Query 020609
Match_columns 323
No_of_seqs 40 out of 42
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00200 WD40 WD40 domain, foun 98.0 0.0016 3.5E-08 52.6 18.4 196 96-313 10-212 (289)
2 TIGR03866 PQQ_ABC_repeats PQQ- 97.7 0.0067 1.5E-07 51.9 17.3 186 108-313 4-192 (300)
3 cd00200 WD40 WD40 domain, foun 97.5 0.012 2.6E-07 47.6 16.0 185 107-313 65-254 (289)
4 TIGR03866 PQQ_ABC_repeats PQQ- 97.4 0.03 6.4E-07 48.0 18.0 179 113-312 93-283 (300)
5 PLN00181 protein SPA1-RELATED; 97.1 0.055 1.2E-06 56.5 19.1 186 114-311 457-651 (793)
6 PTZ00420 coronin; Provisional 96.0 0.73 1.6E-05 48.2 18.8 178 116-309 55-249 (568)
7 PTZ00421 coronin; Provisional 95.8 0.63 1.4E-05 47.4 17.2 162 134-311 73-248 (493)
8 PLN00181 protein SPA1-RELATED; 95.7 0.77 1.7E-05 48.2 18.0 195 95-310 532-740 (793)
9 KOG0274 Cdc4 and related F-box 95.7 0.22 4.8E-06 51.5 13.8 169 118-314 314-488 (537)
10 KOG0266 WD40 repeat-containing 95.6 0.49 1.1E-05 46.9 15.3 187 105-313 171-369 (456)
11 KOG1446 Histone H3 (Lys4) meth 95.3 1.8 3.9E-05 42.9 17.6 177 118-318 83-272 (311)
12 PTZ00420 coronin; Provisional 94.9 4.5 9.8E-05 42.5 20.2 201 96-316 75-301 (568)
13 PTZ00421 coronin; Provisional 94.8 1.5 3.3E-05 44.7 16.4 155 96-273 126-298 (493)
14 KOG0274 Cdc4 and related F-box 94.4 0.31 6.7E-06 50.5 10.3 156 95-273 331-490 (537)
15 KOG0289 mRNA splicing factor [ 94.1 0.54 1.2E-05 48.6 11.1 190 99-311 225-422 (506)
16 KOG0272 U4/U6 small nuclear ri 93.3 0.71 1.5E-05 47.5 10.3 161 105-273 187-426 (459)
17 KOG1446 Histone H3 (Lys4) meth 93.1 1.1 2.3E-05 44.4 10.8 115 195-313 17-135 (311)
18 KOG0295 WD40 repeat-containing 92.2 4.5 9.8E-05 41.3 14.1 201 94-315 107-371 (406)
19 KOG0279 G protein beta subunit 91.1 14 0.00029 36.9 15.7 194 98-314 66-268 (315)
20 KOG0266 WD40 repeat-containing 91.0 1.2 2.7E-05 44.1 8.9 111 203-317 169-285 (456)
21 KOG0291 WD40-repeat-containing 89.7 3.2 7E-05 45.7 11.1 108 197-310 385-510 (893)
22 KOG0316 Conserved WD40 repeat- 88.5 5.4 0.00012 39.2 10.7 174 116-313 82-262 (307)
23 KOG0295 WD40 repeat-containing 86.6 17 0.00037 37.3 13.3 105 204-312 205-326 (406)
24 KOG0319 WD40-repeat-containing 85.8 4.6 0.0001 44.1 9.4 197 106-313 337-582 (775)
25 KOG1036 Mitotic spindle checkp 84.9 15 0.00032 36.8 11.7 54 130-189 7-60 (323)
26 KOG0281 Beta-TrCP (transducin 83.8 1.1 2.3E-05 45.9 3.5 89 212-311 214-308 (499)
27 PF15065 NCU-G1: Lysosomal tra 82.8 23 0.00049 35.6 12.2 88 134-226 10-102 (350)
28 PF08662 eIF2A: Eukaryotic tra 82.5 24 0.00051 31.3 11.1 119 198-320 65-191 (194)
29 KOG1272 WD40-repeat-containing 82.3 3.5 7.7E-05 43.2 6.6 151 108-263 144-364 (545)
30 COG2319 FOG: WD40 repeat [Gene 81.6 30 0.00066 29.0 18.0 177 114-311 177-362 (466)
31 PF13360 PQQ_2: PQQ-like domai 78.6 41 0.00089 28.7 17.7 190 97-313 28-235 (238)
32 KOG0285 Pleiotropic regulator 78.3 12 0.00026 38.6 8.6 115 189-315 148-272 (460)
33 PRK15095 FKBP-type peptidyl-pr 76.2 3.5 7.5E-05 36.2 3.8 59 226-285 77-136 (156)
34 KOG0281 Beta-TrCP (transducin 75.5 13 0.00028 38.3 8.1 116 194-314 236-394 (499)
35 PF08662 eIF2A: Eukaryotic tra 75.0 60 0.0013 28.8 13.8 135 123-273 46-186 (194)
36 PRK11028 6-phosphogluconolacto 73.7 75 0.0016 29.3 15.5 114 193-309 80-206 (330)
37 PRK11138 outer membrane biogen 72.8 92 0.002 29.9 14.8 187 102-312 66-278 (394)
38 KOG0275 Conserved WD40 repeat- 70.2 4.9 0.00011 41.0 3.7 192 97-313 265-472 (508)
39 PRK10737 FKBP-type peptidyl-pr 69.9 4.4 9.4E-05 37.4 3.1 60 224-285 72-132 (196)
40 KOG0284 Polyadenylation factor 69.4 25 0.00055 36.6 8.5 179 109-308 112-294 (464)
41 KOG2055 WD40 repeat protein [G 69.1 16 0.00034 38.5 7.1 106 204-313 268-379 (514)
42 KOG0643 Translation initiation 68.7 96 0.0021 31.2 12.0 107 205-314 65-184 (327)
43 KOG0282 mRNA splicing factor [ 68.6 11 0.00023 39.7 5.8 119 190-313 206-335 (503)
44 PF07569 Hira: TUP1-like enhan 68.5 9.3 0.0002 35.1 4.9 66 88-155 5-85 (219)
45 KOG0649 WD40 repeat protein [G 67.8 63 0.0014 32.2 10.5 187 97-307 64-273 (325)
46 TIGR03300 assembly_YfgL outer 67.0 1.1E+02 0.0025 28.7 14.7 188 102-313 62-264 (377)
47 KOG0647 mRNA export protein (c 64.6 37 0.00081 34.3 8.4 111 198-313 33-150 (347)
48 KOG0283 WD40 repeat-containing 62.3 45 0.00097 36.7 9.1 119 191-317 405-541 (712)
49 KOG0319 WD40-repeat-containing 59.5 22 0.00048 39.2 6.3 74 196-273 509-585 (775)
50 PF13360 PQQ_2: PQQ-like domai 56.8 1.3E+02 0.0027 25.8 12.1 93 213-312 44-144 (238)
51 KOG0279 G protein beta subunit 55.7 1.8E+02 0.0038 29.4 11.2 124 136-277 148-274 (315)
52 KOG0288 WD40 repeat protein Ti 55.0 16 0.00035 37.9 4.2 110 197-313 224-335 (459)
53 PF04435 SPK: Domain of unknow 54.9 14 0.00031 29.4 3.1 26 192-218 83-108 (109)
54 TIGR02658 TTQ_MADH_Hv methylam 54.6 1.2E+02 0.0027 30.2 10.2 77 194-273 48-144 (352)
55 COG1047 SlpA FKBP-type peptidy 54.3 11 0.00025 34.5 2.8 61 222-284 71-132 (174)
56 smart00306 HintN Hint (Hedgeho 54.3 80 0.0017 23.7 7.1 48 205-252 26-79 (100)
57 PF07569 Hira: TUP1-like enhan 54.1 66 0.0014 29.5 7.7 47 182-231 1-48 (219)
58 KOG0315 G-protein beta subunit 54.1 1.2E+02 0.0026 30.3 9.8 103 204-312 9-117 (311)
59 KOG0772 Uncharacterized conser 53.5 1E+02 0.0023 33.3 9.8 158 131-311 209-397 (641)
60 COG2319 FOG: WD40 repeat [Gene 53.2 1.4E+02 0.003 25.1 11.0 109 198-312 161-275 (466)
61 COG4260 Membrane protease subu 52.5 13 0.00027 37.3 2.9 86 203-294 54-165 (345)
62 KOG0273 Beta-transducin family 51.6 77 0.0017 33.7 8.5 111 199-316 366-490 (524)
63 PRK11138 outer membrane biogen 51.3 2.3E+02 0.005 27.2 17.6 181 103-314 158-359 (394)
64 TIGR02658 TTQ_MADH_Hv methylam 50.4 1.8E+02 0.0038 29.2 10.5 79 194-274 246-339 (352)
65 KOG1539 WD repeat protein [Gen 50.0 52 0.0011 37.0 7.3 108 198-315 499-613 (910)
66 KOG0313 Microtubule binding pr 47.0 1.8E+02 0.0039 30.3 10.1 107 198-311 266-379 (423)
67 KOG1539 WD repeat protein [Gen 46.9 1.6E+02 0.0034 33.4 10.2 114 190-317 163-284 (910)
68 KOG2110 Uncharacterized conser 46.7 1.1E+02 0.0024 31.6 8.5 58 214-273 152-212 (391)
69 KOG0265 U5 snRNP-specific prot 46.6 1.4E+02 0.0031 30.2 9.1 110 192-316 44-171 (338)
70 KOG0310 Conserved WD40 repeat- 44.6 3.3E+02 0.0071 29.0 11.7 108 197-310 115-227 (487)
71 KOG0277 Peroxisomal targeting 43.5 1.6E+02 0.0034 29.6 8.7 144 112-271 124-271 (311)
72 KOG0292 Vesicle coat complex C 43.4 49 0.0011 37.8 5.9 75 199-316 46-131 (1202)
73 KOG0265 U5 snRNP-specific prot 43.1 75 0.0016 32.1 6.6 141 134-309 88-247 (338)
74 KOG0278 Serine/threonine kinas 42.6 48 0.001 33.1 5.2 113 197-322 105-227 (334)
75 KOG1274 WD40 repeat protein [G 42.1 85 0.0018 35.6 7.4 155 139-314 99-268 (933)
76 KOG0306 WD40-repeat-containing 41.1 78 0.0017 35.5 6.9 45 200-244 379-423 (888)
77 KOG0305 Anaphase promoting com 40.5 3.6E+02 0.0079 28.5 11.4 178 105-310 229-463 (484)
78 KOG0315 G-protein beta subunit 40.1 2E+02 0.0044 28.8 8.9 159 96-271 125-294 (311)
79 PF01436 NHL: NHL repeat; Int 39.4 63 0.0014 20.6 3.7 28 192-220 1-28 (28)
80 COG3919 Predicted ATP-grasp en 39.3 25 0.00055 35.7 2.8 28 190-223 258-285 (415)
81 KOG0303 Actin-binding protein 39.1 2.8E+02 0.006 29.3 10.1 125 104-259 143-280 (472)
82 KOG0303 Actin-binding protein 38.9 3.2E+02 0.007 28.9 10.5 131 176-315 66-210 (472)
83 TIGR01445 intein_Nterm intein 38.5 73 0.0016 23.7 4.6 32 217-248 49-80 (81)
84 KOG4547 WD40 repeat-containing 38.5 95 0.0021 33.3 6.9 91 193-288 100-195 (541)
85 PF00780 CNH: CNH domain; Int 38.1 2.9E+02 0.0064 24.6 10.4 109 194-315 140-262 (275)
86 KOG0264 Nucleosome remodeling 36.7 61 0.0013 33.7 5.0 111 197-310 277-406 (422)
87 KOG0296 Angio-associated migra 35.5 1.7E+02 0.0037 30.3 7.9 113 199-312 197-360 (399)
88 KOG0290 Conserved WD40 repeat- 34.8 4E+02 0.0087 27.3 10.2 107 199-311 157-277 (364)
89 PF14269 Arylsulfotran_2: Aryl 33.3 2.2E+02 0.0049 27.4 8.1 52 223-274 32-113 (299)
90 TIGR02781 VirB9 P-type conjuga 33.2 3.6E+02 0.0079 25.3 9.2 69 206-276 31-108 (243)
91 KOG0264 Nucleosome remodeling 33.1 1.3E+02 0.0028 31.5 6.7 118 94-226 225-350 (422)
92 KOG0277 Peroxisomal targeting 33.1 2.1E+02 0.0047 28.7 7.9 26 198-223 110-135 (311)
93 KOG1354 Serine/threonine prote 32.8 66 0.0014 33.3 4.6 73 198-274 219-311 (433)
94 KOG4378 Nuclear protein COP1 [ 32.4 3.4E+02 0.0073 29.7 9.7 164 133-313 33-244 (673)
95 KOG0316 Conserved WD40 repeat- 32.0 2.3E+02 0.005 28.3 7.9 107 203-313 27-136 (307)
96 KOG2111 Uncharacterized conser 31.5 5.9E+02 0.013 26.1 14.8 157 94-271 93-262 (346)
97 KOG0273 Beta-transducin family 31.0 4.9E+02 0.011 28.0 10.5 107 198-308 415-523 (524)
98 KOG1007 WD repeat protein TSSC 30.7 36 0.00078 34.4 2.3 36 202-240 183-218 (370)
99 PF04841 Vps16_N: Vps16, N-ter 30.2 1.9E+02 0.0042 28.8 7.3 90 213-308 9-109 (410)
100 TIGR03300 assembly_YfgL outer 29.6 4.8E+02 0.01 24.6 16.3 93 213-313 249-343 (377)
101 KOG1408 WD40 repeat protein [F 29.5 58 0.0013 36.6 3.8 29 200-229 332-367 (1080)
102 KOG0310 Conserved WD40 repeat- 28.9 7.5E+02 0.016 26.5 12.5 182 107-313 82-273 (487)
103 COG4568 Rof Transcriptional an 28.8 70 0.0015 26.6 3.3 55 256-321 23-77 (84)
104 PRK01742 tolB translocation pr 26.8 6.2E+02 0.013 24.9 10.7 102 204-308 214-322 (429)
105 KOG0300 WD40 repeat-containing 26.0 1.7E+02 0.0037 30.3 6.1 139 117-281 296-439 (481)
106 KOG0640 mRNA cleavage stimulat 25.7 2.2E+02 0.0047 29.5 6.7 99 104-222 227-334 (430)
107 PF15492 Nbas_N: Neuroblastoma 25.7 2.8E+02 0.006 27.6 7.3 62 156-235 23-84 (282)
108 PF04053 Coatomer_WDAD: Coatom 25.6 1.2E+02 0.0026 31.1 5.0 72 74-155 92-163 (443)
109 PRK11028 6-phosphogluconolacto 25.6 5.1E+02 0.011 23.8 8.7 76 194-269 229-310 (330)
110 KOG0267 Microtubule severing p 25.5 1.1E+02 0.0024 34.1 5.0 169 125-319 58-237 (825)
111 KOG0269 WD40 repeat-containing 25.2 2.7E+02 0.0058 31.4 7.8 104 197-312 138-254 (839)
112 PF11763 DIPSY: Cell-wall adhe 24.0 5.2E+02 0.011 23.0 9.4 70 196-274 29-100 (123)
113 PF00400 WD40: WD domain, G-be 23.6 1.9E+02 0.004 18.1 4.0 22 199-221 18-39 (39)
114 KOG0302 Ribosome Assembly prot 23.6 5.2E+02 0.011 27.2 9.0 101 203-308 268-378 (440)
115 PF00780 CNH: CNH domain; Int 23.1 5.4E+02 0.012 22.9 10.3 95 213-316 54-173 (275)
116 KOG0641 WD40 repeat protein [G 22.8 3.4E+02 0.0073 27.1 7.2 96 208-309 197-304 (350)
117 KOG0263 Transcription initiati 22.5 3E+02 0.0066 30.6 7.5 18 296-313 595-612 (707)
118 PF09465 LBR_tudor: Lamin-B re 22.5 58 0.0013 25.1 1.6 30 188-219 10-39 (55)
119 COG4573 GatZ Predicted tagatos 22.2 36 0.00078 35.0 0.6 21 190-213 221-241 (426)
120 PF00560 LRR_1: Leucine Rich R 22.0 70 0.0015 19.2 1.7 18 301-318 1-18 (22)
121 PRK05561 DNA topoisomerase IV 22.0 8.1E+02 0.018 27.1 10.6 115 100-226 502-621 (742)
122 PLN00145 tyrosine/nicotianamin 22.0 44 0.00096 32.9 1.2 12 1-12 1-12 (430)
123 PLN02919 haloacid dehalogenase 21.8 1E+03 0.023 27.2 11.7 129 191-323 738-903 (1057)
124 KOG2919 Guanine nucleotide-bin 21.8 4.4E+02 0.0096 27.3 8.0 141 73-226 181-330 (406)
125 KOG0291 WD40-repeat-containing 21.5 3.1E+02 0.0067 31.1 7.4 49 210-259 30-82 (893)
126 KOG0321 WD40 repeat-containing 21.4 1.6E+02 0.0034 32.6 5.1 127 96-232 101-257 (720)
127 cd08984 GH43_5 Glycosyl hydrol 21.1 1.7E+02 0.0036 27.3 4.7 48 191-247 236-291 (294)
128 KOG0300 WD40 repeat-containing 20.7 2.4E+02 0.0052 29.3 5.9 20 204-223 325-344 (481)
129 cd01205 WASP WASP-type EVH1 do 20.4 1.6E+02 0.0036 25.0 4.1 32 243-274 29-60 (105)
No 1
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.03 E-value=0.0016 Score=52.60 Aligned_cols=196 Identities=18% Similarity=0.306 Sum_probs=120.8
Q ss_pred cceeEEeecc--chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 96 S~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
.+|..+-... +++++-...|....|+..+++.+..+... ...|.++-+...++.+++.+. |. .++...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---~~--~i~i~~---- 79 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGTYLASGSS---DK--TIRLWD---- 79 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCCEEEEEcC---CC--eEEEEE----
Confidence 4454444443 56666667899999999988876666543 444566666666666666442 21 222222
Q ss_pred hhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEE
Q 020609 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIF 250 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~ 250 (323)
+..++.- .-|.. .-..+-.+.|+.. +++++....++..++||+.+...++.+.. ..+..+.++| +.+++..
T Consensus 80 -~~~~~~~---~~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 80 -LETGECV---RTLTG-HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred -cCcccce---EEEec-cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence 2222110 01110 0012233556554 56666666799999999999998888873 3589999998 5554443
Q ss_pred ecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccc--eeEEEecCCceeEEecccccee
Q 020609 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 251 q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~E--kLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
. ..+ -+.++++.+++.+..+.. | ...+.-+..... .|++--.+..+.+||+.+.+..
T Consensus 154 ~-~~~--~i~i~d~~~~~~~~~~~~--~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 154 S-QDG--TIKLWDLRTGKCVATLTG--H-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred c-CCC--cEEEEEccccccceeEec--C-ccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 3 233 367899999998887762 2 334443443333 7888888999999999875544
No 2
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.67 E-value=0.0067 Score=51.88 Aligned_cols=186 Identities=11% Similarity=0.155 Sum_probs=109.0
Q ss_pred hhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcce
Q 020609 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (323)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LF 187 (323)
++.-...|...+||..|++.+..++... -++++-++.....+.+++ . .++ . .+..+. ..|+. ...+
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~~-~-~~~--~--v~~~d~---~~~~~---~~~~ 69 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDGKLLYVCA-S-DSD--T--IQVIDL---ATGEV---IGTL 69 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCC--CCCceEECCCCCEEEEEE-C-CCC--e--EEEEEC---CCCcE---EEec
Confidence 3344567888999999999888887532 357777777665543322 1 121 1 222221 11221 0011
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEc-CCEEEEEEecCCCeeeEEEEEee
Q 020609 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 188 e~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIe 265 (323)
.. -..|..+-|+.....+.+.+..++..++||+++-+.+..+. +.....+.++ +|-++++.....+. +.+++..
T Consensus 70 ~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~--~~~~d~~ 145 (300)
T TIGR03866 70 PS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNM--AHFIDTK 145 (300)
T ss_pred cC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCe--EEEEeCC
Confidence 11 12255667776666666667778999999999988888876 3456778887 46565555444333 3446888
Q ss_pred cCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEecccccee
Q 020609 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDESNSGCL 313 (323)
Q Consensus 266 dG~~l~~~~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~l~ 313 (323)
+++.+...... ....-+.|- .-+.+|++- +.+..+.+||+.+.++.
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 146 TYEIVDNVLVD-QRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CCeEEEEEEcC-CCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 88776654311 111122321 224456554 45778999999987653
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.53 E-value=0.012 Score=47.60 Aligned_cols=185 Identities=17% Similarity=0.315 Sum_probs=111.5
Q ss_pred hhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcc
Q 020609 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~L 186 (323)
.+++....|....|+..+++.+..+. .++..|.++-++..+. ++.++. .|. .+....+ ..+++ ...
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~--~~~--~i~~~~~-----~~~~~---~~~ 130 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGR-ILSSSS--RDK--TIKVWDV-----ETGKC---LTT 130 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCC-EEEEec--CCC--eEEEEEC-----CCcEE---EEE
Confidence 67777779999999999888777776 4445678888887644 444322 122 2332222 11111 001
Q ss_pred eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc--ceeeEEEcCC--EEEEEEecCCCeeeEEEE
Q 020609 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPG--IMLLIFTKASGHVPLKIL 262 (323)
Q Consensus 187 Fe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde--~VqEIkIS~G--imll~~q~~~~~iPlkIl 262 (323)
|. ..-..+--+.|++. ++.++....++..++||+++-+.+..+... .+..+.++|. .++.... .+ -+.++
T Consensus 131 ~~-~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~--~i~i~ 204 (289)
T cd00200 131 LR-GHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DG--TIKLW 204 (289)
T ss_pred ec-cCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC--CC--cEEEE
Confidence 11 11112345667766 455555556999999999988776666543 5888888876 3433322 33 36789
Q ss_pred EeecCceeeeeeeccccCCcchhhhhccceeEEEec-CCceeEEecccccee
Q 020609 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDESNSGCL 313 (323)
Q Consensus 263 sIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE-~~~LqI~Dl~~~~l~ 313 (323)
++.+++.+..+...-..-..+.|... .++++--. +..+.+||+.+.+..
T Consensus 205 d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 205 DLSTGKCLGTLRGHENGVNSVAFSPD--GYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred ECCCCceecchhhcCCceEEEEEcCC--CcEEEEEcCCCcEEEEEcCCceeE
Confidence 99999988877411111222344333 45555554 999999999875543
No 4
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.42 E-value=0.03 Score=47.97 Aligned_cols=179 Identities=12% Similarity=0.141 Sum_probs=106.7
Q ss_pred ccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceee-cc
Q 020609 113 QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ES 191 (323)
Q Consensus 113 ~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~-~~ 191 (323)
..|...+||..+++.+..+... ..++++-++...+.+.+.+. +. +. .... +...++ +... ..
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~---~~-~~--~~~~---d~~~~~------~~~~~~~ 155 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSE---TT-NM--AHFI---DTKTYE------IVDNVLV 155 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEec---CC-Ce--EEEE---eCCCCe------EEEEEEc
Confidence 4578888898888877777532 22467777776665554221 11 10 0111 111111 1111 11
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc---------ceeeEEEcC-CEEEEEEecCCCeeeEEE
Q 020609 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---------NVQEIKISP-GIMLLIFTKASGHVPLKI 261 (323)
Q Consensus 192 L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde---------~VqEIkIS~-Gimll~~q~~~~~iPlkI 261 (323)
-..|..+.|+.....+++-...++..++||+++-+.+..+..+ ....|.++| |-++++.....+. +.+
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~--i~v 233 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR--VAV 233 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe--EEE
Confidence 2357889998766666554556899999999998887766421 124577774 5554444344444 578
Q ss_pred EEeecCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEeccccce
Q 020609 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDESNSGC 312 (323)
Q Consensus 262 lsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~l 312 (323)
+++++|+.+..+..- +.-..+.| -+-+++|++= +.+..|.|||+.+.++
T Consensus 234 ~d~~~~~~~~~~~~~-~~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 234 VDAKTYEVLDYLLVG-QRVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EECCCCcEEEEEEeC-CCcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 999999988654321 11222332 2456677775 5678899999999986
No 5
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.08 E-value=0.055 Score=56.55 Aligned_cols=186 Identities=16% Similarity=0.222 Sum_probs=110.7
Q ss_pred cccceeeecccccEEEEEeCC----CCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhh-hhCCCCCCCccee
Q 020609 114 SGVCAAFCRETNQRICFLNVT----ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFE 188 (323)
Q Consensus 114 sG~c~af~r~tn~~iC~LN~s----~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i-~~Gk~~~g~~LFe 188 (323)
+|+|...+..+-+....++.+ +...|.++=|+...+-+++.+ ++ ..+ +.-+++.. ..++ +...|..+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg----~D-~~I--~iwd~~~~~~~~~-~~~~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAG----VN-KKI--KIFECESIIKDGR-DIHYPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEe----CC-CEE--EEEECCccccccc-ccccceEE
Confidence 677877776655555555543 677899999998777666644 22 122 22222211 1111 11112211
Q ss_pred ecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC--CEEEEEEecCCCeeeEEEEEe
Q 020609 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKILSI 264 (323)
Q Consensus 189 ~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~--Gimll~~q~~~~~iPlkIlsI 264 (323)
-..-.....+-|+...+..++-...|+..++||+.+...+-.+. ...|..+.++| |-+|+.- ...++ ++|.++
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg-s~Dg~--v~iWd~ 605 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG-SDDGS--VKLWSI 605 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE-cCCCE--EEEEEC
Confidence 11111122344554456667667779999999999988776664 35688888874 4444333 22333 789999
Q ss_pred ecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccc
Q 020609 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 265 edG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
.+|+.++.+... ..-.-+.|...-+.+|..--.+..+++||+++..
