|..+.|+.+..+ ++++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 3333 34699999999999999999988755 3679999999999999999999999999
Q ss_pred eCCeeEEEEeecC
Q 020607 282 VEGRPLRLNMANE 294 (323)
Q Consensus 282 i~g~~l~V~~a~~ 294 (323)
++||+|+|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 356
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=2.6e-14 Score=118.29 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecC
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a 189 (323)
...++|||+|||+++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356799999999999999999999999987655 447999999999999999999999999999999999999998
Q ss_pred CC
Q 020607 190 EV 191 (323)
Q Consensus 190 ~~ 191 (323)
..
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 357
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=7.4e-14 Score=108.15 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=71.1
Q ss_pred CCCeEEEecCCC-----CCCHHHHHHHhccCCCccEEEEeeecC----CCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 214 SPHKIYAGNLGW-----GLTSQGLRDAFQGQPGLLSAKVIFERY----TGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 214 ~~~~l~V~nlp~-----~~t~~~L~~~F~~~G~v~~i~i~~~~~----~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
+.++|+|.|+-. .-.++||++.|++||.|..+.|+.+.. +++++|+|||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999942 224789999999999999999998864 35678999999999999999999999999999
Q ss_pred eeEEEEeecC
Q 020607 285 RPLRLNMANE 294 (323)
Q Consensus 285 ~~l~V~~a~~ 294 (323)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999754
No 358
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=5.5e-14 Score=121.85 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=73.8
Q ss_pred CCCCeEEEecCCC-CCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEe
Q 020607 213 DSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNM 291 (323)
Q Consensus 213 ~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~ 291 (323)
.+.++|||+|||+ .+++++|+++|++||.|..++++.+. +|||||+|.+.++|.+|++.|||..+.|++|.|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4568999999999 99999999999999999999998765 78999999999999999999999999999999999
Q ss_pred ecCCC
Q 020607 292 ANERA 296 (323)
Q Consensus 292 a~~~~ 296 (323)
++...
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 98764
No 359
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=5.3e-14 Score=118.87 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=72.7
Q ss_pred CCeEEEecCCC-CCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 215 PHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 215 ~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
.++|||+|||+ .+++++|+++|++||.|..++++.+. +|||||+|.+.++|.+|++.|||..+.|++|.|.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47899999999 99999999999999999999998764 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 020607 294 ERAP 297 (323)
Q Consensus 294 ~~~~ 297 (323)
....
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7643
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.3e-14 Score=110.04 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=64.2
Q ss_pred EecCCCCCCHHHHHHHh------------ccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeE
Q 020607 220 AGNLGWGLTSQGLRDAF------------QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287 (323)
Q Consensus 220 V~nlp~~~t~~~L~~~F------------~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l 287 (323)
+.||++.+++++|++.| ++||.|..+.+.++. +|+++|||||+|.+.++|.+|++.|||+.++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 999999999999876 47899999999999999999999999999999999
Q ss_pred EEEee
Q 020607 288 RLNMA 292 (323)
Q Consensus 288 ~V~~a 292 (323)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.8e-13 Score=104.12 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=70.5
Q ss_pred ccCCCCCeEEEcCCCCCCC-----------HHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 020607 107 AASDEAARLYVGNLPYSMT-----------SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (323)
Q Consensus 107 ~~~~~~~~lfV~nLp~~~t-----------e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~ 175 (323)
....+.++|+|.||....+ +++|+++|.+||.|..|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3456788999999954432 6899999999999999965 444 379999999999999999999999
Q ss_pred CcccCCeEEEEecCCCC
Q 020607 176 GSQIGGRTVKVNFPEVP 192 (323)
Q Consensus 176 ~~~~~gr~i~V~~a~~~ 192 (323)
|..|+||.|.|.++...
