Query 020610
Match_columns 323
No_of_seqs 142 out of 1171
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14161 heat shock protein Gr 100.0 1E-30 2.2E-35 233.8 15.4 128 177-319 17-144 (178)
2 PRK14148 heat shock protein Gr 100.0 9.6E-31 2.1E-35 237.0 14.4 126 177-320 38-163 (195)
3 PRK14162 heat shock protein Gr 100.0 1.3E-30 2.8E-35 236.0 15.0 124 178-319 38-161 (194)
4 PRK14158 heat shock protein Gr 100.0 1.4E-30 3.1E-35 235.7 15.2 125 177-319 38-162 (194)
5 PRK14151 heat shock protein Gr 100.0 1.4E-30 3.1E-35 232.3 14.9 122 182-320 23-144 (176)
6 PRK14143 heat shock protein Gr 100.0 1.5E-30 3.3E-35 241.7 15.5 126 177-319 65-190 (238)
7 PRK14160 heat shock protein Gr 100.0 2.4E-30 5.2E-35 236.9 15.2 128 170-319 52-179 (211)
8 PRK14155 heat shock protein Gr 100.0 2.4E-30 5.2E-35 236.3 14.2 124 182-319 16-139 (208)
9 PRK14146 heat shock protein Gr 100.0 3.1E-30 6.7E-35 236.6 14.4 121 181-319 56-176 (215)
10 PRK14139 heat shock protein Gr 100.0 4E-30 8.6E-35 231.4 14.7 118 181-318 34-151 (185)
11 PRK14147 heat shock protein Gr 100.0 3.3E-30 7.1E-35 229.3 14.0 116 184-319 23-138 (172)
12 PRK14154 heat shock protein Gr 100.0 3.7E-30 7.9E-35 235.2 14.7 120 184-319 57-176 (208)
13 PRK14140 heat shock protein Gr 100.0 4.6E-30 9.9E-35 231.9 15.1 124 179-320 37-160 (191)
14 PRK14145 heat shock protein Gr 100.0 5.6E-30 1.2E-34 232.2 15.0 124 176-320 42-165 (196)
15 PRK14153 heat shock protein Gr 100.0 4.6E-30 1E-34 232.4 13.7 122 180-319 34-155 (194)
16 PRK14159 heat shock protein Gr 100.0 8.1E-30 1.7E-34 227.8 14.2 114 187-319 31-144 (176)
17 PRK14141 heat shock protein Gr 100.0 8E-30 1.7E-34 233.1 14.3 124 184-319 36-159 (209)
18 PRK14150 heat shock protein Gr 100.0 1.2E-29 2.6E-34 229.1 14.5 123 178-320 40-162 (193)
19 PRK14163 heat shock protein Gr 100.0 2.3E-29 4.9E-34 230.9 14.1 115 181-320 42-156 (214)
20 PRK14149 heat shock protein Gr 100.0 2.3E-29 5E-34 227.4 13.5 115 187-320 44-158 (191)
21 PRK14144 heat shock protein Gr 100.0 3.5E-29 7.6E-34 227.5 14.4 119 182-319 48-166 (199)
22 COG0576 GrpE Molecular chapero 100.0 5E-29 1.1E-33 224.8 14.8 116 186-318 43-158 (193)
23 KOG3003 Molecular chaperone of 100.0 6.7E-29 1.5E-33 229.5 15.9 133 177-321 69-201 (236)
24 PRK10325 heat shock protein Gr 100.0 6.8E-29 1.5E-33 224.8 14.6 120 180-319 43-162 (197)
25 PRK14156 heat shock protein Gr 100.0 1.3E-28 2.8E-33 220.3 14.1 122 173-318 22-143 (177)
26 PRK14157 heat shock protein Gr 99.9 1.7E-27 3.7E-32 220.1 13.2 112 184-320 82-193 (227)
27 PRK14164 heat shock protein Gr 99.9 9.6E-27 2.1E-31 214.1 12.3 108 186-318 77-185 (218)
28 PRK14142 heat shock protein Gr 99.9 1.8E-26 3.9E-31 212.7 12.0 105 191-319 45-149 (223)
29 cd00446 GrpE GrpE is the adeni 99.9 4.3E-24 9.3E-29 181.6 11.5 105 196-318 2-106 (137)
30 PF01025 GrpE: GrpE; InterPro 99.9 1E-23 2.2E-28 181.9 6.2 126 178-321 10-135 (165)
31 PRK14143 heat shock protein Gr 93.8 1.2 2.6E-05 42.4 12.4 62 174-235 69-134 (238)
32 PRK14163 heat shock protein Gr 91.9 4 8.6E-05 38.5 12.7 61 175-235 43-107 (214)
33 PRK14155 heat shock protein Gr 91.9 3.4 7.4E-05 38.6 12.2 61 175-235 16-80 (208)
34 PRK14154 heat shock protein Gr 91.6 4 8.8E-05 38.3 12.4 63 173-235 53-119 (208)
35 PRK14147 heat shock protein Gr 90.3 4.2 9.2E-05 36.8 10.9 59 177-235 23-85 (172)
36 PF06156 DUF972: Protein of un 89.5 1.1 2.3E-05 37.9 6.0 48 174-221 10-57 (107)
37 PRK14162 heat shock protein Gr 87.8 12 0.00025 34.8 12.1 58 177-234 44-105 (194)
38 PRK14139 heat shock protein Gr 87.5 12 0.00026 34.5 11.9 61 175-235 35-99 (185)
39 PRK14157 heat shock protein Gr 87.4 6.8 0.00015 37.3 10.5 59 176-234 81-143 (227)
40 PRK14148 heat shock protein Gr 87.4 10 0.00022 35.2 11.5 62 174-235 42-107 (195)
41 PRK14158 heat shock protein Gr 87.1 14 0.00031 34.3 12.3 62 174-235 42-107 (194)
42 PRK14151 heat shock protein Gr 86.5 13 0.00028 33.9 11.5 58 177-234 25-86 (176)
43 PRK14144 heat shock protein Gr 85.7 17 0.00036 34.0 12.0 60 176-235 49-112 (199)
44 PTZ00464 SNF-7-like protein; P 85.5 26 0.00057 32.8 13.2 105 175-295 21-126 (211)
45 PRK14145 heat shock protein Gr 84.0 23 0.0005 33.0 12.1 60 176-235 49-112 (196)
46 PRK14146 heat shock protein Gr 82.6 30 0.00065 32.6 12.4 57 178-234 60-120 (215)
47 KOG2911 Uncharacterized conser 82.2 39 0.00084 35.2 13.8 44 163-206 224-267 (439)
48 PRK14140 heat shock protein Gr 77.9 32 0.00069 31.9 10.7 56 177-232 42-101 (191)
49 COG4467 Regulator of replicati 77.7 4.4 9.5E-05 34.9 4.7 71 174-246 10-83 (114)
50 KOG3003 Molecular chaperone of 76.6 54 0.0012 31.6 12.1 112 193-323 98-220 (236)
51 cd07627 BAR_Vps5p The Bin/Amph 76.3 40 0.00087 30.9 11.0 53 185-237 142-194 (216)
52 PRK13169 DNA replication intia 75.9 15 0.00033 31.3 7.5 46 174-219 10-55 (110)
53 PF03194 LUC7: LUC7 N_terminus 75.3 19 0.00042 34.4 8.9 118 151-290 98-235 (254)
54 COG0576 GrpE Molecular chapero 74.5 50 0.0011 30.4 11.0 59 179-237 43-105 (193)
55 PF14357 DUF4404: Domain of un 74.5 4.6 0.0001 32.6 3.8 19 274-292 67-85 (85)
56 PF13805 Pil1: Eisosome compon 74.3 92 0.002 30.6 14.4 89 187-285 166-254 (271)
57 PF06120 Phage_HK97_TLTM: Tail 73.9 67 0.0015 31.9 12.4 77 170-246 65-147 (301)
58 PF01025 GrpE: GrpE; InterPro 73.2 23 0.00049 30.6 8.2 43 171-216 17-59 (165)
59 PF03938 OmpH: Outer membrane 70.6 66 0.0014 27.3 11.9 48 198-245 81-128 (158)
60 PRK14161 heat shock protein Gr 68.8 95 0.002 28.4 11.4 40 196-235 47-86 (178)
61 cd07623 BAR_SNX1_2 The Bin/Amp 68.2 80 0.0017 29.2 11.0 50 187-236 150-199 (224)
62 COG2433 Uncharacterized conser 67.3 1.4E+02 0.0031 32.6 13.9 72 177-248 420-492 (652)
63 KOG0971 Microtubule-associated 67.0 2.4E+02 0.0053 32.6 15.8 73 173-246 225-317 (1243)
64 cd07664 BAR_SNX2 The Bin/Amphi 66.3 45 0.00097 31.6 9.1 53 185-237 158-210 (234)
65 PRK04325 hypothetical protein; 66.1 60 0.0013 25.6 8.4 48 174-221 4-51 (74)
66 TIGR03185 DNA_S_dndD DNA sulfu 66.0 1.3E+02 0.0027 32.2 13.3 41 177-217 426-466 (650)
67 COG0711 AtpF F0F1-type ATP syn 66.0 95 0.0021 27.4 10.9 79 167-245 46-125 (161)
68 cd07622 BAR_SNX4 The Bin/Amphi 63.6 96 0.0021 28.6 10.5 74 172-245 126-199 (201)
69 PRK14141 heat shock protein Gr 63.5 67 0.0015 30.2 9.6 57 175-231 34-94 (209)
70 PF12761 End3: Actin cytoskele 63.4 50 0.0011 31.0 8.6 22 176-197 100-121 (195)
71 PRK04406 hypothetical protein; 62.7 76 0.0017 25.2 8.4 48 174-221 6-53 (75)
72 PF07795 DUF1635: Protein of u 62.5 90 0.002 29.7 10.2 60 173-232 2-61 (214)
73 PRK14153 heat shock protein Gr 62.1 1.4E+02 0.003 27.9 12.2 54 177-233 45-98 (194)
74 PF09325 Vps5: Vps5 C terminal 61.4 61 0.0013 29.1 8.7 55 186-240 163-217 (236)
75 PF12329 TMF_DNA_bd: TATA elem 60.8 38 0.00081 26.7 6.4 39 179-217 33-71 (74)
76 PRK00846 hypothetical protein; 60.6 88 0.0019 25.3 8.5 51 174-224 8-58 (77)
77 COG4026 Uncharacterized protei 59.8 35 0.00077 33.1 7.1 66 176-244 132-198 (290)
78 PF04102 SlyX: SlyX; InterPro 58.8 74 0.0016 24.5 7.6 48 177-224 2-49 (69)
79 PRK02793 phi X174 lysis protei 57.4 92 0.002 24.4 8.6 47 175-221 4-50 (72)
80 PRK14150 heat shock protein Gr 57.4 83 0.0018 29.1 8.9 61 175-235 44-105 (193)
81 KOG0742 AAA+-type ATPase [Post 57.3 2.4E+02 0.0053 30.2 13.1 19 195-213 152-170 (630)
82 PLN03217 transcription factor 56.9 57 0.0012 27.3 6.9 56 171-226 16-71 (93)
83 KOG1962 B-cell receptor-associ 56.7 29 0.00062 33.0 5.9 39 179-217 172-210 (216)
84 PRK11637 AmiB activator; Provi 56.6 54 0.0012 33.0 8.3 49 177-225 87-135 (428)
85 PRK00736 hypothetical protein; 56.3 93 0.002 24.1 8.1 47 177-223 3-49 (68)
86 PRK00409 recombination and DNA 56.3 1.4E+02 0.003 33.1 11.8 13 198-210 549-561 (782)
87 PRK10325 heat shock protein Gr 55.6 1.7E+02 0.0038 27.0 11.5 60 176-235 46-106 (197)
88 PF06005 DUF904: Protein of un 55.5 70 0.0015 25.3 7.1 34 176-209 8-41 (72)
89 PRK02119 hypothetical protein; 55.5 1E+02 0.0022 24.3 8.4 48 175-222 5-52 (73)
90 PF03357 Snf7: Snf7; InterPro 54.3 1.3E+02 0.0028 25.5 9.1 26 267-292 92-122 (171)
91 KOG0796 Spliceosome subunit [R 53.8 1.4E+02 0.0031 30.0 10.4 96 179-293 122-234 (319)
92 PRK00888 ftsB cell division pr 53.4 55 0.0012 27.3 6.5 32 183-214 31-62 (105)
93 KOG2856 Adaptor protein PACSIN 52.5 2.3E+02 0.0051 29.5 11.8 59 167-229 169-227 (472)
94 PRK00409 recombination and DNA 52.5 1.4E+02 0.0031 32.9 11.2 54 176-229 520-573 (782)
95 PRK09039 hypothetical protein; 51.6 1.3E+02 0.0027 30.0 9.8 47 174-220 139-185 (343)
96 PF11559 ADIP: Afadin- and alp 51.6 1.1E+02 0.0024 26.3 8.3 51 174-224 68-118 (151)
97 PF04977 DivIC: Septum formati 51.2 62 0.0013 24.2 6.0 27 186-212 24-50 (80)
98 KOG4191 Histone acetyltransfer 51.2 1.2E+02 0.0025 32.3 9.6 67 163-231 394-466 (516)
99 TIGR03752 conj_TIGR03752 integ 50.2 1.8E+02 0.0039 30.8 10.9 73 174-246 61-139 (472)
100 PF10475 DUF2450: Protein of u 49.7 2.4E+02 0.0052 27.0 12.3 33 193-225 67-99 (291)
101 PF12958 DUF3847: Protein of u 49.3 1.4E+02 0.003 24.6 8.1 60 175-242 4-63 (86)