T Consensus 606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999998877531 1112234433346678888899999999998764
No 6
>PTZ00420 coronin; Provisional
Probab=95.98 E-value=0.73 Score=48.20 Aligned_cols=178 Identities=16% Similarity=0.238 Sum_probs=100.6
Q ss_pred cceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCC--CC-CCcc--eeec
Q 020609 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--DA-GFAL--FESE 190 (323)
Q Consensus 116 ~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~--~~-g~~L--Fe~~ 190 (323)
+...++..+...++.+. ++..-|.++=++..++.++. | ++++ ..++.--+ ..+.. .. ..|+ +..
T Consensus 55 vI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLA-S--gS~D-gtIrIWDi-----~t~~~~~~~i~~p~~~L~g- 123 (568)
T PTZ00420 55 AIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILA-S--GSED-LTIRVWEI-----PHNDESVKEIKDPQCILKG- 123 (568)
T ss_pred EEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEE-E--EeCC-CeEEEEEC-----CCCCccccccccceEEeec-
Confidence 44456666666666665 45566788877876555443 1 2333 23333322 21110 00 0011 110
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCc
Q 020609 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT 268 (323)
Q Consensus 191 ~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~ 268 (323)
--..-..+.|...+..+++-...|+..++||+++-+.++++.. ..|..+.++ +|-+|+.-- .... ++|+++.+|+
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s-~D~~--IrIwD~Rsg~ 200 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC-VGKH--MHIIDPRKQE 200 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe-cCCE--EEEEECCCCc
Confidence 1122345678776666766556799999999999998888753 457777777 465554432 2333 7999999999
Q ss_pred eeeeeeeccccCC---cchhhhhc---cceeEEEecC----CceeEEeccc
Q 020609 269 VLKSFNHLLHRNK---KVDFIEQF---NEKLLVKQEN----ENLQILDESN 309 (323)
Q Consensus 269 ~l~~~~~~L~~sk---~iqFiE~f---~EkLLIKQE~----~~LqI~Dl~~ 309 (323)
.+..+. -|... ..-++..| +.+|+.=-.+ ..++|||+++
T Consensus 201 ~i~tl~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 201 IASSFH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEEe--cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 998765 24322 11122222 2355553322 2699999995
No 7
>PTZ00421 coronin; Provisional
Probab=95.82 E-value=0.63 Score=47.44 Aligned_cols=162 Identities=16% Similarity=0.260 Sum_probs=95.7
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCC--CCCCccee-ecccCCCCeEEecCCCceEEEE
Q 020609 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--DAGFALFE-SESLKWPGFVEFDDVNGKVLTY 210 (323)
Q Consensus 134 s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~--~~g~~LFe-~~~L~~PgFVEFDdvN~kilty 210 (323)
++..-|.++=++..++.++. .++++ ..++.--++ .+.. +...++.. ..--..-..+.|....+.+|+-
T Consensus 73 GH~~~V~~v~fsP~d~~~La---SgS~D-gtIkIWdi~-----~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLF---TASED-GTIMGWGIP-----EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEE---EEeCC-CEEEEEecC-----CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 56677888888885444433 12344 233333322 2211 01112221 1112334568888776667777
Q ss_pred ecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCC---cch
Q 020609 211 SAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK---KVD 284 (323)
Q Consensus 211 ~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk---~iq 284 (323)
...|+..++||+.+-+.+..+. ...|..+..++ |-+|+.-- .... ++|+|+.+|+.+..+.. |... .+.
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs-~Dg~--IrIwD~rsg~~v~tl~~--H~~~~~~~~~ 218 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS-KDKK--LNIIDPRDGTIVSSVEA--HASAKSQRCL 218 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec-CCCE--EEEEECCCCcEEEEEec--CCCCcceEEE
Confidence 7789999999999999888886 45688888884 54444332 3333 68999999999887652 3222 222
Q ss_pred hhhhccceeEE-----EecCCceeEEeccccc
Q 020609 285 FIEQFNEKLLV-----KQENENLQILDESNSG 311 (323)
Q Consensus 285 FiE~f~EkLLI-----KQE~~~LqI~Dl~~~~ 311 (323)
|.- ...+++ +-.+..+++||+++..
T Consensus 219 w~~--~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 219 WAK--RKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EcC--CCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 322 223333 2346789999998754
No 8
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.75 E-value=0.77 Score=48.20 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=117.0
Q ss_pred ccceeEEeec---cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeee
Q 020609 95 RSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 95 RS~V~EIv~a---~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (323)
.++|..+... ..+++.-...|....||..+++.+..+.. +..-|.++-++..+.+++... ..|. .+ +.-
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sg--s~Dg--~v--~iW- 603 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASG--SDDG--SV--KLW- 603 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEE--cCCC--EE--EEE-
Confidence 4555555543 34677777789999999999998888765 445578888876555544411 2232 22 222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEec--ccceeeEEEcCCEEEE
Q 020609 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIKISPGIMLL 248 (323)
Q Consensus 172 i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs-~LYsIs--de~VqEIkIS~Gimll 248 (323)
+++.|+. +.+-..-...-.+.|...+|..++....|+..++||+++.. .+..+. ...|..+...+|-.++
T Consensus 604 --d~~~~~~-----~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lv 676 (793)
T PLN00181 604 --SINQGVS-----IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV 676 (793)
T ss_pred --ECCCCcE-----EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEE
Confidence 2222221 11111111123456666788999989999999999999876 455554 3467788887776544
Q ss_pred EEecCCCeeeEEEEEeecC------ceeeeeeeccccCCcchhh--hhccceeEEEecCCceeEEecccc
Q 020609 249 IFTKASGHVPLKILSIEDG------TVLKSFNHLLHRNKKVDFI--EQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG------~~l~~~~~~L~~sk~iqFi--E~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
.. ...+. ++|.++.++ +.+..+. .+...+.++ ..-+.+|..==++..+.|||....
T Consensus 677 s~-s~D~~--ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 677 SS-STDNT--LKLWDLSMSISGINETPLHSFM---GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EE-ECCCE--EEEEeCCCCccccCCcceEEEc---CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 43 23333 788888753 4455443 122332222 222456666668999999997543
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.74 E-value=0.22 Score=51.50 Aligned_cols=169 Identities=16% Similarity=0.236 Sum_probs=107.5
Q ss_pred eeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCe
Q 020609 118 AAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF 197 (323)
Q Consensus 118 ~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgF 197 (323)
.+|+-.|++.+=.++. +.+.|+++-+| +.+++.+.| + ..|++-.++ .|+. -.+-.- |=|.
T Consensus 314 kVW~v~n~~~l~l~~~-h~~~V~~v~~~---~~~lvsgs~---d---~~v~VW~~~---~~~c------l~sl~g-H~~~ 373 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRG-HTGPVNCVQLD---EPLLVSGSY---D---GTVKVWDPR---TGKC------LKSLSG-HTGR 373 (537)
T ss_pred EEEeccCcceEEEecc-ccccEEEEEec---CCEEEEEec---C---ceEEEEEhh---hcee------eeeecC-Ccce
Confidence 4566666665555555 88888999888 355543333 2 134444333 3332 111111 3333
Q ss_pred EE---ecCCCceEEEEecCCCeEEEEeccCc-EEEE--EecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceee
Q 020609 198 VE---FDDVNGKVLTYSAQDSIYKVFDLKNY-TMLY--SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 198 VE---FDdvN~kilty~aq~~~YrVfdlknY-s~LY--sIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
|. ||.. .+++.- .-|+..|+|||.+- .+++ .....-|.++-..+.++ +-+.+.+ ++|+-|+++|+++.
T Consensus 374 V~sl~~~~~-~~~~Sg-s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~L--vs~~aD~--~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSG-SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFL--VSSSADG--TIKLWDAEEGECLR 447 (537)
T ss_pred EEEEEecCc-ceEEee-eeccceEeecCCchhhhhhhhcCCccccccccccccee--Eeccccc--cEEEeecccCceee
Confidence 32 2332 222222 23688999999999 6554 44445566666555554 5666666 78999999999999
Q ss_pred eeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 272 ~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
.+... +..-+.|+...-|.++.-=.+..+.+||+++.+++.
T Consensus 448 ~~~~~--~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 448 TLEGR--HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred eeccC--CcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 88753 456677777767888999999999999999998764
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.62 E-value=0.49 Score=46.89 Aligned_cols=187 Identities=13% Similarity=0.191 Sum_probs=117.3
Q ss_pred cchhhhhhccccceeeeccccc--EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCC
Q 020609 105 RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~--~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~ 182 (323)
...+++.+..++-..++..+++ .+..+ .++...|+.+=+..... ++ +-+++| ++-|.- +++ .
T Consensus 171 g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~--~l--~s~s~D---~tiriw---d~~-----~ 234 (456)
T KOG0266|consen 171 GRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGS--YL--LSGSDD---KTLRIW---DLK-----D 234 (456)
T ss_pred CCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCc--EE--EEecCC---ceEEEe---ecc-----C
Confidence 4456666688888888888887 66666 78888888888877555 44 234555 333333 221 1
Q ss_pred CCcceeecccCCCCeEE---ecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc--ceeeEEEc-CCEEEEEEecCCCe
Q 020609 183 GFALFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGH 256 (323)
Q Consensus 183 g~~LFe~~~L~~PgFVE---FDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde--~VqEIkIS-~Gimll~~q~~~~~ 256 (323)
+.....+.. .|+.+|- |.+.. ..+.--.-|++.||||+++++++=.++.. -|--+-++ +|..++.... .
T Consensus 235 ~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-d-- 309 (456)
T KOG0266|consen 235 DGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY-D-- 309 (456)
T ss_pred CCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC-C--
Confidence 122334444 7888774 44444 44554556999999999999987777633 23223333 4444444422 2
Q ss_pred eeEEEEEeecCc--eeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEecccccee
Q 020609 257 VPLKILSIEDGT--VLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 257 iPlkIlsIedG~--~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
-=++|.|+++|+ +++.+.-...+. .+-++. +-+.+|+.--+|..+++||+.+..+.
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 236899999999 445444222221 333332 45789999999999999999976554
No 11
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=1.8 Score=42.87 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=119.5
Q ss_pred eeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCe
Q 020609 118 AAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF 197 (323)
Q Consensus 118 ~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgF 197 (323)
+-.|..+|+++=+. +++...|-||=.+..+|+.|..|. | +++.+=|||--+ ..-| -.+..|.-
T Consensus 83 ryLsl~dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~---D-------~tvrLWDlR~~~---cqg~---l~~~~~pi 145 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSL---D-------KTVRLWDLRVKK---CQGL---LNLSGRPI 145 (311)
T ss_pred EEEEeecCceEEEc-CCCCceEEEEEecCCCCeEEeccc---C-------CeEEeeEecCCC---CceE---EecCCCcc
Confidence 34456677766655 577788889999999999888652 1 244445555211 1111 13445566
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcE----EEEEec---ccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCce
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs----~LYsIs---de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~ 269 (323)
.-||+.+= |.|.--.....+.||++.|. .-|.|. ..+..+|+.| +|-.+|+-...+.+ .|++..+|+.
T Consensus 146 ~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~---~~lDAf~G~~ 221 (311)
T KOG1446|consen 146 AAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFI---YLLDAFDGTV 221 (311)
T ss_pred eeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcE---EEEEccCCcE
Confidence 67777644 33333334499999999995 677887 6788999999 67776666665543 5899999999
Q ss_pred eeeeeeccccCCc-chhhh----hccceeEEEecCCceeEEeccccceeeeccc
Q 020609 270 LKSFNHLLHRNKK-VDFIE----QFNEKLLVKQENENLQILDESNSGCLELSRR 318 (323)
Q Consensus 270 l~~~~~~L~~sk~-iqFiE----~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~~~ 318 (323)
+.+|.. +++.. +- ++ .=.+.+|.--+++.|-||++.+.+..-+.+.
T Consensus 222 ~~tfs~--~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 222 KSTFSG--YPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred eeeEee--ccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999984 33333 22 22 2267788888999999999988887666555
No 12
>PTZ00420 coronin; Provisional
Probab=94.89 E-value=4.5 Score=42.51 Aligned_cols=201 Identities=14% Similarity=0.171 Sum_probs=115.5
Q ss_pred cceeEEeec---cchhhhhhccccceeeeccccc--------EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCce
Q 020609 96 SKIIEIVAA---RDIVFALAQSGVCAAFCRETNQ--------RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (323)
Q Consensus 96 S~V~EIv~a---~diI~aL~~sG~c~af~r~tn~--------~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~ 164 (323)
..|..+-+. .++++.-..-|....||..++. .+|.+. .+..-|.++=++.....++. |+ ..|.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLa-Sg-S~Dg--- 148 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMC-SS-GFDS--- 148 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEE-EE-eCCC---
Confidence 456666554 2467777788899999976542 344443 45566888888887665543 21 1232
Q ss_pred eeeeeeehhhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc----ee
Q 020609 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN----VQ 237 (323)
Q Consensus 165 LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~----Vq 237 (323)
.++ +=+++.|+. +++ +.+++ -+.|+. +|..++....|+..++||+++-+.+.++..-. ..
T Consensus 149 -tIr---IWDl~tg~~-----~~~---i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 149 -FVN---IWDIENEKR-----AFQ---INMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred -eEE---EEECCCCcE-----EEE---EecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence 222 224443331 221 11222 345654 57777777789999999999999888775321 11
Q ss_pred eEEE----cCCEEEEE-EecCCCeeeEEEEEeec-CceeeeeeeccccCCcc--hhhhhccceeEEEecCCceeEEeccc
Q 020609 238 EIKI----SPGIMLLI-FTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKV--DFIEQFNEKLLVKQENENLQILDESN 309 (323)
Q Consensus 238 EIkI----S~Gimll~-~q~~~~~iPlkIlsIed-G~~l~~~~~~L~~sk~i--qFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (323)
.+-+ +++-.++. -.-..+.=.++|.++.+ ++++....+.-+ +..+ -+=+..+-.++.=-.|.++++||+..
T Consensus 216 ~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 216 NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 1211 23323222 22222323579999995 677765543222 1111 11144566677777999999999987
Q ss_pred cceeeec
Q 020609 310 SGCLELS 316 (323)
Q Consensus 310 ~~l~ev~ 316 (323)
..+.+++
T Consensus 295 ~~~~~l~ 301 (568)
T PTZ00420 295 GSIRKVN 301 (568)
T ss_pred CcEEeec
Confidence 7665554
No 13
>PTZ00421 coronin; Provisional
Probab=94.84 E-value=1.5 Score=44.68 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=89.8
Q ss_pred cceeEEeec---cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 96 SKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 96 S~V~EIv~a---~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
.+|.-+-+. ..+++.-..-|....||..+++.+..+.. +..-|.++-+|.....|++.| .|. .++..
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs---~Dg----~IrIw-- 195 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTS---KDK----KLNII-- 195 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEec---CCC----EEEEE--
Confidence 345444443 24666667778999999999998877754 445689999998766555533 232 22333
Q ss_pred hhhhhCCCCCCCcceeecccCCC----CeEEecCCCceEEEEe---cCCCeEEEEeccCcEEEEEecccceeeEEEcCCE
Q 020609 173 EYIRRGKPDAGFALFESESLKWP----GFVEFDDVNGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI 245 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~P----gFVEFDdvN~kilty~---aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gi 245 (323)
+++.|+. +.+-. .|. .-+-|...++.++|-. .+++.+++||+++.+..+...+-+ .+.++
T Consensus 196 -D~rsg~~-----v~tl~--~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-----~~~~~ 262 (493)
T PTZ00421 196 -DPRDGTI-----VSSVE--AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD-----QSSAL 262 (493)
T ss_pred -ECCCCcE-----EEEEe--cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC-----CCCce
Confidence 3444432 22111 111 2345556667777743 358999999999987555433211 12233
Q ss_pred EEEEEecCCCee--------eEEEEEeecCceeeee
Q 020609 246 MLLIFTKASGHV--------PLKILSIEDGTVLKSF 273 (323)
Q Consensus 246 mll~~q~~~~~i--------PlkIlsIedG~~l~~~ 273 (323)
++.++.+..+.+ -++++++.+|+.+...
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 333333332222 2678999999876643
No 14
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.37 E-value=0.31 Score=50.49 Aligned_cols=156 Identities=15% Similarity=0.234 Sum_probs=102.3
Q ss_pred ccceeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020609 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (323)
Q Consensus 95 RS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~ 174 (323)
-.+|.++...++++|.-++.|.+.+||..|++.+-.|=. +..-|.|+++..+ .-++.-| |. .++.+-+
T Consensus 331 ~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs---------~D-~~IkvWd 398 (537)
T KOG0274|consen 331 TGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGS---------LD-TTIKVWD 398 (537)
T ss_pred cccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeee---------ec-cceEeec
Confidence 458999999999999999999999999999997666655 8888899999887 3344322 33 4555666
Q ss_pred hhhCCCCCCCcceeecccC-CCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc---ceeeEEEcCCEEEEEE
Q 020609 175 IRRGKPDAGFALFESESLK-WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKISPGIMLLIF 250 (323)
Q Consensus 175 i~~Gk~~~g~~LFe~~~L~-~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde---~VqEIkIS~Gimll~~ 250 (323)
++.++ ...-.|. |++.|-==...++.|.-+..|+..|+||.++++++..++.- .|.-....+..++.
T Consensus 399 l~~~~-------~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~-- 469 (537)
T KOG0274|consen 399 LRTKR-------KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILC-- 469 (537)
T ss_pred CCchh-------hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEE--
Confidence 66552 1111122 22223111234788888888999999999999999999972 34434333222211
Q ss_pred ecCCCeeeEEEEEeecCceeeee
Q 020609 251 TKASGHVPLKILSIEDGTVLKSF 273 (323)
Q Consensus 251 q~~~~~iPlkIlsIedG~~l~~~ 273 (323)
--..+ -++|.++.+|+.....
T Consensus 470 s~~~~--~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 470 SSDDG--SVKLWDLRSGTLIRTL 490 (537)
T ss_pred EecCC--eeEEEecccCchhhhh
Confidence 11122 2345577777777644
No 15
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.06 E-value=0.54 Score=48.64 Aligned_cols=190 Identities=18% Similarity=0.210 Sum_probs=116.6
Q ss_pred eEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhC
Q 020609 99 IEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (323)
Q Consensus 99 ~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~G 178 (323)
..|..+.+.|+..-.---.-.||..+|+.+..+ +++.-.|-++-||+.++.+|+.|+-.-.. .-+.+..
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~-----vws~~~~----- 293 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKDLDTVITASADEIIR-----VWSVPLS----- 293 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccchhheeecCCcceEE-----eeccccc-----
Confidence 345555566666555555567888888876655 45666788999999999999977543111 1111110
Q ss_pred CCCCCCcceeecccCCCCeEEe--cCCCceEEEEecCCCeEEEEeccCcEEEEEeccc----ceeeEEEc-CCEEEEEEe
Q 020609 179 KPDAGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFT 251 (323)
Q Consensus 179 k~~~g~~LFe~~~L~~PgFVEF--DdvN~kilty~aq~~~YrVfdlknYs~LYsIsde----~VqEIkIS-~Gimll~~q 251 (323)
..| +.+..|-+=|-| -.+||.=+..-..|++|-|-|+.+=++|-..+|| ++.-.-+- ||+++....
T Consensus 294 ----s~~---~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 294 ----SEP---TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred ----cCc---cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 000 011111111111 2356777777788999999999999999999986 23333443 555543333
Q ss_pred cCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeE-EEecCCceeEEeccccc
Q 020609 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDESNSG 311 (323)
Q Consensus 252 ~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLL-IKQE~~~LqI~Dl~~~~ 311 (323)
+. + -++|+++-.+..+..|---=.+=+.|+|=| |-|-| +--++..+++||||-.+
T Consensus 367 ~d-~--~vkiwdlks~~~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 367 PD-G--VVKIWDLKSQTNVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred CC-c--eEEEEEcCCccccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhc
Confidence 32 2 369999999987776652122345667766 45554 45577779999998654
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=93.28 E-value=0.71 Score=47.49 Aligned_cols=161 Identities=24% Similarity=0.274 Sum_probs=109.6
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeec-CCCeEEEEEeEec---------CCCceeeeeeee---
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYAS---------DNFSSLRCRSTR--- 171 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk-~NdSlItvSvy~s---------d~fS~LkCr~~~--- 171 (323)
.++|+--.-+|+|.+++..+.+.+|.|---.++|.--.||-. .+.++++.|.-.+ .+...|..+...
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSR 266 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhee
Confidence 467777889999999999999999999999999998899988 5778888764221 111111111100
Q ss_pred --------------------------------------------------------------hhhhhhCCCCCCCcceee
Q 020609 172 --------------------------------------------------------------IEYIRRGKPDAGFALFES 189 (323)
Q Consensus 172 --------------------------------------------------------------i~~i~~Gk~~~g~~LFe~ 189 (323)
+=|+|.|+ ..+|-.
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr----~im~L~ 342 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR----CIMFLA 342 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc----EEEEec
Confidence 00222222 234444
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC--CEEEEEEecCCCeeeEEEEEee
Q 020609 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP--GIMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 190 ~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~--Gimll~~q~~~~~iPlkIlsIe 265 (323)
+-++-==-|+|+ .||--++-..+|++-|||||+-=++||-|++ ..|-++|.+| |-||+..--- .-++|.+=.
T Consensus 343 gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD---~t~kiWs~~ 418 (459)
T KOG0272|consen 343 GHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD---NTVKIWSTR 418 (459)
T ss_pred ccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC---cceeeecCC
Confidence 444433347776 5888888899999999999999999999986 5689999996 7776653222 234555555
Q ss_pred cCceeeee
Q 020609 266 DGTVLKSF 273 (323)
Q Consensus 266 dG~~l~~~ 273 (323)
|+.+++++
T Consensus 419 ~~~~~ksL 426 (459)
T KOG0272|consen 419 TWSPLKSL 426 (459)
T ss_pred Ccccchhh
Confidence 66555544
No 17
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=1.1 Score=44.40 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=90.1
Q ss_pred CCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc--ceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeee
Q 020609 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 195 PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde--~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (323)
+--+||++.-...+| +.+|.+.++||..+=.++=.|..+ .++-++..-.-.-+++-.++.---++.|+++|-+.+.-
T Consensus 17 i~sl~fs~~G~~lit-ss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY 95 (311)
T KOG1446|consen 17 INSLDFSDDGLLLIT-SSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY 95 (311)
T ss_pred eeEEEecCCCCEEEE-ecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE
Confidence 446899987666666 889999999999999999999888 77888888777767777776667899999999999987
Q ss_pred eeeccccCCcchhhh--hccceeEEEecCCceeEEecccccee
Q 020609 273 FNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 273 ~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
|. .+.+.|-.|+ .-+|.-|=--.|+.++.||++.+++.
