Query 020609
Match_columns 323
No_of_seqs 40 out of 42
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3odt_A Protein DOA1; ubiquitin 98.1 0.00061 2.1E-08 56.0 19.7 218 74-316 84-303 (313)
2 1sq9_A Antiviral protein SKI8; 98.0 0.0034 1.2E-07 53.9 22.4 213 94-315 61-328 (397)
3 3v7d_B Cell division control p 97.9 0.0009 3.1E-08 59.6 18.6 203 94-312 161-384 (464)
4 3gre_A Serine/threonine-protei 97.9 0.0032 1.1E-07 55.6 21.4 180 120-314 48-250 (437)
5 2ovr_B FBW7, F-BOX/WD repeat p 97.9 0.0016 5.3E-08 58.3 18.9 191 94-314 158-353 (445)
6 2ynn_A Coatomer subunit beta'; 97.9 0.0056 1.9E-07 52.5 21.5 188 105-315 67-265 (304)
7 4g56_B MGC81050 protein; prote 97.9 0.0011 3.9E-08 58.7 17.7 219 73-310 117-344 (357)
8 1p22_A F-BOX/WD-repeat protein 97.8 0.0015 5.2E-08 58.5 18.1 191 94-311 172-367 (435)
9 2ovr_B FBW7, F-BOX/WD repeat p 97.8 0.003 1E-07 56.4 19.7 193 95-314 199-396 (445)
10 3odt_A Protein DOA1; ubiquitin 97.8 0.0052 1.8E-07 50.5 18.9 213 96-315 19-261 (313)
11 3gre_A Serine/threonine-protei 97.7 0.00058 2E-08 60.3 13.8 206 95-315 63-298 (437)
12 3zwl_B Eukaryotic translation 97.7 0.0087 3E-07 50.0 19.6 209 94-315 73-310 (369)
13 4gqb_B Methylosome protein 50; 97.7 0.003 1E-07 56.5 17.9 221 73-312 105-334 (344)
14 4ery_A WD repeat-containing pr 97.7 0.014 4.8E-07 49.2 20.5 194 97-314 25-228 (312)
15 4ery_A WD repeat-containing pr 97.7 0.019 6.4E-07 48.4 21.2 197 95-315 65-274 (312)
16 1sq9_A Antiviral protein SKI8; 97.6 0.0022 7.4E-08 55.2 15.2 206 96-315 17-273 (397)
17 3k26_A Polycomb protein EED; W 97.6 0.0011 3.9E-08 55.5 12.6 193 96-312 70-321 (366)
18 1l0q_A Surface layer protein; 97.6 0.0088 3E-07 51.6 18.4 183 112-314 51-238 (391)
19 3k26_A Polycomb protein EED; W 97.6 0.0021 7.2E-08 53.8 14.0 199 95-312 18-263 (366)
20 4aez_A CDC20, WD repeat-contai 97.6 0.031 1.1E-06 49.4 22.1 202 94-314 175-385 (401)
21 1l0q_A Surface layer protein; 97.5 0.01 3.5E-07 51.2 18.3 188 108-315 5-195 (391)
22 1gxr_A ESG1, transducin-like e 97.5 0.01 3.4E-07 49.1 17.5 188 107-316 65-262 (337)
23 4gqb_B Methylosome protein 50; 97.5 0.0053 1.8E-07 54.9 17.0 199 94-315 81-295 (344)
24 4g56_B MGC81050 protein; prote 97.5 0.0025 8.7E-08 56.5 14.3 203 90-315 89-307 (357)
25 2pm9_A Protein WEB1, protein t 97.5 0.0013 4.5E-08 56.7 11.8 202 94-312 112-340 (416)
26 1gxr_A ESG1, transducin-like e 97.4 0.016 5.4E-07 47.9 17.6 191 95-308 141-336 (337)
27 2pm9_A Protein WEB1, protein t 97.4 0.0075 2.6E-07 52.0 15.7 208 94-314 66-299 (416)
28 1pgu_A Actin interacting prote 97.4 0.038 1.3E-06 50.1 21.0 200 95-315 63-289 (615)
29 3vl1_A 26S proteasome regulato 97.4 0.007 2.4E-07 52.6 15.5 183 105-311 109-324 (420)
30 3i2n_A WD repeat-containing pr 97.4 0.0089 3E-07 50.0 15.4 202 94-311 64-293 (357)
31 2aq5_A Coronin-1A; WD40 repeat 97.4 0.0095 3.2E-07 52.4 16.3 185 112-311 54-256 (402)
32 3bws_A Protein LP49; two-domai 97.4 0.017 5.6E-07 50.6 17.7 200 97-309 213-432 (433)
33 2aq5_A Coronin-1A; WD40 repeat 97.4 0.0084 2.9E-07 52.8 15.9 201 94-315 130-348 (402)
34 1p22_A F-BOX/WD-repeat protein 97.3 0.019 6.5E-07 51.4 18.3 190 98-314 136-330 (435)
35 4aez_A CDC20, WD repeat-contai 97.3 0.041 1.4E-06 48.7 20.2 186 106-315 104-299 (401)
36 3mkq_A Coatomer beta'-subunit; 97.3 0.023 8E-07 54.1 19.8 196 96-314 56-264 (814)
37 1vyh_C Platelet-activating fac 97.3 0.013 4.4E-07 52.8 17.2 199 94-314 107-332 (410)
38 1got_B GT-beta; complex (GTP-b 97.3 0.057 1.9E-06 46.9 20.8 197 96-313 56-261 (340)
39 1k8k_C P40, ARP2/3 complex 41 97.3 0.016 5.6E-07 48.9 16.7 196 95-309 52-274 (372)
40 2ynn_A Coatomer subunit beta'; 97.3 0.03 1E-06 47.9 18.7 200 95-310 97-303 (304)
41 1got_B GT-beta; complex (GTP-b 97.3 0.034 1.2E-06 48.3 19.0 175 107-306 156-340 (340)
42 1vyh_C Platelet-activating fac 97.3 0.024 8.3E-07 51.0 18.6 193 96-314 151-374 (410)
43 1pgu_A Actin interacting prote 97.3 0.012 3.9E-07 53.5 16.3 160 95-274 160-336 (615)
44 3ow8_A WD repeat-containing pr 97.3 0.018 6.2E-07 50.2 17.0 184 107-314 94-284 (321)
45 3lrv_A PRE-mRNA-splicing facto 97.3 0.013 4.5E-07 50.7 15.9 182 109-309 98-292 (343)
46 3ei3_B DNA damage-binding prot 97.2 0.083 2.8E-06 45.7 20.5 188 106-312 87-285 (383)
47 4a11_B DNA excision repair pro 97.2 0.01 3.5E-07 50.5 14.5 202 95-313 43-280 (408)
48 1r5m_A SIR4-interacting protei 97.2 0.026 8.7E-07 48.1 16.7 195 96-315 46-284 (425)
49 3jrp_A Fusion protein of prote 97.2 0.086 2.9E-06 44.3 20.7 201 94-310 54-288 (379)
50 1r5m_A SIR4-interacting protei 97.1 0.028 9.6E-07 47.9 16.3 181 105-308 217-424 (425)
51 3v7d_B Cell division control p 97.1 0.028 9.7E-07 49.9 16.6 187 95-308 270-461 (464)
52 3vl1_A 26S proteasome regulato 97.1 0.036 1.2E-06 48.1 16.9 199 94-309 138-365 (420)
53 3bws_A Protein LP49; two-domai 97.1 0.048 1.7E-06 47.7 17.7 192 106-314 135-339 (433)
54 2vdu_B TRNA (guanine-N(7)-)-me 97.1 0.12 4.3E-06 46.4 20.8 197 96-307 103-337 (450)
55 3ow8_A WD repeat-containing pr 97.1 0.073 2.5E-06 46.4 18.5 178 106-307 135-319 (321)
56 2pbi_B Guanine nucleotide-bind 97.0 0.12 4E-06 45.6 19.9 188 107-313 78-275 (354)
57 3vgz_A Uncharacterized protein 97.0 0.12 4.1E-06 43.4 21.0 188 108-314 104-308 (353)
58 1erj_A Transcriptional repress 97.0 0.13 4.3E-06 45.8 19.9 197 98-314 126-346 (393)
59 3i2n_A WD repeat-containing pr 97.0 0.04 1.4E-06 46.0 15.5 180 114-313 43-247 (357)
60 3ei3_B DNA damage-binding prot 97.0 0.15 5.2E-06 44.0 23.3 202 94-315 117-345 (383)
61 3mkq_A Coatomer beta'-subunit; 97.0 0.042 1.4E-06 52.3 17.5 186 105-314 25-222 (814)
62 3zwl_B Eukaryotic translation 97.0 0.13 4.4E-06 42.9 21.5 201 94-315 31-255 (369)
63 4aow_A Guanine nucleotide-bind 96.9 0.06 2E-06 44.8 16.2 187 105-310 140-338 (340)
64 3f3f_A Nucleoporin SEH1; struc 96.9 0.015 5.2E-07 47.4 12.1 109 198-313 17-147 (351)
65 1k8k_C P40, ARP2/3 complex 41 96.9 0.12 4E-06 43.6 17.7 186 107-315 22-239 (372)
66 4ggc_A P55CDC, cell division c 96.9 0.1 3.6E-06 42.9 17.1 188 105-310 119-316 (318)
67 3iz6_a 40S ribosomal protein R 96.8 0.15 5E-06 45.2 18.8 188 107-310 172-376 (380)
68 1nir_A Nitrite reductase; hemo 96.7 0.093 3.2E-06 50.5 18.1 190 106-315 150-361 (543)
69 3jrp_A Fusion protein of prote 96.7 0.19 6.4E-06 42.2 17.3 189 106-311 24-242 (379)
70 4a11_B DNA excision repair pro 96.6 0.26 8.9E-06 41.8 18.1 201 94-315 98-329 (408)
71 1pby_B Quinohemoprotein amine 96.6 0.082 2.8E-06 43.8 14.6 189 106-313 2-232 (337)
72 1yfq_A Cell cycle arrest prote 96.6 0.25 8.5E-06 41.3 17.6 197 94-314 55-287 (342)
73 4e54_B DNA damage-binding prot 96.6 0.015 5.1E-07 52.4 10.7 200 97-313 121-331 (435)
74 2vdu_B TRNA (guanine-N(7)-)-me 96.5 0.16 5.5E-06 45.7 16.8 157 138-314 104-276 (450)
75 2hes_X YDR267CP; beta-propelle 96.4 0.42 1.4E-05 41.4 19.1 195 97-310 16-231 (330)
76 3dm0_A Maltose-binding peripla 96.4 0.14 4.8E-06 49.2 16.6 198 96-315 431-638 (694)
77 4ggc_A P55CDC, cell division c 96.4 0.34 1.1E-05 39.9 16.9 191 112-315 42-279 (318)
78 3sfz_A APAF-1, apoptotic pepti 96.3 0.38 1.3E-05 48.8 20.1 197 95-314 657-876 (1249)
79 1yfq_A Cell cycle arrest prote 96.3 0.14 4.8E-06 42.8 14.4 178 106-310 24-226 (342)
80 1nir_A Nitrite reductase; hemo 96.3 0.065 2.2E-06 51.6 13.9 206 97-317 281-522 (543)
81 3u4y_A Uncharacterized protein 96.3 0.41 1.4E-05 40.2 19.3 190 116-318 109-313 (331)
82 3mmy_A MRNA export factor; mRN 96.3 0.095 3.3E-06 43.6 13.1 111 197-314 44-165 (368)
83 3mmy_A MRNA export factor; mRN 96.3 0.41 1.4E-05 39.8 19.9 193 95-310 39-248 (368)
84 3iz6_a 40S ribosomal protein R 96.3 0.29 1E-05 43.2 16.8 203 95-315 66-286 (380)
85 1erj_A Transcriptional repress 96.1 0.09 3.1E-06 46.8 12.6 112 198-314 129-243 (393)
86 4e54_B DNA damage-binding prot 96.0 0.057 2E-06 48.6 11.4 186 110-313 226-434 (435)
87 4gga_A P55CDC, cell division c 96.0 0.6 2.1E-05 41.6 17.8 108 198-310 282-396 (420)
88 3dm0_A Maltose-binding peripla 96.0 0.33 1.1E-05 46.6 17.1 195 95-309 472-693 (694)
89 2oaj_A Protein SNI1; WD40 repe 96.0 0.32 1.1E-05 49.8 17.9 191 97-314 19-247 (902)
90 2pbi_B Guanine nucleotide-bind 95.8 0.8 2.7E-05 40.3 17.5 175 107-306 168-354 (354)
91 1ri6_A Putative isomerase YBHE 95.8 0.52 1.8E-05 39.0 15.3 185 112-309 12-209 (343)
92 3dwl_C Actin-related protein 2 95.8 0.1 3.5E-06 44.7 11.2 183 107-312 25-239 (377)
93 2xyi_A Probable histone-bindin 95.7 0.1 3.5E-06 47.0 11.7 200 94-309 127-353 (430)
94 1nr0_A Actin interacting prote 95.7 1.1 3.8E-05 42.5 19.3 186 108-315 163-361 (611)
95 1jmx_B Amine dehydrogenase; ox 95.6 0.85 2.9E-05 38.0 16.4 187 112-314 62-330 (349)
96 3jro_A Fusion protein of prote 95.5 0.81 2.8E-05 45.2 18.1 201 94-310 52-286 (753)
97 3vu4_A KMHSV2; beta-propeller 95.5 0.86 2.9E-05 40.1 16.4 185 99-311 64-273 (355)
98 3vgz_A Uncharacterized protein 95.5 0.95 3.2E-05 37.9 20.5 120 193-315 89-221 (353)
99 3frx_A Guanine nucleotide-bind 95.5 1.1 3.8E-05 38.5 20.0 194 97-315 67-273 (319)
100 3hfq_A Uncharacterized protein 95.3 1.1 3.9E-05 38.1 16.0 115 191-309 84-218 (347)
101 3jro_A Fusion protein of prote 95.3 0.7 2.4E-05 45.6 16.8 187 106-311 22-240 (753)
102 3frx_A Guanine nucleotide-bind 95.3 0.2 7E-06 43.1 11.5 193 95-310 107-318 (319)
103 1nr0_A Actin interacting prote 95.2 1.6 5.4E-05 41.5 18.3 193 106-314 72-275 (611)
104 3dwl_C Actin-related protein 2 95.1 0.039 1.3E-06 47.3 6.3 110 198-311 17-133 (377)
105 4h5i_A Guanine nucleotide-exch 95.0 1.5 5.1E-05 38.9 16.6 172 114-309 156-343 (365)
106 1jmx_B Amine dehydrogenase; ox 94.9 0.46 1.6E-05 39.6 12.3 104 204-312 10-137 (349)
107 3u4y_A Uncharacterized protein 94.9 1.5 5.1E-05 36.7 19.4 188 108-312 13-210 (331)
108 3dw8_B Serine/threonine-protei 94.8 1.8 6.2E-05 37.6 16.3 206 95-312 28-319 (447)
109 2xyi_A Probable histone-bindin 94.8 0.74 2.5E-05 41.4 14.2 189 107-313 196-414 (430)
110 3sfz_A APAF-1, apoptotic pepti 94.7 2.5 8.5E-05 42.9 19.2 198 95-315 615-834 (1249)
111 3lrv_A PRE-mRNA-splicing facto 94.7 0.67 2.3E-05 40.0 13.1 123 97-230 172-298 (343)
112 1pby_B Quinohemoprotein amine 94.6 1.6 5.4E-05 36.0 16.5 55 258-314 261-315 (337)
113 3vu4_A KMHSV2; beta-propeller 94.6 0.52 1.8E-05 41.5 12.4 104 197-310 24-129 (355)
114 2oaj_A Protein SNI1; WD40 repe 94.6 0.33 1.1E-05 49.7 12.7 110 198-313 23-133 (902)
115 3dw8_B Serine/threonine-protei 94.5 0.32 1.1E-05 42.4 10.7 199 96-315 94-379 (447)
116 3f3f_A Nucleoporin SEH1; struc 94.4 1.7 5.8E-05 35.3 21.9 180 74-267 36-250 (351)
117 2oit_A Nucleoporin 214KDA; NH2 94.3 2.2 7.5E-05 39.5 16.4 131 137-274 93-230 (434)
118 4aow_A Guanine nucleotide-bind 93.9 2.3 8E-05 35.2 21.8 196 95-314 86-291 (340)
119 3fvz_A Peptidyl-glycine alpha- 93.8 0.84 2.9E-05 39.7 12.0 85 190-274 193-285 (329)
120 2w18_A PALB2, fancn, partner a 93.3 0.82 2.8E-05 43.9 12.0 112 204-315 192-320 (356)
121 2xzm_R RACK1; ribosome, transl 93.1 1.3 4.4E-05 38.3 11.9 103 203-311 37-151 (343)
122 4gga_A P55CDC, cell division c 93.1 4.5 0.00015 35.9 16.9 187 109-316 119-317 (420)
123 3fm0_A Protein CIAO1; WDR39,SG 93.0 4.1 0.00014 35.3 19.1 182 106-308 29-224 (345)
124 3bg1_A Protein SEC13 homolog; 92.9 1.9 6.4E-05 37.1 12.6 109 198-311 19-138 (316)
125 2pm7_B Protein transport prote 92.8 1.5 5E-05 37.2 11.7 107 198-311 15-134 (297)
126 2xzm_R RACK1; ribosome, transl 92.2 5.1 0.00018 34.5 16.8 204 96-310 77-341 (343)
127 1ri6_A Putative isomerase YBHE 92.1 4.4 0.00015 33.4 15.5 120 192-315 37-167 (343)
128 4gq1_A NUP37; propeller, trans 91.8 1.8 6.3E-05 38.5 11.5 109 198-312 94-221 (393)
129 4gq1_A NUP37; propeller, trans 91.5 1.8 6E-05 38.6 11.1 107 203-312 154-289 (393)
130 3bg1_A Protein SEC13 homolog; 90.6 7.3 0.00025 33.3 13.7 162 131-310 8-199 (316)
131 2kr7_A FKBP-type peptidyl-prol 90.4 0.32 1.1E-05 40.7 4.8 61 224-285 77-137 (151)
132 2oit_A Nucleoporin 214KDA; NH2 90.1 1.8 6E-05 40.2 10.1 107 198-312 98-226 (434)
133 3dsm_A Uncharacterized protein 90.1 9 0.00031 33.4 18.2 192 100-313 48-257 (328)
134 2ymu_A WD-40 repeat protein; u 89.5 12 0.00041 33.9 18.5 186 95-309 344-539 (577)
135 2w18_A PALB2, fancn, partner a 88.8 2.6 8.7E-05 40.5 10.4 125 106-243 194-336 (356)
136 4h5i_A Guanine nucleotide-exch 88.5 13 0.00043 32.9 16.2 157 96-266 177-343 (365)
137 1xfd_A DIP, dipeptidyl aminope 88.4 2.3 7.9E-05 40.2 9.6 135 167-316 2-150 (723)
138 3fm0_A Protein CIAO1; WDR39,SG 88.2 8.2 0.00028 33.5 12.3 108 197-311 21-138 (345)
139 4dt4_A FKBP-type 16 kDa peptid 87.8 0.48 1.6E-05 41.0 4.2 61 224-285 95-156 (169)
140 2j04_A TAU60, YPL007P, hypothe 86.1 12 0.0004 38.3 13.8 188 97-308 87-296 (588)
141 3cgm_A SLYD, peptidyl-prolyl C 85.3 0.8 2.7E-05 38.9 4.2 61 224-285 67-128 (158)
142 2j04_B YDR362CP, TAU91; beta p 84.8 0.99 3.4E-05 43.6 5.1 182 107-310 227-429 (524)
143 3fvz_A Peptidyl-glycine alpha- 84.4 19 0.00066 31.1 18.5 184 114-315 68-283 (329)
144 2ojh_A Uncharacterized protein 82.0 17 0.00059 28.7 14.4 190 113-316 60-265 (297)
145 2j04_A TAU60, YPL007P, hypothe 80.9 8.4 0.00029 39.3 10.3 109 199-313 92-215 (588)
146 3dsm_A Uncharacterized protein 80.7 16 0.00054 31.9 10.8 118 115-253 203-324 (328)
147 2hqs_A Protein TOLB; TOLB, PAL 80.1 23 0.00078 32.0 12.0 117 197-316 183-307 (415)
148 2ecf_A Dipeptidyl peptidase IV 78.2 18 0.00063 34.3 11.1 184 116-316 65-328 (741)
149 2kfw_A FKBP-type peptidyl-prol 78.1 0.84 2.9E-05 40.3 1.8 60 224-285 72-132 (196)
150 3hrp_A Uncharacterized protein 77.7 43 0.0015 30.7 13.4 126 187-315 125-255 (409)
151 2pm7_B Protein transport prote 77.3 31 0.0011 29.0 18.0 183 106-310 22-239 (297)
152 2k8i_A SLYD, peptidyl-prolyl C 77.2 1.4 4.8E-05 37.9 2.9 60 224-285 72-132 (171)
153 1q7f_A NHL, brain tumor CG1071 76.6 30 0.001 28.4 19.8 176 114-309 99-280 (286)
154 2j04_B YDR362CP, TAU91; beta p 76.6 15 0.0005 35.4 10.2 136 96-244 267-408 (524)
155 3scy_A Hypothetical bacterial 76.0 36 0.0012 29.0 13.9 121 193-316 211-346 (361)
156 3q7m_A Lipoprotein YFGL, BAMB; 75.7 39 0.0013 29.3 16.0 95 214-314 248-342 (376)
157 3hfq_A Uncharacterized protein 74.3 39 0.0013 28.5 16.7 175 107-289 154-343 (347)
158 1qks_A Cytochrome CD1 nitrite 72.2 78 0.0027 31.1 18.3 183 106-314 168-378 (567)
159 3no2_A Uncharacterized protein 70.3 42 0.0014 29.0 10.6 151 106-274 89-260 (276)
160 1kb0_A Quinohemoprotein alcoho 69.7 37 0.0013 33.7 11.4 135 106-274 328-515 (677)
161 1jof_A Carboxy-CIS,CIS-muconat 69.1 57 0.002 28.3 13.3 123 192-314 144-297 (365)
162 1suu_A DNA gyrase subunit A; t 68.7 33 0.0011 31.2 10.0 117 100-226 3-135 (312)
163 2oiz_A Aromatic amine dehydrog 66.9 42 0.0014 29.8 10.2 75 195-273 256-343 (361)
164 2z3z_A Dipeptidyl aminopeptida 65.7 29 0.00099 32.8 9.2 120 178-315 11-161 (706)
165 2ymu_A WD-40 repeat protein; u 64.7 81 0.0028 28.5 20.3 192 95-314 57-257 (577)
166 2hz6_A Endoplasmic reticulum t 64.5 4.6 0.00016 36.4 3.5 183 104-313 8-196 (369)
167 2ojh_A Uncharacterized protein 62.6 55 0.0019 25.8 15.4 182 115-316 22-213 (297)
168 1ix5_A FKBP; ppiase, isomerase 60.1 1.5 5.2E-05 36.6 -0.5 56 224-285 85-142 (151)
169 2hes_X YDR267CP; beta-propelle 60.0 82 0.0028 26.9 20.7 195 96-309 108-328 (330)
170 3no2_A Uncharacterized protein 56.5 97 0.0033 26.7 12.6 147 112-274 53-203 (276)
171 3mbr_X Glutamine cyclotransfer 56.0 1.1E+02 0.0039 27.4 11.1 108 203-315 73-185 (243)
172 1qks_A Cytochrome CD1 nitrite 55.9 1.2E+02 0.0042 29.7 12.1 108 200-315 163-281 (567)
173 3pr9_A FKBP-type peptidyl-prol 55.6 4 0.00014 34.6 1.4 57 223-285 83-141 (157)
174 1k32_A Tricorn protease; prote 54.9 1.1E+02 0.0039 31.1 12.0 114 197-317 342-469 (1045)
175 2gop_A Trilobed protease; beta 54.5 68 0.0023 26.8 8.8 66 204-272 23-100 (347)
176 3o4h_A Acylamino-acid-releasin 52.7 88 0.003 29.0 10.0 108 203-316 31-148 (582)
177 3q7m_A Lipoprotein YFGL, BAMB; 52.2 1.2E+02 0.0039 26.3 16.1 177 103-306 186-375 (376)
178 2ecf_A Dipeptidyl peptidase IV 51.7 1.2E+02 0.0041 28.7 10.8 113 194-316 38-188 (741)
179 2lcj_A PAB POLC intein; hydrol 50.4 43 0.0015 28.2 7.0 95 169-272 18-119 (185)
180 4a5s_A Dipeptidyl peptidase 4 46.9 64 0.0022 31.4 8.4 133 168-318 3-150 (740)
181 1npe_A Nidogen, entactin; glyc 46.4 1.2E+02 0.0042 24.9 10.2 83 189-274 163-246 (267)
182 1k32_A Tricorn protease; prote 45.6 2.6E+02 0.0089 28.5 18.4 199 97-311 380-639 (1045)
183 1q7f_A NHL, brain tumor CG1071 45.4 1.2E+02 0.0042 24.7 11.6 119 190-315 27-157 (286)
184 3scy_A Hypothetical bacterial 45.3 1.4E+02 0.0048 25.3 13.9 78 194-271 260-344 (361)
185 3pe7_A Oligogalacturonate lyas 44.8 78 0.0027 26.9 7.7 66 203-272 45-117 (388)
186 2hqs_A Protein TOLB; TOLB, PAL 43.8 1.8E+02 0.0062 26.1 18.4 184 116-318 204-396 (415)
187 1z68_A Fibroblast activation p 43.6 1.1E+02 0.0036 29.1 9.1 131 170-316 4-146 (719)
188 1xfd_A DIP, dipeptidyl aminope 43.1 2.2E+02 0.0074 26.8 12.0 58 216-273 229-296 (723)
189 1jof_A Carboxy-CIS,CIS-muconat 41.7 1.7E+02 0.0059 25.3 16.9 190 113-316 117-348 (365)
190 3o4h_A Acylamino-acid-releasin 41.0 2.2E+02 0.0075 26.3 12.2 60 200-265 253-312 (582)
191 3prb_A FKBP-type peptidyl-prol 40.2 11 0.00037 34.1 1.7 76 223-304 83-181 (231)
192 2iwa_A Glutamine cyclotransfer 37.7 2.3E+02 0.0077 25.5 13.2 109 198-313 26-139 (266)
193 1at0_A 17-hedgehog; developmen 34.2 1.2E+02 0.0041 24.7 7.0 50 205-254 25-81 (145)
194 1yiq_A Quinohemoprotein alcoho 32.2 2.5E+02 0.0086 27.8 10.2 129 105-274 319-513 (689)
195 2z3z_A Dipeptidyl aminopeptida 31.6 3.3E+02 0.011 25.6 18.9 187 115-311 235-437 (706)
196 3c5m_A Oligogalacturonate lyas 30.5 2.4E+02 0.0082 23.6 9.0 97 216-316 10-118 (396)
197 1kb0_A Quinohemoprotein alcoho 30.3 4.1E+02 0.014 26.2 18.9 54 258-313 458-511 (677)
198 1xip_A Nucleoporin NUP159; bet 28.4 2.3E+02 0.0079 26.7 8.8 105 198-314 43-160 (388)
199 1dq3_A Endonuclease; PI-PFUI, 27.8 1E+02 0.0035 29.4 6.3 70 202-271 48-125 (454)
200 3pe7_A Oligogalacturonate lyas 27.4 2.8E+02 0.0096 23.4 12.2 113 203-316 90-232 (388)
201 2hz6_A Endoplasmic reticulum t 26.6 38 0.0013 30.4 2.9 95 213-313 17-115 (369)
202 4e2u_A PHO RADA intein; HINT-f 26.3 1.6E+02 0.0053 24.5 6.5 46 205-251 52-103 (168)
203 3nok_A Glutaminyl cyclase; bet 26.2 3.8E+02 0.013 24.5 12.9 111 200-315 101-216 (268)
204 2iwa_A Glutamine cyclotransfer 25.2 3.7E+02 0.013 24.0 11.0 109 200-314 71-186 (266)
205 1oh1_A Staphostatin A; cystein 24.2 72 0.0025 26.2 3.8 27 124-153 50-77 (109)
206 3c5m_A Oligogalacturonate lyas 24.0 3.2E+02 0.011 22.9 11.8 126 136-274 237-392 (396)
207 2z14_A EF-hand domain-containi 23.2 44 0.0015 27.9 2.4 41 194-237 5-51 (133)
208 2jmz_A Hypothetical protein MJ 23.0 1.1E+02 0.0038 25.7 5.0 69 198-271 60-128 (186)
209 2qe8_A Uncharacterized protein 23.0 3.7E+02 0.013 23.2 8.8 59 192-251 247-309 (343)
210 3nok_A Glutaminyl cyclase; bet 21.8 4.7E+02 0.016 24.0 11.0 107 198-313 60-168 (268)
211 1mi8_A DNAB intein; all beta-s 21.0 2E+02 0.0067 23.1 6.0 34 217-251 48-81 (158)
212 1zvu_A Topoisomerase IV subuni 20.6 90 0.0031 32.9 4.7 77 100-185 467-543 (716)
213 1y55_X Avidin-related protein 20.2 56 0.0019 27.3 2.5 24 123-148 77-100 (126)
214 2c1s_A Biotin binding protein 20.0 67 0.0023 26.9 2.9 24 122-147 80-103 (126)
No 1
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00061 Score=56.00 Aligned_cols=218 Identities=13% Similarity=0.168 Sum_probs=132.4
Q ss_pred eeeeccCCCCcccccccccccccceeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEE
Q 020609 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT 153 (323)
Q Consensus 74 ~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlIt 153 (323)
..+|..+......+ ..+-.....|..+-...+.+++-...|....|| +++.+..+......+....|.....+.+++
T Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 84 NGVPLFATSGEDPL-YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EEEETTCCTTSCC--CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEEEeeecCCCCcc-cchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 45666665433222 122234567777777788888888999999999 788888887766665555555545565555
Q ss_pred EEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-
Q 020609 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 232 (323)
Q Consensus 154 vSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs- 232 (323)
.| .|. .++... .. .....|....-...--+.|.+. ++ ++....++..++||+++-+.+.++.
T Consensus 161 ~~---~d~--~i~i~d--~~--------~~~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~ 223 (313)
T 3odt_A 161 AS---ADK--TIKLWQ--ND--------KVIKTFSGIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEG 223 (313)
T ss_dssp EE---TTS--CEEEEE--TT--------EEEEEECSSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EE---CCC--CEEEEe--cC--------ceEEEEeccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhc
Confidence 33 222 232221 00 0011111111122233455544 44 5556789999999999999888775
Q ss_pred -ccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccc
Q 020609 233 -DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 233 -de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
...+..+.++|.-.++ .-...+. ++|+++.+|+.+..+...-..-..+.|.. +.+++.=-.+..+++||+.+.+
T Consensus 224 ~~~~i~~~~~~~~~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 224 HESFVYCIKLLPNGDIV-SCGEDRT--VRIWSKENGSLKQVITLPAISIWSVDCMS--NGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CSSCEEEEEECTTSCEE-EEETTSE--EEEECTTTCCEEEEEECSSSCEEEEEECT--TSCEEEEETTSCEEEEESCGGG
T ss_pred CCceEEEEEEecCCCEE-EEecCCE--EEEEECCCCceeEEEeccCceEEEEEEcc--CCCEEEEeCCCcEEEEeCCCCc
Confidence 5668889998553322 3333443 68999999999988763211122334433 2347787889999999999987
Q ss_pred eeeec
Q 020609 312 CLELS 316 (323)
Q Consensus 312 l~ev~ 316 (323)
+....
T Consensus 299 ~~~~~ 303 (313)
T 3odt_A 299 WASED 303 (313)
T ss_dssp CCC--
T ss_pred eeehh
Confidence 76543
No 2
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.99 E-value=0.0034 Score=53.93 Aligned_cols=213 Identities=12% Similarity=0.130 Sum_probs=132.0
Q ss_pred cccceeEEeecc---------chhhhhhccccceeeecccccE-----EEEEeCCC----CceEEEEEee----cCCCe-
Q 020609 94 KRSKIIEIVAAR---------DIVFALAQSGVCAAFCRETNQR-----ICFLNVTA----DEVIRSLFYN----KNNDS- 150 (323)
Q Consensus 94 kRS~V~EIv~a~---------diI~aL~~sG~c~af~r~tn~~-----iC~LN~s~----dEvIrSiFyN----k~NdS- 150 (323)
...+|..+-... .+++.-...|....||..+++. +..+...+ +.-|.++-++ ...+.
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence 456677776653 4677777889999999999987 77776654 5788899888 76666
Q ss_pred EEEEEeEecCCCceeeeeeeehhhhh---hCCCCCCCc--cee------ecccCCCCeEEecCCCceEEEEecCCCeEEE
Q 020609 151 LITVSVYASDNFSSLRCRSTRIEYIR---RGKPDAGFA--LFE------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 219 (323)
Q Consensus 151 lItvSvy~sd~fS~LkCr~~~i~~i~---~Gk~~~g~~--LFe------~~~L~~PgFVEFDdvN~kilty~aq~~~YrV 219 (323)
|++.| .|. .++...+. ... .++.-.-.| -+. ...-...--+.|+..+ .++....++..++
T Consensus 141 l~~~~---~dg--~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i 211 (397)
T 1sq9_A 141 LVATD---VKG--TTYIWKFH--PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQI 211 (397)
T ss_dssp EEEEE---TTS--CEEEEEEE--SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEE
T ss_pred EEEEe---CCC--cEEEEeCC--ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEE
Confidence 55533 222 23332222 100 011111000 111 1112234456777654 6777778999999
Q ss_pred EeccCcEEEEEec--------ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccc----------cC
Q 020609 220 FDLKNYTMLYSIS--------DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH----------RN 280 (323)
Q Consensus 220 fdlknYs~LYsIs--------de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~----------~s 280 (323)
||+++.+.+..+. ...+..+.++| |-+|+.-......=-++|+++.+++.+..+....+ +.
T Consensus 212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence 9999999888886 45688899884 45544443332224588999999999887763110 23
Q ss_pred Ccchhhhh--ccceeEEEecCCceeEEeccccceeee
Q 020609 281 KKVDFIEQ--FNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 281 k~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
..+.-+.- -+.+|+.=-++..++|||+.+.++...
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 328 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEE
Confidence 33333332 256788888999999999998876543
No 3
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.94 E-value=0.0009 Score=59.56 Aligned_cols=203 Identities=11% Similarity=0.133 Sum_probs=128.7
Q ss_pred cccceeEEeecc-chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCC-eEEEEEeEecCCCceeeeeeee
Q 020609 94 KRSKIIEIVAAR-DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 94 kRS~V~EIv~a~-diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~Nd-SlItvSvy~sd~fS~LkCr~~~ 171 (323)
....|..+.... ..++.-...|....||..+++.+..+.. +..-|.++=++...+ .++. +. ..|. .++.-.+
T Consensus 161 h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~-s~-s~d~--~i~vwd~- 234 (464)
T 3v7d_B 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIV-TG-SRDN--TLHVWKL- 234 (464)
T ss_dssp CSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEE-EE-ETTS--CEEEEEC-
T ss_pred CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEE-EE-cCCC--cEEEeeC-
Confidence 455677776664 3777778889999999999998888874 556677777765333 3333 21 1222 2332222
Q ss_pred hhhhhhCCCC------C----------CCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--c
Q 020609 172 IEYIRRGKPD------A----------GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 233 (323)
Q Consensus 172 i~~i~~Gk~~------~----------g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--d 233 (323)
..++.- . +.+.+....-.+.+.+.-=..++..++.-..++..++||+.+-+++..+. .
T Consensus 235 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 235 ----PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ----CCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ----CCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 111110 0 01112222233344333334556777777889999999999999998886 4
Q ss_pred cceeeEEEcCC-EEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccce
Q 020609 234 KNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 234 e~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
..+..+.++|. -.++.-.. .+. ++|+++++|+.+..+.. +...+.-+..-+.+|+.=-.+..+++||+.+.+.
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~-dg~--i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASM-DTT--IRIWDLENGELMYTLQG---HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp SCEEEEEEETTTTEEEEEET-TSC--EEEEETTTTEEEEEECC---CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCEEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCcEEEEEeC---CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCce
Confidence 56788888753 33333322 222 78999999999988762 3455555555567788888999999999988653
No 4
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.0032 Score=55.57 Aligned_cols=180 Identities=14% Similarity=0.064 Sum_probs=114.9
Q ss_pred eecccccEEEEEeCCCCceEEEEEeec-CCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeE
Q 020609 120 FCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFV 198 (323)
Q Consensus 120 f~r~tn~~iC~LN~s~dEvIrSiFyNk-~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFV 198 (323)
++ .+|+.+..+...+...|.+|=++. ..+-|++.| .|. ..+.-+++....|+.......+. --...--+
T Consensus 48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s---~dg----~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~ 117 (437)
T 3gre_A 48 GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGS---DQG----VIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQI 117 (437)
T ss_dssp GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE---TTS----EEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEE
T ss_pred cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEec---CCc----eEEEeECcccccCcccceeeecc--CCCCEEEE
Confidence 44 579999999888888999999998 666666644 333 44555555555565322222221 11112245
Q ss_pred EecCCCceEEEEecCCCeEEEEecc---CcEEEEEecccceeeEEEcC-----------------CEEEEEEecCCCeee
Q 020609 199 EFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKNVQEIKISP-----------------GIMLLIFTKASGHVP 258 (323)
Q Consensus 199 EFDdvN~kilty~aq~~~YrVfdlk---nYs~LYsIsde~VqEIkIS~-----------------Gimll~~q~~~~~iP 258 (323)
.|.. +++.++-...|+..++||+. +-..+-......+..+.+++ |-+++.-... + -
T Consensus 118 ~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~--~ 193 (437)
T 3gre_A 118 TMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL-S--R 193 (437)
T ss_dssp EECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT-S--E
T ss_pred EEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC-C--e
Confidence 7775 66667667789999999995 44455555555666776664 4444433332 2 3
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccceee
Q 020609 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 259 lkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
++|+++.+|+.+..+....| ...|.-+. .-+..|+.=-++..+++||+++.++..
T Consensus 194 i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 194 VIIFDIRTLERLQIIENSPR-HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp EEEEETTTCCEEEEEECCGG-GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEeCCCCeeeEEEccCCC-CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 68999999999988874212 33333222 126678888899999999999877654
No 5
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.87 E-value=0.0016 Score=58.26 Aligned_cols=191 Identities=17% Similarity=0.268 Sum_probs=126.5
Q ss_pred cccceeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 94 kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
....|..+-...++++.-...|....||..+++.+..+.. +...|.++-++. +.+++.| .|. .++.-
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~l~s~s---~dg--~i~~w----- 224 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHE--KRVVSGS---RDA--TLRVW----- 224 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET--TEEEEEE---TTS--EEEEE-----
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEecC--CEEEEEe---CCC--EEEEE-----
Confidence 3456666666778888888899999999999998888874 455677887753 4444433 222 22222
Q ss_pred hhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEE
Q 020609 174 YIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll 248 (323)
++..|+ ++..- -.+.+ -+.| +|..++....++..++||+++-+.+.++. ...+..+.+.+..+ +
T Consensus 225 d~~~~~-----~~~~~--~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l-~ 293 (445)
T 2ovr_B 225 DIETGQ-----CLHVL--MGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV-V 293 (445)
T ss_dssp ESSSCC-----EEEEE--ECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEE-E
T ss_pred ECCCCc-----EEEEE--cCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEE-E
Confidence 222222 12111 11233 2344 56677777789999999999999998886 35677888844443 3
Q ss_pred EEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
.-.... . ++++++.+|+.+..+.. | ...+.-+..-+..|+.=-.+..+++||+.+.++..
T Consensus 294 ~~~~d~-~--i~i~d~~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 353 (445)
T 2ovr_B 294 SGSLDT-S--IRVWDVETGNCIHTLTG--H-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 353 (445)
T ss_dssp EEETTS-C--EEEEETTTCCEEEEECC--C-CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEeCCC-e--EEEEECCCCCEEEEEcC--C-cccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 333322 2 68999999999987752 2 33444445567788888899999999998877654
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.86 E-value=0.0056 Score=52.46 Aligned_cols=188 Identities=14% Similarity=0.180 Sum_probs=121.1
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
...++.-...|....||..+++.+..+.. +...|.+|-++..+..|++.| ++ ..++ .- +++.+.
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs----~D-~~v~--lW---d~~~~~----- 130 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS----DD-LTVK--LW---NWENNW----- 130 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE----TT-SCEE--EE---EGGGTT-----
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEeC-CCCcEEEEEEcCCCCEEEEEC----CC-CeEE--EE---ECCCCc-----
Confidence 45666667788999999999998888865 455689999998887776544 33 2222 22 223221
Q ss_pred cceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc---cceeeEEEcC---CEEEEEEecCCC
Q 020609 185 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKISP---GIMLLIFTKASG 255 (323)
Q Consensus 185 ~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd---e~VqEIkIS~---Gimll~~q~~~~ 255 (323)
.+- ...-.|.+. +.|+..++..++-...|+..++||+.+-...+.+.. ..+.-+.+++ +-+|+.--. .+
T Consensus 131 ~~~-~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-D~ 208 (304)
T 2ynn_A 131 ALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DL 208 (304)
T ss_dssp EEE-EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET-TS
T ss_pred chh-hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC-CC
Confidence 111 111124443 568877888888788899999999988776666643 3355555543 334333222 22
Q ss_pred eeeEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEeccccceeee
Q 020609 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 256 ~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
-++|.++++|+++..+.. +...+..+.-. +..|+-=-++..++|||+.+.++...
T Consensus 209 --~i~iWd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 209 --TIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp --EEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --eEEEEeCCCCccceeeCC---CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 378999999999887762 24444433222 23466666899999999998877643
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.86 E-value=0.0011 Score=58.75 Aligned_cols=219 Identities=8% Similarity=0.073 Sum_probs=130.8
Q ss_pred ceeeeccCCCCcccccccccccccceeEEeecc--chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCe
Q 020609 73 QEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDS 150 (323)
Q Consensus 73 ~~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdS 150 (323)
...||+-..+......++...-...|.-+-+.. ..++.-...|....||..+++.+..++. +...|.++-++..++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCc
Confidence 345555444332222222222345566665553 4677777889999999999999988865 4556889988887776
Q ss_pred EEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q 020609 151 LITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (323)
Q Consensus 151 lItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYs 230 (323)
++. +...|. .+.+=+++.|++-....+. ..-..+--+.|.+.++.+++....++..++||+++-+++..
T Consensus 196 ~~~--s~~~dg-------~v~~wd~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 196 IFL--SCGEDG-------RILLWDTRKPKPATRIDFC--ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp CEE--EEETTS-------CEEECCTTSSSCBCBCCCT--TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred eee--eeccCC-------ceEEEECCCCceeeeeeec--cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 655 223343 2223344545432111111 11122335778888888888888899999999999887666
Q ss_pred ec--ccceeeEEEcC-C-EEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeE-EEecCCcee
Q 020609 231 IS--DKNVQEIKISP-G-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLL-VKQENENLQ 303 (323)
Q Consensus 231 Is--de~VqEIkIS~-G-imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLL-IKQE~~~Lq 303 (323)
+. ...|..+.++| | -+|+.--. .. -++|.++++|+++..+. ++..|.=+. +.++++| -==.|..++
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~-D~--~i~iwd~~~~~~~~~~~----H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISE-DC--TVAVLDADFSEVFRDLS----HRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEET-TS--CEEEECTTSCEEEEECC----CSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeC-CC--EEEEEECCCCcEeEECC----CCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 54 56788888885 3 34443322 22 26899999999887543 344443332 1234444 456899999
Q ss_pred EEecccc
Q 020609 304 ILDESNS 310 (323)
Q Consensus 304 I~Dl~~~ 310 (323)
+||+.+.
T Consensus 338 iW~~~~~ 344 (357)
T 4g56_B 338 HHHLPSE 344 (357)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9999654
No 8
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.82 E-value=0.0015 Score=58.51 Aligned_cols=191 Identities=12% Similarity=0.196 Sum_probs=124.8
Q ss_pred cccceeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 94 kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
....|..+-...+++++-...|....||..+++.+..+.. +.+.|.++-++. +.+++.| .|. .++.-
T Consensus 172 h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s---~dg--~i~vw----- 238 (435)
T 1p22_A 172 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRFNN--GMMVTCS---KDR--SIAVW----- 238 (435)
T ss_dssp CSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEECCT--TEEEEEE---TTS--CEEEE-----
T ss_pred CCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEEcC--CEEEEee---CCC--cEEEE-----
Confidence 3456777766677888888899999999999998888874 555678888763 4444432 232 23322
Q ss_pred hhhhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEE
Q 020609 174 YIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll 248 (323)
++..++. .-.......|.+- +.| +++.++....|+..++||+++.+++..+. ...+..+..++..++.
T Consensus 239 d~~~~~~----~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 311 (435)
T 1p22_A 239 DMASPTD----ITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS 311 (435)
T ss_dssp ECSSSSC----CEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEE
T ss_pred eCCCCCC----ceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEE
Confidence 2222221 0011112223333 344 56667767789999999999999888876 3557777776665543
Q ss_pred EEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccc
Q 020609 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
-. ..+ -++|+++.+|+.+..+.. +...+.-+..-+..|+.=-.+..+++||+.+.+
T Consensus 312 g~--~dg--~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 312 GS--SDN--TIRLWDIECGACLRVLEG---HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EE--TTS--CEEEEETTTCCEEEEECC---CSSCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred Ee--CCC--eEEEEECCCCCEEEEEeC---CcCcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 32 222 378999999999988762 234443333357778888899999999998765
No 9
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.81 E-value=0.003 Score=56.42 Aligned_cols=193 Identities=12% Similarity=0.173 Sum_probs=125.5
Q ss_pred ccceeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020609 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (323)
Q Consensus 95 RS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~ 174 (323)
...|..+-...+.+++-...|....||..+++.+..+... ...|.++-++ .+.+++.| .|. .++. . +
T Consensus 199 ~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~~~~---~dg--~i~i--w---d 265 (445)
T 2ovr_B 199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQYD--GRRVVSGA---YDF--MVKV--W---D 265 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEEC--SSCEEEEE---TTS--CEEE--E---E
T ss_pred CCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEEC--CCEEEEEc---CCC--EEEE--E---E
Confidence 4556666666778888888999999999999998888754 4456677662 33444322 222 2222 2 2
Q ss_pred hhhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcCCEEEEE
Q 020609 175 IRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLI 249 (323)
Q Consensus 175 i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~Gimll~ 249 (323)
++.|+. +.+-. .+++- +.| ++..++....++..++||+.+-+++..+.. ..+..+..+++.++.-
T Consensus 266 ~~~~~~-----~~~~~--~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 335 (445)
T 2ovr_B 266 PETETC-----LHTLQ--GHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG 335 (445)
T ss_dssp GGGTEE-----EEEEC--CCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEE
T ss_pred CCCCcE-----eEEec--CCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEE
Confidence 232221 11110 12222 334 566677777899999999999998888753 4466677777755332
Q ss_pred EecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 250 ~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
. ..+ -++++++.+|+.+..+...-.+...+.-+..-+.+|+.=-++..++|||+.+.++..
T Consensus 336 ~--~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 336 N--ADS--TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp E--TTS--CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred e--CCC--eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence 2 222 368899999999988864222345554444456778888899999999999887654
No 10
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.0052 Score=50.46 Aligned_cols=213 Identities=11% Similarity=0.176 Sum_probs=123.9
Q ss_pred cceeEEeec-cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEe------cCC------C
Q 020609 96 SKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYA------SDN------F 162 (323)
Q Consensus 96 S~V~EIv~a-~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~------sd~------f 162 (323)
.+|.-+... ...++.-...|....||..+++....+... ...|.++-++...+.|++.+.-. -.+ .
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 344444332 446777778899999999999888877755 56788898888777776644210 000 1
Q ss_pred ceeeeeeeehhhhh-hCCC-----CCC-Ccceee-----cccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEE
Q 020609 163 SSLRCRSTRIEYIR-RGKP-----DAG-FALFES-----ESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM 227 (323)
Q Consensus 163 S~LkCr~~~i~~i~-~Gk~-----~~g-~~LFe~-----~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~ 227 (323)
..++.+.-++..+. .|+. ..| -.++.. ..-.+.+ -+.|...++..++....++..++||......
T Consensus 98 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 177 (313)
T 3odt_A 98 YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIK 177 (313)
T ss_dssp CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEE
T ss_pred cchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEE
Confidence 11111111111000 0000 000 001110 0001222 2355555666777777899999999776666
Q ss_pred EEEe-cccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhc-cceeEEEecCCceeEE
Q 020609 228 LYSI-SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQIL 305 (323)
Q Consensus 228 LYsI-sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f-~EkLLIKQE~~~LqI~ 305 (323)
.+.. ....+..+.++|+--++.-. ..+ -++++++.+|+.+..+.. | ...+.-+.-. +.+|+.=-.+..+.+|
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~~~~-~dg--~i~i~d~~~~~~~~~~~~--~-~~~i~~~~~~~~~~l~~~~~dg~v~iw 251 (313)
T 3odt_A 178 TFSGIHNDVVRHLAVVDDGHFISCS-NDG--LIKLVDMHTGDVLRTYEG--H-ESFVYCIKLLPNGDIVSCGEDRTVRIW 251 (313)
T ss_dssp EECSSCSSCEEEEEEEETTEEEEEE-TTS--EEEEEETTTCCEEEEEEC--C-SSCEEEEEECTTSCEEEEETTSEEEEE
T ss_pred EEeccCcccEEEEEEcCCCeEEEcc-CCC--eEEEEECCchhhhhhhhc--C-CceEEEEEEecCCCEEEEecCCEEEEE
Confidence 6666 66778888887543333322 233 378999999999988762 2 3333323222 2268888899999999
Q ss_pred eccccceeee
Q 020609 306 DESNSGCLEL 315 (323)
Q Consensus 306 Dl~~~~l~ev 315 (323)
|+.+.++...
T Consensus 252 d~~~~~~~~~ 261 (313)
T 3odt_A 252 SKENGSLKQV 261 (313)
T ss_dssp CTTTCCEEEE
T ss_pred ECCCCceeEE
Confidence 9999876654
No 11
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00058 Score=60.31 Aligned_cols=206 Identities=14% Similarity=0.174 Sum_probs=125.2
Q ss_pred ccceeEEeecc---chhhhhhccccceeeeccc---cc-EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeee
Q 020609 95 RSKIIEIVAAR---DIVFALAQSGVCAAFCRET---NQ-RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC 167 (323)
Q Consensus 95 RS~V~EIv~a~---diI~aL~~sG~c~af~r~t---n~-~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkC 167 (323)
...|..+-+.. .+++.-...|....||..+ ++ ..|.+...+..-|.++-++...+.|++.| .|. .++.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~dg--~i~v 137 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS---KDG--QIIV 137 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE---TTS--EEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe---CCC--EEEE
Confidence 35666666655 3677777889999999887 54 22333334677899999998777666644 222 2322
Q ss_pred eeeehhhhhhCCCCCCCcceeec---ccC-----CCCeE---E-ecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--
Q 020609 168 RSTRIEYIRRGKPDAGFALFESE---SLK-----WPGFV---E-FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-- 233 (323)
Q Consensus 168 r~~~i~~i~~Gk~~~g~~LFe~~---~L~-----~PgFV---E-FDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-- 233 (323)
-.+ +.-..|+. ...+... .+. ..+++ . +...++..++....++..++||+++.+++..+..
T Consensus 138 wd~--~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 138 LKV--NHYQQESE---VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp EEE--EEEEETTE---EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred EEe--ccccCCce---eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 222 11112221 0000000 000 11111 1 1124577888888899999999999999999865
Q ss_pred --cceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh---h---ccceeEEEecCCceeE
Q 020609 234 --KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE---Q---FNEKLLVKQENENLQI 304 (323)
Q Consensus 234 --e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE---~---f~EkLLIKQE~~~LqI 304 (323)
..|..+.++| |-.|+.-... +. ++|.++.+|+.+..+.+ ....+|.-+. . -+..|+.=-.+..++|
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTR-GI--IDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETT-SC--EEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCC-Ce--EEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 6788888875 4444433332 22 68999999999987753 2233433331 1 1346667778889999
Q ss_pred Eeccccceeee
Q 020609 305 LDESNSGCLEL 315 (323)
Q Consensus 305 ~Dl~~~~l~ev 315 (323)
||+.+.++...