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 99999999999998754
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=6.5e-14 Score=121.32 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc
Q 020607 109 SDEAARLYVGNLPYSM---------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~ 179 (323)
....++|||+||+..+ +|++|+++|++||+|.+|+|+.+ +|||||+|.+.++|..|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999999854 69999999999999999999999999
Q ss_pred ------------CCeEEEEecCCCCC
Q 020607 180 ------------GGRTVKVNFPEVPR 193 (323)
Q Consensus 180 ------------~gr~i~V~~a~~~~ 193 (323)
.|+.|.|.++....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=2.1e-14 Score=108.87 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 117 VGNLPYSMTSSSLAEVF------------AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 117 V~nLp~~~te~~l~~~F------------~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
+.+||+.+++++|++.| ++||.|.+|.|.++. +++++|||||+|.+.++|.+|++.|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666666666555 999999999999887 58999999999999999999999999999999999
Q ss_pred EEecC
Q 020607 185 KVNFP 189 (323)
Q Consensus 185 ~V~~a 189 (323)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=1.2e-13 Score=104.93 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=70.9
Q ss_pred CCCCeEEEcCC--CCCC--------CHHHHHHHHHhcCCceEEEEeecCCC--CCceeEEEEEECCHHHHHHHHHHhCCc
Q 020607 110 DEAARLYVGNL--PYSM--------TSSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (323)
Q Consensus 110 ~~~~~lfV~nL--p~~~--------te~~l~~~F~~~G~i~~v~i~~~~~~--~~~~g~afv~F~~~~~a~~A~~~l~~~ 177 (323)
.+.++|.|.|+ |.+. .+++|+++|++||.|.+|.|.++..+ ++++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 3333 34789999999999999999988754 478999999999999999999999999
Q ss_pred ccCCeEEEEecCC
Q 020607 178 QIGGRTVKVNFPE 190 (323)
Q Consensus 178 ~~~gr~i~V~~a~ 190 (323)
.++||.|.|.+..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999865
No 365
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=3.1e-13 Score=119.41 Aligned_cols=77 Identities=25% Similarity=0.462 Sum_probs=71.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEee
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 292 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a 292 (323)
...++|||+|||+.+|+++|+++|+.||.|..+.+. +++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 345789999999999999999999999999999985 34799999999999999999999999999999999998
Q ss_pred cCC
Q 020607 293 NER 295 (323)
Q Consensus 293 ~~~ 295 (323)
.+.
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 763
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=2.3e-13 Score=105.39 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHHhcCCceEEEEeecCC----CCCceeEEEEEECCHHHHHHHHHHhCCcccC
Q 020607 110 DEAARLYVGNLPY-----SMTSSSLAEVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 110 ~~~~~lfV~nLp~-----~~te~~l~~~F~~~G~i~~v~i~~~~~----~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
.+.++|+|.|+-. +--+++|+++|++||.|.+|.|+++.. +++++|+|||+|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3688999999952 234789999999999999999999864 4678899999999999999999999999999
Q ss_pred CeEEEEecCC
Q 020607 181 GRTVKVNFPE 190 (323)
Q Consensus 181 gr~i~V~~a~ 190 (323)
||.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999865
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=97.95 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecCCCCCC
Q 020607 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPV 299 (323)
Q Consensus 225 ~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~~~~~~ 299 (323)
..+++++|+++|++||.|..|.++ ++++|||||+|.+.++|..|++.+++ +.|++|+|.|++.+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 468999999999999999999987 46799999999999999999997554 689999999998876543
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=3.5e-12 Score=98.03 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCeEEEecCCCCC----------CHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC
Q 020607 214 SPHKIYAGNLGWGL----------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE 283 (323)
Q Consensus 214 ~~~~l~V~nlp~~~----------t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~ 283 (323)
+.++|.+.|+-... .++||++.|++||.|..+.+.++. ++|+|||+|.+.++|.+|++.|||+.++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45689999984322 245889999999999999886542 4899999999999999999999999999
Q ss_pred CeeEEEEeecC
Q 020607 284 GRPLRLNMANE 294 (323)
Q Consensus 284 g~~l~V~~a~~ 294 (323)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-11 Score=92.15 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 112 AARLYVGNLP-------YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 112 ~~~lfV~nLp-------~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