102 PF06698 DUF1192: Protein of u 49.2 70 0.0015 24.7 5.9 28 170-197 19-46 (59)
103 PF10146 zf-C4H2: Zinc finger- 48.9 2.4E+02 0.0053 26.8 11.4 70 178-248 31-103 (230)
104 COG1579 Zn-ribbon protein, pos 48.9 1.3E+02 0.0028 29.0 9.0 48 178-225 109-156 (239)
105 PF04977 DivIC: Septum formati 48.3 79 0.0017 23.6 6.2 36 176-211 21-56 (80)
106 PRK00295 hypothetical protein; 48.0 1.3E+02 0.0028 23.3 8.1 45 177-221 3-47 (68)
107 TIGR02894 DNA_bind_RsfA transc 47.9 1.2E+02 0.0025 27.8 8.1 48 170-217 78-135 (161)
108 cd07665 BAR_SNX1 The Bin/Amphi 47.8 1.7E+02 0.0036 27.9 9.6 42 185-226 158-199 (234)
109 PRK09039 hypothetical protein; 47.8 2.3E+02 0.0049 28.3 10.9 72 176-249 113-184 (343)
110 TIGR01069 mutS2 MutS2 family p 46.9 2.2E+02 0.0047 31.6 11.5 29 192-220 524-552 (771)
111 PF10211 Ax_dynein_light: Axon 46.5 1.3E+02 0.0029 27.4 8.4 36 183-218 124-159 (189)
112 KOG4196 bZIP transcription fac 45.8 89 0.0019 27.9 6.8 37 182-218 77-113 (135)
113 cd09237 V_ScBro1_like Protein- 45.6 3.1E+02 0.0067 27.0 11.7 103 169-289 248-351 (356)
114 cd07596 BAR_SNX The Bin/Amphip 45.1 2.1E+02 0.0045 24.9 9.6 46 187-232 146-191 (218)
115 TIGR01069 mutS2 MutS2 family p 44.8 2.6E+02 0.0057 31.0 11.7 27 190-216 536-562 (771)
116 COG1579 Zn-ribbon protein, pos 44.6 3E+02 0.0065 26.6 13.2 60 178-237 37-96 (239)
117 PF07926 TPR_MLP1_2: TPR/MLP1/ 44.3 2E+02 0.0043 24.5 8.7 50 177-226 64-113 (132)
118 PRK11637 AmiB activator; Provi 44.0 1.6E+02 0.0035 29.6 9.3 33 177-209 94-126 (428)
119 PF10883 DUF2681: Protein of u 43.5 1.1E+02 0.0023 25.3 6.6 39 181-219 25-63 (87)
120 PF00170 bZIP_1: bZIP transcri 43.1 1.2E+02 0.0026 22.6 6.4 35 179-213 26-60 (64)
121 PF09006 Surfac_D-trimer: Lung 42.8 65 0.0014 23.9 4.6 27 189-215 2-28 (46)
122 PRK14160 heat shock protein Gr 41.8 3.1E+02 0.0067 25.9 10.8 13 214-226 85-97 (211)
123 PF09457 RBD-FIP: FIP domain ; 41.2 1.1E+02 0.0025 22.6 5.8 30 173-202 1-30 (48)
124 PF06409 NPIP: Nuclear pore co 40.9 79 0.0017 30.8 6.2 69 179-247 127-198 (265)
125 PRK08476 F0F1 ATP synthase sub 40.8 2.4E+02 0.0052 24.3 11.1 65 177-241 57-122 (141)
126 COG3883 Uncharacterized protei 40.7 2.1E+02 0.0045 28.1 9.1 52 174-225 54-105 (265)
127 PF00170 bZIP_1: bZIP transcri 40.3 1.4E+02 0.003 22.2 6.3 33 175-207 29-61 (64)
128 PF04111 APG6: Autophagy prote 40.0 3.8E+02 0.0082 26.4 11.7 25 269-293 168-192 (314)
129 cd00632 Prefoldin_beta Prefold 39.9 1.4E+02 0.003 24.4 6.8 38 181-218 65-102 (105)
130 PRK13729 conjugal transfer pil 39.6 71 0.0015 33.7 6.2 21 195-215 99-119 (475)
131 PF13870 DUF4201: Domain of un 39.4 2.7E+02 0.0059 24.6 9.7 15 177-191 54-68 (177)
132 cd07596 BAR_SNX The Bin/Amphip 39.3 2.6E+02 0.0056 24.3 11.1 24 181-204 147-170 (218)
133 smart00338 BRLZ basic region l 39.3 1.3E+02 0.0028 22.4 6.0 37 178-214 25-61 (65)
134 cd07651 F-BAR_PombeCdc15_like 38.7 3.2E+02 0.0069 25.2 10.7 49 194-243 151-199 (236)
135 PRK14127 cell division protein 38.6 1.7E+02 0.0037 25.0 7.3 45 173-217 24-68 (109)
136 PF14662 CCDC155: Coiled-coil 38.2 3.4E+02 0.0073 25.6 9.7 45 177-221 86-130 (193)
137 PF08317 Spc7: Spc7 kinetochor 37.8 1.1E+02 0.0023 30.0 6.8 16 234-249 255-270 (325)
138 PF05529 Bap31: B-cell recepto 37.7 56 0.0012 29.2 4.6 32 187-218 155-186 (192)
139 COG2433 Uncharacterized conser 37.7 2.5E+02 0.0054 30.9 9.9 75 176-250 426-508 (652)
140 PRK10780 periplasmic chaperone 37.6 2.8E+02 0.0062 24.3 11.3 29 176-204 47-75 (165)
141 cd07665 BAR_SNX1 The Bin/Amphi 37.4 3.2E+02 0.007 26.0 9.7 60 181-240 161-220 (234)
142 KOG1853 LIS1-interacting prote 37.4 3.6E+02 0.0078 26.9 10.1 21 226-246 108-128 (333)
143 KOG0250 DNA repair protein RAD 37.1 5.9E+02 0.013 29.8 13.0 74 173-246 669-743 (1074)
144 COG4026 Uncharacterized protei 36.7 1.2E+02 0.0025 29.7 6.7 35 174-208 144-178 (290)
145 PF07795 DUF1635: Protein of u 36.5 1.4E+02 0.0031 28.4 7.1 49 175-223 15-63 (214)
146 TIGR02169 SMC_prok_A chromosom 36.4 2.5E+02 0.0054 31.0 10.0 86 181-290 953-1038(1164)
147 PRK06569 F0F1 ATP synthase sub 36.1 3.3E+02 0.0071 24.6 11.2 69 173-245 56-125 (155)
148 PF14388 DUF4419: Domain of un 36.0 68 0.0015 31.5 5.1 41 205-249 143-185 (299)
149 PF15290 Syntaphilin: Golgi-lo 35.4 4.8E+02 0.01 26.2 12.7 98 177-283 73-175 (305)
150 COG5509 Uncharacterized small 35.3 1E+02 0.0022 24.3 4.9 27 171-197 24-50 (65)
151 cd00632 Prefoldin_beta Prefold 35.1 1.4E+02 0.003 24.3 6.1 36 177-212 68-103 (105)
152 PF10168 Nup88: Nuclear pore c 35.0 5E+02 0.011 28.7 11.9 10 236-245 627-636 (717)
153 PF02388 FemAB: FemAB family; 34.7 2.4E+02 0.0052 28.4 8.9 49 178-226 241-295 (406)
154 PF10481 CENP-F_N: Cenp-F N-te 34.7 4.9E+02 0.011 26.1 12.0 77 171-250 11-87 (307)
155 PRK14164 heat shock protein Gr 34.4 4E+02 0.0086 25.3 9.8 59 170-231 75-133 (218)
156 PF15079 DUF4546: Domain of un 34.1 2.7E+02 0.0059 26.1 8.3 50 175-224 50-102 (205)
157 PF10267 Tmemb_cc2: Predicted 34.0 4.8E+02 0.01 26.9 11.0 41 205-246 274-314 (395)
158 cd07679 F-BAR_PACSIN2 The F-BA 33.9 3.8E+02 0.0082 26.2 9.7 67 169-239 162-234 (258)
159 PF04156 IncA: IncA protein; 33.8 3.3E+02 0.0072 23.9 14.4 67 174-240 83-151 (191)
160 PF06005 DUF904: Protein of un 33.5 2.4E+02 0.0052 22.3 10.7 41 177-217 16-63 (72)
161 COG0497 RecN ATPase involved i 33.5 3.8E+02 0.0083 29.0 10.5 66 236-318 241-306 (557)
162 KOG4403 Cell surface glycoprot 33.2 2.7E+02 0.0059 29.6 9.1 32 200-231 252-283 (575)
163 PF09403 FadA: Adhesion protei 33.1 3.3E+02 0.0072 23.8 9.7 25 199-223 88-112 (126)
164 cd07637 BAR_ACAP3 The Bin/Amph 32.9 4E+02 0.0088 24.7 11.6 40 201-240 65-104 (200)
165 PRK00888 ftsB cell division pr 32.5 1.3E+02 0.0028 25.2 5.5 37 174-210 29-65 (105)
166 PF05667 DUF812: Protein of un 32.4 2.5E+02 0.0055 30.3 9.0 59 177-238 333-391 (594)
167 PF11853 DUF3373: Protein of u 32.4 41 0.00088 35.5 3.1 28 177-204 29-56 (489)
168 COG4942 Membrane-bound metallo 32.3 4.5E+02 0.0098 27.5 10.5 42 177-218 57-98 (420)
169 TIGR03017 EpsF chain length de 32.3 5.1E+02 0.011 25.7 13.0 49 177-225 259-307 (444)
170 PF07106 TBPIP: Tat binding pr 31.9 3.5E+02 0.0076 23.7 10.9 31 175-205 75-105 (169)
171 PF12777 MT: Microtubule-bindi 31.9 5.1E+02 0.011 25.5 13.8 81 171-251 14-103 (344)
172 PTZ00446 vacuolar sorting prot 31.9 4.3E+02 0.0093 24.6 12.6 55 227-295 78-132 (191)
173 PRK10869 recombination and rep 31.8 3.1E+02 0.0068 29.0 9.5 28 218-245 362-389 (553)
174 PF05529 Bap31: B-cell recepto 31.7 1.2E+02 0.0025 27.2 5.6 33 177-209 159-191 (192)
175 COG2900 SlyX Uncharacterized p 31.6 2.8E+02 0.006 22.4 8.5 47 174-220 3-49 (72)
176 PF08172 CASP_C: CASP C termin 30.9 2E+02 0.0042 27.7 7.2 40 173-212 87-126 (248)
177 TIGR02894 DNA_bind_RsfA transc 30.7 2.2E+02 0.0047 26.1 7.1 45 176-220 108-152 (161)
178 COG3599 DivIVA Cell division i 30.5 3.2E+02 0.0069 25.8 8.4 52 178-229 43-99 (212)
179 PF13094 CENP-Q: CENP-Q, a CEN 30.3 3.5E+02 0.0077 23.5 8.2 50 176-225 31-80 (160)
180 PRK07352 F0F1 ATP synthase sub 30.2 3.8E+02 0.0083 23.6 11.6 68 175-242 67-135 (174)
181 PF06810 Phage_GP20: Phage min 30.1 4E+02 0.0086 23.7 9.5 60 175-234 30-93 (155)
182 TIGR02302 aProt_lowcomp conser 29.8 2E+02 0.0042 32.6 7.9 61 185-245 522-606 (851)
183 KOG4005 Transcription factor X 29.8 2.3E+02 0.005 27.9 7.4 33 185-217 89-121 (292)
184 PF04728 LPP: Lipoprotein leuc 29.6 2.6E+02 0.0056 21.5 6.9 35 177-211 15-49 (56)
185 PRK08475 F0F1 ATP synthase sub 29.4 4E+02 0.0087 23.6 10.5 64 174-237 80-144 (167)
186 PF09726 Macoilin: Transmembra 29.4 2E+02 0.0043 31.7 7.8 40 176-215 542-581 (697)
187 PF09325 Vps5: Vps5 C terminal 28.8 4.3E+02 0.0092 23.7 11.0 67 179-245 163-229 (236)
188 PF07989 Microtub_assoc: Micro 28.8 2.2E+02 0.0047 22.6 6.0 37 173-209 37-73 (75)
189 PF09755 DUF2046: Uncharacteri 28.7 6.2E+02 0.013 25.5 10.7 28 172-199 20-47 (310)
190 PRK04325 hypothetical protein; 28.7 2.9E+02 0.0063 21.7 6.8 44 174-217 11-54 (74)
191 cd07664 BAR_SNX2 The Bin/Amphi 28.5 5.2E+02 0.011 24.5 10.3 58 182-239 162-219 (234)
192 KOG0288 WD40 repeat protein Ti 28.3 3.1E+02 0.0066 28.9 8.4 32 176-207 45-76 (459)
193 PF01920 Prefoldin_2: Prefoldi 28.3 2.9E+02 0.0063 21.6 7.1 37 180-216 63-99 (106)
194 PF11500 Cut12: Spindle pole b 28.2 1.1E+02 0.0023 27.8 4.6 23 204-226 70-92 (152)
195 TIGR02338 gimC_beta prefoldin, 28.0 2.8E+02 0.0061 22.8 6.8 39 180-218 68-106 (110)
196 PF07798 DUF1640: Protein of u 27.8 4.4E+02 0.0095 23.5 9.3 32 194-225 74-105 (177)
197 PF12777 MT: Microtubule-bindi 27.7 2.6E+02 0.0057 27.5 7.7 14 303-316 324-337 (344)
198 PF11083 Streptin-Immun: Lanti 27.7 1E+02 0.0023 26.1 4.2 37 181-217 54-90 (99)
199 TIGR00606 rad50 rad50. This fa 27.6 1E+03 0.023 27.8 14.1 41 172-212 822-862 (1311)
200 PF04102 SlyX: SlyX; InterPro 27.6 2.9E+02 0.0062 21.3 6.7 44 175-218 7-50 (69)
201 PF13815 Dzip-like_N: Iguana/D 27.3 2.6E+02 0.0056 23.4 6.6 34 191-224 78-111 (118)
202 TIGR03321 alt_F1F0_F0_B altern 27.3 5.2E+02 0.011 24.2 10.2 72 168-239 46-129 (246)