T Consensus 288 wd~~~~~~~~~ 298 (437)
T 3gre_A 288 WNFVKGHCQYA 298 (437)
T ss_dssp EETTTTEEEEE
T ss_pred EEcCCCcEEEE
Confidence 99998876554
No 12
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.0087 Score=49.98 Aligned_cols=209 Identities=11% Similarity=0.145 Sum_probs=127.1
Q ss_pred cccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeee
Q 020609 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 94 kRS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (323)
....|..+... ...++.....|....||..+++.+..+. ...-|.++-++..+..+++.+.-....-..++...+
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~- 149 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI- 149 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE-
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe-
Confidence 34566666655 4577777888999999999999988887 566788999998877776644210000022222222
Q ss_pred hhhhhhCCCCCC------Cc---ceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccC-cEEEEEec--ccceeeE
Q 020609 172 IEYIRRGKPDAG------FA---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSIS--DKNVQEI 239 (323)
Q Consensus 172 i~~i~~Gk~~~g------~~---LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlkn-Ys~LYsIs--de~VqEI 239 (323)
..++.... .+ +.........--+.|+. +|+.++....++..++||+++ ...+..+. ...|..+
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 150 ----ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp ----EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred ----cCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 22211000 01 11111111334556665 566777778899999999998 88776665 5678888
Q ss_pred EEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCC--------------ceeE
Q 020609 240 KISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE--------------NLQI 304 (323)
Q Consensus 240 kIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~--------------~LqI 304 (323)
.++| |-+|+.-. ..+ -+.++++.+|+.+..+.+. ..-..+.| -.-+..|++--.+. .+++
T Consensus 225 ~~~~~~~~l~~~~-~d~--~i~v~d~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 225 QFSPDLTYFITSS-RDT--NSFLVDVSTLQVLKKYETD-CPLNTAVI-TPLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp EECTTSSEEEEEE-TTS--EEEEEETTTCCEEEEEECS-SCEEEEEE-CSSSSEEEEEECCC-------------CEEEE
T ss_pred EECCCCCEEEEec-CCc--eEEEEECCCCceeeeecCC-CCceeEEe-cCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 8884 44444332 333 3688999999999877631 11122222 12345555544444 7999
Q ss_pred Eeccccceeee
Q 020609 305 LDESNSGCLEL 315 (323)
Q Consensus 305 ~Dl~~~~l~ev 315 (323)
||+.+.+....
T Consensus 300 ~d~~~~~~~~~ 310 (369)
T 3zwl_B 300 YHKIFEEEIGR 310 (369)
T ss_dssp EETTTCCEEEE
T ss_pred EecCCCcchhh
Confidence 99988776543
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.69 E-value=0.003 Score=56.53 Aligned_cols=221 Identities=11% Similarity=0.092 Sum_probs=131.4
Q ss_pred ceeeeccCCCCcccccccccccccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCe
Q 020609 73 QEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDS 150 (323)
Q Consensus 73 ~~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdS 150 (323)
.+.||+-..+..........--...|.-+-+. ...++.-...|....||..+++.+..+.. +..-|.++-++..+.+
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCC
Confidence 35566544433222221111224556666554 34667677889999999999998888864 5566788888887776
Q ss_pred EEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q 020609 151 LITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (323)
Q Consensus 151 lItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYs 230 (323)
++. +...|. .++ +=+++.|+.-. .+.....-..+--+.|...++++++.-..|+..++||+++-+++.+
T Consensus 184 ~l~--s~s~D~--~v~-----iwd~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 184 VFL--SCSEDN--RIL-----LWDTRCPKPAS--QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EEE--EEETTS--CEE-----EEETTSSSCEE--ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred cee--eecccc--ccc-----cccccccceee--eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 554 122232 222 22444444210 1111111112234678888899988888999999999999998887
Q ss_pred ec--ccceeeEEEcC-C-EEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEE-ecCCcee
Q 020609 231 IS--DKNVQEIKISP-G-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVK-QENENLQ 303 (323)
Q Consensus 231 Is--de~VqEIkIS~-G-imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIK-QE~~~Lq 303 (323)
+. ...|..+.++| | -+|+.--. .+. ++|.++.+|+.+... .++..|.=+. .-+++||.- =+|..++
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~-D~~--i~vwd~~~~~~~~~~----~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSE-DCS--LAVLDSSLSELFRSQ----AHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEET-TSC--EEEECTTCCEEEEEC----CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeC-CCe--EEEEECCCCcEEEEc----CCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 76 46788889985 3 34333222 222 688999999876522 2344443232 235677754 5899999
Q ss_pred EEeccccce
Q 020609 304 ILDESNSGC 312 (323)
Q Consensus 304 I~Dl~~~~l 312 (323)
+||+-+..+
T Consensus 326 ~w~v~~~~~ 334 (344)
T 4gqb_B 326 HHVVPTEPL 334 (344)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 999987654
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.66 E-value=0.014 Score=49.19 Aligned_cols=194 Identities=15% Similarity=0.256 Sum_probs=123.8
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020609 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (323)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~ 174 (323)
+|..+-.. ...++.-...|....|+..+++.+..+.. +..-|.++-++...+.|++.| .|. .++. - +
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~---~d~--~i~v--w---d 93 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSAS---DDK--TLKI--W---D 93 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--EEEE--E---E
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEEC---CCC--EEEE--E---E
Confidence 44444433 34566667788999999999999888865 445578898988777666643 222 2222 2 2
Q ss_pred hhhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEE
Q 020609 175 IRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLL 248 (323)
Q Consensus 175 i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll 248 (323)
+..|+. +.. .-.|.+. +.|.. ++..++....++..++||+++-+++..+.. ..+..+.++| |-+++
T Consensus 94 ~~~~~~-----~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 94 VSSGKC-----LKT--LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp TTTCCE-----EEE--EECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCcE-----EEE--EcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 333321 111 0123333 35655 455556667899999999999998888763 5678888874 44433
Q ss_pred EEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccceee
Q 020609 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
.--. .+ -++++++.+|+.+..+.. +...++..+. .-+.+|+.=-.+..+++||+.+.++..
T Consensus 166 ~~~~-d~--~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 166 SSSY-DG--LCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp EEET-TS--CEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEeC-CC--cEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 3322 23 268899999998876642 3334444332 235678888899999999999887654
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.65 E-value=0.019 Score=48.44 Aligned_cols=197 Identities=17% Similarity=0.272 Sum_probs=123.6
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
...|..+... ..+++.-...|....||..+++.+..+.. +...|.++-++.....|++.| .|. .++.-
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~---~d~----~i~iw-- 134 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGS---FDE----SVRIW-- 134 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE---TTS----CEEEE--
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEe---CCC----cEEEE--
Confidence 3456666554 34677777889999999999998887765 455678888888777766644 222 22222
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc---ceeeEEEcC-CE
Q 020609 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKISP-GI 245 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde---~VqEIkIS~-Gi 245 (323)
+++.|+. +..-. .+.+ -+.|+. +|+.++....++..++||+++-+.+..+... .+.-+.++| |-
T Consensus 135 -d~~~~~~-----~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (312)
T 4ery_A 135 -DVKTGKC-----LKTLP--AHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205 (312)
T ss_dssp -ETTTCCE-----EEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS
T ss_pred -ECCCCEE-----EEEec--CCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC
Confidence 2333321 11110 1122 245654 5667777778999999999999988887543 355566764 33
Q ss_pred EEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCc--c--hhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK--V--DFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~--i--qFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
+|+.- ...+ -++|+++.+|+.+..+.. |.... + .|--.-+..|+.=-++..+++||+.+.++...
T Consensus 206 ~l~~~-~~d~--~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 206 YILAA-TLDN--TLKLWDYSKGKCLKTYTG--HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp EEEEE-ETTT--EEEEEETTTTEEEEEECS--SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred EEEEE-cCCC--eEEEEECCCCcEEEEEEe--cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 43332 2333 368899999999887752 21111 1 11112244566667889999999999887653
No 16
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.62 E-value=0.0022 Score=55.17 Aligned_cols=206 Identities=9% Similarity=0.040 Sum_probs=122.9
Q ss_pred cceeEEeeccchhhhhhccccceeeeccccc------EEEEEeCCCCceEEEEEeecC----C---CeEEEEEeEecCCC
Q 020609 96 SKIIEIVAARDIVFALAQSGVCAAFCRETNQ------RICFLNVTADEVIRSLFYNKN----N---DSLITVSVYASDNF 162 (323)
Q Consensus 96 S~V~EIv~a~diI~aL~~sG~c~af~r~tn~------~iC~LN~s~dEvIrSiFyNk~----N---dSlItvSvy~sd~f 162 (323)
..|.-+-...+++++-...|....||..+++ .+..+. .+..-|.++-++.. . +.|++.| .|.
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~---~dg- 91 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS---FSG- 91 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE---TTS-
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc---CCC-
Confidence 3455555555677777788999999999988 566665 45566888888887 4 4444432 232
Q ss_pred ceeeeeeeehhhhhhCCCCCCCcceeeccc------CCCCeEEecC---CCceE-EEEecCCCeEEEEeccC------cE
Q 020609 163 SSLRCRSTRIEYIRRGKPDAGFALFESESL------KWPGFVEFDD---VNGKV-LTYSAQDSIYKVFDLKN------YT 226 (323)
Q Consensus 163 S~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L------~~PgFVEFDd---vN~ki-lty~aq~~~YrVfdlkn------Ys 226 (323)
.++...+ ..++......+..-... ...--+.|.. .+++. ++....++..++||+.+ -+
T Consensus 92 -~i~iw~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 92 -DLLFYRI-----TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp -CEEEEEE-----EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred -CEEEEEc-----cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 3333332 22221110001111111 2233467772 34565 77677899999999998 45
Q ss_pred EEE-----Ee---------cccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeecccc---CCcchhhh--
Q 020609 227 MLY-----SI---------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR---NKKVDFIE-- 287 (323)
Q Consensus 227 ~LY-----sI---------sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~---sk~iqFiE-- 287 (323)
.+. .+ ....+..+.++|.- +++.-...+. +.++++.+++.+..+.....+ ..++.-+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT--VQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE--EEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc--EEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 444 44 46778999999644 3444334443 788999999998877631001 33332222
Q ss_pred hccceeEEEecC---CceeEEeccccceeee
Q 020609 288 QFNEKLLVKQEN---ENLQILDESNSGCLEL 315 (323)
Q Consensus 288 ~f~EkLLIKQE~---~~LqI~Dl~~~~l~ev 315 (323)
.-+..|+.--++ ..+++||+.+.+....
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGS 273 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCcccce
Confidence 135677777777 8999999998776543
No 17
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.58 E-value=0.0011 Score=55.48 Aligned_cols=193 Identities=14% Similarity=0.110 Sum_probs=118.2
Q ss_pred cceeEEeeccc------hhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeec-CCCeEEEEEeEecCCCceeeee
Q 020609 96 SKIIEIVAARD------IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCR 168 (323)
Q Consensus 96 S~V~EIv~a~d------iI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk-~NdSlItvSvy~sd~fS~LkCr 168 (323)
..|..+-...+ ++++-...|....||..+++.+..+.. +..-|.++-++. ...-|++.| .|. .++.
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~---~dg--~i~i- 142 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVS---KDH--ALRL- 142 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEE---TTS--CEEE-
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEe---CCC--eEEE-
Confidence 44666666555 677778889999999999999998874 556789998988 444444432 232 2222
Q ss_pred eeehhhhhhCCCCCCCcceee----cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe-------------
Q 020609 169 STRIEYIRRGKPDAGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------------- 231 (323)
Q Consensus 169 ~~~i~~i~~Gk~~~g~~LFe~----~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI------------- 231 (323)
- +++.|+ ++..- ..-...--+.|+. +|+.++....++..++||+++-+.+..+
T Consensus 143 -w---d~~~~~-----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 143 -W---NIQTDT-----LVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp -E---ETTTTE-----EEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred -E---EeecCe-----EEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 2 222222 12211 1111223356766 5556666667999999999987654333
Q ss_pred -----------------cccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCce--------------eeeeeeccccC
Q 020609 232 -----------------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV--------------LKSFNHLLHRN 280 (323)
Q Consensus 232 -----------------sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~--------------l~~~~~~L~~s 280 (323)
....|..+.+++..+ +.--. .+. ++++++.+++. +..+. .+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 285 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLI-LSKSC-ENA--IVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQ 285 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEETTEE-EEECS-SSE--EEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSS
T ss_pred cccceeeccCccccccCCcceEEEEEEcCCEE-EEEec-CCE--EEEEeCCCccccccccccCCcchheecccc---ccC
Confidence 446677788886544 33222 332 67889888865 33332 123
Q ss_pred Ccchhhhhc----cceeEEEecCCceeEEeccccce
Q 020609 281 KKVDFIEQF----NEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 281 k~iqFiE~f----~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
..+..+... +..|+.=-++..+++||+.+.+.
T Consensus 286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 333333322 56677788899999999998754
No 18
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.57 E-value=0.0088 Score=51.58 Aligned_cols=183 Identities=11% Similarity=0.120 Sum_probs=118.6
Q ss_pred hccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecc
Q 020609 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (323)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~ 191 (323)
...|...+||..+++.+..+.... -+.++-++..++.|++. .+++ ..++ ..+ +..|+ .+-....
T Consensus 51 ~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~---~~~~-~~v~--v~d---~~~~~-----~~~~~~~ 114 (391)
T 1l0q_A 51 AHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVT---NMAS-STLS--VID---TTSNT-----VAGTVKT 114 (391)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEE---ETTT-TEEE--EEE---TTTTE-----EEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEE---ECCC-CEEE--EEE---CCCCe-----EEEEEeC
Confidence 367889999999999988887654 78899998877766553 2222 2232 222 22222 1211112
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCce
Q 020609 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTV 269 (323)
Q Consensus 192 L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~ 269 (323)
-..|--+.|+..+..++.-...++..++||+.+-+.+..+. +..+..+.++| |-.|++.....+. +.++++.+|+.
T Consensus 115 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~--v~~~d~~~~~~ 192 (391)
T 1l0q_A 115 GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS--ISVIDTVTNSV 192 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTE--EEEEETTTTEE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCE--EEEEECCCCeE
Confidence 23455677877666665556779999999999998887776 46678888884 4344444444444 67899999998
Q ss_pred eeeeeeccccCCcchhhhhccceeEEEe---cCCceeEEeccccceee
Q 020609 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDESNSGCLE 314 (323)
Q Consensus 270 l~~~~~~L~~sk~iqFiE~f~EkLLIKQ---E~~~LqI~Dl~~~~l~e 314 (323)
+..+.+. ..-..+.| -.-+.+|++-- .+..+.+||+.+.++..
T Consensus 193 ~~~~~~~-~~~~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~ 238 (391)
T 1l0q_A 193 IDTVKVE-AAPSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (391)
T ss_dssp EEEEECS-SEEEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred EEEEecC-CCccceEE-CCCCCEEEEEecCcCCCcEEEEECCCCeEEE
Confidence 8766531 11122232 22366788876 58899999999876543
No 19
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.56 E-value=0.0021 Score=53.84 Aligned_cols=199 Identities=13% Similarity=0.166 Sum_probs=127.3
Q ss_pred ccceeEEeec------cchhhhhhccccceeeecccccEEEEEeC----CCCceEEEEEeecCCC---eEEEEEeEecCC
Q 020609 95 RSKIIEIVAA------RDIVFALAQSGVCAAFCRETNQRICFLNV----TADEVIRSLFYNKNND---SLITVSVYASDN 161 (323)
Q Consensus 95 RS~V~EIv~a------~diI~aL~~sG~c~af~r~tn~~iC~LN~----s~dEvIrSiFyNk~Nd---SlItvSvy~sd~ 161 (323)
..+|.-|-+. +..+++-+..|....||..+++.+..+.. ..++-|.++-++...+ .++.+. ..|.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~--~~dg 95 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA--GSRG 95 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE--ETTC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe--cCCC
Confidence 3455555554 45577777788889999999988776654 3557788988888754 344321 2232
Q ss_pred CceeeeeeeehhhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe-----cc
Q 020609 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SD 233 (323)
Q Consensus 162 fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI-----sd 233 (323)
.++.- ++..|+ ++..-. .+.+ -+.|...++..++....++..++||+++-+.+..+ ..
T Consensus 96 --~i~v~-----d~~~~~-----~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 96 --IIRII-----NPITMQ-----CIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp --EEEEE-----CTTTCC-----EEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred --EEEEE-----Echhce-----Eeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 22222 223232 222111 1333 45688778888888888999999999999998888 56
Q ss_pred cceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeee-------------------------ccccCCcchhhh
Q 020609 234 KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-------------------------LLHRNKKVDFIE 287 (323)
Q Consensus 234 e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~-------------------------~L~~sk~iqFiE 287 (323)
..|..+.++| |-.++.-.. .+ -++++++.+++.+..+.. ...+...+.-+.
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGM-DH--SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCEEEEEECTTSSEEEEEET-TS--CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred CceeEEEECCCCCEEEEecC-CC--CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 6788888875 334333332 22 368899998887654331 000233443333
Q ss_pred hccceeEEEecCCceeEEeccccce
Q 020609 288 QFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 288 ~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
-.++.|+.--.+..+++||+.+.+.
T Consensus 239 ~~~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 239 WLGDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp EETTEEEEECSSSEEEEEEESSTTC
T ss_pred EcCCEEEEEecCCEEEEEeCCCccc
Confidence 3477888888999999999987643
No 20
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.55 E-value=0.031 Score=49.44 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=124.9
Q ss_pred cccceeEEeeccchhhhhhccccceeeeccc-ccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 94 kRS~V~EIv~a~diI~aL~~sG~c~af~r~t-n~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
....|..+-...++++.-...|....||..+ ++.+..+.. +..-|.++-++.....|++.| .|. . ++..
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~---~d~--~--v~iw-- 244 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGLQLASGG---NDN--V--VQIW-- 244 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEE---TTS--C--EEEE--
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcC-CCCCeeEEEEcCCCCEEEEEe---CCC--e--EEEc--
Confidence 3455666666667777778888889999874 454555544 556788888888665555533 222 2 2222
Q ss_pred hhhhhCCCCCCCcceee-cccCCCCeEEecCCCceEEEEec--CCCeEEEEeccCcEEEEEecc-cceeeEEEcC-CEEE
Q 020609 173 EYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISD-KNVQEIKISP-GIML 247 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~-~~L~~PgFVEFDdvN~kilty~a--q~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~-Giml 247 (323)
+++.+ .+++.- ..-.+.--+.|...+..+++... .++..++||+.+-+.+..+.. ..+..+.++| |-.+
T Consensus 245 -d~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l 318 (401)
T 4aez_A 245 -DARSS-----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEI 318 (401)
T ss_dssp -ETTCS-----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEE
T ss_pred -cCCCC-----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeE
Confidence 23322 233332 12233445788877777776554 799999999999998888753 4578888874 3343
Q ss_pred EEEec-CCCeeeEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEeccccceee
Q 020609 248 LIFTK-ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 248 l~~q~-~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
+..-. ..+ -++|+++.+|+........ .+...+--+.. -+..|+.--.++.|++||+.+.++..
T Consensus 319 ~~~~g~~dg--~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 319 MSTHGFPDN--NLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEECTTTC--EEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EEEeecCCC--cEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 33322 333 3788999998877765532 22444433332 24567777789999999999887654
No 21
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.54 E-value=0.01 Score=51.17 Aligned_cols=188 Identities=12% Similarity=0.127 Sum_probs=117.8
Q ss_pred hhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcce
Q 020609 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (323)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LF 187 (323)
+++-...|...+||..+++.+..+.... -+.++-++.....|.+.+ ..|. ..+.. ++..|+. +-
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~--~~d~----~i~v~---d~~~~~~-----~~ 68 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVAN--AHSN----DVSII---DTATNNV-----IA 68 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEE--GGGT----EEEEE---ETTTTEE-----EE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEEC--CCCC----eEEEE---ECCCCeE-----EE
Confidence 3444566888999999999888887543 378999998777664422 1222 22223 2222322 11
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEee
Q 020609 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 188 e~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIe 265 (323)
.-..-..|--+.|+..+..+.+....++..++||+.+-+.+..+. ...+..+.++| |-.+++.....+ -+.++++.
T Consensus 69 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~v~~~d~~ 146 (391)
T 1l0q_A 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK--TVSVINTV 146 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT--EEEEEETT
T ss_pred EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCC--EEEEEECC
Confidence 111112566788988777776767778999999999988776665 35677888874 434333333333 46789999
Q ss_pred cCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEeccccceeee
Q 020609 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDESNSGCLEL 315 (323)
Q Consensus 266 dG~~l~~~~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~l~ev 315 (323)
+|+.+..+..- ..-..+.|- .-+.+|++- ..+..+.+||+.+.++...
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 195 (391)
T 1l0q_A 147 TKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDT 195 (391)
T ss_dssp TTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcEEEEEecC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 99988876531 111222221 224567555 4667899999998876543
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.53 E-value=0.01 Score=49.11 Aligned_cols=188 Identities=19% Similarity=0.178 Sum_probs=117.4
Q ss_pred hhhhhhccccceeeecccccEE---EEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCC
Q 020609 107 IVFALAQSGVCAAFCRETNQRI---CFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~i---C~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~ 182 (323)
++++-. .|....||..+++.. ..+.. .+..-|.++-++...+.|++.+ .| ..++...+ ..++.
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d--~~i~~~d~-----~~~~~-- 131 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG---EA--STLSIWDL-----AAPTP-- 131 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE---SS--SEEEEEEC-----CCC----
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc---CC--CcEEEEEC-----CCCCc--
Confidence 444444 788899998877633 33332 5777899999999777666643 22 22333222 21210
Q ss_pred CCcceeecccCCC---CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCe
Q 020609 183 GFALFESESLKWP---GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGH 256 (323)
Q Consensus 183 g~~LFe~~~L~~P---gFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~ 256 (323)
..... .-.+. --+.|.. +++.++....++..++||+++-+.+..+. ...+..+.++| |-.++.-. ..+
T Consensus 132 -~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg- 205 (337)
T 1gxr_A 132 -RIKAE--LTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDN- 205 (337)
T ss_dssp -EEEEE--EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTS-
T ss_pred -ceeee--cccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCC-
Confidence 01111 11122 2356665 56666666788999999999999888876 46688888984 43444433 233
Q ss_pred eeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeeec
Q 020609 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLELS 316 (323)
Q Consensus 257 iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~ 316 (323)
.+.++++.+|+.+..+.+. ..-..+.|- .-+..|++--++..+++||+.+.++....
T Consensus 206 -~i~~~d~~~~~~~~~~~~~-~~v~~~~~s-~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 262 (337)
T 1gxr_A 206 -TVRSWDLREGRQLQQHDFT-SQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQLH 262 (337)
T ss_dssp -EEEEEETTTTEEEEEEECS-SCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred -cEEEEECCCCceEeeecCC-CceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence 3688999999988876531 111223322 23567888888999999999998876654
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.53 E-value=0.0053 Score=54.92 Aligned_cols=199 Identities=12% Similarity=0.128 Sum_probs=125.1
Q ss_pred cccceeEEeec-cchhhhhhccccceeeecccccEEEEEe---CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeee
Q 020609 94 KRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLN---VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (323)
Q Consensus 94 kRS~V~EIv~a-~diI~aL~~sG~c~af~r~tn~~iC~LN---~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (323)
..+.|..+.+. ++.+++-...|....||..+|+.+..+. ..++..|.+|-++.....|++.| .|. .+ +.
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs---~d~--~i--~i 153 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS---KDI--CI--KV 153 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTS--CE--EE
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe---CCC--eE--EE
Confidence 45667777665 4556666788999999999998765443 36788999999999877776644 222 22 22
Q ss_pred eehhhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc----cceeeEEEc
Q 020609 170 TRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKIS 242 (323)
Q Consensus 170 ~~i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd----e~VqEIkIS 242 (323)
- ++..|+. +..- -.|.+ -+.|...+..+++-...|+..++||+++.+.+..+.. ..+.-+..+
T Consensus 154 w---d~~~~~~-----~~~~--~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 154 W---DLAQQVV-----LSSY--RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp E---ETTTTEE-----EEEE--CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred E---ECCCCcE-----EEEE--cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence 2 3333332 2111 11333 3467666666666667899999999999998877742 235556666
Q ss_pred C--CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEE-EecCCceeEEeccccceeee
Q 020609 243 P--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLV-KQENENLQILDESNSGCLEL 315 (323)
Q Consensus 243 ~--Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLI-KQE~~~LqI~Dl~~~~l~ev 315 (323)
| +-+++.-. ..+ -++|+++.+|+.+..+.. | ...|.=+. .-++++|+ =-++..++|||+.+.++...
T Consensus 224 p~~~~~l~sg~-~dg--~v~~wd~~~~~~~~~~~~--h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 224 PQQSEVFVFGD-ENG--TVSLVDTKSTSCVLSSAV--H-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp SSCTTEEEEEE-TTS--EEEEEESCC--CCEEEEC--C-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred CCCCcceEEec-cCC--cEEEEECCCCcEEEEEcC--C-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 4 33433322 222 268999999999987762 2 33333222 12445554 56899999999999988654
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.49 E-value=0.0025 Score=56.51 Aligned_cols=203 Identities=9% Similarity=0.103 Sum_probs=118.2
Q ss_pred cccccccceeEEeec-cchhhhhhccccceeeecccccEEEEEe---CCCCceEEEEEeecCCCeEEEEEeEecCCCcee
Q 020609 90 PFLRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLN---VTADEVIRSLFYNKNNDSLITVSVYASDNFSSL 165 (323)
Q Consensus 90 pfl~kRS~V~EIv~a-~diI~aL~~sG~c~af~r~tn~~iC~LN---~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~L 165 (323)
....-...|..+.+. ++-+++-...|....||..+++.+.... ..+...|.+|-++.....|++.| .|. .+
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs---~dg--~v 163 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG---KDF--SV 163 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE---TTS--CE
T ss_pred ccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe---CCC--eE
Confidence 334455667777665 3445555667888999998888655332 35677899999999888777644 222 22
Q ss_pred eeeeeehhhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec----ccceee
Q 020609 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQE 238 (323)
Q Consensus 166 kCr~~~i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs----de~VqE 238 (323)
+ .- ++..|+. +..- -.|.+ -+.|...+..+++....|+..++||+++-+.+..+. +..+..
T Consensus 164 ~--iw---d~~~~~~-----~~~~--~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 231 (357)
T 4g56_B 164 K--VW---DLSQKAV-----LKSY--NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTS 231 (357)
T ss_dssp E--EE---ETTTTEE-----EEEE--CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEE
T ss_pred E--EE---ECCCCcE-----EEEE--cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccc
Confidence 2 22 2222221 1110 01222 356766666666667789999999999877655443 334666
Q ss_pred EEEcC--CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEE-EecCCceeEEecccccee
Q 020609 239 IKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLV-KQENENLQILDESNSGCL 313 (323)
Q Consensus 239 IkIS~--Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~--f~EkLLI-KQE~~~LqI~Dl~~~~l~ 313 (323)
+.++| +.+++.-.... -++|+++.+|+.+..+.. +...|--+.- -++++|+ =-++..++|||+.+.++.
T Consensus 232 v~~sp~~~~~la~g~~d~---~i~~wd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 232 VTWHPEKDDTFACGDETG---NVSLVNIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp EEECTTSTTEEEEEESSS---CEEEEESSCGGGCEEECC---CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred hhhhhcccceEEEeeccc---ceeEEECCCCcEeEEEec---cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 77764 44444332222 268899999998887652 2344433321 2445554 568899999999998876
Q ss_pred ee
Q 020609 314 EL 315 (323)
Q Consensus 314 ev 315 (323)
..
T Consensus 306 ~~ 307 (357)
T 4g56_B 306 RD 307 (357)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0013 Score=56.70 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=125.3
Q ss_pred cccceeEEeec---cchhhhhhccccceeeeccccc------EEEEE--eCCCCceEEEEEeecCCCeEEEEEeEecCCC
Q 020609 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQ------RICFL--NVTADEVIRSLFYNKNNDSLITVSVYASDNF 162 (323)
Q Consensus 94 kRS~V~EIv~a---~diI~aL~~sG~c~af~r~tn~------~iC~L--N~s~dEvIrSiFyNk~NdSlItvSvy~sd~f 162 (323)
....|..+-.. ..+++.-...|....||..+++ ....+ -..+..-|.++-++..+..++.+. ..|.
T Consensus 112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg- 188 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA--GSSN- 188 (416)
T ss_dssp SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE--SSSS-
T ss_pred CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE--cCCC-
Confidence 44566666665 3477777788999999999887 33333 124566788999988744444422 2222
Q ss_pred ceeeeeeeehhhhhhCCCCCCCcceeecc-------cCCCCeEEecCCCceEEEEecCCC---eEEEEeccCc-EEEEEe
Q 020609 163 SSLRCRSTRIEYIRRGKPDAGFALFESES-------LKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNY-TMLYSI 231 (323)
Q Consensus 163 S~LkCr~~~i~~i~~Gk~~~g~~LFe~~~-------L~~PgFVEFDdvN~kilty~aq~~---~YrVfdlknY-s~LYsI 231 (323)
.+ +.. +++.++ ++..-.. -...--+.|...++..++....++ ..++||+++. ..+..+
T Consensus 189 -~v--~iw---d~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~ 257 (416)
T 2pm9_A 189 -FA--SIW---DLKAKK-----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL 257 (416)
T ss_dssp -CE--EEE---ETTTTE-----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC
T ss_pred -CE--EEE---ECCCCC-----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe
Confidence 12 222 222222 1111110 122334678877767777677777 9999999986 444444
Q ss_pred c---ccceeeEEEcC--CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEe
Q 020609 232 S---DKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (323)
Q Consensus 232 s---de~VqEIkIS~--Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~D 306 (323)
. ...|..+.++| |-+|+.-... +. ++|+++.+|+.+..+..--..-..+.|-..-...|+.--.+..++|||
T Consensus 258 ~~~~~~~v~~~~~s~~~~~~l~s~~~d-g~--v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 258 NQGHQKGILSLDWCHQDEHLLLSSGRD-NT--VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp CSCCSSCEEEEEECSSCSSCEEEEESS-SE--EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred ecCccCceeEEEeCCCCCCeEEEEeCC-CC--EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence 3 46788899985 5555544433 33 789999999999887631122334455443336777778899999999
Q ss_pred ccccce
Q 020609 307 ESNSGC 312 (323)
Q Consensus 307 l~~~~l 312 (323)
+.+...
T Consensus 335 ~~~~~~ 340 (416)
T 2pm9_A 335 LQNLTN 340 (416)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 988653
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.45 E-value=0.016 Score=47.91 Aligned_cols=191 Identities=12% Similarity=0.115 Sum_probs=119.1
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
...|..+-.. ...+++-...|....||..+++.+..+.. +..-|.++-++...+.|++.+ .|. .++. .
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~---~dg--~i~~--~-- 210 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGG---LDN--TVRS--W-- 210 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--EEEE--E--
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEe---cCC--cEEE--E--
Confidence 3445555544 34677777889999999999998888865 556688999988777776644 222 2222 2
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEcC-CEEEEE
Q 020609 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISP-GIMLLI 249 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS~-Gimll~ 249 (323)
+++.|+ ++.....-..+--+.|.. +|+.++....++..++||+.+-+.. .+ ....+..+.++| |-+|+.
T Consensus 211 -d~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 211 -DLREGR-----QLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp -ETTTTE-----EEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred -ECCCCc-----eEeeecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEE
Confidence 222222 222211111223355654 5667777778999999999987743 33 245688888884 444444
Q ss_pred EecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEecc
Q 020609 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDES 308 (323)
Q Consensus 250 ~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (323)
-.. .+ -++++++++|+.+....+. ..-..+.|- .-+.+|+.--++..+++||+.
T Consensus 283 ~~~-dg--~i~~~~~~~~~~~~~~~~~-~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 TGK-DN--LLNAWRTPYGASIFQSKES-SSVLSCDIS-VDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EET-TS--EEEEEETTTCCEEEEEECS-SCEEEEEEC-TTSCEEEEEETTSCEEEEEEE
T ss_pred ecC-CC--cEEEEECCCCeEEEEecCC-CcEEEEEEC-CCCCEEEEecCCCeEEEEEEe
Confidence 333 33 3688999999988654431 111122322 235677888899999999985
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0075 Score=51.98 Aligned_cols=208 Identities=12% Similarity=0.202 Sum_probs=127.3
Q ss_pred cccceeEEeec--cchhhhhhccccceeeeccc----ccEEEEEeCCCCceEEEEEeecC-CCeEEEEEeEecCCCceee
Q 020609 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRET----NQRICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLR 166 (323)
Q Consensus 94 kRS~V~EIv~a--~diI~aL~~sG~c~af~r~t----n~~iC~LN~s~dEvIrSiFyNk~-NdSlItvSvy~sd~fS~Lk 166 (323)
...+|..+-.. ..++++-...|....||..+ .+.+..+. .+..-|.++-++.. .+-|++.| .|.
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~---~dg----- 136 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGG---NNG----- 136 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEEC---SSS-----
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEc---CCC-----
Confidence 34566666665 33566666789999999987 34566665 45566788888887 44444422 222
Q ss_pred eeeeehhhhhhCCCCC-CCcceee----cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--------
Q 020609 167 CRSTRIEYIRRGKPDA-GFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------- 233 (323)
Q Consensus 167 Cr~~~i~~i~~Gk~~~-g~~LFe~----~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-------- 233 (323)
.+.+=++..++... ....+.. ..-...--+.|...++..++....++..++||+++-+.+..+..
T Consensus 137 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 137 --EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp --CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred --eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence 22233444333100 0011111 11122335778877678888778899999999999999888874
Q ss_pred cceeeEEEcCC--EEEEEEecCCCeeeEEEEEeecC-ceeeeeeeccccCCcc---hhhhhccceeEEEecCCceeEEec
Q 020609 234 KNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKKV---DFIEQFNEKLLVKQENENLQILDE 307 (323)
Q Consensus 234 e~VqEIkIS~G--imll~~q~~~~~iPlkIlsIedG-~~l~~~~~~L~~sk~i---qFiE~f~EkLLIKQE~~~LqI~Dl 307 (323)
..+..+.++|. .+++.-....+.--++++++.++ +++..+.. .+...+ .|-..-+..|+.=-++..+++||+
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS--CCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec--CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 56889999974 34444433332224688999987 45444430 123333 333224566777778999999999
Q ss_pred cccceee
Q 020609 308 SNSGCLE 314 (323)
Q Consensus 308 ~~~~l~e 314 (323)
.+.+...
T Consensus 293 ~~~~~~~ 299 (416)
T 2pm9_A 293 ESAEQLS 299 (416)
T ss_dssp SSCCEEE
T ss_pred CCCccce
Confidence 9877654
No 28
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.39 E-value=0.038 Score=50.07 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=126.9
Q ss_pred ccc-eeEEeecc----chhhhhhccccceeeecccc--------cEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCC
Q 020609 95 RSK-IIEIVAAR----DIVFALAQSGVCAAFCRETN--------QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDN 161 (323)
Q Consensus 95 RS~-V~EIv~a~----diI~aL~~sG~c~af~r~tn--------~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~ 161 (323)
... |..+.... .+++.-...|....||..++ +.+-.+.. +..-|.++-++.....|++.+. ..+.
T Consensus 63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-~~~~ 140 (615)
T 1pgu_A 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGE-GRDN 140 (615)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEEC-CSSC
T ss_pred CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhc-ccccEEEEEEeCCCCEEEEecc-CCCC
Confidence 344 66665544 56666677899999999876 44444543 5667999999998887777541 1111
Q ss_pred CceeeeeeeehhhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--c--
Q 020609 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--K-- 234 (323)
Q Consensus 162 fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e-- 234 (323)
. ...+..+ .|+ ++.. ...|++ -+.|...+...++....++..++||+.+.+++..+.. .
T Consensus 141 ~--~~v~~~d-----~~~-----~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 141 F--GVFISWD-----SGN-----SLGE--VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp S--EEEEETT-----TCC-----EEEE--CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred c--cEEEEEE-----CCC-----ccee--eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence 1 1122111 111 1111 011222 3567766554666667899999999999999998873 2
Q ss_pred -ceeeEEEcCC--EEEEEEecCCCeeeEEEEEeecCceeeeeee-ccccCC---cchhhhhccceeEEEecCCceeEEec
Q 020609 235 -NVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRNK---KVDFIEQFNEKLLVKQENENLQILDE 307 (323)
Q Consensus 235 -~VqEIkIS~G--imll~~q~~~~~iPlkIlsIedG~~l~~~~~-~L~~sk---~iqFiE~f~EkLLIKQE~~~LqI~Dl 307 (323)
.|..+.++|. -.|+.-... + -+.++++.+|+.+..+.. ...+.. .+.|. -+..|+.--.+..+++||+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSD-R--KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETT-C--CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEET
T ss_pred ceEEEEEECCCCCCEEEEEeCC-C--eEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEEC
Confidence 5888999865 444443332 2 368899999999987721 001233 34555 5667778888999999999
Q ss_pred cccceeee
Q 020609 308 SNSGCLEL 315 (323)
Q Consensus 308 ~~~~l~ev 315 (323)
.+.++...
T Consensus 282 ~~~~~~~~ 289 (615)
T 1pgu_A 282 TTSKCVQK 289 (615)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEE
Confidence 98776543
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.39 E-value=0.007 Score=52.56 Aligned_cols=183 Identities=11% Similarity=0.082 Sum_probs=115.2
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
...+++-...|....||..+++.+..+. .+..-|.++-++...+.|++.| .|. .++.- ++..|+.-
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s---~d~----~i~iw---d~~~~~~~--- 174 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSS---QDM----QLKIW---SVKDGSNP--- 174 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEE---TTS----EEEEE---ETTTCCCC---
T ss_pred CCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEe---CCC----eEEEE---eCCCCcCc---
Confidence 3466677788999999999998777664 5667789999998877666543 222 22333 33333321
Q ss_pred cceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-----cceeeEEE---------------
Q 020609 185 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KNVQEIKI--------------- 241 (323)
Q Consensus 185 ~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-----e~VqEIkI--------------- 241 (323)
..|. .|.+. +.|.. +|+.++....|+..++||+++-+.+..+.. ..+..+.+
T Consensus 175 ~~~~----~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 175 RTLI----GHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp EEEE----CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred eEEc----CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 1111 23333 45765 455566667799999999999999888863 22333333
Q ss_pred ------c-CCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEeccccc
Q 020609 242 ------S-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 242 ------S-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
+ +|-+++.-... +. ++|+++.+|+.+..+.. ++... +.|-..-...|+.=-++..+++||+.+.+
T Consensus 250 v~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVS-GV--ITVHNVFSKEQTIQLPS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCTTCSSCTTEEEEEEETT-SC--EEEEETTTCCEEEEECC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred ccceEEcCCCCEEEEEcCC-Ce--EEEEECCCCceeEEccc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 3 34444443332 22 68899999998876642 22333 33322212278888899999999999864
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.37 E-value=0.0089 Score=50.03 Aligned_cols=202 Identities=15% Similarity=0.135 Sum_probs=118.8
Q ss_pred cccceeEEeecc-----chhhhhhccccceeeeccccc-EEEEEeCCCCceEEEEEe------ecCCCeEEEEEeEecCC
Q 020609 94 KRSKIIEIVAAR-----DIVFALAQSGVCAAFCRETNQ-RICFLNVTADEVIRSLFY------NKNNDSLITVSVYASDN 161 (323)
Q Consensus 94 kRS~V~EIv~a~-----diI~aL~~sG~c~af~r~tn~-~iC~LN~s~dEvIrSiFy------Nk~NdSlItvSvy~sd~ 161 (323)
...+|.-+-+.. .++++-...|....||..+++ .+..+. .+...|.++-+ +...+.|++.| .|.
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~ 139 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGS---RDG 139 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEE---TTS
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEe---CCC
Confidence 345666666653 567777788999999999988 666666 45566777744 34455555433 222
Q ss_pred CceeeeeeeehhhhhhCCCCCCCcceeeccc---CCCCeEEec---CCCceEEEEecCCCeEEEEeccCcEEEEEec-cc
Q 020609 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESL---KWPGFVEFD---DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK 234 (323)
Q Consensus 162 fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L---~~PgFVEFD---dvN~kilty~aq~~~YrVfdlknYs~LYsIs-de 234 (323)
.+ +.. +++.++. ....+....- ...--+.|+ ..+++.++....++..++||+++-+++.... ..
T Consensus 140 --~i--~vw---d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 210 (357)
T 3i2n_A 140 --TV--KVW---DPRQKDD--PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKN 210 (357)
T ss_dssp --CE--EEE---CTTSCSS--CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred --eE--EEE---eCCCCCC--cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCC
Confidence 12 222 2332220 0011111000 000112221 2467788888889999999999999766654 46
Q ss_pred ceeeEEEcC----CEEEEEEecCCCeeeEEEEEeecCceeeeeeec--cccCCc---chhhhhccceeEEEecCCceeEE
Q 020609 235 NVQEIKISP----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL--LHRNKK---VDFIEQFNEKLLVKQENENLQIL 305 (323)
Q Consensus 235 ~VqEIkIS~----Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~--L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~ 305 (323)
.+..+.++| |-.++.-.. .+ -++|+++.+++.+..+... -.+... +.|-..-...|+.=-++..+++|
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSL-EG--KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEES-TT--EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECC-CC--eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 788899985 555454432 33 3678999998887765411 122333 33333222367777889999999
Q ss_pred eccccc
Q 020609 306 DESNSG 311 (323)
Q Consensus 306 Dl~~~~ 311 (323)
|+.+..
T Consensus 288 d~~~~~ 293 (357)
T 3i2n_A 288 KYEYPI 293 (357)
T ss_dssp EEECCS
T ss_pred ecCCCc
Confidence 998643
No 31
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.37 E-value=0.0095 Score=52.44 Aligned_cols=185 Identities=14% Similarity=0.210 Sum_probs=110.9
Q ss_pred hccccceeeecccccEE----EEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCC--Cc
Q 020609 112 AQSGVCAAFCRETNQRI----CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG--FA 185 (323)
Q Consensus 112 ~~sG~c~af~r~tn~~i----C~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g--~~ 185 (323)
...|...+|+..+...+ ..+ ..+..-|.++=++..++.++.+. ..|. .++.- ++..|+.... .+
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s~--s~dg--~v~vw-----~~~~~~~~~~~~~~ 123 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIASG--SEDC--TVMVW-----EIPDGGLVLPLREP 123 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEEE--ETTS--EEEEE-----ECCTTCCSSCBCSC
T ss_pred cCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEEE--eCCC--eEEEE-----EccCCCCccccCCc
Confidence 34577788886443221 122 24677889999998444444421 2232 23333 2333322110 11
Q ss_pred ceee-cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe----cccceeeEEEc-CCEEEEEEecCCCeeeE
Q 020609 186 LFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----SDKNVQEIKIS-PGIMLLIFTKASGHVPL 259 (323)
Q Consensus 186 LFe~-~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI----sde~VqEIkIS-~Gimll~~q~~~~~iPl 259 (323)
+..- ..-...-.+.|......+++-...|+..++||+.+-+.+..+ ....|..+.++ +|-+|+.--.. + -+
T Consensus 124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i 200 (402)
T 2aq5_A 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-K--RV 200 (402)
T ss_dssp SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-S--EE
T ss_pred eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-C--cE
Confidence 2111 111233456787766567777778999999999999999999 45678899998 45444443322 2 37
Q ss_pred EEEEeecCceeeeeeeccccC---CcchhhhhccceeEEE---ecCCceeEEeccccc
Q 020609 260 KILSIEDGTVLKSFNHLLHRN---KKVDFIEQFNEKLLVK---QENENLQILDESNSG 311 (323)
Q Consensus 260 kIlsIedG~~l~~~~~~L~~s---k~iqFiE~f~EkLLIK---QE~~~LqI~Dl~~~~ 311 (323)
+|+++.+|+.+..+.. .|.. ..+.|... +..|..= ..+..+++||+.+.+
T Consensus 201 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 201 RVIEPRKGTVVAEKDR-PHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEETTTTEEEEEEEC-SSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEeCCCCceeeeecc-CCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCcccc
Confidence 8999999999988731 2322 33455532 3444444 588999999999865
No 32
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.37 E-value=0.017 Score=50.62 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=124.5
Q ss_pred ceeEEeec--cchhhhh-hccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCc--eeeeeeee
Q 020609 97 KIIEIVAA--RDIVFAL-AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS--SLRCRSTR 171 (323)
Q Consensus 97 ~V~EIv~a--~diI~aL-~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS--~LkCr~~~ 171 (323)
.+..+... ...+++. ...|...+||..+++.+..+... .-+.++-++...+.|++.+.. .+... .=..+..
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~-~~~~~~~dg~i~~~- 288 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDGKELYIAQFS-ASNQESGGGRLGIY- 288 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTSSEEEEEEEE-SCTTCSCCEEEEEE-
T ss_pred CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCCCEEEEEECC-CCccccCCCeEEEE-
Confidence 44444444 2334333 36788899999999988777653 338899998877777665532 21111 0012222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEE
Q 020609 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLI 249 (323)
Q Consensus 172 i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~ 249 (323)
++..|+. +-....-..|--+.|+.....+++-...++..++||+.+.+.+..+. ...+..+.++| |-.|++
T Consensus 289 --d~~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 289 --SMDKEKL-----IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp --ETTTTEE-----EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEE
T ss_pred --ECCCCcE-----EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEE
Confidence 2222221 11111122566678877666777777889999999999998877775 35678888884 545555
Q ss_pred EecCCCee------------eEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEeccc
Q 020609 250 FTKASGHV------------PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDESN 309 (323)
Q Consensus 250 ~q~~~~~i------------PlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~ 309 (323)
.....+.+ -+.++++.+|+.+..+..- ..-..+.|- .-+.+|++-- .+..+.+||+.+
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVS-PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSCEEEEEETTTTEEEEEEETT
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEc-CCCCEEEEEECCCCeEEEEEecC
Confidence 55555555 7899999999998877631 111223332 2255677664 589999999864
No 33
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.36 E-value=0.0084 Score=52.78 Aligned_cols=201 Identities=15% Similarity=0.217 Sum_probs=122.8
Q ss_pred cccceeEEeecc---chhhhhhccccceeeecccccEEEEEe-CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeee
Q 020609 94 KRSKIIEIVAAR---DIVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (323)
Q Consensus 94 kRS~V~EIv~a~---diI~aL~~sG~c~af~r~tn~~iC~LN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (323)
...+|..+-... .+++.-...|....||..+++.+..+. ..+...|.++=++...+.|++.| .|. ..+.
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~----~i~i 202 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC---RDK----RVRV 202 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE---TTS----EEEE
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe---cCC----cEEE
Confidence 345666666553 366777788999999999999998886 56777899999999777666644 232 2222
Q ss_pred eehhhhhhCCCCCCCcceee---cccCCCCeEEecCCCceEEEEe---cCCCeEEEEeccCcEE---EEEec-ccceeeE
Q 020609 170 TRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYS---AQDSIYKVFDLKNYTM---LYSIS-DKNVQEI 239 (323)
Q Consensus 170 ~~i~~i~~Gk~~~g~~LFe~---~~L~~PgFVEFDdvN~kilty~---aq~~~YrVfdlknYs~---LYsIs-de~VqEI 239 (323)
. +++.|+. +.+- ..-..+--+.|.. +|++++.. ..++..++||+++.+. ++.+. ...+..+
T Consensus 203 w---d~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 273 (402)
T 2aq5_A 203 I---EPRKGTV-----VAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP 273 (402)
T ss_dssp E---ETTTTEE-----EEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred E---eCCCCce-----eeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence 2 3332321 1111 1111244566774 57888776 6899999999998764 44442 3457777
Q ss_pred EEcC-CEEEEEEecCCCeeeEEEEEeecCce-eeeeeecc--ccCCcchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 240 KISP-GIMLLIFTKASGHVPLKILSIEDGTV-LKSFNHLL--HRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 240 kIS~-Gimll~~q~~~~~iPlkIlsIedG~~-l~~~~~~L--~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
.++| |-+|++.-...+ -++|+++.+++. +..+...- ..-..+.|.. ...+++ -.++.+++||+.+.++..+
T Consensus 274 ~~s~~~~~l~~~g~~dg--~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp--~~~~~~-s~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDS--SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP--KRGLEV-NKCEIARFYKLHERKCEPI 348 (402)
T ss_dssp EEETTTTEEEEEETTCS--CEEEEEECSSTTCEEEEEEECCSSCCSEEEECC--GGGSCG-GGTEEEEEEEEETTEEEEE
T ss_pred EEcCCCCEEEEEEcCCC--eEEEEEecCCCcceEeecccccCCcccceEEec--ccccce-ecceeEEEEEcCCCcEEEE
Confidence 7774 344433333333 367899999985 44443211 1122333332 122223 3677999999999887655
No 34
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.35 E-value=0.019 Score=51.38 Aligned_cols=190 Identities=13% Similarity=0.175 Sum_probs=115.4
Q ss_pred eeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhh
Q 020609 98 IIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (323)
Q Consensus 98 V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~ 177 (323)
|.-+-.-.+.+++-...|...+||..+++.+..+.. +..-|.++-+ ..+.|++.| .|. .++.- ++..
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~sg~---~dg--~i~vw-----d~~~ 202 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGS---SDS--TVRVW-----DVNT 202 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEE---TTS--CEEEE-----ESSS
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEE--CCCEEEEEc---CCC--eEEEE-----ECCC
Confidence 444444466777778899999999999998888875 4455677766 233333322 232 22222 2222
Q ss_pred CCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEE-----EEecccceeeEEEcCCEEEEEEec
Q 020609 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-----YSISDKNVQEIKISPGIMLLIFTK 252 (323)
Q Consensus 178 Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~L-----YsIsde~VqEIkIS~Gimll~~q~ 252 (323)
|+. +.. .-.|.+-|.-=..++..++....++..++||+.+-+.+ +.-....|..+...+..++ .-..
T Consensus 203 ~~~-----~~~--~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-s~~~ 274 (435)
T 1p22_A 203 GEM-----LNT--LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV-SASG 274 (435)
T ss_dssp CCE-----EEE--ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE-EEET
T ss_pred CcE-----EEE--EcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE-EEeC
Confidence 221 111 01233322222223445666678999999999876633 2223456777777555543 3222
Q ss_pred CCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 253 ~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
.+. ++++++.+|+.+..+.. +...+.-+..-+..|+.=-.+..+++||+.+.++..
T Consensus 275 -dg~--i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 275 -DRT--IKVWNTSTCEFVRTLNG---HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 330 (435)
T ss_dssp -TSE--EEEEETTTCCEEEEEEC---CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred -CCe--EEEEECCcCcEEEEEcC---CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 232 58999999999988762 244444444456778888899999999999877654
No 35
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.35 E-value=0.041 Score=48.69 Aligned_cols=186 Identities=10% Similarity=0.097 Sum_probs=118.4
Q ss_pred chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCc
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~ 185 (323)
+.+++.+..|....||..+++....+...+...|.++-++...+.|++.+ .|. .++. . ++..|+ .
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~---~dg--~i~i--w---d~~~~~-----~ 168 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL---GNG--LVDI--Y---DVESQT-----K 168 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE---TTS--CEEE--E---ETTTCC-----E
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC---CCC--eEEE--E---ECcCCe-----E
Confidence 44566678899999999999999999988889999999999666655533 222 2222 2 222222 1
Q ss_pred ceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccC-cEEEEEe--cccceeeEEEcC-CEEEEEEecCCCeee
Q 020609 186 LFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVP 258 (323)
Q Consensus 186 LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlkn-Ys~LYsI--sde~VqEIkIS~-Gimll~~q~~~~~iP 258 (323)
+.+-. .|.+ -+.| ++..++....++..++||++. -..+..+ ....|..+.++| |-+++.-... + -
T Consensus 169 ~~~~~--~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~--~ 240 (401)
T 4aez_A 169 LRTMA--GHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND-N--V 240 (401)
T ss_dssp EEEEC--CCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-S--C
T ss_pred EEEec--CCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC-C--e
Confidence 11110 2222 2344 467888888999999999984 3333333 456788888884 4444443332 2 3
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhhhccceeEEE---ecCCceeEEeccccceeee
Q 020609 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK---QENENLQILDESNSGCLEL 315 (323)
Q Consensus 259 lkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIK---QE~~~LqI~Dl~~~~l~ev 315 (323)
++|+++.+++.+..+...-..-..+.|- ..+.++++- ..+..+++||+.+.++...
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFWNAATGARVNT 299 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEEC-TTSTTEEEEECCTTTCEEEEEETTTCCEEEE
T ss_pred EEEccCCCCCccEEecCCcceEEEEEEC-CCCCCEEEEecCCCCCEEEEEECCCCCEEEE
Confidence 6899999999888765211222233332 235567773 3689999999998876543
No 36
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.34 E-value=0.023 Score=54.09 Aligned_cols=196 Identities=14% Similarity=0.168 Sum_probs=129.4
Q ss_pred cceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 96 S~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
.+|.-+... ...+++-...|....||..+++.+..+.. +...|+++-++..+..|++.| ++ ..++.-
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~----~d-g~i~vw----- 124 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS----DD-LTVKLW----- 124 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE----TT-SEEEEE-----
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEEEc----CC-CEEEEE-----
Confidence 344444443 34566667789999999999999998865 456689999999888777644 22 223322
Q ss_pred hhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc---cceeeEEEcC---C
Q 020609 174 YIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKISP---G 244 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd---e~VqEIkIS~---G 244 (323)
++..+. .+ ....-.+++ -+.|...++..++....++..++||+.+-...+.+.. ..+.-+..+| |
T Consensus 125 ~~~~~~-----~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (814)
T 3mkq_A 125 NWENNW-----AL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198 (814)
T ss_dssp EGGGTS-----EE-EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC
T ss_pred ECCCCc-----eE-EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC
Confidence 222221 01 111112333 4678777788888888999999999998887777654 5577777774 5
Q ss_pred EEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEeccccceee
Q 020609 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 245 imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
-.++.-.... -+.++++.+|+.+..+.. +...+..+.-. +..|+.--++..+++||+.+.++..