..+|.|.-.. ..+++++|+++|++||.|..|+|+ ++++|||||+|.+.++|..|++.+ ..+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeE
Confidence 3455555443 568999999999999999999997 478999999999999999999964 44789999
Q ss_pred EEecCCCCC
Q 020607 185 KVNFPEVPR 193 (323)
Q Consensus 185 ~V~~a~~~~ 193 (323)
+|.++....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987554
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=5.2e-12 Score=115.09 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=65.9
Q ss_pred cCCCCeEEEec--CCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeC---Ce-
Q 020607 212 VDSPHKIYAGN--LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVE---GR- 285 (323)
Q Consensus 212 ~~~~~~l~V~n--lp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~---g~- 285 (323)
..+..+|||+| |++.+|+++|+++|++||.|..|.+.. +||||||+|.+.++|.+|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34668999999 578999999999999999999887652 4799999999999999999999999883 44
Q ss_pred -eEEEEeec
Q 020607 286 -PLRLNMAN 293 (323)
Q Consensus 286 -~l~V~~a~ 293 (323)
.+.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888875
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=2.1e-11 Score=93.69 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCccc
Q 020607 110 DEAARLYVGNLPYSMT----------SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~t----------e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~ 179 (323)
.+.++|.+.|+=.... +++|+++|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4677888888754322 45789999999999999986543 589999999999999999999999999
Q ss_pred CCeEEEEecCC
Q 020607 180 GGRTVKVNFPE 190 (323)
Q Consensus 180 ~gr~i~V~~a~ 190 (323)
+||.|.|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999875
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.9e-11 Score=111.32 Aligned_cols=78 Identities=26% Similarity=0.390 Sum_probs=66.9
Q ss_pred ccCCCCCeEEEcC--CCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC---C
Q 020607 107 AASDEAARLYVGN--LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG---G 181 (323)
Q Consensus 107 ~~~~~~~~lfV~n--Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~---g 181 (323)
....+..+|||+| |++.+||++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3467788999999 589999999999999999999987753 4699999999999999999999999873 5
Q ss_pred e--EEEEecCC
Q 020607 182 R--TVKVNFPE 190 (323)
Q Consensus 182 r--~i~V~~a~ 190 (323)
+ .+.|.+..
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 56777764
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.8e-10 Score=83.32 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=63.1
Q ss_pred CCCCeEEEecCC----CCCCH----HHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 213 DSPHKIYAGNLG----WGLTS----QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 213 ~~~~~l~V~nlp----~~~t~----~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
++..+|+|.-.+ .++-. .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|++ |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 455788888776 33444 5789999999999999998653 8999999999999999 99999999
Q ss_pred eeEEEEeecCC
Q 020607 285 RPLRLNMANER 295 (323)
Q Consensus 285 ~~l~V~~a~~~ 295 (323)
|.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999864
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.4e-10 Score=87.17 Aligned_cols=75 Identities=7% Similarity=0.023 Sum_probs=66.8
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCC-HHHHHHHHHHh--CCcEeCCeeE
Q 020607 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET-AEDLQSALDAM--NGVEVEGRPL 287 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~-~e~A~~Al~~l--~~~~i~g~~l 287 (323)
...++.|+|+||++. +++++|+++|++||.|.+|.+..+. ..|||+|.+ ..+|..|+..+ .+..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456789999999999 9999999999999999999998664 359999999 89999999999 4788999999
Q ss_pred EEEee
Q 020607 288 RLNMA 292 (323)
Q Consensus 288 ~V~~a 292 (323)
+++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=78.96 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccC
Q 020607 109 SDEAARLYVGNLP----YSMTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 109 ~~~~~~lfV~nLp----~~~te----~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
..+..||+|.-.+ ...-. .+|...|.+||.|..++++.++ +||+|.+.++|.+|++ |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 4567788888776 22333 6789999999999999999765 8999999999999998 9999999
Q ss_pred CeEEEEecCCCCC
Q 020607 181 GRTVKVNFPEVPR 193 (323)
Q Consensus 181 gr~i~V~~a~~~~ 193 (323)
||.|+|+++....