T Consensus 96 F~---GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 96 FP---GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred cC---CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence 75 2244444433 34566677778999999999988764
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.17 E-value=4.5 Score=41.27 Aligned_cols=201 Identities=17% Similarity=0.251 Sum_probs=124.9
Q ss_pred cccceeEEeec-cchhhhhh-ccccceeeecccccEE------------------------------------------E
Q 020609 94 KRSKIIEIVAA-RDIVFALA-QSGVCAAFCRETNQRI------------------------------------------C 129 (323)
Q Consensus 94 kRS~V~EIv~a-~diI~aL~-~sG~c~af~r~tn~~i------------------------------------------C 129 (323)
-|++|.-+++- ...+++++ ..+.-.+||.+||++. |
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 57777777765 34445555 5677777777777641 2
Q ss_pred EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCCC--ceE
Q 020609 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN--GKV 207 (323)
Q Consensus 130 ~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN--~ki 207 (323)
-.|.++++.|-|+|+=..+|.|...| .|. .|+.-+.+-|.-+- .--.||.+|--=++| |.|
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~s---rD~------------tik~We~~tg~cv~--t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCS---RDN------------TIKAWECDTGYCVK--TFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecc---ccc------------ceeEEecccceeEE--eccCchHhEEEEEecCCeeE
Confidence 34677888999999999998776543 222 12222222221111 112345555544444 789
Q ss_pred EEEecCCCeEEEEeccCcEEEEEecc-cceee-EEEcCC----------------EEEEEEecCCCeeeEEEEEeecCce
Q 020609 208 LTYSAQDSIYKVFDLKNYTMLYSISD-KNVQE-IKISPG----------------IMLLIFTKASGHVPLKILSIEDGTV 269 (323)
Q Consensus 208 lty~aq~~~YrVfdlknYs~LYsIsd-e~VqE-IkIS~G----------------imll~~q~~~~~iPlkIlsIedG~~ 269 (323)
++.+..+-..+||.+.+-++.-++-+ |++-| |.+-|. .++...-+-. -||+.++.||.+
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk---tIk~wdv~tg~c 326 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK---TIKIWDVSTGMC 326 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc---eEEEEeccCCeE
Confidence 99999999999999999965444332 22222 222221 2222222111 369999999999
Q ss_pred eeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 270 l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
|..+.-..-==+.+- +-.-+-||+==-+|+.|++||+.+..|+.+
T Consensus 327 L~tL~ghdnwVr~~a-f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 327 LFTLVGHDNWVRGVA-FSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred EEEEecccceeeeeE-EcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 998863222223333 334577888888999999999999999875
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=91.06 E-value=14 Score=36.89 Aligned_cols=194 Identities=18% Similarity=0.286 Sum_probs=120.0
Q ss_pred eeEEeeccchhhhhhc--cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhh
Q 020609 98 IIEIVAARDIVFALAQ--SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (323)
Q Consensus 98 V~EIv~a~diI~aL~~--sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i 175 (323)
|...+...|==+||+- -|.-+.+|..+|+-.+-+ .++--.|-|+=++.+|..+++-|.- -+|+--.|
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt----- 134 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNT----- 134 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCc-----ceeeeeee-----
Confidence 3344444454555554 488899999999877754 4666778899999999999885532 22322211
Q ss_pred hhCCCCCCCcce--eecc-cCCCCeEEecCCC-ceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEc-CCEEEE
Q 020609 176 RRGKPDAGFALF--ESES-LKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKIS-PGIMLL 248 (323)
Q Consensus 176 ~~Gk~~~g~~LF--e~~~-L~~PgFVEFDdvN-~kilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS-~Gimll 248 (323)
. |.-.+ ..++ -.|=--|-|-+.+ .-++.--..|++.|||||.|.+..=.. ....+--+-+| ||.+ .
T Consensus 135 ~------g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-c 207 (315)
T KOG0279|consen 135 L------GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-C 207 (315)
T ss_pred c------ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCE-E
Confidence 1 00011 1122 4566677787774 344444456999999999998844332 33345567777 4444 4
Q ss_pred EEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
..-+.... +.|.++-.|+.+.++.+..+ =.-+-|.+ |+|-|----+++++|||+-+..+.+
T Consensus 208 asGgkdg~--~~LwdL~~~k~lysl~a~~~-v~sl~fsp--nrywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 208 ASGGKDGE--AMLWDLNEGKNLYSLEAFDI-VNSLCFSP--NRYWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred ecCCCCce--EEEEEccCCceeEeccCCCe-EeeEEecC--CceeEeeccCCceEEEeccchhhhh
Confidence 45444443 45667777777776543221 11122333 6788888889999999999988765
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.04 E-value=1.2 Score=44.10 Aligned_cols=111 Identities=21% Similarity=0.417 Sum_probs=82.8
Q ss_pred CCceEEEEecCCCeEEEEeccCcE--EEEEe--cccceeeEEEcCCEEEEEEecCCCeeeEEEEEe-ecCceeeeee-ec
Q 020609 203 VNGKVLTYSAQDSIYKVFDLKNYT--MLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSI-EDGTVLKSFN-HL 276 (323)
Q Consensus 203 vN~kilty~aq~~~YrVfdlknYs--~LYsI--sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsI-edG~~l~~~~-~~ 276 (323)
.+|+.+++..+++..++|++.+.+ ++..+ ....|-++++||.-=.++ ....=.-++|.++ ++|..++.++ |.
T Consensus 169 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~--s~s~D~tiriwd~~~~~~~~~~l~gH~ 246 (456)
T KOG0266|consen 169 PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLL--SGSDDKTLRIWDLKDDGRNLKTLKGHS 246 (456)
T ss_pred CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEE--EecCCceEEEeeccCCCeEEEEecCCC
Confidence 578889999999999999998888 77777 556688888885543222 2333356799999 7779999886 32
Q ss_pred cccCCcchhhhhccceeEEEecCCceeEEeccccceeeecc
Q 020609 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLELSR 317 (323)
Q Consensus 277 L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~~ 317 (323)
..-.-+.|-.+= +.++-==.++.++|||+.+.++.++=.
T Consensus 247 -~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 247 -TYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred -CceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeee
Confidence 223456677666 677777799999999999988877643
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.71 E-value=3.2 Score=45.65 Aligned_cols=108 Identities=21% Similarity=0.332 Sum_probs=69.0
Q ss_pred eEEecCCCce-----------EEEEecCCCeEEEEeccCcEE--EEEeccccee--eEEEcC-CEEEEEEecCCCeeeEE
Q 020609 197 FVEFDDVNGK-----------VLTYSAQDSIYKVFDLKNYTM--LYSISDKNVQ--EIKISP-GIMLLIFTKASGHVPLK 260 (323)
Q Consensus 197 FVEFDdvN~k-----------ilty~aq~~~YrVfdlknYs~--LYsIsde~Vq--EIkIS~-Gimll~~q~~~~~iPlk 260 (323)
||.|++-+.- ++.-+.=||+.|-|||+.|-. =|..+ +-+| .+-+-| |-+ +..++.++.-+.
T Consensus 385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGel--V~AG~~d~F~If 461 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGEL--VCAGAQDSFEIF 461 (893)
T ss_pred EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCE--EEeeccceEEEE
Confidence 7888886543 333344499999999999983 45554 4444 333332 333 466788999999
Q ss_pred EEEeecCceeeeeeeccccCCcchh--hhhccceeEEEecCCceeEEecccc
Q 020609 261 ILSIEDGTVLKSFNHLLHRNKKVDF--IEQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 261 IlsIedG~~l~~~~~~L~~sk~iqF--iE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
+.|.|||+.|--+. .+-.||-= +-+.++-|.=--=+..++|||+-++
T Consensus 462 vWS~qTGqllDiLs---GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 462 VWSVQTGQLLDILS---GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EEEeecCeeeehhc---CCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 99999999987554 22333320 2233333333334667899999888
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.51 E-value=5.4 Score=39.20 Aligned_cols=174 Identities=20% Similarity=0.304 Sum_probs=108.1
Q ss_pred cceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCcee---eeeeeehhhhhhCCCCCCCcceeeccc
Q 020609 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL---RCRSTRIEYIRRGKPDAGFALFESESL 192 (323)
Q Consensus 116 ~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~L---kCr~~~i~~i~~Gk~~~g~~LFe~~~L 192 (323)
.|..||-.|||-+=-+ +.+.-.|-++=||. +|=|++| +|++ +++ -||+-+.+-|+ .|....
T Consensus 82 ~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~S--gsfD-~s~r~wDCRS~s~ePiQ---------ildea~- 145 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVAS--GSFD-SSVRLWDCRSRSFEPIQ---------ILDEAK- 145 (307)
T ss_pred eEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEe--cccc-ceeEEEEcccCCCCccc---------hhhhhc-
Confidence 5778999999944322 37888899999998 5556644 6777 455 47777666554 111100
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceee
Q 020609 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 193 ~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
-|-.-- |+++--+..-.-||+||+|||+.=.+.----..-|.-+.+| +|-.+|.- --.+ .++||+=+||+.|+
T Consensus 146 --D~V~Si-~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~-~l~s--tlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 146 --DGVSSI-DVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLAS-SLDS--TLRLLDKETGKLLK 219 (307)
T ss_pred --CceeEE-EecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEe-eccc--eeeecccchhHHHH
Confidence 011112 34444444455699999999998776655555667777888 34443332 2222 37899999999999
Q ss_pred eeeeccccCCc--chh-hhhccceeEEEecCCceeEEecccccee
Q 020609 272 SFNHLLHRNKK--VDF-IEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 272 ~~~~~L~~sk~--iqF-iE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+.+- |.|.+ +|= +-|-.+-..=--|+.-.-.|||.+..++
T Consensus 220 sYkG--hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 220 SYKG--HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred Hhcc--cccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 8873 33332 220 2233333344458999999999987664
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.56 E-value=17 Score=37.28 Aligned_cols=105 Identities=12% Similarity=0.226 Sum_probs=71.3
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeeee------
Q 020609 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN------ 274 (323)
Q Consensus 204 N~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~------ 274 (323)
+.-|+. +.-|.+||.|+..+=.++|.... |=|.=|++. ||.++. --.+.--+.+....|+++...+.
T Consensus 205 gd~ilS-~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A---s~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 205 GDHILS-CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA---SCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred CCeeee-cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE---ecCCCceEEEEEeccchhhhhhhccccce
Confidence 444544 45688999999999998888753 567888887 777643 23444567888888985544332
Q ss_pred ---eccccCCcchhhhhccc-----eeEEEecCCceeEEeccccce
Q 020609 275 ---HLLHRNKKVDFIEQFNE-----KLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 275 ---~~L~~sk~iqFiE~f~E-----kLLIKQE~~~LqI~Dl~~~~l 312 (323)
..-|-..-.+--|+-++ .|..+-.|..++|||+.+..|
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 11122223333466675 888899999999999987654
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.82 E-value=4.6 Score=44.10 Aligned_cols=197 Identities=23% Similarity=0.289 Sum_probs=125.1
Q ss_pred chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEec-------CCCceee------eeeeeh
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYAS-------DNFSSLR------CRSTRI 172 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~s-------d~fS~Lk------Cr~~~i 172 (323)
+.+++-+.|+--+.|+.-|-. |.|=++++|+|-||---.-++-|++.|=-.| ++++..- |++-++
T Consensus 337 ~~laVATNs~~lr~y~~~~~~--c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSY--CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ceEEEEeCCCceEEEecCCCc--eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 567777888888899665544 9999999999999984444455555441111 2222222 222222
Q ss_pred hhhhhCCCCCCCcceeecc----c---CCCC---------e---------------EEecCCCceEEEEecCCCeEEEEe
Q 020609 173 EYIRRGKPDAGFALFESES----L---KWPG---------F---------------VEFDDVNGKVLTYSAQDSIYKVFD 221 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~----L---~~Pg---------F---------------VEFDdvN~kilty~aq~~~YrVfd 221 (323)
-.+---+ .+.+.|-+++ + ..|+ | |+. ..|.++++--.||.+-|+|+
T Consensus 415 gava~~~--~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai-a~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 415 GAVAGSK--LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI-APNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred ceeeecc--cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe-cCCCceEEecccccceeeec
Confidence 2221111 1123333321 1 1122 1 111 24677888888999999999
Q ss_pred ccCcEEEEEecc--cceeeEEEcCC--EEEEEEecCCCeeeEEEEEeecCceeeeee-eccccCCcchhhhhccceeEEE
Q 020609 222 LKNYTMLYSISD--KNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVK 296 (323)
Q Consensus 222 lknYs~LYsIsd--e~VqEIkIS~G--imll~~q~~~~~iPlkIlsIedG~~l~~~~-~~L~~sk~iqFiE~f~EkLLIK 296 (323)
+.+-..+-.++. ..|=.+++|+. +| ++ .++=.-+||.+|+|+.+++.|. |. -.=.+.+|+- -+++|+=-
T Consensus 492 le~~~l~~vLsGH~RGvw~V~Fs~~dq~l-aT---~SgD~TvKIW~is~fSClkT~eGH~-~aVlra~F~~-~~~qliS~ 565 (775)
T KOG0319|consen 492 LEQLRLLGVLSGHTRGVWCVSFSKNDQLL-AT---CSGDKTVKIWSISTFSCLKTFEGHT-SAVLRASFIR-NGKQLISA 565 (775)
T ss_pred ccCceEEEEeeCCccceEEEEecccccee-Ee---ccCCceEEEEEeccceeeeeecCcc-ceeEeeeeee-CCcEEEec
Confidence 999998888885 56888999976 44 33 3455778999999999999987 32 2233566763 24445444
Q ss_pred ecCCceeEEecccccee
Q 020609 297 QENENLQILDESNSGCL 313 (323)
Q Consensus 297 QE~~~LqI~Dl~~~~l~ 313 (323)
--+.-++|||+-+.+|.
T Consensus 566 ~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNECE 582 (775)
T ss_pred cCCCcEEEEeccchhhh
Confidence 57888999999998875
No 25
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=84.87 E-value=15 Score=36.78 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=37.7
Q ss_pred EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceee
Q 020609 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES 189 (323)
Q Consensus 130 ~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~ 189 (323)
.|+..|.+-|-++=|...++-|++.| =+ .+|.-+.++...+ ++++.-+-||-..
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvss----WD-gslrlYdv~~~~l-~~~~~~~~plL~c 60 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSS----WD-GSLRLYDVPANSL-KLKFKHGAPLLDC 60 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEe----cc-CcEEEEeccchhh-hhheecCCceeee
Confidence 57888999999999985444454433 23 5777788877744 4777777777654
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=83.75 E-value=1.1 Score=45.93 Aligned_cols=89 Identities=15% Similarity=0.351 Sum_probs=58.1
Q ss_pred cCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecC-----CCeeeEEEEEeecCceeeeeeeccccCCcchhh
Q 020609 212 AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKA-----SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (323)
Q Consensus 212 aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~-----~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFi 286 (323)
.-|.+.++||-++|+++|.+..- ++.++-|=+... ++---+.+.|.+||++++...| +..-+==+
T Consensus 214 lrDnTikiWD~n~~~c~~~L~GH-------tGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlih---HceaVLhl 283 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKILTGH-------TGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIH---HCEAVLHL 283 (499)
T ss_pred cccCceEEeccccHHHHHhhhcC-------CCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhh---hcceeEEE
Confidence 34999999999999999998853 122222222211 2233468999999999996542 22222113
Q ss_pred hhccceeEE-EecCCceeEEeccccc
Q 020609 287 EQFNEKLLV-KQENENLQILDESNSG 311 (323)
Q Consensus 287 E~f~EkLLI-KQE~~~LqI~Dl~~~~ 311 (323)
.|++.++| --++.++.+|||-+..
T Consensus 284 -rf~ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 284 -RFSNGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred -EEeCCEEEEecCCceeEEEeccCch
Confidence 35555555 4599999999998764
No 27
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=82.83 E-value=23 Score=35.57 Aligned_cols=88 Identities=15% Similarity=0.283 Sum_probs=67.5
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCC-----CcceeecccCCCCeEEecCCCceEE
Q 020609 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-----FALFESESLKWPGFVEFDDVNGKVL 208 (323)
Q Consensus 134 s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g-----~~LFe~~~L~~PgFVEFDdvN~kil 208 (323)
++..-||-+|=.--.-|++. ++.+.+=+. -.++.+.+..+.+..+ .+...+..+.---.+||||+|.+..
T Consensus 10 g~~dTlHyvWs~~g~Ptvll--~~T~~~~s~---l~VnW~~lls~~~~~ai~v~p~~v~ys~A~vf~kL~EfnD~ndta~ 84 (350)
T PF15065_consen 10 GSNDTLHYVWSSIGAPTVLL--AHTNSPSSA---LNVNWSKLLSPNPSGAITVEPKPVQYSSALVFNKLIEFNDVNDTAN 84 (350)
T ss_pred CCCCeEEEEEecCCCCEEEE--EEcCCCccc---EEeeHHHhcCCCCCCCEEEccCCceEEEeeeeeeheeeeCCCCccc
Confidence 77888999998888889998 555555233 4578888888865444 1234455666778999999999999
Q ss_pred EEecCCCeEEEEeccCcE
Q 020609 209 TYSAQDSIYKVFDLKNYT 226 (323)
Q Consensus 209 ty~aq~~~YrVfdlknYs 226 (323)
.--+....|++.||.+++
T Consensus 85 ~~~~~~~~~~~y~l~~f~ 102 (350)
T PF15065_consen 85 ISTPPGKFYPPYDLSNFS 102 (350)
T ss_pred ccCCCCCceeeeehhhce
Confidence 876788999999999987
No 28
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=82.46 E-value=24 Score=31.29 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=80.3
Q ss_pred EEecCCCceE-EEEecCCCeEEEEeccCcEEEEEecccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeee
Q 020609 198 VEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (323)
Q Consensus 198 VEFDdvN~ki-lty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~ 275 (323)
+.+.+.+.+. +.+...+....+||++ -..++++....+..|+.|| |-+|++.--.+.-=-|.+.|+.+.+.+..+.+
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~ 143 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH 143 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc
Confidence 4455555553 4444556689999997 7889999988899999995 55655543222212378899999999987765
Q ss_pred ccccCCcchhhhhccceeEEE------ecCCceeEEeccccceeeecccce
Q 020609 276 LLHRNKKVDFIEQFNEKLLVK------QENENLQILDESNSGCLELSRRAC 320 (323)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIK------QE~~~LqI~Dl~~~~l~ev~~~~~ 320 (323)
.- ...++| -.-+.+++.= +.+..++||+.--..+.+.+..+|
T Consensus 144 ~~--~t~~~W-sPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l 191 (194)
T PF08662_consen 144 SD--ATDVEW-SPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPFDEL 191 (194)
T ss_pred Cc--EEEEEE-cCCCCEEEEEEeccceeccccEEEEEecCeEeEecchhhh
Confidence 32 334442 2234444432 357889999999888888887665
No 29
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.35 E-value=3.5 Score=43.23 Aligned_cols=151 Identities=21% Similarity=0.343 Sum_probs=92.7
Q ss_pred hhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecC-------CCeEEEEEeEecCCCceeeeeeee-----hh--
Q 020609 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-------NDSLITVSVYASDNFSSLRCRSTR-----IE-- 173 (323)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~-------NdSlItvSvy~sd~fS~LkCr~~~-----i~-- 173 (323)
+++--..|--||||-.|++++|+||.. |-||.+=|=.+ -..... +|..+. .-|+|--.- ++
T Consensus 144 lllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LHneq~~AVAQK~y~y--vYD~~G-tElHClk~~~~v~rLeFL 218 (545)
T KOG1272|consen 144 LLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLHNEQFFAVAQKKYVY--VYDNNG-TELHCLKRHIRVARLEFL 218 (545)
T ss_pred EEecCCccceeeeecccceeeeeeehh--hhhhhhhhhcchHHHHhhhhceEE--EecCCC-cEEeehhhcCchhhhccc
Confidence 344456788999999999999999984 56666533221 122333 677777 778884322 22
Q ss_pred ---hhhhCCCCCCCcceeecc--------------------cCCCCeEEecCCCceEEEEecC-----------------
Q 020609 174 ---YIRRGKPDAGFALFESES--------------------LKWPGFVEFDDVNGKVLTYSAQ----------------- 213 (323)
Q Consensus 174 ---~i~~Gk~~~g~~LFe~~~--------------------L~~PgFVEFDdvN~kilty~aq----------------- 213 (323)
+|..+--++|+.-..+++ --|-+-+-.-..||.|-.++|.
T Consensus 219 PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~s 298 (545)
T KOG1272|consen 219 PYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSS 298 (545)
T ss_pred chhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcce
Confidence 222222233332222211 1122333333444444444443
Q ss_pred ---------------CCeEEEEeccCcEEEEEecc-cceeeEEEcCCEEEEEEecCCCeeeEEEEE
Q 020609 214 ---------------DSIYKVFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILS 263 (323)
Q Consensus 214 ---------------~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~Gimll~~q~~~~~iPlkIls 263 (323)
|...|||||++|..|-++.- -..+..-+|.--||+.-++++-+|--..++
T Consensus 299 iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 299 IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALK 364 (545)
T ss_pred EEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhc
Confidence 88899999999998777765 567888999888888888887666554444
No 30
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=81.60 E-value=30 Score=28.99 Aligned_cols=177 Identities=19% Similarity=0.329 Sum_probs=106.2
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccC
Q 020609 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (323)
Q Consensus 114 sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~ 193 (323)
.|....|+..+++.+..++. +..-|.++-++..+. .+++| .+.+ ..+.+. ++..|+ ........
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~--~~~d-~~i~~w-----d~~~~~------~~~~~~~~ 240 (466)
T COG2319 177 DGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGG-LLIAS--GSSD-GTIRLW-----DLSTGK------LLRSTLSG 240 (466)
T ss_pred CCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcc-eEEEE--ecCC-CcEEEE-----ECCCCc------EEeeecCC
Confidence 79999999988888888887 555667777775555 45544 2333 223322 211111 11111222
Q ss_pred CCCe-E-EecCCCceEEEEecCCCeEEEEeccCcEE-EEEe--cccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecC
Q 020609 194 WPGF-V-EFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 194 ~PgF-V-EFDdvN~kilty~aq~~~YrVfdlknYs~-LYsI--sde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG 267 (323)
++.. + .|...+ ..++-...++.+++||++.... +..+ .++.+..+.+.| +-.++. ...... +++.++.++
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~--~~~~~~~~~ 316 (466)
T COG2319 241 HSDSVVSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSDGT--VRLWDLETG 316 (466)
T ss_pred CCcceeEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCCCc--EEEEEcCCC
Confidence 2222 1 565555 5555667899999999997664 3333 257888888887 444444 333333 666699888
Q ss_pred ceeeeeeecccc--CCcchhhhhccceeEEE-ecCCceeEEeccccc
Q 020609 268 TVLKSFNHLLHR--NKKVDFIEQFNEKLLVK-QENENLQILDESNSG 311 (323)
Q Consensus 268 ~~l~~~~~~L~~--sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~ 311 (323)
..........|. -..+.| ..-++.+.+- +.+..+++|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 317 KLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence 877766522222 244444 3113667777 677888999998876
No 31
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=78.64 E-value=41 Score=28.72 Aligned_cols=190 Identities=13% Similarity=0.105 Sum_probs=102.5
Q ss_pred ceeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhh
Q 020609 97 KIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR 176 (323)
Q Consensus 97 ~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~ 176 (323)
.+...+..+..+++....|.-.++|..||+.+--... ++++--.. --.++.+++++ .++ .+++++ .+
T Consensus 28 ~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~--~~~~~~v~v~~---~~~----~l~~~d---~~ 94 (238)
T PF13360_consen 28 PVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP--VVDGGRVYVGT---SDG----SLYALD---AK 94 (238)
T ss_dssp EEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE--EEETTEEEEEE---TTS----EEEEEE---TT
T ss_pred ccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee--eeccccccccc---cee----eeEecc---cC
Confidence 3434555677888888999999999999999987776 33321111 12234454433 333 333332 23
Q ss_pred hCCCCCCCcceee-cc------cCC-------CCeEEecCCCceEEEEecCCCeEEEEeccCcE----EEEEecccceee
Q 020609 177 RGKPDAGFALFES-ES------LKW-------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSISDKNVQE 238 (323)
Q Consensus 177 ~Gk~~~g~~LFe~-~~------L~~-------PgFVEFDdvN~kilty~aq~~~YrVfdlknYs----~LYsIsde~VqE 238 (323)
.|+. +.+. .. +.. -+.+=+...+|.+.++++.+|.- +|.+..-. .-++........
T Consensus 95 tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~ 168 (238)
T PF13360_consen 95 TGKV-----LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGS 168 (238)
T ss_dssp TSCE-----EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEE
T ss_pred Ccce-----eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccc
Confidence 3332 3331 10 111 22333333466666666665533 45443211 111111122456
Q ss_pred EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 239 IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 239 IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
.-+.+| .+++...... -+.+ ++++|+.+-+.. ++. ..-....-++.|++--++..|.+||+.+.+..
T Consensus 169 ~~~~~~-~v~~~~~~g~--~~~~-d~~tg~~~w~~~--~~~--~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 169 PVISDG-RVYVSSGDGR--VVAV-DLATGEKLWSKP--ISG--IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EECCTT-EEEEECCTSS--EEEE-ETTTTEEEEEEC--SS---ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eEEECC-EEEEEcCCCe--EEEE-ECCCCCEEEEec--CCC--ccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 666677 4444444443 3555 999999775322 222 11123456778888878999999999998764
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=78.34 E-value=12 Score=38.65 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=87.2
Q ss_pred ecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEEEEecCCCeeeEEEEEeec
Q 020609 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (323)
Q Consensus 189 ~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIed 266 (323)
+.-|.|=--|.+|..|.=-.| .+.|++.++||+.+=.+.-.+. -+.|.++++|+-+=.|+.-.-... +|-.|+|+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~t-gs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~--VKCwDLe~ 224 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFAT-GSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ--VKCWDLEY 224 (460)
T ss_pred hhccceEEEEeeCCCceeEEe-cCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe--eEEEechh
Confidence 356677777899999876555 6679999999999999999988 578899999988877776666554 47888888
Q ss_pred Cceeeee--------eeccccCCcchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 267 GTVLKSF--------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 267 G~~l~~~--------~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
-+.+... ++.||++-+ -|+---.++..++||+|++.-.-|
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTld---------vl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLD---------VLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred hhhHHHhccccceeEEEeccccce---------eEEecCCcceEEEeeecccceEEE
Confidence 8777632 445565544 345556899999999999764433
No 33
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=76.22 E-value=3.5 Score=36.21 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=46.4
Q ss_pred EEEEEecccceee-EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 226 TMLYSISDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 226 s~LYsIsde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
+++..++-+++.+ -....|.++.+..+..+.+|..|..|.+.+.+.++||.|. -+.+.|
T Consensus 77 ~~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLA-Gk~L~f 136 (156)
T PRK15095 77 DLIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLA-GQTVHF 136 (156)
T ss_pred HHEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCC-CCEEEE
Confidence 4677777677653 2356787777777777889999999999999999999998 666665
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=75.48 E-value=13 Score=38.34 Aligned_cols=116 Identities=21% Similarity=0.376 Sum_probs=77.6
Q ss_pred CCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEcCCEEEEEEecC------------------
Q 020609 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKA------------------ 253 (323)
Q Consensus 194 ~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS~Gimll~~q~~------------------ 253 (323)
|-|-|=-=+...|++.--..|++.+|||..|=++|=.+ --|+|.-.++++|+|+-- .+.