T Consensus 199 ~~l~~~~~dg---~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 199 PYMITASDDL---TIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp CEEEEECTTS---EEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CEEEEEeCCC---EEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 5544443332 478899999998877652 23444433322 3467888889999999999866554
No 37
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.34 E-value=0.013 Score=52.85 Aligned_cols=199 Identities=11% Similarity=0.158 Sum_probs=119.8
Q ss_pred cccceeEEeecc--chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeee
Q 020609 94 KRSKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 94 kRS~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (323)
-+.+|.-+.+.. .+++.-...|....||..|++.+..+.. +..-|.++=++...+-|++.| .|. .++.-+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs---~D~----~i~iwd 178 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS---ADM----TIKLWD 178 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE---TTS----CCCEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEe---CCC----eEEEEe
Confidence 456777777663 4666667789999999999998888875 455678998888777665543 222 222222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CE
Q 020609 172 IEYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GI 245 (323)
Q Consensus 172 i~~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gi 245 (323)
+ ..++. +-+ .-.|.+. +.|... |..++-...|+..++||+.+-.++..+. ...|..+..++ |.
T Consensus 179 ~---~~~~~-----~~~--~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 179 F---QGFEC-----IRT--MHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp T---TSSCE-----EEC--CCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred C---CCCce-----eEE--EcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 2 21111 100 0112222 456554 4445555679999999999988776664 34566677764 44
Q ss_pred EEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhh-------------------ccceeEEEecCCceeEEe
Q 020609 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-------------------FNEKLLVKQENENLQILD 306 (323)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~-------------------f~EkLLIKQE~~~LqI~D 306 (323)
+++.-. ..+ -++|.++.+++....+..--+.-.-+.|-.. -+..|+.=-.+..+++||
T Consensus 248 ~l~s~s-~D~--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 248 LIASCS-NDQ--TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp EEEEEE-TTS--CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred EEEEEc-CCC--eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 433332 222 2688899999887765310000011111110 144677777899999999
Q ss_pred ccccceee
Q 020609 307 ESNSGCLE 314 (323)
Q Consensus 307 l~~~~l~e 314 (323)
+.+.++..
T Consensus 325 ~~~~~~~~ 332 (410)
T 1vyh_C 325 VSTGMCLM 332 (410)
T ss_dssp TTTTEEEE
T ss_pred CCCCceEE
Confidence 99877654
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.34 E-value=0.057 Score=46.93 Aligned_cols=197 Identities=15% Similarity=0.285 Sum_probs=121.2
Q ss_pred cceeEEeeccc--hhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 96 SKIIEIVAARD--IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 96 S~V~EIv~a~d--iI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
.+|..+-...| +++.-...|....||..+++.+..+.. +...|.++-++.....|++.| .|. . ++.-++
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~---~d~--~--v~iw~~- 126 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG---LDN--I--CSIYNL- 126 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEE---TTC--E--EEEEET-
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEe---CCC--e--EEEEEC-
Confidence 45555555433 666677789999999999998887765 455678888888776665543 222 2 222222
Q ss_pred hhhhCCCCCCCcceeecccCCCCeE---EecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEE
Q 020609 174 YIRRGKPDAGFALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~~~L~~PgFV---EFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll 248 (323)
..++ +..-.....-.|.+.| .|.+ ++++++ ...|+..++||+++-+.+..+. ...|..+.++|.--++
T Consensus 127 --~~~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s-~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 127 --KTRE---GNVRVSRELAGHTGYLSCCRFLD-DNQIVT-SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp --TTCS---BSCEEEEEEECCSSCEEEEEEEE-TTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred --ccCC---CcceeEEEecCCCccEEEEEECC-CCcEEE-EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 1111 1111112222345544 3443 345555 4678999999999999888875 3567888887543222
Q ss_pred EEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEecccccee
Q 020609 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+.-...+ -++|.++.+|+.+..+.. | ...|.-+. .-+.+|+.=-.+..+++||+.+.+..
T Consensus 200 ~sg~~d~--~v~~wd~~~~~~~~~~~~--h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 200 VSGACDA--SAKLWDVREGMCRQTFTG--H-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp EEEETTS--CEEEEETTTCSEEEEECC--C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEeCCC--cEEEEECCCCeeEEEEcC--C-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 2222233 368899999998887652 2 33332222 13567777889999999999986643
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.33 E-value=0.016 Score=48.88 Aligned_cols=196 Identities=8% Similarity=0.057 Sum_probs=119.5
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEe-CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeee
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (323)
...|..+-.. .++++.-...|....||..+++..+.+. .....-|.++-++.....|++.+ .|. .++...+
T Consensus 52 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~--~v~i~d~- 125 (372)
T 1k8k_C 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSR--VISICYF- 125 (372)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTS--SEEEEEE-
T ss_pred CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe---CCC--EEEEEEe-
Confidence 3455555554 4466666778999999999998777554 46677899999998777666644 222 2322222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEecc------------------CcEEEEE
Q 020609 172 IEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLK------------------NYTMLYS 230 (323)
Q Consensus 172 i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlk------------------nYs~LYs 230 (323)
..++. ..+.......+.+ -+.|.. +++.++....++..++||++ .-.++..
T Consensus 126 ----~~~~~---~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
T 1k8k_C 126 ----EQEND---WWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 197 (372)
T ss_dssp ----ETTTT---EEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred ----cCCCc---ceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe
Confidence 11110 0011111112222 345665 56666667789999999953 5567777
Q ss_pred ec--ccceeeEEEcCC-EEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEec
Q 020609 231 IS--DKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDE 307 (323)
Q Consensus 231 Is--de~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl 307 (323)
+. ...+..+.++|. -+|+.-. ..+. ++++++.+|+.+..+...-..-..+.|-. ...+|+=-.+..+.+||+
T Consensus 198 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 198 SSSSCGWVHGVCFSANGSRVAWVS-HDST--VCLADADKKMAVATLASETLPLLAVTFIT--ESSLVAAGHDCFPVLFTY 272 (372)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEE-TTTE--EEEEEGGGTTEEEEEECSSCCEEEEEEEE--TTEEEEEETTSSCEEEEE
T ss_pred cCCCCCeEEEEEECCCCCEEEEEe-CCCE--EEEEECCCCceeEEEccCCCCeEEEEEec--CCCEEEEEeCCeEEEEEc
Confidence 75 446888888754 3433333 2333 78999999999988763111112233331 234555559999999999
Q ss_pred cc
Q 020609 308 SN 309 (323)
Q Consensus 308 ~~ 309 (323)
.+
T Consensus 273 ~~ 274 (372)
T 1k8k_C 273 DS 274 (372)
T ss_dssp ET
T ss_pred cC
Confidence 88
No 40
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.33 E-value=0.03 Score=47.85 Aligned_cols=200 Identities=14% Similarity=0.152 Sum_probs=115.7
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
...|..+-.. ..+++.-..-|....||..++..+...-..+...|.++=++..+..++. +-..|. .++ .-
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~--sgs~D~--~v~--iw-- 168 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA--SGCLDR--TVK--VW-- 168 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE--EEETTS--EEE--EE--
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE--EEeCCC--eEE--EE--
Confidence 3445555544 3466666777899999998886554444567778899999886555443 112232 222 22
Q ss_pred hhhhhCCCCCCCcceee--cccCCCCeEEecC-CCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcCCEEE
Q 020609 173 EYIRRGKPDAGFALFES--ESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIML 247 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~--~~L~~PgFVEFDd-vN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~Giml 247 (323)
+++.++ +.+.- ..-..-.++.|.. .++..++-...|+..++||+++-+++..+.. ..|..+.++|.--+
T Consensus 169 -d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 169 -SLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp -ETTCSS-----CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred -ECCCCC-----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 233222 22221 1111123455654 3566777778899999999999999988863 46677777765332
Q ss_pred EEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEecccc
Q 020609 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
++--...+. ++|.++.+|+.++.+..-.....-+.|--.-+..++.==-+..+.+|++.+.
T Consensus 243 l~s~s~Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 243 IISGSEDGT--LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp EEEEETTSC--EEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred EEEEcCCCe--EEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 333333333 6899999999998876311111112221111222344455666778887653
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.31 E-value=0.034 Score=48.34 Aligned_cols=175 Identities=16% Similarity=0.158 Sum_probs=109.0
Q ss_pred hhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcc
Q 020609 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~L 186 (323)
.++.-...|....||..+++.+..+.. +..-|.++-++....-+++.| .|. .+ +.- +++.|+. +
T Consensus 156 ~l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~---~d~--~v--~~w---d~~~~~~-----~ 219 (340)
T 1got_B 156 QIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGA---CDA--SA--KLW---DVREGMC-----R 219 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--CE--EEE---ETTTCSE-----E
T ss_pred cEEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCCEEEEEe---CCC--cE--EEE---ECCCCee-----E
Confidence 355556678899999999998888764 445678898888666555433 232 12 222 3333321 1
Q ss_pred eeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc----eeeEEEcC-CEEEEEEecCCCeee
Q 020609 187 FESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN----VQEIKISP-GIMLLIFTKASGHVP 258 (323)
Q Consensus 187 Fe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~----VqEIkIS~-Gimll~~q~~~~~iP 258 (323)
.. --.|++ -+.|.. +|+.++-...|+..++||+++-..+..+..++ |..+.++| |-+|+.-- ..+ -
T Consensus 220 ~~--~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~--~ 293 (340)
T 1got_B 220 QT--FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDF--N 293 (340)
T ss_dssp EE--ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTS--E
T ss_pred EE--EcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCC--e
Confidence 11 011222 345665 56677777889999999999999888876553 67777774 44433332 233 3
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEe
Q 020609 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILD 306 (323)
Q Consensus 259 lkIlsIedG~~l~~~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~D 306 (323)
++|.++.+++.+..+. .+..+|.-+.- -+..|.-=-.+..++|||
T Consensus 294 i~vwd~~~~~~~~~~~---~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 294 CNVWDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcccCcEeeEee---cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 6889999999887665 22344332221 234566666888999997
No 42
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.30 E-value=0.024 Score=51.04 Aligned_cols=193 Identities=16% Similarity=0.232 Sum_probs=122.3
Q ss_pred cceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 96 S~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
..|..+-+. ..+++.-...|....||..+++.+..+. .++.-|.++-++...+.|++.| .|. .++ .-
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s---~D~--~i~--~w--- 219 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSAS---RDK--TIK--MW--- 219 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEE---TTS--EEE--EE---
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEe---CCC--eEE--EE---
Confidence 456666554 3456666677899999999988776665 4556789999998887776644 222 222 22
Q ss_pred hhhhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-----
Q 020609 174 YIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP----- 243 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~----- 243 (323)
+++.|+. +.+- -.|.+. +.|.. +|+.++-...|+..++||+.+-+++..+.. ..|.-+.++|
T Consensus 220 d~~~~~~-----~~~~--~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 220 EVQTGYC-----VKTF--TGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp ETTTCCE-----EEEE--ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred ECCCCcE-----EEEE--eCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccccc
Confidence 3333321 1110 112222 34443 567777778899999999999888877742 3466666766
Q ss_pred ----------------CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeE
Q 020609 244 ----------------GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQI 304 (323)
Q Consensus 244 ----------------Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI 304 (323)
|-+|+.--.. + -++|+++.+|+++..+.- | ... +.|- .-+.+|+.==++..+++
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D-~--~i~iwd~~~~~~~~~~~~--h-~~~v~~v~~~-~~g~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRD-K--TIKMWDVSTGMCLMTLVG--H-DNWVRGVLFH-SGGKFILSCADDKTLRV 364 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETT-S--EEEEEETTTTEEEEEEEC--C-SSCEEEEEEC-SSSSCEEEEETTTEEEE
T ss_pred chhhhccccccccCCCCCEEEEEeCC-C--eEEEEECCCCceEEEEEC--C-CCcEEEEEEc-CCCCEEEEEeCCCeEEE
Confidence 3444433322 2 278999999999887752 2 333 2321 23556777778999999
Q ss_pred Eeccccceee
Q 020609 305 LDESNSGCLE 314 (323)
Q Consensus 305 ~Dl~~~~l~e 314 (323)
||+.+.++..
T Consensus 365 wd~~~~~~~~ 374 (410)
T 1vyh_C 365 WDYKNKRCMK 374 (410)
T ss_dssp ECCTTSCCCE
T ss_pred EECCCCceEE
Confidence 9998877654
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.29 E-value=0.012 Score=53.47 Aligned_cols=160 Identities=13% Similarity=0.163 Sum_probs=101.1
Q ss_pred ccceeEEeeccc---hhhhhhccccceeeecccccEEEEEeCCCCc--eEEEEEeecC-CCeEEEEEeEecCCCceeeee
Q 020609 95 RSKIIEIVAARD---IVFALAQSGVCAAFCRETNQRICFLNVTADE--VIRSLFYNKN-NDSLITVSVYASDNFSSLRCR 168 (323)
Q Consensus 95 RS~V~EIv~a~d---iI~aL~~sG~c~af~r~tn~~iC~LN~s~dE--vIrSiFyNk~-NdSlItvSvy~sd~fS~LkCr 168 (323)
...|..+-+..+ .++.-...|....||..+++.+..+....+. -|.++-++.. .+.|++.+ .|. .++.
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg--~i~v- 233 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---SDR--KISC- 233 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE---TTC--CEEE-
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe---CCC--eEEE-
Confidence 344555555543 6777777899999999999988888754331 7899999998 55565543 222 2222
Q ss_pred eeehhhhhhCCCCCCCcceeeccc--CCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc------cee
Q 020609 169 STRIEYIRRGKPDAGFALFESESL--KWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------NVQ 237 (323)
Q Consensus 169 ~~~i~~i~~Gk~~~g~~LFe~~~L--~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde------~Vq 237 (323)
. +++.|+. +..-... .+.+ -+.|. +++.++....++..++||+.+.+++..+... .+.
T Consensus 234 -w---d~~~~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 234 -F---DGKSGEF-----LKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp -E---ETTTCCE-----EEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred -E---ECCCCCE-----eEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 2 2333331 1111000 3333 45777 7777777788999999999999988887753 344
Q ss_pred eEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeee
Q 020609 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 238 EIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
.+..++|-.++.-.... -+.++++.+|+.+..+.
T Consensus 303 ~~~~~~~~~l~~~~~~g---~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 303 GVVATGNGRIISLSLDG---TLNFYELGHDEVLKTIS 336 (615)
T ss_dssp EEEEEETTEEEEEETTS---CEEEEETTEEEEEEEEC
T ss_pred EEEeCCCCeEEEEECCC---CEEEEECCCCcEEEEEe
Confidence 45554555544444333 25778888888877664
No 44
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.28 E-value=0.018 Score=50.24 Aligned_cols=184 Identities=16% Similarity=0.286 Sum_probs=117.0
Q ss_pred hhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcc
Q 020609 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~L 186 (323)
+++.-...|....||..+++.+..+...+.. +.++-++.....|++.+ .+ ..+ +.. ++..|+ +.
T Consensus 94 ~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~g~----~d-g~v--~i~---~~~~~~-----~~ 157 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVD-AWTLAFSPDSQYLATGT----HV-GKV--NIF---GVESGK-----KE 157 (321)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCTTC-CCCEEECTTSSEEEEEC----TT-SEE--EEE---ETTTCS-----EE
T ss_pred EEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-EEEEEECCCCCEEEEEc----CC-CcE--EEE---EcCCCc-----ee
Confidence 4444455688899999999998888776655 45677777776665532 22 122 222 222222 22
Q ss_pred eeecc-cCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEEecCCCeeeEEEE
Q 020609 187 FESES-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKIL 262 (323)
Q Consensus 187 Fe~~~-L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPlkIl 262 (323)
+.-.. -.+.--+.|.. +|+.++....|+..++||+++-+++..+.. ..|..+.++| |-+|+.- ...+. ++|.
T Consensus 158 ~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~--i~iw 233 (321)
T 3ow8_A 158 YSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGY--IKIY 233 (321)
T ss_dssp EEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSC--EEEE
T ss_pred EEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCe--EEEE
Confidence 22110 01111245554 677777788899999999999999988874 4588889985 4444433 23333 7899
Q ss_pred EeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEeccccceee
Q 020609 263 SIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 263 sIedG~~l~~~~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
++++++.+..+.- | ... +.|-. -+..|+.=-.+..++|||+.+.++..
T Consensus 234 d~~~~~~~~~~~~--h-~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 234 DVQHANLAGTLSG--H-ASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp ETTTCCEEEEECC--C-SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ECCCcceeEEEcC--C-CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 9999998876641 2 222 33322 25567777799999999999887654
No 45
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.013 Score=50.69 Aligned_cols=182 Identities=10% Similarity=0.179 Sum_probs=108.1
Q ss_pred hhhhccccceeeecccccEEEEEeCCCCceEEEEEeec--CCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcc
Q 020609 109 FALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK--NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (323)
Q Consensus 109 ~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk--~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~L 186 (323)
.+-...+...+|+..+++.+..+...+.+-|.++-++. .++.+++.| .|. .++.. +++.|+. ...
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~dg--~i~~w-----d~~~~~~---~~~ 164 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD---NRG--TIGFQ-----SYEDDSQ---YIV 164 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE---TTC--CEEEE-----ESSSSCE---EEE
T ss_pred EEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe---CCC--cEEEE-----ECCCCcE---EEE
Confidence 33334444455677788877777766677788998888 666666544 222 22222 3333332 011
Q ss_pred eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEE-EEec---ccceeeEEEcC-CEEEEEEecCCCeeeEEE
Q 020609 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS---DKNVQEIKISP-GIMLLIFTKASGHVPLKI 261 (323)
Q Consensus 187 Fe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~L-YsIs---de~VqEIkIS~-Gimll~~q~~~~~iPlkI 261 (323)
+....-...--+.|.. +|+.++.-..|+..++||+++-+.+ ..+. ...|..+.++| |..|+.-- .+ -++|
T Consensus 165 ~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~--~v~i 239 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQ--TVVC 239 (343)
T ss_dssp ECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SS--BEEE
T ss_pred EecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CC--eEEE
Confidence 1111111122356765 6788887789999999999999876 5554 47789999985 44444443 33 6899
Q ss_pred EEeecCceeeeeeec----cccC-CcchhhhhccceeEEEec-CCceeEEeccc
Q 020609 262 LSIEDGTVLKSFNHL----LHRN-KKVDFIEQFNEKLLVKQE-NENLQILDESN 309 (323)
Q Consensus 262 lsIedG~~l~~~~~~----L~~s-k~iqFiE~f~EkLLIKQE-~~~LqI~Dl~~ 309 (323)
.++.+++.+..+..+ ++-. .-+.| -.-+.+|+.=-. +..++|||+..
T Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EETTSSTTCBSSCCCBC-----CCEEEEE-CTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEcCCCCcceeecccccccccccceEEEE-CCCCCEEEEecCCCCcEEEEEEcc
Confidence 999999887655421 1111 01332 233556665444 88899999843
No 46
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.24 E-value=0.083 Score=45.67 Aligned_cols=188 Identities=12% Similarity=0.195 Sum_probs=116.3
Q ss_pred chhhhhhccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
.+++.-...|....||..+++..+.+.. .+..-|.++=++..+..++.++ ..|. .++. .++ . ++. .
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~d~--~i~i--wd~---~-~~~---~ 153 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS--SIRG--ATTL--RDF---S-GSV---I 153 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE--ETTT--EEEE--EET---T-SCE---E
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE--eCCC--EEEE--EEC---C-CCc---e
Confidence 3566667789999999999999998875 6788899999988554555422 2332 2222 222 2 110 0
Q ss_pred cceeec--ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCE--EEEEEecCCCeee
Q 020609 185 ALFESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGI--MLLIFTKASGHVP 258 (323)
Q Consensus 185 ~LFe~~--~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gi--mll~~q~~~~~iP 258 (323)
..+... .-.+.--+.|.. +++.++....++..++||++ -+.+..+. ...|..+.++|.- +++.-. ..+ -
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~--~ 228 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSS-VDA--T 228 (383)
T ss_dssp EEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEE-TTS--E
T ss_pred EEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEe-CCC--E
Confidence 111110 011223456654 56677777889999999994 55666654 4678888888653 333322 223 3
Q ss_pred EEEEEeec----CceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccce
Q 020609 259 LKILSIED----GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 259 lkIlsIed----G~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
++|+++.+ ++.+..+.+. ..-..+.|-..-+..|+.--.+..+++||+.+.+.
T Consensus 229 i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 229 VKLWDLRNIKDKNSYIAEMPHE-KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEEEGGGCCSTTCEEEEEECS-SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEEEeCCCCCcccceEEEecCC-CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 68999998 6666655421 11122333332456788888899999999998765
No 47
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.24 E-value=0.01 Score=50.48 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=118.2
Q ss_pred ccceeEEeecc---chhhhhhccccceeeecccccEEEEEe------------CCCCceEEEEEeecCCCeEEEEEeEec
Q 020609 95 RSKIIEIVAAR---DIVFALAQSGVCAAFCRETNQRICFLN------------VTADEVIRSLFYNKNNDSLITVSVYAS 159 (323)
Q Consensus 95 RS~V~EIv~a~---diI~aL~~sG~c~af~r~tn~~iC~LN------------~s~dEvIrSiFyNk~NdSlItvSvy~s 159 (323)
..+|..+.... .+++.-...|....||..+++....+. ..+..-|.++-++..+..++.++ ..
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~ 120 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS--SF 120 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE--ET
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE--eC
Confidence 45566665543 667777788999999999887666554 24777889998888555444422 22
Q ss_pred CCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCeEEecC--CCceEEEEecCCCeEEEEeccCcEEEEEec--ccc
Q 020609 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKN 235 (323)
Q Consensus 160 d~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDd--vN~kilty~aq~~~YrVfdlknYs~LYsIs--de~ 235 (323)
|. .++.- ++..|+ ++..-..-....-+.|.. .++..++....++..++||+++-+.+..+. ...
T Consensus 121 d~--~i~iw-----d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 188 (408)
T 4a11_B 121 DK--TLKVW-----DTNTLQ-----TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE 188 (408)
T ss_dssp TS--EEEEE-----ETTTTE-----EEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC
T ss_pred CC--eEEEe-----eCCCCc-----cceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc
Confidence 22 23332 222222 111111111112233433 356688888899999999999988777775 456
Q ss_pred eeeEEEcCCE--EEEEEecCCCeeeEEEEEeecCc-eeeeeee------------ccccCCcchhhhh--ccceeEEEec
Q 020609 236 VQEIKISPGI--MLLIFTKASGHVPLKILSIEDGT-VLKSFNH------------LLHRNKKVDFIEQ--FNEKLLVKQE 298 (323)
Q Consensus 236 VqEIkIS~Gi--mll~~q~~~~~iPlkIlsIedG~-~l~~~~~------------~L~~sk~iqFiE~--f~EkLLIKQE 298 (323)
|..+.++|.- +++.-... + -++++++.+++ .+..+.. ...+...+.-+.- -+.+|+.--.
T Consensus 189 v~~~~~~~~~~~ll~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASAD-S--RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp EEEEEECSSCTTEEEEEETT-S--CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCCcEEEEEcCC-C--cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 8888888653 33333222 2 26788887776 2222210 0011222221211 2456777778
Q ss_pred CCceeEEecccccee
Q 020609 299 NENLQILDESNSGCL 313 (323)
Q Consensus 299 ~~~LqI~Dl~~~~l~ 313 (323)
+..+++||+.+.+..
T Consensus 266 dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 266 DNRMRLWNSSNGENT 280 (408)
T ss_dssp TSCEEEEETTTCCBC
T ss_pred CCeEEEEECCCCccc
Confidence 999999999987654
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.026 Score=48.12 Aligned_cols=195 Identities=13% Similarity=0.146 Sum_probs=116.7
Q ss_pred cceeEEeeccc---hhhhhhccccceeeec----cccc------EEEEEeCC---------CCceEEEEEeecCCCeEEE
Q 020609 96 SKIIEIVAARD---IVFALAQSGVCAAFCR----ETNQ------RICFLNVT---------ADEVIRSLFYNKNNDSLIT 153 (323)
Q Consensus 96 S~V~EIv~a~d---iI~aL~~sG~c~af~r----~tn~------~iC~LN~s---------~dEvIrSiFyNk~NdSlIt 153 (323)
.+|.-+....| +++.-...|....|+. .+++ ..+.+... +..-|.++-++...+-|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 44555555433 6777777899999999 8888 56666542 4558999999987766665
Q ss_pred EEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q 020609 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (323)
Q Consensus 154 vSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYs 230 (323)
.+ .|. .++... ..|+. +..- -.|++ -+.|.. +++.++....++..++||+.+-+.+..
T Consensus 126 ~~---~dg--~i~i~~------~~~~~-----~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 126 GV---ENG--ELRLWN------KTGAL-----LNVL--NFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EE---TTS--CEEEEE------TTSCE-----EEEE--CCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred Ee---CCC--eEEEEe------CCCCe-----eeec--cCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 33 222 233221 12221 1110 01222 356665 455555566789999999999998877
Q ss_pred ecccc-----------------eeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccc
Q 020609 231 ISDKN-----------------VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNE 291 (323)
Q Consensus 231 Isde~-----------------VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~E 291 (323)
+.... +..+..+++-.++...... -+.++++.+++.+..+.. +..++.-+. .-+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~i~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG---AIFVYQITEKTPTGKLIG---HHGPISVLEFNDTNK 260 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGG---CEEEEETTCSSCSEEECC---CSSCEEEEEEETTTT
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC---eEEEEEcCCCceeeeecc---CCCceEEEEECCCCC
Confidence 76543 6666766555444433322 367899999988776641 233332222 1355
Q ss_pred eeEEEecCCceeEEeccccceeee
Q 020609 292 KLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 292 kLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
+|+.--.+..+++||+.+.++...
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~~~~~ 284 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGNSQNC 284 (425)
T ss_dssp EEEEEETTSCEEEECSSSBSCSEE
T ss_pred EEEEEcCCCEEEEEECCCCccceE
Confidence 788888899999999998765443
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.086 Score=44.28 Aligned_cols=201 Identities=9% Similarity=0.102 Sum_probs=117.7
Q ss_pred cccceeEEeec----cchhhhhhccccceeeecccccEEEEEe-CCCCceEEEEEeecC--CCeEEEEEeEecCCCceee
Q 020609 94 KRSKIIEIVAA----RDIVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLR 166 (323)
Q Consensus 94 kRS~V~EIv~a----~diI~aL~~sG~c~af~r~tn~~iC~LN-~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~Lk 166 (323)
....|..+... ..+++.-...|....||..+++..+... ..+..-|.++-++.. .+.+++.+ .|. .++
T Consensus 54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~--~i~ 128 (379)
T 3jrp_A 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDG--KVS 128 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTS--EEE
T ss_pred CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec---CCC--cEE
Confidence 34567777665 4577777788999999999998444322 245667889988887 55555533 222 222
Q ss_pred eeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCC------------CceEEEEecCCCeEEEEeccCc----EEEEE
Q 020609 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV------------NGKVLTYSAQDSIYKVFDLKNY----TMLYS 230 (323)
Q Consensus 167 Cr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdv------------N~kilty~aq~~~YrVfdlknY----s~LYs 230 (323)
. . +++.++...... +. ..-...--+.|+.. ++..++....++..++||+++- .++..
T Consensus 129 v--~---d~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 129 V--V---EFKENGTTSPII-ID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp E--E---ECCTTSCCCEEE-EE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred E--E---ecCCCCceeeEE-ec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence 2 2 222221100000 10 00011123455554 7888888899999999999863 34444
Q ss_pred ec--ccceeeEEEcCC----EEEEEEecCCCeeeEEEEEeecCceeeeeeec--cccCCcc---hhhhhccceeEEEecC
Q 020609 231 IS--DKNVQEIKISPG----IMLLIFTKASGHVPLKILSIEDGTVLKSFNHL--LHRNKKV---DFIEQFNEKLLVKQEN 299 (323)
Q Consensus 231 Is--de~VqEIkIS~G----imll~~q~~~~~iPlkIlsIedG~~l~~~~~~--L~~sk~i---qFiE~f~EkLLIKQE~ 299 (323)
+. ...|..+.++|. -+|+.--.. +. ++|+++.+|+........ ......+ .|- .-+.+|+.=-.+
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~d 277 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQD-RT--CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-LSGNVLALSGGD 277 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETT-SC--EEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-SSSCCEEEEESS
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCC-CE--EEEEeCCCCCccceeeeeccccCCCcEEEEEEc-CCCCEEEEecCC
Confidence 43 567889999974 555554433 33 688999988633222111 1122222 322 235567777789
Q ss_pred CceeEEecccc
Q 020609 300 ENLQILDESNS 310 (323)
Q Consensus 300 ~~LqI~Dl~~~ 310 (323)
..++|||+...
T Consensus 278 g~i~iw~~~~~ 288 (379)
T 3jrp_A 278 NKVTLWKENLE 288 (379)
T ss_dssp SSEEEEEEEET
T ss_pred CcEEEEeCCCC
Confidence 99999999843
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.028 Score=47.86 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=115.8
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
+..+++....|....||..+++.+..+. .+..-|.++-++..+..|++.+ .|. .++.. +++.++. .
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~---~d~--~i~i~-----d~~~~~~---~ 282 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSAS---DDG--TLRIW-----HGGNGNS---Q 282 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEE---TTS--CEEEE-----CSSSBSC---S
T ss_pred CCEEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEc---CCC--EEEEE-----ECCCCcc---c
Confidence 4556777788999999999998888776 4556689999998877666543 222 22222 2222222 1
Q ss_pred cceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeeEEE
Q 020609 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKI 261 (323)
Q Consensus 185 ~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkI 261 (323)
..|.. .-...--+.|...+ .++....++..++||+++.+.+..+. ...+..+.++| |-+|+.-... + -+.|
T Consensus 283 ~~~~~-~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i 356 (425)
T 1r5m_A 283 NCFYG-HSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD-G--QVNV 356 (425)
T ss_dssp EEECC-CSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT-S--CEEE
T ss_pred eEecC-CCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC-C--eEEE
Confidence 11110 11112345666544 55556789999999999999887776 46788899985 4444444332 3 3678
Q ss_pred EEeecCc--------------------eeeeeeeccccC----CcchhhhhccceeEEEecCCceeEEecc
Q 020609 262 LSIEDGT--------------------VLKSFNHLLHRN----KKVDFIEQFNEKLLVKQENENLQILDES 308 (323)
Q Consensus 262 lsIedG~--------------------~l~~~~~~L~~s----k~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (323)
+++.+++ .+..+.. |.. ..+.|- .-+.+|++=-.+..++|||+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS--SQDNDYIFDLSWN-CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECHHHHC--------------CEECCEEEEECC--TTCCCCEEEEEEC-TTSSEEEEEESSSCCEEEECC
T ss_pred EECCCCccceeeeecccccccCcccchhhhhhcC--cccCCceEEEEcc-CCCceEEEEecCceEEEEeec
Confidence 9999998 6666652 322 234432 234578788899999999984
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.11 E-value=0.028 Score=49.94 Aligned_cols=187 Identities=14% Similarity=0.231 Sum_probs=116.0
Q ss_pred ccceeEEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020609 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (323)
Q Consensus 95 RS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~ 174 (323)
...|..+-....++++-...|....||..+++.+..+.. +..-|.++-++.....+++.| .|. .++.- +
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~---~dg--~i~vw-----d 338 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISAS---MDT--TIRIW-----D 338 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEE---TTS--CEEEE-----E
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEe---CCC--cEEEE-----E
Confidence 445556655567888888899999999999998888864 556789999999877777644 222 23332 2
Q ss_pred hhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceee-EEEc-CCEEEEE
Q 020609 175 IRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQE-IKIS-PGIMLLI 249 (323)
Q Consensus 175 i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqE-IkIS-~Gimll~ 249 (323)
++.|+ ++.+-. .|++ .+.|+ ++.++-...|+..+|||+.+...++.....+... +.++ +|-+++.
T Consensus 339 ~~~~~-----~~~~~~--~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 339 LENGE-----LMYTLQ--GHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS 408 (464)
T ss_dssp TTTTE-----EEEEEC--CCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEE
T ss_pred CCCCc-----EEEEEe--CCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEE
Confidence 22222 222111 1333 34454 5666666789999999999999999886654333 3444 3444444
Q ss_pred EecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEecc
Q 020609 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDES 308 (323)
Q Consensus 250 ~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (323)
-. .+ -++|.++++|+.+..+. ......+.=+.--+..|++==.+.....|+++
T Consensus 409 ~~--dg--~i~iwd~~~g~~~~~~~--~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 409 GS--EN--QFNIYNLRSGKLVHANI--LKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EE--TT--EEEEEETTTCCEEESCT--TTTCSEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ec--CC--eEEEEECCCCcEEehhh--ccCCCcEEEEEecCCEEEEEEEeCCeEEEEEe
Confidence 33 34 47999999999998643 22244433233246666665444444444443
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.11 E-value=0.036 Score=48.08 Aligned_cols=199 Identities=9% Similarity=0.062 Sum_probs=123.3
Q ss_pred cccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeee
Q 020609 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 94 kRS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (323)
....|..+-.. ..+++.-...|....||..+++.+..+. .+..-|.++-++.....|++.| .|. .++.-
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~---~d~--~v~iw--- 208 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSAS---LDG--TIRLW--- 208 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEEEEETTTTEEEEEE---TTS--CEEEE---
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEEEEcCCCCEEEEEc---CCC--cEEEe---
Confidence 44567777665 3467777788999999999999888885 4566789999998877777644 222 22222
Q ss_pred hhhhhhCCCC--------CCCccee------------ecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe
Q 020609 172 IEYIRRGKPD--------AGFALFE------------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 231 (323)
Q Consensus 172 i~~i~~Gk~~--------~g~~LFe------------~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI 231 (323)
+++.|+.- ...+... ...-...--+.|+ .+|+.++....++..++||+++-+.+..+
T Consensus 209 --d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 285 (420)
T 3vl1_A 209 --ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-TYGKYVIAGHVSGVITVHNVFSKEQTIQL 285 (420)
T ss_dssp --ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred --ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc-CCCCEEEEEcCCCeEEEEECCCCceeEEc
Confidence 22222210 0000000 0000111123343 36778888888999999999999998888
Q ss_pred cc---cceeeEEEcCCE--EEEEEecCCCeeeEEEEEeecCce-eeeeeeccccCCcchhhhhccc-eeEEEecCCceeE
Q 020609 232 SD---KNVQEIKISPGI--MLLIFTKASGHVPLKILSIEDGTV-LKSFNHLLHRNKKVDFIEQFNE-KLLVKQENENLQI 304 (323)
Q Consensus 232 sd---e~VqEIkIS~Gi--mll~~q~~~~~iPlkIlsIedG~~-l~~~~~~L~~sk~iqFiE~f~E-kLLIKQE~~~LqI 304 (323)
.. ..+..+.++|.- +|+.-. ..+ -++|+++.+|+. +..+. .|+...+.-+---.. .|+.=-++..+++
T Consensus 286 ~~~~~~~v~~~~~~~~~~~~l~~g~-~dg--~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 286 PSKFTCSCNSLTVDGNNANYIYAGY-ENG--MLAQWDLRSPECPVGEFL--INEGTPINNVYFAAGALFVSSGFDTSIKL 360 (420)
T ss_dssp CCTTSSCEEEEEECSSCTTEEEEEE-TTS--EEEEEETTCTTSCSEEEE--ESTTSCEEEEEEETTEEEEEETTTEEEEE
T ss_pred ccccCCCceeEEEeCCCCCEEEEEe-CCC--eEEEEEcCCCcCchhhhh--ccCCCCceEEEeCCCCEEEEecCCccEEE
Confidence 64 458888888652 333322 223 368899999865 44444 234555554433333 4555558899999
Q ss_pred Eeccc
Q 020609 305 LDESN 309 (323)
Q Consensus 305 ~Dl~~ 309 (323)
||+.+
T Consensus 361 w~~~~ 365 (420)
T 3vl1_A 361 DIISD 365 (420)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 99987
No 53
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.09 E-value=0.048 Score=47.67 Aligned_cols=192 Identities=10% Similarity=0.110 Sum_probs=118.9
Q ss_pred chhhhhhccccceeeecccccEEEEEeC----CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCC
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNV----TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~----s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~ 181 (323)
.++++-...|....||..+++.+..+.. .+...|.++-++..+.-+++ . +.+ ..++. .+ +..|+
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s--~--~~d-~~v~~--~d---~~~~~-- 202 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS--Q--MQA-NAVHV--FD---LKTLA-- 202 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE--E--GGG-TEEEE--EE---TTTCC--
T ss_pred eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE--E--CCC-CEEEE--EE---CCCce--
Confidence 3445555567788899999987765443 55667888888664443322 2 122 22222 22 22222
Q ss_pred CCCcceee-cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcC-C-EEEEEEecCCCee
Q 020609 182 AGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISP-G-IMLLIFTKASGHV 257 (323)
Q Consensus 182 ~g~~LFe~-~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~-G-imll~~q~~~~~i 257 (323)
.+..- ..-.+|..+.|+..+..+++....++..++||+++-+.+..+.. ..+..+.++| | .++..........
T Consensus 203 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 203 ---YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp ---EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred ---EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc
Confidence 12111 22346778899987777777777899999999999998888764 3577788873 4 3333333322222
Q ss_pred ----eEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEeccccceee
Q 020609 258 ----PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDESNSGCLE 314 (323)
Q Consensus 258 ----PlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~l~e 314 (323)
-+.++++.+|+.+..+.+. ..-..+.|- .-+.+|++- ..+..+.+||+.+.++..
T Consensus 280 ~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~-~~g~~l~~~~~~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLIDTIGPP-GNKRHIVSG-NTENKIYVSDMCCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEE-ECEEEEEEC-SSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cCCCeEEEEECCCCcEEeeccCC-CCcceEEEC-CCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence 5789999999888766432 111223331 224567776 688899999999877654
No 54
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.12 Score=46.45 Aligned_cols=197 Identities=10% Similarity=-0.005 Sum_probs=121.9
Q ss_pred cceeEEeeccc--hh-hhhhccccceeeecc--cccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeee
Q 020609 96 SKIIEIVAARD--IV-FALAQSGVCAAFCRE--TNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (323)
Q Consensus 96 S~V~EIv~a~d--iI-~aL~~sG~c~af~r~--tn~~iC~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (323)
..|..+....| .+ ++-...|...+||.. +++.+..++. ....-|.++-++..+..|++.+. | -.++.
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~----g~v~~ 175 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---F----GDVYS 175 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---T----SEEEE
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC---C----CcEEE
Confidence 34666655432 33 444467999999998 8998888874 45567889999988777766431 1 23444
Q ss_pred eehhhhhhCCCCC-CCcceeecccCCCCeEEecCC--CceEEEEecCCCeEEEEeccCcEEEEEec---ccceeeEEEcC
Q 020609 170 TRIEYIRRGKPDA-GFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISP 243 (323)
Q Consensus 170 ~~i~~i~~Gk~~~-g~~LFe~~~L~~PgFVEFDdv--N~kilty~aq~~~YrVfdlknYs~LYsIs---de~VqEIkIS~ 243 (323)
.++.. ++... ....+.. .-...--+.|... .++.++....|+..++||+.+-+++..+. ...|..+.+++
T Consensus 176 ~~~~~---~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd 251 (450)
T 2vdu_B 176 IDINS---IPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGK 251 (450)
T ss_dssp EETTS---CCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECS
T ss_pred EecCC---cccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECC
Confidence 54432 22211 1011111 1122234567665 36677777789999999999988887733 35678888886
Q ss_pred CEEEEEEecCCCeeeEEEEEeecCceeeeeeecc--------ccCCc-----------------chhhhhccceeEEEe-
Q 020609 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL--------HRNKK-----------------VDFIEQFNEKLLVKQ- 297 (323)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L--------~~sk~-----------------iqFiE~f~EkLLIKQ- 297 (323)
|-+|+.-- ..+ -++|+++.+|+.+..+...- .+..+ +.|.. -+.+|++=-
T Consensus 252 ~~~l~s~~-~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~ 327 (450)
T 2vdu_B 252 DYLLLSAG-GDD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVE 327 (450)
T ss_dssp TTEEEEEE-SSS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEET
T ss_pred CCEEEEEe-CCC--eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEEC
Confidence 66655444 233 47899999999988775210 00001 11110 156777776
Q ss_pred cCCceeEEec
Q 020609 298 ENENLQILDE 307 (323)
Q Consensus 298 E~~~LqI~Dl 307 (323)
.+..+.|||+
T Consensus 328 ~d~~i~iw~~ 337 (450)
T 2vdu_B 328 ATKCIIILEM 337 (450)
T ss_dssp TCSEEEEEEE
T ss_pred CCCeEEEEEe
Confidence 7899999999
No 55
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.05 E-value=0.073 Score=46.42 Aligned_cols=178 Identities=17% Similarity=0.265 Sum_probs=114.1
Q ss_pred chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCc
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~ 185 (323)
..+++-...|....|+..+++....+... ...|.++=++.....|++.| .|. .+ +.. +++.|++
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~lasg~---~dg--~i--~iw---d~~~~~~----- 198 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLASGA---IDG--II--NIF---DIATGKL----- 198 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSEEEEEE---TTS--CE--EEE---ETTTTEE-----
T ss_pred CEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCEEEEEc---CCC--eE--EEE---ECCCCcE-----
Confidence 35555667788899999999988877654 45678888888777766533 222 12 222 2333321
Q ss_pred ceeecc-cCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEEecCCCeeeEEE
Q 020609 186 LFESES-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKI 261 (323)
Q Consensus 186 LFe~~~-L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPlkI 261 (323)
+.+-.. -...--+.|+. +|+.|+....|+..++||+++-+++..+.. ..|..+.++| |-.|+.-- ..+ -++|
T Consensus 199 ~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~--~v~i 274 (321)
T 3ow8_A 199 LHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDK--SVKV 274 (321)
T ss_dssp EEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTS--CEEE
T ss_pred EEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCC--cEEE
Confidence 211110 01123467765 566777777899999999999998888764 4478888885 44433332 233 3789
Q ss_pred EEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEec
Q 020609 262 LSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDE 307 (323)
Q Consensus 262 lsIedG~~l~~~~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl 307 (323)
.++.+|+++..+.. | ... +.|-. -+.+|+-=-++..++|||+
T Consensus 275 wd~~~~~~~~~~~~--h-~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 275 WDVGTRTCVHTFFD--H-QDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EETTTTEEEEEECC--C-SSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred EeCCCCEEEEEEcC--C-CCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 99999999987752 2 333 33322 2456777778999999996
No 56
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.04 E-value=0.12 Score=45.62 Aligned_cols=188 Identities=13% Similarity=0.224 Sum_probs=114.3
Q ss_pred hhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcc
Q 020609 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~L 186 (323)
.++.-..-|....||..+++....+.. +...|.++-|+.....+++.+ .|+ .|+..++.. ++. .+..-
T Consensus 78 ~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~lasg~---~d~----~i~v~~~~~---~~~-~~~~~ 145 (354)
T 2pbi_B 78 RIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGG---LDN----KCSVYPLTF---DKN-ENMAA 145 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEEES---TTS----EEEEEECCC---CTT-CCSGG
T ss_pred EEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEEee---CCC----CEEEEEEec---ccc-ccccc
Confidence 555566778999999999988877765 344577888888776665533 222 233332211 110 01000
Q ss_pred eeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC---CEEEEEEecCCCeee
Q 020609 187 FESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP---GIMLLIFTKASGHVP 258 (323)
Q Consensus 187 Fe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~---Gimll~~q~~~~~iP 258 (323)
-....-.|.+. +.|...+..++|. ..|+..++||+.+-+++..+. ...|.-+.+++ |-.++.--... -
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg---~ 221 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTA-SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK---K 221 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS---C
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC---e
Confidence 00111124443 4566655566664 568999999999999887775 34566666654 44444433222 3
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEecccccee
Q 020609 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 259 lkIlsIedG~~l~~~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+++.++.+|+.+..+.. | ..+|.-+.- -+..|+.=-.+..+++||+++.+..
T Consensus 222 v~~wd~~~~~~~~~~~~--h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFET--H-ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp EEEEETTTCCEEEEECC--C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEECCCCcEEEEecC--C-CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 68899999998887641 2 333322221 2456777778999999999886543
No 57
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.01 E-value=0.12 Score=43.36 Aligned_cols=188 Identities=11% Similarity=0.090 Sum_probs=118.1
Q ss_pred hhhhhccccceeeecccccEEEEEeCCCCc--------eEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCC
Q 020609 108 VFALAQSGVCAAFCRETNQRICFLNVTADE--------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (323)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~LN~s~dE--------vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk 179 (323)
+++-...|...+||..|++.+..+...... -++++-++...+.+++.+ ...+. .....+. ..|+
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~----~i~~~d~---~~~~ 175 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG-IGKES----VIWVVDG---GNIK 175 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE-ESSSC----EEEEEET---TTTE
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe-cCCCc----eEEEEcC---CCCc
Confidence 333344578889999999988888774432 378899998777665533 22221 1222322 2222
Q ss_pred CCCCCcceeec-ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc------cceeeEEEcC-CEEEEEEe
Q 020609 180 PDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KNVQEIKISP-GIMLLIFT 251 (323)
Q Consensus 180 ~~~g~~LFe~~-~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd------e~VqEIkIS~-Gimll~~q 251 (323)
. .-.-. .-.+|.-+.|+.....+.+.+ .++...+||+.+.+.+..+.. ..+..+.++| |-.+++-.
T Consensus 176 ~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 176 L-----KTAIQNTGKMSTGLALDSEGKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp E-----EEEECCCCTTCCCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred e-----EEEecCCCCccceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 1 11111 234577788887666666554 477888999999998877653 1355678873 44445544
Q ss_pred cCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEeccccceee
Q 020609 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDESNSGCLE 314 (323)
Q Consensus 252 ~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~~~l~e 314 (323)
...+. +.++++++|+.+..+.. +....+.|- .-+.+|++-. ++..+.+||+.+.++..
T Consensus 250 ~~~~~--v~~~d~~~~~~~~~~~~--~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 250 SKAAE--VLVVDTRNGNILAKVAA--PESLAVLFN-PARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp SSSSE--EEEEETTTCCEEEEEEC--SSCCCEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCE--EEEEECCCCcEEEEEEc--CCCceEEEC-CCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 44343 57899999999887763 333334432 2245677766 68899999999887664
No 58
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.01 E-value=0.13 Score=45.80 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=115.0
Q ss_pred eeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhh
Q 020609 98 IIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (323)
Q Consensus 98 V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i 175 (323)
|..+-+. ...++.-...|....||..+++.+..+.. +..-|.++-++...+.|++.| .+ .. ++.- ++
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s----~d-~~--v~iw---d~ 194 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGS----GD-RT--VRIW---DL 194 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT-SE--EEEE---ET
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEec----CC-Cc--EEEE---EC
Confidence 5555544 23566667789999999999998887764 555688999998887776644 22 12 2222 33
Q ss_pred hhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec---------ccceeeEEEcC-CE
Q 020609 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---------DKNVQEIKISP-GI 245 (323)
Q Consensus 176 ~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs---------de~VqEIkIS~-Gi 245 (323)
+.|+. ...-..-...--+.|...+|+.++....|+..++||+++-.++..+. ...|..+.++| |-
T Consensus 195 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 195 RTGQC-----SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp TTTEE-----EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred CCCee-----EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 33321 11111111223456777788888888899999999999988877763 24577777774 44
Q ss_pred EEEEEecCCCeeeEEEEEeecCceeeeee---------eccccCCc---chhhhhccceeEEEecCCceeEEecccccee
Q 020609 246 MLLIFTKASGHVPLKILSIEDGTVLKSFN---------HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~~~---------~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+|+.- ...+. ++|.++.++....... .+..+... +.|- .-+.+|+.=-++..+++||+.+.+..
T Consensus 270 ~l~s~-s~d~~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 270 SVVSG-SLDRS--VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp EEEEE-ETTSE--EEEEEC---------------CEEEEEECCSSCEEEEEEC-GGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEE-eCCCE--EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 43332 22232 5778877654322100 00111221 1111 12456777778999999999987765
Q ss_pred e
Q 020609 314 E 314 (323)
Q Consensus 314 e 314 (323)
.
T Consensus 346 ~ 346 (393)
T 1erj_A 346 L 346 (393)
T ss_dssp E
T ss_pred E
Confidence 4
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.98 E-value=0.04 Score=46.04 Aligned_cols=180 Identities=9% Similarity=0.109 Sum_probs=107.9
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCC---CeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeec
Q 020609 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN---DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE 190 (323)
Q Consensus 114 sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~N---dSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~ 190 (323)
.|....||..+++........+..-|.++-++..+ +-|++.+ .|. .++. . ++..++ .++..
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---~dg--~i~i--w---d~~~~~----~~~~~-- 106 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD---FGG--NLHI--W---NLEAPE----MPVYS-- 106 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE---TTS--CEEE--E---CTTSCS----SCSEE--
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec---CCC--eEEE--E---eCCCCC----ccEEE--
Confidence 68899999999998877776777788999999874 4444432 232 1222 2 222222 01111
Q ss_pred ccCCCCeE---Eec-----CCCceEEEEecCCCeEEEEeccCcE-EEEEecc------cceeeEEE----c-CCEEEEEE
Q 020609 191 SLKWPGFV---EFD-----DVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD------KNVQEIKI----S-PGIMLLIF 250 (323)
Q Consensus 191 ~L~~PgFV---EFD-----dvN~kilty~aq~~~YrVfdlknYs-~LYsIsd------e~VqEIkI----S-~Gimll~~ 250 (323)
.-.|.+-| .|. ..+++.++....++..++||+++-+ .+..+.. ..+..+.. + +|-+++.-
T Consensus 107 ~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (357)
T 3i2n_A 107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG 186 (357)
T ss_dssp ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE
Confidence 01233332 222 2456677777889999999999876 5555532 25556652 2 44444443
Q ss_pred ecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEecccccee
Q 020609 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 251 q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
... + -++++++++++.+....+. ..-..+.|-.. -+++|+.=-++..+++||+.+.+..
T Consensus 187 ~~d-~--~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 187 YDN-G--DIKLFDLRNMALRWETNIK-NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp ETT-S--EEEEEETTTTEEEEEEECS-SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred ccC-C--eEEEEECccCceeeecCCC-CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 322 2 4788999999986654431 11222333322 4578888889999999999876543
No 60
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.98 E-value=0.15 Score=44.02 Aligned_cols=202 Identities=14% Similarity=0.168 Sum_probs=121.9
Q ss_pred cccceeEEeecc---chhhhhhccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeee
Q 020609 94 KRSKIIEIVAAR---DIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (323)
Q Consensus 94 kRS~V~EIv~a~---diI~aL~~sG~c~af~r~tn~~iC~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (323)
....|..+-... .++++-...|....||..++....+... ..+.-|.++-++.....|++.| .+ .. .+.
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d-~~--i~i 189 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD----ST-GR--LLL 189 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEE----TT-SE--EEE
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEEC----CC-CC--EEE
Confidence 456677776654 5777778889999999986554444433 3457799999999887666533 22 22 222
Q ss_pred eehhhhhhCCCCCCCcceeec-ccCCCCeEEecCCCceEEEEecCCCeEEEEeccC----cEEEEEec-ccceeeEEEcC
Q 020609 170 TRIEYIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSIS-DKNVQEIKISP 243 (323)
Q Consensus 170 ~~i~~i~~Gk~~~g~~LFe~~-~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlkn----Ys~LYsIs-de~VqEIkIS~ 243 (323)
.++ +|+ ++..-. .-...--+.|+..+..+++-...|+..++||+++ -.++..+. ...|..+.++|
T Consensus 190 ~d~----~~~-----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 260 (383)
T 3ei3_B 190 LGL----DGH-----EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260 (383)
T ss_dssp EET----TSC-----EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECT
T ss_pred EEC----CCC-----EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcC
Confidence 222 222 222111 1112224567765553666677899999999998 56666654 45688899986
Q ss_pred --CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccc----cCCcch--hhhhccceeEEEe---------cCCceeEEe
Q 020609 244 --GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH----RNKKVD--FIEQFNEKLLVKQ---------ENENLQILD 306 (323)
Q Consensus 244 --Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~----~sk~iq--FiE~f~EkLLIKQ---------E~~~LqI~D 306 (323)
|-+|+.-.. .+ -++|+++.+|+.+..+...-. ....+. |- .-+..+.+.- ++..++|||
T Consensus 261 ~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~s~dg~~s~s~d~~i~iwd 336 (383)
T 3ei3_B 261 TDSTKLLTTDQ-RN--EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWH-PMYDLIVAGRYPDDQLLLNDKRTIDIYD 336 (383)
T ss_dssp TTSCEEEEEES-SS--EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEEC-SSSSEEEEECBCCTTTCTTCCCCEEEEE
T ss_pred CCCCEEEEEcC-CC--cEEEEECCCCccccccccccccccccccceEEecc-CCCCceEEEecCCcccccCCCCeEEEEe
Confidence 555444433 23 378999999998876652111 011111 00 0123333332 688999999
Q ss_pred ccccceeee
Q 020609 307 ESNSGCLEL 315 (323)
Q Consensus 307 l~~~~l~ev 315 (323)
+.+.++...