T Consensus 75 Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 75 NRTITIALKSPSG 87 (91)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEeCCCCc
Confidence 9999999887543
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.4e-09 Score=83.69 Aligned_cols=76 Identities=14% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECC-HHHHHHHHHHhC--CcccCCeEE
Q 020607 109 SDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS-VEEAKEAIRLFD--GSQIGGRTV 184 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~-~~~a~~A~~~l~--~~~~~gr~i 184 (323)
-.....|+|+||+++ +++++|+++|++||.|..|.++++. ..|||.|.+ +.+|..|++.++ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345678999999999 9999999999999999999998876 259999999 899999999984 788999988
Q ss_pred EEecCC
Q 020607 185 KVNFPE 190 (323)
Q Consensus 185 ~V~~a~ 190 (323)
++.+..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=1.8e-09 Score=92.74 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=61.3
Q ss_pred CCHHHHHHHhccCCCccEEEEeeecC----CCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeecC
Q 020607 227 LTSQGLRDAFQGQPGLLSAKVIFERY----TGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANE 294 (323)
Q Consensus 227 ~t~~~L~~~F~~~G~v~~i~i~~~~~----~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~~ 294 (323)
-.+++|++.|++||.|..+.|..+.. +|+++|++||+|.+.++|.+|++.|||+.++||.|.+.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 46789999999999999999986654 458999999999999999999999999999999999999753
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.7e-09 Score=78.57 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=62.6
Q ss_pred cCCCCeEEEecCCCC-----CCH----HHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEe
Q 020607 212 VDSPHKIYAGNLGWG-----LTS----QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEV 282 (323)
Q Consensus 212 ~~~~~~l~V~nlp~~-----~t~----~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 282 (323)
.++..+|+|.-++.. +-. .+|.+.|..||.|..+++..+. +||+|.+.++|.+|++ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456689999988643 333 4689999999999999998553 9999999999999999 999999
Q ss_pred CCeeEEEEeecC
Q 020607 283 EGRPLRLNMANE 294 (323)
Q Consensus 283 ~g~~l~V~~a~~ 294 (323)
+||.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998643
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=4.1e-09 Score=90.50 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHhcCCceEEEEeecCC----CCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEEEEecCC
Q 020607 123 SMTSSSLAEVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (323)
Q Consensus 123 ~~te~~l~~~F~~~G~i~~v~i~~~~~----~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i~V~~a~ 190 (323)
+-.+++|++.|.+||.|.++.+.++.. +++++|++||+|.+.++|.+|++.|||+.++||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 345788999999999999999986653 45899999999999999999999999999999999999875
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=4.6e-09 Score=76.35 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=63.2
Q ss_pred cCCCCCeEEEcCCCCC-----CCH----HHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcc
Q 020607 108 ASDEAARLYVGNLPYS-----MTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (323)
Q Consensus 108 ~~~~~~~lfV~nLp~~-----~te----~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~ 178 (323)
...+..||+|.-++.+ +-. .+|.+.|..||.|..++++.++ +||+|.+.++|.+|++ |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4567789999888643 222 5689999999999999999775 9999999999999998 99999
Q ss_pred cCCeEEEEecCC
Q 020607 179 IGGRTVKVNFPE 190 (323)
Q Consensus 179 ~~gr~i~V~~a~ 190 (323)
+.||.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998743
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=4.5e-07 Score=67.23 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=66.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhccC-----CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeE
Q 020607 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQ-----PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPL 287 (323)
Q Consensus 213 ~~~~~l~V~nlp~~~t~~~L~~~F~~~-----G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l 287 (323)
+..++|-+-|||..+++..|+.+...+ |.+.++.+..|- +-|+|+|.+...|.+|.-.|+|..|.||+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346789999999999999999999999 999999998773 679999999999999998899999999999
Q ss_pred EEEe
Q 020607 288 RLNM 291 (323)
Q Consensus 288 ~V~~ 291 (323)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=9.7e-07 Score=65.43 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc-----CCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAEA-----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