203 PF08429 PLU-1: PLU-1-like pro 27.2 2.5E+02 0.0053 27.0 7.3 21 165-185 76-96 (335)
204 PRK13455 F0F1 ATP synthase sub 27.2 4.5E+02 0.0097 23.4 9.9 75 165-239 65-151 (184)
205 PF10186 Atg14: UV radiation r 26.9 5E+02 0.011 23.8 14.8 18 271-288 137-154 (302)
206 PF11471 Sugarporin_N: Maltopo 26.8 1.6E+02 0.0034 22.6 4.7 27 177-203 30-56 (60)
207 PF04201 TPD52: Tumour protein 26.6 5.1E+02 0.011 23.8 11.4 35 182-216 32-66 (162)
208 PF12240 Angiomotin_C: Angiomo 26.5 1.6E+02 0.0034 28.0 5.6 33 172-204 57-89 (205)
209 PF11221 Med21: Subunit 21 of 26.4 2.8E+02 0.006 24.1 6.8 15 174-188 99-113 (144)
210 PF00261 Tropomyosin: Tropomyo 26.4 3E+02 0.0066 25.6 7.5 44 174-217 3-46 (237)
211 cd07631 BAR_APPL1 The Bin/Amph 26.3 4.1E+02 0.009 25.4 8.4 54 194-247 62-126 (215)
212 PF05335 DUF745: Protein of un 26.2 3E+02 0.0065 25.5 7.3 42 177-218 135-176 (188)
213 cd07625 BAR_Vps17p The Bin/Amp 26.1 5.8E+02 0.013 24.3 11.0 53 186-238 164-216 (230)
214 PRK13460 F0F1 ATP synthase sub 26.1 4.6E+02 0.0099 23.1 10.9 77 168-244 57-134 (173)
215 PRK00295 hypothetical protein; 25.9 3.1E+02 0.0068 21.2 7.3 45 174-218 7-51 (68)
216 PF10211 Ax_dynein_light: Axon 25.8 5.2E+02 0.011 23.6 9.3 42 173-214 121-162 (189)
217 smart00338 BRLZ basic region l 25.6 2.8E+02 0.006 20.6 5.9 25 177-201 31-55 (65)
218 KOG4673 Transcription factor T 25.6 1.6E+02 0.0034 33.0 6.1 78 139-218 673-750 (961)
219 PF10779 XhlA: Haemolysin XhlA 25.4 3.1E+02 0.0068 21.0 8.1 42 176-217 3-44 (71)
220 TIGR03545 conserved hypothetic 25.3 2.7E+02 0.0058 29.8 7.7 41 185-225 218-258 (555)
221 PF06890 Phage_Mu_Gp45: Bacter 25.2 36 0.00078 30.8 1.2 29 47-75 15-44 (162)
222 PF11932 DUF3450: Protein of u 25.2 5.6E+02 0.012 23.9 11.5 72 174-247 44-115 (251)
223 COG1196 Smc Chromosome segrega 25.2 4.6E+02 0.01 30.2 10.0 85 183-291 946-1030(1163)
224 PF05218 DUF713: Protein of un 25.2 5.3E+02 0.012 23.6 11.4 86 200-292 46-133 (182)
225 PRK13410 molecular chaperone D 25.0 6.9E+02 0.015 27.1 10.8 15 170-184 500-514 (668)
226 cd09234 V_HD-PTP_like Protein- 24.8 6.7E+02 0.015 24.6 12.5 94 172-288 238-331 (337)
227 PF09177 Syntaxin-6_N: Syntaxi 24.8 3.7E+02 0.008 21.6 7.5 53 173-226 33-85 (97)
228 cd07624 BAR_SNX7_30 The Bin/Am 24.6 5.3E+02 0.012 23.4 11.6 29 198-226 139-167 (200)
229 PRK14156 heat shock protein Gr 24.6 5.5E+02 0.012 23.6 8.9 53 177-232 39-91 (177)
230 PF13851 GAS: Growth-arrest sp 24.5 5.6E+02 0.012 23.6 12.9 26 269-294 152-177 (201)
231 PF13805 Pil1: Eisosome compon 24.5 6E+02 0.013 25.1 9.3 65 173-243 166-232 (271)
232 PRK05771 V-type ATP synthase s 24.4 3.6E+02 0.0077 28.8 8.5 26 282-315 328-353 (646)
233 PF06156 DUF972: Protein of un 24.0 4.4E+02 0.0096 22.2 8.8 41 174-214 3-43 (107)
234 KOG0964 Structural maintenance 23.9 1.1E+03 0.024 27.8 12.2 92 175-281 421-514 (1200)
235 PLN02372 violaxanthin de-epoxi 23.7 6E+02 0.013 26.8 9.6 19 30-48 220-238 (455)
236 KOG3990 Uncharacterized conser 23.6 7.4E+02 0.016 24.7 10.9 62 173-239 226-287 (305)
237 COG3883 Uncharacterized protei 23.5 4.1E+02 0.0088 26.1 8.0 14 234-247 98-111 (265)
238 PF03114 BAR: BAR domain; Int 23.3 4.8E+02 0.01 22.4 13.7 30 191-220 129-158 (229)
239 TIGR03752 conj_TIGR03752 integ 23.3 6.9E+02 0.015 26.6 10.1 77 165-241 59-141 (472)
240 PRK03947 prefoldin subunit alp 23.3 4.6E+02 0.0099 22.2 7.5 35 184-218 99-133 (140)
241 PRK10361 DNA recombination pro 23.2 8.4E+02 0.018 25.9 10.7 66 174-239 80-145 (475)
242 PF01920 Prefoldin_2: Prefoldi 23.2 3.4E+02 0.0074 21.2 6.3 36 174-209 64-99 (106)
243 cd00890 Prefoldin Prefoldin is 23.1 4.1E+02 0.0089 21.5 7.0 45 170-217 81-125 (129)
244 PRK15422 septal ring assembly 23.0 4.3E+02 0.0092 21.7 9.8 37 175-211 7-43 (79)
245 PF07106 TBPIP: Tat binding pr 22.9 5.2E+02 0.011 22.6 8.5 66 181-246 74-139 (169)
246 KOG4348 Adaptor protein CMS/SE 22.9 3.2E+02 0.007 29.2 7.5 55 172-226 569-623 (627)
247 PRK04406 hypothetical protein; 22.8 3.9E+02 0.0085 21.2 7.3 45 173-217 12-56 (75)
248 KOG3647 Predicted coiled-coil 22.7 2.5E+02 0.0055 28.1 6.4 41 178-218 118-158 (338)
249 KOG2911 Uncharacterized conser 22.6 9.3E+02 0.02 25.5 11.3 59 166-224 234-293 (439)
250 PF05266 DUF724: Protein of un 22.5 6.2E+02 0.013 23.4 8.7 33 176-208 114-146 (190)
251 PF13949 ALIX_LYPXL_bnd: ALIX 22.5 6.4E+02 0.014 23.5 10.5 25 226-250 241-265 (296)
252 KOG0933 Structural maintenance 22.5 1.3E+03 0.029 27.2 13.6 102 175-289 680-784 (1174)
253 COG3074 Uncharacterized protei 22.5 4.3E+02 0.0093 21.5 9.4 58 182-241 21-78 (79)
254 PF05791 Bacillus_HBL: Bacillu 22.5 5.6E+02 0.012 23.1 8.3 43 184-226 108-150 (184)
255 PF11068 YlqD: YlqD protein; 22.4 5.3E+02 0.012 22.6 9.1 53 173-225 14-74 (131)
256 COG1322 Predicted nuclease of 22.3 9.2E+02 0.02 25.3 14.2 69 177-245 75-143 (448)
257 cd07639 BAR_ACAP1 The Bin/Amph 22.1 6.5E+02 0.014 23.5 11.0 42 199-240 63-104 (200)
258 KOG0977 Nuclear envelope prote 22.0 7.3E+02 0.016 26.9 10.1 55 188-244 164-218 (546)
259 PF11348 DUF3150: Protein of u 22.0 3.9E+02 0.0084 25.7 7.5 61 185-247 80-141 (257)
260 TIGR00634 recN DNA repair prot 22.0 8.3E+02 0.018 25.7 10.5 39 209-249 303-341 (563)
261 PHA02109 hypothetical protein 21.8 2.7E+02 0.0058 26.4 6.1 31 178-208 192-222 (233)
262 PRK07352 F0F1 ATP synthase sub 21.8 5.6E+02 0.012 22.6 12.7 11 306-316 155-165 (174)
263 KOG1962 B-cell receptor-associ 21.7 2.6E+02 0.0056 26.7 6.1 35 182-216 154-188 (216)
264 PRK09413 IS2 repressor TnpA; R 21.4 2.5E+02 0.0055 23.4 5.5 37 176-217 75-111 (121)
265 PF02994 Transposase_22: L1 tr 21.4 4.5E+02 0.0097 26.5 8.1 13 282-294 301-313 (370)
266 PF08580 KAR9: Yeast cortical 21.3 7.6E+02 0.017 27.2 10.3 61 188-251 237-297 (683)
267 PF11471 Sugarporin_N: Maltopo 21.3 2.1E+02 0.0046 21.9 4.5 23 185-207 31-53 (60)
268 PF07334 IFP_35_N: Interferon- 21.2 2E+02 0.0043 23.3 4.5 22 176-197 4-25 (76)
269 TIGR02338 gimC_beta prefoldin, 21.2 3.4E+02 0.0074 22.3 6.1 34 176-209 71-104 (110)
270 PF11855 DUF3375: Protein of u 21.1 2.7E+02 0.0058 28.9 6.6 65 177-247 142-206 (478)
271 PF14389 Lzipper-MIP1: Leucine 21.1 2.6E+02 0.0055 22.7 5.2 37 166-202 48-84 (88)
272 PF05008 V-SNARE: Vesicle tran 21.1 3.2E+02 0.0068 20.7 5.6 18 198-215 59-76 (79)
273 PF07544 Med9: RNA polymerase 21.0 2.2E+02 0.0048 22.6 4.8 34 169-202 49-82 (83)
274 cd07655 F-BAR_PACSIN The F-BAR 21.0 7.1E+02 0.015 23.5 9.7 61 181-241 170-236 (258)
275 KOG0981 DNA topoisomerase I [R 20.9 3.6E+02 0.0077 29.8 7.5 50 179-228 636-697 (759)
276 PF04740 LXG: LXG domain of WX 20.9 5.9E+02 0.013 22.5 13.8 79 172-251 3-82 (204)
277 PF11629 Mst1_SARAH: C termina 20.8 3.3E+02 0.0072 20.5 5.3 16 171-186 7-22 (49)
278 cd04766 HTH_HspR Helix-Turn-He 20.8 2.1E+02 0.0046 22.5 4.6 20 198-217 70-89 (91)
279 PRK14149 heat shock protein Gr 20.7 6.9E+02 0.015 23.3 8.6 56 176-234 47-102 (191)
280 PRK02793 phi X174 lysis protei 20.7 4.2E+02 0.0091 20.7 7.3 46 173-218 9-54 (72)
281 KOG4643 Uncharacterized coiled 20.5 4.7E+02 0.01 30.6 8.6 54 173-226 171-224 (1195)
282 TIGR02680 conserved hypothetic 20.5 1.2E+03 0.026 27.6 12.3 39 174-212 744-782 (1353)
283 cd07624 BAR_SNX7_30 The Bin/Am 20.5 6.5E+02 0.014 22.8 11.0 56 191-246 139-194 (200)
284 TIGR03185 DNA_S_dndD DNA sulfu 20.5 1.1E+03 0.023 25.3 13.5 14 276-289 504-517 (650)
285 PRK02119 hypothetical protein; 20.4 4.3E+02 0.0093 20.7 7.3 44 174-217 11-54 (73)
286 TIGR00634 recN DNA repair prot 20.2 5.7E+02 0.012 26.8 8.9 28 218-245 367-394 (563)
287 PF10458 Val_tRNA-synt_C: Valy 20.2 3.6E+02 0.0079 20.3 5.6 22 177-198 2-23 (66)
288 KOG0977 Nuclear envelope prote 20.1 1.1E+03 0.025 25.5 11.9 31 188-218 101-131 (546)
No 1
>PRK14161 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1e-30 Score=233.79 Aligned_cols=128 Identities=23% Similarity=0.357 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccC
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~ 256 (323)
+++.++-.+++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~---- 92 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPAN---- 92 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccc----
Confidence 3456677788999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 257 d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
.+..++.+++||+||+++|.++|+++||++|.+ ..|++|||++||||++.+-
T Consensus 93 --------~~~~~~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~---~~G~~FDP~~HEAv~~~~~ 144 (178)
T PRK14161 93 --------SDVEVTNIIAGVQMTKDELDKVFHKHHIEEIKP---EIGSMFDYNLHNAISQIEH 144 (178)
T ss_pred --------cchhHHHHHHHHHHHHHHHHHHHHHCCCEEecC---CCCCCCChHHhhhheeeCC
Confidence 012357899999999999999999999998721 2489999999999998764
No 2
>PRK14148 heat shock protein GrpE; Provisional
Probab=99.97 E-value=9.6e-31 Score=236.97 Aligned_cols=126 Identities=26% Similarity=0.343 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccC
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~ 256 (323)
+...+..++++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+..