T Consensus 337 ~~~~~~~~~ 345 (383)
T 3ei3_B 337 ANSGGLVHQ 345 (383)
T ss_dssp TTTCCEEEE
T ss_pred cCCCceeee
Confidence 998877543
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.98 E-value=0.042 Score=52.34 Aligned_cols=186 Identities=14% Similarity=0.196 Sum_probs=121.3
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
...+++-...|....||..+++.+..+.. +..-|+++-++.....|++.|. |. ..+.- ++..|+
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~---dg----~i~vw---~~~~~~----- 88 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSD---DF----RIRVF---NYNTGE----- 88 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEET---TS----EEEEE---ETTTCC-----
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeC---CC----eEEEE---ECCCCc-----
Confidence 34566666789999999999999998874 5567899999998887777542 22 22222 222222
Q ss_pred cceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCc-EEEEEe--cccceeeEEEcC--CEEEEEEecCCCe
Q 020609 185 ALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKNVQEIKISP--GIMLLIFTKASGH 256 (323)
Q Consensus 185 ~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknY-s~LYsI--sde~VqEIkIS~--Gimll~~q~~~~~ 256 (323)
.+.+- -.|++ -+.|...+. .++....++..++||+.+- .+.-.+ ....|..+..+| |-+++.-... +
T Consensus 89 ~~~~~--~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g- 163 (814)
T 3mkq_A 89 KVVDF--EAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-R- 163 (814)
T ss_dssp EEEEE--ECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-S-
T ss_pred EEEEE--ecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC-C-
Confidence 22211 12344 345665444 4555667899999999875 544444 346688999987 4454443333 3
Q ss_pred eeEEEEEeecCceeeeeeeccccCCcchhhhh----ccceeEEEecCCceeEEeccccceee
Q 020609 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ----FNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 257 iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~----f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
.+.++++.+++....+.. +....+..+.- -+..|+.--.+..+++||+.+.++..
T Consensus 164 -~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 164 -TVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (814)
T ss_dssp -EEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE
T ss_pred -eEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 367889988887776652 33455555544 34578888889999999998877544
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.13 Score=42.85 Aligned_cols=201 Identities=13% Similarity=0.140 Sum_probs=117.0
Q ss_pred cccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeee
Q 020609 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 94 kRS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (323)
-...|.-+... ..++++-...|....||..+++.+..+.. +..-|.++-++...+.|++.| .|. .++.-
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~---~dg--~i~iw--- 101 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGS---ADY--SIKLW--- 101 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTT--EEEEE---
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEe---CCC--eEEEE---
Confidence 34556665554 23566667789999999999999888864 455688888888777666543 222 22222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCC-----CeEEEEeccCcEE---EEEeccc---------
Q 020609 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTM---LYSISDK--------- 234 (323)
Q Consensus 172 i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~-----~~YrVfdlknYs~---LYsIsde--------- 234 (323)
++..|+. +..-..-..+--+.|+. +|+.++....+ +..++||+.+... +...+.+
T Consensus 102 --d~~~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 102 --DVSNGQC-----VATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp --ETTTCCE-----EEEEECSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred --ECCCCcE-----EEEeecCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 2333332 22211122233466766 45556655666 9999999987652 2222222
Q ss_pred ---ceeeEEEcCC-EEEEEEecCCCeeeEEEEEeec-CceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccc
Q 020609 235 ---NVQEIKISPG-IMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESN 309 (323)
Q Consensus 235 ---~VqEIkIS~G-imll~~q~~~~~iPlkIlsIed-G~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (323)
.+..+.++|. -.++.- ...+ -+.++++.+ ++.+..+...-..-..+.|-. -+.+|+.--.+..+.+||+.+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAG-HKDG--KISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEE-ETTS--EEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred CccceeEEEEcCCCCEEEEE-cCCC--EEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCC
Confidence 4555555533 232222 2222 357888888 676666552111112233332 356777778899999999998
Q ss_pred cceeee
Q 020609 310 SGCLEL 315 (323)
Q Consensus 310 ~~l~ev 315 (323)
.++...
T Consensus 250 ~~~~~~ 255 (369)
T 3zwl_B 250 LQVLKK 255 (369)
T ss_dssp CCEEEE
T ss_pred Cceeee
Confidence 776543
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.95 E-value=0.06 Score=44.83 Aligned_cols=187 Identities=11% Similarity=0.168 Sum_probs=110.8
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
...++.-...|....||..+..........+...|.++-+.......+++|. +.+ ..++. -+++.+++
T Consensus 140 ~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~--~~d-~~i~i-----~d~~~~~~---- 207 (340)
T 4aow_A 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC--GWD-KLVKV-----WNLANCKL---- 207 (340)
T ss_dssp SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE--ETT-SCEEE-----EETTTTEE----
T ss_pred CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE--cCC-CEEEE-----EECCCCce----
Confidence 4455555667888889887766666666677778888877766655555442 233 12222 22232221
Q ss_pred cceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-ceeeEEEcCCEEEEEEecCCCeeeEE
Q 020609 185 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLK 260 (323)
Q Consensus 185 ~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde-~VqEIkIS~Gimll~~q~~~~~iPlk 260 (323)
+. ....|.+. +.|+. +|+.++-...|+..++||+.+...++.+... .+..+..+|+-.++..- ..+. ++
T Consensus 208 -~~--~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~--i~ 280 (340)
T 4aow_A 208 -KT--NHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA-TGPS--IK 280 (340)
T ss_dssp -EE--EECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEE-ETTE--EE
T ss_pred -ee--EecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeecc-CCCE--EE
Confidence 11 11123333 45654 5666666778999999999999999888654 45666676543333322 2233 67
Q ss_pred EEEeecCceeeeeeecc------ccCCcchhhh--hccceeEEEecCCceeEEecccc
Q 020609 261 ILSIEDGTVLKSFNHLL------HRNKKVDFIE--QFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 261 IlsIedG~~l~~~~~~L------~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
|.++++++.+..+.... .+...|-=+. .-+.+|+.==+|..++|||+.+.
T Consensus 281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 88999988877664211 1122221111 12456676678899999999763
No 64
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.92 E-value=0.015 Score=47.43 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=73.6
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCc----EEEEEe--cccceeeEEEcC---CEEEEEEecCCCeeeEEEEEeecCc
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSI--SDKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGT 268 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknY----s~LYsI--sde~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~ 268 (323)
+.|+. +|+.|+....|+..++||+.+- +++..+ ....|..+.++| |-+|+.-.... -++|.++.+|+
T Consensus 17 ~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg---~v~vwd~~~~~ 92 (351)
T 3f3f_A 17 VVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK---TVKLWEEDPDQ 92 (351)
T ss_dssp EEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS---CEEEEEECTTS
T ss_pred EEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC---eEEEEecCCCc
Confidence 45665 6777777788999999999865 344433 457799999986 76766554433 36889999884
Q ss_pred ---------eeeeeeeccccCCcch---hhhhc-cceeEEEecCCceeEEecccccee
Q 020609 269 ---------VLKSFNHLLHRNKKVD---FIEQF-NEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 269 ---------~l~~~~~~L~~sk~iq---FiE~f-~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
.+..+. .+...+. |...- +.+|+.--.+..+++||+.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 93 EECSGRRWNKLCTLN---DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp CTTSSCSEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred ccccccCcceeeeec---ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 344333 2234433 33322 556777789999999999887643
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.89 E-value=0.12 Score=43.64 Aligned_cols=186 Identities=9% Similarity=0.086 Sum_probs=112.9
Q ss_pred hhhhhhccccceeeeccccc--EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 107 IVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~--~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
++++-...|....||..+++ .+..+. .+..-|.++-++...+.|++.| .|. .++.-.+ ..|+.
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~---~dg--~i~vwd~-----~~~~~---- 86 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCG---TDR--NAYVWTL-----KGRTW---- 86 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEE---TTS--CEEEEEE-----ETTEE----
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEc---CCC--eEEEEEC-----CCCee----
Confidence 55555578999999999998 566665 4666889999999777776644 222 2333322 22210
Q ss_pred cceeecccCC---CCeEEecCCCceEEEEecCCCeEEEEeccCcE---EEEEec---ccceeeEEEcC-CEEEEEEecCC
Q 020609 185 ALFESESLKW---PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS---DKNVQEIKISP-GIMLLIFTKAS 254 (323)
Q Consensus 185 ~LFe~~~L~~---PgFVEFDdvN~kilty~aq~~~YrVfdlknYs---~LYsIs---de~VqEIkIS~-Gimll~~q~~~ 254 (323)
........+ .--+.|.. +|+.++....++..++||+..-+ .+..+. ...|..+.++| |-+++.-.. .
T Consensus 87 -~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 163 (372)
T 1k8k_C 87 -KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-D 163 (372)
T ss_dssp -EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-T
T ss_pred -eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC-C
Confidence 111111112 22456665 46667777789999999998865 233332 45688888885 444443332 2
Q ss_pred CeeeEEEEEe------------------ecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccceee
Q 020609 255 GHVPLKILSI------------------EDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 255 ~~iPlkIlsI------------------edG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
+ -++++++ .+|+.+..+.. +...+.-+. .-+.+|+.=-++..+++||+.+.++..
T Consensus 164 g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 164 F--KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp S--CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred C--CEEEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence 2 2577884 46777776641 122222222 234578888899999999999887654
Q ss_pred e
Q 020609 315 L 315 (323)
Q Consensus 315 v 315 (323)
.
T Consensus 239 ~ 239 (372)
T 1k8k_C 239 T 239 (372)
T ss_dssp E
T ss_pred E
Confidence 3
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.89 E-value=0.1 Score=42.90 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=100.0
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
..+++.-...|....++..++...-..-..+...+.++.+......|++.+ .|. .++ +=+++.|+....
T Consensus 119 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~--~i~-----iwd~~~~~~~~~- 187 (318)
T 4ggc_A 119 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG---NDN--LVN-----VWPSAPGEGGWV- 187 (318)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTS--CEE-----EEESSCBTTBSC-
T ss_pred CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe---cCc--cee-----EEECCCCccccc-
Confidence 444555555666666666655433333334555667777777666655432 232 222 223333332111
Q ss_pred cceeecccCCCC---eEEecCCCceEE--EEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEEEec-CCCe
Q 020609 185 ALFESESLKWPG---FVEFDDVNGKVL--TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTK-ASGH 256 (323)
Q Consensus 185 ~LFe~~~L~~Pg---FVEFDdvN~kil--ty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~~q~-~~~~ 256 (323)
.......+.+ .+.+...++.++ +....++..++||+.......... ...+..+..++ +-.+++... ..+.
T Consensus 188 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 188 --PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp --CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred --ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE
Confidence 1111122222 234444444443 344568899999999988655443 33344444442 222222221 2222
Q ss_pred eeEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEecccc
Q 020609 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 257 iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
++|.++.+|+.+..+. .+...|--+.-. +.+|+-=-+|..++|||+...
T Consensus 266 --i~iwd~~~~~~~~~l~---gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 266 --LVIWKYPTMAKVAELK---GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp --EEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred --EEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 6789999999999876 224454433322 445665678999999999653
No 67
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.83 E-value=0.15 Score=45.16 Aligned_cols=188 Identities=16% Similarity=0.170 Sum_probs=112.0
Q ss_pred hhhhhhccccceeeecccccEEEEEe----CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCC
Q 020609 107 IVFALAQSGVCAAFCRETNQRICFLN----VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~LN----~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~ 182 (323)
.++.-..-|.+..||..+++.+..+. ..+..-|.++-+|..+..++. +...|. .+ +.- +++.+. .
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~--sgs~D~--~v--~~w---d~~~~~--~ 240 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI--SGSCDT--TV--RLW---DLRITS--R 240 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE--EEETTS--CE--EEE---ETTTTC--C
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE--EEECCC--eE--EEE---ECCCCC--c
Confidence 35555667899999999999998775 345667889988886666555 222333 22 222 232111 0
Q ss_pred CCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc---------eeeEEEcC-CEEEEEEec
Q 020609 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN---------VQEIKISP-GIMLLIFTK 252 (323)
Q Consensus 183 g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~---------VqEIkIS~-Gimll~~q~ 252 (323)
....|.. --..---+.|.. +|+.++-...|+..|+||+++-.++..+..+. |..+.++| |-+|+.--
T Consensus 241 ~~~~~~~-h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~- 317 (380)
T 3iz6_a 241 AVRTYHG-HEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY- 317 (380)
T ss_dssp CCEEECC-CSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-
T ss_pred ceEEECC-cCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-
Confidence 0011111 001122356665 45566666789999999999998887765432 55666664 44433322
Q ss_pred CCCeeeEEEEEeecCceeeeeeecc-ccCCcchhhhh--ccceeEEEecCCceeEEecccc
Q 020609 253 ASGHVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQ--FNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 253 ~~~~iPlkIlsIedG~~l~~~~~~L-~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
..+ -+.|.++.+|+.+..+.... .+...|-=+.. -+..|+-=-.+..++|||+..+
T Consensus 318 ~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 318 SNG--DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp TTS--CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCC--CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 222 36788999999887764221 22333322221 2456666678999999999865
No 68
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.74 E-value=0.093 Score=50.52 Aligned_cols=190 Identities=10% Similarity=0.068 Sum_probs=120.6
Q ss_pred chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCc
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~ 185 (323)
.++++-...|.-+++|..|++.+-.+..... ++++-++...+.|.+.| .| .. .+.+++.. .. +..
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~---~d--~~--V~v~D~~~-~t-----~~~ 214 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIG---RD--AR--IDMIDLWA-KE-----PTK 214 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEE---TT--SE--EEEEETTS-SS-----CEE
T ss_pred EEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEEC---CC--Ce--EEEEECcC-CC-----CcE
Confidence 4555566778889999999999988886554 89998999888877755 12 12 22222200 11 112
Q ss_pred ceeecccCCCCeEEecC----CCceEEEEecCCCeEEEEeccCcEEEEEecc------------c-ceeeEEEcC-CEEE
Q 020609 186 LFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------------K-NVQEIKISP-GIML 247 (323)
Q Consensus 186 LFe~~~L~~PgFVEFDd----vN~kilty~aq~~~YrVfdlknYs~LYsIsd------------e-~VqEIkIS~-Giml 247 (323)
+-+-..-.+|-.+.|+. -...+.+.+..++.++|||..+.+++-.|+- + .+..|.+|+ |-.+
T Consensus 215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 22222234688899987 4555666666689999999999999888863 1 577888885 3333
Q ss_pred EEEecCCCeeeEEEEEeecCceeeeeeeccccCC---cchhhhhccceeEEE-ecCCceeEEeccccceeee
Q 020609 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK---KVDFIEQFNEKLLVK-QENENLQILDESNSGCLEL 315 (323)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk---~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~l~ev 315 (323)
++-....+ -+.+++..+++.+..... .... .+- +-.-+.++|+= +.+..+.+||+.+.++...
T Consensus 295 ~vs~~~~g--~i~vvd~~~~~~l~~~~i--~~~~~~~~~~-~spdg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 295 IVNVKETG--KVLLVNYKDIDNLTVTSI--GAAPFLHDGG-WDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp EEEETTTT--EEEEEECTTSSSCEEEEE--ECCSSCCCEE-ECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEEECCCC--eEEEEEecCCCcceeEEe--ccCcCccCce-ECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 34333333 356788877776552111 1111 111 12346678875 4577999999999988653
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.19 Score=42.20 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=111.4
Q ss_pred chhhhhhccccceeeecc--cccEEEEEeCCCCceEEEEEeecC--CCeEEEEEeEecCCCceeeeeeeehhhhhhCCCC
Q 020609 106 DIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~--tn~~iC~LN~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~ 181 (323)
.++++-...|....||.. +++.+..+. .+...|.++-++.. .+-|++.| .|. .++.-. +..|+.
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~---~dg--~v~iwd-----~~~~~~- 91 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCS---YDG--KVLIWK-----EENGRW- 91 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEE---TTS--CEEEEE-----EETTEE-
T ss_pred CEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEec---cCC--EEEEEE-----cCCCce-
Confidence 455555678999999988 666666665 45567788887654 45555433 222 233322 222210
Q ss_pred CCCcceee-cccCCCCeEEecCCC-ceEEEEecCCCeEEEEeccCcE----EEEEecccceeeEEEcC------------
Q 020609 182 AGFALFES-ESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT----MLYSISDKNVQEIKISP------------ 243 (323)
Q Consensus 182 ~g~~LFe~-~~L~~PgFVEFDdvN-~kilty~aq~~~YrVfdlknYs----~LYsIsde~VqEIkIS~------------ 243 (323)
.++..- ..-...--+.|...+ +..++....++..++||+++-. ..+.-....|..+..+|
T Consensus 92 --~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (379)
T 3jrp_A 92 --SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 169 (379)
T ss_dssp --EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------
T ss_pred --eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCC
Confidence 011110 001112235566554 6777777889999999998863 23334456788888887
Q ss_pred --CEEEEEEecCCCeeeEEEEEeecCceeeeeeecc-ccCCcch---hhhhc--cceeEEEecCCceeEEeccccc
Q 020609 244 --GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-HRNKKVD---FIEQF--NEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 244 --Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L-~~sk~iq---FiE~f--~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
|-+++.-.... -++|+++.+++........+ .+...+. |-..- +.+|+.=-.+..++|||+.+.+
T Consensus 170 ~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 170 KESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp CTTCEEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCCEEEEEeCCC---eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 55555444333 36889999887554333211 2234333 32222 5678888889999999999863
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.63 E-value=0.26 Score=41.77 Aligned_cols=201 Identities=10% Similarity=0.120 Sum_probs=119.9
Q ss_pred cccceeEEeecc---chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCC--eEEEEEeEecCCCceeeee
Q 020609 94 KRSKIIEIVAAR---DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNND--SLITVSVYASDNFSSLRCR 168 (323)
Q Consensus 94 kRS~V~EIv~a~---diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~Nd--SlItvSvy~sd~fS~LkCr 168 (323)
....|..+.... .+++.-...|....||..+++.+..+. ..+-+.++-+...+. .++.++ ..|. .++..
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~v~~~ 171 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVG--TRGP--KVQLC 171 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEE--ESSS--SEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEE--cCCC--eEEEE
Confidence 455677776653 367777778999999999999888776 344566666665443 233321 2222 22222
Q ss_pred eeehhhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEe-------------
Q 020609 169 STRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI------------- 231 (323)
Q Consensus 169 ~~~i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs-~LYsI------------- 231 (323)
+++.|+. +..- -.+.+ -+.|...+..+++....++..++||+++-+ .+..+
T Consensus 172 -----d~~~~~~-----~~~~--~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 172 -----DLKSGSC-----SHIL--QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp -----ESSSSCC-----CEEE--CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred -----eCCCcce-----eeee--cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence 2333332 1111 12333 356777666677777889999999998766 55544
Q ss_pred ----cccceeeEEEcCC-EEEEEEecCCCeeeEEEEEeecCceeeeeeecc--c--cCCcchhhhhccceeEEEecCCce
Q 020609 232 ----SDKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL--H--RNKKVDFIEQFNEKLLVKQENENL 302 (323)
Q Consensus 232 ----sde~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L--~--~sk~iqFiE~f~EkLLIKQE~~~L 302 (323)
....|..+.++|. -+|+.- ...+. ++++++.+|+.+..+.... . ........-.....++.--.+..+
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTV-GTDNR--MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEE-ETTSC--EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred ccccccCceeEEEEcCCCCEEEEe-cCCCe--EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence 3345777888754 333333 22332 7899999998766443111 1 111111222334667777889999
Q ss_pred eEEeccccceeee
Q 020609 303 QILDESNSGCLEL 315 (323)
Q Consensus 303 qI~Dl~~~~l~ev 315 (323)
++||+.+.++...
T Consensus 317 ~v~d~~~~~~~~~ 329 (408)
T 4a11_B 317 AVYTVYSGEQITM 329 (408)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEECcCCcceee
Confidence 9999998876543
No 71
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.62 E-value=0.082 Score=43.76 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=110.3
Q ss_pred chhhhhhccccceeeecccccEEEEEeCCCCc-eEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADE-VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~s~dE-vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
+++++-...|.-.++|..|++.+..+...... -++++-++...+.+++.+ +++ ..+ ...+ +..|+.-
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~-~~v--~~~d---~~~~~~~--- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS-ESL--VKID---LVTGETL--- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT-TEE--EEEE---TTTCCEE---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCC-CeE--EEEE---CCCCCeE---
Confidence 34555567788889999999988887754322 256677777666555432 111 122 2222 2222210
Q ss_pred cceeecc----cCCCCeEEecCCCceEEEEec-----------CCCeEEEEeccCcEEEEEec-ccceeeEEEc-CCEEE
Q 020609 185 ALFESES----LKWPGFVEFDDVNGKVLTYSA-----------QDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIML 247 (323)
Q Consensus 185 ~LFe~~~----L~~PgFVEFDdvN~kilty~a-----------q~~~YrVfdlknYs~LYsIs-de~VqEIkIS-~Giml 247 (323)
..+.... -..|.-+.|+.-...+.+.+. .++...+||+.+.+.+-.+. ...+..+.++ +|-.|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 149 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKL 149 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCE
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEE
Confidence 0111111 125778899875556655431 46899999999988776665 4567788888 45444
Q ss_pred EEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCC------------------------cee
Q 020609 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE------------------------NLQ 303 (323)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~------------------------~Lq 303 (323)
++. .+ -+.++++.+|+.+..+..-- ...++.| -.-+.+|++-.++. .|.
T Consensus 150 ~~~---~~--~i~~~d~~~~~~~~~~~~~~-~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 150 YGL---GR--DLHVMDPEAGTLVEDKPIQS-WEAETYA-QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp EEE---SS--SEEEEETTTTEEEEEECSTT-TTTTTBC-CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred EEe---CC--eEEEEECCCCcEeeeeeccc-cCCCcee-CCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence 444 22 37889999999887665211 0123322 22334444433322 468
Q ss_pred EEecccccee
Q 020609 304 ILDESNSGCL 313 (323)
Q Consensus 304 I~Dl~~~~l~ 313 (323)
+||+.+.++.
T Consensus 223 ~~d~~~~~~~ 232 (337)
T 1pby_B 223 TMDLETGEMA 232 (337)
T ss_dssp EEETTTCCEE
T ss_pred EEeCCCCCce
Confidence 9999988775
No 72
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.61 E-value=0.25 Score=41.26 Aligned_cols=197 Identities=11% Similarity=0.026 Sum_probs=115.1
Q ss_pred cccceeEEeec--cc-hhhhhhccccceeeec-ccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeee
Q 020609 94 KRSKIIEIVAA--RD-IVFALAQSGVCAAFCR-ETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (323)
Q Consensus 94 kRS~V~EIv~a--~d-iI~aL~~sG~c~af~r-~tn~~iC~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr 168 (323)
....|..+-.. .. .+++-...|....||. .+++.. .+.. .+..-|.++-++. ++.|++.| .|. .+ +
T Consensus 55 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~v~~l~~~~-~~~l~s~~---~d~--~i--~ 125 (342)
T 1yfq_A 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTNNEANLGICRICKYG-DDKLIAAS---WDG--LI--E 125 (342)
T ss_dssp CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBSCCCCSCEEEEEEET-TTEEEEEE---TTS--EE--E
T ss_pred cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-eccccCCCCceEEEEeCC-CCEEEEEc---CCC--eE--E
Confidence 34556666555 33 6777788899999999 888763 3333 2677889999998 66666543 222 22 2
Q ss_pred eeehhhhhh---------CCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccC-cE----EEEEeccc
Q 020609 169 STRIEYIRR---------GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT----MLYSISDK 234 (323)
Q Consensus 169 ~~~i~~i~~---------Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlkn-Ys----~LYsIsde 234 (323)
.. +++. +++-.-.. .-..+--+.|++.. ++....++..++||+++ .. ....-.+.
T Consensus 126 iw---d~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 194 (342)
T 1yfq_A 126 VI---DPRNYGDGVIAVKNLNSNNTK-----VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY 194 (342)
T ss_dssp EE---CHHHHTTBCEEEEESCSSSSS-----SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSS
T ss_pred EE---cccccccccccccCCeeeEEe-----eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCC
Confidence 23 3333 33211111 01112234565332 55557789999999998 43 23333355
Q ss_pred ceeeEEEcC--CEEEEEEecCCCeeeEEEEEeecC------ceeeeeeeccc---------cCCcchhhhhccceeEEEe
Q 020609 235 NVQEIKISP--GIMLLIFTKASGHVPLKILSIEDG------TVLKSFNHLLH---------RNKKVDFIEQFNEKLLVKQ 297 (323)
Q Consensus 235 ~VqEIkIS~--Gimll~~q~~~~~iPlkIlsIedG------~~l~~~~~~L~---------~sk~iqFiE~f~EkLLIKQ 297 (323)
.+..+.++| |-.++.-.. .+. ++|.++.++ +.+..+...-. .-..+.|-. -+.+|+.--
T Consensus 195 ~i~~i~~~~~~~~~l~~~~~-dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~ 270 (342)
T 1yfq_A 195 QIRDVALLPKEQEGYACSSI-DGR--VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAG 270 (342)
T ss_dssp CEEEEEECSGGGCEEEEEET-TSE--EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEE
T ss_pred ceeEEEECCCCCCEEEEEec-CCc--EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CCCEEEEec
Confidence 788889986 555444433 333 566677766 55555542100 111233322 245677777
Q ss_pred cCCceeEEeccccceee
Q 020609 298 ENENLQILDESNSGCLE 314 (323)
Q Consensus 298 E~~~LqI~Dl~~~~l~e 314 (323)
++..+++||+.+.++..
T Consensus 271 ~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 271 SDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTSCEEEEETTTTEEEE
T ss_pred CCceEEEEcCccHhHhh
Confidence 89999999999887654
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.59 E-value=0.015 Score=52.40 Aligned_cols=200 Identities=14% Similarity=0.170 Sum_probs=121.6
Q ss_pred ceeEEeec--c-chhhhhhccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 97 KIIEIVAA--R-DIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 97 ~V~EIv~a--~-diI~aL~~sG~c~af~r~tn~~iC~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
+|.-+-.. + .+|++=...|....||..+++..+++.. .+..-|.+|-++..+..++.. ++.| .++++-
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s---~s~D-~~v~iw---- 192 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYA---SSME-GTTRLQ---- 192 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEE---ECSS-SCEEEE----
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEE---EeCC-CEEEEe----
Confidence 35555442 3 3566667789999999999998888764 678889999998765544431 2233 234433
Q ss_pred hhhhhCCCCCCCcceeec-ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCC--EEE
Q 020609 173 EYIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG--IML 247 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~-~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~G--iml 247 (323)
+++.+.. ..+.... .-.|--.+.|+. +|+.++.-..++..++||+++ ..+..+. ...|..+.++|. .++
T Consensus 193 -d~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 193 -DFKGNIL---RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp -ETTSCEE---EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred -eccCCce---eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEE
Confidence 2221110 1111111 122333467765 456666667899999999976 3444443 466778888742 233
Q ss_pred EEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEecccccee
Q 020609 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+..- ..+. ++|+++.+++....+.....+...|.-+. .-+.+|+.--++..++|||+.+.++.
T Consensus 267 ~s~s-~d~~--v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 267 ATAS-VDQT--VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp EEEE-TTSB--CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred EEec-Ccce--eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence 3322 2222 57889988887766654444455554332 23567888889999999999986643
No 74
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.16 Score=45.72 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=95.1
Q ss_pred eEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhh--hCCCCCCCcceee-cccCCCCeEEecCCCceEEEEecCC
Q 020609 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--RGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQD 214 (323)
Q Consensus 138 vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~--~Gk~~~g~~LFe~-~~L~~PgFVEFDdvN~kilty~aq~ 214 (323)
-|.++=++.....|+.++ ..|. .++.-.+ . .|+. ...+.. ..-..+--+.|+.. |+.++....+
T Consensus 104 ~v~~~~~s~d~~~l~~~~--~~dg--~v~iwd~-----~~~~~~~---~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~~ 170 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACA--DSDK--SLLVFDV-----DKTSKNV---LKLRKRFCFSKRPNAISIAED-DTTVIIADKF 170 (450)
T ss_dssp CEEEEEECTTSSEEEEEE--GGGT--EEEEEEE-----CSSSSSC---EEEEEEEECSSCEEEEEECTT-SSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEE--CCCC--eEEEEEC-----cCCCCce---eeeeecccCCCCceEEEEcCC-CCEEEEEeCC
Confidence 589999998877765422 2232 2333222 2 1221 122221 11233446788764 4555555568
Q ss_pred CeEEEEeccCcEE------EEEecccceeeEEEcC----CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccC---C
Q 020609 215 SIYKVFDLKNYTM------LYSISDKNVQEIKISP----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN---K 281 (323)
Q Consensus 215 ~~YrVfdlknYs~------LYsIsde~VqEIkIS~----Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~s---k 281 (323)
+..++||+.+... .+.-....|..+.++| |-+|+.--. .. -++|.++.+|+.+..+.. .+. .
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~--~h~~~v~ 245 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-DE--HIKISHYPQCFIVDKWLF--GHKHFVS 245 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-TS--CEEEEEESCTTCEEEECC--CCSSCEE
T ss_pred CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-CC--cEEEEECCCCceeeeeec--CCCCceE
Confidence 8999999988764 2333456788899987 444444333 33 368899999998876431 223 3
Q ss_pred cchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 282 KVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 282 ~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
.+.|- -+.+|+.--.+..+++||+.+.++..
T Consensus 246 ~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 246 SICCG--KDYLLLSAGGDDKIFAWDWKTGKNLS 276 (450)
T ss_dssp EEEEC--STTEEEEEESSSEEEEEETTTCCEEE
T ss_pred EEEEC--CCCEEEEEeCCCeEEEEECCCCcEee
Confidence 34554 45677777789999999999987654
No 75
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.42 Score=41.36 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=109.1
Q ss_pred ceeEEeeccchhhhhhccccceeeecccc--cEEEEEeCC-CCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 97 KIIEIVAARDIVFALAQSGVCAAFCRETN--QRICFLNVT-ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 97 ~V~EIv~a~diI~aL~~sG~c~af~r~tn--~~iC~LN~s-~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
+|.-+-+..++++.-...|....||..++ +.+..+... +..-|+++=++....-|++.| .|. .++.-. ++
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s---~D~--~v~iw~--~~ 88 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS---FDS--TVSIWA--KE 88 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE---TTS--CEEEEE--C-
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe---CCC--cEEEEE--cc
Confidence 44444445566666667788999998876 445566554 888899999999877666544 232 233222 11
Q ss_pred hhhhCCCC--CCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEecc----CcEEEEEec--ccceeeEEEc
Q 020609 174 YIRRGKPD--AGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLYSIS--DKNVQEIKIS 242 (323)
Q Consensus 174 ~i~~Gk~~--~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlk----nYs~LYsIs--de~VqEIkIS 242 (323)
.++.. ...++.. --.|.+ -+.|.. +|+.|+-...|+..++||+. .++++..+. ...|..+..+
T Consensus 89 ---~~~~~~~~~~~~~~--~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 89 ---ESADRTFEMDLLAI--IEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp ---------CCCEEEEE--EC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred ---cCcCccccceeEEE--EcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 11100 0111110 012333 345654 57777777789999999994 456666654 3568888887
Q ss_pred C-CEEEEEEecCCCeeeEEEEEeecC--ceeeeeeeccccCCcc---hhhhhc-cceeEEEecCCceeEEecccc
Q 020609 243 P-GIMLLIFTKASGHVPLKILSIEDG--TVLKSFNHLLHRNKKV---DFIEQF-NEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 243 ~-Gimll~~q~~~~~iPlkIlsIedG--~~l~~~~~~L~~sk~i---qFiE~f-~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
| |-+|+.- ...+. ++|.++.++ +.+..+. .+...| .|-..- +..|..==++..+++||+.+.
T Consensus 163 p~~~~l~s~-s~D~~--i~iW~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 163 PSEALLASS-SYDDT--VRIWKDYDDDWECVAVLN---GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SSSSEEEEE-ETTSC--EEEEEEETTEEEEEEEEC---CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCCEEEEE-cCCCe--EEEEECCCCCeeEEEEcc---CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 5 3443332 22222 577777766 4444443 122222 332221 123555568899999999764
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.38 E-value=0.14 Score=49.15 Aligned_cols=198 Identities=14% Similarity=0.176 Sum_probs=118.9
Q ss_pred cceeEEeecc--chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 96 S~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
..|..+.... .+++.-...|....||..+++.+..+.. +..-|.++-++..++.|++.| .+ .+++.- +
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s----~D-~~i~iw--d-- 500 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSAS----RD-RTIKLW--N-- 500 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEE----TT-SCEEEE--C--
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEe----CC-CEEEEE--E--
Confidence 3455555543 3566666778999999999998877754 555688999998888887754 22 122221 1
Q ss_pred hhhhCCCCCCCcceeecccCCCCe---EEecCCC-ceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEE
Q 020609 174 YIRRGKPDAGFALFESESLKWPGF---VEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIM 246 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN-~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gim 246 (323)
+. +. .........-.|.+. +.|.... +..++-...|+..++||+++-+++..+.. ..|..+.++| |-+
T Consensus 501 -~~-~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 501 -TL-GE---CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575 (694)
T ss_dssp -TT-SC---EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred -CC-CC---cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 11 00 000000011123332 4454432 24555567799999999999998877753 4578888885 444
Q ss_pred EEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhc-cceeEEEecCCceeEEeccccceeee
Q 020609 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 247 ll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f-~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
|+.- ...+. ++|.++.+|+.+..+.. ...+.-+.-. +.++|.--.+..++|||+.+.++.+.
T Consensus 576 l~sg-~~Dg~--i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~ 638 (694)
T 3dm0_A 576 CASG-GKDGV--VLLWDLAEGKKLYSLEA----NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVED 638 (694)
T ss_dssp EEEE-ETTSB--CEEEETTTTEEEECCBC----SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEE
T ss_pred EEEE-eCCCe--EEEEECCCCceEEEecC----CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhh
Confidence 3333 22332 68899999998876542 1222111111 34566666677899999999887653
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.36 E-value=0.34 Score=39.86 Aligned_cols=191 Identities=13% Similarity=0.144 Sum_probs=103.3
Q ss_pred hccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCC------CCC-
Q 020609 112 AQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP------DAG- 183 (323)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~------~~g- 183 (323)
+.-|....||..||+.+..+.. .+...|.++-++...+.|++.| .|. .++.-. +..|+. +.+
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs---~Dg--~v~iw~-----~~~~~~~~~~~~h~~~ 111 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---SSA--EVQLWD-----VQQQKRLRNMTSHSAR 111 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---TTS--EEEEEE-----TTTTEEEEEEECCSSC
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE---CCC--cEEEee-----cCCceeEEEecCccce
Confidence 4467788999999998888875 5677899999999888877644 121 111111 010100 000
Q ss_pred --------Cccee-------------------ecccCCCCeEE--ecCCCceEEEEecCCCeEEEEeccCcE------EE
Q 020609 184 --------FALFE-------------------SESLKWPGFVE--FDDVNGKVLTYSAQDSIYKVFDLKNYT------ML 228 (323)
Q Consensus 184 --------~~LFe-------------------~~~L~~PgFVE--FDdvN~kilty~aq~~~YrVfdlknYs------~L 228 (323)
..|.. .....|.+.+. .-..+|+.++....|+..++||+++-+ ..
T Consensus 112 ~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 191 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 191 (318)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE
T ss_pred EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee
Confidence 00000 00111222222 223556667767789999999998643 22
Q ss_pred EEecccceeeEEEcC--CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEe--cCCceeE
Q 020609 229 YSISDKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQI 304 (323)
Q Consensus 229 YsIsde~VqEIkIS~--Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQ--E~~~LqI 304 (323)
..-....|..+..++ +-++.+... ...--++|.++++++......+. ..-..+.|.- .+..+++=- ++..++|
T Consensus 192 ~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~~~~~sg~~d~~i~i 268 (318)
T 4ggc_A 192 FTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELISGHGFAQNQLVI 268 (318)
T ss_dssp ECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCCEEEEEECS-SCEEEEEEET-TTTEEEEEECTTTCCEEE
T ss_pred ecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEecccccccccccce-eeeeeeeecc-cccceEEEEEcCCCEEEE
Confidence 222233455555542 112222211 12223678888888877765532 2122233332 234444433 6789999
Q ss_pred Eeccccceeee
Q 020609 305 LDESNSGCLEL 315 (323)
Q Consensus 305 ~Dl~~~~l~ev 315 (323)
||+.+.++...
T Consensus 269 wd~~~~~~~~~ 279 (318)
T 4ggc_A 269 WKYPTMAKVAE 279 (318)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCcEEEE
Confidence 99998877643
No 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.34 E-value=0.38 Score=48.81 Aligned_cols=197 Identities=9% Similarity=0.170 Sum_probs=123.6
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
...|..+.+. ..++++-...|....||..|++.+..+.. +..-|.++-++...+..+++|. +.+ ..++.-
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~sg--~~d-~~v~vw---- 728 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATG--SND-FFLKLW---- 728 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSCCEEEEE--ETT-SCEEEE----
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEecCCCceEEEEE--eCC-CeEEEE----
Confidence 4556666655 34677777789999999999999998875 4556788888776666555442 333 122222
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc--------------
Q 020609 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-------------- 235 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~-------------- 235 (323)
++..|+ .+..- ..|.+ -+.|.. +|+.++....|+..++||+.+-..+..+....
T Consensus 729 -d~~~~~-----~~~~~--~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1249)
T 3sfz_A 729 -DLNQKE-----CRNTM--FGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 799 (1249)
T ss_dssp -ETTSSS-----EEEEE--CCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCC
T ss_pred -ECCCcc-----hhhee--cCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccc
Confidence 222222 11111 12333 345665 56666667789999999999999888775432
Q ss_pred -eeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccc
Q 020609 236 -VQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 236 -VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
+.-+.++ +|-.++... .+ .+.++++.+|+.+..+.. .+...+..+. .-+..+++--.+..+++||+.+..
T Consensus 800 ~v~~~~~s~dg~~l~~~~--~~--~v~~~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 800 IVKCCSWSADGDKIIVAA--KN--KVLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 873 (1249)
T ss_dssp CBCCCCBCTTSSEEEEEE--TT--EEEEEETTTCCEEEEEEC--SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE
T ss_pred eEEEEEECCCCCEEEEEc--CC--cEEEEEecCCCceeEEcC--CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 3333444 444444443 22 467899999998887652 2233333222 235678888899999999998876
Q ss_pred eee
Q 020609 312 CLE 314 (323)
Q Consensus 312 l~e 314 (323)
...
T Consensus 874 ~~~ 876 (1249)
T 3sfz_A 874 KVA 876 (1249)
T ss_dssp EEE
T ss_pred eee
Confidence 554
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.33 E-value=0.14 Score=42.77 Aligned_cols=178 Identities=6% Similarity=0.007 Sum_probs=108.5
Q ss_pred chhhhhhccccceeeeccccc----EEEEEeCCCCceEEEEEeecCCC-eEEEEEeEecCCCceeeeeeeehhhh-hhCC
Q 020609 106 DIVFALAQSGVCAAFCRETNQ----RICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYI-RRGK 179 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~----~iC~LN~s~dEvIrSiFyNk~Nd-SlItvSvy~sd~fS~LkCr~~~i~~i-~~Gk 179 (323)
.++++-...|....|+..+++ ..... .+..-|.++-++.... .|++.+ .|. .++. . ++ ..++
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~---~dg--~i~~--w---d~~~~~~ 91 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGT---VQG--EILK--V---DLIGSPS 91 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEE---TTS--CEEE--E---CSSSSSS
T ss_pred CEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEc---CCC--eEEE--E---EeccCCc
Confidence 456666677999999998888 55544 5677899999998766 565533 222 2222 2 22 2222
Q ss_pred CCCCCcceeecccC--CCC---eEEecCCCceEEEEecCCCeEEEEeccC---------cEEEEEe-cccceeeEEEcCC
Q 020609 180 PDAGFALFESESLK--WPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSI-SDKNVQEIKISPG 244 (323)
Q Consensus 180 ~~~g~~LFe~~~L~--~Pg---FVEFDdvN~kilty~aq~~~YrVfdlkn---------Ys~LYsI-sde~VqEIkIS~G 244 (323)
. ...-. |.+ -+.|.. +..++....++..++||+++ .+++..+ ....+..+.++|.
T Consensus 92 ~--------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 92 F--------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp E--------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred e--------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 1 11111 333 457777 55666677899999999998 5544443 3456788888887
Q ss_pred EEEEEEecCCCeeeEEEEEeec-CceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEecccc
Q 020609 245 IMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 245 imll~~q~~~~~iPlkIlsIed-G~~l~~~~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
.+ +.-.. .+ -++++++.+ ++....... .+.... +.|...-+..|++--++..+.+||+...
T Consensus 162 ~l-~~~~~-d~--~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 162 RL-IVGMN-NS--QVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EE-EEEES-TT--EEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred cE-EEEeC-CC--eEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 73 33222 22 367889988 765322221 122222 3333213567888889999999999775
No 80
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.30 E-value=0.065 Score=51.60 Aligned_cols=206 Identities=12% Similarity=0.164 Sum_probs=121.5
Q ss_pred ceeEEeec---cchhhhhhccccceeeecccccEEE--EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeee
Q 020609 97 KIIEIVAA---RDIVFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 97 ~V~EIv~a---~diI~aL~~sG~c~af~r~tn~~iC--~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (323)
.|..|++. ..+++.+...|.-..+|..+++.+- .+. ...-++++.+....+-+++ +... ++ +.+.+
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~v-a~~~-~~----~v~v~- 351 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMT-AANN-SN----KVAVI- 351 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEE-EEGG-GT----EEEEE-
T ss_pred ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEE-EecC-CC----eEEEE-
Confidence 46666665 3466677777777888877665443 333 2345677777776655544 2222 22 12223
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCe-EEe-cCCCceEEEEec-CCCeEEEEeccC-------cEEEEEecc--cceeeE
Q 020609 172 IEYIRRGKPDAGFALFESESLKWPGF-VEF-DDVNGKVLTYSA-QDSIYKVFDLKN-------YTMLYSISD--KNVQEI 239 (323)
Q Consensus 172 i~~i~~Gk~~~g~~LFe~~~L~~PgF-VEF-DdvN~kilty~a-q~~~YrVfdlkn-------Ys~LYsIsd--e~VqEI 239 (323)
+...|++ ...++....-|||. +-| +...|.+++-.. .+++.+|||+.+ ++++-.|+. ..+..|
T Consensus 352 --D~~tg~l---~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v 426 (543)
T 1nir_A 352 --DSKDRRL---SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI 426 (543)
T ss_dssp --ETTTTEE---EEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred --ECCCCeE---EEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE
Confidence 3333442 22334444457753 233 444577765443 579999999998 888888875 346778
Q ss_pred EEcC-CEEEEEEecCCC----eeeEEEEEeecCceeeeeeec-------cccCCcchhhhh--ccceeEEE---e--cCC
Q 020609 240 KISP-GIMLLIFTKASG----HVPLKILSIEDGTVLKSFNHL-------LHRNKKVDFIEQ--FNEKLLVK---Q--ENE 300 (323)
Q Consensus 240 kIS~-Gimll~~q~~~~----~iPlkIlsIedG~~l~~~~~~-------L~~sk~iqFiE~--f~EkLLIK---Q--E~~ 300 (323)
+++| |-.|..-.+-+. -=.+.+++++|++.+...... -+....++ +|- =+..|++- + +++
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~g~~~~~s~~~~~~~~~ 505 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ-PEYNKRGDEVWFSVWNGKNDSS 505 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE-EEECSSSSEEEEEEECCTTSCC
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEe-ccCCCCCCEEEEEeecCCCCCC
Confidence 8874 445555443111 225689999999987433100 01122222 232 26778864 2 468
Q ss_pred ceeEEeccccceeeecc
Q 020609 301 NLQILDESNSGCLELSR 317 (323)
Q Consensus 301 ~LqI~Dl~~~~l~ev~~ 317 (323)
.|.|||..+.++..+-+
T Consensus 506 ~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 506 ALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEEETTTTEEEEEEC
T ss_pred eEEEEECCCceEEEeec
Confidence 99999999999988866
No 81
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.29 E-value=0.41 Score=40.16 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=113.8
Q ss_pred cceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCC
Q 020609 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (323)
Q Consensus 116 ~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~P 195 (323)
....||..+++.+..+.... -.+++-++...+.|++.+ . .++ ..+....+. ..|++-... .-....-..|
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~-~-~~~-~~i~~~~~~----~~g~~~~~~-~~~~~~~~~~ 178 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILID-R-SSA-NTVRRFKID----ADGVLFDTG-QEFISGGTRP 178 (331)
T ss_dssp EEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEE-E-TTT-TEEEEEEEC----TTCCEEEEE-EEEECSSSSE
T ss_pred cEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEe-c-CCC-ceEEEEEEC----CCCcEeecC-CccccCCCCc
Confidence 77888988888877776533 347888888777665533 1 112 113332221 111110000 0000122457
Q ss_pred CeEEecCCCceEEEEecCCCeEEEEeccCcEE---EEEecc-cceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCce-
Q 020609 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV- 269 (323)
Q Consensus 196 gFVEFDdvN~kilty~aq~~~YrVfdlknYs~---LYsIsd-e~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~- 269 (323)
--+.|+.-...+++.+..++..++||+++-+. +..+.. ..+..+.++ +|-.|++.....+. +.++++++|+.
T Consensus 179 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~--i~~~d~~~~~~~ 256 (331)
T 3u4y_A 179 FNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD--VFNFNQLSGTLS 256 (331)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE--EEEEETTTTEEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCE--EEEEECCCCcee
Confidence 77888876556777777899999999998887 777754 456778888 46655555554444 66799999988
Q ss_pred -eeeeeec--cccCC-----cchhhhhccceeEEEec-CCceeEEeccccceeeeccc
Q 020609 270 -LKSFNHL--LHRNK-----KVDFIEQFNEKLLVKQE-NENLQILDESNSGCLELSRR 318 (323)
Q Consensus 270 -l~~~~~~--L~~sk-----~iqFiE~f~EkLLIKQE-~~~LqI~Dl~~~~l~ev~~~ 318 (323)
+..+..- ++... .+.| -.=+.+|++--. +..+.|||+.+..+..+.-.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 313 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMAL-NKTETKLFISANISRELKVFTISGKVVGYVAGI 313 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEE-CTTSSEEEEEETTTTEEEEEETTSCEEEECTTC
T ss_pred eecccccccccCCCCcccccceEE-CCCCCEEEEecCCCCcEEEEEecCCcccceecc
Confidence 4444321 11110 0121 123567877654 56899999999887766543
No 82
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.28 E-value=0.095 Score=43.64 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=75.3
Q ss_pred eEEecCCC--ceEEEEecCCCeEEEEeccC--cEE--EEEecccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCce
Q 020609 197 FVEFDDVN--GKVLTYSAQDSIYKVFDLKN--YTM--LYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTV 269 (323)
Q Consensus 197 FVEFDdvN--~kilty~aq~~~YrVfdlkn--Ys~--LYsIsde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~ 269 (323)
-+.|...+ |+.++....++..++||+.+ ... .+.-....|..+.++| |-+|+.-.. .+ -+.|.++++++.
T Consensus 44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~ 120 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC-DK--TAKMWDLSSNQA 120 (368)
T ss_dssp EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TS--EEEEEETTTTEE
T ss_pred EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC-CC--cEEEEEcCCCCc
Confidence 35666665 88888888999999999996 332 2333467789999984 444444332 22 468899999998
Q ss_pred eeeeeeccccCCcchhhh----hccceeEEEecCCceeEEeccccceee
Q 020609 270 LKSFNHLLHRNKKVDFIE----QFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 270 l~~~~~~L~~sk~iqFiE----~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
+....| ..++.-+. .-+..|+.=-.+..+++||+.+.++..
T Consensus 121 ~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 121 IQIAQH----DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEEEEC----SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred eeeccc----cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence 774432 34443333 223457777789999999999876543
No 83
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.25 E-value=0.41 Score=39.80 Aligned_cols=193 Identities=8% Similarity=0.022 Sum_probs=109.3
Q ss_pred ccceeEEeecc-----chhhhhhccccceeeeccc-ccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeee
Q 020609 95 RSKIIEIVAAR-----DIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (323)
Q Consensus 95 RS~V~EIv~a~-----diI~aL~~sG~c~af~r~t-n~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr 168 (323)
...|.-+-... .++++-...|....||..+ ++.+...-..+..-|.++-++...+.|++.| .|. .++.-
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg--~v~iw 113 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS---CDK--TAKMW 113 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE---TTS--EEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc---CCC--cEEEE
Confidence 45566666654 4677777789999999988 6666344445677789999999777666543 232 23322
Q ss_pred eeehhhhhhCCCCCCCcceeecccCCCC---eEEec-CCCceEEEEecCCCeEEEEeccCcEEEEEeccc-ceeeEEEcC
Q 020609 169 STRIEYIRRGKPDAGFALFESESLKWPG---FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISP 243 (323)
Q Consensus 169 ~~~i~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFD-dvN~kilty~aq~~~YrVfdlknYs~LYsIsde-~VqEIkIS~ 243 (323)
++..++ .+.. ..+++ -+.|. ..+++.++....++..++||+++.+.+..+... .+..+...+
T Consensus 114 -----d~~~~~-----~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 114 -----DLSSNQ-----AIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp -----ETTTTE-----EEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred -----EcCCCC-----ceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 222222 1111 12333 34552 567787877888999999999988866655532 333444444
Q ss_pred CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhh------ccceeEEEecCCceeEEecccc
Q 020609 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ------FNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~------f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
..+++..... -+.++++.++......... +.......+-. ....++.--.+..++|||+.+.
T Consensus 181 ~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 181 PMAVVATAER----GLIVYQLENQPSEFRRIES-PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp TEEEEEEGGG----CEEEEECSSSCEEEEECCC-SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred CeeEEEeCCC----cEEEEEeccccchhhhccc-cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 4333222211 2455666554433221110 00111111111 1122788889999999999876
No 84
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.25 E-value=0.29 Score=43.25 Aligned_cols=203 Identities=9% Similarity=0.167 Sum_probs=114.8
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
..+|.-+-.. ...++.-...|....||..+++.+..+...... |.++-|+.....|++.| .+ -.|+.-++
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~las~~----~d---~~v~iw~~ 137 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-VMECAFAPNGQSVACGG----LD---SACSIFNL 137 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-CCCCEECTTSSEEEECC----SS---SCCEEEEC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-EEEEEECCCCCEEEEee----CC---CcEEEEEC
Confidence 3455555554 346666777899999999999998888765444 56677777776665532 22 12333322
Q ss_pred hhhhhCCCCCC-CcceeecccCCCCeE---EecCCCceEEEEecCCCeEEEEeccCcEEEEEec-------ccceeeEEE
Q 020609 173 EYIRRGKPDAG-FALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKNVQEIKI 241 (323)
Q Consensus 173 ~~i~~Gk~~~g-~~LFe~~~L~~PgFV---EFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs-------de~VqEIkI 241 (323)
.. +....+ .++ ....-.|.|+| .|...++..++-...|+..++||+.+-+.+..+. ...|..+.+
T Consensus 138 ~~---~~~~~~~~~~-~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 138 SS---QADRDGNMPV-SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp CC---CSSCCCSSTT-CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred CC---CccccCCccc-eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 21 110011 111 11112233333 3444444444445679999999999988776652 234556666
Q ss_pred c--CCEEEEEEecCCCeeeEEEEEee-cCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEeccccceeee
Q 020609 242 S--PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 242 S--~Gimll~~q~~~~~iPlkIlsIe-dG~~l~~~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
+ ++-+++.--. .+ -++|.++. +++.+..+. .+...|.-+.- -+.+|+.=-++..+++||+++.+...+
T Consensus 214 ~~~~~~~l~sgs~-D~--~v~~wd~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 214 NSLNANMFISGSC-DT--TVRLWDLRITSRAVRTYH---GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp CSSSCCEEEEEET-TS--CEEEEETTTTCCCCEEEC---CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred ecCCCCEEEEEEC-CC--eEEEEECCCCCcceEEEC---CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 4 3444333222 22 25778887 445554443 12333322221 245677777999999999998876554
No 85
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.06 E-value=0.09 Score=46.77 Aligned_cols=112 Identities=15% Similarity=0.270 Sum_probs=76.0
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
+.|.. +|+.++....|+..++||+.+.+.+..+. ...|..+.++| |-.|+.- ..... ++|.++.+|+.+..+.
T Consensus 129 v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~--v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 129 VCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG-SGDRT--VRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSE--EEEEETTTTEEEEEEE
T ss_pred EEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEe-cCCCc--EEEEECCCCeeEEEEE
Confidence 56655 56777777789999999999999887775 45688888874 4443332 22333 6889999999887665
Q ss_pred eccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 275 ~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
+. ..-.-+.|--.-+.+|+.=-.+..+++||+.+.++.+
T Consensus 205 ~~-~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~ 243 (393)
T 1erj_A 205 IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243 (393)
T ss_dssp CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred cC-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 31 1111222222235577777889999999999877654
No 86
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.05 E-value=0.057 Score=48.56 Aligned_cols=186 Identities=12% Similarity=0.155 Sum_probs=95.4
Q ss_pred hhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceee
Q 020609 110 ALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES 189 (323)
Q Consensus 110 aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~ 189 (323)
+-...|....||.. ++.+..+. .+..-|.++=++..++.++.+ ...|. . +.+=+++.++...... .