+..++|-+-|||-.++...|+.+.+.+ |.|..|.++.|. |-|+|+|.+...|-+|.=.|+|..|.||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346789999999999999999999999 999999999887 889999999999998887899999999999
Q ss_pred EEe
Q 020607 185 KVN 187 (323)
Q Consensus 185 ~V~ 187 (323)
++-
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 985
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=2.7e-05 Score=57.25 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh---c--CCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 110 DEAARLYVGNLPYSMTSSSLAEVFAE---A--GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~te~~l~~~F~~---~--G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
....+|.|.|||..+.++.|+-+|+. - |+|..|.... +-|+|+|.+.+.|++.++. ..+.|+|.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45678999999999999999999997 2 5888877742 5799999999999999984 5789999999
Q ss_pred EEecCCCCCCCccccCCCCccCCCCCccCCCCeEEEecCCCCCC
Q 020607 185 KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228 (323)
Q Consensus 185 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 228 (323)
.|.... ...+.+|++.||+..++
T Consensus 77 sV~P~~---------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAP---------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECC---------------------CCCCCCCCCCSCCCCCC
T ss_pred EEEcCC---------------------CCCcceEeeecCCCCCC
Confidence 997543 23446789999988765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=0.00011 Score=54.27 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=62.7
Q ss_pred CCCeEEEecCCCCC-C----HHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 214 SPHKIYAGNLGWGL-T----SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 214 ~~~~l~V~nlp~~~-t----~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
-+++|+|.||+..+ . .+.++++|..|+.+.....++. =.-..|.|.+.++|.+|-..||+..+.|++++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998765 3 2567899999998887666633 23468999999999999999999999999999
Q ss_pred EEeecC
Q 020607 289 LNMANE 294 (323)
Q Consensus 289 V~~a~~ 294 (323)
|.++++
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999994
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.00022 Score=51.66 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=56.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCC--ceeEEEEEECCHHHHHHHHHHhCCcccC
Q 020607 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 113 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~--~~g~afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
.+|.|++||+..||+++.+.++....+.....+..+.+.+ ...-|||.|.+.+++....+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4689999999999999999999998877777766553332 2356999999999999999999999874
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.00085 Score=49.46 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCC-C----HHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCCeEE
Q 020607 110 DEAARLYVGNLPYSM-T----SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (323)
Q Consensus 110 ~~~~~lfV~nLp~~~-t----e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~gr~i 184 (323)
+-.++|+|.||+.++ . .+.++.+|..|+++......+.- .-.-|.|.++++|.+|...||+..++|+++
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 345789999998654 2 25789999999999888777554 357899999999999999999999999999
Q ss_pred EEecCC
Q 020607 185 KVNFPE 190 (323)
Q Consensus 185 ~V~~a~ 190 (323)
+|.++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999987
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.41 E-value=0.0014 Score=47.29 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=56.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCC--cccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR--SRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~--~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
++|.|++||.++|++++.+.++....+........+.+.+ .-.-|+|.|.+.+++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5799999999999999999999988776666655543332 23569999999999999999999988844
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.0043 Score=45.51 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccC-----CCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEE
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQ-----PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLR 288 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~-----G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~ 288 (323)
...+|.|.|||..+.++.|.-+|+.- |.|..+.... +-|+|+|.+.+.|++.|+ -..+.+.|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 34789999999999999999999762 5566666642 569999999999999997 237889999999
Q ss_pred EEeecCCCCC
Q 020607 289 LNMANERAPP 298 (323)
Q Consensus 289 V~~a~~~~~~ 298 (323)
|.-.-++.+.