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~---- 113 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKL---- 113 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc----
Confidence 3566788888999999999999999999999999999999999999999999999999999999999999986531
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 257 d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
...++|++||+||+++|.++|+++||++|. +.|.+|||++||||++.+-.
T Consensus 114 ----------~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~----~~G~~FDP~~HEAv~~~~~~ 163 (195)
T PRK14148 114 ----------EEAIAMKEGIELTAKMLVDILKKNGVEELD----PKGEKFDPNLHEAMAMIPNP 163 (195)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCChhHhheeeeeCCC
Confidence 235789999999999999999999999873 35889999999999987643
No 3
>PRK14162 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.3e-30 Score=235.96 Aligned_cols=124 Identities=25% Similarity=0.272 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCC
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 257 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d 257 (323)
...+..++.+++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+.+.
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~------ 111 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKAD------ 111 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc------
Confidence 34555667778888999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 258 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 258 ~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
++.++.|++||+||+++|.++|+++||++|. ..|.+|||++||||++.+.
T Consensus 112 --------~~~~~~l~~Gvemi~k~l~~vL~~~GV~~I~----~~G~~FDP~~HEAv~~~~~ 161 (194)
T PRK14162 112 --------DEAAKQLKKGVQMTLDHLVKALKDHGVTEIK----ADGEKFDPTLHQAVQTVAA 161 (194)
T ss_pred --------chhHHHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCChhHhhhheeecC
Confidence 1345789999999999999999999999883 3588999999999998754
No 4
>PRK14158 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.4e-30 Score=235.70 Aligned_cols=125 Identities=26% Similarity=0.295 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccC
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~ 256 (323)
....+..++++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~----- 112 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADE----- 112 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCc-----
Confidence 345567778889999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 257 d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
+.+++|++||+||+++|.++|+++||++|. ..+|.+|||++||||++.+-
T Consensus 113 ----------~~~~~i~~Gv~mi~k~l~~vLek~Gv~~I~---~~~G~~FDP~~HEAv~~~~~ 162 (194)
T PRK14158 113 ----------ESMSAIIEGIRMTLSMLLSTLKKFGVTPVE---AEKGTPFDPAYHQAMCQVES 162 (194)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHHHCCCEEec---CCCCCCCChHHhhhheeecC
Confidence 135789999999999999999999999872 12489999999999998654
No 5
>PRK14151 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.4e-30 Score=232.34 Aligned_cols=122 Identities=25% Similarity=0.372 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCC
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 261 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d 261 (323)
..++++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+++....
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~--------- 93 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSAD--------- 93 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc---------
Confidence 34455677788899999999999999999999999999999999999999999999999999999876531
Q ss_pred CCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 262 TAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 262 ~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
++.+++|++||+||+++|.++|+++||++|. ..|++|||++||||++.+-.
T Consensus 94 ----~~~~~~~~~Gv~mi~k~l~~~L~k~Gv~~i~----~~G~~FDP~~HEAv~~~~~~ 144 (176)
T PRK14151 94 ----DEAIKPMREGVELTLKMFQDTLKRYQLEAVD----PHGEPFNPEHHQAMAMQESA 144 (176)
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCCHHHhhcceeeCCC
Confidence 1346889999999999999999999999873 35889999999999987644
No 6
>PRK14143 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.5e-30 Score=241.72 Aligned_cols=126 Identities=21% Similarity=0.203 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccC
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~ 256 (323)
....+..++++|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+++..
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~---- 140 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPE---- 140 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccc----
Confidence 4556677888899999999999999999999999999999999999999999999999999999999999987542
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 257 d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
......|+.||+||+++|.++|+++||++|. ..|.+|||++||||++.+-
T Consensus 141 ---------~~~~~~l~~Gve~i~k~l~~~L~k~GV~~i~----~~G~~FDP~~HEAv~~~~~ 190 (238)
T PRK14143 141 ---------GEEAQALHRSYQGLYKQLVDVLKRLGVSPMR----VVGQEFDPNLHEAVLREPS 190 (238)
T ss_pred ---------chhHHHHHHHHHHHHHHHHHHHHHCCCeeeC----CCCCCCChHHhheeeeecC
Confidence 1224689999999999999999999999873 3588999999999998654
No 7
>PRK14160 heat shock protein GrpE; Provisional
Probab=99.97 E-value=2.4e-30 Score=236.86 Aligned_cols=128 Identities=27% Similarity=0.311 Sum_probs=115.0
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhh
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVV 249 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v 249 (323)
.+....++.+.+..+++++..+++++++++++|+|++|||+|||||++||++.+++||+++|+++||||+|||+||+.+.
T Consensus 52 ~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~ 131 (211)
T PRK14160 52 NEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVE 131 (211)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcc
Confidence 34455578888999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred hhhcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 250 KENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 250 ~ee~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
.. .+.|++||+||+++|.++|+++||++| ++.++|||++|+||++.+-
T Consensus 132 ~~-----------------~~~l~~Gv~mi~kql~~vL~k~GVe~I-----~~~G~FDP~~HEAv~~~~~ 179 (211)
T PRK14160 132 GS-----------------VEDLKKGIEMTVKQFKTSLEKLGVEEI-----STEGEFDPNLHNAVMHVED 179 (211)
T ss_pred cc-----------------hhHHHHHHHHHHHHHHHHHHHCCCEEe-----CCCCCCChHHhceeeeeCC
Confidence 32 257999999999999999999999987 4445899999999998753
No 8
>PRK14155 heat shock protein GrpE; Provisional
Probab=99.97 E-value=2.4e-30 Score=236.32 Aligned_cols=124 Identities=33% Similarity=0.433 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCC
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 261 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d 261 (323)
.+++++|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.... +
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~------~-- 87 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKD------S-- 87 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccccc------c--
Confidence 34455677788899999999999999999999999999999999999999999999999999999987642 0
Q ss_pred CCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 262 TAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 262 ~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
.++.+++|++||+||+++|.++|+++||++|. ...|.+|||++||||++.+-
T Consensus 88 ---~~~~~~~i~~Gvemi~k~~~~~L~k~GV~~I~---~~~G~~FDP~~HEAv~~~~~ 139 (208)
T PRK14155 88 ---ADPAVKNFIIGVEMTEKELLGAFERNGLKKID---PAKGDKFDPHLHQAMMEQPS 139 (208)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHCCCceec---CCCCCCCChhHhceeeeecC
Confidence 02346899999999999999999999999872 11489999999999998764
No 9
>PRK14146 heat shock protein GrpE; Provisional
Probab=99.97 E-value=3.1e-30 Score=236.58 Aligned_cols=121 Identities=22% Similarity=0.263 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCC
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~ 260 (323)
+..++.+++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+....
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~~-------- 127 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQS-------- 127 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------
Confidence 445566788889999999999999999999999999999999999999999999999999999999876431
Q ss_pred CCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 261 DTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 261 d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
+.+++|++||+||+++|.++|+++||++|. ..|.+|||++|+||++.+-
T Consensus 128 ------~~~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~----~~G~~FDP~~HeAv~~~~~ 176 (215)
T PRK14146 128 ------EELKPFVEGVKMILKEFYSVLEKSNVIRFD----PKGEPFDPMSMEALSSEEG 176 (215)
T ss_pred ------chhhHHHHHHHHHHHHHHHHHHHCcCeeeC----CCCCCCChhHhceeeeecC
Confidence 235789999999999999999999999873 3589999999999998764
No 10
>PRK14139 heat shock protein GrpE; Provisional
Probab=99.97 E-value=4e-30 Score=231.37 Aligned_cols=118 Identities=31% Similarity=0.309 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCC
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~ 260 (323)
+..++++|+.+++++++++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~--------- 104 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADESG--------- 104 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc---------
Confidence 34455667888899999999999999999999999999999999999999999999999999999976432
Q ss_pred CCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccc
Q 020610 261 DTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHL 318 (323)
Q Consensus 261 d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~ 318 (323)
.+..|++||+||+++|.++|+++||++|. ..|++|||++||||++.+
T Consensus 105 -------~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~----~~G~~FDP~~HEAv~~~~ 151 (185)
T PRK14139 105 -------DLEKLREGVELTLKQLTSAFEKGRVVEIN----PVGEKFDPHQHQAISMVP 151 (185)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHCCCceeC----CCCCCCChHHhheeeeec
Confidence 24789999999999999999999999873 368999999999999864
No 11
>PRK14147 heat shock protein GrpE; Provisional
Probab=99.97 E-value=3.3e-30 Score=229.25 Aligned_cols=116 Identities=23% Similarity=0.268 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCC
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 263 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~ 263 (323)
++.+|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~------------ 90 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGT------------ 90 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc------------
Confidence 34456777888999999999999999999999999999999999999999999999999999987543
Q ss_pred CchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 264 GAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 264 ~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
...+|++||+||+++|.++|+++||++|. ..|++|||++||||++.+-
T Consensus 91 ----~~~~l~~Gv~mi~k~l~~~L~~~Gv~~i~----~~G~~FDP~~HeAv~~~~~ 138 (172)
T PRK14147 91 ----EPSPLRDGLELTYKQLLKVAADNGLTLLD----PVGQPFNPEHHQAISQGEA 138 (172)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCChHHhceeeeecC
Confidence 13679999999999999999999999873 3588999999999998654
No 12
>PRK14154 heat shock protein GrpE; Provisional
Probab=99.97 E-value=3.7e-30 Score=235.22 Aligned_cols=120 Identities=23% Similarity=0.279 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCC
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 263 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~ 263 (323)
++++|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+....
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~----------- 125 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASE----------- 125 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-----------
Confidence 344566778888999999999999999999999999999999999999999999999999999876431
Q ss_pred CchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 264 GAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 264 ~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
++.+++|++||+||+++|.++|+++||++|. ..+|.+|||++||||++.+-
T Consensus 126 --~~~~~~l~eGvemi~k~l~~vL~k~GVe~I~---~~~G~~FDP~~HEAv~~~~~ 176 (208)
T PRK14154 126 --DPQVKSMRDGMSLTLDLLHNTLAKHGVQVIN---PNPGDPFDPALHEAMSVQAV 176 (208)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHCCCEEec---CCCCCCCChhHhheeeeeCC
Confidence 1346899999999999999999999999872 12489999999999988653
No 13
>PRK14140 heat shock protein GrpE; Provisional
Probab=99.97 E-value=4.6e-30 Score=231.94 Aligned_cols=124 Identities=27% Similarity=0.347 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCC
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 258 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~ 258 (323)
.+|.+++++++++++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+..
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~~------ 110 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEADD------ 110 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc------
Confidence 45566677788899999999999999999999999999999999999999999999999999999999975431
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 259 SNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 259 s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
+.+++|++||+||+++|.++|+++||++|. ..|.+|||++|+||++.+-.