T Consensus 236 HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtc-SkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 236 HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTC-SKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred CCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEe-cCCceeEEEeccCchHHHHHH
Confidence 44554322333357776778999999999999976443 348999999999999632 111
Q ss_pred ----------------------CCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEecccc
Q 020609 254 ----------------------SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDESNS 310 (323)
Q Consensus 254 ----------------------~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~~ 310 (323)
++-=-+|+.++-||+.+..++ .+.+-|- --|++.+|.|-- -+..+++||+.+.
T Consensus 315 VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~---gHkRGIA-ClQYr~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIA-CLQYRDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred HHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhh---cccccce-ehhccCeEEEecCCCceEEEEecccc
Confidence 112246777777777776555 2345555 457888888865 6777888888776
Q ss_pred ceee
Q 020609 311 GCLE 314 (323)
Q Consensus 311 ~l~e 314 (323)
.|..
T Consensus 391 ~cLR 394 (499)
T KOG0281|consen 391 ACLR 394 (499)
T ss_pred HHHH
Confidence 6543
No 35
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=75.04 E-value=60 Score=28.77 Aligned_cols=135 Identities=13% Similarity=0.173 Sum_probs=80.4
Q ss_pred ccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecC
Q 020609 123 ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD 202 (323)
Q Consensus 123 ~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDd 202 (323)
+.+...+.++...+.-|+++=.+.+++.+.+++ ..-+ . ++..- +++ + .++++-. -....-|-|..
T Consensus 46 ~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~--g~~~-~--~v~ly---d~~-~-----~~i~~~~-~~~~n~i~wsP 110 (194)
T PF08662_consen 46 EKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY--GSMP-A--KVTLY---DVK-G-----KKIFSFG-TQPRNTISWSP 110 (194)
T ss_pred cCCCccceeeccCCCceEEEEECcCCCEEEEEE--ccCC-c--ccEEE---cCc-c-----cEeEeec-CCCceEEEECC
Confidence 455667777776666699999999999988753 2222 1 22222 222 2 2233322 12334577875
Q ss_pred CCceEEEEec--CCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCC---CeeeEEEEEeecCceeeee
Q 020609 203 VNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKAS---GHVPLKILSIEDGTVLKSF 273 (323)
Q Consensus 203 vN~kilty~a--q~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~---~~iPlkIlsIedG~~l~~~ 273 (323)
-..-+++... ..|...|||.++++.+.+......-.+.-| +|-.++...-.. .=--++|.+. +|+.+...
T Consensus 111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 111 DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 5444444332 257899999999999999999888888888 455555443210 0112356665 46655543
No 36
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=73.72 E-value=75 Score=29.27 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcE----EEEEecc-cceeeEEEcC-CEEEEEEecCCCeeeEEEEEeec
Q 020609 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSISD-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIED 266 (323)
Q Consensus 193 ~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs----~LYsIsd-e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIed 266 (323)
.+|.++-||..+..+.+.+..++...|||+.+.. .+-.+.. .+...+.++| |-.+++-.-..+. +.++++.+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~--v~v~d~~~ 157 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDR--IRLFTLSD 157 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCE--EEEEEECC
Confidence 4799999998888888888778999999997432 3333322 4556677774 4454444444443 57788876
Q ss_pred Cceeeee---eeccccCC---cchhhhhccceeEEEec-CCceeEEeccc
Q 020609 267 GTVLKSF---NHLLHRNK---KVDFIEQFNEKLLVKQE-NENLQILDESN 309 (323)
Q Consensus 267 G~~l~~~---~~~L~~sk---~iqFiE~f~EkLLIKQE-~~~LqI~Dl~~ 309 (323)
...+... ....+... .+.|- .-+.++++=-| +..+.+||+..
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeC
Confidence 3323210 00011111 13332 23457877766 88999999973
No 37
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=72.79 E-value=92 Score=29.91 Aligned_cols=187 Identities=13% Similarity=0.127 Sum_probs=94.0
Q ss_pred eeccchhhhhhccccceeeecccccEEEEEeCCCCceE----------EEEEeecCCCeEEEEEeEecCCCceeeeeeee
Q 020609 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVI----------RSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 102 v~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvI----------rSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (323)
+.+.+.|++...+|.-.|||..||+.+--.+...+.-+ -++-+ .++.+++.+ .-..|.|--.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~-----~~g~l~ald~- 137 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS-----EKGQVYALNA- 137 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc-----CCCEEEEEEC-
Confidence 34688999999999999999999999987766542111 01111 123333311 1123444322
Q ss_pred hhhhhhCCC----CCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEE
Q 020609 172 IEYIRRGKP----DAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247 (323)
Q Consensus 172 i~~i~~Gk~----~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Giml 247 (323)
.-||+ +.+.+.. +-.+..-|-+=+-..+|.+.++++++|. .+|....-..-..+. ....--+.+|.++
T Consensus 138 ----~tG~~~W~~~~~~~~~-ssP~v~~~~v~v~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~--~~~sP~v~~~~v~ 209 (394)
T PRK11138 138 ----EDGEVAWQTKVAGEAL-SRPVVSDGLVLVHTSNGMLQALNESDGA-VKWTVNLDVPSLTLR--GESAPATAFGGAI 209 (394)
T ss_pred ----CCCCCcccccCCCcee-cCCEEECCEEEEECCCCEEEEEEccCCC-EeeeecCCCCccccc--CCCCCEEECCEEE
Confidence 22332 1111111 1112223444455567777777777775 356654321111100 0001112234332
Q ss_pred EEEecCCCeeeEEEEEeecCceeeeeeecccc------------CCcchhhhhccceeEEEecCCceeEEeccccce
Q 020609 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHR------------NKKVDFIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~------------sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
+.. ..+. +.-++++||+.+-++..--+. ..++ ..+..+++--.+..|..+|+.+.+.
T Consensus 210 -~~~-~~g~--v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 210 -VGG-DNGR--VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV----VVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred -EEc-CCCE--EEEEEccCChhhheeccccCCCccchhcccccCCCcE----EECCEEEEEEcCCeEEEEECCCCCE
Confidence 222 2222 345788899887655421110 1111 2467788777778888888877653
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=70.24 E-value=4.9 Score=41.03 Aligned_cols=192 Identities=20% Similarity=0.274 Sum_probs=119.4
Q ss_pred ceeEEeecc--chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020609 97 KIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (323)
Q Consensus 97 ~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~ 174 (323)
+|.-|-+.+ +.++-=++-|--.++--+||+-+=-+.+.+..=|-|+=+.+.|..+... |++ +++.+--
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~----sfD------~tvRiHG 334 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA----SFD------QTVRIHG 334 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc----ccc------ceEEEec
Confidence 344444442 4666677888888888888884334555666678888899988887763 345 4666677
Q ss_pred hhhCCCCCCCcceeecccCCCCeE---EecCCCceEEEEecCCCeEEEEeccCcEEEE--Eecccc-----eeeEEEcCC
Q 020609 175 IRRGKPDAGFALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDKN-----VQEIKISPG 244 (323)
Q Consensus 175 i~~Gk~~~g~~LFe~~~L~~PgFV---EFDdvN~kilty~aq~~~YrVfdlknYs~LY--sIsde~-----VqEIkIS~G 244 (323)
++.||.-+ |--.|-.|| .|-+.-..|+++ ..|++.|||++|+.+||- .-..++ |.=+-=+|.
T Consensus 335 lKSGK~LK-------EfrGHsSyvn~a~ft~dG~~iisa-SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 335 LKSGKCLK-------EFRGHSSYVNEATFTDDGHHIISA-SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred cccchhHH-------HhcCccccccceEEcCCCCeEEEe-cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 78888622 222334443 466666677775 468999999999999763 222221 222222344
Q ss_pred EEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhh----hhccceeEEEecCCceeEEecccccee
Q 020609 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI----EQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 245 imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFi----E~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+|+ +-++ .|+++ |+++ .|+++.+|.. .....=||+ -.-+|-++---|+.-|--+.+.+..|-
T Consensus 407 h~i-VCNr-sntv~--imn~-qGQvVrsfsS--GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 407 HFI-VCNR-SNTVY--IMNM-QGQVVRSFSS--GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred eEE-EEcC-CCeEE--EEec-cceEEeeecc--CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 442 2233 33333 3343 4888888764 333444554 345788888888988888888887763
No 39
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=69.92 E-value=4.4 Score=37.44 Aligned_cols=60 Identities=22% Similarity=0.455 Sum_probs=47.0
Q ss_pred CcEEEEEecccceeeEE-EcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 224 NYTMLYSISDKNVQEIK-ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 224 nYs~LYsIsde~VqEIk-IS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
+=+++..++.+.++++. +.+|+.+.. +.....+|..|..|.+.+++.++||.|. -+.+.|
T Consensus 72 d~~lV~~vpr~~F~~~~~l~~G~~~~~-~~~~G~~~~~V~ev~~d~V~vD~NHPLA-G~~L~F 132 (196)
T PRK10737 72 DENLVQRVPKDVFMGVDELQVGMRFLA-ETDQGPVPVEITAVEDDHVVVDGNHMLA-GQNLKF 132 (196)
T ss_pred ChHHEEEecHHHCCCccCCCCCCEEEE-eCCCCcEEEEEEEEcCCEEEEECCCcCC-CCEEEE
Confidence 34578888888887653 789988555 4455579999999999999999999998 555654
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=69.38 E-value=25 Score=36.62 Aligned_cols=179 Identities=16% Similarity=0.221 Sum_probs=108.7
Q ss_pred hhhhccccceeeecccccEEE--EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcc
Q 020609 109 FALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (323)
Q Consensus 109 ~aL~~sG~c~af~r~tn~~iC--~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~L 186 (323)
+.-++||- |..|+|..+= +|+-.+|..||++=+..+...+|+ .|+.-.+|----+.+-++.-+-
T Consensus 112 ltgs~SGE---FtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS-----gD~gG~iKyWqpnmnnVk~~~a------ 177 (464)
T KOG0284|consen 112 LTGSQSGE---FTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMIS-----GDKGGMIKYWQPNMNNVKIIQA------ 177 (464)
T ss_pred Eeeccccc---EEEecCceeeHHHHhhhhcccceeEEEccCCCEEEE-----cCCCceEEecccchhhhHHhhH------
Confidence 33455554 5555553222 678899999999999999999987 4454555544333333321110
Q ss_pred eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEEEEecCCCeeeEEEEEe
Q 020609 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (323)
Q Consensus 187 Fe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll~~q~~~~~iPlkIlsI 264 (323)
=.++.++- +-|-....|-+|| ..||+.|+||-..+..==.|+ .=+|.-+-=-|--=|+.--...+ ++|+.|-
T Consensus 178 hh~eaIRd---lafSpnDskF~t~-SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn--lVKlWDp 251 (464)
T KOG0284|consen 178 HHAEAIRD---LAFSPNDSKFLTC-SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN--LVKLWDP 251 (464)
T ss_pred hhhhhhhe---eccCCCCceeEEe-cCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc--eeEeecC
Confidence 01133332 3344555666665 579999999999988533333 22333333333333334444455 9999999
Q ss_pred ecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEecc
Q 020609 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDES 308 (323)
Q Consensus 265 edG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (323)
-+|++|.++-.-=..=-.+.|.--. -+||---+|.+++++|++
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehh
Confidence 9999998664200111234454444 678888899999999999
No 41
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=69.10 E-value=16 Score=38.49 Aligned_cols=106 Identities=18% Similarity=0.361 Sum_probs=79.7
Q ss_pred Cce-EEEEecCCCeEEEEeccCcE-----EEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeecc
Q 020609 204 NGK-VLTYSAQDSIYKVFDLKNYT-----MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (323)
Q Consensus 204 N~k-ilty~aq~~~YrVfdlknYs-----~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L 277 (323)
||. ++..+....-|-.|||.+=+ .+|-...+-+.-+.||+--=.+..++..++| .||..-||+.+++|+. =
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I--~lLhakT~eli~s~Ki-e 344 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI--HLLHAKTKELITSFKI-E 344 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceE--Eeehhhhhhhhheeee-c
Confidence 676 77777788889999997654 6777777777778888443345667777775 6799999999999884 2
Q ss_pred ccCCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 278 HRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 278 ~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
..-+++-|-+- ...|++--+.+.+-+|||+...|.
T Consensus 345 G~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 345 GVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCL 379 (514)
T ss_pred cEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceE
Confidence 45566666643 367777778889999999988664
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=68.71 E-value=96 Score=31.18 Aligned_cols=107 Identities=14% Similarity=0.230 Sum_probs=66.4
Q ss_pred ceEEEEecCCCeEEEEeccCcEEEEEecccc-ee--eEEEcCCEEEEEEecC-CCeeeEEEEEeecCc-------eeeee
Q 020609 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-VQ--EIKISPGIMLLIFTKA-SGHVPLKILSIEDGT-------VLKSF 273 (323)
Q Consensus 205 ~kilty~aq~~~YrVfdlknYs~LYsIsde~-Vq--EIkIS~Gimll~~q~~-~~~iPlkIlsIedG~-------~l~~~ 273 (323)
...+|= +.|.+-|.||.++=++|+.+.-.- |. |+-.++.+.|+..... ...=-+.+++|++-. ++..+
T Consensus 65 ~~liTG-SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 65 KHLITG-SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred ceeeec-cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 344442 336678999999999999986332 33 4444566666555544 444567788888433 22222
Q ss_pred eeccccCCc-chhhhhccceeEEEecCCceeEEecccc-ceee
Q 020609 274 NHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDESNS-GCLE 314 (323)
Q Consensus 274 ~~~L~~sk~-iqFiE~f~EkLLIKQE~~~LqI~Dl~~~-~l~e 314 (323)
. -|-+|. .--.-.++|+|+---|+.+|.+||+++. ++.+
T Consensus 144 ~--t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~ 184 (327)
T KOG0643|consen 144 P--TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD 184 (327)
T ss_pred c--CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee
Confidence 1 121111 1124567899999999999999999995 4433
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=68.60 E-value=11 Score=39.71 Aligned_cols=119 Identities=20% Similarity=0.245 Sum_probs=82.4
Q ss_pred cccCCCC------eEEecCCCceEEEEecCCCeEEEEeccC-cEEE--EEecccceeeEEEc-CCEEEEEEecCCCeeeE
Q 020609 190 ESLKWPG------FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPL 259 (323)
Q Consensus 190 ~~L~~Pg------FVEFDdvN~kilty~aq~~~YrVfdlkn-Ys~L--YsIsde~VqEIkIS-~Gimll~~q~~~~~iPl 259 (323)
-+..|+| ++.|-...+..+.-...|+..++|+..+ +.+| |.--.+-|.+++.+ .|.-. .-+.-=-.+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~f---LS~sfD~~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSF---LSASFDRFL 282 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCee---eeeecceee
Confidence 4555666 4557777888999889999999999998 7766 77778889999888 34332 223333578
Q ss_pred EEEEeecCceeeeeeeccccCCcchhhhhcc-ceeEEEecCCceeEEecccccee
Q 020609 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 260 kIlsIedG~~l~~~~~~L~~sk~iqFiE~f~-EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
||.|.|||+++-+|... ..---+. .+.-+ --.|+---++.++-||+|+.++.
T Consensus 283 KlwDtETG~~~~~f~~~-~~~~cvk-f~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD-KVPTCVK-FHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred eeeccccceEEEEEecC-CCceeee-cCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 99999999999988631 1111111 11122 23455567889999999998863
No 44
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.46 E-value=9.3 Score=35.05 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=54.4
Q ss_pred cccccccccceeEEeeccchhhhhhccccceeeecccccEEEEEeC---------------CCCceEEEEEeecCCCeEE
Q 020609 88 VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNV---------------TADEVIRSLFYNKNNDSLI 152 (323)
Q Consensus 88 ~lpfl~kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~---------------s~dEvIrSiFyNk~NdSlI 152 (323)
.+|+|.=-++|.=+-.-++.++|++.+|.+.++|-.+++ |.+.+ ....-|.++..+++..-||
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k--~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGK--AVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV 82 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCe--eccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence 378888889988888889999999999999999998877 55544 5677788888887777777
Q ss_pred EEE
Q 020609 153 TVS 155 (323)
Q Consensus 153 tvS 155 (323)
+.|
T Consensus 83 ~ls 85 (219)
T PF07569_consen 83 TLS 85 (219)
T ss_pred EEe
Confidence 766
No 45
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=67.79 E-value=63 Score=32.23 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=95.3
Q ss_pred ceeEEeeccchhhhhhccccceeee-------cccccEEEEEeCCCC---c--eEEEEEeecCCCeEEEEEeEecCCCce
Q 020609 97 KIIEIVAARDIVFALAQSGVCAAFC-------RETNQRICFLNVTAD---E--VIRSLFYNKNNDSLITVSVYASDNFSS 164 (323)
Q Consensus 97 ~V~EIv~a~diI~aL~~sG~c~af~-------r~tn~~iC~LN~s~d---E--vIrSiFyNk~NdSlItvSvy~sd~fS~ 164 (323)
+|-..++-++.++.-.. |+..++. ..+-+..=..||-.- | =|-+++.....+|+|++ . .|. +
T Consensus 64 piy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A--g-GD~--~ 137 (325)
T KOG0649|consen 64 PIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA--G-GDG--V 137 (325)
T ss_pred CeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe--c-CCe--E
Confidence 44444455555444433 5554442 112222225566443 2 37899999889999993 2 443 4
Q ss_pred eeeeeeehhhhhhCCCCCCCcceeecccCCCCeEE---ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEE
Q 020609 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI 241 (323)
Q Consensus 165 LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVE---FDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkI 241 (323)
+.|- +++.|+ |+.+--.|-+|+- --+-|+.|++ -++||+.||||+|+=.++=-|....= +=.+
T Consensus 138 ~y~~-----dlE~G~-------i~r~~rGHtDYvH~vv~R~~~~qils-G~EDGtvRvWd~kt~k~v~~ie~yk~-~~~l 203 (325)
T KOG0649|consen 138 IYQV-----DLEDGR-------IQREYRGHTDYVHSVVGRNANGQILS-GAEDGTVRVWDTKTQKHVSMIEPYKN-PNLL 203 (325)
T ss_pred EEEE-----EecCCE-------EEEEEcCCcceeeeeeecccCcceee-cCCCccEEEEeccccceeEEeccccC-hhhc
Confidence 4443 333343 3444445666654 3367888988 57899999999999775544431110 0011
Q ss_pred c--CCEEEEEEecCCCee------eEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEec
Q 020609 242 S--PGIMLLIFTKASGHV------PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDE 307 (323)
Q Consensus 242 S--~Gimll~~q~~~~~i------PlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl 307 (323)
. .|--++-.....+.+ -+.|..+-..|++--|-.. .+.+.++|.| ..+|+--||.-.|-|-+
T Consensus 204 Rp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpip-a~v~~v~F~~---d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 204 RPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIP-ARVHLVDFVD---DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecc-cceeEeeeec---ceEEEeccccceeeeee
Confidence 1 121111111111111 2445555555555544432 3344555432 55555555666655544
No 46
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=67.05 E-value=1.1e+02 Score=28.71 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=94.5
Q ss_pred eeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCC
Q 020609 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (323)
Q Consensus 102 v~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~ 181 (323)
+.+.+.|++.+..|.-.|||..||+.+--.+... ++..+.... ++.+++.+ .+ ..|.|-.. ..|+.-
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v~--~~~v~v~~---~~--g~l~ald~-----~tG~~~ 128 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGAD--GGLVFVGT---EK--GEVIALDA-----EDGKEL 128 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEEc--CCEEEEEc---CC--CEEEEEEC-----CCCcEe
Confidence 3457889999999999999999999887666543 233344332 33444322 11 23333322 223320
Q ss_pred CCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc-e------eeEEEcCCEEEEEEecCC
Q 020609 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-V------QEIKISPGIMLLIFTKAS 254 (323)
Q Consensus 182 ~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~-V------qEIkIS~Gimll~~q~~~ 254 (323)
=... +.......|-. .+++++. ...++....||.++=+.+++..... . ...-+.+|.++ +-. ..
T Consensus 129 W~~~-~~~~~~~~p~v-----~~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~-~~ 199 (377)
T TIGR03300 129 WRAK-LSSEVLSPPLV-----ANGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGF-AG 199 (377)
T ss_pred eeec-cCceeecCCEE-----ECCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EEC-CC
Confidence 0000 11112222322 1233333 2345556666666666665554322 0 11123345432 222 22
Q ss_pred CeeeEEEEEeecCceeeeeeeccccC-Cc---c-hh---hhhccceeEEEecCCceeEEecccccee
Q 020609 255 GHVPLKILSIEDGTVLKSFNHLLHRN-KK---V-DF---IEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 255 ~~iPlkIlsIedG~~l~~~~~~L~~s-k~---i-qF---iE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
.. +.-++++||+.+-+...-.+.. .+ + ++ -...+..+++--.+..|..||+.+.++.
T Consensus 200 g~--v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 200 GK--LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred CE--EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE
Confidence 22 4567889999876543211100 00 0 00 0123678888888889999999876543
No 47
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=64.63 E-value=37 Score=34.29 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=75.6
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcE-----EEEEecccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs-----~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
++|-..-+-.+++..=|+..|+|++.+-- -++++. .-|.++.-| +|.-+ +.-.... -+++.+|++|+...
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~-~PvL~v~WsddgskV-f~g~~Dk--~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD-GPVLDVCWSDDGSKV-FSGGCDK--QAKLWDLASGQVSQ 108 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccC-CCeEEEEEccCCceE-EeeccCC--ceEEEEccCCCeee
Confidence 45655555566677779999999999841 344444 556677766 44332 2222222 47999999998877
Q ss_pred eeeeccccCCcchhhhhccceeEEE-ecCCceeEEecccccee
Q 020609 272 SFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDESNSGCL 313 (323)
Q Consensus 272 ~~~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~l~ 313 (323)
-..|. .+-+-+.|++-.+-.+|+- -=|+.|+-||.|++..+
T Consensus 109 v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv 150 (347)
T KOG0647|consen 109 VAAHD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV 150 (347)
T ss_pred eeecc-cceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence 66664 4466777999888545544 47899999999987643
No 48
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.33 E-value=45 Score=36.70 Aligned_cols=119 Identities=14% Similarity=0.276 Sum_probs=69.9
Q ss_pred ccCCCCeE---EecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCee-------eEE
Q 020609 191 SLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHV-------PLK 260 (323)
Q Consensus 191 ~L~~PgFV---EFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~i-------Plk 260 (323)
...||+|| +|.+++++=..==.=|+-.|+|+..+-.-++-= +++ +=|=.+.|+|..... .-.
T Consensus 405 ~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~---Dl~-----~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 405 VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN---DLR-----DLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh---hhh-----hhheeEEeccCCceEEEEEeccEEE
Confidence 45688886 688887775443333777888876655433211 111 222334445443321 123
Q ss_pred EEEeecCceeeeeeeccccCCc--------chhhhhccceeEEEecCCceeEEeccccceeeecc
Q 020609 261 ILSIEDGTVLKSFNHLLHRNKK--------VDFIEQFNEKLLVKQENENLQILDESNSGCLELSR 317 (323)
Q Consensus 261 IlsIedG~~l~~~~~~L~~sk~--------iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~~ 317 (323)
+++.++=+...++-..+++.|+ +||.=.-.+++||--+|+.++|||++..++++.=|
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 3344433333344433443333 57777777899999999999999999888876533
No 49
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=59.51 E-value=22 Score=39.16 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=51.7
Q ss_pred CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEE---cCCEEEEEEecCCCeeeEEEEEeecCceeee
Q 020609 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI---SPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 196 gFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkI---S~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (323)
.-|+|..+...+.| ++.|.+.|+|.+.++|||=-++.-.=.=.|. ++|-- ++.-.+.+. +||.+|-|++++++
T Consensus 509 w~V~Fs~~dq~laT-~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~q-liS~~adGl--iKlWnikt~eC~~t 584 (775)
T KOG0319|consen 509 WCVSFSKNDQLLAT-CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQ-LISAGADGL--IKLWNIKTNECEMT 584 (775)
T ss_pred EEEEeccccceeEe-ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcE-EEeccCCCc--EEEEeccchhhhhh
Confidence 35899876555544 6679999999999999999988554333332 35544 233333332 59999999999996
Q ss_pred e
Q 020609 273 F 273 (323)
Q Consensus 273 ~ 273 (323)
+
T Consensus 585 l 585 (775)
T KOG0319|consen 585 L 585 (775)
T ss_pred h
Confidence 5
No 50
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=56.75 E-value=1.3e+02 Score=25.76 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=55.9
Q ss_pred CCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeecc------ccCCcch
Q 020609 213 QDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL------HRNKKVD 284 (323)
Q Consensus 213 q~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L------~~sk~iq 284 (323)
.++....||.++=+.+.+.+ +.-....-+.++.+++.. ..+ .+..++++||+.+-.+.... .....+.