T Consensus 226 ~g~~dg~i~~wd~~-~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s--~s~d~--~-----v~iwd~~~~~~~~~~~--~- 291 (435)
T 4e54_B 226 TGDNVGNVILLNMD-GKELWNLR-MHKKKVTHVALNPCCDWFLAT--ASVDQ--T-----VKIWDLRQVRGKASFL--Y- 291 (435)
T ss_dssp EECSSSBEEEEESS-SCBCCCSB-CCSSCEEEEEECTTCSSEEEE--EETTS--B-----CCEEETTTCCSSSCCS--B-
T ss_pred EEeCCCcEeeeccC-cceeEEEe-cccceEEeeeecCCCceEEEE--ecCcc--e-----eeEEecccccccceEE--E-
Confidence 33344555556553 33232232 345568888888877766652 22333 1 2222344433211111 0
Q ss_pred cccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccccee------eEEE--c-CCEEEEEE-ecCCCe
Q 020609 190 ESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQ------EIKI--S-PGIMLLIF-TKASGH 256 (323)
Q Consensus 190 ~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~Vq------EIkI--S-~Gimll~~-q~~~~~ 256 (323)
...|.+ -+.|+. +|+.|+-...|+..+|||+.+..++..+....-+ -++. + ++-++++. .+....
T Consensus 292 -~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 292 -SLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp -CCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred -eeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 011222 234554 5666766778999999999999877776432211 1111 1 22222222 221111
Q ss_pred --------eeEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEecccccee
Q 020609 257 --------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 257 --------iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
=.++|+++++|+.+..+.. ++...|--+-.| ..++|+==.+..++|||+.+.+.+
T Consensus 370 ~~~~~~~~~~i~iwd~~~g~~~~~l~~--~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 370 KSCTPYELRTIDVFDGNSGKMMCQLYD--PESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp CCSSTTCCCCEEEECSSSCCEEEEECC--SSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEeC--CCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 1478999999999887642 334443322222 234566566789999999887654
No 87
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.03 E-value=0.6 Score=41.57 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=67.2
Q ss_pred EEecCCCceEEEE-e-cCCCeEEEEeccCcEEEEEeccc-ceeeEEEc-CCEEEEEEec-CCCeeeEEEEEeecCceeee
Q 020609 198 VEFDDVNGKVLTY-S-AQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTK-ASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 198 VEFDdvN~kilty-~-aq~~~YrVfdlknYs~LYsIsde-~VqEIkIS-~Gimll~~q~-~~~~iPlkIlsIedG~~l~~ 272 (323)
+.|+...+.+++- . ..|++.++||+.+-.++..+... .+..+..+ ++-.++..-. ..+ -++|+++.+|+.+..
T Consensus 282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~--~I~iwd~~~~~~v~~ 359 (420)
T 4gga_A 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN--QLVIWKYPTMAKVAE 359 (420)
T ss_dssp EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTC--CEEEEETTTCCEEEE
T ss_pred eeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCC--EEEEEECCCCcEEEE
Confidence 4566666666543 2 36899999999999988877632 22222222 2222222221 222 268899999999988
Q ss_pred eeeccccCCcchhhhhc--cceeEEEecCCceeEEecccc
Q 020609 273 FNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 273 ~~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
+. .+...|--+... +.+|+-==+|+.++|||+...
T Consensus 360 l~---gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 360 LK---GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EC---CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred Ec---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 76 224555434322 445666668999999999764
No 88
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.01 E-value=0.33 Score=46.62 Aligned_cols=195 Identities=13% Similarity=0.213 Sum_probs=112.4
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEe--CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeee
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN--VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN--~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~ 170 (323)
...|..+-.. ...++.-...|....||..+........ ..+...|.++-++.....-.++| ++.+ .+++.-
T Consensus 472 ~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~d-~~v~vw-- 546 (694)
T 3dm0_A 472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS--ASWD-KTVKVW-- 546 (694)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE--EETT-SCEEEE--
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE--EeCC-CeEEEE--
Confidence 3455555554 3456666677888888875443322222 24566788988887653322222 2222 222222
Q ss_pred ehhhhhhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-ceeeEEEcCCEE
Q 020609 171 RIEYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIM 246 (323)
Q Consensus 171 ~i~~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde-~VqEIkIS~Gim 246 (323)
+++.+++ . ...-.|.+. +.|+. +|+.++-...|+..++||+.+-+.++++... .+..+.++|.-.
T Consensus 547 ---d~~~~~~-----~--~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 547 ---NLSNCKL-----R--STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY 615 (694)
T ss_dssp ---ETTTCCE-----E--EEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred ---ECCCCcE-----E--EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 2332221 1 111124443 45655 5677777778999999999999999988644 467777885433
Q ss_pred EEEEecCCCeeeEEEEEeecCceeeeeeeccccCC-------------------cchhhhhccceeEEEecCCceeEEec
Q 020609 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK-------------------KVDFIEQFNEKLLVKQENENLQILDE 307 (323)
Q Consensus 247 ll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk-------------------~iqFiE~f~EkLLIKQE~~~LqI~Dl 307 (323)
++..-..+. ++|.++++++.+..+...+.... .+.| -.-+.+|+.==++..++|||+
T Consensus 616 ~l~~~~~~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 616 WLCAATEHG---IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW-SADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp EEEEEETTE---EEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE-CTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEEcCCC---EEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE-cCCCCEEEEEcCCCeEEEEec
Confidence 333322222 89999999999987763221100 1111 122566777778999999998
Q ss_pred cc
Q 020609 308 SN 309 (323)
Q Consensus 308 ~~ 309 (323)
..
T Consensus 692 ~~ 693 (694)
T 3dm0_A 692 GR 693 (694)
T ss_dssp --
T ss_pred cC
Confidence 63
No 89
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.32 Score=49.85 Aligned_cols=191 Identities=15% Similarity=0.195 Sum_probs=117.1
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020609 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (323)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~ 174 (323)
.|.-+-+. ..++++-...|....|+..+++.+..+. ...-|.+|-++. +..|+++| .|. .++. =+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~~L~S~s---~D~--~v~l-----Wd 85 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GIYLVVIN---AKD--TVYV-----LS 85 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TTEEEEEE---TTC--EEEE-----EE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CCEEEEEE---CcC--eEEE-----EE
Confidence 44444433 2355666677889999998887665543 466799999998 55455543 232 2332 23
Q ss_pred hhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEE-EEec------------ccceee
Q 020609 175 IRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS------------DKNVQE 238 (323)
Q Consensus 175 i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~L-YsIs------------de~VqE 238 (323)
+..|+. +.+ +.+++ -+.|+. +|+.++--..++..++||+++-.+. |.+. ...|..
T Consensus 86 ~~~~~~-----~~~---~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 86 LYSQKV-----LTT---VFVPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp TTTCSE-----EEE---EECSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred CCCCcE-----EEE---EcCCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 333332 211 12444 356765 4555555567999999999998864 5541 235778
Q ss_pred EEEcCC--EEEEEEecCCCeeeEEEEEeecCceeeeeeeccc---------------cCC---cchhhhhccceeEEEec
Q 020609 239 IKISPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH---------------RNK---KVDFIEQFNEKLLVKQE 298 (323)
Q Consensus 239 IkIS~G--imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~---------------~sk---~iqFiE~f~EkLLIKQE 298 (323)
+.++|. -.++.- -..++ + |.++.+++.+..+..-++ +.. .+.|-. -+.+|..=-+
T Consensus 157 l~~sp~~~~~l~~g-~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~ 231 (902)
T 2oaj_A 157 IQWNPRDIGTVLIS-YEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHE 231 (902)
T ss_dssp EEEETTEEEEEEEE-CSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEET
T ss_pred EEEccCCCCEEEEE-eCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEEC
Confidence 888873 333332 33444 4 899999999887763211 011 223322 2556777779
Q ss_pred CCceeEEeccccceee
Q 020609 299 NENLQILDESNSGCLE 314 (323)
Q Consensus 299 ~~~LqI~Dl~~~~l~e 314 (323)
+..+++||+.+.++..
T Consensus 232 Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIM 247 (902)
T ss_dssp TCCEEEEETTTCCEEE
T ss_pred CCeEEEEECCCCcEEE
Confidence 9999999999887754
No 90
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.81 E-value=0.8 Score=40.25 Aligned_cols=175 Identities=12% Similarity=0.188 Sum_probs=102.8
Q ss_pred hhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCC--CeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN--DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~N--dSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
.++.-...|.+..||..+++.+..+.... .-|.++-++... +.|++.| .|. ..+. =+++.|+.
T Consensus 168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs---~Dg----~v~~---wd~~~~~~---- 232 (354)
T 2pbi_B 168 QILTASGDGTCALWDVESGQLLQSFHGHG-ADVLCLDLAPSETGNTFVSGG---CDK----KAMV---WDMRSGQC---- 232 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECCCSSCCEEEEEE---TTS----CEEE---EETTTCCE----
T ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEEeCCCCCEEEEEe---CCC----eEEE---EECCCCcE----
Confidence 45566677899999999999888887544 445666665543 3444322 232 1222 23333332
Q ss_pred cceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc----ceeeEEEcC-CEEEEEEecCCCe
Q 020609 185 ALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKISP-GIMLLIFTKASGH 256 (323)
Q Consensus 185 ~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde----~VqEIkIS~-Gimll~~q~~~~~ 256 (323)
+..- -.|++ -+.|.. +|..++-...|+..|+||+++...+.....+ .+..+.++| |-+|+.--.. +
T Consensus 233 -~~~~--~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-~- 306 (354)
T 2pbi_B 233 -VQAF--ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-Y- 306 (354)
T ss_dssp -EEEE--CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-S-
T ss_pred -EEEe--cCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-C-
Confidence 1110 11333 345655 4555555678999999999998877666544 345666763 4444433322 2
Q ss_pred eeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEe
Q 020609 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILD 306 (323)
Q Consensus 257 iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~D 306 (323)
-++|.++.+|+.+..+. .+...|-=+. .-+.+|+.==.+..++|||
T Consensus 307 -~i~vwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 307 -TINVWDVLKGSRVSILF---GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -CEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -cEEEEECCCCceEEEEE---CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 36889999999887654 2233332121 1245666667888888886
No 91
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.81 E-value=0.52 Score=39.02 Aligned_cols=185 Identities=10% Similarity=0.035 Sum_probs=104.1
Q ss_pred hccccceeeecc-cccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeec
Q 020609 112 AQSGVCAAFCRE-TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE 190 (323)
Q Consensus 112 ~~sG~c~af~r~-tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~ 190 (323)
...|...+|+.. +++....--.....-+.++-++...+.|++++ .++ ..++...+.. ..|++ ..+-.-.
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~---~~~-~~v~~~~~~~---~~~~~---~~~~~~~ 81 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGV---RPE-FRVLAYRIAP---DDGAL---TFAAESA 81 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEE---TTT-TEEEEEEECT---TTCCE---EEEEEEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEee---cCC-CeEEEEEecC---CCCce---eeccccc
Confidence 456777788763 44333222122344566677777666665533 121 2343333321 01111 1111111
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEec---cCcEEEEEecc-cceeeEEEcC-CEEEEEEecCCCeeeEEEEEee
Q 020609 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL---KNYTMLYSISD-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 191 ~L~~PgFVEFDdvN~kilty~aq~~~YrVfdl---knYs~LYsIsd-e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIe 265 (323)
.-..|..+.|+.-...+++.+..++...+||+ +....+-.+.. ..+..+.++| |-.+++.....+. +.++++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~ 159 (343)
T 1ri6_A 82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR--ICLFTVS 159 (343)
T ss_dssp CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE--EEEEEEC
T ss_pred cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCE--EEEEEec
Confidence 12378899998877777777777999999999 66666666653 4578888985 4444555433333 7788998
Q ss_pred c-Cceeeee--eeccccCCc---chhhhhccceeEEEe-cCCceeEEeccc
Q 020609 266 D-GTVLKSF--NHLLHRNKK---VDFIEQFNEKLLVKQ-ENENLQILDESN 309 (323)
Q Consensus 266 d-G~~l~~~--~~~L~~sk~---iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~ 309 (323)
+ |+..... ....+.... +.| -.-+.+|++-. .+..+.+||+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVF-HPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEE-CTTSSEEEEEETTTTEEEEEESSC
T ss_pred CCCceeeecccccccCCCCCcceEEE-CCCCCEEEEEeCCCCEEEEEEecC
Confidence 7 7654322 222222222 222 22355677655 778899999953
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.77 E-value=0.1 Score=44.72 Aligned_cols=183 Identities=11% Similarity=0.131 Sum_probs=103.5
Q ss_pred hhhhhhccccceeeecccc--cEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 107 IVFALAQSGVCAAFCRETN--QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn--~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
+++.-...|....||..++ +.+..+. .+..-|.++-++...+-|++.| .|. . +.+=++..|+.. .
T Consensus 25 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s---~d~--~-----v~vwd~~~~~~~--~ 91 (377)
T 3dwl_C 25 EFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCS---QDR--N-----AYVYEKRPDGTW--K 91 (377)
T ss_dssp EEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEE---TTS--S-----EEEC------CC--C
T ss_pred EEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEe---CCC--e-----EEEEEcCCCCce--e
Confidence 4444557889999999988 4444554 4666789999998877776644 232 2 222233333300 0
Q ss_pred cceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcE---EEEEec---ccceeeEEEcC-CEEEEEEecCC
Q 020609 185 ALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS---DKNVQEIKISP-GIMLLIFTKAS 254 (323)
Q Consensus 185 ~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs---~LYsIs---de~VqEIkIS~-Gimll~~q~~~ 254 (323)
+... ...|.+ -+.|.. +|+.++....++..++||+.+-+ ++..+. ...|..+.++| |-+|+.--..
T Consensus 92 ~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d- 167 (377)
T 3dwl_C 92 QTLV--LLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD- 167 (377)
T ss_dssp CEEE--CCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-
T ss_pred eeeE--ecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-
Confidence 1111 111222 345655 56677777789999999999876 466664 45688888885 4444433322
Q ss_pred CeeeEEEEEeec------------------CceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccce
Q 020609 255 GHVPLKILSIED------------------GTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 255 ~~iPlkIlsIed------------------G~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
+. ++|+++.+ |+.+..+ .+...+.-+. .-+.+|+.=-++..+++||+.+.+.
T Consensus 168 ~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 168 RK--AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SC--EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred CE--EEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 22 67888853 4444443 2233332222 1245677777899999999998875
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.75 E-value=0.1 Score=46.96 Aligned_cols=200 Identities=14% Similarity=0.110 Sum_probs=115.6
Q ss_pred cccceeEEeecc---chhhhhhccccceeeeccc----------ccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecC
Q 020609 94 KRSKIIEIVAAR---DIVFALAQSGVCAAFCRET----------NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASD 160 (323)
Q Consensus 94 kRS~V~EIv~a~---diI~aL~~sG~c~af~r~t----------n~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd 160 (323)
....|.-+-+.. .++++-...|...+|+..+ .+.+..+..... -|.+|=++..+..++.++ ..|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~--~~d 203 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWNPNLNGYLLSA--SDD 203 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEECTTSTTEEEEE--CTT
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeCCCCCCeEEEE--eCC
Confidence 344555555543 4677777889999999887 566667765444 467777777766444322 223
Q ss_pred CCceeeeeeeehhhhhhCCCCCCCccee--ecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCc---EEEEEe-
Q 020609 161 NFSSLRCRSTRIEYIRRGKPDAGFALFE--SESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSI- 231 (323)
Q Consensus 161 ~fS~LkCr~~~i~~i~~Gk~~~g~~LFe--~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknY---s~LYsI- 231 (323)
. .++..+++. ++.. ..... .....|.+ -+.|...++.+++-...++..++||+++- ..+..+
T Consensus 204 g----~i~vwd~~~---~~~~--~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 204 H----TICLWDINA---TPKE--HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp S----CEEEEETTS---CCBG--GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred C----eEEEEeCCC---CCCC--CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 2 233333322 1100 00100 00112332 36788778889888889999999999976 344444
Q ss_pred -cccceeeEEEcCCE--EEEEEecCCCeeeEEEEEeec-CceeeeeeeccccCCcchhhhhccce-eEEEecCCceeEEe
Q 020609 232 -SDKNVQEIKISPGI--MLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEK-LLVKQENENLQILD 306 (323)
Q Consensus 232 -sde~VqEIkIS~Gi--mll~~q~~~~~iPlkIlsIed-G~~l~~~~~~L~~sk~iqFiE~f~Ek-LLIKQE~~~LqI~D 306 (323)
....|.-|.++|.- +++.-. ..+. ++|+++.+ ++++..+..--..-..+.|-. .++. |+.=-.+..+.|||
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~-~dg~--v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp-~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGS-ADKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWD 350 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEE-TTSE--EEEEETTCTTSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSCCEEEE
T ss_pred cCCCCeEEEEeCCCCCCEEEEEe-CCCe--EEEEeCCCCCCCeEEeecCCCCEEEEEECC-CCCCEEEEEeCCCcEEEEe
Confidence 45668888888632 333332 2333 78889887 555665552111112233322 2344 55556888999999
Q ss_pred ccc
Q 020609 307 ESN 309 (323)
Q Consensus 307 l~~ 309 (323)
+.+
T Consensus 351 ~~~ 353 (430)
T 2xyi_A 351 LSK 353 (430)
T ss_dssp GGG
T ss_pred CCC
Confidence 987
No 94
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.73 E-value=1.1 Score=42.54 Aligned_cols=186 Identities=14% Similarity=0.194 Sum_probs=107.0
Q ss_pred hhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcce
Q 020609 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (323)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LF 187 (323)
++.-..-|....||..+++.+..+. .+..-|.++=|+.....|++.| .|. .+ +.- ++..|+. ...|
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s---~D~--~i--~lw---d~~~g~~---~~~~ 228 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTG---GDG--TI--VLY---NGVDGTK---TGVF 228 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEE---TTS--CE--EEE---ETTTCCE---EEEC
T ss_pred EEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEE---CCC--cE--EEE---ECCCCcE---eeee
Confidence 5555566888899988888777764 5667899999999777666644 232 22 222 2222321 0111
Q ss_pred eeccc---CCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-----ceeeEEEcCCEEEEEEecCCCe
Q 020609 188 ESESL---KWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----NVQEIKISPGIMLLIFTKASGH 256 (323)
Q Consensus 188 e~~~L---~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde-----~VqEIkIS~Gimll~~q~~~~~ 256 (323)
+...+ .|.+- +.|.. +|+.|+-...|+..|+||+.+.+++..+... ....+...+..++.. -. .+
T Consensus 229 ~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~-d~- 304 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI-SA-NG- 304 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE-ET-TC-
T ss_pred ccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE-eC-CC-
Confidence 11111 34443 56765 4555655678999999999999988777532 111222223322221 11 12
Q ss_pred eeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccceeee
Q 020609 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 257 iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
-+++++.++|+.+..+. .+...|.=+. .-+.+|+.=-++..+++||+.+.++..+
T Consensus 305 -~i~~~~~~~~~~~~~~~---gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 305 -FINFVNPELGSIDQVRY---GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp -CEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred -cEEEEeCCCCCcceEEc---CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 24667777776554332 2233332221 1255677777899999999998776554
No 95
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.57 E-value=0.85 Score=37.97 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=102.5
Q ss_pred hccccceeeecccccEEEEEeCCC-----CceEEEEEeecCCCeEEEEEeE---ecCCCc--eeeeeeeehhhhhhCCCC
Q 020609 112 AQSGVCAAFCRETNQRICFLNVTA-----DEVIRSLFYNKNNDSLITVSVY---ASDNFS--SLRCRSTRIEYIRRGKPD 181 (323)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~LN~s~-----dEvIrSiFyNk~NdSlItvSvy---~sd~fS--~LkCr~~~i~~i~~Gk~~ 181 (323)
...|.-..||..|++.+-.+.... ...++++-++...+.|++.+.- ..+.+. .=.....+++. |+.-
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~ 138 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD---GLEA 138 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG---GGGB
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC---cccc
Confidence 456777889998998887776543 2346677788877777765521 011110 01334444333 2221
Q ss_pred CCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc--------------------------
Q 020609 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-------------------------- 235 (323)
Q Consensus 182 ~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~-------------------------- 235 (323)
.....+... ..|.-+.|+. +|++++. ++...+||+++.+.+-.++...
T Consensus 139 ~~~~~~~~~--~~~~~~~~s~-dg~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFPMP--RQVYLMRAAD-DGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEECC--SSCCCEEECT-TSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeeccCC--CcccceeECC-CCcEEEc---cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 112222211 1233334765 4455552 3348899998888776665331
Q ss_pred --------------------------------------------eeeEEEc--CCEEEEEEecCCCeeeEEEEEeecCce
Q 020609 236 --------------------------------------------VQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTV 269 (323)
Q Consensus 236 --------------------------------------------VqEIkIS--~Gimll~~q~~~~~iPlkIlsIedG~~ 269 (323)
+..+.++ +|-.+++. .+ -+.++++.+|+.
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~--~v~~~d~~~~~~ 287 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LN--RLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ES--EEEEEETTTTEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cC--eEEEEECccCeE
Confidence 1112222 23332322 12 478899999998
Q ss_pred eeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 270 l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
+..+..- +.-..+.|- .=+.+|++-..+..+.+||+.+.+++.
T Consensus 288 ~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 288 IKAANLD-HTYYCVAFD-KKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEEEECS-SCCCEEEEC-SSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred EEEEcCC-CCccceEEC-CCCCEEEEecCCCeEEEEeccccceee
Confidence 8876521 111123321 125688998888999999998877553
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.81 Score=45.16 Aligned_cols=201 Identities=9% Similarity=0.086 Sum_probs=117.9
Q ss_pred cccceeEEeec----cchhhhhhccccceeeecccccEEEEEe-CCCCceEEEEEeecC--CCeEEEEEeEecCCCceee
Q 020609 94 KRSKIIEIVAA----RDIVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLR 166 (323)
Q Consensus 94 kRS~V~EIv~a----~diI~aL~~sG~c~af~r~tn~~iC~LN-~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~Lk 166 (323)
...+|.-+-.. ..+++.-...|....||..+++..+... ..+..-|.++-++.. .+.+++.| .|. .
T Consensus 52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs---~dg----~ 124 (753)
T 3jro_A 52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDG----K 124 (753)
T ss_dssp CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTS----E
T ss_pred CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe---CCC----c
Confidence 35567777665 4577777888999999999998444322 346677899988887 55555533 222 2
Q ss_pred eeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCC------------CceEEEEecCCCeEEEEeccCc----EEEEE
Q 020609 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV------------NGKVLTYSAQDSIYKVFDLKNY----TMLYS 230 (323)
Q Consensus 167 Cr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdv------------N~kilty~aq~~~YrVfdlknY----s~LYs 230 (323)
++.. +++.++.. ........-...--+.|+.. +|+.++....++..++||+++- .++..
T Consensus 125 I~vw---dl~~~~~~--~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 125 VSVV---EFKENGTT--SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp EEEE---ECCSSSCC--CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred EEEE---EeecCCCc--ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 2222 22222211 11111111111123456654 6788888889999999999876 44444
Q ss_pred ec--ccceeeEEEcCC----EEEEEEecCCCeeeEEEEEeecCceeeeee--eccccCCc---chhhhhccceeEEEecC
Q 020609 231 IS--DKNVQEIKISPG----IMLLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKK---VDFIEQFNEKLLVKQEN 299 (323)
Q Consensus 231 Is--de~VqEIkIS~G----imll~~q~~~~~iPlkIlsIedG~~l~~~~--~~L~~sk~---iqFiE~f~EkLLIKQE~ 299 (323)
+. ...|..+.++|. -+++.--. .+. ++|.++.+|+...... ....+... +.|- .-+..|+.--.+
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~l~s~s~D 275 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRT--CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-LSGNVLALSGGD 275 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEES-SSC--EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-TTTCCEEEECSS
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEEEec-CCE--EEEecCCCCCCcceeEEeccCCCCCceEEEEEc-CCCCEEEEEcCC
Confidence 44 456888888864 55444333 332 6789999885322111 11112222 2432 235567777788
Q ss_pred CceeEEecccc
Q 020609 300 ENLQILDESNS 310 (323)
Q Consensus 300 ~~LqI~Dl~~~ 310 (323)
..+.+||+.+.
T Consensus 276 g~I~vwd~~~~ 286 (753)
T 3jro_A 276 NKVTLWKENLE 286 (753)
T ss_dssp SCEECCBCCSS
T ss_pred CEEEEEecCCC
Confidence 99999999853
No 97
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.48 E-value=0.86 Score=40.09 Aligned_cols=185 Identities=15% Similarity=0.233 Sum_probs=106.4
Q ss_pred eEEeeccchhh-hhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhh
Q 020609 99 IEIVAARDIVF-ALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (323)
Q Consensus 99 ~EIv~a~diI~-aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~ 177 (323)
.++....+.++ +-...|....||..+++.++.+.. ..-|+++-++. +.+++ + .|+ . .+.- ++..
T Consensus 64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~--~~~v~~v~~~~--~~~~~-~---~~~--~--i~i~---d~~~ 128 (355)
T 3vu4_A 64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV--DAPVKDLFLSR--EFIVV-S---YGD--V--ISVF---KFGN 128 (355)
T ss_dssp EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC--SSCEEEEEECS--SEEEE-E---ETT--E--EEEE---ESST
T ss_pred EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC--CCceEEEEEcC--CEEEE-E---EcC--E--EEEE---ECCC
Confidence 34443344432 233345889999999999998874 34678888875 33333 2 233 2 2222 2222
Q ss_pred C-CCCCCCcceeecccCCCCeEEecCCCceEEEE--ecCCCeEEEEeccCcE------------------EEEEecccce
Q 020609 178 G-KPDAGFALFESESLKWPGFVEFDDVNGKVLTY--SAQDSIYKVFDLKNYT------------------MLYSISDKNV 236 (323)
Q Consensus 178 G-k~~~g~~LFe~~~L~~PgFVEFDdvN~kilty--~aq~~~YrVfdlknYs------------------~LYsIsde~V 236 (323)
+ +.- .-+++ -.|...|.. ..+++ ...++..++||+++-. ..+.-....|
T Consensus 129 ~~~~~---~~~~~----~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 129 PWKRI---TDDIR----FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp TCCBS---SCCEE----EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE
T ss_pred Cceee---EEecc----CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce
Confidence 2 110 01111 123334433 45566 4789999999999854 2233334668
Q ss_pred eeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccc
Q 020609 237 QEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 237 qEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
..+.++| |-+|+.--.... -++|.++.+|+.+..+..-.| ..+|.-+. .-+.+|+.=-++..++|||+.+..
T Consensus 199 ~~~~~s~~g~~l~s~s~d~~--~v~iwd~~~~~~~~~~~~g~h-~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQDGT--IIRVFKTEDGVLVREFRRGLD-RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEECTTSSEEEEEETTCS--EEEEEETTTCCEEEEEECTTC-CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEECCCCCEEEEEeCCCC--EEEEEECCCCcEEEEEEcCCC-CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 8888885 445444333222 168999999999988762112 33332222 235677777899999999998654
No 98
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.48 E-value=0.95 Score=37.89 Aligned_cols=120 Identities=8% Similarity=0.038 Sum_probs=85.5
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc-----------eeeEEEcC-CEEEEEEe-cCCCeeeE
Q 020609 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----------VQEIKISP-GIMLLIFT-KASGHVPL 259 (323)
Q Consensus 193 ~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~-----------VqEIkIS~-Gimll~~q-~~~~~iPl 259 (323)
..|.-+.|+.....+++.+..++...+||+++-+.+-.+.... ...+.++| |-.+++.. ...+. +
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~--i 166 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV--I 166 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE--E
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce--E
Confidence 4577888998777788888888999999999998887776543 67788884 33334433 33333 6
Q ss_pred EEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 260 kIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
.++++.+|+.+..+...-..-..+.| -.-+.+|++--++..+.+||+.+.++...
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~i~~~d~~~~~~~~~ 221 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNTGKMSTGLAL-DSEGKRLYTTNADGELITIDTADNKILSR 221 (353)
T ss_dssp EEEETTTTEEEEEECCCCTTCCCCEE-ETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred EEEcCCCCceEEEecCCCCccceEEE-CCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence 78899999998877621111223332 23467899988899999999998887643
No 99
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.46 E-value=1.1 Score=38.54 Aligned_cols=194 Identities=11% Similarity=0.170 Sum_probs=114.8
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020609 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (323)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~ 174 (323)
.|..+.+. ..+++.-..-|....||..+++.+..+.. +..-|.++-++.....|++.| .+ ..++.- ++
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s----~D-~~i~vw--d~-- 136 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGS----RD-KTIKVW--TI-- 136 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEEEE----TT-SCEEEE--ET--
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEEEe----CC-CeEEEE--EC--
Confidence 44444443 23566666779999999999998877754 455678998888777666643 22 122222 21
Q ss_pred hhhCCCCCCCcceeecccCCCCe---EEecC-----CCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-
Q 020609 175 IRRGKPDAGFALFESESLKWPGF---VEFDD-----VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP- 243 (323)
Q Consensus 175 i~~Gk~~~g~~LFe~~~L~~PgF---VEFDd-----vN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~- 243 (323)
+ |+ .+. ....|.+. +.|.. .++..++-...|+..++||+++++....+. ...|..+.++|
T Consensus 137 -~-~~-----~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 137 -K-GQ-----CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207 (319)
T ss_dssp -T-SC-----EEE--EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT
T ss_pred -C-CC-----eEE--EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC
Confidence 1 11 111 01122222 23322 134456666789999999999999887764 45677888885
Q ss_pred CEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
|-+|+.-- ..+ -++|.++.+++.+..+... ..-..+.|-. +.++|.=-.+..+++||+....+...
T Consensus 208 g~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp--~~~~la~~~~~~i~v~~~~~~~~~~~ 273 (319)
T 3frx_A 208 GTLIASAG-KDG--EIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDD 273 (319)
T ss_dssp SSEEEEEE-TTC--EEEEEETTTTEEEEEEECC-SCEEEEEECS--SSSEEEEEETTEEEEEEETTEEEEEE
T ss_pred CCEEEEEe-CCC--eEEEEECCCCcEEEEecCC-CcEEEEEEcC--CCCEEEEEcCCCcEEEEeCcCeeeec
Confidence 44433332 233 3788999999988876531 1111223322 23445545566799999987765543
No 100
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.30 E-value=1.1 Score=38.11 Aligned_cols=115 Identities=10% Similarity=0.148 Sum_probs=74.3
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEecc---CcEEEEEeccc-----------ceeeEEEc-CCEEEEEEecCCC
Q 020609 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDK-----------NVQEIKIS-PGIMLLIFTKASG 255 (323)
Q Consensus 191 ~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlk---nYs~LYsIsde-----------~VqEIkIS-~Gimll~~q~~~~ 255 (323)
....|..+.|+.-...+.+.+..++..++||+. ..+.+..+... .+..+.++ +|- +++.....+
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC
Confidence 356899999998777788877788999999997 56666666432 36678888 455 445444444
Q ss_pred eeeEEEEEee-cCceeeeeeeccccCCc---chhhhhccceeEEE-ecCCceeEEeccc
Q 020609 256 HVPLKILSIE-DGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVK-QENENLQILDESN 309 (323)
Q Consensus 256 ~iPlkIlsIe-dG~~l~~~~~~L~~sk~---iqFiE~f~EkLLIK-QE~~~LqI~Dl~~ 309 (323)
-+.++++. +|+........++.... +.|- .=+.+|++= ..+..+.+||+..
T Consensus 163 --~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 163 --KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp --EEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEET
T ss_pred --EEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecC
Confidence 46788888 77654322222222222 2321 224457774 5677899999874
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.7 Score=45.58 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=111.4
Q ss_pred chhhhhhccccceeeecc--cccEEEEEeCCCCceEEEEEeecC--CCeEEEEEeEecCCCceeeeeeeehhhhhhCCCC
Q 020609 106 DIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~--tn~~iC~LN~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~ 181 (323)
..++.-...|....||.. +++.+..+. .+...|.++-++.. .+.|++.| .|. .++.-.+ ..|+.
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s---~Dg--~I~vwd~-----~~~~~- 89 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCS---YDG--KVLIWKE-----ENGRW- 89 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEE---TTS--CEEEEEE-----ETTEE-
T ss_pred CeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEe---CCC--eEEEEEC-----CCCcc-
Confidence 456666678999999987 556555554 56677899988766 45555533 232 2333322 21210
Q ss_pred CCCcceeecccCCCC---eEEecCCC-ceEEEEecCCCeEEEEeccCcE----EEEEecccceeeEEEcC----------
Q 020609 182 AGFALFESESLKWPG---FVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT----MLYSISDKNVQEIKISP---------- 243 (323)
Q Consensus 182 ~g~~LFe~~~L~~Pg---FVEFDdvN-~kilty~aq~~~YrVfdlknYs----~LYsIsde~VqEIkIS~---------- 243 (323)
-.....-.|.+ -+.|...+ |..++....++..++||+++-. ..+.-....|..+..+|
T Consensus 90 ----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 90 ----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (753)
T ss_dssp ----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred ----cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence 00011111222 34565553 7777778899999999998762 33334456788888887
Q ss_pred ----CEEEEEEecCCCeeeEEEEEeecCceeeeeee-ccccCCcchhhhhc-----cceeEEEecCCceeEEeccccc
Q 020609 244 ----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRNKKVDFIEQF-----NEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 244 ----Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~-~L~~sk~iqFiE~f-----~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
|-+++.-.... . ++|+++.+++....... +-.+...|--+.-. +..|+.=-.+..+++||+.+.+
T Consensus 166 ~~~d~~~l~sgs~dg-~--I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 166 GTKESRKFVTGGADN-L--VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -CGGGCCEEEEETTS-C--EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred cCCCCCEEEEEECCC-e--EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 45544443332 2 78899988854432221 11234444433322 5677778889999999999863
No 102
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.27 E-value=0.2 Score=43.14 Aligned_cols=193 Identities=11% Similarity=0.204 Sum_probs=109.4
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCC----CeEEEEEeEecCCCceeeee
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN----DSLITVSVYASDNFSSLRCR 168 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~N----dSlItvSvy~sd~fS~LkCr 168 (323)
...|..+-.. ...++.-..-|....||.. ++.+..+. .+...|.++-+.... +...++|.. .|. .+ +
T Consensus 107 ~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~-~d~--~i--~ 179 (319)
T 3frx_A 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAG-NDK--MV--K 179 (319)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC------CCEEEEEE-TTS--CE--E
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEe-CCC--EE--E
Confidence 3455555443 3356666677888899874 66555554 345567777776543 222332221 222 22 2
Q ss_pred eeehhhhhhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcC-
Q 020609 169 STRIEYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISP- 243 (323)
Q Consensus 169 ~~~i~~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~- 243 (323)
.- +++.++. . .....|.+- +.|.. +|+.++-...|+..++||+.+-+.++.++. ..|..+.++|
T Consensus 180 ~w---d~~~~~~-----~--~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 248 (319)
T 3frx_A 180 AW---NLNQFQI-----E--ADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248 (319)
T ss_dssp EE---ETTTTEE-----E--EEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSS
T ss_pred EE---ECCcchh-----h--eeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCC
Confidence 22 2222211 0 111123332 34544 567777677899999999999999998864 4577777775
Q ss_pred CEEEEEEecCCCeeeEEEEEeecCceeeeeeecccc-----CC---cchhhhhccceeEEEecCCceeEEecccc
Q 020609 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR-----NK---KVDFIEQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~-----sk---~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
|.+++... .. -+++++++++..+..+...+.. .. .+.|- .=+.+|+.=-++..++|||+.+.
T Consensus 249 ~~~la~~~-~~---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 249 RYWLAAAT-AT---GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS-ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SSEEEEEE-TT---EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC-TTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCEEEEEc-CC---CcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC-CCCCEEEEeecCceEEEEEEeec
Confidence 33433332 22 2788999888877765421110 00 12221 23567777889999999999764
No 103
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.18 E-value=1.6 Score=41.54 Aligned_cols=193 Identities=11% Similarity=0.133 Sum_probs=117.0
Q ss_pred chhhhhhccccceeeecccccEEE--EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCC
Q 020609 106 DIVFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC--~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g 183 (323)
.+|+.-...|....+|..+++..+ .+. .+..-|.++=++..+..|++++. ..+.+ -+++... .|+..
T Consensus 72 ~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~-~~~~~--~~v~~wd-----~~~~~-- 140 (611)
T 1nr0_A 72 YYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGE-GRERF--GHVFLFD-----TGTSN-- 140 (611)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEEC-CSSCS--EEEEETT-----TCCBC--
T ss_pred cEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEEC-CCCce--eEEEEee-----CCCCc--
Confidence 456666677899999987665443 343 45567899999998877766441 11111 1222211 12210
Q ss_pred CcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEEecCCCeeeEE
Q 020609 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLK 260 (323)
Q Consensus 184 ~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPlk 260 (323)
.. +. ..-...--+.|.......++-...|+..++||+.+.+++..+.. ..|..+.++| |-+|+.--. .+. ++
T Consensus 141 ~~-l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~-D~~--i~ 215 (611)
T 1nr0_A 141 GN-LT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGT--IV 215 (611)
T ss_dssp BC-CC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSC--EE
T ss_pred ce-ec-CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC-CCc--EE
Confidence 00 10 00111224567665554566667899999999999998888763 4588899985 555444333 332 68
Q ss_pred EEEeecCceeeeeeec----cccCCcchhhhh--ccceeEEEecCCceeEEeccccceee
Q 020609 261 ILSIEDGTVLKSFNHL----LHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 261 IlsIedG~~l~~~~~~----L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
|.++.+|+.+..+... ..+...|.-+.- -+.+|+.=-.+..+++||+.+.++..
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 9999999998876310 022333332222 24567777799999999999876643
No 104
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.06 E-value=0.039 Score=47.28 Aligned_cols=110 Identities=12% Similarity=0.146 Sum_probs=64.5
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCc--EEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknY--s~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (323)
+.|.. +|+.++....++..++||+.+- .++..+. ...|..+.++| |-+|+.-.... -++|.++++|+....
T Consensus 17 ~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 17 HAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR---NAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS---SEEEC------CCCC
T ss_pred EEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC---eEEEEEcCCCCceee
Confidence 45555 6777777778999999999987 6666664 46688888885 44444433322 278999999882222
Q ss_pred eeeccccCCcchhhhh--ccceeEEEecCCceeEEeccccc
Q 020609 273 FNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 273 ~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
...+..+...+.-+.- -+.+|+.--.+..+++||+.+.+
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence 2222233444433332 25577888889999999999876
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.03 E-value=1.5 Score=38.94 Aligned_cols=172 Identities=9% Similarity=0.164 Sum_probs=102.2
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccC
Q 020609 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (323)
Q Consensus 114 sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~ 193 (323)
-|....||..|++.+..+... .+ |.+|=++.....|.+. +++ .+ +.. +... +..+.......
T Consensus 156 d~~i~iwd~~~~~~~~~~~~~-~~-V~~v~fspdg~~l~s~----s~~--~~--~~~---~~~~-----~~~~~~~~~~~ 217 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIETR-GE-VKDLHFSTDGKVVAYI----TGS--SL--EVI---STVT-----GSCIARKTDFD 217 (365)
T ss_dssp SCEEEEEETTTTEEEEEEECS-SC-CCEEEECTTSSEEEEE----CSS--CE--EEE---ETTT-----CCEEEEECCCC
T ss_pred CCEEEEeECCCCcEEEEeCCC-Cc-eEEEEEccCCceEEec----cce--eE--EEE---Eecc-----CcceeeeecCC
Confidence 367889999999999888743 33 7899898876665553 243 11 111 1111 22222222222
Q ss_pred CCC---eEEecCCCceEEEEecCCC---eEEEEeccCcEE----EEEecc--cceeeEEEcC-CEEEEEEecCCCeeeEE
Q 020609 194 WPG---FVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTM----LYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLK 260 (323)
Q Consensus 194 ~Pg---FVEFDdvN~kilty~aq~~---~YrVfdlknYs~----LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPlk 260 (323)
+.+ -+.|...+..+++.+...+ ..+.||++.... ...+.. ..|.-+.+|| |-+|+.--.-. -++
T Consensus 218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~---~V~ 294 (365)
T 4h5i_A 218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN---SIA 294 (365)
T ss_dssp TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS---CEE
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC---EEE
Confidence 222 2567666666666655443 688899887653 333432 4577778874 55555443332 268
Q ss_pred EEEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEeccc
Q 020609 261 ILSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDESN 309 (323)
Q Consensus 261 IlsIedG~~l~~~~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (323)
|+++++|+++..+.. -| ... |.|- .=+.+|.-==.|..++||||-.
T Consensus 295 iwd~~~~~~~~~~~~-gH-~~~V~~v~fS-pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 295 LVKLKDLSMSKIFKQ-AH-SFAITEVTIS-PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTTTEEEEEETT-SS-SSCEEEEEEC-TTSCEEEEEETTSEEEEEECCT
T ss_pred EEECCCCcEEEEecC-cc-cCCEEEEEEC-CCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999987631 13 333 3432 1244555566999999999953
No 106
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.94 E-value=0.46 Score=39.62 Aligned_cols=104 Identities=8% Similarity=0.045 Sum_probs=72.9
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEeccc---ceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeeeeeecccc
Q 020609 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (323)
Q Consensus 204 N~kilty~aq~~~YrVfdlknYs~LYsIsde---~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~ 279 (323)
++++++-...++...+||+.+.+.+-.+.-. ....+.++| |-.+++.....+. +.++++++|+.+..+.. +.
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~--i~~~d~~t~~~~~~~~~--~~ 85 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD--IYGIDLDTCKNTFHANL--SS 85 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEES--CC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc--EEEEeCCCCcEEEEEEc--cc
Confidence 6777777788999999999999988777643 478888885 4444555544444 57899999998876652 21
Q ss_pred --------CCcchhhhhccceeEEEecC------------CceeEEeccccce
Q 020609 280 --------NKKVDFIEQFNEKLLVKQEN------------ENLQILDESNSGC 312 (323)
Q Consensus 280 --------sk~iqFiE~f~EkLLIKQE~------------~~LqI~Dl~~~~l 312 (323)
-..+.|- .=+.+|++-.++ ..+.+||+.+.++
T Consensus 86 ~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 86 VPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp STTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred ccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 1233322 236678887754 8999999988443
No 107
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.86 E-value=1.5 Score=36.73 Aligned_cols=188 Identities=12% Similarity=0.105 Sum_probs=107.8
Q ss_pred hhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcce
Q 020609 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (323)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LF 187 (323)
+++-...|.-..||..|++.+-.+....... ++-++...+.+++++. .++ +.+.++ +..|++ +.-
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~--~~~----~i~~~d---~~~~~~----~~~ 77 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV--DTAITSDCSNVVVTSD--FCQ----TLVQIE---TQLEPP----KVV 77 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECCCCEE--EEEECSSSCEEEEEES--TTC----EEEEEE---CSSSSC----EEE
T ss_pred EEEecCCCeEEEEeCcccceeeeEEccCCcc--eEEEcCCCCEEEEEeC--CCC----eEEEEE---CCCCce----eEE
Confidence 3444567888999999999888877554444 8888887776666432 122 223332 222321 123
Q ss_pred eecccCCCCe-EEecCCCceEEEEecCCC--eEEEEeccCcEEEEEecc-cceeeEEEcCC--EEEEEEecCCCeeeEEE
Q 020609 188 ESESLKWPGF-VEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSISD-KNVQEIKISPG--IMLLIFTKASGHVPLKI 261 (323)
Q Consensus 188 e~~~L~~PgF-VEFDdvN~kilty~aq~~--~YrVfdlknYs~LYsIsd-e~VqEIkIS~G--imll~~q~~~~~iPlkI 261 (323)
....-..|-. +-|+.-...+.+.+..++ ...+||+.+.+.+-.+.. .....+.++|. .++......... +.+
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--i~~ 155 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANT--VRR 155 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTE--EEE
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCce--EEE
Confidence 3334456888 899886666664333334 899999999998777653 56788889854 343333332331 345
Q ss_pred EEeecCceeeee-eeccccCCcchhhh--hccceeEEEe-cCCceeEEeccccce
Q 020609 262 LSIEDGTVLKSF-NHLLHRNKKVDFIE--QFNEKLLVKQ-ENENLQILDESNSGC 312 (323)
Q Consensus 262 lsIedG~~l~~~-~~~L~~sk~iqFiE--~f~EkLLIKQ-E~~~LqI~Dl~~~~l 312 (323)
+++.++..+... ...+.....+.-+. .=+.+|++=. .+..+.+||+.+.++
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 555433322221 11112122222121 1244576655 577899999988775
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.82 E-value=1.8 Score=37.60 Aligned_cols=206 Identities=9% Similarity=0.147 Sum_probs=108.9
Q ss_pred ccceeEEeec--cchhhhhhccccceeeeccccc-----------EEEEEeCCC-----------CceEEEEEeecCCC-
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ-----------RICFLNVTA-----------DEVIRSLFYNKNND- 149 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~-----------~iC~LN~s~-----------dEvIrSiFyNk~Nd- 149 (323)
...|.-+-+. .+++++-...|....|+..+++ .+..+.... ++-|.+|=++...+
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 3444444444 2466666678999999998887 466666432 16688888888763
Q ss_pred -eEEEEEeEecCCCceeeeeeeehhhh---------hhCCCCCC-------Ccceee------------cccCCCC---e
Q 020609 150 -SLITVSVYASDNFSSLRCRSTRIEYI---------RRGKPDAG-------FALFES------------ESLKWPG---F 197 (323)
Q Consensus 150 -SlItvSvy~sd~fS~LkCr~~~i~~i---------~~Gk~~~g-------~~LFe~------------~~L~~Pg---F 197 (323)
.|++.| .|. .++.-.+.-... ..|++... .|.+.. ....|.+ -
T Consensus 108 ~~l~s~s---~d~--~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 108 AQFLLST---NDK--TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp SEEEEEE---CSS--CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred ceEEEeC---CCC--eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 444432 233 333332221100 00111000 111100 0112222 4
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEe----------cccceeeEEEcCC--EEEEEEecCCCeeeEEEEEee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----------SDKNVQEIKISPG--IMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI----------sde~VqEIkIS~G--imll~~q~~~~~iPlkIlsIe 265 (323)
+.|.. +|+.++.. .|+..++||+.+-...+.+ ....|..+.++|. -+++.--.. + -++|+++.
T Consensus 183 ~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g--~i~iwd~~ 257 (447)
T 3dw8_B 183 ISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK-G--TIRLCDMR 257 (447)
T ss_dssp EEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT-S--CEEEEETT
T ss_pred EEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC-C--eEEEEECc
Confidence 66776 45555544 7999999999965544442 2345788888864 344443332 2 36889999
Q ss_pred cCce----eeeeeeccc------------cCCcchhhhhccceeEEEecCCceeEEeccc-cce
Q 020609 266 DGTV----LKSFNHLLH------------RNKKVDFIEQFNEKLLVKQENENLQILDESN-SGC 312 (323)
Q Consensus 266 dG~~----l~~~~~~L~------------~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~-~~l 312 (323)
+|+. +..+...-. .-..+.|-. -+.+|+.--+ ..++|||+.+ .++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSC
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccc
Confidence 9986 444442110 111233322 3456666656 9999999987 443
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=94.82 E-value=0.74 Score=41.39 Aligned_cols=189 Identities=13% Similarity=0.139 Sum_probs=107.6
Q ss_pred hhhhhhccccceeeecccccE-------EEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCC
Q 020609 107 IVFALAQSGVCAAFCRETNQR-------ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~-------iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk 179 (323)
++++-...|....|+..++.. ...+ ..+...|.++-++..+..++.+. ..|+ .++.. +++.++
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~--~~dg--~i~i~-----d~~~~~ 265 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSV--ADDQ--KLMIW-----DTRNNN 265 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEE--ETTS--EEEEE-----ETTCSC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEE--eCCC--eEEEE-----ECCCCC
Confidence 666677789999999877322 1222 25666789998888655555421 2222 23322 333332
Q ss_pred CCCCCcceee-cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCc-EEEEEe--cccceeeEEEcCCE--EEEEEecC
Q 020609 180 PDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKNVQEIKISPGI--MLLIFTKA 253 (323)
Q Consensus 180 ~~~g~~LFe~-~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknY-s~LYsI--sde~VqEIkIS~Gi--mll~~q~~ 253 (323)
. ..++..- ..-..+--+.|...+..+++-...++..++||+++. ..+..+ ....|..+.++|.- +++. -..
T Consensus 266 ~--~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s-~~~ 342 (430)
T 2xyi_A 266 T--SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS-SGT 342 (430)
T ss_dssp S--SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE-EET
T ss_pred C--CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE-EeC
Confidence 1 1222221 111223356787766667777778999999999984 445554 45678899998632 3333 333
Q ss_pred CCeeeEEEEEeecC--------------ceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEecccccee
Q 020609 254 SGHVPLKILSIEDG--------------TVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 254 ~~~iPlkIlsIedG--------------~~l~~~~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
.+. ++|+++.+. +.+..+. -| ... +.|-..-.-.|+.=.++..|+|||+.+..+.
T Consensus 343 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 343 DRR--LHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp TSC--CEEEEGGGTTCCCCHHHHHHCCTTEEEECC--CC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred CCc--EEEEeCCCCccccCccccccCCcceEEEcC--CC-CCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 333 677888762 2332221 11 222 2332221115666789999999999776544
No 110
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.73 E-value=2.5 Score=42.92 Aligned_cols=198 Identities=16% Similarity=0.238 Sum_probs=123.0
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
...|.-+-+. ...++.-...|....||..|++.+..+. .+..-|.++=++..++.|++.| .|. .++.-
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~---~d~----~v~vw-- 684 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS---ADK----KVKIW-- 684 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE---TTS----EEEEE--
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEe---CCC----eEEEE--
Confidence 3445555544 3356666677899999999999988887 5666788998888777776644 232 22222
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEecCC-CceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCC-E
Q 020609 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG-I 245 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdv-N~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~G-i 245 (323)
++..|+. +..-. .|++ -+.|... ++.+++-...++..++||+.+-+++..+. ...|..+.++|. -
T Consensus 685 -d~~~~~~-----~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 685 -DSATGKL-----VHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp -ETTTCCE-----EEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred -ECCCCce-----EEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence 3333332 21110 1222 2456443 66777777889999999999999888875 355777788753 3
Q ss_pred EEEEEecCCCeeeEEEEEeecCceeeeeeecc---cc----------CCcchhhhhccceeEEEecCCceeEEeccccce
Q 020609 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLL---HR----------NKKVDFIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~~~~~L---~~----------sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
+++.- ...+ .+++.++.+|+....+...- .. -.-+.|- .-+..+++-. +..+.+||+.+...
T Consensus 757 ~l~s~-s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~-~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 757 LLASC-SADG--TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-ADGDKIIVAA-KNKVLLFDIHTSGL 831 (1249)
T ss_dssp EEEEE-ESSS--EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC-TTSSEEEEEE-TTEEEEEETTTCCE
T ss_pred EEEEE-ECCC--eEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC-CCCCEEEEEc-CCcEEEEEecCCCc
Confidence 33332 2233 37899999999888765211 00 0111211 1245555554 67899999988776
Q ss_pred eee
Q 020609 313 LEL 315 (323)
Q Consensus 313 ~ev 315 (323)
...
T Consensus 832 ~~~ 834 (1249)
T 3sfz_A 832 LAE 834 (1249)
T ss_dssp EEE
T ss_pred eeE
Confidence 543
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.67 Score=39.95 Aligned_cols=123 Identities=11% Similarity=0.194 Sum_probs=75.8
Q ss_pred ceeEEeecc--chhhhhhccccceeeecccccEE-EEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 97 KIIEIVAAR--DIVFALAQSGVCAAFCRETNQRI-CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 97 ~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~i-C~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
.|.-+-... .++++-...|....||..+++.+ ..+...+..-|.+|-++.+...|++.| |+ ..+.-
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~----~~----~v~iw--- 240 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC----DQ----TVVCF--- 240 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE----SS----BEEEE---
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe----CC----eEEEE---
Confidence 344444442 34444578899999999999988 777776788999999999777766644 33 23333
Q ss_pred hhhhCCCCCCCcceeecccCCC-CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q 020609 174 YIRRGKPDAGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe~~~L~~P-gFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYs 230 (323)
+++.++.-.....|+...+.-. --+.|+.....+++.++.++..+||++..-...++
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 241 DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp ETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred EcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 4454443211222221111111 24889886666666666699999999866544343
No 112
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.65 E-value=1.6 Score=36.04 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=36.8
Q ss_pred eEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 258 PlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
.+.++++.+|+.+..+..- +.-..+.|-. =+.+|++-..+..|.+||+.+.+++.
T Consensus 261 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp EEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 4678888899888766521 1122233221 25578888888999999998877553
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=94.61 E-value=0.52 Score=41.48 Aligned_cols=104 Identities=10% Similarity=0.155 Sum_probs=68.3
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc--CCEEEEEEecCCCeeeEEEEEeecCceeeeee
Q 020609 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS--~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
-+.|.. +|+.++... ++.+++||+.+.+.++......+.-+.++ ++.+++.-... . -++|.++.+|+.+..+.
T Consensus 24 ~v~fs~-dg~~la~g~-~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~--~v~iWd~~~~~~~~~~~ 98 (355)
T 3vu4_A 24 DYEFNQ-DQSCLILST-LKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK-E--VVHIWDDVKKQDVSRIK 98 (355)
T ss_dssp EEEECT-TSSEEEEEC-SSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST-T--EEEEEETTTTEEEEEEE
T ss_pred EEEECC-CCCEEEEEc-CCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc-c--EEEEEECCCCcEEEEEE
Confidence 466765 566666444 45689999999998888765544444443 44544433322 2 68999999999998776
Q ss_pred eccccCCcchhhhhccceeEEEecCCceeEEecccc
Q 020609 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 275 ~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
+ ..++.-+....+.+++=. +..++|||+.+.