T Consensus 111 --------~~~~~i~~Gv~mi~k~l~~~L~k~GV~~i~----~~Ge~FDP~~HEAv~~~~~~ 160 (191)
T PRK14140 111 --------EQTKSLLKGVEMVHRQLLEALKKEGVEVIE----AVGEQFDPNLHQAVMQDEDE 160 (191)
T ss_pred --------chHHHHHHHHHHHHHHHHHHHHHCCCEeeC----CCCCCCChHHhccceeeCCC
Confidence 246889999999999999999999999872 46889999999999987643
No 14
>PRK14145 heat shock protein GrpE; Provisional
Probab=99.97 E-value=5.6e-30 Score=232.21 Aligned_cols=124 Identities=23% Similarity=0.283 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhccc
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLK 255 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~ 255 (323)
+....+..+++++..+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+...
T Consensus 42 ~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~~---- 117 (196)
T PRK14145 42 QTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSGD---- 117 (196)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccc----
Confidence 3455667778889999999999999999999999999999999999999999999999999999999999987321
Q ss_pred CCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 256 IDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 256 ~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
...|++||+||+++|.++|+++||++|. ..|.+|||++||||++.+-.
T Consensus 118 -------------~~~l~~Gv~mi~k~l~~vL~k~GVe~I~----~~Ge~FDP~~HEAv~~~~~~ 165 (196)
T PRK14145 118 -------------YNSLKEGIELIYRQFKKILDKFGVKEIE----AEGQIFDPYKHHAVMQEEVE 165 (196)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCCchhhheeeeeCCC
Confidence 3579999999999999999999999873 35889999999999987643
No 15
>PRK14153 heat shock protein GrpE; Provisional
Probab=99.97 E-value=4.6e-30 Score=232.43 Aligned_cols=122 Identities=25% Similarity=0.345 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCC
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPS 259 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s 259 (323)
.+..++.+|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+..
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~------- 106 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTA------- 106 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-------
Confidence 3556677888999999999999999999999999999999999999999999999999999999999987541
Q ss_pred CCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 260 NDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 260 ~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
+.++.|++||+||+++|.++|+++||++|. +.|.+|||++|+||++.+-
T Consensus 107 -------~~~~~l~~Gvemi~k~~~~vL~k~Gv~~I~----~~G~~FDP~~HEAv~~~~~ 155 (194)
T PRK14153 107 -------EDMNSIVEGIEMVSKQFFSILEKYGLERIE----CEGEEFDPHRHEAMMHVET 155 (194)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHHHCCCeeeC----CCCCCCChhHhceeeeeCC
Confidence 235789999999999999999999999873 3588999999999998653
No 16
>PRK14159 heat shock protein GrpE; Provisional
Probab=99.97 E-value=8.1e-30 Score=227.79 Aligned_cols=114 Identities=26% Similarity=0.278 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCch
Q 020610 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 266 (323)
Q Consensus 187 eL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~ 266 (323)
+++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+.+..
T Consensus 31 ~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~-------------- 96 (176)
T PRK14159 31 EQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHD-------------- 96 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------------
Confidence 467788899999999999999999999999999999999999999999999999999999976531
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 267 PLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 267 e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
.....|++||+||+++|.++|+++||++| ++.++|||++||||++.+-
T Consensus 97 ~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I-----~~~G~FDP~~HEAv~~~~~ 144 (176)
T PRK14159 97 EISLKIKEGVQNTLDLFLKKLEKHGVALI-----KEEKEFDPNLHEAMFHVDS 144 (176)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCcCEec-----CCCCCCChHHhhhhheeCC
Confidence 23468999999999999999999999987 3444799999999998764
No 17
>PRK14141 heat shock protein GrpE; Provisional
Probab=99.97 E-value=8e-30 Score=233.12 Aligned_cols=124 Identities=32% Similarity=0.445 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCC
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 263 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~ 263 (323)
++++|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+++++.+. + .
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~-------~-~ 107 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEA-------R-A 107 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhcccccc-------c-c
Confidence 3445666778888999999999999999999999999999999999999999999999999999876420 0 0
Q ss_pred CchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 264 GAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 264 ~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
..++.+++|++||+||+++|.++|+++||++|. ..|++|||++||||++.+-
T Consensus 108 ~~~~~~~~l~eGv~mi~k~l~~vLek~GV~~I~----~~Ge~FDP~~HEAv~~~~~ 159 (209)
T PRK14141 108 AADAGLKALIEGVEMTERAMLNALERHGVKKLD----PEGQKFDPNFHQAMFEVPN 159 (209)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCCChHHhceeeeecC
Confidence 012457899999999999999999999999883 3588999999999998653
No 18
>PRK14150 heat shock protein GrpE; Provisional
Probab=99.96 E-value=1.2e-29 Score=229.13 Aligned_cols=123 Identities=31% Similarity=0.389 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCC
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 257 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d 257 (323)
...++++++++..+++ +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+....
T Consensus 40 ~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~----- 111 (193)
T PRK14150 40 DARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKE----- 111 (193)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccccc-----
Confidence 3445556666655544 68999999999999999999999999999999999999999999999999876431
Q ss_pred CCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 258 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 258 ~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
+..+++|++||+||+++|.++|+++||++|. ..|.+|||++|+||++.+-.
T Consensus 112 --------~~~~~~~~~Gv~mi~~~l~~~L~~~Gv~~i~----~~G~~FDP~~HeAv~~~~~~ 162 (193)
T PRK14150 112 --------NEALKALIEGVELTLKSLLDTVAKFGVEVVG----PVGEPFNPEVHQAISMQESE 162 (193)
T ss_pred --------chhHHHHHHHHHHHHHHHHHHHHHCCCeeeC----CCCCCCCHhHcceeeeeCCC
Confidence 1346889999999999999999999999873 35889999999999987654
No 19
>PRK14163 heat shock protein GrpE; Provisional
Probab=99.96 E-value=2.3e-29 Score=230.86 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCC
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~ 260 (323)
...++++|..+++++++++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~----------- 110 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG----------- 110 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch-----------
Confidence 345666788889999999999999999999999999999999999999999999999999999998752
Q ss_pred CCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 261 DTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 261 d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
.|++||+||+++|.++|+++||++|. ..|.+|||++||||++.+-.
T Consensus 111 ----------~l~~Gv~mi~k~l~~~L~k~Gv~~I~----~~G~~FDP~~HEAv~~~~~~ 156 (214)
T PRK14163 111 ----------ELVGGFKSVAESLETTVAKLGLQQFG----KEGEPFDPTIHEALMHSYAP 156 (214)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCChhHhceeeeecCC
Confidence 38899999999999999999999873 35889999999999986654
No 20
>PRK14149 heat shock protein GrpE; Provisional
Probab=99.96 E-value=2.3e-29 Score=227.44 Aligned_cols=115 Identities=25% Similarity=0.248 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCch
Q 020610 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 266 (323)
Q Consensus 187 eL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~ 266 (323)
.|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+...+
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~-------------- 109 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEV-------------- 109 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------------
Confidence 366677888899999999999999999999999999999999999999999999999999986541
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 267 PLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 267 e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
....+|++||+||+++|.++|+++||++| ++.++|||++||||++.+-.
T Consensus 110 ~~~~~l~~Gv~mi~k~l~~vL~k~GV~~I-----~~~G~FDP~~HEAv~~v~~~ 158 (191)
T PRK14149 110 DKESALTKGLELTMEKLHEVLARHGIEGI-----ECLEEFDPNFHNAIMQVKSE 158 (191)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHCCCEEe-----CCCCCCChHHhheeeeecCC
Confidence 22468999999999999999999999987 34446999999999987643
No 21
>PRK14144 heat shock protein GrpE; Provisional
Probab=99.96 E-value=3.5e-29 Score=227.48 Aligned_cols=119 Identities=27% Similarity=0.348 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCC
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 261 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d 261 (323)
..++++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.++...
T Consensus 48 ~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~--------- 118 (199)
T PRK14144 48 TALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADKN--------- 118 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHccccc---------
Confidence 44566778889999999999999999999999999999999999999999999999999999999886531
Q ss_pred CCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 262 TAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 262 ~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
...+|++||+||+++|.++|+++||++|. ..|.+|||++|+||++.+-
T Consensus 119 ------~~~~i~~Gv~mi~k~l~~~L~k~GV~~I~----~~G~~FDP~~HEAv~~~~~ 166 (199)
T PRK14144 119 ------SDPSMHEGLELTMKLFLDALQKFDVEQID----PLGQTFDPQQHEAMSMQPA 166 (199)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCChhHhceeeeeCC
Confidence 12479999999999999999999999873 3588999999999988653
No 22
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-29 Score=224.82 Aligned_cols=116 Identities=36% Similarity=0.490 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCc
Q 020610 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 265 (323)
Q Consensus 186 eeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~ 265 (323)
+++..|+.++++++++|+|++|||+|||+|++||++++++||+++|+++||||+|||+|||.++... .
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~-------~----- 110 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDD-------K----- 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------c-----
Confidence 5678888899999999999999999999999999999999999999999999999999999987652 1
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccc
Q 020610 266 VPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHL 318 (323)
Q Consensus 266 ~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~ 318 (323)
+.. ++|++||+||+++|.++|.++||++| . ++|+.|||++|+||++.+
T Consensus 111 d~~-~~l~~Gvem~~~~l~~~L~k~Gv~~i---~-~~Ge~FDP~~HeAv~~~~ 158 (193)
T COG0576 111 DPE-KALLEGVEMTLDQLLDALEKLGVEEI---G-PEGEKFDPNLHEAVQRVE 158 (193)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHHCCCEEe---C-CCCCCCCHHHhhheeeec
Confidence 122 78999999999999999999999987 2 358899999999999873
No 23
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.7e-29 Score=229.50 Aligned_cols=133 Identities=41% Similarity=0.500 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccC
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~ 256 (323)
+..++++++..++..+++ .+|+|+|+|.+||++|+|+|++|.++++++||+|+|+++||.|.|+|++|++++++++..
T Consensus 69 ~~ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~- 146 (236)
T KOG3003|consen 69 SLAEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEK- 146 (236)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc-
Confidence 556667777766665555 999999999999999999999999999999999999999999999999999999986322
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccccC
Q 020610 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLILG 321 (323)
Q Consensus 257 d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~~ 321 (323)
.+++..++.+++|+.||+++|.+||.+||++++. +.|++|||+.||||+|.+..+
T Consensus 147 ------~d~~~~L~~l~eGl~mte~ql~~vf~KhGLekld----PigekFDPn~HEAvfq~p~~~ 201 (236)
T KOG3003|consen 147 ------EDQKKDLKDLFEGLSMTEAQLKEVFAKHGLEKLD----PIGEKFDPNEHEAVFQVPDAA 201 (236)
T ss_pred ------cccchHHHHHHhHHHHHHHHHHHHHHHcCceecC----CCCCCCCcchhheeEeccccC
Confidence 2346789999999999999999999999999762 347899999999999977643
No 24
>PRK10325 heat shock protein GrpE; Provisional
Probab=99.96 E-value=6.8e-29 Score=224.83 Aligned_cols=120 Identities=28% Similarity=0.361 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCC
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPS 259 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s 259 (323)
.+++++.++.+++. +++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+....
T Consensus 43 ~~~~l~~~~~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~------- 112 (197)
T PRK10325 43 KIANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA------- 112 (197)
T ss_pred HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-------
Confidence 34455545544432 25899999999999999999999999999999999999999999999999886421
Q ss_pred CCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 260 NDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 260 ~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
...+++|++||+||+++|.++|+++||++|. .+|.+|||++||||++.+-
T Consensus 113 ------~~~~~~l~~Gv~m~~~~l~~~L~~~Gv~~i~----~~G~~FDP~~HEAv~~~~~ 162 (197)
T PRK10325 113 ------NPDMSAMVEGIELTLKSMLDVVRKFGVEVIA----ETNVPLDPNVHQAIAMVES 162 (197)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHCcCeeeC----CCCCCCChhHhceeeeeCC
Confidence 1236889999999999999999999999873 4689999999999998653
No 25
>PRK14156 heat shock protein GrpE; Provisional
Probab=99.96 E-value=1.3e-28 Score=220.30 Aligned_cols=122 Identities=23% Similarity=0.280 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhh
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKEN 252 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee 252 (323)
+.++.....+ +..+|+.+++++++++++|+|++|||+|||||++||++++++||.++|+++||||+|||+||+.+...
T Consensus 22 ~~~~~~~~~~-~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~- 99 (177)
T PRK14156 22 TVEEVVEETP-EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEGL- 99 (177)
T ss_pred HHHHHHhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCccc-
Confidence 3344433332 35668889999999999999999999999999999999999999999999999999999999987532
Q ss_pred cccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccc
Q 020610 253 FLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHL 318 (323)
Q Consensus 253 ~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~ 318 (323)
..+|++||+||+++|.++|+++||++| ++. +|||++|+||++.+
T Consensus 100 ----------------~~~l~~Gv~mi~k~l~~~L~~~GV~~i-----~~~-~FDP~~HEAv~~~~ 143 (177)
T PRK14156 100 ----------------TDDVKKGLEMVQESLIQALKEEGVEEV-----AVD-SFDHNLHMAVQTLP 143 (177)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHCCCeec-----CCC-CCChhHhhcceeec
Confidence 136899999999999999999999987 333 89999999999865
No 26
>PRK14157 heat shock protein GrpE; Provisional
Probab=99.95 E-value=1.7e-27 Score=220.13 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCC
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 263 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~ 263 (323)
++.+|..+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+..