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~--~~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~ 119 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT--SDG--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA 119 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEE--TTS--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE
T ss_pred CCCEEEEEECCCCCEEEEeeccccccceeeeccccccccc--cee--eeEecccCCcceeeeeccccccccccccccCce
Confidence 44455555555555554443 222222355666664444 223 77789999999999853211 1111111
Q ss_pred hhhhccceeEEEecCCceeEEeccccce
Q 020609 285 FIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 285 FiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
..++.+++--.+..|..+|+.+.++
T Consensus 120 ---~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 120 ---VDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp ---EETTEEEEEETCSEEEEEETTTTEE
T ss_pred ---EecCEEEEEeccCcEEEEecCCCcE
Confidence 1278889998899999999998877
No 51
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=55.65 E-value=1.8e+02 Score=29.35 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=87.1
Q ss_pred CceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCC--CceEEEEecC
Q 020609 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV--NGKVLTYSAQ 213 (323)
Q Consensus 136 dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdv--N~kilty~aq 213 (323)
.+.|-++=+..+.+..|+||+ |-| +++.+=+++-=|+ .+--+.|-|++....+ .|-+.|+-..
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~--s~D------ktvKvWnl~~~~l-------~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSA--SWD------KTVKVWNLRNCQL-------RTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEc--cCC------ceEEEEccCCcch-------hhccccccccEEEEEECCCCCEEecCCC
Confidence 678999999999888888663 333 1222222221111 1112336677766654 5888998888
Q ss_pred CCeEEEEeccCcEEEEEeccc-ceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeecc
Q 020609 214 DSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (323)
Q Consensus 214 ~~~YrVfdlknYs~LYsIsde-~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L 277 (323)
+|.--.|||..-+.||++.+. .|.-+-+||.-..|-..-..+ +||.+++++.++.+++...
T Consensus 213 dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s---IkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS---IKIWDLESKAVVEELKLDG 274 (315)
T ss_pred CceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc---eEEEeccchhhhhhccccc
Confidence 999999999999999999864 567788898876555444444 8999999999999887443
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.97 E-value=16 Score=37.95 Aligned_cols=110 Identities=12% Similarity=0.197 Sum_probs=71.1
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeee
Q 020609 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
-++||-.|.-+++ ..+|++-++|+..+|.++=.+ -.+.|-+.|+.-+.--++ -.+.-.-+|+.+|+.+.+.++..
T Consensus 224 ~~d~d~~~~~~iA-as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vV--sgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 224 SIDFDSDNKHVIA-ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVV--SGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred eeeecCCCceEEe-ecCCCceeeeeccchhhhhhhcccccceeeehhhcccccee--eccccchhhhhhhhhhheecccc
Confidence 3678877766665 567899999999999976544 456677777765554322 12344678999999999888543
Q ss_pred eccccCCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 275 ~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+-+.--| |+.-..-.+=---+++++.||.++..++
T Consensus 301 ---~~S~cnD-I~~~~~~~~SgH~DkkvRfwD~Rs~~~~ 335 (459)
T KOG0288|consen 301 ---PGSQCND-IVCSISDVISGHFDKKVRFWDIRSADKT 335 (459)
T ss_pred ---ccccccc-eEecceeeeecccccceEEEeccCCcee
Confidence 3233333 3332222222234567999999887765
No 53
>PF04435 SPK: Domain of unknown function (DUF545) ; InterPro: IPR006570 SPK is a domain of unknown function found in SET and PHD domain containing proteins and protein kinases.
Probab=54.86 E-value=14 Score=29.36 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=21.7
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEE
Q 020609 192 LKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (323)
Q Consensus 192 L~~PgFVEFDdvN~kilty~aq~~~Yr 218 (323)
|.-=|-||.|+ +++|+.|.+.||.++
T Consensus 83 L~~~a~v~lD~-~~rI~~Y~s~dg~l~ 108 (109)
T PF04435_consen 83 LRKHADVELDE-KGRIIKYKSKDGSLK 108 (109)
T ss_pred HHhCcEEEEcC-CCCEEEEEeCCCEEe
Confidence 44467899997 799999999999875
No 54
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=54.63 E-value=1.2e+02 Score=30.24 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=57.1
Q ss_pred CCCeEEecCCCceEEEEec---------CCCeEEEEeccCcEEEEEecc--c-------ceeeEEEc-CCEEEEEEecC-
Q 020609 194 WPGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSISD--K-------NVQEIKIS-PGIMLLIFTKA- 253 (323)
Q Consensus 194 ~PgFVEFDdvN~kilty~a---------q~~~YrVfdlknYs~LYsIsd--e-------~VqEIkIS-~Gimll~~q~~- 253 (323)
+|..+ +-.-+..+.+.+. .++...|||.++.+.+=+|+- + .-..+.+| +|-.|++.+-.
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p 126 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP 126 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC
Confidence 57776 7778888888888 889999999999999977762 2 22367777 56677777744
Q ss_pred CCeeeEEEEEeecCceeeee
Q 020609 254 SGHVPLKILSIEDGTVLKSF 273 (323)
Q Consensus 254 ~~~iPlkIlsIedG~~l~~~ 273 (323)
.+. +.++|+++++.++.+
T Consensus 127 ~~~--V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 127 SPA--VGVVDLEGKAFVRMM 144 (352)
T ss_pred CCE--EEEEECCCCcEEEEE
Confidence 444 378888888888733
No 55
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=54.28 E-value=11 Score=34.52 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=48.2
Q ss_pred ccCcEEEEEecccceeeE-EEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcch
Q 020609 222 LKNYTMLYSISDKNVQEI-KISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (323)
Q Consensus 222 lknYs~LYsIsde~VqEI-kIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iq 284 (323)
.+|=+++=.++...+++. .+.+|+.+.+-.+. ..+|-+|.++..+..+.+|||.|. -+.+-
T Consensus 71 e~~~~lvq~vp~~~F~~~~~~~vGm~~~~~~~~-~~~~~~V~~V~~~~V~VDfNHpLA-GktL~ 132 (174)
T COG1047 71 EYDPDLVQRVPRDEFQGVGELEVGMEVEAEGGD-GEIPGVVTEVSGDRVTVDFNHPLA-GKTLH 132 (174)
T ss_pred CCChHHeEEecHHHhCcCCCCCCCcEEEEcCCC-ceeeEEEEEEcCCEEEEeCCCcCC-CCeEE
Confidence 334446667777888888 78899996655555 999999999999999999999988 44444
No 56
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=54.27 E-value=80 Score=23.72 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=33.3
Q ss_pred ceEEEEecCCCeE------EEEeccCcEEEEEecccceeeEEEcCCEEEEEEec
Q 020609 205 GKVLTYSAQDSIY------KVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK 252 (323)
Q Consensus 205 ~kilty~aq~~~Y------rVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~ 252 (323)
.++++++++++.+ .+|-.+....+|.|.-++=.+|+.+++|-+++...
T Consensus 26 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~i~~T~~H~~~~~~~ 79 (100)
T smart00306 26 DKVLALDEGTLKYSPVKVFLVREPKGEKKFYRIKTENGREITLTPDHLLLVRDG 79 (100)
T ss_pred CEEEEecCCCcEEEEEEEEEEEcCCcceeEEEEEECCCCEEEECCCCEEEEecC
Confidence 3466666544332 23444555699999988888999999999777655
No 57
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.13 E-value=66 Score=29.55 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCCcceeecccCCC-CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe
Q 020609 182 AGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 231 (323)
Q Consensus 182 ~g~~LFe~~~L~~P-gFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI 231 (323)
+|+.++-.-.|.+| -|++-+ +.-|..=-.+|...|||+++-+.++.-
T Consensus 1 sGrrl~P~i~Lgs~~~~l~~~---~~~Ll~iT~~G~l~vWnl~~~k~~~~~ 48 (219)
T PF07569_consen 1 SGRRLLPPIVLGSPVSFLECN---GSYLLAITSSGLLYVWNLKKGKAVLPP 48 (219)
T ss_pred CCccccCcEecCCceEEEEeC---CCEEEEEeCCCeEEEEECCCCeeccCC
Confidence 36667777777777 455543 333554568999999999999977654
No 58
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=54.06 E-value=1.2e+02 Score=30.30 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=66.4
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEecccceeeEE--Ec-CCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccC
Q 020609 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIK--IS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (323)
Q Consensus 204 N~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIk--IS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~s 280 (323)
...||+-..-|-+.|+|-..+=-|...|...+-|==+ |+ ++-+|+.. ..=-+.|+||-++.+.--..+-+| +
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa----~~qhvRlyD~~S~np~Pv~t~e~h-~ 83 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA----GNQHVRLYDLNSNNPNPVATFEGH-T 83 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc----cCCeeEEEEccCCCCCceeEEecc-C
Confidence 4567776667999999999999999888766555333 33 44554322 222356777777665322222233 3
Q ss_pred Ccc---hhhhhccceeEEEecCCceeEEeccccce
Q 020609 281 KKV---DFIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 281 k~i---qFiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
|.| -| |.-+--|+---|+...+|||||+.++
T Consensus 84 kNVtaVgF-~~dgrWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 84 KNVTAVGF-QCDGRWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred CceEEEEE-eecCeEEEecCCCceEEEEeccCccc
Confidence 332 22 34456677777999999999999655
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=53.53 E-value=1e+02 Score=33.33 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred EeCCCCceEEEEEeecCCCeEEEEE------eEecCCCceeeeeeee--hhhhhhCCCCCCCcceeecccCCCCeEEecC
Q 020609 131 LNVTADEVIRSLFYNKNNDSLITVS------VYASDNFSSLRCRSTR--IEYIRRGKPDAGFALFESESLKWPGFVEFDD 202 (323)
Q Consensus 131 LN~s~dEvIrSiFyNk~NdSlItvS------vy~sd~fS~LkCr~~~--i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDd 202 (323)
|-|+..-+|+|+=|.-..+.|..|| ++--|.|.-+.|--=+ |.++..-| .-+.-=--.||-.
T Consensus 209 l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTK----------GHia~lt~g~whP 278 (641)
T KOG0772|consen 209 LQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTK----------GHIAELTCGCWHP 278 (641)
T ss_pred cCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccC----------Cceeeeecccccc
Q ss_pred CCceEEEEecCCCeEEEEeccCcE-EEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEE--Eee--------------
Q 020609 203 VNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKIL--SIE-------------- 265 (323)
Q Consensus 203 vN~kilty~aq~~~YrVfdlknYs-~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIl--sIe-------------- 265 (323)
-|.....-++.||+.|+||+.|.. .+=.|..+--+--|+.+-.- .+.+....|-.-.+ +||
T Consensus 279 ~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC--~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~ 356 (641)
T KOG0772|consen 279 DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC--AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK 356 (641)
T ss_pred CcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee--ecCCCcchhhhcccCCceeeeecCCcccccceE
Q ss_pred ------cCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccc
Q 020609 266 ------DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 266 ------dG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
.|+.+-++.+ -+-+-+||=.-++..|++|||++++
T Consensus 357 vk~AH~~g~~Itsi~F-----------S~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 357 VKDAHLPGQDITSISF-----------SYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred eeeccCCCCceeEEEe-----------ccccchhhhccCCCceeeeeccccc
No 60
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=53.23 E-value=1.4e+02 Score=25.14 Aligned_cols=109 Identities=18% Similarity=0.328 Sum_probs=67.8
Q ss_pred EEecCCCceEEEEecC-CCeEEEEeccCcEEEEEec--ccceeeEEEcCCE-EEEEEecCCCeeeEEEEEeecCceeee-
Q 020609 198 VEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKS- 272 (323)
Q Consensus 198 VEFDdvN~kilty~aq-~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gi-mll~~q~~~~~iPlkIlsIedG~~l~~- 272 (323)
+.|.+-+. .+..... ++.-++||+.+...+..+. ...+..+..+|.- .++.-....+.+. +.+..+|+.+..
T Consensus 161 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~--~wd~~~~~~~~~~ 237 (466)
T COG2319 161 LAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR--LWDLSTGKLLRST 237 (466)
T ss_pred EEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE--EEECCCCcEEeee
Confidence 34544444 4444454 9999999999866666555 4778888887333 2333345566666 557778888774
Q ss_pred eeeccccCCc-chhhhhccceeEEEecCCceeEEeccccce
Q 020609 273 FNHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 273 ~~~~L~~sk~-iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
+.. | ... +......+..++.--++..+++||+.....
T Consensus 238 ~~~--~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 238 LSG--H-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCC--C-CcceeEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 331 2 222 222333345555577999999999986653
No 61
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=52.47 E-value=13 Score=37.31 Aligned_cols=86 Identities=22% Similarity=0.407 Sum_probs=63.2
Q ss_pred CCceEEEEecCCCeEEE--------EeccCcEE---------EEEecccceeeEEEc--------C-CEEEEEEecCCCe
Q 020609 203 VNGKVLTYSAQDSIYKV--------FDLKNYTM---------LYSISDKNVQEIKIS--------P-GIMLLIFTKASGH 256 (323)
Q Consensus 203 vN~kilty~aq~~~YrV--------fdlknYs~---------LYsIsde~VqEIkIS--------~-Gimll~~q~~~~~ 256 (323)
-+|+|.-|.+++|-|+| |-|+++.+ +|=++-+++.-||.. + +.--.++.++|.+
T Consensus 54 n~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gt 133 (345)
T COG4260 54 NGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGT 133 (345)
T ss_pred cCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCeecccccccceeEEeecce
Confidence 47999999999999997 56777764 555555555444433 2 5555678899999
Q ss_pred eeEEEEEeecCceeeeeeeccccCCcchhhhhccceeE
Q 020609 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL 294 (323)
Q Consensus 257 iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLL 294 (323)
+.+||-| ++. |..-++.++++=|+|+.|+.+|
T Consensus 134 ys~kvtD-----pi~-fi~~I~g~~dvy~v~di~~q~l 165 (345)
T COG4260 134 YSIKVTD-----PIL-FIQQIPGNRDVYTVDDINQQYL 165 (345)
T ss_pred EEEEecC-----HHH-HHHhccCCCceEEHHHHHHHHH
Confidence 9999865 233 6666789999999999998775
No 62
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=51.61 E-value=77 Score=33.69 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=71.1
Q ss_pred EecCCCceEEEEecCCCeEEEEeccCcE---EEEEecccceeeEEEc----------CCEEEEEEecCCCeeeEEEEEee
Q 020609 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDKNVQEIKIS----------PGIMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 199 EFDdvN~kilty~aq~~~YrVfdlknYs---~LYsIsde~VqEIkIS----------~Gimll~~q~~~~~iPlkIlsIe 265 (323)
|||++ |..|+-+..|++.|+|+|++=. .||.=+ +++--|+-| .|+|++-. .-.++ ++++|++
T Consensus 366 k~n~t-g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sa-s~dst--V~lwdv~ 440 (524)
T KOG0273|consen 366 KWNPT-GSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASA-SFDST--VKLWDVE 440 (524)
T ss_pred EECCC-CceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEe-ecCCe--EEEEEcc
Confidence 44443 5566666779999999998765 444444 445555655 24553322 22333 5889999
Q ss_pred cCceeeeee-eccccCCcchhhhhccceeEEEecCCceeEEeccccceeeec
Q 020609 266 DGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLELS 316 (323)
Q Consensus 266 dG~~l~~~~-~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~ 316 (323)
.|.+++.|. |- .+=-.+.|. .-++||.=---++-+-||+..+.++..-.
T Consensus 441 ~gv~i~~f~kH~-~pVysvafS-~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 441 SGVPIHTLMKHQ-EPVYSVAFS-PNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CCceeEeeccCC-CceEEEEec-CCCcEEEecCCCCeeEeccccchheeEee
Confidence 999999984 31 222333432 22677777778889999999888876543
No 63
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=51.26 E-value=2.3e+02 Score=27.21 Aligned_cols=181 Identities=15% Similarity=0.224 Sum_probs=95.0
Q ss_pred eccchhhhhhccccceeeecccccEEEEEeCCCCce-EE---E-EEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhh
Q 020609 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADEV-IR---S-LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (323)
Q Consensus 103 ~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEv-Ir---S-iFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~ 177 (323)
..++.|++-+..|.-.|||..||+.+-..+...... ++ | +.. ++.+++.+ ++ ..+.| +. ...
T Consensus 158 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~---~~--g~v~a--~d---~~~ 224 (394)
T PRK11138 158 VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGG---DN--GRVSA--VL---MEQ 224 (394)
T ss_pred EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEc---CC--CEEEE--EE---ccC
Confidence 346777777888888999999999988776532110 00 0 111 23333321 11 22222 21 122
Q ss_pred CCC---------CCCCcc-----eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcC
Q 020609 178 GKP---------DAGFAL-----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 243 (323)
Q Consensus 178 Gk~---------~~g~~L-----Fe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~ 243 (323)
|+. ..+..+ ...-.+...|.+-+-..+|.+.++++.+|.- +|... -.....+-+.+
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~---------~~~~~~~~~~~ 294 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKRE---------YGSVNDFAVDG 294 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeec---------CCCccCcEEEC
Confidence 221 000000 0011112234444444456666666666642 45432 11223345566
Q ss_pred CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccc--cCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~--~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
|.+.+.-. .+ -+..++.+||+.+-+...+.. .+.++ ..+++|++-.++..|.++|..+.++..
T Consensus 295 ~~vy~~~~--~g--~l~ald~~tG~~~W~~~~~~~~~~~sp~----v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 295 GRIYLVDQ--ND--RVYALDTRGGVELWSQSDLLHRLLTAPV----LYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CEEEEEcC--CC--eEEEEECCCCcEEEcccccCCCcccCCE----EECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 76654432 22 266778899998765542211 12232 258999999999999999999888754
No 64
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=50.42 E-value=1.8e+02 Score=29.18 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=62.2
Q ss_pred CCCe---EEecCCCceEEE-EecCC--------CeEEEEeccCcEEEEEec-ccceeeEEEcC-CE-EEEEEecCCCeee
Q 020609 194 WPGF---VEFDDVNGKVLT-YSAQD--------SIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GI-MLLIFTKASGHVP 258 (323)
Q Consensus 194 ~PgF---VEFDdvN~kilt-y~aq~--------~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gi-mll~~q~~~~~iP 258 (323)
.||= +.|..-.+++.. -+... +..-|+|+++.+.+..|. .....-|-+|+ |- .|+......+.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~-- 323 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT-- 323 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc--
Confidence 3555 888888888877 33222 689999999999999988 77888999995 55 66777776666
Q ss_pred EEEEEeecCceeeeee
Q 020609 259 LKILSIEDGTVLKSFN 274 (323)
Q Consensus 259 lkIlsIedG~~l~~~~ 274 (323)
+.++|..+|+.+++..
T Consensus 324 VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 324 LYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEECcCCeEEeeec
Confidence 5699999999999874
No 65
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=50.00 E-value=52 Score=36.98 Aligned_cols=108 Identities=15% Similarity=0.293 Sum_probs=76.0
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCC-------eeeEEEEEeecCcee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASG-------HVPLKILSIEDGTVL 270 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~-------~iPlkIlsIedG~~l 270 (323)
+--|.+|..+++..+ +|..+|||.++=.++ ...++..++-.+++.+... -..+.++|++|-++.
T Consensus 499 la~D~~n~~~vsa~~-~Gilkfw~f~~k~l~--------~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGA-DGILKFWDFKKKVLK--------KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred EEecCCCceEEEccC-cceEEEEecCCccee--------eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 567999999999765 579999999987744 4455667777777776643 356778888888777
Q ss_pred eeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 271 ~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
..|.---.+-.+++|=+ =+--|++---|+.+++|||-+..++..
T Consensus 570 R~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred HHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeee
Confidence 77762112233444432 234566666889999999999998864
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=47.00 E-value=1.8e+02 Score=30.32 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcE-EEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeec
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs-~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~ 276 (323)
|+|+| ++.+.+ ..+|.+.|+|||.+=. ..=-...+-+-.|-.+|-.=|++--.+.-++ .|.|=-+|.--+--..+
T Consensus 266 V~w~d-~~v~yS-~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~i--rl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 266 VVWSD-ATVIYS-VSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHI--RLWDPRTGDGSVVSQSL 341 (423)
T ss_pred EEEcC-CCceEe-ecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCce--eecCCCCCCCceeEEee
Q ss_pred cccCCcchhhh-----hccceeEEEe-cCCceeEEeccccc
Q 020609 277 LHRNKKVDFIE-----QFNEKLLVKQ-ENENLQILDESNSG 311 (323)
Q Consensus 277 L~~sk~iqFiE-----~f~EkLLIKQ-E~~~LqI~Dl~~~~ 311 (323)
+.++. |++ ..+|++|+-- -++..+.||+|+.+
T Consensus 342 ~gH~n---wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 342 IGHKN---WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ecchh---hhhheecCCCCceEEEEEecCCeEEEEEeccCC
No 67
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=46.92 E-value=1.6e+02 Score=33.43 Aligned_cols=114 Identities=17% Similarity=0.264 Sum_probs=75.2
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCee-------eEEEE
Q 020609 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHV-------PLKIL 262 (323)
Q Consensus 190 ~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~i-------PlkIl 262 (323)
.+|.||.- =.|--++. .++|..+.|+.++=+++|....=. .++=.+--.|+-.++ -+.|+
T Consensus 163 tal~HP~T----YLNKIvvG--s~~G~lql~Nvrt~K~v~~f~~~~-------s~IT~ieqsPaLDVVaiG~~~G~Viif 229 (910)
T KOG1539|consen 163 TALLHPST----YLNKIVVG--SSQGRLQLWNVRTGKVVYTFQEFF-------SRITAIEQSPALDVVAIGLENGTVIIF 229 (910)
T ss_pred eeEecchh----heeeEEEe--ecCCcEEEEEeccCcEEEEecccc-------cceeEeccCCcceEEEEeccCceEEEE
Confidence 55666642 13433443 678999999999999999876322 222222222222222 34789
Q ss_pred EeecCceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEeccccceeeecc
Q 020609 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDESNSGCLELSR 317 (323)
Q Consensus 263 sIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~~~l~ev~~ 317 (323)
++-.+++|++|.+.-.+=..+-|=-- ++.+|.-- .+.-+-+|||-.+.++-|-+
T Consensus 230 NlK~dkil~sFk~d~g~VtslSFrtD-G~p~las~~~~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 230 NLKFDKILMSFKQDWGRVTSLSFRTD-GNPLLASGRSNGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred EcccCcEEEEEEccccceeEEEeccC-CCeeEEeccCCceEEEEEcCCCeeeeeee
Confidence 99999999999986555555655433 45555544 55779999999999998866
No 68
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=46.70 E-value=1.1e+02 Score=31.61 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=45.6
Q ss_pred CCeEEEEeccCcE--EEEEecccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeee
Q 020609 214 DSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (323)
Q Consensus 214 ~~~YrVfdlknYs--~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~ 273 (323)
.|...+||.-|-. +...--+-.++-+.++ +|.||++.-...-+ ++++++.+|+.+.+|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV--IRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV--IRVFSVPEGQKLYEF 212 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE--EEEEEcCCccEeeee
Confidence 5677788888887 4455567789999998 78887777666555 589999999999977
No 69
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=46.62 E-value=1.4e+02 Score=30.23 Aligned_cols=110 Identities=14% Similarity=0.233 Sum_probs=67.3
Q ss_pred cCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCee-------eEE
Q 020609 192 LKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHV-------PLK 260 (323)
Q Consensus 192 L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~i-------Plk 260 (323)
..|+|= .+|+. +|--++-...|...-.|+..+=. ||+.-+|.. +-+|=+-+.+.+++| -+.
T Consensus 44 ~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 345554 47888 77777777778888888733221 222222222 223334444444444 367
Q ss_pred EEEeecCceeeeee------eccccCCcchhhhhccceeEE-EecCCceeEEeccccceeeec
Q 020609 261 ILSIEDGTVLKSFN------HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDESNSGCLELS 316 (323)
Q Consensus 261 IlsIedG~~l~~~~------~~L~~sk~iqFiE~f~EkLLI-KQE~~~LqI~Dl~~~~l~ev~ 316 (323)
.+|+|||+.+..++ .-+++++ .|-.|+. -+.+..+++||+|+++.++..