T Consensus 78 V~P~~~~~~~ 87 (104)
T 2dhx_A 78 LRPAPPRAPA 87 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEcCCCCCcc
Confidence 9876665554
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.00 E-value=0.005 Score=44.63 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=45.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~ 278 (323)
...++| +.|..+...||.++|+.||. ..|..+-| ..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 455666 99999999999999999984 45566544 479999999999999999763
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.0036 Score=47.37 Aligned_cols=73 Identities=7% Similarity=0.044 Sum_probs=60.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCC-eeEEEEee
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEG-RPLRLNMA 292 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g-~~l~V~~a 292 (323)
..+-|.|-+.|.. ....|...|++||.|.+.... ....+-.|+|.+..+|++||. .||..++| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 3567999999988 477889999999999987752 235799999999999999999 69999984 77888776
Q ss_pred cC
Q 020607 293 NE 294 (323)
Q Consensus 293 ~~ 294 (323)
.+
T Consensus 95 ~d 96 (119)
T 1wwh_A 95 ID 96 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.88 E-value=0.0041 Score=45.10 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=48.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh
Q 020607 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174 (323)
Q Consensus 109 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l 174 (323)
....+.++| +.|..+.-.||.++|+.||.| .|+.+-|. -|||.|.+.+.|..|+..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 344556777 999999999999999999955 57777664 7999999999999999865
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.72 E-value=0.0011 Score=48.35 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=48.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCC--ceeEEEEEECCHHHHHHHHHHhCCcccC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~--~~g~afv~F~~~~~a~~A~~~l~~~~~~ 180 (323)
.-.|.|++||+..||+++.+.+..+-.+.....+..+.+.+ .-.-|||.|.+.+++....+.++|..|.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45799999999999999877776654432222222221111 1245899999999999999999999874
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.70 E-value=0.0022 Score=49.30 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=57.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEE-Eee------------ecCCC-CcccEEEEEeCCHHHHHHHHHHhCCc
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK-VIF------------ERYTG-RSRGFGFVTFETAEDLQSALDAMNGV 280 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~-i~~------------~~~~g-~~~g~afV~F~~~e~A~~Al~~l~~~ 280 (323)
..-|.|-+.|.. ....+.+.|++||.|.+-. ... .+..+ ...++..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456888888765 5667888999999997622 111 00011 135789999999999999999 6999
Q ss_pred EeCCeeEEEEeecC
Q 020607 281 EVEGRPLRLNMANE 294 (323)
Q Consensus 281 ~i~g~~l~V~~a~~ 294 (323)
.|+|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999988753
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.57 E-value=0.0064 Score=45.99 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhCCcccCC-eEEEEecC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-RTVKVNFP 189 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~~~~~~g-r~i~V~~a 189 (323)
..-|.|-+.|... ...|.++|.+||.|.+.... ....+..|.|.+..+|++|+.. ||..+.| -.|=|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 4568888999885 67788899999999987762 1247999999999999999985 9999985 55666654
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.56 E-value=0.0019 Score=46.94 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=44.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~ 278 (323)
..++| +.|..+...||.++|+.|| -..|..+-| ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999998 445555544 479999999999999999774
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.55 E-value=0.0072 Score=43.96 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=50.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCC--cccEEEEEeCCHHHHHHHHHHhCCcEeCC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR--SRGFGFVTFETAEDLQSALDAMNGVEVEG 284 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~--~~g~afV~F~~~e~A~~Al~~l~~~~i~g 284 (323)
.-+|.|+.||.++|++++.+.++..-.+........+.+.+ .-..|+|.|.+.++...-.+.++|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35799999999999999888887654432222222222211 12459999999999999999999988844
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.16 E-value=0.0058 Score=44.41 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=45.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 020607 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (323)
Q Consensus 114 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~ 175 (323)