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~~------------- 148 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHSE------------- 148 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc-------------
Confidence 4455667788889999999999999999999999999999999999999999999999999998642
Q ss_pred CchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 264 GAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 264 ~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
+.+||+||+++|.++|+++||++|. ..|++|||++||||++.+-.
T Consensus 149 --------~~~~~~~i~k~l~~vL~k~GVe~I~----~~Ge~FDP~~HEAV~~~~~~ 193 (227)
T PRK14157 149 --------MDDSFKAVAAKIDKAFEKFGVEKFG----EKGEDFDPTKHDAILHKPDP 193 (227)
T ss_pred --------cchHHHHHHHHHHHHHHHCCCEEeC----CCCCCCChhhhceeeeecCC
Confidence 3478999999999999999999872 35889999999999987643
No 27
>PRK14164 heat shock protein GrpE; Provisional
Probab=99.94 E-value=9.6e-27 Score=214.08 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCc
Q 020610 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 265 (323)
Q Consensus 186 eeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~ 265 (323)
..+..+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+++...
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~-------------- 142 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGDL-------------- 142 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------------
Confidence 457777889999999999999999999999999999999999999999999999999999986432
Q ss_pred hhhHHhHHHH-HHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccc
Q 020610 266 VPLLKSLLEG-VEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHL 318 (323)
Q Consensus 266 ~e~lksL~eG-VeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~ 318 (323)
.+| |+||+++|.++|+++||++|. ..|++|||++||||++.+
T Consensus 143 -------~~g~l~~i~~~l~~vL~k~Gve~I~----~~Ge~FDP~~HEAV~~~~ 185 (218)
T PRK14164 143 -------NEGPLKAFSDKLTNVLAGLKVEKFG----EEGDAFDPEIHEAVQDLS 185 (218)
T ss_pred -------cccHHHHHHHHHHHHHHHCCCEEeC----CCCCCCChhHhheeeeec
Confidence 133 789999999999999999873 358899999999998865
No 28
>PRK14142 heat shock protein GrpE; Provisional
Probab=99.94 E-value=1.8e-26 Score=212.73 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCchhhHH
Q 020610 191 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLK 270 (323)
Q Consensus 191 leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~e~lk 270 (323)
+.+++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+....
T Consensus 45 ~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~~------------------ 106 (223)
T PRK14142 45 TEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDLE------------------ 106 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhccccc------------------
Confidence 34667788999999999999999999999999999999999999999999999999875421
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 271 SLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 271 sL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
.++|+||+++|.++|+++||++|. ..|++|||++||||++..-
T Consensus 107 --~~~v~~I~kqL~~iLek~GVe~I~----~~Ge~FDP~~HEAv~~ve~ 149 (223)
T PRK14142 107 --SGPLKSVADKLDSALTGLGLVAFG----AEGEDFDPVLHEAVQHEGD 149 (223)
T ss_pred --cHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCChhhhceeeeecC
Confidence 035889999999999999999873 3588999999999987653
No 29
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=99.91 E-value=4.3e-24 Score=181.62 Aligned_cols=105 Identities=41% Similarity=0.543 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCchhhHHhHHHH
Q 020610 196 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEG 275 (323)
Q Consensus 196 eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~e~lksL~eG 275 (323)
++++++++|++|||+|||+|+.+|++++++||+++|+++||||+|||+||+++...+ +.++.+.+|
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~~--------------~~~~~~~~g 67 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKE--------------EELKNLVEG 67 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------------chHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999987541 246789999
Q ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccc
Q 020610 276 VEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHL 318 (323)
Q Consensus 276 VeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~ 318 (323)
|+||+++|.++|+++||++|. ..|++|||++|+||+..+
T Consensus 68 ~~~i~~~l~~~L~~~Gv~~i~----~~g~~FDp~~Heav~~~~ 106 (137)
T cd00446 68 VEMTLKQLLDVLEKHGVEKIE----PEGEPFDPNLHEAVMQVP 106 (137)
T ss_pred HHHHHHHHHHHHHHCCCEEEC----CCCCCCCHHHheeeeeec
Confidence 999999999999999999873 356799999999998765
No 30
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=99.89 E-value=1e-23 Score=181.86 Aligned_cols=126 Identities=33% Similarity=0.390 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCC
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 257 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d 257 (323)
...+..++.+++.++++++++++++.|+.|+|+||++|++++.+++++++.++|+++||||+|+|+||+.+....
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~----- 84 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSN----- 84 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHH-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 345556667788889999999999999999999999999999999999999999999999999999999987421
Q ss_pred CCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccccC
Q 020610 258 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLILG 321 (323)
Q Consensus 258 ~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~~ 321 (323)
+....+.+||+||+++|.++|+++||++|. +.|.+|||++|+||...+-.+
T Consensus 85 ---------~~~~~~~~g~~~~~~~l~~~L~~~Gv~~i~----~~G~~FDp~~heav~~~~~~~ 135 (165)
T PF01025_consen 85 ---------EEEESLLEGLEMILKQLEDILEKNGVEEIE----PVGEPFDPNLHEAVETVPDPD 135 (165)
T ss_dssp ---------CTCHHHHHHHHHHHHHHHHHHHTTTEEEE------TSSB--TTTEEEEEEECSSS
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHHHCCCEecC----CCCCCCCHHHheeheecCcCC
Confidence 224689999999999999999999999983 338899999999999877554
No 31
>PRK14143 heat shock protein GrpE; Provisional
Probab=93.84 E-value=1.2 Score=42.38 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
..+|...++.++++++.++.++ +++.+--.|+..|.+++++......-...--.+.+|-+.|
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl 134 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERAR 134 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456667777777777766654 4566667788889999998887777666666666665554
No 32
>PRK14163 heat shock protein GrpE; Provisional
Probab=91.93 E-value=4 Score=38.52 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
++|...+.++++++..++..+ +++.+--.|+..|.+++++......-...--.+.+|-+.|
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl 107 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAR 107 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 445556666666666655544 4566666788888888888877766555544445544443
No 33
>PRK14155 heat shock protein GrpE; Provisional
Probab=91.92 E-value=3.4 Score=38.64 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
+++...++++++++++++.++ +++.+--.|+..|.+++++......-...--.+.+|-+.|
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl 80 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRAT 80 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHH
Confidence 445556666666666655554 4566666788888988888887776665544445554443
No 34
>PRK14154 heat shock protein GrpE; Provisional
Probab=91.62 E-value=4 Score=38.27 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
..++|...+++++++++.++..+ +++.+--.|+..|.+.++++.....-...--.+.+|-+.|
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL 119 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGL 119 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 34445555556665555555544 4555555678888888888877666555544555554444
No 35
>PRK14147 heat shock protein GrpE; Provisional
Probab=90.29 E-value=4.2 Score=36.83 Aligned_cols=59 Identities=7% Similarity=0.058 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 177 L~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
+...+++++++++.++..+ +++.+--.|+..|.++++++.....-...--.+.+|-+.|
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl 85 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGL 85 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4455555565665555544 4566666788899999988887666555544444444443
No 36
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=89.48 E-value=1.1 Score=37.94 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~E 221 (323)
..++...+..+-+++..++.++.++.+.-.++.-|-+++|+|+.+...
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666677777777777777777788888889998877655
No 37
>PRK14162 heat shock protein GrpE; Provisional
Probab=87.81 E-value=12 Score=34.83 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKA 234 (323)
Q Consensus 177 L~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakd 234 (323)
|...++.++++++.++.++ +++.+--.|+..|.++.++......-...--.+.+|-+.
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 105 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERA 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3344444444444444433 345555567778888888887665554444444444443
No 38
>PRK14139 heat shock protein GrpE; Provisional
Probab=87.48 E-value=12 Score=34.53 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
+.+...++++++++.+++.++ +++.+--.|+..|.+++++......-...--.+.+|-+.|
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl 99 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAAL 99 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 334555556666665555544 4566666788888888888887766655555555554443
No 39
>PRK14157 heat shock protein GrpE; Provisional
Probab=87.40 E-value=6.8 Score=37.31 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKA 234 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakd 234 (323)
++...+.++++++++++.++ +++.+--.|+..|.+.++++.....-...--.+.+|-+.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRA 143 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRI 143 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34555555555555554443 456666678888888888888766555444444444443
No 40
>PRK14148 heat shock protein GrpE; Provisional
Probab=87.37 E-value=10 Score=35.24 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
.+.+...+++++++++.++..+ +++.+--.|+..|.+..++......-...-=.+.+|-+.|
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl 107 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQAL 107 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 3445666666666666665554 4566666788889999888887766655555555554443
No 41
>PRK14158 heat shock protein GrpE; Provisional
Probab=87.15 E-value=14 Score=34.26 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
...|...++++++++..++.++ +++.+--.|+..|.+++++......-...--.+.+|-+.|
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl 107 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERAL 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 3455566666666666655544 4566666788888888888877666655555555554443
No 42
>PRK14151 heat shock protein GrpE; Provisional
Probab=86.55 E-value=13 Score=33.90 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKA 234 (323)
Q Consensus 177 L~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakd 234 (323)
+...++++++++++++..+ +++.+--.|+..|.+++++......-...--.+.+|-+.
T Consensus 25 l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerA 86 (176)
T PRK14151 25 LTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERG 86 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3444455555555544443 355555678888888888887666555444444444433
No 43
>PRK14144 heat shock protein GrpE; Provisional
Probab=85.68 E-value=17 Score=34.03 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
++...++++++++++++..+ +++.+--.|+..|.++.++......-...--.+.+|-+.|
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl 112 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQAL 112 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 34444555555555544443 4555666788888888888887766655555555554443
No 44
>PTZ00464 SNF-7-like protein; Provisional
Probab=85.46 E-value=26 Score=32.81 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhc
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM-ENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENF 253 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEf-ENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~ 253 (323)
..|.+.+..++.++..++.|++.+++.+.....-- ...|+|..+-...-+ -.++-+..+...++||+.....+...
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK--~~E~ql~~l~~q~~nleq~~~~ie~a- 97 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKR--MYQNQQDMMMQQQFNMDQLQFTTESV- 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34555666666666666666666665554332211 224555444443322 23555777777888888776655432
Q ss_pred ccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCccc
Q 020610 254 LKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSH 295 (323)
Q Consensus 254 ~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I 295 (323)
..-..++.++....+.|.++.++.+|..|
T Consensus 98 -------------~~~~~vv~amk~g~kaLK~~~k~i~id~V 126 (211)
T PTZ00464 98 -------------KDTKVQVDAMKQAAKTLKKQFKKLNVDKV 126 (211)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 11245777777777888888888777654
No 45
>PRK14145 heat shock protein GrpE; Provisional
Probab=83.96 E-value=23 Score=32.99 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
.|...+++++++++.++..+ +++.+--.|+..|.+.++++.....-...-=.+.+|-+.|
T Consensus 49 ~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl 112 (196)
T PRK14145 49 ELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERAL 112 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 34555555555555554433 4566666788888888888887766665555555554444
No 46
>PRK14146 heat shock protein GrpE; Provisional
Probab=82.62 E-value=30 Score=32.58 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKA 234 (323)
Q Consensus 178 ~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakd 234 (323)
...+++++++++.++..+ +++.+--.|+..|.+++++......-...-=.+.+|-+.
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerA 120 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERV 120 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 334444444444444333 456666678888889888888776666555555555444
No 47
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.16 E-value=39 Score=35.23 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 163 DSDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 206 (323)
Q Consensus 163 ~~~~~se~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~ 206 (323)
++...++.+.+.-+|....+.+..+++-|++++++.++++.++.