T Consensus 99 ~----~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~ 129 (355)
T 3vu4_A 99 V----DAPVKDLFLSREFIVVSY-GDVISVFKFGNP 129 (355)
T ss_dssp C----SSCEEEEEECSSEEEEEE-TTEEEEEESSTT
T ss_pred C----CCceEEEEEcCCEEEEEE-cCEEEEEECCCC
Confidence 3 234544554555666654 557999998876
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.33 Score=49.70 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=80.1
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeec
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~ 276 (323)
+.|+. +|+.|+--..|+..++||..+.++++.... ..|..+.++||-.|+.-- ..+ -++|.++++|+.+..+.+.
T Consensus 23 lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s-~D~--~v~lWd~~~~~~~~~~~~~ 98 (902)
T 2oaj_A 23 AAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVIN-AKD--TVYVLSLYSQKVLTTVFVP 98 (902)
T ss_dssp EEEET-TTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEE-TTC--EEEEEETTTCSEEEEEECS
T ss_pred EEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEE-CcC--eEEEEECCCCcEEEEEcCC
Confidence 56765 456777777899999999999998888764 459999999988544433 333 3789999999999877531
Q ss_pred cccCCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 277 L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
..-.-+.|- .-+.+|++=-++..+++||+.+.++.
T Consensus 99 -~~V~~v~~s-p~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 99 -GKITSIDTD-ASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp -SCEEEEECC-TTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred -CCEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCccc
Confidence 111122322 34678888889999999999988774
No 115
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.54 E-value=0.32 Score=42.41 Aligned_cols=199 Identities=10% Similarity=0.138 Sum_probs=120.0
Q ss_pred cceeEEeeccc----hhhhhhccccceeeecccccEEE---------------------------------------EEe
Q 020609 96 SKIIEIVAARD----IVFALAQSGVCAAFCRETNQRIC---------------------------------------FLN 132 (323)
Q Consensus 96 S~V~EIv~a~d----iI~aL~~sG~c~af~r~tn~~iC---------------------------------------~LN 132 (323)
.+|..+....+ .+++-...|....||..+++... .+-
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 45655555532 46666778888999887765421 223
Q ss_pred CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceee------cccCCC---CeEEecCC
Q 020609 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES------ESLKWP---GFVEFDDV 203 (323)
Q Consensus 133 ~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~------~~L~~P---gFVEFDdv 203 (323)
..+..-|.++-++...+.|++ . +|. .++.-. ++.+ ...+.. ..-.|. --+.|+..
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s--~--~d~--~i~iwd-----~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 237 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLS--A--DDL--RINLWH-----LEIT-----DRSFNIVDIKPANMEELTEVITAAEFHPN 237 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEE--E--CSS--EEEEEE-----TTEE-----EEEEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred cCCCcceEEEEEcCCCCEEEE--e--CCC--eEEEEE-----CCCC-----CceeeeeecccccccccCcceEEEEECCC
Confidence 456677889988886654443 2 343 222221 1100 001110 011122 24567766
Q ss_pred CceEEEEecCCCeEEEEeccCcEE----EEEecc--c------------ceeeEEEcC-CEEEEEEecCCCeeeEEEEEe
Q 020609 204 NGKVLTYSAQDSIYKVFDLKNYTM----LYSISD--K------------NVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (323)
Q Consensus 204 N~kilty~aq~~~YrVfdlknYs~----LYsIsd--e------------~VqEIkIS~-Gimll~~q~~~~~iPlkIlsI 264 (323)
++..++....|+..++||+++.+. +-.+.. . .|..+.++| |-+|+.... =-++|+++
T Consensus 238 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~ 313 (447)
T 3dw8_B 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDL 313 (447)
T ss_dssp CTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEET
T ss_pred CCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeC
Confidence 557888888899999999998775 444443 2 788999985 445444333 34689999
Q ss_pred ec-CceeeeeeeccccCC---------------cchhhhhccceeEEEecCCceeEEeccccceeee
Q 020609 265 ED-GTVLKSFNHLLHRNK---------------KVDFIEQFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 265 ed-G~~l~~~~~~L~~sk---------------~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
.+ |+.+..+..--.... .+.|- .-+.+|+.=-++..+++||+.+.++..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s-~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 314 NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN-GSDSVVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC-TTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred CCCccccceeeccccccccccccccccccccceEEEEC-CCCCEEEEeccCCEEEEEEcCCCcceee
Confidence 97 888887762111011 13332 2356787788999999999999887643
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.36 E-value=1.7 Score=35.26 Aligned_cols=180 Identities=14% Similarity=0.158 Sum_probs=103.7
Q ss_pred eeeeccCCCCcccccccccccccceeEEeec----cchhhhhhccccceeeecccc---------cEEEEEeCCCCceEE
Q 020609 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA----RDIVFALAQSGVCAAFCRETN---------QRICFLNVTADEVIR 140 (323)
Q Consensus 74 ~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a----~diI~aL~~sG~c~af~r~tn---------~~iC~LN~s~dEvIr 140 (323)
..||+-...........+-.....|..+-.. ..+++.-...|....||..++ +.+..+.. +..-|.
T Consensus 36 ~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 114 (351)
T 3f3f_A 36 KVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND-SKGSLY 114 (351)
T ss_dssp EEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC-CSSCEE
T ss_pred EEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc-cCCcee
Confidence 4555544332222222222245667776664 457777888899999999887 55666664 455678
Q ss_pred EEEeecC--CCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcc---------eeecccCCCCeEEecCC--CceE
Q 020609 141 SLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL---------FESESLKWPGFVEFDDV--NGKV 207 (323)
Q Consensus 141 SiFyNk~--NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~L---------Fe~~~L~~PgFVEFDdv--N~ki 207 (323)
++-++.. .+.+++.+ .|. .++.- +++.++.-....+ .........--+.|+.. ++..
T Consensus 115 ~~~~~~~~~~~~l~~~~---~dg--~v~iw-----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 184 (351)
T 3f3f_A 115 SVKFAPAHLGLKLACLG---NDG--ILRLY-----DALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK 184 (351)
T ss_dssp EEEECCGGGCSEEEEEE---TTC--EEEEE-----ECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE
T ss_pred EEEEcCCCCCcEEEEec---CCC--cEEEe-----cCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE
Confidence 8888877 55555543 222 22222 3333332211111 00112222334566654 5777
Q ss_pred EEEecCCCeEEEEeccCcEE--EEEec--ccceeeEEEcCC-----EEEEEEecCCCeeeEEEEEeecC
Q 020609 208 LTYSAQDSIYKVFDLKNYTM--LYSIS--DKNVQEIKISPG-----IMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 208 lty~aq~~~YrVfdlknYs~--LYsIs--de~VqEIkIS~G-----imll~~q~~~~~iPlkIlsIedG 267 (323)
++....++...+|+..+... +..+. ...|..+.++|. -+|+.--.. +. ++|.++.++
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d-g~--i~iwd~~~~ 250 (351)
T 3f3f_A 185 LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD-GR--IRIFKITEK 250 (351)
T ss_dssp EEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT-SC--EEEEEEEEC
T ss_pred EEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC-Ce--EEEEeCCCC
Confidence 77788888888888887764 55554 456888999877 454444332 22 677888776
No 117
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=94.26 E-value=2.2 Score=39.52 Aligned_cols=131 Identities=9% Similarity=-0.040 Sum_probs=77.9
Q ss_pred ceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeeccc----CCCCeEEecCCCceEEEEec
Q 020609 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL----KWPGFVEFDDVNGKVLTYSA 212 (323)
Q Consensus 137 EvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L----~~PgFVEFDdvN~kilty~a 212 (323)
.-|.++=++.....|.++...++++ =.++.-+++....|+.....++.....+ ...--+.|...++..++-..
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYG---SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTE---EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CcccEEEEcCCCCEEEEEEeccCCC---ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3488999988766555421123333 2344455544433332222333332222 22335678887788887778
Q ss_pred CCCeEEEEeccCcEEEEEec--ccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeeee
Q 020609 213 QDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 213 q~~~YrVfdlknYs~LYsIs--de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
.|+..++||+++-..+.... ...|..+..+ +|-+|+.-...+ . ++|+++. |+....+.
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg-~--v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG-T--VVQYLPT-LQEKKVIP 230 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS-C--EEEECTT-CCEEEEEC
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC-c--EEEEccC-Cccccccc
Confidence 89999999999987766554 4578888888 455555544333 2 5677776 66555443
No 118
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.90 E-value=2.3 Score=35.15 Aligned_cols=196 Identities=12% Similarity=0.170 Sum_probs=116.1
Q ss_pred ccceeEEeecc--chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
...|.-+.... .+++.-...|....++..++........... .+....+...++.|++.| .|. .++. .
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s---~d~--~~~~--~-- 155 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-DVLSVAFSSDNRQIVSGS---RDK--TIKL--W-- 155 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEECTTSSCEEEEE---TTS--CEEE--E--
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCC-ceeEEEEeecCccceeec---CCC--eEEE--E--
Confidence 34565555543 3566666778888888888877776665444 456667777777776643 222 1111 1
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEecC-CCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CE
Q 020609 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GI 245 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDd-vN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gi 245 (323)
++. ... ........+.+ .+.|.. ....+++....++..++||+++-+++..+. ...|..+.++| |-
T Consensus 156 -d~~-----~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 156 -NTL-----GVC-KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp -CTT-----SCE-EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred -EeC-----CCc-eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC
Confidence 111 000 11111112222 234443 234455556779999999999999888876 34577888875 44
Q ss_pred EEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhh-ccceeEEEecCCceeEEeccccceee
Q 020609 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~-f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
+|+.-- ..+ -++|.++.+++.+..+.. ...+.-+.. -+.+++.=-.+..++|||+.+..+..
T Consensus 229 ~l~s~s-~Dg--~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 229 LCASGG-KDG--QAMLWDLNEGKHLYTLDG----GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp EEEEEE-TTC--EEEEEETTTTEEEEEEEC----SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred EEEEEe-CCC--eEEEEEeccCceeeeecC----CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEE
Confidence 443332 223 367899999998887653 122221111 14567777789999999999876654
No 119
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.80 E-value=0.84 Score=39.69 Aligned_cols=85 Identities=14% Similarity=0.248 Sum_probs=65.2
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec----ccceeeEEEcCCEEEEEEecC----CCeeeEEE
Q 020609 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIKISPGIMLLIFTKA----SGHVPLKI 261 (323)
Q Consensus 190 ~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs----de~VqEIkIS~Gimll~~q~~----~~~iPlkI 261 (323)
..+.+|--+-||.-+|.+...+..++..++||..+=+++-.+. ...+..+.++||+++..-... ..-.-+.+
T Consensus 193 ~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 193 GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence 3678899999999889999999999999999998667777774 345677888898775553211 11125788
Q ss_pred EEeecCceeeeee
Q 020609 262 LSIEDGTVLKSFN 274 (323)
Q Consensus 262 lsIedG~~l~~~~ 274 (323)
++..+|+.+..+.
T Consensus 273 ~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 273 MNFSSGEIIDVFK 285 (329)
T ss_dssp EETTTCCEEEEEC
T ss_pred EEcCCCeEEEEEc
Confidence 8999999988763
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=93.33 E-value=0.82 Score=43.88 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=66.7
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEecccc-----eeeEEEc-CCEEEEEEecC---------CCeeeEEEEEeecCc
Q 020609 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----VQEIKIS-PGIMLLIFTKA---------SGHVPLKILSIEDGT 268 (323)
Q Consensus 204 N~kilty~aq~~~YrVfdlknYs~LYsIsde~-----VqEIkIS-~Gimll~~q~~---------~~~iPlkIlsIedG~ 268 (323)
++..++=...|++.|+||+++=+++..+...+ +.-+.+| +|.+++..... ..---+++.+..+|+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 44555555679999999999999999996422 2222355 46665543321 122346888999999
Q ss_pred eeeeeeeccccCCcchhhhhc-cceeEEE-ecCCceeEEeccccceeee
Q 020609 269 VLKSFNHLLHRNKKVDFIEQF-NEKLLVK-QENENLQILDESNSGCLEL 315 (323)
Q Consensus 269 ~l~~~~~~L~~sk~iqFiE~f-~EkLLIK-QE~~~LqI~Dl~~~~l~ev 315 (323)
.+..+..-++......|++-- ...+++- =.|..++|||+.+.+++..
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t 320 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL 320 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred EEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 887553222322222233110 0112333 2688999999999987653
No 121
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.10 E-value=1.3 Score=38.30 Aligned_cols=103 Identities=15% Similarity=0.219 Sum_probs=66.6
Q ss_pred CCceEEEEecCCCeEEEEeccCc------E-EEEEe--cccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeee
Q 020609 203 VNGKVLTYSAQDSIYKVFDLKNY------T-MLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 203 vN~kilty~aq~~~YrVfdlknY------s-~LYsI--sde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (323)
.+|+.|+-...|+..++||+.+- . .+..+ ....|..+.++| |-+++.- .... -++|.++++|+.+..
T Consensus 37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~-s~D~--~v~lwd~~~~~~~~~ 113 (343)
T 2xzm_R 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDK--TLRLWDLRTGTTYKR 113 (343)
T ss_dssp CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE-ETTS--EEEEEETTSSCEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE-cCCC--cEEEEECCCCcEEEE
Confidence 36777877788999999999752 2 23333 234577777875 3333322 2222 378999999999887
Q ss_pred eeeccccCCcchhhh--hccceeEEEecCCceeEEeccccc
Q 020609 273 FNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 273 ~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
+.. | ..+|.=+. .-+.+|+.=-.+..+++||+....
T Consensus 114 ~~~--h-~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~ 151 (343)
T 2xzm_R 114 FVG--H-QSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151 (343)
T ss_dssp EEC--C-CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred EcC--C-CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence 652 2 33332222 235677777789999999997543
No 122
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=93.07 E-value=4.5 Score=35.91 Aligned_cols=187 Identities=13% Similarity=0.167 Sum_probs=103.5
Q ss_pred hhhhccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcce
Q 020609 109 FALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (323)
Q Consensus 109 ~aL~~sG~c~af~r~tn~~iC~LN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LF 187 (323)
+|.+.-+....||..||+.+..+.. .+..-|.||=++...+.|++.| .|. .++ .- ++..|+ .+.
T Consensus 119 lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs---~Dg--~v~--iW---d~~~~~-----~~~ 183 (420)
T 4gga_A 119 LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---SSA--EVQ--LW---DVQQQK-----RLR 183 (420)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---TTS--CEE--EE---ETTTTE-----EEE
T ss_pred EEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE---CCC--eEE--EE---EcCCCc-----EEE
Confidence 3445567889999999998877775 5677899999999777666533 232 222 22 222222 121
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEe--cccceeeEEEcC-CEEEEEEecCCCeeeEEEEE
Q 020609 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILS 263 (323)
Q Consensus 188 e~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs-~LYsI--sde~VqEIkIS~-Gimll~~q~~~~~iPlkIls 263 (323)
.- -.|.+-+---..|+.+++-...++..++||..... .+..+ ....+..+..++ |-.++ .....+. ++|.+
T Consensus 184 ~~--~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~-s~~~D~~--v~i~~ 258 (420)
T 4gga_A 184 NM--TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNL--VNVWP 258 (420)
T ss_dssp EE--CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE-EEETTSC--EEEEE
T ss_pred EE--eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeee-eeecccc--ceEEe
Confidence 11 12333333333467888888899999999988755 33322 234444455543 33322 2222222 45677
Q ss_pred eecCceeeeee-eccccCCcc---hhhhhccceeEEE---ecCCceeEEeccccceeeec
Q 020609 264 IEDGTVLKSFN-HLLHRNKKV---DFIEQFNEKLLVK---QENENLQILDESNSGCLELS 316 (323)
Q Consensus 264 IedG~~l~~~~-~~L~~sk~i---qFiE~f~EkLLIK---QE~~~LqI~Dl~~~~l~ev~ 316 (323)
+.+|+...... ....+...+ .|. .....+|.= -.+..+++||+.+.++...-
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~-p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEEC-TTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred eccccccceeeeeecccCCceeeeeeC-CCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 77765432111 111112222 221 223444432 26788999999998776543
No 123
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.03 E-value=4.1 Score=35.34 Aligned_cols=182 Identities=12% Similarity=0.152 Sum_probs=105.6
Q ss_pred chhhhhhccccceeeecccccEEEE--EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCC
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICF--LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~--LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g 183 (323)
.+++.-...|....||..+++.+|. +...+..-|.++=++...+.|++.| .|. .++.-.+ ..++.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s---~D~--~v~iw~~-----~~~~~--- 95 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS---FDA--TTCIWKK-----NQDDF--- 95 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE---TTS--CEEEEEE-----CCC-E---
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE---CCC--cEEEEEc-----cCCCe---
Confidence 3455556678899999999987773 4567888899999999777776644 222 1222111 10100
Q ss_pred CcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCc---EEEEEec--ccceeeEEEcC-CEEEEEEecCC
Q 020609 184 FALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKNVQEIKISP-GIMLLIFTKAS 254 (323)
Q Consensus 184 ~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknY---s~LYsIs--de~VqEIkIS~-Gimll~~q~~~ 254 (323)
..+.. --.|.+ -+.|.. +|+.|+-...|+..++||+.+- .++..+. ...|..+..+| |-+|+.--. .
T Consensus 96 ~~~~~--~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d 171 (345)
T 3fm0_A 96 ECVTT--LEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY-D 171 (345)
T ss_dssp EEEEE--ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET-T
T ss_pred EEEEE--ccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC-C
Confidence 00000 011222 245655 5667777778999999999764 3444443 34577777775 333333322 2
Q ss_pred CeeeEEEEEeecCceeeeeeeccccCCcc---hhhhhccceeEEEecCCceeEEecc
Q 020609 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKV---DFIEQFNEKLLVKQENENLQILDES 308 (323)
Q Consensus 255 ~~iPlkIlsIedG~~l~~~~~~L~~sk~i---qFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (323)
+ -++|+++++++......+. .+...| .|- .-+.+|+.=-++..++|||+.
T Consensus 172 ~--~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 172 D--TVKLYREEEDDWVCCATLE-GHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp S--CEEEEEEETTEEEEEEEEC-CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEE
T ss_pred C--cEEEEEecCCCEEEEEEec-CCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccc
Confidence 2 2578888887644322221 223332 322 235677777899999999974
No 124
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=92.90 E-value=1.9 Score=37.06 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=67.5
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcE--EEEEec--ccceeeEEEcC---CEEEEEEecCCCeeeEEEEEeecCcee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVL 270 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs--~LYsIs--de~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~~l 270 (323)
+.|+. +|+.|+-...|+..|+||+++-+ ++..+. ...|..+..++ |-+|+.--.-.. ++|.++++|+..
T Consensus 19 v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~---v~iWd~~~~~~~ 94 (316)
T 3bg1_A 19 AQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK---VIIWREENGTWE 94 (316)
T ss_dssp EEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC---EEEECCSSSCCC
T ss_pred eeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE---EEEEECCCCcce
Confidence 45664 56667667789999999998754 455554 45688888863 555444332222 678899888532
Q ss_pred eeeeeccccCCcc---hhhhh-ccceeEEEecCCceeEEeccccc
Q 020609 271 KSFNHLLHRNKKV---DFIEQ-FNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 271 ~~~~~~L~~sk~i---qFiE~-f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
....+. .+...| .|-.. .+..|..=-.+..+++||+.+..
T Consensus 95 ~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~ 138 (316)
T 3bg1_A 95 KSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG 138 (316)
T ss_dssp EEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred EEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence 222211 123333 33221 24456667789999999998753
No 125
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=92.82 E-value=1.5 Score=37.23 Aligned_cols=107 Identities=18% Similarity=0.378 Sum_probs=67.4
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccC--cEEEEEec--ccceeeEEEcC---CEEEEEEecCCCeeeEEEEEeecCce-
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS--DKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTV- 269 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlkn--Ys~LYsIs--de~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~~- 269 (323)
+.|+ .+|+.|+-...|+..++||+.+ ..++..+. ...|..+.+++ |-+|+.--. ... ++|.++++|+.
T Consensus 15 ~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~-D~~--v~iWd~~~~~~~ 90 (297)
T 2pm7_B 15 AVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-DGK--VMIWKEENGRWS 90 (297)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-TTE--EEEEEBSSSCBC
T ss_pred EEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC-CCE--EEEEEcCCCceE
Confidence 3565 4567777778899999999974 45566654 45677888863 555444332 222 57889988852
Q ss_pred -eeeeeeccccCCc---chhhhh-ccceeEEEecCCceeEEeccccc
Q 020609 270 -LKSFNHLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 270 -l~~~~~~L~~sk~---iqFiE~-f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
+..+. .| ... +.|--. .+..|+.=-.+..+++||+.+..
T Consensus 91 ~~~~~~--~h-~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 91 QIAVHA--VH-SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp CCEEEC--CC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred EEEEee--cC-CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 32222 12 232 233221 25578888899999999998753
No 126
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=92.25 E-value=5.1 Score=34.51 Aligned_cols=204 Identities=10% Similarity=0.144 Sum_probs=111.0
Q ss_pred cceeEEeecc--chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeee--
Q 020609 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR-- 171 (323)
Q Consensus 96 S~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~-- 171 (323)
..|..+-... .+++.-..-|....||..+++.+..+.. +..-|.++=++..+..|++.|. |. .++.-.+.
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~---d~--~i~~wd~~~~ 150 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAGA---ER--EIKLWNILGE 150 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEET---TS--CEEEEESSSC
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEcC---CC--EEEEEeccCC
Confidence 3455555443 3455555678999999999998887764 4556889999988887776541 21 11111100
Q ss_pred --------------hhhh---hhCC----CCCCCcceeec------------------ccCCCCe---EEecCCCceEEE
Q 020609 172 --------------IEYI---RRGK----PDAGFALFESE------------------SLKWPGF---VEFDDVNGKVLT 209 (323)
Q Consensus 172 --------------i~~i---~~Gk----~~~g~~LFe~~------------------~L~~PgF---VEFDdvN~kilt 209 (323)
+..+ ..++ .....++|-+. ...|++. +.|.. +|+.|+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~ 229 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISP-NGKYIA 229 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECC-CCCEEE
Confidence 0000 0000 00000111110 1123333 34543 566666
Q ss_pred EecCCCeEEEEeccCcE-EEEEe-cccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccc---------
Q 020609 210 YSAQDSIYKVFDLKNYT-MLYSI-SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH--------- 278 (323)
Q Consensus 210 y~aq~~~YrVfdlknYs-~LYsI-sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~--------- 278 (323)
--..|+..++||+.+.. .+..+ ....|..+.++|.--++.. ...+. ++|+++.+++.+....+..+
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~-~~d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV-GTDQG--VKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE-EESSC--EEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEE-ECCCC--EEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 66789999999995433 22333 3456888888865433322 22333 68999998876552221100
Q ss_pred -cCCc---chhhhhccceeEEEecCCceeEEecccc
Q 020609 279 -RNKK---VDFIEQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 279 -~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
+... +.| -.-+.+|+.==++..+++||+.+.
T Consensus 307 ~~~~~v~~~~~-sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAW-NALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEE-CSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEE-CCCCCeEEEecCCceEEEEEEEcc
Confidence 1111 221 123456777778999999998653
No 127
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=92.13 E-value=4.4 Score=33.45 Aligned_cols=120 Identities=11% Similarity=0.128 Sum_probs=74.1
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEecc----CcEEEEEec-ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEee
Q 020609 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 192 L~~PgFVEFDdvN~kilty~aq~~~YrVfdlk----nYs~LYsIs-de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIe 265 (323)
...|..+.|+.....+.+.+..++..++||+. ..+.+-.+. ...+..+.++| |-.|++.....+. +.++++.
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~--i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN--VSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTE--EEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCe--EEEEECC
Confidence 34688899987655566666666999999997 444555553 23788888884 5445555544444 5778884
Q ss_pred cC---ceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEeccc-cceeee
Q 020609 266 DG---TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDESN-SGCLEL 315 (323)
Q Consensus 266 dG---~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~-~~l~ev 315 (323)
+| +.+..+.. ...-..+.| -.-+.+|++-. .+..+.+||+.+ .++..+
T Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~-s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 115 DGLPVGVVDVVEG-LDGCHSANI-SPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp TTEEEEEEEEECC-CTTBCCCEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred CCccccccccccC-CCCceEEEE-CCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 44 34433321 111112222 12255788877 788999999987 666543
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.79 E-value=1.8 Score=38.53 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=71.2
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEE--e-----cccceeeEEEcC---------CEEEEEEecCCCeeeEEE
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--I-----SDKNVQEIKISP---------GIMLLIFTKASGHVPLKI 261 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs~LYs--I-----sde~VqEIkIS~---------Gimll~~q~~~~~iPlkI 261 (323)
..+...+++.++--..|++.|+||+++-++... + -...|..+.++| |.+|+.--.- . -++|
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D-~--tv~~ 170 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD-C--TLII 170 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT-S--EEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC-C--eEEE
Confidence 445566677888888899999999999875432 1 146799999985 6665544332 2 3689
Q ss_pred EEeecCceeeeeeeccccCCcchhhhh--ccc-eeEEEecCCceeEEeccccce
Q 020609 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNE-KLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 262 lsIedG~~l~~~~~~L~~sk~iqFiE~--f~E-kLLIKQE~~~LqI~Dl~~~~l 312 (323)
.++.++..+..+.- | ..++.=+.- -+. .|+.--++..+++||+.+.+.
T Consensus 171 Wd~~~~~~~~~~~~--~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 171 WRLTDEGPILAGYP--L-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp EEEETTEEEEEEEE--C-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred EECCCCceeeeecC--C-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 99999887765542 2 233322221 233 466667899999999988754
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.49 E-value=1.8 Score=38.64 Aligned_cols=107 Identities=9% Similarity=0.083 Sum_probs=62.4
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEcC-C-EEEEEEecCCCeeeEEEEEeecCceeeeeeecc-
Q 020609 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISP-G-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL- 277 (323)
Q Consensus 203 vN~kilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS~-G-imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L- 277 (323)
.+|++|+--..|++.|+||+++-..+..+ -...|..+..+| | .+|+.- ...+. ++|.++.+|+.........
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~d~~--v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG-ERNGN--IRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE-ETTSE--EEEEETTCCC----------
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec-CCCCE--EEEEECCCCcccccccccCC
Confidence 36888888889999999999887754433 246778888886 3 243333 33333 5788998887765432100
Q ss_pred ---------------------ccCC---cchhhhhccceeEEEecCCceeEEeccccce
Q 020609 278 ---------------------HRNK---KVDFIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 278 ---------------------~~sk---~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
.+.. .+.|-..-+..|+---.++.+++||+.+...
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence 0111 1223334456677777899999999987654
No 130
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=90.62 E-value=7.3 Score=33.31 Aligned_cols=162 Identities=14% Similarity=0.203 Sum_probs=82.8
Q ss_pred EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCe---EEecC-CCce
Q 020609 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFDD-VNGK 206 (323)
Q Consensus 131 LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDd-vN~k 206 (323)
+-..+...|.++=++....-|++.| .|. .++.--+ ..|+. .++. .--.|.+- +.|.. .+|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs---~D~--~v~lwd~-----~~~~~---~~~~--~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCS---SDR--SVKIFDV-----RNGGQ---ILIA--DLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEE---TTT--EEEEEEE-----ETTEE---EEEE--EEECCSSCEEEEEECCGGGSS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEe---CCC--eEEEEEe-----cCCCc---EEEE--EEcCCCccEEEEEeCCCCCCC
Confidence 3345677788888887766666543 232 2322222 11110 0111 11124443 45643 3566
Q ss_pred EEEEecCCCeEEEEeccCc--EEEEEec--ccceeeEEEcC---CEEEEEEecCCCeeeEEEEEeecCceeeeeeecccc
Q 020609 207 VLTYSAQDSIYKVFDLKNY--TMLYSIS--DKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (323)
Q Consensus 207 ilty~aq~~~YrVfdlknY--s~LYsIs--de~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~ 279 (323)
.|+-...|+..++||+++- ..++.+. ...|..+.++| |.+|+.--.. +. ++|.++.++........+-.+
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D-~~--i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD-GA--ISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS-SC--EEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC-CC--EEEEecCCCCCcceeeeeccc
Confidence 7776778999999999874 4666654 45688888887 5554443322 22 467777766422111111111
Q ss_pred CCcc---hhhhh----------------ccceeEEEecCCceeEEecccc
Q 020609 280 NKKV---DFIEQ----------------FNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 280 sk~i---qFiE~----------------f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
...+ .|-.. .+..|+.=-++..+++||+...
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 2111 11110 1235555668899999999754
No 131
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=90.36 E-value=0.32 Score=40.72 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=51.7
Q ss_pred CcEEEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 224 NYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 224 nYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
+-+++..++-+.+.++.+.+|.++.+..+....+|..|.++.+.+++.+|||.|. -+.+.|
T Consensus 77 ~~~~v~~v~~~~f~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLA-G~~L~F 137 (151)
T 2kr7_A 77 ESSYLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLA-GKTLAF 137 (151)
T ss_dssp CSCEEEEEEGGGGTTSCCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTS-CCCEEE
T ss_pred CcceEEEEcHHHcCCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCC-CCEEEE
Confidence 4458888888888667888999988877777779999999999999999999998 666665
No 132
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=90.14 E-value=1.8 Score=40.16 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=67.6
Q ss_pred EEecCCCceEEE----EecCCCeEEEEeccCc--------EEEEEec-----ccceeeEEEcCC--EEEEEEecCCCeee
Q 020609 198 VEFDDVNGKVLT----YSAQDSIYKVFDLKNY--------TMLYSIS-----DKNVQEIKISPG--IMLLIFTKASGHVP 258 (323)
Q Consensus 198 VEFDdvN~kilt----y~aq~~~YrVfdlknY--------s~LYsIs-----de~VqEIkIS~G--imll~~q~~~~~iP 258 (323)
+.|+.. |+.|+ -...|+..+|||+.+. ..++.+. ...|..+..+|. .+++.--..+.
T Consensus 98 l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~--- 173 (434)
T 2oit_A 98 LALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS--- 173 (434)
T ss_dssp EEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC---
T ss_pred EEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe---
Confidence 466553 55555 3456899999999876 3333332 567889999863 45444333322
Q ss_pred EEEEEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEeccccce
Q 020609 259 LKILSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 259 lkIlsIedG~~l~~~~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
++|.++.+++.+.... .+... +.|-- -+.+|+.=-.+..+++||++....
T Consensus 174 v~iwD~~~~~~~~~~~---~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~~~~ 226 (434)
T 2oit_A 174 IAVLQVTETVKVCATL---PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTLQEK 226 (434)
T ss_dssp EEEEEESSSEEEEEEE---CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTCCEE
T ss_pred EEEEEcCCCcceeecc---CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCCccc
Confidence 6899999996654332 11222 23322 267888888999999999984333
No 133
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=90.13 E-value=9 Score=33.44 Aligned_cols=192 Identities=10% Similarity=-0.012 Sum_probs=113.4
Q ss_pred EEeeccc-hhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEe-EecCCCceeeeeeeehhhhhh
Q 020609 100 EIVAARD-IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSV-YASDNFSSLRCRSTRIEYIRR 177 (323)
Q Consensus 100 EIv~a~d-iI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSv-y~sd~fS~LkCr~~~i~~i~~ 177 (323)
.|....+ +.++-..+|.-.++|..|++.+-.+-. ..-.+.|.+...+ . +.||. + + ..+ ..++. ..
T Consensus 48 ~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g-~-lyv~~~~---~-~~v--~~iD~---~t 114 (328)
T 3dsm_A 48 SMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDE-K-AYVTQIW---D-YRI--FIINP---KT 114 (328)
T ss_dssp EEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETT-E-EEEEEBS---C-SEE--EEEET---TT
T ss_pred EEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCC-e-EEEEECC---C-CeE--EEEEC---CC
Confidence 3433333 344444578889999999998877732 3446777775544 3 34443 2 1 111 12221 11
Q ss_pred CCCCCCCcceee----cccCCCCeEEecCCCceEEEEec-CCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEEE
Q 020609 178 GKPDAGFALFES----ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIF 250 (323)
Q Consensus 178 Gk~~~g~~LFe~----~~L~~PgFVEFDdvN~kilty~a-q~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~~ 250 (323)
++... -+.. ....+|.-+.+ .++++...+. .++...|||+++-+.+-.|. ......|.+++ |-+++.-
T Consensus 115 ~~~~~---~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 115 YEITG---YIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTIT 189 (328)
T ss_dssp TEEEE---EEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEB
T ss_pred CeEEE---EEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEE
Confidence 11100 0110 12237888888 3788888877 48899999999998877775 34567788885 7765555
Q ss_pred ecCCCe-------eeEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEecccccee
Q 020609 251 TKASGH-------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 251 q~~~~~-------iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
...... --+.+++.+||+.+..+. ++....+.-|-.- +..|++=-. .+.+||+.+.++.
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~--~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFK--FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEEE--CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEEe--cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 443221 236788999999887665 2222223333333 566766433 8889999887764
No 134
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=89.52 E-value=12 Score=33.94 Aligned_cols=186 Identities=13% Similarity=0.309 Sum_probs=108.9
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
...|..+... ...++.-...|....||. +++.+..+.. +..-|+++-+......|++.| .|. .++.-.
T Consensus 344 ~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~---~d~--~v~~~~--- 413 (577)
T 2ymu_A 344 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS---DDK--TVKLWN--- 413 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC-CSSCEEEEEECTTSSCEEEEE---TTS--EEEEEC---
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEe---CCC--EEEEEe---
Confidence 3445555444 336666677888889985 6888887765 445689999998888777644 222 222211
Q ss_pred hhhhhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEE
Q 020609 173 EYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIM 246 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gim 246 (323)
..|+ +..+ ...|++- +.|.. +++.++....|+..++||+.. .++..+. ...|..+.++| |-+
T Consensus 414 ---~~~~------~~~~-~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 414 ---RNGQ------LLQT-LTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp ---TTCC------EEEE-EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCE
T ss_pred ---CCCC------EEEE-ecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCE
Confidence 1111 1111 1122332 45654 456666667899999999754 4444443 45677888884 444
Q ss_pred EEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccc
Q 020609 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESN 309 (323)
Q Consensus 247 ll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~ 309 (323)
|+.-. .... ++|.+ .+|+.+..+.- | ..+|.=+. .-+.+|..==++..+++||+-.
T Consensus 482 las~~-~d~~--i~iw~-~~~~~~~~~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 482 IASAS-DDKT--VKLWN-RNGQLLQTLTG--H-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEEE-TTSE--EEEEE-TTSCEEEEEEC--C-SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEEEe-CCCE--EEEEc-CCCCEEEEEeC--C-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 44332 2232 56777 57888877652 2 33332221 1245666667889999999643
No 135
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=88.84 E-value=2.6 Score=40.50 Aligned_cols=125 Identities=12% Similarity=0.003 Sum_probs=65.7
Q ss_pred chhhhhhccccceeeecccccEEEEEeCCCCc--eEEEEEeecCCCeEEEEE--------eEecCCCceeeeeeeehhhh
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADE--VIRSLFYNKNNDSLITVS--------VYASDNFSSLRCRSTRIEYI 175 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~s~dE--vIrSiFyNk~NdSlItvS--------vy~sd~fS~LkCr~~~i~~i 175 (323)
+.++--..-|....+|..||+.+..|...+.. .+.++=|+.....+.+.| +-.+++ .++.+=+.
T Consensus 194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D------~tIklWd~ 267 (356)
T 2w18_A 194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV------FQLIVINP 267 (356)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC------EEEEEEET
T ss_pred ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC------cEEEEEEC
Confidence 34555567789999999999999988643222 344444566433333322 111222 11111122
Q ss_pred hhCCCCCCCcceeecccCCC-C----eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc--cee-eEEEcC
Q 020609 176 RRGKPDAGFALFESESLKWP-G----FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQ-EIKISP 243 (323)
Q Consensus 176 ~~Gk~~~g~~LFe~~~L~~P-g----FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde--~Vq-EIkIS~ 243 (323)
..|+ +.....+..| | |++.+.. |..++--..|++.|+||+++=+++..+.+. .+. -+.+||
T Consensus 268 ~tgk------~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 268 KTTL------SVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp TTTE------EEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred CCCE------EEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 2222 1111111112 1 4443322 556666678999999999999999988632 232 355554
No 136
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=88.54 E-value=13 Score=32.95 Aligned_cols=157 Identities=14% Similarity=0.204 Sum_probs=89.5
Q ss_pred cceeEEeeccc-hhhhhhccccceeeecccccEEEE-EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020609 96 SKIIEIVAARD-IVFALAQSGVCAAFCRETNQRICF-LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (323)
Q Consensus 96 S~V~EIv~a~d-iI~aL~~sG~c~af~r~tn~~iC~-LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~ 173 (323)
..|..+-+..| -.++-+-.+-...++..+++.++. ....+...|+++=+...+..+++.|.-.. .....+..++.
T Consensus 177 ~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~---~~~~i~~~~~~ 253 (365)
T 4h5i_A 177 GEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG---KGIVLTKISIK 253 (365)
T ss_dssp SCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS---CCEEEEEEEEE
T ss_pred CceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc---ceeEEeecccc
Confidence 44555555432 222222334445666777777664 34467778999988888877777653221 12222222211
Q ss_pred hhhhCCCCCCCccee-ecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec---ccceeeEEEcC-CE
Q 020609 174 YIRRGKPDAGFALFE-SESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISP-GI 245 (323)
Q Consensus 174 ~i~~Gk~~~g~~LFe-~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs---de~VqEIkIS~-Gi 245 (323)
. ++ ..... ...-.+.+ -+.|.. +|+.|+--..|+..++||+++.+++..+. ...|..+.+|| |-
T Consensus 254 ~---~~----~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 254 S---GN----TSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST 325 (365)
T ss_dssp T---TE----EEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC
T ss_pred c---ce----ecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC
Confidence 1 10 00110 11111222 234544 67888877889999999999999999874 35688899985 55
Q ss_pred EEEEEecCCCeeeEEEEEeec
Q 020609 246 MLLIFTKASGHVPLKILSIED 266 (323)
Q Consensus 246 mll~~q~~~~~iPlkIlsIed 266 (323)
+|+ ---..++ ++|.+|..
T Consensus 326 ~la-S~S~D~t--vrvw~ip~ 343 (365)
T 4h5i_A 326 YVA-SVSAANT--IHIIKLPL 343 (365)
T ss_dssp EEE-EEETTSE--EEEEECCT
T ss_pred EEE-EEeCCCe--EEEEEcCC
Confidence 543 3333444 47788753
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=88.42 E-value=2.3 Score=40.18 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=79.5
Q ss_pred eeeeehhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc-----eeeEEE
Q 020609 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----VQEIKI 241 (323)
Q Consensus 167 Cr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~-----VqEIkI 241 (323)
++.++++++..|+.... |--+.|-. +|+.+ |...++..++||+.+-+..-.+.... +..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~-----------~~~~~~sp-dg~~~-~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~ 68 (723)
T 1xfd_A 2 KKKVTVEDLFSEDFKIH-----------DPEAKWIS-DTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI 68 (723)
T ss_dssp CCCCCHHHHTCTTTCCC-----------CCCCCBSS-SSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE
T ss_pred CccccHHHHhCCCCccc-----------ccccEEcC-CCcEE-EEeCCCCEEEEECCCCcEEEEeccccccccccceEEE
Confidence 45678889987775321 11122222 46654 44678999999999887665555443 889999
Q ss_pred c-CCEEEEEEecCCCe------eeEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEeccccce
Q 020609 242 S-PGIMLLIFTKASGH------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 242 S-~Gimll~~q~~~~~------iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
| ||-.|++....... --+.|.++++|+. ..+...-.....+..+.-. +.+|..-.+ .+|.+||+.+.+.
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence 9 56665555433221 4577999999986 2222111111112222211 345554443 6899999988777
Q ss_pred eeec
Q 020609 313 LELS 316 (323)
Q Consensus 313 ~ev~ 316 (323)
+.+.
T Consensus 147 ~~~~ 150 (723)
T 1xfd_A 147 IRVV 150 (723)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
No 138
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=88.15 E-value=8.2 Score=33.46 Aligned_cols=108 Identities=12% Similarity=0.239 Sum_probs=66.8
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEE--EEec---ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCc--
Q 020609 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSIS---DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT-- 268 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~~YrVfdlknYs~L--YsIs---de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~-- 268 (323)
.+.|.. +|+.|+-...|+..|+||+.+-+.+ ..+. ...|..+.++| |-+|+.--... . ++|.++.+++
T Consensus 21 ~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-~--v~iw~~~~~~~~ 96 (345)
T 3fm0_A 21 FLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-T--TCIWKKNQDDFE 96 (345)
T ss_dssp EEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-C--EEEEEECCC-EE
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-c--EEEEEccCCCeE
Confidence 577765 5777777788999999999987643 2332 34688888885 55544433222 2 4677777664
Q ss_pred eeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccc
Q 020609 269 VLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 269 ~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
.+..+. .+..+|.-+. .-+.+|+.=-.+..+++||+.+.+
T Consensus 97 ~~~~~~---~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 97 CVTTLE---GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp EEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred EEEEcc---CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 233332 2233332221 125577777799999999998753
No 139
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=87.79 E-value=0.48 Score=40.98 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=50.9
Q ss_pred CcEEEEEeccccee-eEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 224 NYTMLYSISDKNVQ-EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 224 nYs~LYsIsde~Vq-EIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
+-+++..++-+.+. ++++.+|.++.+-.+..+.+|..|.+|.+.+++.+|||.|. -+.+.|
T Consensus 95 ~~~lv~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLA-Gk~L~F 156 (169)
T 4dt4_A 95 SPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLA-GQTVHF 156 (169)
T ss_dssp CGGGEEEEEGGGGTTTCCCCTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTT-TCCEEE
T ss_pred ChHHEEEeCHHHCCCcCCCCCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccC-CCEEEE
Confidence 44578888888886 35788999988877778889999999999999999999998 666665
No 140
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=86.06 E-value=12 Score=38.31 Aligned_cols=188 Identities=13% Similarity=0.166 Sum_probs=112.3
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCc-----eEEEEEeecCCCeEEEEEeEecCCCceeeeee
Q 020609 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADE-----VIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (323)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dE-----vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (323)
.|.-+-.+ ...++++...|.+..|++.+ .++.+- ++- -|+++=++...+.|.+.| ++ ..++
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs----~D-GtVk--- 154 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGN----ED-GELQ--- 154 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEE----TT-SEEE---
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEc----CC-CEEE---
Confidence 35544444 56799999999999999754 555543 332 599999999888887744 33 2333
Q ss_pred eehhhhhhCCCCCC-Ccceee------cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEE---EE---ecccce
Q 020609 170 TRIEYIRRGKPDAG-FALFES------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YS---ISDKNV 236 (323)
Q Consensus 170 ~~i~~i~~Gk~~~g-~~LFe~------~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~L---Ys---Isde~V 236 (323)
+=++..|++.+. +-+..+ ..-.|=--+-|-+ +| ++..+.|+..|+||+.+-... -. .+...|
T Consensus 155 --IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 155 --FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp --EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred --EEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 333444443221 011122 1123434445553 45 556677999999999887732 23 455679
Q ss_pred eeEEEcCCEEEEEEecCCCeeeEEEEEeecCcee-eeeeeccccCCcchh-hhhccceeEEEecCCceeEEecc
Q 020609 237 QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL-KSFNHLLHRNKKVDF-IEQFNEKLLVKQENENLQILDES 308 (323)
Q Consensus 237 qEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l-~~~~~~L~~sk~iqF-iE~f~EkLLIKQE~~~LqI~Dl~ 308 (323)
..+.++++.+ +..- . =.++|.++++++.. ..+.| ...-..|.| -+.-+..|.+==|++. ++|..-
T Consensus 230 ~svaFsg~~L-ASa~-~---~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 230 TDLKIVDYKV-VLTC-P---GYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEETTEE-EEEC-S---SEEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEECCEE-EEEe-C---CeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999995444 4443 2 27899999999884 33332 122223333 1223345677667777 777764
No 141
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=85.26 E-value=0.8 Score=38.87 Aligned_cols=61 Identities=23% Similarity=0.387 Sum_probs=50.7
Q ss_pred CcEEEEEecccceee-EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 224 NYTMLYSISDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 224 nYs~LYsIsde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
+-++++.++-+.+.+ ..+.+|.++.+-.+....+|.+|..+.+.+.+.++||.|. -+.+.|
T Consensus 67 ~~~lv~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLA-Gk~L~F 128 (158)
T 3cgm_A 67 DPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLA-GKDLDF 128 (158)
T ss_dssp CGGGEEEEEGGGSCTTSCCCTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTT-TCCEEE
T ss_pred CcceEEEEEHHHCCCCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCcccc-CCEEEE
Confidence 445788888888875 5788999987777777889999999999999999999998 666665
No 142
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.76 E-value=0.99 Score=43.58 Aligned_cols=182 Identities=10% Similarity=0.095 Sum_probs=100.5
Q ss_pred hhhhhhccccceeeecccccEE-----------EEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhh
Q 020609 107 IVFALAQSGVCAAFCRETNQRI-----------CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~i-----------C~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i 175 (323)
+++.-..-|....||..+++.. ..+. .+...|.|+=++.. +.|++- ..|. .++.- ++
T Consensus 227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~-~~lasg---s~Dg----tV~lW---D~ 294 (524)
T 2j04_B 227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSP-TTVVCG---FKNG----FVAEF---DL 294 (524)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSS-SEEEEE---ETTS----EEEEE---ET
T ss_pred eEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCC-CeEEEE---eCCC----EEEEE---EC
Confidence 6666677788888888766421 1222 34456777777642 232221 2232 23333 33
Q ss_pred hhCCCCCCCcceeecccCCCCeEE----ecCCCc-eEEEEecCCCeEEEEeccCcEEEEEec----ccceeeEEEcC-CE
Q 020609 176 RRGKPDAGFALFESESLKWPGFVE----FDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIKISP-GI 245 (323)
Q Consensus 176 ~~Gk~~~g~~LFe~~~L~~PgFVE----FDdvN~-kilty~aq~~~YrVfdlknYs~LYsIs----de~VqEIkIS~-Gi 245 (323)
+.|+ .|+..- -.|.+.|- +-..+| .+++-...|++.|+||+++.+++..+. ..+|..+..+| |-
T Consensus 295 ~~~~----~~~~~~--~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 295 TDPE----VPSFYD--QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp TBCS----SCSEEE--ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred CCCC----CceEEe--ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence 3221 222210 11333332 123456 777777889999999999987544332 12477788898 54
Q ss_pred EEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEecccc
Q 020609 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
.++.- ..... ++|.++.+|+.+..+.---..-..|.| -.-+..|+-=-+|..++|||+...
T Consensus 369 ~l~s~-~~d~t--v~lwd~~~~~~~~~l~gH~~~V~sva~-Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 369 SYIYS-DGASS--LRAVPSRAAFAVHPLVSRETTITAIGV-SRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEEE-CSSSE--EEEEETTCTTCCEEEEECSSCEEEEEC-CSSCCBCEEEETTTEEECCBSCSS
T ss_pred eEEEe-CCCCc--EEEEECcccccceeeecCCCceEEEEe-CCCCCeEEEEECCCEEEEEechHh
Confidence 43332 22333 689999999887655410011122333 223556777778999999997654
No 143
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=84.40 E-value=19 Score=31.05 Aligned_cols=184 Identities=8% Similarity=0.081 Sum_probs=105.6
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCC-------CCCCcc
Q 020609 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP-------DAGFAL 186 (323)
Q Consensus 114 sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~-------~~g~~L 186 (323)
.|.-..+|..||+.+-.+......-.+.|-+....+ |++ +-. .+ . +.+..+. .|+. ..+.+-
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v-~d~--~~-~--~v~~~~~----~g~~~~~~~~~~~~~~g 136 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWV-TDV--AL-H--QVFKLDP----HSKEGPLLILGRSMQPG 136 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEE-EET--TT-T--EEEEECT----TCSSCCSEEESBTTBCC
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEE-EEC--CC-C--EEEEEeC----CCCeEEEEEecccCCCC
Confidence 456677788788876665555555677888886555 333 211 11 1 1222211 1210 000011
Q ss_pred eeecccCCCCeEEecCCCceEEEEec-CCCeEEEEeccCcEEEEEeccc------------ceeeEEEcC--CEEEEEEe
Q 020609 187 FESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDK------------NVQEIKISP--GIMLLIFT 251 (323)
Q Consensus 187 Fe~~~L~~PgFVEFDdvN~kilty~a-q~~~YrVfdlknYs~LYsIsde------------~VqEIkIS~--Gimll~~q 251 (323)
.....+.+|--+-||..+|.+...+. .++..++|| .+-+.+..+... ....|-+++ |.++ +..
T Consensus 137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~-v~d 214 (329)
T 3fvz_A 137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC-VAD 214 (329)
T ss_dssp CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE-EEE
T ss_pred CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE-EEE
Confidence 11456789999999998999999997 789999999 455666666421 266788875 5554 444
Q ss_pred cCCCeeeEEEEEeecCceeeeeeeccccCC--cchhhhhccceeEEEe--------cCCceeEEeccccceeee
Q 020609 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQ--------ENENLQILDESNSGCLEL 315 (323)
Q Consensus 252 ~~~~~iPlkIlsIedG~~l~~~~~~L~~sk--~iqFiE~f~EkLLIKQ--------E~~~LqI~Dl~~~~l~ev 315 (323)
...+ -+.+++.+||+.+..+...-+... .+.|- ...++... .+..+.+||+.+.++...
T Consensus 215 ~~~~--~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 215 RENG--RIQCFKTDTKEFVREIKHASFGRNVFAISYI---PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp TTTT--EEEEEETTTCCEEEEECCTTTTTCEEEEEEE---TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred CCCC--EEEEEECCCCcEEEEEeccccCCCcceeeec---CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 4444 357889889998887642111100 01111 12222221 334778899888777654
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=81.99 E-value=17 Score=28.70 Aligned_cols=190 Identities=7% Similarity=0.024 Sum_probs=97.1
Q ss_pred ccccceeeeccc-ccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecc
Q 020609 113 QSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (323)
Q Consensus 113 ~sG~c~af~r~t-n~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~ 191 (323)
..|.-..+|..+ ++....+.......|.++-++.....|++++.. .+ ...+...++.. .|+. ..+.....
T Consensus 60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~--~~~~l~~~~~~---~~~~---~~~~~~~~ 130 (297)
T 2ojh_A 60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV-EF--GKSAIYLLPST---GGTP---RLMTKNLP 130 (297)
T ss_dssp ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT-TT--SSCEEEEEETT---CCCC---EECCSSSS
T ss_pred cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC-CC--CcceEEEEECC---CCce---EEeecCCC
Confidence 456677788888 777666555555778888888877776664421 11 22333333221 1111 11211111
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEeccCc-EEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecC
Q 020609 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 192 L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknY-s~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG 267 (323)
+-.+.|..-+..++.....++.+++|++..- ..+..+. ...+..+.++| |-.+++.....+.+-+-.+++.++
T Consensus 131 ---~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 131 ---SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp ---EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred ---ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 2334566544444434556888999996421 2233333 24677888874 544444443344444434443333
Q ss_pred ceeeeeeeccccCCcchhhhhccceeEEEecC-----------CceeEEeccccceeeec
Q 020609 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN-----------ENLQILDESNSGCLELS 316 (323)
Q Consensus 268 ~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~-----------~~LqI~Dl~~~~l~ev~ 316 (323)
.+..+...-..-..+.| -.-+.+|++--.+ ..|.+||+.+.++..+.
T Consensus 208 -~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 208 -SVERITDSAYGDWFPHP-SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp -CEEECCCCSEEEEEEEE-CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred -CcEEEecCCcccCCeEE-CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 33333210010111222 1235566655433 56999999987765443
No 145
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=80.87 E-value=8.4 Score=39.32 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=70.9
Q ss_pred EecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc------ceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCce--
Q 020609 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV-- 269 (323)
Q Consensus 199 EFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde------~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~-- 269 (323)
-|-+ +|+.|+-...++..++||.++ ++..+.++ .|..+-+| +|-+|++-...+. ++|.++++|..
T Consensus 92 awSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGt---VkIWd~~~~~l~~ 165 (588)
T 2j04_A 92 KPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGE---LQFFSIRKNSENT 165 (588)
T ss_dssp EECS-SSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSE---EEEEECCCCTTTC
T ss_pred EECC-CCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCE---EEEEECCCCcccc
Confidence 3443 677777778899999999777 66666623 28889988 5666655554443 68999998863
Q ss_pred -----eeeee-eccccCCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 270 -----LKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 270 -----l~~~~-~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+..+. +.-.+...|.=+--..+.|+.=-.|..+++||+-+.++.