.++| +.|..+.-.||.++|+.||.| .|..+-|. -|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4666 999999999999999999943 57777664 79999999999999999764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.20 E-value=0.011 Score=55.58 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 020607 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (323)
Q Consensus 111 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~ 173 (323)
..++|+|. .|..+++.+|.++|.+||+|.++.+..+. .-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 45689997 79999999999999999999999887654 37999999999999877753
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.60 E-value=0.022 Score=53.53 Aligned_cols=55 Identities=7% Similarity=-0.028 Sum_probs=41.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 020607 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (323)
Q Consensus 216 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 276 (323)
++|+|. .|...++.+|.+.|++||.|..+....+. ..||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 679997 78899999999999999999998877543 37999999999999977653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.60 E-value=0.073 Score=40.80 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=52.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEeec------------CCCC-CceeEEEEEECCHHHHHHHHHHhCCc
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYD------------RVTD-RSRGFGFVTMGSVEEAKEAIRLFDGS 177 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~------------~~~~-~~~g~afv~F~~~~~a~~A~~~l~~~ 177 (323)
...|.|-+.|.+.. ..+-+.|++||.|.+ +..... +..+ ...++..|.|.+..+|.+|+.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 44677778865554 567789999999865 211110 0000 1246789999999999999985 999
Q ss_pred ccCCeEEEEecC
Q 020607 178 QIGGRTVKVNFP 189 (323)
Q Consensus 178 ~~~gr~i~V~~a 189 (323)
.|.|.-|=|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999986666554
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.17 E-value=2.6 Score=40.06 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=44.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 020607 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (323)
Q Consensus 215 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~ 278 (323)
+..++|+ .|..+...+|.++|+.||. ..|+.+. ...|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wid-------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWID-------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECS-------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEc-------CCeEEEEECCHHHHHHHHHHHH
Confidence 3456665 8999999999999999984 4555542 3479999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.21 E-value=3.5 Score=39.12 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhC
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~l~ 175 (323)
...++|+ +|..+...+|.+.|+.||.+ .|+.+-+ ..|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3466666 99999999999999999954 5665544 369999999999999999874
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=59.77 E-value=42 Score=23.51 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhccCCCccEEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 020607 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (323)
Q Consensus 214 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l 277 (323)
..|-+.+-|+|..+-..++.-.....|---.+..+ .|.|.++|.+.++-.-|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 35778999999999999887777666655556554 467999999999999999887
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.84 E-value=33 Score=27.32 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=38.9
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--HhcCCceEEEEeecCCCCCceeEEEEEECCH-HHHHHHHH
Q 020607 114 RLYVGNLPY-S--------MTSSSLAEVF--AEAGTVASAEIVYDRVTDRSRGFGFVTMGSV-EEAKEAIR 172 (323)
Q Consensus 114 ~lfV~nLp~-~--------~te~~l~~~F--~~~G~i~~v~i~~~~~~~~~~g~afv~F~~~-~~a~~A~~ 172 (323)
.+.|-|+|. . ....+|++.| ..|.+++ |+.+++. ..++|+|.|.|.+. ..-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 466778886 2 3347899988 8898875 7777776 44679999999763 33444443
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=44.24 E-value=10 Score=25.44 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCCHHHHHHHhccCCCcc-----EEEEeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcEeCCeeEEEEeec
Q 020607 226 GLTSQGLRDAFQGQPGLL-----SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMAN 293 (323)
Q Consensus 226 ~~t~~~L~~~F~~~G~v~-----~i~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~l~V~~a~ 293 (323)
.+...+|..++..-+.+. .|.+. ..+.||+-... .|..+++.|++..+.|+++.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 456677777776555442 34443 35788887654 4677888899999999999998764
No 406
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=29.38 E-value=49 Score=24.09 Aligned_cols=48 Identities=4% Similarity=-0.017 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHh-cCCceE---EEEeecC-CCCCceeEEEEEECCHHHHHHH