T Consensus 224 ~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~ 267 (439)
T KOG2911|consen 224 DASIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQAL 267 (439)
T ss_pred cccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446778888888999999999999999999999998887544
No 48
>PRK14140 heat shock protein GrpE; Provisional
Probab=77.89 E-value=32 Score=31.92 Aligned_cols=56 Identities=18% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (323)
Q Consensus 177 L~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfa 232 (323)
+...+++++++++.++..+ +++.+--.|+..|.++.++......-...--.+.+|-
T Consensus 42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLe 101 (191)
T PRK14140 42 EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFE 101 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444 3555556677788888887776655554444444443
No 49
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=77.71 E-value=4.4 Score=34.89 Aligned_cols=71 Identities=20% Similarity=0.108 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHh
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQ---NFAKALLDVADNLGRAS 246 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAie---kfakdLLPVlDNLERAL 246 (323)
.+.|...+-.+-.++..+++.+.++-+....++-|-+++|+|+-. ....+.+.. .-.+...+..|||.|--
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~--~~~e~~~~~k~~~~~~~~~~~~dnL~~lY 83 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE--PTLEKTAVKKEKPAVKKKGEGYDNLARLY 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC--ccccchhhhcccccccccCCCchhHHHHH
Confidence 455677777777888888888888888888999999999999976 112222222 23345777888887753
No 50
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=76.61 E-value=54 Score=31.64 Aligned_cols=112 Identities=11% Similarity=0.104 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCchhhHHhH
Q 020610 193 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSL 272 (323)
Q Consensus 193 eEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~e~lksL 272 (323)
.+.+.+.++..|..+|+.+|..+.-..--.-.--..+....-+.+.. +++..-..++..+ +-+..+
T Consensus 98 Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~-~~~d~~~~L~~l~-------------eGl~mt 163 (236)
T KOG3003|consen 98 AECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEES-EKEDQKKDLKDLF-------------EGLSMT 163 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-cccccchHHHHHH-------------hHHHHH
Confidence 45567889999999999999988866544444444455555555555 4444444443321 122332
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccccCCCCCCC----------CCCccchhhhhc-ccccCCC
Q 020610 273 LEGVEMTEKQLGEVKFYYCFPSHVSASLPPEH----------LYEPGCYGSMFN-HLILGNR 323 (323)
Q Consensus 273 ~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge----------~FDP~~HEAV~q-~~~~~~~ 323 (323)
..-+. +...-..=.-+.||= ++|||+. ...|+++.-+.+ .|-|+.|
T Consensus 164 e~ql~----~vf~KhGLekldPig-ekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~L~~R 220 (236)
T KOG3003|consen 164 EAQLK----EVFAKHGLEKLDPIG-EKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGR 220 (236)
T ss_pred HHHHH----HHHHHcCceecCCCC-CCCCcchhheeEeccccCCCCCeEEEEeccCcccCCe
Confidence 33333 333333334455552 1578772 378998888876 4445543
No 51
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=76.29 E-value=40 Score=30.88 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 237 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLP 237 (323)
.+++..++.++.++..++..+..+|+.+-.++.+|+......=+..|-..|..
T Consensus 142 ~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~ 194 (216)
T cd07627 142 QEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788889999999999999999999999999988876655555444433
No 52
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.94 E-value=15 Score=31.35 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE 219 (323)
..++...+..+-+++..+++++.++-++..++.-|-+++|+|+.+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777778888888888888889999999999999999874
No 53
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=75.26 E-value=19 Score=34.35 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=64.9
Q ss_pred hhccccccccCCCCCchhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH---H
Q 020610 151 RRVSKQTAFSDSDSDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQ-----DKVLRSFAEMENVKDRTIREAE---N 222 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~se~~ls~deL~~~laelEeeL~~leeEleElk-----DkllRa~AEfENyRKRteRE~E---e 222 (323)
|-.+..++++-........... .-...|..+.++|..+-++++++- +.-..+.++.+.++.--.+-.. .
T Consensus 98 rI~~~k~RL~~~~~~~~~~~~~---~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~~~~~ 174 (254)
T PF03194_consen 98 RIERAKERLEQTQEEQAKEADE---EKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEKELEE 174 (254)
T ss_pred HHHHHHHHHHhCccccccchhh---hHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344555555543333322211 114555666666666666665543 2333444444444433222111 1
Q ss_pred HH------------HHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhC
Q 020610 223 SK------------KFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYY 290 (323)
Q Consensus 223 ak------------kfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~ 290 (323)
.. +.-+-.+.-.+|-+.|+-.|--.|+.. .++-|+..|...+..+.++.
T Consensus 175 ~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~RladH~~G-------------------K~HlGy~~IR~~l~el~e~~ 235 (254)
T PF03194_consen 175 YRNSIENSAQSQQQKLEVCEVCGAFLSVGDNDRRLADHFGG-------------------KQHLGYAKIREKLKELKEKR 235 (254)
T ss_pred hhhhhhhhhcccccCccchhhhhhHHhccchHHHHHHHhcc-------------------chhhhHHHHHHHHHHHHHHH
Confidence 11 123446677999999998888888753 47899999987777666543
No 54
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=74.46 E-value=50 Score=30.39 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020610 179 KLLKEREELLMAKNEE----MKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 237 (323)
Q Consensus 179 ~~laelEeeL~~leeE----leElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLP 237 (323)
..+++|+.++++++.. .+++.+--.|+..|.+..++..-...-...-..+.+|=+.|.-
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~ 105 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEA 105 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444433332 2455566667778888888777666555555555555555444
No 55
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=74.45 E-value=4.6 Score=32.61 Aligned_cols=19 Identities=0% Similarity=-0.160 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 020610 274 EGVEMTEKQLGEVKFYYCF 292 (323)
Q Consensus 274 eGVeMI~KqL~kVLek~GV 292 (323)
-.+.+|.+++..+|.+.||
T Consensus 67 P~l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 67 PKLAGILRNIMDSLANMGI 85 (85)
T ss_pred CcHHHHHHHHHHHHHHCCC
Confidence 4577899999999999997
No 56
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=74.33 E-value=92 Score=30.59 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCch
Q 020610 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 266 (323)
Q Consensus 187 eL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~ 266 (323)
+|..|++|+-.+.-..+-+-|.+.|++|..-||.-..+--|...+++.+.=+..-=.+-|..++.....+
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lldd~pv~P---------- 235 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEYGKRLLELLDDTPVVP---------- 235 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------T----------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----------
Confidence 3555556665566666667788999999999999999988888888887766655444455554321000
Q ss_pred hhHHhHHHHHHHHHHHHHH
Q 020610 267 PLLKSLLEGVEMTEKQLGE 285 (323)
Q Consensus 267 e~lksL~eGVeMI~KqL~k 285 (323)
......++|.+-+...|..
T Consensus 236 G~~r~~Y~g~~~t~qIl~d 254 (271)
T PF13805_consen 236 GDTRPPYDGYEQTRQILND 254 (271)
T ss_dssp TS-------HHHHHHHHHH
T ss_pred CCCCCCCCChhHHHHHHHH
Confidence 0124678887766554443
No 57
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.93 E-value=67 Score=31.89 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=55.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHhhHHhHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS----KK--FAIQNFAKALLDVADNLG 243 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eea----kk--fAiekfakdLLPVlDNLE 243 (323)
.++|..+|...+.++++-|.+.+..+++++.++..+...++||.+-+...--.. .. ..+..+.+++-..-++|.
T Consensus 65 ~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~ 144 (301)
T PF06120_consen 65 KEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELA 144 (301)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999999875433321111 11 223456666666666666
Q ss_pred HHh
Q 020610 244 RAS 246 (323)
Q Consensus 244 RAL 246 (323)
.+-
T Consensus 145 ~~~ 147 (301)
T PF06120_consen 145 VAQ 147 (301)
T ss_pred HHH
Confidence 554
No 58
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=73.18 E-value=23 Score=30.62 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=25.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
.-....+.+.++++.+.+..+.++++.+.. |...+.+++++..
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~---r~~~e~~~~~~~~ 59 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRK---RLEKEKEEAKKYA 59 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 335566777777777777666666555544 4445555555443
No 59
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=70.59 E-value=66 Score=27.35 Aligned_cols=48 Identities=8% Similarity=0.210 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 198 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 198 lkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
...++.+...++..+....+++...........+...+-++++.+-..
T Consensus 81 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 81 RQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888888888888888888888887777776654
No 60
>PRK14161 heat shock protein GrpE; Provisional
Probab=68.84 E-value=95 Score=28.44 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 196 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 196 eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
+++.+--.|+..|.+++++......-...-=.+.+|-+.|
T Consensus 47 AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl 86 (178)
T PRK14161 47 AEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRAL 86 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 4555555778888888888887766655555555554444
No 61
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=68.16 E-value=80 Score=29.22 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020610 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALL 236 (323)
Q Consensus 187 eL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLL 236 (323)
++..++.++.++..++..+..+|+++..++.+|+......-+..|=..|.
T Consensus 150 K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~ 199 (224)
T cd07623 150 KLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIII 199 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888899999999999999999999999999887665555554444
No 62
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.28 E-value=1.4e+02 Score=32.58 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHhHHHHHhhh
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK-KFAIQNFAKALLDVADNLGRASSV 248 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeak-kfAiekfakdLLPVlDNLERALe~ 248 (323)
..+.+.+++..++.++.++.+|+..+.+..++.++|+.+..+=+.+.+ +--+..=+..+-.-++.|++.|.-
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666665544433333 222333455566667777777754
No 63
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.96 E-value=2.4e+02 Score=32.58 Aligned_cols=73 Identities=18% Similarity=0.341 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNE--------------------EMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (323)
Q Consensus 173 s~deL~~~laelEeeL~~lee--------------------EleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfa 232 (323)
+..+|..++.+|+++|+.++- ++.+++.++.-.+|+.+---+|..+|.+++. -+.+...
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaq-e~ke~~k 303 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQ-EAKERYK 303 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344477777777777666543 3445666666666776655555555555543 3567788
Q ss_pred HHHhhHHhHHHHHh
Q 020610 233 KALLDVADNLGRAS 246 (323)
Q Consensus 233 kdLLPVlDNLERAL 246 (323)
..|-+..|++|.|.
T Consensus 304 ~emad~ad~iEmaT 317 (1243)
T KOG0971|consen 304 EEMADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999999884
No 64
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=66.34 E-value=45 Score=31.60 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 237 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLP 237 (323)
.+++..++.++.++..+...+..+|+.+.+++.+|+....+--+..|-..|..
T Consensus 158 ~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~ 210 (234)
T cd07664 158 PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIK 210 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778899999999999999999999999999998876655555444433
No 65
>PRK04325 hypothetical protein; Provisional
Probab=66.13 E-value=60 Score=25.58 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~E 221 (323)
++.+...|.+||.+++=.+.-+++|.+-+.+...+++-+++.+..=.+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778899999999999999999999888888888776665544333
No 66
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.02 E-value=1.3e+02 Score=32.16 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+.+.+.+++.++.+++.++..++.++.++..+.+.+++...
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555544443
No 67
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=66.02 E-value=95 Score=27.44 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=56.4
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 167 ESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL-RSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 167 ~se~~ls~deL~~~laelEeeL~~leeEleElkDkll-Ra~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
..+.+-...+....+++.+++|.+.+.+..++.+... ++....++++..++.+.++.+.-|.+.+-...=.++++|..-
T Consensus 46 l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~ 125 (161)
T COG0711 46 LAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAE 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677777778888888877777665544 566778888888888888888888777776666666666543
No 68
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=63.55 E-value=96 Score=28.61 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=47.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
...+.|.+..++++.+++..+...+.+.+++++-...|+..|.+=-|+.-...-.+.-.|.+.++.+-+++...
T Consensus 126 ~~~~~L~~k~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~~ 199 (201)
T cd07622 126 KAEDALANKKQQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIKEC 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666666677777777777777777777766666666666666665555556666666666665555443
No 69
>PRK14141 heat shock protein GrpE; Provisional
Probab=63.47 E-value=67 Score=30.24 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 231 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekf 231 (323)
+.+.+.++.+++++.+++..+ +++.+--.|+..|.+++++......-...--.+.+|
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnL 94 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNL 94 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 445555555555555555444 455566678888999988887666554444444444
No 70
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=63.43 E-value=50 Score=31.00 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQ 197 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleE 197 (323)
-|..++++|+++|...+++...