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSC
T ss_pred ccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccc
Confidence 44432 111112233222222333778889999999999888754
No 146
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=80.72 E-value=16 Score=31.90 Aligned_cols=118 Identities=13% Similarity=0.030 Sum_probs=69.6
Q ss_pred ccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCC
Q 020609 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (323)
Q Consensus 115 G~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~ 194 (323)
+.-..+|..|++.+-.+......-.+.|-++..++.|.+++ . ....+ +...|++. ..+... ....+
T Consensus 203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-----~----~v~~~---d~~t~~~~-~~~~~~-~~~~~ 268 (328)
T 3dsm_A 203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-----N----DIWRM---PVEADRVP-VRPFLE-FRDTK 268 (328)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-----S----SEEEE---ETTCSSCC-SSCSBC-CCSSC
T ss_pred ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-----c----EEEEE---ECCCCcee-eeeeec-CCCCc
Confidence 34556666666665555543333456666776555554421 1 22233 33344442 122222 12578
Q ss_pred CCeEEecCCCceEEEEe----cCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecC
Q 020609 195 PGFVEFDDVNGKVLTYS----AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKA 253 (323)
Q Consensus 195 PgFVEFDdvN~kilty~----aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~ 253 (323)
|.-+.+|+.+|++...+ ...+...+||.. -+++-+|. +-..|+.|.+-.+-.
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~------~G~~P~~~~~~~~~~ 324 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY------VGIIPGAFCWKLEHH 324 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE------EEESEEEEEEECCCC
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE------eccCcceEEEecccc
Confidence 99999999999999988 678888899987 66666553 445577776554433
No 147
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=80.15 E-value=23 Score=32.04 Aligned_cols=117 Identities=12% Similarity=0.164 Sum_probs=69.4
Q ss_pred eEEecCCCceEEEEecCCC---eEEEEeccCcEEEEEe-cccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceee
Q 020609 197 FVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSI-SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~---~YrVfdlknYs~LYsI-sde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
.+.|.. +|+-++|...++ ..++||+++-+..--. ....+..+.+| +|-.|++.....+..-+.++++.+|+...
T Consensus 183 ~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~ 261 (415)
T 2hqs_A 183 SPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 261 (415)
T ss_dssp EEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred eeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEe
Confidence 344544 567677766654 8999999987654222 23467888998 46555544444445568889999998643
Q ss_pred eeeeccccCCcchhhhhccceeEEEec-CC--ceeEEeccccceeeec
Q 020609 272 SFNHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDESNSGCLELS 316 (323)
Q Consensus 272 ~~~~~L~~sk~iqFiE~f~EkLLIKQE-~~--~LqI~Dl~~~~l~ev~ 316 (323)
-..+. ..-..+.|- .=+.+|+.-.. +. .|.+||+.+.++..+.
T Consensus 262 l~~~~-~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~ 307 (415)
T 2hqs_A 262 VTDGR-SNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT 307 (415)
T ss_dssp CCCCS-SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred CcCCC-CcccceEEC-CCCCEEEEEECCCCCcEEEEEECCCCCEEEEe
Confidence 21111 111123332 22556777664 34 5666699887766553
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=78.23 E-value=18 Score=34.30 Aligned_cols=184 Identities=9% Similarity=-0.016 Sum_probs=99.1
Q ss_pred cceeeecccccEEEEEeCCCC-----------------------ceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 116 VCAAFCRETNQRICFLNVTAD-----------------------EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 116 ~c~af~r~tn~~iC~LN~s~d-----------------------EvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
....+|..+|+..-.+..... .-|.++-++...+.|+++|- .. .+..
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~------~~--i~~~-- 134 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG------GE--LYLY-- 134 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET------TE--EEEE--
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC------Cc--EEEE--
Confidence 566677777776665543211 23667778887777877552 12 2222
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc-----------------
Q 020609 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN----------------- 235 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~----------------- 235 (323)
++..|....-..|... -.++..+.|.. +|+-|+|.. ++...+||+.+-+..-...+..
T Consensus 135 -d~~~~~~~~~~~l~~~--~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~ 209 (741)
T 2ecf_A 135 -DLKQEGKAAVRQLTHG--EGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMD 209 (741)
T ss_dssp -ESSSCSTTSCCBCCCS--SSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSC
T ss_pred -ECCCCCcceEEEcccC--CcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccc
Confidence 2222300001122221 12344566665 566666655 4689999998866543222211
Q ss_pred -eeeEEEc-CCEEEEEEecC------------------------------CCeeeEEEEEeec-Cceeeeeee--ccccC
Q 020609 236 -VQEIKIS-PGIMLLIFTKA------------------------------SGHVPLKILSIED-GTVLKSFNH--LLHRN 280 (323)
Q Consensus 236 -VqEIkIS-~Gimll~~q~~------------------------------~~~iPlkIlsIed-G~~l~~~~~--~L~~s 280 (323)
+..+.+| ||-.|++.... ...+-+.++++.+ |+...-... .-..-
T Consensus 210 ~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 289 (741)
T 2ecf_A 210 RHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYL 289 (741)
T ss_dssp CCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEE
T ss_pred cccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEE
Confidence 3668888 45444443221 1344677888888 875432110 00011
Q ss_pred CcchhhhhccceeEEEe-----cCCceeEEeccccceeeec
Q 020609 281 KKVDFIEQFNEKLLVKQ-----ENENLQILDESNSGCLELS 316 (323)
Q Consensus 281 k~iqFiE~f~EkLLIKQ-----E~~~LqI~Dl~~~~l~ev~ 316 (323)
..+.| .=+.+|++-. .+..|.+||+.+.++..+-
T Consensus 290 ~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 290 ARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 23444 4456676543 3567999999998876654
No 149
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=78.11 E-value=0.84 Score=40.25 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=47.4
Q ss_pred CcEEEEEecccceee-EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 224 NYTMLYSISDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 224 nYs~LYsIsde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
+-++++.++-+.+.+ +.+.+|+++.+..+.. .+|..|.+|.+.+++.+|||.|. -+.+.|
T Consensus 72 ~~~lV~~vp~~~f~~~~~~~~G~~~~~~~~~G-~~~~~V~~v~~~~V~vD~NHPLA-Gk~L~F 132 (196)
T 2kfw_A 72 DENLVQRVPKDVFMGVDELQVGMRFLAETDQG-PVPVEITAVEDDHVVVDGNHMLA-GQNLKF 132 (196)
T ss_dssp CTTTCEEECGGGCCCSSCCCTTCEEEEEETTE-EEEEEBCCCCSSSEEECCCCTTS-CCCCEE
T ss_pred ChhhEEEEEHHHCCCccCcccCCEEEEECCCC-cEEEEEEEEcCCEEEEeCCCCCC-CCeEEE
Confidence 445777788788875 4688999976655554 89999999999999999999997 666665
No 150
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=77.74 E-value=43 Score=30.74 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=70.5
Q ss_pred eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcC-CEEEEEEecCCCeeeEEEEEe
Q 020609 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (323)
Q Consensus 187 Fe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsI 264 (323)
+....+.+|-++-|| .+|++...+..++..++||+.+-....-+.. +.-. +-+++ |-.|+......++ -+..++.
T Consensus 125 ~~~a~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~-~I~~~d~ 201 (409)
T 3hrp_A 125 LASAKFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTH-TVYVYMK 201 (409)
T ss_dssp TTTCCCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTC-EEEEEEG
T ss_pred HHHcccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCc-eEEEEEc
Confidence 444578899999999 5788988888889999999986554333332 2222 44442 2233333332221 3455555
Q ss_pred ecCceeeeeeeccc-cCCcchhhhh--ccceeEEEecCCceeEEeccccceeee
Q 020609 265 EDGTVLKSFNHLLH-RNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 265 edG~~l~~~~~~L~-~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
.++.....+....+ ....+.-+-. -+..|++-..+..+..||..+..+..+
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 55554333311101 1111111211 256788865666788888877665444
No 151
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=77.33 E-value=31 Score=28.96 Aligned_cols=183 Identities=12% Similarity=0.099 Sum_probs=100.0
Q ss_pred chhhhhhccccceeeeccc--ccEEEEEeCCCCceEEEEEeecC--CCeEEEEEeEecCCCceeeeeeeehhhhhhCCCC
Q 020609 106 DIVFALAQSGVCAAFCRET--NQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~t--n~~iC~LN~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~ 181 (323)
..++.-...|....||..+ ++.+..|. .+..-|.++=++.. .+-|++.| .|. .++. - ++..|+.
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s---~D~--~v~i--W---d~~~~~~- 89 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCS---YDG--KVMI--W---KEENGRW- 89 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEE---TTT--EEEE--E---EBSSSCB-
T ss_pred CEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEc---CCC--EEEE--E---EcCCCce-
Confidence 3555556678888998764 46666775 45556788877543 34444433 232 2222 2 2222321
Q ss_pred CCCcceeecccCCCCe---EEecCC-CceEEEEecCCCeEEEEeccCcE----EEEEecccceeeEEEcCC---------
Q 020609 182 AGFALFESESLKWPGF---VEFDDV-NGKVLTYSAQDSIYKVFDLKNYT----MLYSISDKNVQEIKISPG--------- 244 (323)
Q Consensus 182 ~g~~LFe~~~L~~PgF---VEFDdv-N~kilty~aq~~~YrVfdlknYs----~LYsIsde~VqEIkIS~G--------- 244 (323)
..+..- -.|++. +.|... +|..++--..|+..++||+++-. ..+.-....|..+..+|.
T Consensus 90 --~~~~~~--~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 90 --SQIAVH--AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp --CCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred --EEEEEe--ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence 111110 113332 456543 36677777789999999998652 233334456777777764
Q ss_pred -----EEEEEEecCCCeeeEEEEEeecCce----eeeeeeccccCCc---chhhhhc--cceeEEEecCCceeEEecccc
Q 020609 245 -----IMLLIFTKASGHVPLKILSIEDGTV----LKSFNHLLHRNKK---VDFIEQF--NEKLLVKQENENLQILDESNS 310 (323)
Q Consensus 245 -----imll~~q~~~~~iPlkIlsIedG~~----l~~~~~~L~~sk~---iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~ 310 (323)
-+|+.-- ..+. ++|.++.+++. +..+. .+... +.|-..- +.+|.-=-.+..++|||+.+.
T Consensus 166 ~~~~~~~l~sgs-~D~~--v~lwd~~~~~~~~~~~~~l~---~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 166 GTKESRKFVTGG-ADNL--VKIWKYNSDAQTYVLESTLE---GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ----CCEEEEEE-TTSC--EEEEEEETTTTEEEEEEEEC---CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CCCCcceEEEEc-CCCc--EEEEEEcCCCceEEEEEEec---CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 2333222 2222 68888888873 22222 12332 3332211 245556668999999999874
No 152
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=77.25 E-value=1.4 Score=37.89 Aligned_cols=60 Identities=22% Similarity=0.378 Sum_probs=47.7
Q ss_pred CcEEEEEecccceee-EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 224 NYTMLYSISDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 224 nYs~LYsIsde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
+-+++..++-+.+.+ ..+.+|.++.+..+... +|..|.+|.+.+++.+|||.|. -+.+.|
T Consensus 72 ~~~~v~~v~~~~f~~~~~~~~G~~~~~~~~~G~-~~~~V~~v~~~~V~vD~NHPLA-Gk~L~F 132 (171)
T 2k8i_A 72 DENLVQRVPKDVFMGVDELQVGMRFLAETDQGP-VPVEITAVEDDHVVVDGNHMLA-GQNLKF 132 (171)
T ss_dssp CTTSEEEEEGGGGTTSSCCCTTCEEEEEETTEE-EEEEEEEECSSEEEEESCCSSC-CCEEEE
T ss_pred ChhhEEEeeHHHCCcccCccCCcEEEEECCCCc-EEEEEEEEcCCEEEEeCCCCCC-CCeEEE
Confidence 334677777777765 46789999887776665 8999999999999999999987 666664
No 153
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=76.65 E-value=30 Score=28.42 Aligned_cols=176 Identities=14% Similarity=0.212 Sum_probs=103.5
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceee-ccc
Q 020609 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESL 192 (323)
Q Consensus 114 sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~-~~L 192 (323)
.+.-..|| .+++.+-.+......-+++|.+...++ +++ +.. .+ ..+..-. ..|+. ...|.. ..+
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~--~~-~~i~~~~------~~g~~---~~~~~~~~~~ 163 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIV-VEC--KV-MRVIIFD------QNGNV---LHKFGCSKHL 163 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEE-EET--TT-TEEEEEC------TTSCE---EEEEECTTTC
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEE-EEC--CC-CEEEEEc------CCCCE---EEEeCCCCcc
Confidence 56677888 467777666655556788998888664 333 211 11 1222211 01221 111211 346
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc----cceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecC
Q 020609 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 193 ~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd----e~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG 267 (323)
.+|--+.||. +|++...+..++..++||..+ ..+..+.. .....|.++ +|-+++. ....+ =-+.+++ .+|
T Consensus 164 ~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~-~~~~~-~~i~~~~-~~g 238 (286)
T 1q7f_A 164 EFPNGVVVND-KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIA-DNHNN-FNLTIFT-QDG 238 (286)
T ss_dssp SSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEE-ECSSS-CEEEEEC-TTS
T ss_pred CCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEE-eCCCC-EEEEEEC-CCC
Confidence 6788899987 578888888889999999854 45666643 356778886 4655433 33322 0246677 478
Q ss_pred ceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccc
Q 020609 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESN 309 (323)
Q Consensus 268 ~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (323)
+.+..+....+...+..+.---..+|+|=-.+..+++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 877776543222222121111144688877788999999754
No 154
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=76.61 E-value=15 Score=35.44 Aligned_cols=136 Identities=15% Similarity=0.019 Sum_probs=75.7
Q ss_pred cceeEEeec-cchhhhhhccccceeeecccccEEEEEeCCCCceEEEE--EeecCC-CeEEEEEeEecCCCceeeeeeee
Q 020609 96 SKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSL--FYNKNN-DSLITVSVYASDNFSSLRCRSTR 171 (323)
Q Consensus 96 S~V~EIv~a-~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSi--FyNk~N-dSlItvSvy~sd~fS~LkCr~~~ 171 (323)
..|.-+-.. .+.|++=...|.+..||..+++.....-..+..-|.+| +++... ..|++.| .|. ..+.-
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S---~D~----tvklW- 338 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA---VDG----YFYIF- 338 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE---TTS----EEEEE-
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec---cCC----eEEEE-
Confidence 445554433 34566666779999999988753323334567789999 566543 3344433 233 22233
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCC
Q 020609 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG 244 (323)
Q Consensus 172 i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~G 244 (323)
+++.++.- ..+-......+.--+.|.. +++.++....++..|+||+++..++..+. ...|..+.+||.
T Consensus 339 --D~~~~~~~--~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 339 --NPKDIATT--KTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp --CGGGHHHH--CEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred --ECCCCCcc--cccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 33322210 0010001000111266765 45566667788899999999987655543 346777777754
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=76.02 E-value=36 Score=29.01 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=72.8
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcE--EEEEecc-----cceeeEEEc-CCEEEEEEecC-CCeeeEEEEE
Q 020609 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD-----KNVQEIKIS-PGIMLLIFTKA-SGHVPLKILS 263 (323)
Q Consensus 193 ~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs--~LYsIsd-----e~VqEIkIS-~Gimll~~q~~-~~~iPlkIls 263 (323)
..|--+.|+.-...+.+.+..++...+||+.+-+ .+..++. .....|.+| +|-.|++.... .+. +.|++
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~--i~v~~ 288 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG--VAIFK 288 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE--EEEEE
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE--EEEEE
Confidence 4566788987555566666678999999998654 3444442 224588898 56666565555 554 46666
Q ss_pred e--ecCceeeeeeeccc-cCCcchhhhhccceeEEEe-cCCceeE--Eeccccceeeec
Q 020609 264 I--EDGTVLKSFNHLLH-RNKKVDFIEQFNEKLLVKQ-ENENLQI--LDESNSGCLELS 316 (323)
Q Consensus 264 I--edG~~l~~~~~~L~-~sk~iqFiE~f~EkLLIKQ-E~~~LqI--~Dl~~~~l~ev~ 316 (323)
+ ++|+...-...... .-..+.| -.=+.+|++=- .+..+.+ +|..+.+++++.
T Consensus 289 ~~~~~g~~~~~~~~~~g~~~~~~~~-spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 289 VDETNGTLTKVGYQLTGIHPRNFII-TPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp ECTTTCCEEEEEEEECSSCCCEEEE-CTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred EcCCCCcEEEeeEecCCCCCceEEE-CCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 6 47773322111110 1112232 12355677765 7788999 566688887765
No 156
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=75.74 E-value=39 Score=29.26 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhcccee
Q 020609 214 DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL 293 (323)
Q Consensus 214 ~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkL 293 (323)
++....+|.++=+.+++........+-+.++.+.+.-. .. -+..++..||+.+-.... ++.. .+.-.-..+.+|
T Consensus 248 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~-~g---~l~~~d~~tG~~~w~~~~-~~~~-~~~~~~~~~~~l 321 (376)
T 3q7m_A 248 NGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQ-ND---RVMALTIDGGVTLWTQSD-LLHR-LLTSPVLYNGNL 321 (376)
T ss_dssp TSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEET-TC---CEEEEETTTCCEEEEECT-TTTS-CCCCCEEETTEE
T ss_pred CcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcC-CC---eEEEEECCCCcEEEeecc-cCCC-cccCCEEECCEE
Confidence 44455556655566666555556667777777754432 22 256788999998876652 1111 111122357889
Q ss_pred EEEecCCceeEEeccccceee
Q 020609 294 LVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 294 LIKQE~~~LqI~Dl~~~~l~e 314 (323)
++=-.+..|.++|..+.++.-
T Consensus 322 ~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp EEECTTSEEEEEETTTCCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEE
Confidence 998888899999999887653
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=74.32 E-value=39 Score=28.54 Aligned_cols=175 Identities=10% Similarity=0.109 Sum_probs=94.3
Q ss_pred hhhhhhccccceeeecc-cccEEE--EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCC
Q 020609 107 IVFALAQSGVCAAFCRE-TNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (323)
Q Consensus 107 iI~aL~~sG~c~af~r~-tn~~iC--~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g 183 (323)
++++-...+...+|+.. +|+... .+...+..-.+.+-+....+.|++++ . .+ ..+....+.. ..|++..
T Consensus 154 l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~-~-~~--~~v~v~~~~~---~~g~~~~- 225 (347)
T 3hfq_A 154 LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG-E-LS--SQIASLKYDT---QTGAFTQ- 225 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-T-TT--TEEEEEEEET---TTTEEEE-
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe-C-CC--CEEEEEEecC---CCCceEE-
Confidence 44443445666778776 555432 23444455667788887665555432 1 11 1222222211 0011100
Q ss_pred Ccceeecc-----cCCCCeEEecCCCceEEEEecCCCeEEEEecc---CcEEEEEecc--cceeeEEEc-CCEEEEEEec
Q 020609 184 FALFESES-----LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISD--KNVQEIKIS-PGIMLLIFTK 252 (323)
Q Consensus 184 ~~LFe~~~-----L~~PgFVEFDdvN~kilty~aq~~~YrVfdlk---nYs~LYsIsd--e~VqEIkIS-~Gimll~~q~ 252 (323)
...+.... ..+|.-+.|+.-...+.+.+..++...|||+. ..+.+..++. .....+.+| +|-.|++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 00001111 13455588887554565667778999999997 5667777664 467889998 4666677766
Q ss_pred CCCeeeEEEEEeecCceeeeee-eccccCCcchhhhhc
Q 020609 253 ASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQF 289 (323)
Q Consensus 253 ~~~~iPlkIlsIedG~~l~~~~-~~L~~sk~iqFiE~f 289 (323)
..+.+-+--++.++|+...--. ..++.--.+-|+|.+
T Consensus 306 ~~~~v~v~~~d~~tg~l~~~~~~~~~p~p~~~~~~~~~ 343 (347)
T 3hfq_A 306 NTDNATLYARDLTSGKLSLLQKDVTVPEGVCVRFLEHH 343 (347)
T ss_dssp TTTEEEEEEECTTTCCEEEEEEEEECTTEEEEEECC--
T ss_pred CCCcEEEEEEeCCCCeEEecccceecCCCcEEEehhhc
Confidence 6666554444777888764221 234555555566644
No 158
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=72.16 E-value=78 Score=31.07 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=108.3
Q ss_pred chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCc
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~ 185 (323)
-++++...+|.-+++|..|++.+-.|-... ..+.+-++...+.+.+.| .|+ ....+++ ..+ .+..
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~---~dg----~V~viD~---~~~---t~~~ 232 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG---RDG----KVNMIDL---WMK---EPTT 232 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE---TTS----EEEEEET---TSS---SCCE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEc---CCC----eEEEEEC---CCC---CCcE
Confidence 456666778999999999999988886543 567888888777766543 122 2333322 100 1112
Q ss_pred ceeecccCCCCeEEecC---CCc-eEEEEecCCCeEEEEeccCcEEEEEeccc-------------ceeeEEEcCC-EEE
Q 020609 186 LFESESLKWPGFVEFDD---VNG-KVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------NVQEIKISPG-IML 247 (323)
Q Consensus 186 LFe~~~L~~PgFVEFDd---vN~-kilty~aq~~~YrVfdlknYs~LYsIsde-------------~VqEIkIS~G-iml 247 (323)
+-+-..=..|--+.|+. .+| .+.+.+-..+.+.|||..+.+.+-.|+-. .+..|..|+. -.+
T Consensus 233 v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 233 VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred eEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 22222224577889985 455 56666777899999999999988777621 3445555532 111
Q ss_pred EEEecCCCee---------eEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEeccccceee
Q 020609 248 LIFTKASGHV---------PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDESNSGCLE 314 (323)
Q Consensus 248 l~~q~~~~~i---------PlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~l~e 314 (323)
++.....+.| .+++-.|+.|..++.+. +-.-+.++|+= +....+.++|+.+.++..
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~-----------~~pdgr~~~va~~~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG-----------LDGSHRYFITAANARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE-----------ECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEEecCCCeEEEEecCCCccceeeeeeccccccCce-----------ECCCCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence 1111111111 23344455554444433 22346777774 456779999999988764
No 159
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=70.30 E-value=42 Score=28.97 Aligned_cols=151 Identities=13% Similarity=0.186 Sum_probs=83.1
Q ss_pred chhhhhhc-cccceeeecccccEEEEEeCCCC-----ceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCC
Q 020609 106 DIVFALAQ-SGVCAAFCRETNQRICFLNVTAD-----EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (323)
Q Consensus 106 diI~aL~~-sG~c~af~r~tn~~iC~LN~s~d-----EvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk 179 (323)
.++++-.. .+...+||+ +|+.+-.+..... .-.+.+-...+.+ +++ +. +++ ..+.|-.. . ||
T Consensus 89 ~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv-~~--~~~-~~v~~~d~-----~-G~ 156 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLV-PL--FAT-SEVREIAP-----N-GQ 156 (276)
T ss_dssp CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEE-EE--TTT-TEEEEECT-----T-SC
T ss_pred CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEE-Ee--cCC-CEEEEECC-----C-CC
Confidence 34444443 566677776 6777666553211 1222333344333 332 22 122 23333221 2 44
Q ss_pred CCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeE---------EEcCCEEEEEE
Q 020609 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEI---------KISPGIMLLIF 250 (323)
Q Consensus 180 ~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEI---------kIS~Gimll~~ 250 (323)
.+.+-..-.+|--+.++ .||.++..+..++....||..+-+.+.++...++... .+.+|.+++.-
T Consensus 157 -----~~w~~~~~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 157 -----LLNSVKLSGTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -----EEEEEECSSCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -----EEEEEECCCCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 35554444577777774 5788888888888899999999999999975543321 13466665543
Q ss_pred ecCCCe-----eeEEEEEe-ecCceeeeee
Q 020609 251 TKASGH-----VPLKILSI-EDGTVLKSFN 274 (323)
Q Consensus 251 q~~~~~-----iPlkIlsI-edG~~l~~~~ 274 (323)
-..+.. =...++.| .+|+.+-++.
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 231 WQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp ECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred ccCccccccccCCceEEEECCCCCEEEEec
Confidence 222110 12356666 5888876654
No 160
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=69.66 E-value=37 Score=33.71 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=78.6
Q ss_pred chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCc
Q 020609 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (323)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~ 185 (323)
++|++-...|.-.++|+.||+.+--+...+.... ..-| ..|+.+.....+- .+
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~-----------------~~~d----~~g~~~~~~~~~~----~~-- 380 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-----------------SGYD----KHGKPIGIAAARD----GS-- 380 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-----------------EEEC----TTSCEEECGGGGC----TT--
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcc-----------------cccC----CCCceeeccccCc----CC--
Confidence 6777778899999999999998876655441100 0001 2344443222110 11
Q ss_pred ceeecccCCCC--------eEEecCCCceEEEEec------------------------------------------CCC
Q 020609 186 LFESESLKWPG--------FVEFDDVNGKVLTYSA------------------------------------------QDS 215 (323)
Q Consensus 186 LFe~~~L~~Pg--------FVEFDdvN~kilty~a------------------------------------------q~~ 215 (323)
...+.+|| -+-||..++.+.+-.. ..+
T Consensus 381 ---~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 381 ---KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp ---SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred ---CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 11234453 3677877777655321 127
Q ss_pred eEEEEeccCcEEEEEecccc-eee--EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeee
Q 020609 216 IYKVFDLKNYTMLYSISDKN-VQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 216 ~YrVfdlknYs~LYsIsde~-VqE--IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
....||+++-+.+.++.... +.- +-..+|++ ++- -..+ -+.+++..||+++.++.
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v-~~g-~~dg--~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVV-FQG-TADG--RLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE-EEE-CTTS--EEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEE-EEE-CCCC--cEEEEECCCCceeeeee
Confidence 78899999999998886432 111 22224443 222 2233 36799999999999987
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=69.11 E-value=57 Score=28.33 Aligned_cols=123 Identities=7% Similarity=0.003 Sum_probs=71.9
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEecc-C--cEEEEEec----ccceeeEEEcC-CEEEEEEecCCCeeeEEEEE
Q 020609 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-N--YTMLYSIS----DKNVQEIKISP-GIMLLIFTKASGHVPLKILS 263 (323)
Q Consensus 192 L~~PgFVEFDdvN~kilty~aq~~~YrVfdlk-n--Ys~LYsIs----de~VqEIkIS~-Gimll~~q~~~~~iPlkIls 263 (323)
-.+|-.+.|+.-...+.+-+..++..++||+. + ...+..+. ......+.++| |-.|++.....+.+-+--++
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 35678888987555565556667889999997 3 33444553 45688888984 54555555555554333334
Q ss_pred eecCceeee--eeeccccC--------------CcchhhhhccceeEEEecCC------ceeEEecc-ccceee
Q 020609 264 IEDGTVLKS--FNHLLHRN--------------KKVDFIEQFNEKLLVKQENE------NLQILDES-NSGCLE 314 (323)
Q Consensus 264 IedG~~l~~--~~~~L~~s--------------k~iqFiE~f~EkLLIKQE~~------~LqI~Dl~-~~~l~e 314 (323)
.++|+.... ....++.. ..+.|+-.=+.+|++=-.+. .+++||+. +.++..
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred CCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 447875421 11122211 12333334456777765443 79999996 566654
No 162
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=68.68 E-value=33 Score=31.18 Aligned_cols=117 Identities=13% Similarity=0.196 Sum_probs=61.5
Q ss_pred EEeeccchhhhhhccccceeeecc-------cccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 100 EIVAARDIVFALAQSGVCAAFCRE-------TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 100 EIv~a~diI~aL~~sG~c~af~r~-------tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
+.+..+++++.+++.|.....+.. .++-+.-+|-..++.+.++|.-..++.++++| +.=+++.++.
T Consensus 3 dli~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T-------~~G~~~~~~~ 75 (312)
T 1suu_A 3 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMIS-------NEGKLYLINA 75 (312)
T ss_dssp -----CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEE-------TTSEEEEEEG
T ss_pred cccCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEE-------CCCeEEEEEH
Confidence 566678899999999998654322 23345666754544455667777788888877 4557778888
Q ss_pred hhhhhCCC-CCCCcceeecccCCC-----CeE---EecCCCceEEEEecCCCeEEEEeccCcE
Q 020609 173 EYIRRGKP-DAGFALFESESLKWP-----GFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (323)
Q Consensus 173 ~~i~~Gk~-~~g~~LFe~~~L~~P-----gFV---EFDdvN~kilty~aq~~~YrVfdlknYs 226 (323)
.+|..+.. ..|.|+-..-.|. | +.+ +|+ .+..++.... .|-.+-..+.+|.
T Consensus 76 ~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~-~~~~ll~~T~-~G~~kr~~l~~~~ 135 (312)
T 1suu_A 76 YEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLT-DDAYLLLTTA-SGKIARFESTDFK 135 (312)
T ss_dssp GGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCC-TTCEEEEEET-TSEEEEEEGGGGC
T ss_pred HHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCC-CCCEEEEEeC-CCeEEEEEHHHhh
Confidence 77755432 3344432221121 1 111 222 3455555544 4444445777764
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=66.86 E-value=42 Score=29.82 Aligned_cols=75 Identities=13% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCeEEecCCCceEEEEec----------CCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCeeeEEEEE
Q 020609 195 PGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (323)
Q Consensus 195 PgFVEFDdvN~kilty~a----------q~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIls 263 (323)
|..+-|+.-.+++.+... ..+...|||+++.+.+-.|+-.....|-++ +|-.|+.... =-+.++|
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n~----~~v~v~D 331 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLDG----GNVNVYD 331 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEECS----SCEEEEE
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeCC----CeEEEEE
Q ss_pred eecC--ceeeee
Q 020609 264 IEDG--TVLKSF 273 (323)
Q Consensus 264 IedG--~~l~~~ 273 (323)
.+|| ++++.+
T Consensus 332 ~~t~~l~~~~~i 343 (361)
T 2oiz_A 332 ISQPEPKLLRTI 343 (361)
T ss_dssp CSSSSCEEEEEE
T ss_pred CCCCcceeeEEe
No 164
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=65.66 E-value=29 Score=32.81 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=58.7
Q ss_pred CCCCCCCcceeeccc---CCCCeEEecCCCceEEEEecCCCeEEEEeccCcEE----EEEec----------------cc
Q 020609 178 GKPDAGFALFESESL---KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSIS----------------DK 234 (323)
Q Consensus 178 Gk~~~g~~LFe~~~L---~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~----LYsIs----------------de 234 (323)
|.+-+|..++.+..- .-|.+. |.-++|...++ . +||+++=+. |+.-. ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~w~------g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 82 (706)
T 2z3z_A 11 GSLMPGGKEFYNFYPEYVVGLQWM------GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAF 82 (706)
T ss_dssp -----------------CTTCEEE------TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------C
T ss_pred ccccCCcccccccccccCCCCcCc------CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcccccccc
Confidence 444555556555443 334555 33445555666 5 999988755 33322 14
Q ss_pred ceeeEEEcCC-EEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccc--
Q 020609 235 NVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESN-- 309 (323)
Q Consensus 235 ~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~-- 309 (323)
.+..+.+||. .+++... --+.++++.+|+...-+.+ ...+..+. .=+.+|.. -.+.+|.+||+.+
T Consensus 83 ~v~~~~~spd~~~~~~~~-----~~i~~~d~~~~~~~~l~~~----~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQ-----GGLVGFDMLARKVTYLFDT----NEETASLDFSPVGDRVAY-VRNHNLYIARGGKLG 152 (706)
T ss_dssp CCEEEEETTTTEEEEEET-----TEEEEEETTTTEEEEEECC----TTCCTTCEECTTSSEEEE-EETTEEEEEECBCTT
T ss_pred CceeEEECCCCeEEEEEC-----CEEEEEECCCCceEEccCC----cccccCCcCCCCCCEEEE-EECCeEEEEecCccc
Confidence 5888999975 4433322 3567899999977553322 22222222 22456666 4678999999998
Q ss_pred ---cceeee
Q 020609 310 ---SGCLEL 315 (323)
Q Consensus 310 ---~~l~ev 315 (323)
.+.+.+
T Consensus 153 ~~~g~~~~~ 161 (706)
T 2z3z_A 153 EGMSRAIAV 161 (706)
T ss_dssp SCCCCCEES
T ss_pred ccCCCcEEe
Confidence 666544
No 165
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=64.68 E-value=81 Score=28.45 Aligned_cols=192 Identities=11% Similarity=0.210 Sum_probs=102.4
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
..+|.-+-+. ..+++.-...|....||. +++.+..+.. +..-|+++-++.....|+++| .|. .++.....
T Consensus 57 ~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~---~d~--~~~~~~~~- 128 (577)
T 2ymu_A 57 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS---DDK--TVKLWNRN- 128 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--CEEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEEC-CCCCEEEEEECCCCCEEEEEc---CCC--ceeecccc-
Confidence 4556666554 335666667788999995 7888888875 456789999999888777644 222 12111110
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEE-EEecccceeeEEEcC-CEEE
Q 020609 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKNVQEIKISP-GIML 247 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~Pg---FVEFDdvN~kilty~aq~~~YrVfdlknYs~L-YsIsde~VqEIkIS~-Giml 247 (323)
+ ...... ..+++ -+.|. .+++.++....++..++|+....... ..-....+..+..+| |-.+
T Consensus 129 -----~-----~~~~~~--~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (577)
T 2ymu_A 129 -----G-----QLLQTL--TGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI 195 (577)
T ss_dssp -----C-----CEEEEE--CCCSSCEEEEEEC-TTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred -----c-----ceeeec--cCCCCceeeeeee-cCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEE
Confidence 0 000000 01111 12232 34556666778889999997765532 223334455555553 2222
Q ss_pred EEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEeccccceee
Q 020609 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
+.- ..... +++.+ .+|+.+..+. .+...+.-+.. =+..|+.--++..+++||.....+..
T Consensus 196 ~~~-~~d~~--v~~w~-~~~~~~~~~~---~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~ 257 (577)
T 2ymu_A 196 ASA-SDDKT--VKLWN-RNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 257 (577)
T ss_dssp EEE-ETTSE--EEEEC-TTSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred EEE-cCCCE--EEEEe-CCCcEEEEEe---cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE
Confidence 222 11222 34455 3566655443 12333322221 13456666788899999975544433
No 166
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=64.50 E-value=4.6 Score=36.39 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=78.6
Q ss_pred ccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCC
Q 020609 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (323)
Q Consensus 104 a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g 183 (323)
..+.|++-+..|.-.|+|..||+.+-.+.. +++..+-+... +.+++++ +.+ ..|.|-- ..-|+.--.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~--g~~~v~~---s~d-g~l~a~d-----~~tG~~~w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE--EPAFLPD---PND-GSLYTLG-----SKNNEGLTK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEEC---TTT-CCEEEC----------CCSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC--CCEEEEe---CCC-CEEEEEE-----CCCCceeee
Confidence 567788888889999999999999887766 45544444322 3344421 222 2333321 122221000
Q ss_pred Ccceeec--ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc--CCEEEEEEecCCCeeeE
Q 020609 184 FALFESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPL 259 (323)
Q Consensus 184 ~~LFe~~--~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS--~Gimll~~q~~~~~iPl 259 (323)
.+ +... .-..|-+. .++++.+ -..++....||.++=+.+.+...... +..+ ++.+++-.. ---+
T Consensus 75 ~~-~~~~~~~~~sp~~~----~~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p~~~~v~~~~~----dg~v 142 (369)
T 2hz6_A 75 LP-FTIPELVQASPCRS----SDGILYM-GKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPSTSLLYLGRT----EYTI 142 (369)
T ss_dssp CS-CCHHHHHTTCSCC---------CCC-CEEEEEEEEECCC------------------------EEEEEE----EEEE
T ss_pred ee-ccCccccccCceEe----cCCEEEE-EeCCCEEEEEECCCCcEEEEecCCCc--ccccccCCEEEEEec----CCEE
Confidence 00 0000 01112210 1222222 11234445555554444444433221 2223 344332211 1236
Q ss_pred EEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEecccccee
Q 020609 260 KILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 260 kIlsIedG~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
..++..||+.+-.+..- ....+-+-. .....+++-..+..|.+||..+.++.
T Consensus 143 ~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp ECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred EEEECCCCCEEEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 77888999988766521 111111111 12367888888899999999887654
No 167
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=62.57 E-value=55 Score=25.76 Aligned_cols=182 Identities=11% Similarity=0.033 Sum_probs=90.1
Q ss_pred ccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhh-CCCCCCCcceeecccC
Q 020609 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLK 193 (323)
Q Consensus 115 G~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~-Gk~~~g~~LFe~~~L~ 193 (323)
|.-.+||..+++...+.. +...|.++-++.....|++.+ +. +.+.. ++.. |++ ..++....-.
T Consensus 22 ~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~----~~----~i~~~---d~~~~~~~---~~~~~~~~~~ 85 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS----EG----LLYRL---SLAGDPSP---EKVDTGFATI 85 (297)
T ss_dssp EEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE----TT----EEEEE---ESSSCCSC---EECCCTTCCC
T ss_pred eeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc----CC----eEEEE---eCCCCCCc---eEeccccccc
Confidence 344566766777665554 345677888887766665532 32 22222 2222 222 1222221112
Q ss_pred CCCeEEecCCCceEEEEec--CCCeEEEEecc--CcEEEEEe-cccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecC
Q 020609 194 WPGFVEFDDVNGKVLTYSA--QDSIYKVFDLK--NYTMLYSI-SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 194 ~PgFVEFDdvN~kilty~a--q~~~YrVfdlk--nYs~LYsI-sde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG 267 (323)
.+.-+.|.. +|+.+++.. .++..++|.+. +-. +..+ ....+..+.++ +|-.|++.......+-+-.+++.+|
T Consensus 86 ~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 86 CNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp BCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred cccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 233456665 566666655 34566777653 322 2333 23346667787 4554444444445555555556666
Q ss_pred ceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEecc--ccceeeec
Q 020609 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDES--NSGCLELS 316 (323)
Q Consensus 268 ~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~--~~~l~ev~ 316 (323)
+...-..+. ..-..+.|- .-+.+|++-. .+..++||++. ..++..+.
T Consensus 164 ~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 164 VETRLTHGE-GRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp CEEECCCSS-SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred cceEcccCC-CccccceEC-CCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 654321110 011122221 2355677665 57889999875 44444443
No 168
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=60.07 E-value=1.5 Score=36.60 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=43.4
Q ss_pred CcEEEEEecccceee--EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 224 NYTMLYSISDKNVQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 224 nYs~LYsIsde~VqE--IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
+-++++.++-+.+.+ +.+.+|.++.+.. +|..|.++.+++.+.+|||.|. -+.+.|
T Consensus 85 ~~~~v~~v~~~~f~~~~~~~~~G~~~~~~~-----~~~~V~~v~~~~v~vD~NHPLA-G~~L~F 142 (151)
T 1ix5_A 85 NEMLIQKIPRDAFKEADFEPEEGMVILAEG-----IPATITEVTDNEVTLDFNHELA-GKDLVF 142 (151)
T ss_dssp CSTTBCCEETHHHHTSTTCCCTTEEEESSS-----CEEEEEEEETTEEEEECCCSST-TCCEEE
T ss_pred CccEEEEEEHHHcCccCCcccccCEEEECC-----eEEEEEEEcCCEEEEeCCCCCC-CCeEEE
Confidence 445777777777764 6788998854322 8999999999999999999987 555554
No 169
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=59.95 E-value=82 Score=26.91 Aligned_cols=195 Identities=11% Similarity=0.107 Sum_probs=102.5
Q ss_pred cceeEEeec--cchhhhhhccccceeeecc-cc---cEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeee
Q 020609 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRE-TN---QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (323)
Q Consensus 96 S~V~EIv~a--~diI~aL~~sG~c~af~r~-tn---~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (323)
..|.-+-+. ..+++.-...|....||.. ++ +.+..+. .+..-|.++-++.....|++.| .+ ..++.--
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s----~D-~~i~iW~ 181 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEALLASSS----YD-DTVRIWK 181 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSSSSEEEEEE----TT-SCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCCCCEEEEEc----CC-CeEEEEE
Confidence 445555544 3356666667888899873 22 3344444 4556788999988777666543 22 2233221
Q ss_pred eehhhhhhCCCCCCCcceeecccCCCCe---EEecCCC-ceEEEEecCCCeEEEEeccCc--------EEEEEec---cc
Q 020609 170 TRIEYIRRGKPDAGFALFESESLKWPGF---VEFDDVN-GKVLTYSAQDSIYKVFDLKNY--------TMLYSIS---DK 234 (323)
Q Consensus 170 ~~i~~i~~Gk~~~g~~LFe~~~L~~PgF---VEFDdvN-~kilty~aq~~~YrVfdlknY--------s~LYsIs---de 234 (323)
. ..+.. .++. ..-.|.+. +.|+..+ +..++-...|+..|+||+.+- .++..+. ..
T Consensus 182 ~-----~~~~~---~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 182 D-----YDDDW---ECVA--VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp E-----ETTEE---EEEE--EECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred C-----CCCCe---eEEE--EccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 1 11100 0000 01123333 4566553 556666678999999999764 4555554 34
Q ss_pred ceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeec-cccCCc---chhhhhccceeEE-EecCCceeEEeccc
Q 020609 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL-LHRNKK---VDFIEQFNEKLLV-KQENENLQILDESN 309 (323)
Q Consensus 235 ~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~-L~~sk~---iqFiE~f~EkLLI-KQE~~~LqI~Dl~~ 309 (323)
.|..+..+++-+++. -...+. ++|.+..+|+........ -|.... +.|...-+.++|+ ==.|..++|||+..
T Consensus 252 ~v~~v~~s~~~~l~s-~~~dg~--v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 252 QVYNVAWGFNGLIAS-VGADGV--LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEECTTSCEEE-EETTSC--EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEcCCCEEEE-EeCCCE--EEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 677888886654333 333443 477888888531111111 122213 3333221344444 45889999999864
No 170
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=56.45 E-value=97 Score=26.65 Aligned_cols=147 Identities=12% Similarity=0.051 Sum_probs=81.1
Q ss_pred hccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCccee--e
Q 020609 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE--S 189 (323)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe--~ 189 (323)
+..+.-.+||+ +|+.+=.+......-+++.=...+.+.|+.-+. ++ . ++..++ ..||.-..+++=. .
T Consensus 53 s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~---~~-~--~v~~vd----~~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 53 SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCG---HP-S--TILEVN----MKGEVLSKTEFETGIE 121 (276)
T ss_dssp ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEES---TT-E--EEEEEC----TTSCEEEEEEECCSCS
T ss_pred eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecC---CC-C--EEEEEe----CCCCEEEEEeccCCCC
Confidence 44566788999 899888777653334666666666666655331 01 1 112221 1333210011000 1
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-ceee-EEEcCCEEEEEEecCCCeeeEEEEEeecC
Q 020609 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQE-IKISPGIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 190 ~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde-~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG 267 (323)
....+|..+-++. +|.++..+..++...+||.+ =+.+.+.... .... ..+.+|-+++.-... + -+..++.+||
T Consensus 122 ~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~-~--~v~~~d~~tG 196 (276)
T 3no2_A 122 RPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDA-H--CFVQLNLESN 196 (276)
T ss_dssp SGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTT-S--EEEEECTTTC
T ss_pred cccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCC-C--eEEEEeCcCC
Confidence 1234566666544 66666666667777777776 5666665532 2222 334466665443332 2 3788999999
Q ss_pred ceeeeee
Q 020609 268 TVLKSFN 274 (323)
Q Consensus 268 ~~l~~~~ 274 (323)
+.+-++.
T Consensus 197 ~~~w~~~ 203 (276)
T 3no2_A 197 RIVRRVN 203 (276)
T ss_dssp CEEEEEE
T ss_pred cEEEEec
Confidence 9998886
No 171
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=56.04 E-value=1.1e+02 Score=27.37 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=73.5
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEE-cCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCC
Q 020609 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI-SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (323)
Q Consensus 203 vN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkI-S~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk 281 (323)
.++++-.-.-+++.--|||.++.+.+=+|+-.. .-.=+ .+|-.|.+.+. .+. +.++|-+|+++++++.--. ..+
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdg-s~~--l~~iDp~t~~~~~~I~V~~-~g~ 147 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDG-TAV--IRKLDPDTLQQVGSIKVTA-GGR 147 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECS-SSE--EEEECTTTCCEEEEEECEE-TTE
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECC-CCe--EEEEeCCCCeEEEEEEEcc-CCc
Confidence 367887777889999999999999888877432 11112 23444445555 343 6899999999999876321 233
Q ss_pred cchh---hhhccceeEEEe-cCCceeEEeccccceeee
Q 020609 282 KVDF---IEQFNEKLLVKQ-ENENLQILDESNSGCLEL 315 (323)
Q Consensus 282 ~iqF---iE~f~EkLLIKQ-E~~~LqI~Dl~~~~l~ev 315 (323)
++.+ ||.-+.+|++-- ....+.++|..+.++++.
T Consensus 148 ~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 148 PLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp ECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred ccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEE
Confidence 4333 345577888876 566889999999887654
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=55.95 E-value=1.2e+02 Score=29.66 Aligned_cols=108 Identities=11% Similarity=0.158 Sum_probs=75.7
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEc-CCEEEEEEecCCCeeeEEEEEee--cCceeeeeee
Q 020609 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE--DGTVLKSFNH 275 (323)
Q Consensus 200 FDdvN~kilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIe--dG~~l~~~~~ 275 (323)
.| ..+.++.-+..++...|||..+.+.+-.|. ....+.+.+| +|-.|++..... -+.++|+. +++.+..+..
T Consensus 163 ~d-~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg---~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 163 WD-LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDG---KVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CC-GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS---EEEEEETTSSSCCEEEEEEC
T ss_pred cC-CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCC---eEEEEECCCCCCcEeEEEec
Confidence 44 356777778889999999999999998885 3467899999 466666655432 47888985 8888876542
Q ss_pred ccccCCcchhhhhc------cceeEEEecC-CceeEEeccccceeee
Q 020609 276 LLHRNKKVDFIEQF------NEKLLVKQEN-ENLQILDESNSGCLEL 315 (323)
Q Consensus 276 ~L~~sk~iqFiE~f------~EkLLIKQE~-~~LqI~Dl~~~~l~ev 315 (323)
.....-+... +.++++=-+. ..+.|+|..+.++...
T Consensus 239 ----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~ 281 (567)
T 1qks_A 239 ----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 281 (567)
T ss_dssp ----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred ----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 1122223333 5577776654 8889999988877653
No 173
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=55.64 E-value=4 Score=34.60 Aligned_cols=57 Identities=33% Similarity=0.442 Sum_probs=44.6
Q ss_pred cCcEEEEEecccceee--EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh
Q 020609 223 KNYTMLYSISDKNVQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (323)
Q Consensus 223 knYs~LYsIsde~VqE--IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF 285 (323)
++-+++..++.+.+.+ +.+.+|.++.+-.+ +..|..+.+++++.+|||.|. -+.+.|
T Consensus 83 ~~~~~V~~v~~~~f~~~~~~~~~G~~~~~~~~-----~~~V~~v~~~~V~vD~NHPLA-G~~L~F 141 (157)
T 3pr9_A 83 RDPSKIKLIPLSEFTKRGIKPIKGLTITIDGI-----PGKIVSINSGRVLVDFNHELA-GKEVKY 141 (157)
T ss_dssp CCGGGEEEEEHHHHHHTTCCCCTTCEEEETTE-----EEEEEEEETTEEEEECSCTTT-TCCEEE
T ss_pred CChHhEEEcCHHHCCcccCCcCCCcEEEecCC-----CeEEEEEcCCEEEEECCCccC-CCeEEE
Confidence 4556888888888873 77788988755222 689999999999999999998 666665
No 174
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=54.86 E-value=1.1e+02 Score=31.09 Aligned_cols=114 Identities=7% Similarity=0.031 Sum_probs=66.5
Q ss_pred eEEecCCCceEEEEecCCCeEE-EEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeeEEEEEeecCceeee
Q 020609 197 FVEFDDVNGKVLTYSAQDSIYK-VFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 197 FVEFDdvN~kilty~aq~~~Yr-VfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (323)
.+.|. +|+-++|...++... +||+.+-+. -.+. ...+..+.+|| |-.|++..... .+.++++++|+...-
T Consensus 342 ~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~---~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 342 RRGGD--TKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRF---EIMTVDLETGKPTVI 415 (1045)
T ss_dssp EECSS--SEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTS---EEEEEETTTCCEEEE
T ss_pred eeeEc--CCCeEEEEECCCceEEEEECCCCCc-eEecCCccceeeeEECCCCCEEEEECCCC---eEEEEECCCCceEEe
Confidence 35565 677777766665555 778766432 2332 35678888884 55555443332 577999999998765
Q ss_pred eeeccccCCcchhhhhccceeEEEecC----------CceeEEeccccceeeecc
Q 020609 273 FNHLLHRNKKVDFIEQFNEKLLVKQEN----------ENLQILDESNSGCLELSR 317 (323)
Q Consensus 273 ~~~~L~~sk~iqFiE~f~EkLLIKQE~----------~~LqI~Dl~~~~l~ev~~ 317 (323)
+...-..-..+.|- .=+.+|+.-..+ ..|.+||+.+.++..+..
T Consensus 416 ~~~~~~~v~~~~~S-pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~ 469 (1045)
T 1k32_A 416 ERSREAMITDFTIS-DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 469 (1045)
T ss_dssp EECSSSCCCCEEEC-TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred ccCCCCCccceEEC-CCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeC
Confidence 42101111223332 124456554332 489999999887665543
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=54.46 E-value=68 Score=26.84 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=41.6
Q ss_pred CceEEEEecC---------CCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCC--CeeeEEEEEeecCceee
Q 020609 204 NGKVLTYSAQ---------DSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKAS--GHVPLKILSIEDGTVLK 271 (323)
Q Consensus 204 N~kilty~aq---------~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~--~~iPlkIlsIedG~~l~ 271 (323)
+|+-++|... ++...+||+.+-+. ..+ ..+..+.+| +|-.|++..... ...-+.++++.+|+...
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~ 99 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK 99 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE
Confidence 5777777532 45667888877542 233 567889999 454444443322 45568888888888655
Q ss_pred e
Q 020609 272 S 272 (323)
Q Consensus 272 ~ 272 (323)
-
T Consensus 100 l 100 (347)
T 2gop_A 100 I 100 (347)
T ss_dssp E
T ss_pred E
Confidence 3
No 176
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=52.65 E-value=88 Score=28.95 Aligned_cols=108 Identities=12% Similarity=0.174 Sum_probs=59.5
Q ss_pred CCceEEEEecC-CCeEEEEeccCcEEEEEecc---cceeeEEEcCCEEEEEEec--CCCeeeEEEEEe-ecCceeeeeee
Q 020609 203 VNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD---KNVQEIKISPGIMLLIFTK--ASGHVPLKILSI-EDGTVLKSFNH 275 (323)
Q Consensus 203 vN~kilty~aq-~~~YrVfdlknYs~LYsIsd---e~VqEIkIS~Gimll~~q~--~~~~iPlkIlsI-edG~~l~~~~~ 275 (323)
.+|+-|+|... ++..++|++.+-+. -.+.. ..+..+..||+-+++.... .....-+-++++ .+|+.. .+
T Consensus 31 ~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l-- 106 (582)
T 3o4h_A 31 VDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RL-- 106 (582)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-EC--
T ss_pred CCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cc--
Confidence 36788888766 99999999976553 34443 2577788888855444433 223333444444 133332 11
Q ss_pred ccccCCcchhhh--hccc-eeEEEecCCceeEEeccccceeeec
Q 020609 276 LLHRNKKVDFIE--QFNE-KLLVKQENENLQILDESNSGCLELS 316 (323)
Q Consensus 276 ~L~~sk~iqFiE--~f~E-kLLIKQE~~~LqI~Dl~~~~l~ev~ 316 (323)
.........- .-+. .+++--....+.|||+.+.++..+.
T Consensus 107 --~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~ 148 (582)
T 3o4h_A 107 --EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA 148 (582)
T ss_dssp --TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred --cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee
Confidence 1111111111 1122 2455556667779999988776553
No 177
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=52.18 E-value=1.2e+02 Score=26.26 Aligned_cols=177 Identities=15% Similarity=0.173 Sum_probs=93.1
Q ss_pred eccchhhhhhccccceeeecccccEEEEEeCCCCc----------eEEEEEeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020609 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (323)
Q Consensus 103 ~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dE----------vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i 172 (323)
..++.|++-+..|.-.+||..||+.+-........ +.-+.... ++.+.+.+ + + ..|.|-..
T Consensus 186 ~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~-~---~-g~l~~~d~-- 256 (376)
T 3q7m_A 186 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALA-Y---N-GNLTALDL-- 256 (376)
T ss_dssp EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEEC-T---T-SCEEEEET--
T ss_pred EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEe-c---C-cEEEEEEC--
Confidence 34677777777888899999999987766542110 00111111 23444322 1 1 23433321
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec---ccceeeEEEcCCEEEEE
Q 020609 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISPGIMLLI 249 (323)
Q Consensus 173 ~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIs---de~VqEIkIS~Gimll~ 249 (323)
..| ..+.+... +++...-..++++..-+ .++....||.++-+.+++.. ...+...-+.+|.+++.