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~r-------rg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSR-------RGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred EEecccceeeehhccccceeeecCccc-------cCCeEEEecCCCceEEEEeecccchhhcc
Confidence 89999999998553 2333222 3334444 358899999999988888776
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.56 E-value=3.3e+02 Score=29.05 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=70.6
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc--eeeEEEcCC--EEEEEEecCCCeeeEEEEEeecC-ceee
Q 020609 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN--VQEIKISPG--IMLLIFTKASGHVPLKILSIEDG-TVLK 271 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~--VqEIkIS~G--imll~~q~~~~~iPlkIlsIedG-~~l~ 271 (323)
++-|...-+.++.....|+.-|+||+.+=.-.++|++-+ |--.-++|+ +|++.- .=.. -+++.|+-.- +.+.
T Consensus 115 ~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG-sYDg--~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 115 VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG-SYDG--KVRLWDTRSLTSRVV 191 (487)
T ss_pred EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec-CCCc--eEEEEEeccCCceeE
Confidence 677888999999999999999999998866677777432 344444443 443221 1112 2456666544 7777
Q ss_pred eeeeccccCCcchhhhhccceeEEEecCCceeEEecccc
Q 020609 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 272 ~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
+++|-.| =..|=| +=++-+++---|.+.++|||.+.
T Consensus 192 elnhg~p-Ve~vl~--lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 192 ELNHGCP-VESVLA--LPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred EecCCCc-eeeEEE--cCCCCEEEEcCCCeEEEEEecCC
Confidence 8776544 111111 12457888889999999999843
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.45 E-value=1.6e+02 Score=29.59 Aligned_cols=144 Identities=20% Similarity=0.261 Sum_probs=87.3
Q ss_pred hccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhh-hCCCCCCCcceeec
Q 020609 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-RGKPDAGFALFESE 190 (323)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~-~Gk~~~g~~LFe~~ 190 (323)
+--|.--.++..-.+-+|..|.. ..+|=+.-++...--|. +++|-+ + .|+.- ++| -||+-. .|.=..|
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~nlf---as~Sgd-~--~l~lw---dvr~~gk~~~-i~ah~~E 192 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGH-NSCIYQAAFSPHIPNLF---ASASGD-G--TLRLW---DVRSPGKFMS-IEAHNSE 192 (311)
T ss_pred ccCCceEeecCCCCcceEeecCC-ccEEEEEecCCCCCCeE---EEccCC-c--eEEEE---EecCCCceeE-EEeccce
Confidence 44566677777777888886654 44444444444333332 233333 2 23333 232 133211 1111123
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEecccc--eeeEEEcCCEEEEEEecCCCeeeEEEEEeecC
Q 020609 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKN--VQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 191 ~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs-~LYsIsde~--VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG 267 (323)
.|. -.+.-.|..+|+-.+.|+..|+||+++|. .|++|..-. |..+|.||.+--++ .-++--|-..|.+.+-+
T Consensus 193 il~----cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL-aSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 193 ILC----CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL-ASASYDMTVRIWDPERQ 267 (311)
T ss_pred eEe----ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh-hhccccceEEecccccc
Confidence 333 35667788999999999999999999998 899997665 55788888876333 34455577788887755
Q ss_pred ceee
Q 020609 268 TVLK 271 (323)
Q Consensus 268 ~~l~ 271 (323)
.-+.
T Consensus 268 ds~~ 271 (311)
T KOG0277|consen 268 DSAI 271 (311)
T ss_pred hhhh
Confidence 4444
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.42 E-value=49 Score=37.80 Aligned_cols=75 Identities=19% Similarity=0.393 Sum_probs=46.3
Q ss_pred EecCCCc--eEEEEecC---------CCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecC
Q 020609 199 EFDDVNG--KVLTYSAQ---------DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 199 EFDdvN~--kilty~aq---------~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG 267 (323)
+||+-.| |-+.++++ |-..|||++++=.|||.+. |++=.
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~-----------GHlDY------------------- 95 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-----------GHLDY------------------- 95 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc-----------cccce-------------------
Confidence 3555444 33555555 5567899999999999997 55511
Q ss_pred ceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeeec
Q 020609 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLELS 316 (323)
Q Consensus 268 ~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~ 316 (323)
-.+..| |+..| -||=--++..++|||..|+.|+-|=
T Consensus 96 VRt~~F----HheyP---------WIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 96 VRTVFF----HHEYP---------WILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred eEEeec----cCCCc---------eEEEccCCCeEEEEeccCCceEEEE
Confidence 111111 22111 2444457888888888888887764
No 73
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=43.09 E-value=75 Score=32.14 Aligned_cols=141 Identities=15% Similarity=0.243 Sum_probs=80.5
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecC---CCceEEEE
Q 020609 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD---VNGKVLTY 210 (323)
Q Consensus 134 s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDd---vN~kilty 210 (323)
.+.-.|--+=+++.+..|..+| +| =.-+.- |.+.|+-..-+.. |-+||-=.+ .|-..++-
T Consensus 88 gHsgAVM~l~~~~d~s~i~S~g----tD---k~v~~w---D~~tG~~~rk~k~-------h~~~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 88 GHSGAVMELHGMRDGSHILSCG----TD---KTVRGW---DAETGKRIRKHKG-------HTSFVNSLDPSRRGPQLVCS 150 (338)
T ss_pred cccceeEeeeeccCCCEEEEec----CC---ceEEEE---ecccceeeehhcc-------ccceeeecCccccCCeEEEe
Confidence 4455777888888887777655 22 122233 4444443211111 233333333 34444443
Q ss_pred ecCCCeEEEEecc------CcEEEEEecccceee---EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeee-------e
Q 020609 211 SAQDSIYKVFDLK------NYTMLYSISDKNVQE---IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF-------N 274 (323)
Q Consensus 211 ~aq~~~YrVfdlk------nYs~LYsIsde~VqE---IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~-------~ 274 (323)
-..|++.|+||++ +++.-|++.+-.+.+ =.+|.||= =-+|+.|+-.+..++-+ +
T Consensus 151 gsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId----------n~ikvWd~r~~d~~~~lsGh~DtIt 220 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID----------NDIKVWDLRKNDGLYTLSGHADTIT 220 (338)
T ss_pred cCCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc----------CceeeeccccCcceEEeecccCcee
Confidence 4448999999999 887777765433322 23344432 23577777666666522 2
Q ss_pred eccccCCcchhhhhccceeEEEecCCceeEEeccc
Q 020609 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDESN 309 (323)
Q Consensus 275 ~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (323)
++ |+-..|.+||=--=+..+++||++-
T Consensus 221 ~l--------sls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 221 GL--------SLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred eE--------EeccCCCccccccccceEEEEEecc
Confidence 32 4556677777777788899999873
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=42.57 E-value=48 Score=33.09 Aligned_cols=113 Identities=22% Similarity=0.312 Sum_probs=72.8
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEE--EEEEecCCCeee------EEEEEeecCc
Q 020609 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM--LLIFTKASGHVP------LKILSIEDGT 268 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gim--ll~~q~~~~~iP------lkIlsIedG~ 268 (323)
-+.|+.-...+|| -.++...|||||.-=. -.-+||.=++|-+ ++....-+-++. +++.|+.||+
T Consensus 105 ~~af~~ds~~llt-gg~ekllrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt 176 (334)
T KOG0278|consen 105 AVAFSQDSNYLLT-GGQEKLLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT 176 (334)
T ss_pred eEEecccchhhhc-cchHHHhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence 3678888888887 3567889999987532 3334444443322 112222222233 6899999999
Q ss_pred eeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEeccccceeeecccceec
Q 020609 269 VLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCLELSRRACNV 322 (323)
Q Consensus 269 ~l~~~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~ev~~~~~~~ 322 (323)
++.++.+. .++-=+|. -+++|-| -.|+.+..||.-+.++.+--+-.+||
T Consensus 177 ~v~sL~~~----s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV 227 (334)
T KOG0278|consen 177 EVQSLEFN----SPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNV 227 (334)
T ss_pred EEEEEecC----CCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCcccc
Confidence 99988863 33333444 4444444 57899999999999998766666665
No 75
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=42.09 E-value=85 Score=35.57 Aligned_cols=155 Identities=12% Similarity=0.177 Sum_probs=96.0
Q ss_pred EEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhh-hhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeE
Q 020609 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (323)
Q Consensus 139 IrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i-~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~Y 217 (323)
||.+-||-.-..+ +.+||+ -.+||-...=... +.-+... .... =+.|| .||..|+-+.-+|..
T Consensus 99 ~r~~~v~g~g~~i----aagsdD-~~vK~~~~~D~s~~~~lrgh~-------apVl---~l~~~-p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 99 IRDLAVSGSGKMI----AAGSDD-TAVKLLNLDDSSQEKVLRGHD-------APVL---QLSYD-PKGNFLAVSSCDGKV 162 (933)
T ss_pred ceEEEEecCCcEE----EeecCc-eeEEEEeccccchheeecccC-------Ccee---eeeEc-CCCCEEEEEecCceE
Confidence 6677777654444 456777 4556654431111 1000001 1111 14454 589999999999999
Q ss_pred EEEeccCcEEEEEecc----cce--eeEEEc------CCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccC--Ccc
Q 020609 218 KVFDLKNYTMLYSISD----KNV--QEIKIS------PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN--KKV 283 (323)
Q Consensus 218 rVfdlknYs~LYsIsd----e~V--qEIkIS------~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~s--k~i 283 (323)
+|||+.+-++...+.+ .++ .+|... +|.+++ -++.+. +++++..+++++..+--.++++ ..+
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~--~~~d~~--Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV--PPVDNT--VKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe--eccCCe--EEEEccCCceeheeecccccccceEEE
Confidence 9999999987766642 222 233332 355533 233333 5899999999999776555555 344
Q ss_pred hhhhhccceeEEEecCCceeEEeccccceee
Q 020609 284 DFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 284 qFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
+| -.-+.||-----++-+.|||+-+++-.|
T Consensus 239 ~w-sPnG~YiAAs~~~g~I~vWnv~t~~~~~ 268 (933)
T KOG1274|consen 239 QW-SPNGKYIAASTLDGQILVWNVDTHERHE 268 (933)
T ss_pred EE-cCCCcEEeeeccCCcEEEEecccchhcc
Confidence 53 3448888888889999999999865543
No 76
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=41.15 E-value=78 Score=35.48 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=30.6
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCC
Q 020609 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPG 244 (323)
Q Consensus 200 FDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~G 244 (323)
+|=-+..+++.++..+..++|+-++.+|+=.|...-+.--++.||
T Consensus 379 l~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpg 423 (888)
T KOG0306|consen 379 LCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPG 423 (888)
T ss_pred EEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCC
Confidence 444566778888888888888888888877777443333333333
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.53 E-value=3.6e+02 Score=28.52 Aligned_cols=178 Identities=15% Similarity=0.117 Sum_probs=107.5
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhh-------
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR------- 177 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~------- 177 (323)
-.++++=+..|.-..+|.++.+.++.+..++..=|-+|=.| .++++ +.=+|..|-..++|.
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~ls---------sGsr~~~I~~~dvR~~~~~~~~ 296 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLS---------SGSRDGKILNHDVRISQHVVST 296 (484)
T ss_pred CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEE---------EecCCCcEEEEEEecchhhhhh
Confidence 45677888899999999999999999999888888888877 33333 222333333222222
Q ss_pred ----------------------CCCCCCCcceeecccCCCCeEEecCCCc--eEEEEecC------------CCeEEEEe
Q 020609 178 ----------------------GKPDAGFALFESESLKWPGFVEFDDVNG--KVLTYSAQ------------DSIYKVFD 221 (323)
Q Consensus 178 ----------------------Gk~~~g~~LFe~~~L~~PgFVEFDdvN~--kilty~aq------------~~~YrVfd 221 (323)
|-.|...-+|..-.... =.-|++-++ |+++.+|. |++.|+||
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP--KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc--cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 22222223333311121 233444444 55666665 89999999
Q ss_pred ccCcEEEEEecc----------cceeeEEEc----CCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh
Q 020609 222 LKNYTMLYSISD----------KNVQEIKIS----PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (323)
Q Consensus 222 lknYs~LYsIsd----------e~VqEIkIS----~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE 287 (323)
-.+=.++=+|.. ++..||-.+ ++-+.+-.-|+ .-++..+..|+..+|.-...
T Consensus 375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~S------------ 440 (484)
T KOG0305|consen 375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRVLYLALS------------ 440 (484)
T ss_pred cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcceeEEEEEC------------
Confidence 886555444431 233344433 22222222222 34666677777776663332
Q ss_pred hccceeEEEecCCceeEEecccc
Q 020609 288 QFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 288 ~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
..+|++.+=--|++|+.|++.+.
T Consensus 441 Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 441 PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCEEEEecccCcEEeccccCC
Confidence 34899999999999999999884
No 78
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=40.09 E-value=2e+02 Score=28.77 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=91.3
Q ss_pred cceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 96 S~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
|+|.+||.- +-=++.-.+||--.++|..++...|.|=|.+++-|+||=.-..-.-|+-+. +.=.|..-.+-
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-------nkG~cyvW~l~ 197 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-------NKGNCYVWRLL 197 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-------CCccEEEEEcc
Confidence 788888865 555677789999999999999999999999999999997766444443322 11234333211
Q ss_pred hhhhCCCCCCCcceee-cc-cCCCCeEEec--CCCceEEEEecCCCeEEEEeccCcEEEEEecccc----eeeEEEc-CC
Q 020609 174 YIRRGKPDAGFALFES-ES-LKWPGFVEFD--DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN----VQEIKIS-PG 244 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~-~~-L~~PgFVEFD--dvN~kilty~aq~~~YrVfdlknYs~LYsIsde~----VqEIkIS-~G 244 (323)
- ++.- ..|+. +. -.|-|++-=| -..+|-|+.+..|.+.+||+..++ +.-+..-+- +=+--+| +|
T Consensus 198 ~---~~~~---s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg 270 (311)
T KOG0315|consen 198 N---HQTA---SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADG 270 (311)
T ss_pred C---CCcc---ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCc
Confidence 0 1110 01110 00 0112222111 123688888999999999999998 333332111 1122222 44
Q ss_pred EEEEEEecCCCeeeEEEEEeecCceee
Q 020609 245 IMLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 245 imll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
-.|++.... .-.+|.+.++|+..+
T Consensus 271 ~YlvTassd---~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 271 EYLVTASSD---HTARLWDLSAGKEVR 294 (311)
T ss_pred cEEEecCCC---CceeecccccCceee
Confidence 443332222 345667777776554
No 79
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=39.39 E-value=63 Score=20.59 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.2
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEE
Q 020609 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVF 220 (323)
Q Consensus 192 L~~PgFVEFDdvN~kilty~aq~~~YrVf 220 (323)
|.+|.-+-.| .+|.|...|......++|
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4688899999 899999989888777665
No 80
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=39.30 E-value=25 Score=35.75 Aligned_cols=28 Identities=36% Similarity=0.775 Sum_probs=25.1
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEecc
Q 020609 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 223 (323)
Q Consensus 190 ~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlk 223 (323)
+++.|-|||||| .-||+-||.||++|..
T Consensus 258 ~si~htGlveve------fK~D~RDGs~KlldvN 285 (415)
T COG3919 258 ESIEHTGLVEVE------FKYDPRDGSYKLLDVN 285 (415)
T ss_pred HhhcccceEEEE------EEecCCCCceeEEeec
Confidence 788999999998 5799999999999864
No 81
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=39.13 E-value=2.8e+02 Score=29.35 Aligned_cols=125 Identities=22% Similarity=0.354 Sum_probs=82.6
Q ss_pred ccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCC---
Q 020609 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--- 180 (323)
Q Consensus 104 a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~--- 180 (323)
|..+++.-..--.-..+|.+||+-+-.| .+..+|-|+=+|.+-.-+.| .++|. |.|.+ +.|+|++
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali~l--~hpd~i~S~sfn~dGs~l~T---tckDK----kvRv~---dpr~~~~v~e 210 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALITL--DHPDMVYSMSFNRDGSLLCT---TCKDK----KVRVI---DPRRGTVVSE 210 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceeeec--CCCCeEEEEEeccCCceeee---ecccc----eeEEE---cCCCCcEeee
Confidence 4555555444556678999999965554 49999999999986655555 33444 55555 5555554
Q ss_pred ---CCC----CcceeecccCCCCeEEecCCCceEEEEe---cCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEE
Q 020609 181 ---DAG----FALFESESLKWPGFVEFDDVNGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIF 250 (323)
Q Consensus 181 ---~~g----~~LFe~~~L~~PgFVEFDdvN~kilty~---aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~ 250 (323)
++| +.+|- .||+|.|-- ..+.-|-.||-+|.+.= =-.||+-=|+|+|+=++
T Consensus 211 ~~~heG~k~~Raifl--------------~~g~i~tTGfsr~seRq~aLwdp~nl~eP-----~~~~elDtSnGvl~PFy 271 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFL--------------ASGKIFTTGFSRMSERQIALWDPNNLEEP-----IALQELDTSNGVLLPFY 271 (472)
T ss_pred cccccCCCcceeEEe--------------ccCceeeeccccccccceeccCcccccCc-----ceeEEeccCCceEEeee
Confidence 444 22332 244444421 23667889999998832 22466777999999999
Q ss_pred ecCCCeeeE
Q 020609 251 TKASGHVPL 259 (323)
Q Consensus 251 q~~~~~iPl 259 (323)
.+-.++++|
T Consensus 272 D~dt~ivYl 280 (472)
T KOG0303|consen 272 DPDTSIVYL 280 (472)
T ss_pred cCCCCEEEE
Confidence 999999886
No 82
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=38.86 E-value=3.2e+02 Score=28.85 Aligned_cols=131 Identities=15% Similarity=0.275 Sum_probs=79.3
Q ss_pred hhCCCCCCCcceee---cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc---CCEEEEE
Q 020609 176 RRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS---PGIMLLI 249 (323)
Q Consensus 176 ~~Gk~~~g~~LFe~---~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS---~Gimll~ 249 (323)
+.|++++..|+|.. -.|- +.+|.-|+-++|-..+|...+||..-+=-+.-.++ |-|.|..=- =|+| .
T Consensus 66 k~Gr~d~~~P~v~GHt~~vLD----i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V--~ 138 (472)
T KOG0303|consen 66 KTGRMDASYPLVCGHTAPVLD----IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-EPVVELYGHQRRVGLV--Q 138 (472)
T ss_pred cccccCCCCCCccCccccccc----cccCccCCceeecCCCCceEEEEECCCcccccCcc-cceEEEeecceeEEEE--e
Confidence 67999999999986 2222 56788999999999999999999864332222222 222222211 1222 2
Q ss_pred EecC--------CCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 250 FTKA--------SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 250 ~q~~--------~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
.-|+ ..---++|.+..||+.+..+.|.-- ---+.| --=+++|----++..++|||-+..++...
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~-i~S~sf-n~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDM-VYSMSF-NRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeecCCCCe-EEEEEe-ccCCceeeeecccceeEEEcCCCCcEeee
Confidence 2222 2333468999999998876553100 000111 01134444555899999999998877543
No 83
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=38.54 E-value=73 Score=23.70 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=24.9
Q ss_pred EEEEeccCcEEEEEecccceeeEEEcCCEEEE
Q 020609 217 YKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 248 (323)
Q Consensus 217 YrVfdlknYs~LYsIsde~VqEIkIS~Gimll 248 (323)
.+||-.+.+..+|.|.-++=-+|+++++|-++
T Consensus 49 ~~~~~~~~~~~~~~i~t~~g~~i~~T~~H~~~ 80 (81)
T TIGR01445 49 VVVWKRRAEGKLIRIKTENGREIKATPDHPFL 80 (81)
T ss_pred eEEEEecCCCcEEEEEeCCCCEEEECCCCccc
Confidence 35788777778888888887888888887654
No 84
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=38.53 E-value=95 Score=33.27 Aligned_cols=91 Identities=19% Similarity=0.118 Sum_probs=58.4
Q ss_pred CCCCeEEecCCCceEEEEecCCCeE--EEEeccCcE--EEEEecccceeeEEEcCC-EEEEEEecCCCeeeEEEEEeecC
Q 020609 193 KWPGFVEFDDVNGKVLTYSAQDSIY--KVFDLKNYT--MLYSISDKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 193 ~~PgFVEFDdvN~kilty~aq~~~Y--rVfdlknYs--~LYsIsde~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG 267 (323)
+|||=|.=+--+.+.--...-+..| -+|+.+.=. +.+.-..+.++-+-++|. -||++.- =-+++++|+|+
T Consensus 100 ~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~~~k 174 (541)
T KOG4547|consen 100 KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDIETK 174 (541)
T ss_pred CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-----ceEEEEEccCc
Confidence 4555544333333333333333333 347766554 778888888999999855 4444332 35899999999
Q ss_pred ceeeeeeeccccCCcchhhhh
Q 020609 268 TVLKSFNHLLHRNKKVDFIEQ 288 (323)
Q Consensus 268 ~~l~~~~~~L~~sk~iqFiE~ 288 (323)
|.+..|...-..-+-++|.+.
T Consensus 175 evv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred eEEEEecCCCcceEEEEEEEe
Confidence 999999965555667788776
No 85
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=38.09 E-value=2.9e+02 Score=24.61 Aligned_cols=109 Identities=13% Similarity=0.203 Sum_probs=64.8
Q ss_pred CCCeEEecCCCceEEEEecCCCeEEEEecc--CcEEEEEecccc------------eeeEEEcCCEEEEEEecCCCeeeE
Q 020609 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSISDKN------------VQEIKISPGIMLLIFTKASGHVPL 259 (323)
Q Consensus 194 ~PgFVEFDdvN~kilty~aq~~~YrVfdlk--nYs~LYsIsde~------------VqEIkIS~Gimll~~q~~~~~iPl 259 (323)
-|-.+.|. +..+.. +..+.|-+-|+. +.+.|+..++.. +.=++++++-+|+.++. +
T Consensus 140 ~~~~i~~~--~~~i~v--~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~------~ 209 (275)
T PF00780_consen 140 PPSSIAFL--GNKICV--GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDN------I 209 (275)
T ss_pred CcEEEEEe--CCEEEE--EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecc------e
Confidence 35566666 333333 225668888887 444666555543 33344555555555432 2
Q ss_pred EEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 260 kIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
-++==.+|++..... +.=+..++.+....-||+.=.++. +.|+|+.+.++..+
T Consensus 210 g~fv~~~G~~~r~~~--i~W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 210 GVFVNKNGEPSRKST--IQWSSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQT 262 (275)
T ss_pred EEEEcCCCCcCcccE--EEcCCchhEEEEECCEEEEECCCE-EEEEECcCCcEEEE
Confidence 333333666555222 222445666777888999988866 99999999998764
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=36.69 E-value=61 Score=33.71 Aligned_cols=111 Identities=26% Similarity=0.309 Sum_probs=70.2
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEec--ccceeeEEEcCCEE--EEEEecCCCeeeEEEEEe-------
Q 020609 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIKISPGIM--LLIFTKASGHVPLKILSI------- 264 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~~YrVfdlknYs-~LYsIs--de~VqEIkIS~Gim--ll~~q~~~~~iPlkIlsI------- 264 (323)
.++|..-|+-|||--..|++..+|||+|.. .||+.+ +.+|-.+--||+.= |+..---.- +.+.|+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r---l~vWDls~ig~eq 353 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR---LNVWDLSRIGEEQ 353 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc---EEEEecccccccc
Confidence 578999999999999999999999999998 777776 35677777776542 221111111 122222
Q ss_pred -----ecCceeeeeeeccccCCcchhhhhccceeEEEe--cCCceeEEecccc
Q 020609 265 -----EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDESNS 310 (323)
Q Consensus 265 -----edG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQ--E~~~LqI~Dl~~~ 310 (323)
++|-+=.-|.|-=|..+=.||==-=+|--.|=- |+..||||.+...
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 122222236665565555565444445444443 8899999998743
No 87
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=35.55 E-value=1.7e+02 Score=30.33 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred EecCCCceEEEEecCCCeEEEEeccCcEEEEEec------------------------ccceeeEEEcCCEEEEEEe---
Q 020609 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------------------------DKNVQEIKISPGIMLLIFT--- 251 (323)
Q Consensus 199 EFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs------------------------de~VqEIkIS~Gimll~~q--- 251 (323)
||=+.-.|++|-.- +|+.++||+|+=+.+..++ +-.+.=.-.+-|-|+....
T Consensus 197 ~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~ 275 (399)
T KOG0296|consen 197 EFIPDGKRILTGYD-DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV 275 (399)
T ss_pred cccCCCceEEEEec-CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC
Q ss_pred -----------------cCCCeeeEEEEEeecCceee------eeeeccccCCcchhhhhcc-ceeEEEecCCceeEEec
Q 020609 252 -----------------KASGHVPLKILSIEDGTVLK------SFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDE 307 (323)
Q Consensus 252 -----------------~~~~~iPlkIlsIedG~~l~------~~~~~L~~sk~iqFiE~f~-EkLLIKQE~~~LqI~Dl 307 (323)
|-.+.+||.-+.--||++.- .+.|...+...|-=+--.| .|||----|..+++||.