Q 020607 122 YSMTSSSLAEVFAE-AGTVAS---AEIVYDR-VTDRSRGFGFVTMGSVEEAKEA 170 (323)
Q Consensus 122 ~~~te~~l~~~F~~-~G~i~~---v~i~~~~-~~~~~~g~afv~F~~~~~a~~A 170 (323)
...+..+|++-+.. |+.-.+ |.-++.. -.|++.|||.| |.+.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35678888877765 553222 2222222 23678899977 8888887753
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.80 E-value=1.2e+02 Score=24.04 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=35.6
Q ss_pred eEEEecCCC---------CCCHHHHHHHh--ccCCCccEEEEeeecCCCCcccEEEEEeCC-HHHHHHHH
Q 020607 217 KIYAGNLGW---------GLTSQGLRDAF--QGQPGLLSAKVIFERYTGRSRGFGFVTFET-AEDLQSAL 274 (323)
Q Consensus 217 ~l~V~nlp~---------~~t~~~L~~~F--~~~G~v~~i~i~~~~~~g~~~g~afV~F~~-~e~A~~Al 274 (323)
.+.|-|+|. ..+..+|++.| ..|.++. ++.+... . -.+|+|.|+|.+ -.--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~-Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-L-GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-S-BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-C-CCceeEEEEecCChHHHHHHH
Confidence 566777776 24567899977 8996654 5555444 2 357899999984 33333344
No 408
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=26.94 E-value=42 Score=24.19 Aligned_cols=50 Identities=8% Similarity=0.154 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHh-cCC---ceEEEEeecC-CCCCceeEEEEEECCHHHHHHHHH
Q 020607 122 YSMTSSSLAEVFAE-AGT---VASAEIVYDR-VTDRSRGFGFVTMGSVEEAKEAIR 172 (323)
Q Consensus 122 ~~~te~~l~~~F~~-~G~---i~~v~i~~~~-~~~~~~g~afv~F~~~~~a~~A~~ 172 (323)
...+..+|++.+.. |+. +.-|.-++.. -.|++.|||.| |.+.+.|++.-.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Ep 82 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQ 82 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 55677888877765 553 2223223332 23678899977 888888776554
No 409
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.38 E-value=44 Score=24.12 Aligned_cols=47 Identities=4% Similarity=0.025 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHh-cCC---ceEEEEeecC-CCCCceeEEEEEECCHHHHHH
Q 020607 122 YSMTSSSLAEVFAE-AGT---VASAEIVYDR-VTDRSRGFGFVTMGSVEEAKE 169 (323)
Q Consensus 122 ~~~te~~l~~~F~~-~G~---i~~v~i~~~~-~~~~~~g~afv~F~~~~~a~~ 169 (323)
...+..+|++-+.. |+. +.-|.-++.. -.|++.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888877765 553 2222223332 23688899977 888887765
No 410
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.82 E-value=15 Score=30.99 Aligned_cols=19 Identities=32% Similarity=0.301 Sum_probs=0.0
Q ss_pred Ccccchhh-hcchhhhhhhc
Q 020607 1 MAASTVSM-AASSSLCNKLY 19 (323)
Q Consensus 1 ~~~~~~~~-~~s~~~~~~~~ 19 (323)
||+.+.|+ |+|++.+-++.
T Consensus 1 ~~~~~~~~~c~~~~~~~~~~ 20 (257)
T 3bbo_T 1 MASATLAFSCSSLCATLKLP 20 (257)
T ss_dssp --------------------
T ss_pred CcceEEEeeeccceeeeecc
Confidence 88888887 77776655444
No 411
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=23.99 E-value=44 Score=23.89 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHh-cCCceEEEEeecCCC----CCceeEEEEEECCHHHHHHH
Q 020607 122 YSMTSSSLAEVFAE-AGTVASAEIVYDRVT----DRSRGFGFVTMGSVEEAKEA 170 (323)
Q Consensus 122 ~~~te~~l~~~F~~-~G~i~~v~i~~~~~~----~~~~g~afv~F~~~~~a~~A 170 (323)
...+..+|++.+.. |+.-.++.++..-.| |++.|||.| |.+.+.|++.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677787766664 543233333333322 678888877 6666666554
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.79 E-value=1.8e+02 Score=20.04 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHh-cC-CceEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 020607 119 NLPYSMTSSSLAEVFAE-AG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (323)
Q Consensus 119 nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afv~F~~~~~a~~A~~~ 173 (323)
.....++..+|++.++. || .|..|.....+ .| .--|||.+....+|......
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 37789999999999997 66 67777776544 22 23599999877776655443
No 413
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.07 E-value=73 Score=27.19 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=27.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeec
Q 020607 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD 147 (323)
Q Consensus 112 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 147 (323)
...+.|+||||.++..-|.+++.. +.+....++..
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 346899999999999999999988 66665555443
No 414
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=20.75 E-value=1e+02 Score=23.75 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHh-cCCceEEEEeecCC----CCCceeEEEEEECCHHHHHHH
Q 020607 122 YSMTSSSLAEVFAE-AGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEA 170 (323)
Q Consensus 122 ~~~te~~l~~~F~~-~G~i~~v~i~~~~~----~~~~~g~afv~F~~~~~a~~A 170 (323)
...+..+|++.+.. |+.-.++.++.... .|++.|||.| |.+.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 45678888887775 66422222222221 3678899988 8888887753
Done!