T Consensus 257 ---~tG-----~~~w~~~~---~~~~~~~~~~~~l~~~~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~ 324 (376)
T 3q7m_A 257 ---RSG-----QIMWKREL---GSVNDFIVDGNRIYLVD-QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVG 324 (376)
T ss_dssp ---TTC-----CEEEEECC---CCEEEEEEETTEEEEEE-TTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEE
T ss_pred ---CCC-----cEEeeccC---CCCCCceEECCEEEEEc-CCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEE
Confidence 222 23333221 11111111244444433 34455666777666666654 23444555667766443
Q ss_pred EecCCCeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEe
Q 020609 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (323)
Q Consensus 250 ~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~D 306 (323)
-. .. -+..++.+||+.+..+.. +...-.--....+..|+|--++..|.+||
T Consensus 325 ~~--~g--~l~~~d~~tG~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 325 DS--EG--YLHWINVEDGRFVAQQKV--DSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CT--TS--EEEEEETTTCCEEEEEEC--CTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred eC--CC--eEEEEECCCCcEEEEEec--CCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 22 12 477899999999887653 11111111223578999998888898887
No 178
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=51.71 E-value=1.2e+02 Score=28.75 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=67.0
Q ss_pred CCCeEEecCCCceEEEEecC-CC-----eEEEEeccCcEEEEEecc--------------------------cceeeEEE
Q 020609 194 WPGFVEFDDVNGKVLTYSAQ-DS-----IYKVFDLKNYTMLYSISD--------------------------KNVQEIKI 241 (323)
Q Consensus 194 ~PgFVEFDdvN~kilty~aq-~~-----~YrVfdlknYs~LYsIsd--------------------------e~VqEIkI 241 (323)
.|-.+.|.. +|+-|++... ++ ..++||+.+-+..-.+.. ..+..+.+
T Consensus 38 ~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 455566654 5666666555 77 899999998775444432 23677888
Q ss_pred c-CCEEEEEEecCCCeeeEEEEEeecC---ceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEeccccceeee
Q 020609 242 S-PGIMLLIFTKASGHVPLKILSIEDG---TVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDESNSGCLEL 315 (323)
Q Consensus 242 S-~Gimll~~q~~~~~iPlkIlsIedG---~~l~~~~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~l~ev 315 (323)
| ||-.|++... --+.++++.+| +... +. .....+..+. .=+.+|..-. +..|.+||+.+.+...+
T Consensus 117 SpDg~~l~~~~~----~~i~~~d~~~~~~~~~~~-l~---~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 117 SPDAQRLLFPLG----GELYLYDLKQEGKAAVRQ-LT---HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp CTTSSEEEEEET----TEEEEEESSSCSTTSCCB-CC---CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CCCCCEEEEEeC----CcEEEEECCCCCcceEEE-cc---cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 8 4555444443 34678899998 4332 21 1112221111 1244555554 45899999998877665
Q ss_pred c
Q 020609 316 S 316 (323)
Q Consensus 316 ~ 316 (323)
.
T Consensus 188 ~ 188 (741)
T 2ecf_A 188 T 188 (741)
T ss_dssp C
T ss_pred c
Confidence 4
No 179
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=50.40 E-value=43 Score=28.19 Aligned_cols=95 Identities=8% Similarity=0.089 Sum_probs=61.3
Q ss_pred eeehhhhhhCCCCCCCcceeecccCCCCeEEecC-CCceEEEEecCCCe------EEEEeccCcEEEEEecccceeeEEE
Q 020609 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSI------YKVFDLKNYTMLYSISDKNVQEIKI 241 (323)
Q Consensus 169 ~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDd-vN~kilty~aq~~~------YrVfdlknYs~LYsIsde~VqEIkI 241 (323)
.++|++|. .+.+ .+.....|++.=|. .+-+|+++++.++. -.||+.+....+|.|.=++=.+|++
T Consensus 18 ~~~I~el~-~~~~-------~~~~~~~G~~~~~~~~~~~V~s~d~~~gk~~~~~v~~v~~~~~~~~~~~I~t~~G~~I~~ 89 (185)
T 2lcj_A 18 KITLRELY-ELFE-------DERYENMVYVRKKPKREIKVYSIDLETGKVVLTDIEDVIKAPATDHLIRFELEDGRSFET 89 (185)
T ss_dssp EEEHHHHG-GGBC-------CEEEETTEEEECSBSSCEEEEEEETTTTEEEEEEEEEEEEEECCSCEEEEEETTSCEEEE
T ss_pred EEEHHHHH-Hhhh-------cccccccCeEEeccCCCcEEEEEECCCCcEEEEEeeeEEEcCCCceEEEEEECCCCEEEE
Confidence 36788886 3322 22223344432222 24478888876654 3789988777899998888889999
Q ss_pred cCCEEEEEEecCCCeeeEEEEEeecCceeee
Q 020609 242 SPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 242 S~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (323)
+|.|-+++... ........-.+.-|..+.-
T Consensus 90 T~~H~~~v~~~-g~~~~~~A~eLk~GD~v~v 119 (185)
T 2lcj_A 90 TVDHPVLVYEN-GRFIEKRAFEVKEGDKVLV 119 (185)
T ss_dssp CSSSEEEEEET-TEEEEEEGGGCCTTCEEEE
T ss_pred CCCCEEEEecC-CeEEEEEHHHCCCCCEEEE
Confidence 99999888874 3344555555556666653
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=46.89 E-value=64 Score=31.43 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred eeeehhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEE------
Q 020609 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI------ 241 (323)
Q Consensus 168 r~~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkI------ 241 (323)
+.++++++..|.... +...+.|- .+|+.++.+ ++..++||+++=++.--+.....+...+
T Consensus 3 ~~~tl~~~~~~~~~~-----~~~~~~w~-------~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 3 KTYTLTDYLKNTYRL-----KLYSLRWI-------SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp EECCHHHHHHTCSCC-----CCCCEEEC-------SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE
T ss_pred CceeHHHHhcCcccc-----cccccEEC-------CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceE
Q ss_pred -c-CCEEEEEEecCCCee------eEEEEEeecCceeeeeeeccccCCcchhhhhcc-ceeEEEecCCceeEEeccccce
Q 020609 242 -S-PGIMLLIFTKASGHV------PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDESNSGC 312 (323)
Q Consensus 242 -S-~Gimll~~q~~~~~i------PlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~-EkLLIKQE~~~LqI~Dl~~~~l 312 (323)
| ||-.|++......+. -+.|+++++|+... +......+.+..-.- .+.|.=-.+.+|.+||+.+.+.
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Q ss_pred eeeccc
Q 020609 313 LELSRR 318 (323)
Q Consensus 313 ~ev~~~ 318 (323)
+.+...
T Consensus 145 ~~lt~~ 150 (740)
T 4a5s_A 145 YRITWT 150 (740)
T ss_dssp EECCSC
T ss_pred EEEcCC
No 181
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=46.42 E-value=1.2e+02 Score=24.92 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=55.9
Q ss_pred ecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcCCEEEEEEecCCCeeeEEEEEeecC
Q 020609 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (323)
Q Consensus 189 ~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG 267 (323)
+..+.+|--+-+|..++++...+...+...+||+.+-...-.++. ..-..|-+.+|.+...-...+ . +..++.++|
T Consensus 163 ~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~-~--v~~~d~~~g 239 (267)
T 1npe_A 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTN-S--VIAMDLAIS 239 (267)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTT-E--EEEEETTTT
T ss_pred ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCC-e--EEEEeCCCC
Confidence 345789999999999999999999999999999986442222221 233455555665544333333 3 367788888
Q ss_pred ceeeeee
Q 020609 268 TVLKSFN 274 (323)
Q Consensus 268 ~~l~~~~ 274 (323)
+.+..+.
T Consensus 240 ~~~~~i~ 246 (267)
T 1npe_A 240 KEMDTFH 246 (267)
T ss_dssp EEEEEEC
T ss_pred CceEEEc
Confidence 8877654
No 182
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=45.57 E-value=2.6e+02 Score=28.45 Aligned_cols=199 Identities=12% Similarity=0.022 Sum_probs=98.1
Q ss_pred ceeEEeecc--chhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCC---ceeeeeeee
Q 020609 97 KIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNF---SSLRCRSTR 171 (323)
Q Consensus 97 ~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~f---S~LkCr~~~ 171 (323)
.+..+.... ..|+.....|....+|..|++....+.. +...|.++-++.....|++.+.-.-.++ ..-..+..
T Consensus 380 ~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~- 457 (1045)
T 1k32_A 380 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY- 457 (1045)
T ss_dssp SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE-
T ss_pred ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE-
Confidence 344444432 2444445556667778878877766643 3334566777777777766443210000 01122222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEE------------------------
Q 020609 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM------------------------ 227 (323)
Q Consensus 172 i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~------------------------ 227 (323)
++..|++ ..|.. ...++.-+.|.. +|+.|++...++..++|+..+...
T Consensus 458 --d~~~g~~---~~l~~--~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1045)
T 1k32_A 458 --DMEGRKI---FAATT--ENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 529 (1045)
T ss_dssp --ETTTTEE---EECSC--SSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred --ECCCCcE---EEeeC--CCcccCCceEcC-CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccC
Confidence 2222221 11111 111112244543 566566666666666666543322
Q ss_pred -------------------EEEe--cccceeeEEEcCCEEEEEE-----------ecCCCeeeEEEEEeecCceeeeeee
Q 020609 228 -------------------LYSI--SDKNVQEIKISPGIMLLIF-----------TKASGHVPLKILSIEDGTVLKSFNH 275 (323)
Q Consensus 228 -------------------LYsI--sde~VqEIkIS~Gimll~~-----------q~~~~~iPlkIlsIedG~~l~~~~~ 275 (323)
+..+ ....+..+.++|+--+++. .......-+.++++.+|+...-...
T Consensus 530 ~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 609 (1045)
T 1k32_A 530 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN 609 (1045)
T ss_dssp CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEE
T ss_pred cCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecC
Confidence 1222 1234566777755433332 1223344567788888875432210
Q ss_pred ccccCCcchhhhhccceeEEEecCCceeEEeccccc
Q 020609 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSG 311 (323)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (323)
-..+. +-.=+.+|++-.++ .+.+||+.+.+
T Consensus 610 ----v~~~~-~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 610 ----LTDLR-LSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp ----EEEEE-ECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ----cceEE-ECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 01111 12236688888777 89999998876
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=45.42 E-value=1.2e+02 Score=24.68 Aligned_cols=119 Identities=11% Similarity=0.271 Sum_probs=71.7
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--------cceeeEEE--cCCEEEEEEecCCCeeeE
Q 020609 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KNVQEIKI--SPGIMLLIFTKASGHVPL 259 (323)
Q Consensus 190 ~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsd--------e~VqEIkI--S~Gimll~~q~~~~~iPl 259 (323)
..+..|--+-+|. +|+++..+..++...+||..+ ..+..+.. .....|.+ .+|.+++.-....+ -+
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~--~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH--QI 102 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC--EE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC--EE
Confidence 4567899999986 467888888888999999874 45555542 35778888 36666544322122 25
Q ss_pred EEEEeecCceeeeeeec-cccCCcchhhhhccceeEEEe-cCCceeEEeccccceeee
Q 020609 260 KILSIEDGTVLKSFNHL-LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDESNSGCLEL 315 (323)
Q Consensus 260 kIlsIedG~~l~~~~~~-L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~~~l~ev 315 (323)
.+++ .+|+.+..+... +..-..+.|-. ..+|+|-. .+..+.+||.....+..+
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~g~~~~~~ 157 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQNGNVLHKF 157 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCCCCEEEEe
Confidence 6677 688877765421 01111122211 34577764 456788898655444443
No 184
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=45.29 E-value=1.4e+02 Score=25.29 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=53.3
Q ss_pred CCCeEEecCCCceEEEEecC-CCeEEEEecc----CcEEEEEec-ccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeec
Q 020609 194 WPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLK----NYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (323)
Q Consensus 194 ~PgFVEFDdvN~kilty~aq-~~~YrVfdlk----nYs~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIed 266 (323)
.|.-+.|+.-...+.+.+.. ++..+||++. ..+.+-.++ ...+..+.+| +|-.|++.....+.+-+--++.++
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 34578888654445455555 6899999995 455666555 4567788898 466777777666766555567788
Q ss_pred Cceee
Q 020609 267 GTVLK 271 (323)
Q Consensus 267 G~~l~ 271 (323)
|+...
T Consensus 340 g~~~~ 344 (361)
T 3scy_A 340 GLLTD 344 (361)
T ss_dssp CCEEE
T ss_pred CcEee
Confidence 88665
No 185
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=44.78 E-value=78 Score=26.85 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=36.9
Q ss_pred CCceEEEEecC-CCe--EEEEeccCcEEEEEecccc---eeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeee
Q 020609 203 VNGKVLTYSAQ-DSI--YKVFDLKNYTMLYSISDKN---VQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 203 vN~kilty~aq-~~~--YrVfdlknYs~LYsIsde~---VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (323)
.+|+-|+|... ++. ..+||+.+-+.. .+.+.. +....+| +|-.|++..... -+.++++++|+...-
T Consensus 45 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 45 RDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGR---NLMRVDLATLEENVV 117 (388)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTT---EEEEEETTTCCEEEE
T ss_pred CCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCC---eEEEEECCCCcceee
Confidence 35766666665 664 556688776643 333222 2245677 454444443322 466788888887653
No 186
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=43.81 E-value=1.8e+02 Score=26.10 Aligned_cols=184 Identities=7% Similarity=0.025 Sum_probs=97.2
Q ss_pred cceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCC
Q 020609 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (323)
Q Consensus 116 ~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~P 195 (323)
....+|..|++.....+ ....+.++-++.....|++++. .|.-. +.+..+ +..|+. ..|.... ...
T Consensus 204 ~i~~~d~~tg~~~~l~~--~~~~~~~~~~spdg~~la~~~~--~~g~~--~i~~~d---~~~~~~---~~l~~~~--~~~ 269 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALS--KTGSL--NLYVMD---LASGQI---RQVTDGR--SNN 269 (415)
T ss_dssp EEEEEETTTCCEEEEEC--CSSCEEEEEECTTSSEEEEEEC--TTSSC--EEEEEE---TTTCCE---EECCCCS--SCE
T ss_pred EEEEEECCCCcEEEeec--CCCcccCEEEcCCCCEEEEEEe--cCCCc--eEEEEE---CCCCCE---EeCcCCC--Ccc
Confidence 45567777777654332 2346788888887777775332 22211 223332 222332 1222111 112
Q ss_pred CeEEecCCCceEEEEecC-CC--eEEEEeccCcEEEEEe--cccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCce
Q 020609 196 GFVEFDDVNGKVLTYSAQ-DS--IYKVFDLKNYTMLYSI--SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (323)
Q Consensus 196 gFVEFDdvN~kilty~aq-~~--~YrVfdlknYs~LYsI--sde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~ 269 (323)
.-+.|.. +|+-+++... ++ ...+||+.+-+. ..+ ....+..+.+| +|-.|++.....+..-+.++++++|+.
T Consensus 270 ~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 270 TEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred cceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 2345654 4665555444 45 455558776542 233 33467778887 455545444444456788999999987
Q ss_pred eeeeeeccccCCcchhhhhccceeEEEecCC---ceeEEeccccceeeeccc
Q 020609 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENE---NLQILDESNSGCLELSRR 318 (323)
Q Consensus 270 l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~---~LqI~Dl~~~~l~ev~~~ 318 (323)
..-..+ ..-..+.|- .=+..|+.--.+. .|.+||+....+..++..
T Consensus 348 ~~l~~~--~~~~~~~~s-pdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~ 396 (415)
T 2hqs_A 348 QVLSST--FLDETPSLA-PNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 396 (415)
T ss_dssp EECCCS--SSCEEEEEC-TTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred EEecCC--CCcCCeEEc-CCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence 431111 111112221 1245566655444 799999988877776644
No 187
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=43.62 E-value=1.1e+02 Score=29.15 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=74.1
Q ss_pred eehhhhhhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-----ceeeEEEc-C
Q 020609 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----NVQEIKIS-P 243 (323)
Q Consensus 170 ~~i~~i~~Gk~~~g~~LFe~~~L~~PgFVEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde-----~VqEIkIS-~ 243 (323)
+++++|-.++.... +. .| .|- .+|+++ |...++..++||+.+-+..--+... .+..+.+| |
T Consensus 4 ~~~~~~~~~~~~~~-----~~---~~---~~s-~dg~~~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD 70 (719)
T 1z68_A 4 LTLKDILNGTFSYK-----TF---FP---NWI-SGQEYL-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD 70 (719)
T ss_dssp CCHHHHHHTTTCCC-----CC---CC---EES-SSSEEE-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT
T ss_pred ccHHHHhcCcccCC-----CC---cc---EEC-CCCeEE-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC
Confidence 56778877764211 11 12 222 234544 4556899999999998866555433 27899999 5
Q ss_pred CEEEEEEecCC------CeeeEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceeeec
Q 020609 244 GIMLLIFTKAS------GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLELS 316 (323)
Q Consensus 244 Gimll~~q~~~------~~iPlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~ 316 (323)
|-.|++..... ..--+.|.++++|+.+..... -..-..+.| -.=+.+|..-. +.+|.+||+.+.+.+.+.
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~-SPDG~~la~~~-~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCW-SPVGSKLAYVY-QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEE-CSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceE-CCCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence 65555543311 124688999999987421111 000011111 01134455443 569999999887766543
No 188
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=43.10 E-value=2.2e+02 Score=26.80 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=40.4
Q ss_pred eEEEEeccCcEEEEEec--------ccceeeEEEc-CCEEEEE-EecCCCeeeEEEEEeecCceeeee
Q 020609 216 IYKVFDLKNYTMLYSIS--------DKNVQEIKIS-PGIMLLI-FTKASGHVPLKILSIEDGTVLKSF 273 (323)
Q Consensus 216 ~YrVfdlknYs~LYsIs--------de~VqEIkIS-~Gimll~-~q~~~~~iPlkIlsIedG~~l~~~ 273 (323)
..++||+.+=+.+..+. +..+..+..| ||-+|+. ........-+.++++.+|+...-+
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 67889988877555665 3457778888 4555433 345556677889999999876544
No 189
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=41.66 E-value=1.7e+02 Score=25.26 Aligned_cols=190 Identities=9% Similarity=0.062 Sum_probs=99.3
Q ss_pred ccccceeeecc-cccEEEEEe---CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCccee
Q 020609 113 QSGVCAAFCRE-TNQRICFLN---VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188 (323)
Q Consensus 113 ~sG~c~af~r~-tn~~iC~LN---~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe 188 (323)
..|...+|+.. +|+..-.+. .....-++++-++...+.|.+ +-. .+ .. .+..+++. .|++ .++-+
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~-~~~-~~--~~--v~~~~~~~--~g~~---~~~~~ 185 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS-ADL-TA--NK--LWTHRKLA--SGEV---ELVGS 185 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE-EET-TT--TE--EEEEEECT--TSCE---EEEEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE-EcC-CC--CE--EEEEEECC--CCCE---EEeee
Confidence 35666677764 355432222 123456788888877665543 311 11 12 22232221 2332 11111
Q ss_pred e--cc-cCCCCeEEecCCCceEEEEecCCCeEEEEecc--CcEE------EEEeccc------------ceeeEE-EcC-
Q 020609 189 S--ES-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTM------LYSISDK------------NVQEIK-ISP- 243 (323)
Q Consensus 189 ~--~~-L~~PgFVEFDdvN~kilty~aq~~~YrVfdlk--nYs~------LYsIsde------------~VqEIk-IS~- 243 (323)
- .. -.+|--+.|+.-...+.+.+..++...||++. +=++ +-.++.. .+.++. +||
T Consensus 186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd 265 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS 265 (365)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC
Confidence 0 01 34577788987555565555567899999875 2122 1123221 478899 984
Q ss_pred CEEEEEEecCCCe---eeEEEEEee-cCceeeeeeec-ccc---C----CcchhhhhccceeEEE-ecCCceeEEecccc
Q 020609 244 GIMLLIFTKASGH---VPLKILSIE-DGTVLKSFNHL-LHR---N----KKVDFIEQFNEKLLVK-QENENLQILDESNS 310 (323)
Q Consensus 244 Gimll~~q~~~~~---iPlkIlsIe-dG~~l~~~~~~-L~~---s----k~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~ 310 (323)
|-.|++.....+. =-+.++++. +|+...-.... .+. . .+-+| -+.+|++= |++..+++||+...
T Consensus 266 G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~---dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW---SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT---CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc---CCCEEEEEEcCCCeEEEEEEchh
Confidence 6555555544331 035788885 78754321111 011 1 12222 35677776 45689999999877
Q ss_pred ceeeec
Q 020609 311 GCLELS 316 (323)
Q Consensus 311 ~l~ev~ 316 (323)
.|..+.
T Consensus 343 ~l~~~~ 348 (365)
T 1jof_A 343 FLHRVA 348 (365)
T ss_dssp EEEEEE
T ss_pred hCceee
Confidence 776553
No 190
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=41.01 E-value=2.2e+02 Score=26.28 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=39.7
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEee
Q 020609 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 200 FDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIe 265 (323)
|+. +|+++.....++..++|++ . +.+- .....+..+.+|+|-+++...... -|-.|..+.
T Consensus 253 ~sp-dg~~~~~~~~~g~~~l~~~-g-~~~~-~~~~~v~~~~~sdg~~l~~~s~~~--~p~~l~~~d 312 (582)
T 3o4h_A 253 YLP-DGRLAVVARREGRSAVFID-G-ERVE-APQGNHGRVVLWRGKLVTSHTSLS--TPPRIVSLP 312 (582)
T ss_dssp ECT-TSCEEEEEEETTEEEEEET-T-EEEC-CCSSEEEEEEEETTEEEEEEEETT--EEEEEEEET
T ss_pred EcC-CCcEEEEEEcCCcEEEEEE-C-Ceec-cCCCceEEEEecCCEEEEEEcCCC--CCCeEEEEc
Confidence 664 4488777778999999999 2 2222 344678888899998876655443 344554444
No 191
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=40.18 E-value=11 Score=34.09 Aligned_cols=76 Identities=29% Similarity=0.459 Sum_probs=55.1
Q ss_pred cCcEEEEEecccceee--EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh---------------
Q 020609 223 KNYTMLYSISDKNVQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF--------------- 285 (323)
Q Consensus 223 knYs~LYsIsde~VqE--IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF--------------- 285 (323)
++-.++..++-+++.+ +.+.+|.++.+ +. -+..|.++.+++++.+|||.|. -+.+.|
T Consensus 83 ~~~~lv~~vp~~~f~~~~~~~~vG~~~~~-~~----~~g~V~~v~~~~V~vD~NHPLA-Gk~L~F~vev~~v~eat~eei 156 (231)
T 3prb_A 83 RDPSKIKLIPLSEFTKRGIKPIKGLTITI-DG----IPGKIVSINSGRVLVDFNHELA-GKEVKYRIKIEEVVDDKKNIV 156 (231)
T ss_dssp CCGGGEEEEETHHHHTTTCCCCTTCEEEE-TT----EEEEEEEEETTEEEEECSCTTT-TCCEEEEEEEEEECCSHHHHH
T ss_pred CChHHEEecCHHHCCcccCCCCCCcEEEe-cC----CCEEEEEEcCCEEEEeCCCccC-CCEEEEEEEEEEEecCCHHHH
Confidence 4556788888888873 77778988755 22 2689999999999999999998 666655
Q ss_pred ---hhhcc---ceeEEEecCCceeE
Q 020609 286 ---IEQFN---EKLLVKQENENLQI 304 (323)
Q Consensus 286 ---iE~f~---EkLLIKQE~~~LqI 304 (323)
++++- +++-++-+++.+.|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i 181 (231)
T 3prb_A 157 KEIVKMYVPRLSDVKVTIRNGTVKI 181 (231)
T ss_dssp HHHHHHHCTTCCCCEEEEETTEEEE
T ss_pred HHHHHHhcCCccceEEEEeCCeEEE
Confidence 33332 56667777776554
No 192
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=37.70 E-value=2.3e+02 Score=25.46 Aligned_cols=109 Identities=9% Similarity=0.010 Sum_probs=73.2
Q ss_pred EEecCCCceEEEEecC--CCeEEEEeccCcEEEEEec--cc-ceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceeee
Q 020609 198 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--DK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (323)
Q Consensus 198 VEFDdvN~kilty~aq--~~~YrVfdlknYs~LYsIs--de-~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (323)
++||+- |++..-+.+ ++..+++|+++-+.+=++. +. ...-|-+.++.+ .......+. +.++|.+|++.++.
T Consensus 26 l~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~l-yv~t~~~~~--v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 26 LVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKL-YQVVWLKNI--GFIYDRRTLSNIKN 101 (266)
T ss_dssp EEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEE-EEEETTCSE--EEEEETTTTEEEEE
T ss_pred EEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEE-EEEEecCCE--EEEEECCCCcEEEE
Confidence 678754 666555544 6899999999999887765 22 233466777654 333444555 56699999999998
Q ss_pred eeeccccCCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 273 ~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
+..- .....- +..=+..|++-.....|.++|..+.++.
T Consensus 102 i~~g--~~~g~g-lt~Dg~~l~vs~gs~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 102 FTHQ--MKDGWG-LATDGKILYGSDGTSILYEIDPHTFKLI 139 (266)
T ss_dssp EECC--SSSCCE-EEECSSSEEEECSSSEEEEECTTTCCEE
T ss_pred EECC--CCCeEE-EEECCCEEEEECCCCeEEEEECCCCcEE
Confidence 8642 111221 3333678888888888999999886643
No 193
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=34.22 E-value=1.2e+02 Score=24.73 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=32.9
Q ss_pred ceEEEEecCCC-----eEEEEeccC--cEEEEEecccceeeEEEcCCEEEEEEecCC
Q 020609 205 GKVLTYSAQDS-----IYKVFDLKN--YTMLYSISDKNVQEIKISPGIMLLIFTKAS 254 (323)
Q Consensus 205 ~kilty~aq~~-----~YrVfdlkn--Ys~LYsIsde~VqEIkIS~Gimll~~q~~~ 254 (323)
.+|++++++.. ...+++-.. -..+|.|.-++=+++.++|.|.+++.+...
T Consensus 25 D~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~g~~L~lTp~H~i~v~~~~~ 81 (145)
T 1at0_A 25 DRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPES 81 (145)
T ss_dssp CEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETTSCEEEECTTCEEEEEETTT
T ss_pred CEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECCCCEEEEeCCCEEEEecCCC
Confidence 35666665432 245565332 236778876655899999999988887754
No 194
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=32.23 E-value=2.5e+02 Score=27.82 Aligned_cols=129 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred cchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCC
Q 020609 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (323)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~ 184 (323)
.++|++....|.-.++|+.||+.+.-....+..- +..-|. ..+.
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w-----------------~~~~~~-------------------~~~~ 362 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSW-----------------TKGMDM-------------------KTGR 362 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS-----------------EEEEET-------------------TTTE
T ss_pred EEEEEEECCCCeEEEEECCCCCEecccccccccc-----------------ccccCc-------------------cCCC
Q ss_pred cceeeccc----------CCCCe--------EEecCCCceEEEEecC---------------------------------
Q 020609 185 ALFESESL----------KWPGF--------VEFDDVNGKVLTYSAQ--------------------------------- 213 (323)
Q Consensus 185 ~LFe~~~L----------~~PgF--------VEFDdvN~kilty~aq--------------------------------- 213 (323)
|+...... .+||+ +-||..++.+.+-..+
T Consensus 363 pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 363 PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Q ss_pred -----------CCeEEEEeccCcEEEEEecccceeeEEEcCCEEE----EEEecCCCeeeEEEEEeecCceeeeee
Q 020609 214 -----------DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML----LIFTKASGHVPLKILSIEDGTVLKSFN 274 (323)
Q Consensus 214 -----------~~~YrVfdlknYs~LYsIsde~VqEIkIS~Giml----l~~q~~~~~iPlkIlsIedG~~l~~~~ 274 (323)
++..+.||+++=+.+.++.... ..-.|.+. +++..+.+-. ++.+|.+||++|-++.
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~gt~dg~-l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT----IFNGGTLSTAGNLVFEGSADGR-VIAYAADTGEKLWEQP 513 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred cccCCCCCCCcceeEEEEECCCCCeEeEccCCC----CccCccceECCCEEEEECCCCc-EEEEECCCCccceeee
No 195
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=31.65 E-value=3.3e+02 Score=25.58 Aligned_cols=187 Identities=10% Similarity=0.166 Sum_probs=99.4
Q ss_pred ccceeeecccccEEEEEe-CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccC
Q 020609 115 GVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (323)
Q Consensus 115 G~c~af~r~tn~~iC~LN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~ 193 (323)
+....+|..+++.....- ..++.-+.++-++...+.|.+++.-... .....+..++ ..|+ ....+++...-.
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~v~~~d~---~~g~--~~~~~~~~~~~~ 307 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ--NECKVNAYDA---ETGR--FVRTLFVETDKH 307 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS--CEEEEEEEET---TTCC--EEEEEEEEECSS
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC--CeeEEEEEEC---CCCc--eeeEEEEccCCC
Confidence 345567777777554332 2456678999999888877775532111 2334444432 2221 012333322222
Q ss_pred CC---CeEEecC-CCceEEEEecCCCeEEEEecc-CcEEEEEecccc--eee-EEEcC-CEEEEEEecCCC--eeeEEEE
Q 020609 194 WP---GFVEFDD-VNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKN--VQE-IKISP-GIMLLIFTKASG--HVPLKIL 262 (323)
Q Consensus 194 ~P---gFVEFDd-vN~kilty~aq~~~YrVfdlk-nYs~LYsIsde~--VqE-IkIS~-Gimll~~q~~~~--~iPlkIl 262 (323)
|- .-+.|.. .+|+.+.....++..++|++. +-..+-.|.... +.. +.+|| |-.|++.....+ ..-+-.+
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 21 2245654 367777766678889999987 566777776543 444 56773 433333333332 3556667
Q ss_pred EeecCceeeeeeeccccCCcchhhhhccceeEEEecC----CceeEEeccccc
Q 020609 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN----ENLQILDESNSG 311 (323)
Q Consensus 263 sIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~----~~LqI~Dl~~~~ 311 (323)
++.+|+. ..+.+. ..-..+.|- .=+.+|+.-..+ ..+.+||+.+.+
T Consensus 388 d~~~~~~-~~l~~~-~~~~~~~~s-pdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGKT-KDLTPE-SGMHRTQLS-PDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ETTCCCC-EESCCS-SSEEEEEEC-TTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EcCCCCc-eeccCC-CceEEEEEC-CCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7777762 222210 000112221 124566665443 339999998776
No 196
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=30.49 E-value=2.4e+02 Score=23.62 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=55.6
Q ss_pred eEEEE-eccCcEEEEEecccc-------eeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccccCCcchh-
Q 020609 216 IYKVF-DLKNYTMLYSISDKN-------VQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF- 285 (323)
Q Consensus 216 ~YrVf-dlknYs~LYsIsde~-------VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~~sk~iqF- 285 (323)
.|..| |..+-..+..+.... +.++.+| +|-.|++........-+.++++.+|+...-+. ......+
T Consensus 10 ~~~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~----~~~~~~~~ 85 (396)
T 3c5m_A 10 NFETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE----GKGDNTFG 85 (396)
T ss_dssp CEEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC----SSCBCTTT
T ss_pred hhheeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec----CCCCcccc
Confidence 34444 555555666665432 5667777 45554444433333345788998887654222 1112111
Q ss_pred --hhhccceeEEEecCCceeEEeccccceeeec
Q 020609 286 --IEQFNEKLLVKQENENLQILDESNSGCLELS 316 (323)
Q Consensus 286 --iE~f~EkLLIKQE~~~LqI~Dl~~~~l~ev~ 316 (323)
.-.=+.+|+.-..+..|.+||+.+.+...+.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~ 118 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIY 118 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE
Confidence 2233567877777778999999887765543
No 197
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=30.32 E-value=4.1e+02 Score=26.24 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=36.8
Q ss_pred eEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 258 PlkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
-|..+|+.||+++-.+.+-.+... .- +-.-++.+++=-.+..|.+||+.+.+++
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~~~~~-g~-~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVSPWNG-GT-LTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCC-CE-EEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEeCCCCcEEeecCCCCCCcC-cc-eEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 377889999999988765322111 11 1123566777778899999999988875
No 198
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=28.38 E-value=2.3e+02 Score=26.70 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=60.8
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcE-------------EEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEe
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------------MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs-------------~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsI 264 (323)
......-|.+.+..+ ...+||++++-. .+..++. |..+-+ +|-.|++- ..+ -++++++
T Consensus 43 Lais~~~gll~a~~~--~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f-d~~~L~v~--~~~--~l~v~dv 113 (388)
T 1xip_A 43 LDISNSKSLFVAASG--SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF-HGDQVLVS--TRN--ALYSLDL 113 (388)
T ss_dssp EEEETTTTEEEEEET--TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE-ETTEEEEE--ESS--EEEEEES
T ss_pred EEEcCCCCEEEEeCC--CEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE-CCCEEEEE--cCC--cEEEEEc
Confidence 344455566555444 478889987544 5667665 888888 76666666 223 3778887
Q ss_pred ecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEeccccceee
Q 020609 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCLE 314 (323)
Q Consensus 265 edG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~e 314 (323)
.+-.........-.+-..+.++ +..+++=-.+..|.+||+.+..+..
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~---~p~~av~~~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNV---NNTLVILNSVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred hhhhccCccceeecceeeEEec---CCCEEEEECCCCEEEEEccCCcccc
Confidence 6444222221100001111211 2236777788999999998776543
No 199
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=27.76 E-value=1e+02 Score=29.37 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCCceEEEEecCCCeE------EEEeccCcE--EEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceee
Q 020609 202 DVNGKVLTYSAQDSIY------KVFDLKNYT--MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 202 dvN~kilty~aq~~~Y------rVfdlknYs--~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
+.++.+.+.++..+.+ .||..+..+ .+|.|.-++=.+|+++|.|-+++..+.........-+++.|..+.
T Consensus 48 ~~~~~V~s~d~d~~k~i~~kv~~v~~~~~~~~~~~~~i~t~~G~~i~~T~~H~~~~~~~~g~~~~~~a~~l~~gd~i~ 125 (454)
T 1dq3_A 48 NVPIYVKSFDPESKRVVKGKVNVIWKYELGKDVTKYEIITNKGTKILTSPWHPFFVLTPDFKIVEKRADELKEGDILI 125 (454)
T ss_dssp TSCCEEEEEETTTTEEEEEEEEEEEEEEECTTSCEEEEEETTCCEEEECTTCEEEEECTTSCEEEEETTTCCTTCEEC
T ss_pred CCcEEEEEEcCCCCEEEEeEeeEEEEcccCCCCeEEEEEECCceEEEEcCCCeEEEEeCCCcEEEEEhhhCCCCCEEE
Confidence 4456677777655544 589876665 599999888889999999998888764444444444555555544
No 200
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=27.44 E-value=2.8e+02 Score=23.39 Aligned_cols=113 Identities=10% Similarity=0.078 Sum_probs=64.4
Q ss_pred CCceEEEEecCCCeEEEEeccCcE--EEEEecccceeeEEE--c-CCEEEEEEec-------------------CCCeee
Q 020609 203 VNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKI--S-PGIMLLIFTK-------------------ASGHVP 258 (323)
Q Consensus 203 vN~kilty~aq~~~YrVfdlknYs--~LYsIsde~VqEIkI--S-~Gimll~~q~-------------------~~~~iP 258 (323)
.+|+-|+|...+....+||+.+-+ .++......+..... + +|..++.... ....--
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 467888888888899999999865 567766554433322 2 5555443321 122345
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecC------CceeEEeccccceeeec
Q 020609 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDESNSGCLELS 316 (323)
Q Consensus 259 lkIlsIedG~~l~~~~~~L~~sk~iqFiE~f~EkLLIKQE~------~~LqI~Dl~~~~l~ev~ 316 (323)
+.++++.+|+...-+... ..-..+.|--.-+.+|+.-.++ ..|.++|+...+...+.
T Consensus 170 l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp EEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred EEEEECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 778899999765433221 1111223221134556555443 36777887776665553
No 201
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=26.60 E-value=38 Score=30.42 Aligned_cols=95 Identities=9% Similarity=0.125 Sum_probs=38.2
Q ss_pred CCCeEEEEeccCcEEEEEecccceeeE-EEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccc---cCCcchhhhh
Q 020609 213 QDSIYKVFDLKNYTMLYSISDKNVQEI-KISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH---RNKKVDFIEQ 288 (323)
Q Consensus 213 q~~~YrVfdlknYs~LYsIsde~VqEI-kIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~---~sk~iqFiE~ 288 (323)
.++....||.++=+.+.+.....+... -+.+|.+++. ....+. +..++.+||+.+....+..+ ...++- .
T Consensus 17 ~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~-~s~dg~--l~a~d~~tG~~~w~~~~~~~~~~~~sp~~---~ 90 (369)
T 2hz6_A 17 LDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLP-DPNDGS--LYTLGSKNNEGLTKLPFTIPELVQASPCR---S 90 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEE-CTTTCC--EEEC-----CCSEECSCCHHHHHTTCSCC----
T ss_pred CCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEE-eCCCCE--EEEEECCCCceeeeeeccCccccccCceE---e
Confidence 344555555555555555443222211 1234433222 222333 56789999998766543211 122211 1
Q ss_pred ccceeEEEecCCceeEEecccccee
Q 020609 289 FNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 289 f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
-+..|++--.+..|.+||..+.++.
T Consensus 91 ~~~~v~~g~~dg~v~a~D~~tG~~~ 115 (369)
T 2hz6_A 91 SDGILYMGKKQDIWYVIDLLTGEKQ 115 (369)
T ss_dssp ----CCCCEEEEEEEEECCC-----
T ss_pred cCCEEEEEeCCCEEEEEECCCCcEE
Confidence 2556777667788999999877654
No 202
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=26.29 E-value=1.6e+02 Score=24.46 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=34.4
Q ss_pred ceEEEEecCCCeE------EEEeccCcEEEEEecccceeeEEEcCCEEEEEEe
Q 020609 205 GKVLTYSAQDSIY------KVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFT 251 (323)
Q Consensus 205 ~kilty~aq~~~Y------rVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q 251 (323)
-+|+++++.++.. .||.-+. ..+|.|.-++=.+|++++.|-++...
T Consensus 52 ~~V~s~d~~~g~~~~~~v~~~~~~~~-~~~~~i~t~~G~~i~~T~~Hp~~~~~ 103 (168)
T 4e2u_A 52 VFVYTLDIASGEIKKTRASYIYREKV-EKLIEIKLSSGYSLKVTPSHPVLLFR 103 (168)
T ss_dssp EEEEEECTTTCCEEEEECCEEEEEEE-EEEEEEEETTSCEEEECTTCEEEEES
T ss_pred eEEEEEeCCCCCEEEEEEeEEEEcCC-CeEEEEEECCCCEEEECCCCcEEEEc
Confidence 6899998766533 5777554 58898886666789999999877754
No 203
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=26.15 E-value=3.8e+02 Score=24.53 Aligned_cols=111 Identities=7% Similarity=0.036 Sum_probs=74.0
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccc
Q 020609 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (323)
Q Consensus 200 FDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~ 278 (323)
-...++++-.-.-+++.--|||.++.+.+=+|+-.. .-.=++ +|-.|..... .+ -+.++|-+|+++++++.--.
T Consensus 101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vSdG-s~--~l~~iDp~T~~v~~~I~V~~- 175 (268)
T 3nok_A 101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNGKLVRSDG-GT--MLTFHEPDGFALVGAVQVKL- 175 (268)
T ss_dssp EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEEEETTEEEEECS-SS--EEEEECTTTCCEEEEEECEE-
T ss_pred EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEecCCCEEEEECC-CC--EEEEEcCCCCeEEEEEEeCC-
Confidence 344567887777889999999999999998887431 101111 3333344444 33 46789999999999876321
Q ss_pred cCCcchh---hhhccceeEEEe-cCCceeEEeccccceeee
Q 020609 279 RNKKVDF---IEQFNEKLLVKQ-ENENLQILDESNSGCLEL 315 (323)
Q Consensus 279 ~sk~iqF---iE~f~EkLLIKQ-E~~~LqI~Dl~~~~l~ev 315 (323)
..+++.| ||.-+.+|++-. +...+.++|..+.++++.
T Consensus 176 ~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 176 RGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp TTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred CCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 2333333 244467899988 466789999999887654
No 204
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=25.24 E-value=3.7e+02 Score=24.04 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=73.0
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCeeeEEEEEeecCceeeeeeeccc
Q 020609 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (323)
Q Consensus 200 FDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~~L~ 278 (323)
+.-.++++-.-.-.++.--|+|.++.+.+-+|+-..=.-+-++ +|--|.+.+. .+ -+.++|.+|.++++.+.--..
T Consensus 71 i~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~g-s~--~l~viD~~t~~v~~~I~Vg~~ 147 (266)
T 2iwa_A 71 LTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDG-TS--ILYEIDPHTFKLIKKHNVKYN 147 (266)
T ss_dssp EEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECS-SS--EEEEECTTTCCEEEEEECEET
T ss_pred EEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECC-CC--eEEEEECCCCcEEEEEEECCC
Confidence 3333578877778899999999999999988863301123344 4444455554 34 478899999999987762111
Q ss_pred -----cCCcchhhhhccceeEEEec-CCceeEEeccccceee
Q 020609 279 -----RNKKVDFIEQFNEKLLVKQE-NENLQILDESNSGCLE 314 (323)
Q Consensus 279 -----~sk~iqFiE~f~EkLLIKQE-~~~LqI~Dl~~~~l~e 314 (323)
.-.+++|. +.+|++-.. ...+.++|..+.++++
T Consensus 148 ~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~ 186 (266)
T 2iwa_A 148 GHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLG 186 (266)
T ss_dssp TEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEE
T ss_pred CcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEE
Confidence 11233444 568888874 6789999999987754
No 205
>1oh1_A Staphostatin A; cysteine proteinase inhibitor, cysteine protease inhibitor, staphopain inhibitor, NOT similar to cystatins; NMR {Staphylococcus aureus} SCOP: b.61.2.2
Probab=24.17 E-value=72 Score=26.25 Aligned_cols=27 Identities=33% Similarity=0.758 Sum_probs=21.6
Q ss_pred cccEEE-EEeCCCCceEEEEEeecCCCeEEE
Q 020609 124 TNQRIC-FLNVTADEVIRSLFYNKNNDSLIT 153 (323)
Q Consensus 124 tn~~iC-~LN~s~dEvIrSiFyNk~NdSlIt 153 (323)
+-.++| +||-....+ +.||++|.++|+
T Consensus 50 ~p~YiCk~INedsr~i---iL~N~dN~nIiI 77 (109)
T 1oh1_A 50 DSDYICKYINTEHKQL---TLYNKNNSSIVI 77 (109)
T ss_dssp TCCEEEEEEETTTTEE---EEEETTTSCEEE
T ss_pred CchhhhhhhcccceEE---EEecCCCCcEEE
Confidence 567889 888877665 679999999887
No 206
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.01 E-value=3.2e+02 Score=22.87 Aligned_cols=126 Identities=11% Similarity=0.102 Sum_probs=59.6
Q ss_pred CceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCCCCCCCcceeecccCCCCe-EEecCCCceEEEEec--
Q 020609 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF-VEFDDVNGKVLTYSA-- 212 (323)
Q Consensus 136 dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk~~~g~~LFe~~~L~~PgF-VEFDdvN~kilty~a-- 212 (323)
...+.++-++...+.|+++|..... ..-..+.. ++..|+. ..+-. .|+. +.|...+|+.+++..
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~--~~~~l~~~---d~~~g~~---~~l~~-----~~~~~~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQ--TDRVIYKA---NPETLEN---EEVMV-----MPPCSHLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTT--CCEEEEEE---CTTTCCE---EEEEE-----CCSEEEEEECSSSSEEEEEECC
T ss_pred CccccceEECCCCCEEEEEecCCCC--ccceEEEE---ECCCCCe---EEeee-----CCCCCCCccCCCCceEEEecCC
Confidence 4467777888777777776533211 11012222 2222321 11111 1222 456554667776643
Q ss_pred --------------CCCeEEEEeccCcE--EEEEeccc----------ceeeEEEc-CCEEEEEEecCCCeeeEEEEEee
Q 020609 213 --------------QDSIYKVFDLKNYT--MLYSISDK----------NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE 265 (323)
Q Consensus 213 --------------q~~~YrVfdlknYs--~LYsIsde----------~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIe 265 (323)
.+....+||+.+-+ .|..-... ......++ +|-.|++.....+...+-++++.
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~ 383 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP 383 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence 24677888987654 23222110 13445666 45444444444455556667777
Q ss_pred cCceeeeee
Q 020609 266 DGTVLKSFN 274 (323)
Q Consensus 266 dG~~l~~~~ 274 (323)
+|+....+.
T Consensus 384 ~~~~~~~~~ 392 (396)
T 3c5m_A 384 ESYKHLEHH 392 (396)
T ss_dssp TTCC-----
T ss_pred ccccccccc
Confidence 777665444
No 207
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=23.17 E-value=44 Score=27.87 Aligned_cols=41 Identities=27% Similarity=0.573 Sum_probs=27.1
Q ss_pred CCCeEEecCCCceEEEEecC------CCeEEEEeccCcEEEEEeccccee
Q 020609 194 WPGFVEFDDVNGKVLTYSAQ------DSIYKVFDLKNYTMLYSISDKNVQ 237 (323)
Q Consensus 194 ~PgFVEFDdvN~kilty~aq------~~~YrVfdlknYs~LYsIsde~Vq 237 (323)
-|.|++||. ++|.+.|- ++.=..|.++-|...|=++|..|+
T Consensus 5 ~p~~~~~D~---~vLrF~a~~~d~~~e~~~e~~~~R~~~I~YyL~DdTie 51 (133)
T 2z14_A 5 SSGWVAFDK---QVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQ 51 (133)
T ss_dssp -CCCCCCCS---CCEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEE
T ss_pred ccchhhcCC---eEEEEEEEEeCCCcccccccceEEEEEEEEEcCCCcEE
Confidence 389999994 57777654 222234566778888888876543
No 208
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=23.00 E-value=1.1e+02 Score=25.66 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=48.0
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeeEEEEEeecCceee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (323)
+-||+.+|++.... .-+||..+....+|.|.=++=.+|+++|.+-+++... ........-++.-|..+.
T Consensus 60 ~s~~~~~gk~~~~~----v~~v~~~~~~~~~~~I~t~~G~~i~~T~~Hp~~v~~~-g~~~w~~A~eLk~GD~v~ 128 (186)
T 2jmz_A 60 KSFNKLSLIIEDKR----ILRVWRKKYSGKLIKITTKNRREITLTHDHPVYISKT-GEVLEINAEMVKVGDYIY 128 (186)
T ss_dssp ECCBTTTTBCCEEE----CCEEEEECCCEEEECCCCTTSCCCCBCTTCEEEEEET-TEEEEEEGGGCCTTSEEE
T ss_pred EEEECCCCCEEEEE----eEEEEEcCCCCcEEEEEECCCCEEEEeCCCEEEEeCC-CeEEEEEhhcCCCCCEEE
Confidence 34677777765532 4689999878999999888889999999999888765 233334444444555444
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=22.97 E-value=3.7e+02 Score=23.21 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=40.6
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEeccC--cEEEEEec-ccceeeEEEc-CCEEEEEEe
Q 020609 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS-DKNVQEIKIS-PGIMLLIFT 251 (323)
Q Consensus 192 L~~PgFVEFDdvN~kilty~aq~~~YrVfdlkn--Ys~LYsIs-de~VqEIkIS-~Gimll~~q 251 (323)
..+|+=+.+|. +|.+...+..++...+||.++ +..+...+ -.....+.++ +|.+++.-.
T Consensus 247 ~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 247 KPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 34798899997 589999999999999999833 33444433 2346677775 465544433
No 210
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=21.76 E-value=4.7e+02 Score=23.96 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=69.5
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEe-cccceee-EEEcCCEEEEEEecCCCeeeEEEEEeecCceeeeeee
Q 020609 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (323)
Q Consensus 198 VEFDdvN~kilty~aq~~~YrVfdlknYs~LYsI-sde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~~~~ 275 (323)
++||+ +.+..-..+++..+++|+++-+.+-++ .++-+-| |-+.++.+..+ .-..+. +-++|.+|++.+++|..
T Consensus 60 L~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~l-tw~~~~--v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 60 LVFHQ--GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQL-TWTEGL--LFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEET--TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEE-ESSSCE--EEEEETTTTEEEEEEEC
T ss_pred EEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEE-EccCCE--EEEEECCcCcEEEEEeC
Confidence 46774 677777777888999999988855554 3333333 66666655333 222443 47899999999999885
Q ss_pred ccccCCcchhhhhccceeEEEecCCceeEEecccccee
Q 020609 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDESNSGCL 313 (323)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~l~ 313 (323)
- ....-.- .-+..|++-.....|.++|-.+.+++
T Consensus 135 ~---~eGwGLt-~Dg~~L~vSdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 135 S---GEGWGLC-YWNGKLVRSDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp S---SCCCCEE-EETTEEEEECSSSEEEEECTTTCCEE
T ss_pred C---CceeEEe-cCCCEEEEECCCCEEEEEcCCCCeEE
Confidence 2 1112211 22556777776788999998887654
No 211
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=21.03 E-value=2e+02 Score=23.15 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=27.6
Q ss_pred EEEEeccCcEEEEEecccceeeEEEcCCEEEEEEe
Q 020609 217 YKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFT 251 (323)
Q Consensus 217 YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q 251 (323)
-.||+ ..+..+|.|.-++=.+|+.++.|.++...
T Consensus 48 ~~~~~-~~~~~~~~i~t~~G~~i~~T~~H~~~t~~ 81 (158)
T 1mi8_A 48 SRVFM-TGKKLVYILKTRLGRTIKATANHRFLTID 81 (158)
T ss_dssp CEEEE-EEEEEEEEEEETTCCEEEECTTCEEEETT
T ss_pred eeeee-cCCceEEEEEECCCCEEEEeCCceEEecc
Confidence 36777 57889999987777899999999987754
No 212
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=20.59 E-value=90 Score=32.90 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=42.2
Q ss_pred EEeeccchhhhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeeeeehhhhhhCC
Q 020609 100 EIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (323)
Q Consensus 100 EIv~a~diI~aL~~sG~c~af~r~tn~~iC~LN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~i~~i~~Gk 179 (323)
+.++-+|+++.|++.|....-.. .|.-..-++...++.+..+|--...|.|.+.+ +.=+++.++.-+|-.|
T Consensus 467 dli~~e~v~v~ls~~GyiKr~~g-~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft-------~~Gr~y~~~~~~lP~~- 537 (716)
T 1zvu_A 467 DMLPSEPVTIVLSQMGWVRSAKG-HDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVD-------STGRSYAIDPITLPSA- 537 (716)
T ss_dssp TTSCCCCCCEEEETTTEEEECCC----------------CCEEECCCSSSCEEEEE-------TTSEEEEECTTTSCCC-
T ss_pred hccCCceEEEEEecCCeEeccCC-CCcCccccccCCCCeEEEEEEecCCCEEEEEe-------cCCcEEEEEeeecccc-
Confidence 44566888999999999865311 11111344555666677888888999999866 4446677776666555
Q ss_pred CCCCCc
Q 020609 180 PDAGFA 185 (323)
Q Consensus 180 ~~~g~~ 185 (323)
...|.|
T Consensus 538 ~~~G~~ 543 (716)
T 1zvu_A 538 RGQGEP 543 (716)
T ss_dssp C---CB
T ss_pred cccCee
Confidence 244544
No 213
>1y55_X Avidin-related protein 4/5; streptavidin, biotin, avidin related molecule, high thermostability, sugar binding protein; HET: BTN; 1.00A {Gallus gallus} PDB: 1y52_X 1y53_X* 2of8_A* 2of9_A 2ofb_A* 2ofa_A* 2fhn_X* 2fhl_A* 3mm0_A 1wbi_A* 1vyo_A 1ij8_A* 1ave_A* 1avd_A* 1ldo_A* 1ldq_A* 1lel_A* 2avi_A* 3fdc_A* 3vgw_A* ...
Probab=20.16 E-value=56 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.647 Sum_probs=20.1
Q ss_pred ccccEEEEEeCCCCceEEEEEeecCC
Q 020609 123 ETNQRICFLNVTADEVIRSLFYNKNN 148 (323)
Q Consensus 123 ~tn~~iC~LN~s~dEvIrSiFyNk~N 148 (323)
+||| |+++++..|+|.++|+-...
T Consensus 77 WtGq--c~~~~~g~~~i~T~W~l~~~ 100 (126)
T 1y55_X 77 FTGQ--CFIDRNGKEVLKTMWLLRSS 100 (126)
T ss_dssp EEEE--EEECTTSCEEEEEEEEEECC
T ss_pred EEEE--EEECCCCCcEEEEEEEEEEc
Confidence 4787 99999888999999987644
No 214
>2c1s_A Biotin binding protein A; HET: BSO; 1.75A {Gallus gallus} PDB: 2c1q_A*
Probab=20.03 E-value=67 Score=26.89 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.0
Q ss_pred cccccEEEEEeCCCCceEEEEEeecC
Q 020609 122 RETNQRICFLNVTADEVIRSLFYNKN 147 (323)
Q Consensus 122 r~tn~~iC~LN~s~dEvIrSiFyNk~ 147 (323)
.+||| |+++.+..|+|.++|+...
T Consensus 80 ~WtGq--c~~~~~g~~~i~T~W~l~~ 103 (126)
T 2c1s_A 80 VFVGQ--CFVDRRGKEMLEMAWLLRE 103 (126)
T ss_dssp EEEEE--EEECTTSCEEEEEEEEEEC
T ss_pred EEEEE--EEECCCCCeEEEEEEEEEE
Confidence 34787 9999988899999998764
Done!