T Consensus 276 ~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 276 PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDA 355 (399)
T ss_pred ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeec
Q ss_pred cccce
Q 020609 308 SNSGC 312 (323)
Q Consensus 308 ~~~~l 312 (323)
|+.++
T Consensus 356 RtG~l 360 (399)
T KOG0296|consen 356 RTGQL 360 (399)
T ss_pred cccce
No 88
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=34.77 E-value=4e+02 Score=27.29 Aligned_cols=107 Identities=17% Similarity=0.271 Sum_probs=62.2
Q ss_pred EecCCCceEEEEecCCCeEEEEeccCc-----EEEEEecccceeeEEEcCCEE-EEEEecCC-CeeeEEEEEeecCceee
Q 020609 199 EFDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSISDKNVQEIKISPGIM-LLIFTKAS-GHVPLKILSIEDGTVLK 271 (323)
Q Consensus 199 EFDdvN~kilty~aq~~~YrVfdlknY-----s~LYsIsde~VqEIkIS~Gim-ll~~q~~~-~~iPlkIlsIedG~~l~ 271 (323)
..+++.-+-+.-+.=|-+-.|||+..= .-.----|++|.+|..+.|-. ++..-++. ++==+.|=+++-.++++
T Consensus 157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 445555555666777889999999873 223334689999999985332 22222222 22222333344444444
Q ss_pred ee-----e-ecc-ccCCcchhhhhccceeEEEecCCceeEEeccccc
Q 020609 272 SF-----N-HLL-HRNKKVDFIEQFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 272 ~~-----~-~~L-~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
+= . ++| ....++.||--|. ++...++|+|+|...
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~------~dS~~V~iLDiR~P~ 277 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFA------MDSNKVVILDIRVPC 277 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhh------cCCceEEEEEecCCC
Confidence 11 1 122 2345677777665 467789999998754
No 89
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=33.25 E-value=2.2e+02 Score=27.41 Aligned_cols=52 Identities=23% Similarity=0.467 Sum_probs=33.8
Q ss_pred cCcEEEEEecccc--------------eeeEEEc-CCEEEEEE-ecCCC-----------ee---eEEEEEeecCceeee
Q 020609 223 KNYTMLYSISDKN--------------VQEIKIS-PGIMLLIF-TKASG-----------HV---PLKILSIEDGTVLKS 272 (323)
Q Consensus 223 knYs~LYsIsde~--------------VqEIkIS-~Gimll~~-q~~~~-----------~i---PlkIlsIedG~~l~~ 272 (323)
.+|+.++.++..+ .+|+.|. +|.+|+.. +++.. .| -+--++|+||++|-+
T Consensus 32 ~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~Tgevlfe 111 (299)
T PF14269_consen 32 SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFE 111 (299)
T ss_pred CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEE
Confidence 3577777777776 9999994 77776622 22211 11 134568899999997
Q ss_pred ee
Q 020609 273 FN 274 (323)
Q Consensus 273 ~~ 274 (323)
..
T Consensus 112 W~ 113 (299)
T PF14269_consen 112 WS 113 (299)
T ss_pred EE
Confidence 76
No 90
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=33.21 E-value=3.6e+02 Score=25.26 Aligned_cols=69 Identities=12% Similarity=0.253 Sum_probs=49.9
Q ss_pred eEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcCCEEEEEEecCCCeeeEEE--------EEeecCceeeeeeec
Q 020609 206 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKI--------LSIEDGTVLKSFNHL 276 (323)
Q Consensus 206 kilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~Gimll~~q~~~~~iPlkI--------lsIedG~~l~~~~~~ 276 (323)
+.++|++ +..|+|..-.+|...-++. +|.|+.+-+.|..= ....+..+++-+|= |.|-|-++.+.|.+.
T Consensus 31 ~~~~Y~p-~~v~~V~~~~g~~T~I~f~~gE~I~~v~~GDt~~-W~v~~~~n~i~IKP~~~~~~TNl~V~TnkR~Y~f~L~ 108 (243)
T TIGR02781 31 RTVVYNP-DDVVRVVTSYGYSTTIEFADDETIKTVAVGDSKA-WEVTPNGNKLFIKPTEKDWKTNMTVVTNKRSYVFDLT 108 (243)
T ss_pred EEEEcCC-CCEEEEEEECCEEEEEEeCCCCEEEEecccCCcc-eEEEcCCCEEEEEECCCCCCceEEEEECCeEEEEEEE
Confidence 4566665 5699999999999999998 78899888876533 33345567777774 666677777777643
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=33.13 E-value=1.3e+02 Score=31.45 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=75.5
Q ss_pred cccceeEEeec----cchhhhhhccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeee
Q 020609 94 KRSKIIEIVAA----RDIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (323)
Q Consensus 94 kRS~V~EIv~a----~diI~aL~~sG~c~af~r~tn~~iC~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr 168 (323)
.-+.+.|=|+. +++....+..|.-..+|..+|+--|-.+. .++-=|.|+=+|..|+.||- ...+|.
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilA--T~S~D~------- 295 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILA--TGSADK------- 295 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEE--eccCCC-------
Confidence 33455555554 46666677778888888875543344443 33456799999999977665 333454
Q ss_pred eeehhhhhhCCCCCCCccee---ecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcE
Q 020609 169 STRIEYIRRGKPDAGFALFE---SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (323)
Q Consensus 169 ~~~i~~i~~Gk~~~g~~LFe---~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs 226 (323)
++.+=|+| +++..---|+ .++++ |||..-|..||+=++.|+-..|||+.--.
T Consensus 296 tV~LwDlR--nL~~~lh~~e~H~dev~~----V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 296 TVALWDLR--NLNKPLHTFEGHEDEVFQ----VEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred cEEEeech--hcccCceeccCCCcceEE----EEeCCCCCceeEecccCCcEEEEeccccc
Confidence 33333444 2222211222 34454 89999999999999999999999997543
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.09 E-value=2.1e+02 Score=28.65 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.7
Q ss_pred EEecCCCceEEEEecCCCeEEEEecc
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLK 223 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlk 223 (323)
+....++++++.-+.=|++.|.||+.
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred eccccccceeEEeeccCCceEeecCC
Confidence 56678999999988889999999975
No 93
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=32.84 E-value=66 Score=33.28 Aligned_cols=73 Identities=15% Similarity=0.392 Sum_probs=57.7
Q ss_pred EEecCCCceEEEEecCCCeEEEEecc------CcEEEEEeccc------------ceeeEEEcCC-EEEEEEecCCCeee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDK------------NVQEIKISPG-IMLLIFTKASGHVP 258 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlk------nYs~LYsIsde------------~VqEIkIS~G-imll~~q~~~~~iP 258 (323)
-||-...--+..|+...|+.|.-||+ .++.||+-+.+ -|-+||+|+. -.+| +..++.
T Consensus 219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil----sRDylt 294 (433)
T KOG1354|consen 219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL----SRDYLT 294 (433)
T ss_pred hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE----Eeccce
Confidence 47888889999999999999999999 67788876633 2568899865 3323 467899
Q ss_pred EEEEEe-ecCceeeeee
Q 020609 259 LKILSI-EDGTVLKSFN 274 (323)
Q Consensus 259 lkIlsI-edG~~l~~~~ 274 (323)
+||.|+ ++.+++..+.
T Consensus 295 vk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYP 311 (433)
T ss_pred eEEEeccccCCcceEEe
Confidence 999999 7888877654
No 94
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=32.39 E-value=3.4e+02 Score=29.66 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEec
Q 020609 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 212 (323)
Q Consensus 133 ~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~a 212 (323)
++|. |-|+=+|++|. |.+.| .+.|.--.++|+--++-.+-+=..+.|..-|+---.+. ..-+..-.
T Consensus 33 ~~pg--~~s~~w~~~n~-lvvas-~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~----------S~y~~sgG 98 (673)
T KOG4378|consen 33 AEPG--DFSFNWQRRNF-LVVAS-MAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ----------SLYEISGG 98 (673)
T ss_pred CCCc--ceeeeccccce-EEEee-cCCceeEEEecccCCCCccceeeccccchHHHHhhhhc----------ceeeeccC
Confidence 3444 78888999888 66655 34555566666544433331111122222222110110 12233346
Q ss_pred CCCeEEEEeccC---------c-----EEEEEecccceeeEEEcCCEEEEEEecCCCeeeEEE-----------------
Q 020609 213 QDSIYKVFDLKN---------Y-----TMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKI----------------- 261 (323)
Q Consensus 213 q~~~YrVfdlkn---------Y-----s~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkI----------------- 261 (323)
+.++.++|||+- - -+.|.-.||.+.-+.+++.+++.=..-....-|+++
T Consensus 99 ~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 99 QSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred cCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence 789999999862 1 167999999999999999988653332222223221
Q ss_pred -EEee--cCceee-eeeeccccCCcchhhhh------------ccceeEEEe-cCCceeEEecccccee
Q 020609 262 -LSIE--DGTVLK-SFNHLLHRNKKVDFIEQ------------FNEKLLVKQ-ENENLQILDESNSGCL 313 (323)
Q Consensus 262 -lsIe--dG~~l~-~~~~~L~~sk~iqFiE~------------f~EkLLIKQ-E~~~LqI~Dl~~~~l~ 313 (323)
|.+- +|.+.- +. ..++...-|.|+ .||+||+-- =+..|.|||.++...+
T Consensus 179 lL~~asd~G~VtlwDv---~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDV---QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred eeEeeccCCeEEEEec---cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 1111 333222 11 134555566665 489999987 6889999999987654
No 95
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.99 E-value=2.3e+02 Score=28.30 Aligned_cols=107 Identities=15% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEE--EEecccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeeeeecccc
Q 020609 203 VNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (323)
Q Consensus 203 vN~kilty~aq~~~YrVfdlknYs~L--YsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~ 279 (323)
+.|+-...+..|.+.|.|+-.-=.+| |+=...+|.+.-.+ |+.=+ -. -..-=-..+++.+||+.+..|.--+.+
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf-~s--~GgDk~v~vwDV~TGkv~Rr~rgH~aq 103 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKF-AS--CGGDKAVQVWDVNTGKVDRRFRGHLAQ 103 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccc-cc--CCCCceEEEEEcccCeeeeecccccce
Confidence 44555555788999999986655544 44444555555444 22211 11 112224568999999999999843677
Q ss_pred CCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 280 NKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 280 sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
-.-|+|=|-. +-++=--=+..+|.||+|++.-.
T Consensus 104 VNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 104 VNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred eeEEEecCcc-eEEEeccccceeEEEEcccCCCC
Confidence 7777765531 12222336789999999998643
No 96
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=31.46 E-value=5.9e+02 Score=26.13 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=98.9
Q ss_pred cccceeEEeeccchhhhhhccccceeeecc-cccEEEEEeC-C-CCceEEEEEeecCCCeEEEEEeEecCCCceeeeeee
Q 020609 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRE-TNQRICFLNV-T-ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (323)
Q Consensus 94 kRS~V~EIv~a~diI~aL~~sG~c~af~r~-tn~~iC~LN~-s-~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~ 170 (323)
-+++|+.|-..+|-|++++.+-+ -+|.=- +=+.+|.+-. + |.- .=++-... |.+++. |-+.||-.+
T Consensus 93 f~~~I~~V~l~r~riVvvl~~~I-~VytF~~n~k~l~~~et~~NPkG-lC~~~~~~-~k~~La--------fPg~k~Gqv 161 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLENKI-YVYTFPDNPKLLHVIETRSNPKG-LCSLCPTS-NKSLLA--------FPGFKTGQV 161 (346)
T ss_pred eccceeeEEEcCCeEEEEecCeE-EEEEcCCChhheeeeecccCCCc-eEeecCCC-CceEEE--------cCCCccceE
Confidence 47899999999888888777644 344332 2233332211 1 111 11111111 234443 567888888
Q ss_pred ehhhhhhCCCCCCCc------ceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec----ccceeeEE
Q 020609 171 RIEYIRRGKPDAGFA------LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIK 240 (323)
Q Consensus 171 ~i~~i~~Gk~~~g~~------LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs----de~VqEIk 240 (323)
-+.++..-++++... --....|.-+|- +|-|++.++--.|+||-.+=++|+++- .-++..|-
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--------~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGT--------LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--------EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 888887666653211 112356666663 567777777778999999999999985 46889999
Q ss_pred EcCCEEEEEEecCCCeeeEEEEEeecCceee
Q 020609 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 241 IS~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
+||..-.+--.-.+++ ++||+|++-+...
T Consensus 234 FSp~~s~LavsSdKgT--lHiF~l~~~~~~~ 262 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGT--LHIFSLRDTENTE 262 (346)
T ss_pred eCCCccEEEEEcCCCe--EEEEEeecCCCCc
Confidence 9977766655555655 6899999755433
No 97
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=31.03 E-value=4.9e+02 Score=28.01 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=72.2
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~ 275 (323)
+.-+.--+-+++..+-|++.|+||...=.++..+- -++|..+..||.-=.+..--... -+.|.++++|+..++..-
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg--~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG--CVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC--eeEeccccchheeEeecC
Confidence 34444456677778889999999999999999983 46788888884333222222222 257899999999986531
Q ss_pred ccccCCcchhhhhccceeEEEecCCceeEEecc
Q 020609 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDES 308 (323)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (323)
- ..=.++-|=+ =+.||-++|.+++..++|+|
T Consensus 493 ~-~~Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 T-GGIFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred C-CeEEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 0 0001111111 25799999999999999987
No 98
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=30.68 E-value=36 Score=34.45 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=29.1
Q ss_pred CCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEE
Q 020609 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIK 240 (323)
Q Consensus 202 dvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIk 240 (323)
|.|.... .++++...||+++..+.|+|.|-+.|-+|
T Consensus 183 dgnqv~t---t~d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 183 DGNQVAT---TSDSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred ccceEEE---eCCCcEEEEEccchhhhcchhhhhcceee
Confidence 4555444 58999999999999999999999866544
No 99
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=30.24 E-value=1.9e+02 Score=28.82 Aligned_cols=90 Identities=21% Similarity=0.337 Sum_probs=55.9
Q ss_pred CCCeEEEEeccCcEEEEEecccceeeEEE--c--CCEEEEEEecCCC-----eee--EEEEEeecCceeeeeeeccccCC
Q 020609 213 QDSIYKVFDLKNYTMLYSISDKNVQEIKI--S--PGIMLLIFTKASG-----HVP--LKILSIEDGTVLKSFNHLLHRNK 281 (323)
Q Consensus 213 q~~~YrVfdlknYs~LYsIsde~VqEIkI--S--~Gimll~~q~~~~-----~iP--lkIlsIedG~~l~~~~~~L~~sk 281 (323)
++.-||-..+.++ -.++.+ ++.+.++ + +|.++++..+++- .-| +.|++. .|+.+.++...-.+--
T Consensus 9 ~d~~Yrk~~ly~m--~W~~~~-~l~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv 84 (410)
T PF04841_consen 9 GDVYYRKRELYSM--SWSLKD-DLSDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIV 84 (410)
T ss_pred CCEEEEEEEeccC--CCCccc-cccceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEE
Confidence 4455776666543 344432 3434343 3 5888888777322 223 444443 6888888775433334
Q ss_pred cchhhhhccceeEEEecCCceeEEecc
Q 020609 282 KVDFIEQFNEKLLVKQENENLQILDES 308 (323)
Q Consensus 282 ~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (323)
.+.|-+ +|.|++=+++...++||+.
T Consensus 85 ~~~wt~--~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 85 GMGWTD--DEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEECC--CCeEEEEEcCCEEEEEeCC
Confidence 445544 7899999999999999994
No 100
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=29.64 E-value=4.8e+02 Score=24.56 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=56.7
Q ss_pred CCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccc--cCCcchhhhhcc
Q 020609 213 QDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH--RNKKVDFIEQFN 290 (323)
Q Consensus 213 q~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~--~sk~iqFiE~f~ 290 (323)
.++....||+++-+.++..+.......-+.+|.+.+.. . . =-+..++..||+.+-+...+-. .+.++ .-+
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~-~-~--G~l~~~d~~tG~~~W~~~~~~~~~~ssp~----i~g 320 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTD-A-D--GVVVALDRRSGSELWKNDELKYRQLTAPA----VVG 320 (377)
T ss_pred cCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEEC-C-C--CeEEEEECCCCcEEEccccccCCccccCE----EEC
Confidence 34555666666666666554333334445666664332 1 1 2367788889998876632111 12222 257
Q ss_pred ceeEEEecCCceeEEecccccee
Q 020609 291 EKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 291 EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
++|++--++..|.++|..+.+++
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEE
Confidence 89999888889999999888775
No 101
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=29.52 E-value=58 Score=36.58 Aligned_cols=29 Identities=34% Similarity=0.716 Sum_probs=0.0
Q ss_pred ecCCCceEEEEecCCCeEEEEeccC-------cEEEE
Q 020609 200 FDDVNGKVLTYSAQDSIYKVFDLKN-------YTMLY 229 (323)
Q Consensus 200 FDdvN~kilty~aq~~~YrVfdlkn-------Ys~LY 229 (323)
||++|.|+..-=-.-+.| |||++| |++||
T Consensus 332 Fdet~~klscVYndhSlY-vWDvrD~~kvgk~~s~ly 367 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLY-VWDVRDVNKVGKCSSMLY 367 (1080)
T ss_pred ecCCCceEEEEEcCceEE-EEeccccccccceeeeee
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.92 E-value=7.5e+02 Score=26.52 Aligned_cols=182 Identities=15% Similarity=0.265 Sum_probs=114.3
Q ss_pred hhhhhhccccceeeecccccEEE-EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCc
Q 020609 107 IVFALAQSGVCAAFCRETNQRIC-FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC-~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~ 185 (323)
+++|=-.+|.-.+|| .+-+.|- .++ .+..=||.++|....+++. +.++|+ ..-|-..++--|
T Consensus 82 LlaaGD~sG~V~vfD-~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l---~s~sDd-~v~k~~d~s~a~----------- 144 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFD-MKSRVILRQLY-AHQAPVHVTKFSPQDNTML---VSGSDD-KVVKYWDLSTAY----------- 144 (487)
T ss_pred EEEccCCcCcEEEec-cccHHHHHHHh-hccCceeEEEecccCCeEE---EecCCC-ceEEEEEcCCcE-----------
Confidence 456677899999999 4444333 344 4455679999988877765 457888 444443332211
Q ss_pred ceeecccCCCCeEE---ecCCCceEEEEecCCCeEEEEeccCc-EEEEEecccceeeEEE--cCCEEEEEEecCCCeeeE
Q 020609 186 LFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISDKNVQEIKI--SPGIMLLIFTKASGHVPL 259 (323)
Q Consensus 186 LFe~~~L~~PgFVE---FDdvN~kilty~aq~~~YrVfdlknY-s~LYsIsde~VqEIkI--S~Gimll~~q~~~~~iPl 259 (323)
. ..+-..|-+||- +=+.|+-|+.=-.=||..|+||.+.- +.++++.+..=-|-.+ .+|..++..-++ .+
T Consensus 145 v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn----~v 219 (487)
T KOG0310|consen 145 V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN----SV 219 (487)
T ss_pred E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC----eE
Confidence 1 446667777774 55677777776666999999999988 8999999776555322 343443333222 36
Q ss_pred EEEEeecCce-eeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEecccccee
Q 020609 260 KILSIEDGTV-LKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 260 kIlsIedG~~-l~~~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
|+.|+-+|-. +.++.. ++|.|-=|-. -+..||=--=|...+|||+.|-+.+
T Consensus 220 kVWDl~~G~qll~~~~~---H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFN---HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred EEEEecCCceehhhhhc---ccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence 8999986544 333321 2444332211 2256666667788899998877664
No 103
>COG4568 Rof Transcriptional antiterminator [Transcription]
Probab=28.78 E-value=70 Score=26.56 Aligned_cols=55 Identities=35% Similarity=0.434 Sum_probs=38.3
Q ss_pred eeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeeeccccee
Q 020609 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLELSRRACN 321 (323)
Q Consensus 256 ~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~~~~~~ 321 (323)
++|++ |.+.+|+++..-...+++++++ |||.+.+||+.. -|+.-+|+..+-.+|.
T Consensus 23 hl~l~-L~lkdGev~~a~A~d~~~r~k~-------Eyl~v~~eget~---~LrlD~i~s~S~~~~g 77 (84)
T COG4568 23 HLPLT-LELKDGEVLQAKASDLQRRKKV-------EYLAVEVEGETR---ELRLDKITSFSHPEIG 77 (84)
T ss_pred hceEE-EEEcCCeEEEEEehhhhhhcce-------eEEEEEecCcee---EEehhhhhhcccceee
Confidence 34554 6889999998777778888854 699999999874 3455455555544443
No 104
>PRK01742 tolB translocation protein TolB; Provisional
Probab=26.84 E-value=6.2e+02 Score=24.89 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=56.2
Q ss_pred CceEEEEecC---CCeEEEEeccCcE--EEEEecccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeeeeecc
Q 020609 204 NGKVLTYSAQ---DSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (323)
Q Consensus 204 N~kilty~aq---~~~YrVfdlknYs--~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L 277 (323)
+|+-++|-.. +....+||+.+-+ .+-... .+...+..| ||-.|++.....+.+-+-++++.+|+...-+.+.
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~- 291 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA- 291 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC-
Confidence 4666666443 2457889987643 343333 345568888 4555555444445566777888888754322211
Q ss_pred ccCCcchhhhhccceeEEEe-cCCceeEEecc
Q 020609 278 HRNKKVDFIEQFNEKLLVKQ-ENENLQILDES 308 (323)
Q Consensus 278 ~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~ 308 (323)
.....+.|-- =+++|++-- .+...+||++.
T Consensus 292 ~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 292 GNNTEPSWSP-DGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred CCcCCEEECC-CCCEEEEEECCCCCceEEEEE
Confidence 1122334332 255666543 45677888874
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.95 E-value=1.7e+02 Score=30.33 Aligned_cols=139 Identities=22% Similarity=0.368 Sum_probs=73.4
Q ss_pred ceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceee--cccCC
Q 020609 117 CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES--ESLKW 194 (323)
Q Consensus 117 c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~--~~L~~ 194 (323)
.-.||.+||+.+-.|-.-+.|+-|+-=+ -+.-|+..| |-+ + +..+=|.|+.-. .-..|+. +....
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstH--ptQrLVvTs---SrD-t-----TFRLWDFReaI~--sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTH--PTQRLVVTS---SRD-T-----TFRLWDFREAIQ--SVAVFQGHTDTVTS 362 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccC--CcceEEEEe---ccC-c-----eeEeccchhhcc--eeeeecccccceeE
Confidence 4467778888666666666676555322 223344433 222 1 222223332211 1224442 22211
Q ss_pred CCeEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEec-ccceeeEEEcCCE-EEEEEecCCCeeeEEEEEeecCceee
Q 020609 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 195 PgFVEFDdvN~kilty~aq~~~YrVfdlknYs-~LYsIs-de~VqEIkIS~Gi-mll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
+-|. +..+|+. ...|.+.|||||+|+- .|-.|- |--+-.|-||.|. ++.+ ++.---+.|+++ +|..|.
T Consensus 363 ---~vF~-~dd~vVS-gSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi---PhDNRqvRlfDl-nG~Rla 433 (481)
T KOG0300|consen 363 ---VVFN-TDDRVVS-GSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI---PHDNRQVRLFDL-NGNRLA 433 (481)
T ss_pred ---EEEe-cCCceee-cCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEe---ccCCceEEEEec-CCCccc
Confidence 1221 3344544 4568899999999996 666653 4556677888777 3322 233334677776 677776
Q ss_pred eeeeccccCC
Q 020609 272 SFNHLLHRNK 281 (323)
Q Consensus 272 ~~~~~L~~sk 281 (323)
.||+++
T Consensus 434 ----RlPrts 439 (481)
T KOG0300|consen 434 ----RLPRTS 439 (481)
T ss_pred ----cCCccc
Confidence 455444
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=25.69 E-value=2.2e+02 Score=29.47 Aligned_cols=99 Identities=22% Similarity=0.371 Sum_probs=65.9
Q ss_pred ccchhhhhhccccceeeecccccEEEEEeCCCCc----eEEEEEeecCCCeEEEEEeEecCCCceeeeeeee---hhhhh
Q 020609 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR---IEYIR 176 (323)
Q Consensus 104 a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dE----vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~---i~~i~ 176 (323)
.-|++++-++.-+-+.||-.|-| ||+-.+||. .|-++=||..-.-++|.| +|.+--|- -.++ ++-|.
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V~Ys~t~~lYvTaS---kDG~Iklw-DGVS~rCv~t~~ 300 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQVRYSSTGSLYVTAS---KDGAIKLW-DGVSNRCVRTIG 300 (430)
T ss_pred CCceEEEecCCCceeEEecccee--EeeecCcccccccceeEEEecCCccEEEEec---cCCcEEee-ccccHHHHHHHH
Confidence 46899999999999999998877 988776665 789999999888888866 44421110 0000 22222
Q ss_pred h--CCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEec
Q 020609 177 R--GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 222 (323)
Q Consensus 177 ~--Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdl 222 (323)
+ |+..-....|+ -|||-+.-+.-|+..|.|.+
T Consensus 301 ~AH~gsevcSa~Ft--------------kn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 301 NAHGGSEVCSAVFT--------------KNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred hhcCCceeeeEEEc--------------cCCeEEeecCCcceeeeeee
Confidence 1 11111122332 48998888999999998864
No 107
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=25.65 E-value=2.8e+02 Score=27.63 Aligned_cols=62 Identities=26% Similarity=0.474 Sum_probs=43.2
Q ss_pred eEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc
Q 020609 156 VYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN 235 (323)
Q Consensus 156 vy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~ 235 (323)
=.+.|+|++..++.. + +....|=. -.|.| -..+.+|+|.-..|..+||||-+ +.||.|+...
T Consensus 23 Rsa~Ddf~si~~kcq----V----pkD~~PQW--Rkl~W-------SpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~ 84 (282)
T PF15492_consen 23 RSAKDDFSSIIGKCQ----V----PKDPNPQW--RKLAW-------SPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM 84 (282)
T ss_pred EeccCCchheeEEEe----c----CCCCCchh--eEEEE-------CCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence 346799998865553 1 11112211 23444 25689999999999999999999 8999999744
No 108
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=25.59 E-value=1.2e+02 Score=31.12 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=43.1
Q ss_pred eeeeccCCCCcccccccccccccceeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEE
Q 020609 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT 153 (323)
Q Consensus 74 ~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlIt 153 (323)
.+|.-++.+...++.+|+ .+..|.. ..++.+..++--..||-.|++.++-++..+ |+.++.|+.++-+.+
T Consensus 92 ~I~kn~~~~~~k~i~~~~-----~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~---vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 92 KIYKNFKNEVVKSIKLPF-----SVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVSA---VKYVIWSDDGELVAL 161 (443)
T ss_dssp EEEETTEE-TT-----SS------EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS-E----EEEEE-TTSSEEEE
T ss_pred EEEEcCccccceEEcCCc-----ccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecCC---CcEEEEECCCCEEEE
Confidence 444445555545665555 5777877 667777788866789999999999999886 899999998777766
Q ss_pred EE
Q 020609 154 VS 155 (323)
Q Consensus 154 vS 155 (323)
++
T Consensus 162 ~t 163 (443)
T PF04053_consen 162 VT 163 (443)
T ss_dssp E-
T ss_pred Ee
Confidence 54
No 109
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=25.55 E-value=5.1e+02 Score=23.84 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=47.4
Q ss_pred CCCeEEecCCCceEEEEecCCCeEEEEeccCcE----EEEEec-ccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecC
Q 020609 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 194 ~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs----~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG 267 (323)
||.=+.|+.-+..+.+.+..++...||++..-. .+=.++ .+.-..+.++ +|-.|+......++|-+-=++-+||
T Consensus 229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 229 WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 555578887666677766678899999985433 122222 2244577787 6667777776667655444444666
Q ss_pred ce
Q 020609 268 TV 269 (323)
Q Consensus 268 ~~ 269 (323)
..
T Consensus 309 ~l 310 (330)
T PRK11028 309 LL 310 (330)
T ss_pred cE
Confidence 54
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.53 E-value=1.1e+02 Score=34.09 Aligned_cols=169 Identities=14% Similarity=0.222 Sum_probs=102.6
Q ss_pred ccEEEEEe-CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceee----cccCCCCeEE
Q 020609 125 NQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES----ESLKWPGFVE 199 (323)
Q Consensus 125 n~~iC~LN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~----~~L~~PgFVE 199 (323)
++..|.+- -.++.-|+||=++..-. ||-.+. .-+++.+=||++||. =+.||.- .++.|==|-|
T Consensus 58 ~kp~~i~S~~~hespIeSl~f~~~E~-Llaags---------asgtiK~wDleeAk~--vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 58 GKPNAITSLTGHESPIESLTFDTSER-LLAAGS---------ASGTIKVWDLEEAKI--VRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred cCCchhheeeccCCcceeeecCcchh-hhcccc---------cCCceeeeehhhhhh--hhhhhccccCcceeeeccceE
Confidence 44444444 45677788877665333 333111 113455557777773 1345542 5666777888
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeE---EEcCCE-EEEEEecCCCeeeEEEEEeecCceeeeeee
Q 020609 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEI---KISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (323)
Q Consensus 200 FDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEI---kIS~Gi-mll~~q~~~~~iPlkIlsIedG~~l~~~~~ 275 (323)
|+ +-=++|..++.||.+-.-|.|.-.. +.+-+ +++|+= .+.- +.. -=-.+|.|.--|+.+++|+.
T Consensus 126 ~~-------a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~--g~e-d~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 126 FF-------ASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVAS--GGE-DNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred Ee-------ccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeec--cCC-cceeeeeccccccccccccc
Confidence 88 2236789999999996666665543 43333 445433 3222 222 12358889889999999983
Q ss_pred ccccCCcchhhhhccceeEEEe--cCCceeEEeccccceeeecccc
Q 020609 276 LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDESNSGCLELSRRA 319 (323)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIKQ--E~~~LqI~Dl~~~~l~ev~~~~ 319 (323)
+.-+++-+|-++-+.|.-- -+..++.|||.+++++-=.+++
T Consensus 195 ---~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~ 237 (825)
T KOG0267|consen 195 ---HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE 237 (825)
T ss_pred ---ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc
Confidence 2556666664444444332 5678999999999998766654
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.22 E-value=2.7e+02 Score=31.43 Aligned_cols=104 Identities=20% Similarity=0.308 Sum_probs=67.7
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcE--EEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeee
Q 020609 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~~YrVfdlknYs--~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
=+.|-.+---||.=-.|||+.|.|||+-=. -.|.=-.|-|-|+++|||- |-+-.+++|+-.|--+-
T Consensus 138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~------------~~~F~s~~dsG~lqlWD 205 (839)
T KOG0269|consen 138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY------------GNKFASIHDSGYLQLWD 205 (839)
T ss_pred eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC------------CceEEEecCCceEEEee
Confidence 356666666777777899999999998544 3444466899999999886 55666666666555444
Q ss_pred eccccCCcchhhh-----------hccceeEEEecCCceeEEeccccce
Q 020609 275 HLLHRNKKVDFIE-----------QFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 275 ~~L~~sk~iqFiE-----------~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
.+.+..=+.+|-- .-.+.|-=--.|+-++|||+.+++.
T Consensus 206 lRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 206 LRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred ccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 3333322222211 1134444445889999999997654
No 112
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=24.01 E-value=5.2e+02 Score=23.01 Aligned_cols=70 Identities=23% Similarity=0.422 Sum_probs=54.3
Q ss_pred CeEEecCCCceEEEEecCCCeEEEE--eccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeee
Q 020609 196 GFVEFDDVNGKVLTYSAQDSIYKVF--DLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (323)
Q Consensus 196 gFVEFDdvN~kilty~aq~~~YrVf--dlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~ 273 (323)
+-+-+|..=.||+|++.+.-.|+|. |...++ |.|- |=.+|..-+.+-.....-|+.+..+.+|+.-...
T Consensus 29 nvFyYDsti~RI~TCc~vrP~Y~v~~~D~~~~s--f~I~-------kn~dG~~~Ft~~e~~~~ep~~l~~l~dgri~~ts 99 (123)
T PF11763_consen 29 NVFYYDSTIKRIVTCCCVRPIYRVYHDDPNKSS--FNII-------KNNDGTYQFTFVESSFSEPLDLHTLSDGRIWFTS 99 (123)
T ss_pred eeEEecCCcceEEEecccccEEEEeecCCCcce--EEEE-------ecCCCcEEEEEcccCCCCcEEEEEecCCcEEEEc
Confidence 4567899999999999999999997 343333 3333 3358997778888888899999999999987765
Q ss_pred e
Q 020609 274 N 274 (323)
Q Consensus 274 ~ 274 (323)
.
T Consensus 100 ~ 100 (123)
T PF11763_consen 100 N 100 (123)
T ss_pred c
Confidence 4
No 113
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=23.65 E-value=1.9e+02 Score=18.09 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=14.4
Q ss_pred EecCCCceEEEEecCCCeEEEEe
Q 020609 199 EFDDVNGKVLTYSAQDSIYKVFD 221 (323)
Q Consensus 199 EFDdvN~kilty~aq~~~YrVfd 221 (323)
.|..- +..++-...|+..+|||
T Consensus 18 ~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 18 AWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEETT-SSEEEEEETTSEEEEEE
T ss_pred EEecc-cccceeeCCCCEEEEEC
Confidence 34444 44444456899999997
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=23.62 E-value=5.2e+02 Score=27.23 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=66.3
Q ss_pred CCceEEEEecCCCeEEEEeccCc---EE-EEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEE---eecCceeeeeee
Q 020609 203 VNGKVLTYSAQDSIYKVFDLKNY---TM-LYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILS---IEDGTVLKSFNH 275 (323)
Q Consensus 203 vN~kilty~aq~~~YrVfdlknY---s~-LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIls---IedG~~l~~~~~ 275 (323)
+-.-+++-+..|+.+|+||.+.= .+ +..-.+-+|-=|--+...=+|..-.-.+++ +|.| ++-|++++.|++
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~--~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTL--SIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceE--EEEEhhhccCCCcceeEEe
Confidence 34456777788999999999987 44 444444444444444333334444445543 3444 346788889984
Q ss_pred ccccCCcchhhhhc---cceeEEEecCCceeEEecc
Q 020609 276 LLHRNKKVDFIEQF---NEKLLVKQENENLQILDES 308 (323)
Q Consensus 276 ~L~~sk~iqFiE~f---~EkLLIKQE~~~LqI~Dl~ 308 (323)
+..+|-=||-. -+-|++--+++-+-||||.
T Consensus 346 ---Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 346 ---HKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ---ccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 25566556655 7888999999999999985
No 115
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=23.14 E-value=5.4e+02 Score=22.92 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=63.3
Q ss_pred CCCeEEEEeccCcEEEE---------------Ee-cccceeeEE----EcCCEEEEEEecCCCeeeEEEEEeecC-----
Q 020609 213 QDSIYKVFDLKNYTMLY---------------SI-SDKNVQEIK----ISPGIMLLIFTKASGHVPLKILSIEDG----- 267 (323)
Q Consensus 213 q~~~YrVfdlknYs~LY---------------sI-sde~VqEIk----IS~Gimll~~q~~~~~iPlkIlsIedG----- 267 (323)
.|+...++||.+....+ .+ ..++++-+. ..++..|++..+. -+.|+...++
T Consensus 54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk----~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK----KILIYEWNDPRNSFS 129 (275)
T ss_pred cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC----EEEEEEEECCccccc
Confidence 35777788888777666 23 224566666 3345555555555 5666776653
Q ss_pred ceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeeec
Q 020609 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLELS 316 (323)
Q Consensus 268 ~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~ 316 (323)
..++++.. + .++..|.-++.+|.|--+++ ..++|+.+....++.
T Consensus 130 ~~~ke~~l--p--~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 130 KLLKEISL--P--DPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred ceeEEEEc--C--CCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 46666653 2 56666777899999997554 899999988888875
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=22.83 E-value=3.4e+02 Score=27.15 Aligned_cols=96 Identities=16% Similarity=0.306 Sum_probs=61.4
Q ss_pred EEEecCCCeEEEEeccCcEEEEEecc---------cceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeeecc
Q 020609 208 LTYSAQDSIYKVFDLKNYTMLYSISD---------KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (323)
Q Consensus 208 lty~aq~~~YrVfdlknYs~LYsIsd---------e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L 277 (323)
.+--.||.+.|||||+--+++-.+-. .-|..+-+.| |-+|..-+...+ -+|.+|.-|..+.+|-
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss---c~lydirg~r~iq~f~--- 270 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS---CMLYDIRGGRMIQRFH--- 270 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc---eEEEEeeCCceeeeeC---
Confidence 34456899999999999998876642 2344455554 333333333333 4689999999988875
Q ss_pred ccCCcchhhh--hccceeEEEecCCceeEEeccc
Q 020609 278 HRNKKVDFIE--QFNEKLLVKQENENLQILDESN 309 (323)
Q Consensus 278 ~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~ 309 (323)
|++.+|.-.. .---|||----+..+++-||--
T Consensus 271 phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 5566665322 2234677666677777777643
No 117
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.50 E-value=3e+02 Score=30.57 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=12.9
Q ss_pred EecCCceeEEecccccee
Q 020609 296 KQENENLQILDESNSGCL 313 (323)
Q Consensus 296 KQE~~~LqI~Dl~~~~l~ 313 (323)
--|+..+.|||+.+.++.
T Consensus 595 g~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSLV 612 (707)
T ss_pred cccCCcEEEEEcCCCcch
Confidence 346778888888886543
No 118
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=22.46 E-value=58 Score=25.12 Aligned_cols=30 Identities=37% Similarity=0.759 Sum_probs=22.3
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEE
Q 020609 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 219 (323)
Q Consensus 188 e~~~L~~PgFVEFDdvN~kilty~aq~~~YrV 219 (323)
+.+..+|||--.|= -++|+.||+....|+|
T Consensus 10 e~V~~rWP~s~lYY--e~kV~~~d~~~~~y~V 39 (55)
T PF09465_consen 10 EVVMVRWPGSSLYY--EGKVLSYDSKSDRYTV 39 (55)
T ss_dssp -EEEEE-TTTS-EE--EEEEEEEETTTTEEEE
T ss_pred CEEEEECCCCCcEE--EEEEEEecccCceEEE
Confidence 45788999977763 3899999999988776
No 119
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=22.21 E-value=36 Score=34.99 Aligned_cols=21 Identities=48% Similarity=0.792 Sum_probs=18.0
Q ss_pred cccCCCCeEEecCCCceEEEEecC
Q 020609 190 ESLKWPGFVEFDDVNGKVLTYSAQ 213 (323)
Q Consensus 190 ~~L~~PgFVEFDdvN~kilty~aq 213 (323)
...+.|| ||||..| |++|++|
T Consensus 221 a~VVQPG-VEFd~~~--Vi~Y~p~ 241 (426)
T COG4573 221 AIVVQPG-VEFDHTN--VIDYQPQ 241 (426)
T ss_pred eeeecCC-cccCCCc--eeecCHH
Confidence 4567899 8999887 9999998
No 120
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=22.02 E-value=70 Score=19.23 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.9
Q ss_pred ceeEEeccccceeeeccc
Q 020609 301 NLQILDESNSGCLELSRR 318 (323)
Q Consensus 301 ~LqI~Dl~~~~l~ev~~~ 318 (323)
+|+.+|+.+-.++++|..
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 589999999999998876
No 121
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=22.01 E-value=8.1e+02 Score=27.06 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=64.9
Q ss_pred EEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCC
Q 020609 100 EIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (323)
Q Consensus 100 EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk 179 (323)
+.++-+++++.++..|..---+...-+.. .++-..++-+.+++.-..++.|+++| +.=+|..++..+|..|+
T Consensus 502 dlI~~e~~lVllTk~GyIKR~~l~~f~~~-aikLke~D~Lv~v~~~~t~d~LllfT-------~~Grv~r~~~~eIP~gr 573 (742)
T PRK05561 502 ALIPDEPVTVVLSKKGWVRRAKGHSIDAS-GLSFKEGDSLLFAFEARTTDKLLLFT-------STGRVYSLPVHELPSAR 573 (742)
T ss_pred hcccCcceEEEEecCCEEEeccchhhhhh-ccccCCCCeEEEEEEecCCCeEEEEE-------CCCcEEEeEHHhCCCcC
Confidence 45667888999999998754432211111 44443444455666666777888877 44577778888888887
Q ss_pred CCCCCcceeecccCCC-----CeEEecCCCceEEEEecCCCeEEEEeccCcE
Q 020609 180 PDAGFALFESESLKWP-----GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (323)
Q Consensus 180 ~~~g~~LFe~~~L~~P-----gFVEFDdvN~kilty~aq~~~YrVfdlknYs 226 (323)
..|.|+-.--.|. | +.+.+++ +..++.. .+.|.-|.-++.+|.
T Consensus 574 -a~Gv~i~~~i~L~-~gE~Iv~~~~~~~-~~~lllv-T~~G~~KRt~lse~~ 621 (742)
T PRK05561 574 -GDGEPLTGLVDLA-PGEEIVHVLAFDP-DQKLLLA-SSAGYGFVVTLEDLV 621 (742)
T ss_pred -CCCcChhhhcCCC-CCceEEEEEEEcC-CcEEEEE-ECCCcEEEEEhhhcc
Confidence 6676544222222 1 1333443 2233332 344555555555554
No 122
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=21.97 E-value=44 Score=32.95 Aligned_cols=12 Identities=67% Similarity=1.132 Sum_probs=9.6
Q ss_pred CCCCCCccccee
Q 020609 1 MEGGGGGGRRIS 12 (323)
Q Consensus 1 ~~~~~~~~~~~~ 12 (323)
||||||++++..
T Consensus 1 ~~~~~~~~~~~~ 12 (430)
T PLN00145 1 MEGGGGGGGGGH 12 (430)
T ss_pred CCCCCCCCCCCC
Confidence 899999987643
No 123
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=21.81 E-value=1e+03 Score=27.17 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcE-------------EEEEeccc----------ceeeEEEcCCEEE
Q 020609 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------------MLYSISDK----------NVQEIKISPGIML 247 (323)
Q Consensus 191 ~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs-------------~LYsIsde----------~VqEIkIS~Giml 247 (323)
.+.+|--+-||...+.+...+..++..++||+++-. .++..-+. +-..|-+++.=-+
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L 817 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI 817 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcE
Q ss_pred EEEecCCCeeeEEEEEeecCcee-------------eeeeeccccCCcchhhhhccceeEEEe-cCCceeEEecccccee
Q 020609 248 LIFTKASGHVPLKILSIEDGTVL-------------KSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDESNSGCL 313 (323)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l-------------~~~~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~~~l~ 313 (323)
.+....++. +.+++..+|++. ....-.+..-..|-+-+ +.+|||-- .|+.+++||+.+.++.
T Consensus 818 YVADs~N~r--IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~--dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 818 YVADSYNHK--IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE--NGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred EEEECCCCE--EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC--CCCEEEEECCCCEEEEEECCCCccc
Q ss_pred eecccceecC
Q 020609 314 ELSRRACNVV 323 (323)
Q Consensus 314 ev~~~~~~~~ 323 (323)
++...++..+
T Consensus 894 ~~~~l~~~~~ 903 (1057)
T PLN02919 894 EILTLELKGV 903 (1057)
T ss_pred eeEeeccccc
No 124
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=21.76 E-value=4.4e+02 Score=27.35 Aligned_cols=141 Identities=19% Similarity=0.198 Sum_probs=64.6
Q ss_pred ceeeeccCCCCccccccccccc---ccceeEEeeccchhh-hhhccccceeee--cccccEEEEEeCCCCceEEEEEeec
Q 020609 73 QEEYDTHDPKGHCSMVLPFLRK---RSKIIEIVAARDIVF-ALAQSGVCAAFC--RETNQRICFLNVTADEVIRSLFYNK 146 (323)
Q Consensus 73 ~~~fD~~d~k~~~~~~lpfl~k---RS~V~EIv~a~diI~-aL~~sG~c~af~--r~tn~~iC~LN~s~dEvIrSiFyNk 146 (323)
.++|||+.|--.+.+...+-.. -+.|+--++++..=. .|+..+..+.+. ++-++..|++=-+..-=|--|=|-.
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 3889999997777665544221 234444455544333 333333333322 2234555544444433333332222
Q ss_pred CCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCC--CCeEEec-CCCceEEEEecCCCeEEEEecc
Q 020609 147 NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW--PGFVEFD-DVNGKVLTYSAQDSIYKVFDLK 223 (323)
Q Consensus 147 ~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~--PgFVEFD-dvN~kilty~aq~~~YrVfdlk 223 (323)
.-+-| ++-+.++|. |=+=||| +.+.||.+=+.-+- -.=|-|| |.-|.+|+--.++|..+|||+|
T Consensus 261 dGn~l-fsGaRk~dk--------Il~WDiR----~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 261 DGNKL-FSGARKDDK--------ILCWDIR----YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred CcCee-cccccCCCe--------EEEEeeh----hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 22222 222222222 2222333 22344443222110 0012222 2345556655579999999999
Q ss_pred CcE
Q 020609 224 NYT 226 (323)
Q Consensus 224 nYs 226 (323)
+|-
T Consensus 328 ~~g 330 (406)
T KOG2919|consen 328 DLG 330 (406)
T ss_pred CCC
Confidence 986
No 125
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.54 E-value=3.1e+02 Score=31.08 Aligned_cols=49 Identities=33% Similarity=0.492 Sum_probs=37.9
Q ss_pred EecCCCeEEEEeccC---cEEEEEecccceeeEEEcC-CEEEEEEecCCCeeeE
Q 020609 210 YSAQDSIYKVFDLKN---YTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPL 259 (323)
Q Consensus 210 y~aq~~~YrVfdlkn---Ys~LYsIsde~VqEIkIS~-Gimll~~q~~~~~iPl 259 (323)
++|-++-.-||||+| |++-++-. .|+.-|-+|| |.+|+.-....-.+-+
T Consensus 30 iSPvGNrvsv~dLknN~S~Tl~~e~~-~NI~~ialSp~g~lllavdE~g~~~lv 82 (893)
T KOG0291|consen 30 ISPVGNRVSVFDLKNNKSYTLPLETR-YNITRIALSPDGTLLLAVDERGRALLV 82 (893)
T ss_pred EeccCCEEEEEEccCCcceeEEeecC-CceEEEEeCCCceEEEEEcCCCcEEEE
Confidence 468899999999999 99999987 9999999996 4555555555444433
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=21.39 E-value=1.6e+02 Score=32.60 Aligned_cols=127 Identities=23% Similarity=0.316 Sum_probs=69.1
Q ss_pred cceeEEeeccchhhhhhccccc--eeeecccccEEE-EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCcee--eeeee
Q 020609 96 SKIIEIVAARDIVFALAQSGVC--AAFCRETNQRIC-FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL--RCRST 170 (323)
Q Consensus 96 S~V~EIv~a~diI~aL~~sG~c--~af~r~tn~~iC-~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~L--kCr~~ 170 (323)
-.|.++.-|.-=-..+..||=. ..||..+++.+- -+|.++.-=++|+=+-+-|-.+.. ...-|+..| -||..
T Consensus 101 nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~---tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFC---TGGRDGEILLWDCRCN 177 (720)
T ss_pred ceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCccee---eccCCCcEEEEEEecc
Confidence 3455555553333445566644 457777777554 378888888899888776655443 223332322 23333
Q ss_pred ehh---------hhh----------------hCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCc
Q 020609 171 RIE---------YIR----------------RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY 225 (323)
Q Consensus 171 ~i~---------~i~----------------~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknY 225 (323)
... |+. .+|. ++-..|.++- -|-|-| +.-+.++.+.|++.|||||+.=
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvT-----vv~fkD-e~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVT-----VVLFKD-ESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhcccccccc-ccCceeeeeE-----EEEEec-cceeeeccCCCcceEEEeeccc
Confidence 311 221 1111 1111222110 122333 4567888899999999999877
Q ss_pred EEEEEec
Q 020609 226 TMLYSIS 232 (323)
Q Consensus 226 s~LYsIs 232 (323)
...|.-.
T Consensus 251 ~~~~r~e 257 (720)
T KOG0321|consen 251 YTAYRQE 257 (720)
T ss_pred ccccccC
Confidence 6666543
No 127
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=21.06 E-value=1.7e+02 Score=27.29 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=31.3
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEE--------EEEecccceeeEEEcCCEEE
Q 020609 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--------LYSISDKNVQEIKISPGIML 247 (323)
Q Consensus 191 ~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~--------LYsIsde~VqEIkIS~Giml 247 (323)
.-.||+||+++| ...+.|+.+.. .++.. -+..+.-.|.|.+..||.++
T Consensus 236 ~~~H~~i~~~~~--~~y~~Yh~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~~ 291 (294)
T cd08984 236 KGRHADVVVTGD--RAYIFYFTHPG-------REYEAEDDAADPYRYRRSSIQVAELEVVDGKLV 291 (294)
T ss_pred cccCCcEEEeCC--EEEEEEEecCC-------CcccccccccCchhheeeeEEEEEEEEeCCEEE
Confidence 347899999985 67788887753 22222 13444455777777888774
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.71 E-value=2.4e+02 Score=29.31 Aligned_cols=20 Identities=15% Similarity=0.615 Sum_probs=17.3
Q ss_pred CceEEEEecCCCeEEEEecc
Q 020609 204 NGKVLTYSAQDSIYKVFDLK 223 (323)
Q Consensus 204 N~kilty~aq~~~YrVfdlk 223 (323)
|.|.+.-+.-|.+||.||.+
T Consensus 325 tQrLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred cceEEEEeccCceeEeccch
Confidence 67777778889999999987
No 129
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=20.36 E-value=1.6e+02 Score=24.97 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCEEEEEEecCCCeeeEEEEEeecCceeeeee
Q 020609 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 243 ~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
-|++.++...+...+.|+|+||.++..+-+..
T Consensus 29 ~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqE 60 (105)
T cd01205 29 TGAVCLVKDNVQKSYFIRLFDIKANRIIWEQE 60 (105)
T ss_pred EEEEEEEEECCCCEEEEEEEEccCCcEEEEEE
Confidence 58999999999999999999999998887655
Done!