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3777888888888777766655
No 71
>PRK04406 hypothetical protein; Provisional
Probab=62.70 E-value=76 Score=25.18 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~E 221 (323)
.+.+...+.+||.+|+=.+.-+++|++-+.+...+++-+++.++.=.+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999988888777766554433
No 72
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=62.51 E-value=90 Score=29.71 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfa 232 (323)
+.+||...+.-..-||+..+.+..+-..+..-..+.+.|+=+++.+|+++|+.-...-++
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456766655554445555433333322333334456778888888888888877554443
No 73
>PRK14153 heat shock protein GrpE; Provisional
Probab=62.13 E-value=1.4e+02 Score=27.90 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAK 233 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfak 233 (323)
+..++.++...+.-+. +++.+--.|+..|.+++++......-...--.+.+|-+
T Consensus 45 l~~e~~elkd~~lR~~---AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLer 98 (194)
T PRK14153 45 CREEIESLKEQLFRLA---AEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFER 98 (194)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 3344444443333333 34555556777778887777766555444444444433
No 74
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=61.39 E-value=61 Score=29.09 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 020610 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVAD 240 (323)
Q Consensus 186 eeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlD 240 (323)
+++..++.++.+++.++..+..+|+.+-+++.+|+++..+.=...|-..|+..++
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777778888888888888888777776666655555554443
No 75
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=60.81 E-value=38 Score=26.69 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
..|..|...+..+++++.+++.++-...++.++++.|+.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555566666566666666655543
No 76
>PRK00846 hypothetical protein; Provisional
Probab=60.62 E-value=88 Score=25.27 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeak 224 (323)
.+++...+.+||.+++=.+.-+++|++-+.+....++.+++.++.=+++.+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999999999999988888776665554
No 77
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.85 E-value=35 Score=33.14 Aligned_cols=66 Identities=27% Similarity=0.304 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHhHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE-AENSKKFAIQNFAKALLDVADNLGR 244 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE-~EeakkfAiekfakdLLPVlDNLER 244 (323)
++.....++.++++++.++..++.+.+-+..++++-.+.|+++- .++++ .+...+.|+.=+-+|..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~---LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSR---LEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhchhHHHHHHH
Confidence 56667777788888888999999999999999999999998653 22222 34444444433334443
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.76 E-value=74 Score=24.53 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeak 224 (323)
+...+.+||.+++=.+.-+++|++-+.+...+++-+++.++.=.+..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888888888877777665555444
No 79
>PRK02793 phi X174 lysis protein; Provisional
Probab=57.45 E-value=92 Score=24.42 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~E 221 (323)
.++...+.+||.+++=.+.-+++|++-+.+...+++-+++.+..=.+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999999988888999998888888888776665544433
No 80
>PRK14150 heat shock protein GrpE; Provisional
Probab=57.40 E-value=83 Score=29.05 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELL-MAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 175 deL~~~laelEeeL-~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
.+|...+.++++++ ..+---.+++.+--.|+..|.+++++......-...--.+.+|-+.|
T Consensus 44 ~~l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl 105 (193)
T PRK14150 44 AELEAQLAEAQAEERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERAL 105 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 34555555543322 11222234555556677778888888777666655555555555544
No 81
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.29 E-value=2.4e+02 Score=30.17 Aligned_cols=19 Identities=32% Similarity=0.155 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020610 195 MKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 195 leElkDkllRa~AEfENyR 213 (323)
...+.|++.|-.++-+|-.
T Consensus 152 ~arYqD~larkr~~~e~e~ 170 (630)
T KOG0742|consen 152 RARYQDKLARKRYEDELEA 170 (630)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467788887777777743
No 82
>PLN03217 transcription factor ATBS1; Provisional
Probab=56.88 E-value=57 Score=27.27 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=43.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
.++.|++.+++-+|++.|.+...--.--+--..+.+.|.=||-|++.||+++.-+.
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998887754122224445678899999999999999887654
No 83
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.70 E-value=29 Score=33.00 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+.++..+....+++++.+++++.|-|+.+|..+++.+.+
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344445556667778888888888888888888887765
No 84
>PRK11637 AmiB activator; Provisional
Probab=56.62 E-value=54 Score=32.97 Aligned_cols=49 Identities=8% Similarity=0.143 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
+...+..++.+|..++.++..+..++..+.++.+..+..+.+-+....+
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666665555555555555
No 85
>PRK00736 hypothetical protein; Provisional
Probab=56.32 E-value=93 Score=24.13 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 223 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eea 223 (323)
+...+.+||.+++=.+.-+++|++-+.+...+++-+++++..=.++.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888899888888888877777665554444
No 86
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.28 E-value=1.4e+02 Score=33.09 Aligned_cols=13 Identities=0% Similarity=0.261 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 020610 198 MQDKVLRSFAEME 210 (323)
Q Consensus 198 lkDkllRa~AEfE 210 (323)
++.+|.+...+++
T Consensus 549 ~~~~l~~~~~~l~ 561 (782)
T PRK00409 549 LKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 87
>PRK10325 heat shock protein GrpE; Provisional
Probab=55.57 E-value=1.7e+02 Score=27.04 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREEL-LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 176 eL~~~laelEee-L~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
+|...+.+++.. ...+---.+++.+--.|+..|.+++++......-...--.+.+|-+.|
T Consensus 46 ~l~~~~~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl 106 (197)
T PRK10325 46 NLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRAL 106 (197)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 455555554322 122233345555666777778888888776666655555555555543
No 88
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.53 E-value=70 Score=25.27 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 209 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEf 209 (323)
.|...+..+-+-+..|+.++++++.+...+..+-
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~ 41 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEEN 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444444445555555555555444443333
No 89
>PRK02119 hypothetical protein; Provisional
Probab=55.49 E-value=1e+02 Score=24.29 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 222 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Ee 222 (323)
..+...+.+||.+++=.+.-+++|++-+.+...+++-+++.+..=.+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999888887777665544433
No 90
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=54.26 E-value=1.3e+02 Score=25.55 Aligned_cols=26 Identities=15% Similarity=-0.065 Sum_probs=14.5
Q ss_pred hhHHhHHHHH-----HHHHHHHHHHHHhCCC
Q 020610 267 PLLKSLLEGV-----EMTEKQLGEVKFYYCF 292 (323)
Q Consensus 267 e~lksL~eGV-----eMI~KqL~kVLek~GV 292 (323)
..++.+..+| .-+...|...++..+.
T Consensus 92 ~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~e 122 (171)
T PF03357_consen 92 KALKKINKQINLDKVEKLMDDFQEEMEDQDE 122 (171)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4455554443 3566666666666554
No 91
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=53.75 E-value=1.4e+02 Score=29.99 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhHHhH
Q 020610 179 KLLKEREELLMAKNEEMKQMQ-----DKVLRSFAEMENVKDRTIREAENSK------------KFAIQNFAKALLDVADN 241 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElk-----DkllRa~AEfENyRKRteRE~Eeak------------kfAiekfakdLLPVlDN 241 (323)
..+..|+++|..+=+++++|- +.-.-+..+.|-++.+-.++.+... +..+-.++-.+|-|.|+
T Consensus 122 ~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~ 201 (319)
T KOG0796|consen 122 EKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVNDA 201 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccch
Confidence 355556666666655555543 3444556666767763333333332 23445678888999999
Q ss_pred HHHHhhhhhhhcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCc
Q 020610 242 LGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFP 293 (323)
Q Consensus 242 LERALe~v~ee~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe 293 (323)
=.|.-.|+.. .++-|+.+|...+....+..+..
T Consensus 202 d~RlaDHf~G-------------------KlHlGy~~iR~~l~eLk~~~~~~ 234 (319)
T KOG0796|consen 202 DRRLADHFGG-------------------KLHLGYVLIREKLAELKKEKAKR 234 (319)
T ss_pred HHHHHHhhcc-------------------hHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888888753 58999999999888888877763
No 92
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=53.40 E-value=55 Score=27.34 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 183 EREELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (323)
Q Consensus 183 elEeeL~~leeEleElkDkllRa~AEfENyRK 214 (323)
+++++++.+++++++++.+..++.++.+.++.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444555555555555555555555543
No 93
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=52.50 E-value=2.3e+02 Score=29.54 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=46.1
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 167 ESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQ 229 (323)
Q Consensus 167 ~se~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAie 229 (323)
-++..++++++.+. ++.+++.+++++..+.+|..+++|+.-|.-+.....+...+-..+
T Consensus 169 kaDsSvspeq~kKl----qdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~ 227 (472)
T KOG2856|consen 169 KADSSVSPEQLKKL----QDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQ 227 (472)
T ss_pred ccCccCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 45566788776554 666888899999999999999999998888887777766665544
No 94
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.47 E-value=1.4e+02 Score=32.93 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQ 229 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAie 229 (323)
+|...+++.+.+++...++++.+..++.+..++++--++.+++++++...-+.+
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 573 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444455555555555444444444444443333
No 95
>PRK09039 hypothetical protein; Validated
Probab=51.57 E-value=1.3e+02 Score=30.01 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~ 220 (323)
..-|..+|+.++.+|..++.++...+.+..-..+.++.+++++..-+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355556666666666666666666555555555666655555443
No 96
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.56 E-value=1.1e+02 Score=26.29 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeak 224 (323)
.+.|...+..++.+++.++.++..+..+...+.+.+.........++++..
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666665555555443
No 97
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.21 E-value=62 Score=24.21 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 186 ELLMAKNEEMKQMQDKVLRSFAEMENV 212 (323)
Q Consensus 186 eeL~~leeEleElkDkllRa~AEfENy 212 (323)
.++..++.++++++.+...+.++.+++
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 98
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=51.17 E-value=1.2e+02 Score=32.26 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=51.5
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 163 DSDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF------AEMENVKDRTIREAENSKKFAIQNF 231 (323)
Q Consensus 163 ~~~~~se~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~------AEfENyRKRteRE~EeakkfAiekf 231 (323)
|++-++..+ .||+..++.++..+|+.+-+...+.+.+++++. .+|.|.-.-+.+++++++..-+..-
T Consensus 394 ded~pasdd--dDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la~eE~a~qe~~q~lddlDkqI~qaYvKr~r~~ 466 (516)
T KOG4191|consen 394 DEDRPASDD--DDEVLAELRKLQAELKAVSAHNRKKKHDLLRLAPEEMARQEFQQVLDDLDKQIEQAYVKRNRSR 466 (516)
T ss_pred ccCCCcccc--hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 888999999999999999999999999988754 6778888888888888876654433
No 99
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.20 E-value=1.8e+02 Score=30.79 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHhHHHHHh
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA------IQNFAKALLDVADNLGRAS 246 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfA------iekfakdLLPVlDNLERAL 246 (323)
.-.|...+.+++.++..+..+.+.++.+..|+++.-.|+-.|.+..++..+.-. .++-...+...+++|.+=|
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777777777777777777777766666655554444444443322111 1222334556666666555
No 100
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.70 E-value=2.4e+02 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 193 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 193 eEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
..+.++.+++..+.....|.|+.+..=.++...
T Consensus 67 ~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~ 99 (291)
T PF10475_consen 67 SSVQELQDELEEALVICKNLRRNLKSADENLTK 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445567777777777888888777666555433
No 101
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=49.26 E-value=1.4e+02 Score=24.57 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNL 242 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNL 242 (323)
++|..+++..+.+|...+.++..++.+...+.. .-=|+|+. +-+-...++++++|-..+|
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k--~eRK~RtH------RLi~rGa~lEsi~~e~~~l 63 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK--KERKERTH------RLIERGAILESIFPEPKDL 63 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------HHHHhhHHHHHHhhcchhc
Confidence 344444444444444444444444444333322 11222333 3333445666666654443
No 102
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.25 E-value=70 Score=24.66 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=22.3
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQ 197 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleE 197 (323)
..+|++||...|+-|++||.-++.++..
T Consensus 19 s~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 19 SLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999998888877766643
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.93 E-value=2.4e+02 Score=26.80 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhh
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAE---MENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 248 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AE---fENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~ 248 (323)
.+.|.+.+.+...|..|-...-+.|.-..+| +|+.-+.++.|+.+....+ ..+-.++.|+.|..++.+..
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i-~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI-QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444443 6788888888888865555 66778999999999988766
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.89 E-value=1.3e+02 Score=29.04 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
...+..+..++..+++++..+++++.+...++.-++.+..-++..+.+
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555554444443
No 105
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.30 E-value=79 Score=23.62 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN 211 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfEN 211 (323)
.+..++++++.+++.++++.++++.++.++.-+-+.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ 56 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDY 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 345566666666666666666666666655334333
No 106
>PRK00295 hypothetical protein; Provisional
Probab=48.00 E-value=1.3e+02 Score=23.33 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~E 221 (323)
+...+.+||.+++=.+.-+++|++-+.+...+++-+++.+..=.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888887776665544333
No 107
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.86 E-value=1.2e+02 Score=27.85 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=28.3
Q ss_pred hccCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKERE----------ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 170 ~~ls~deL~~~laelE----------eeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
..++.++...-+..+. .+...++.++.+++.++..+.++.+-+.++..
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467776555444443 34555666666666666666666666665553
No 108
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=47.82 E-value=1.7e+02 Score=27.93 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
.+++..++.|+.+++.++..+..+|+.+-+.+.+|+.+...-
T Consensus 158 ~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~e 199 (234)
T cd07665 158 PDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKE 199 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778888888899999999999999998888766543
No 109
>PRK09039 hypothetical protein; Validated
Probab=47.80 E-value=2.3e+02 Score=28.25 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhh
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVV 249 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v 249 (323)
++...+..++++|..++.+..+..-++.++.++++.+|+.... ++.+...+-+ =.++.=--+++|+..|..+
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~-le~~L~~ae~-~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAA-LEAALDASEK-RDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4556667777778888888888888888888888888877322 1222221111 1134444455555555443
No 110
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.86 E-value=2.2e+02 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 192 NEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (323)
Q Consensus 192 eeEleElkDkllRa~AEfENyRKRteRE~ 220 (323)
+.++++..+.+.+..++.+..+++++++.
T Consensus 524 ~~~~e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 524 EKELEQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 111
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.46 E-value=1.3e+02 Score=27.42 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 183 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 183 elEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
.++.++..++.+..++..++..+.+..+...++.+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555543
No 112
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=45.82 E-value=89 Score=27.85 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
.+||.+-..|..|++.|+..+-++.-|.++||-+.++
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777777777788888888888777654
No 113
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=45.65 E-value=3.1e+02 Score=27.04 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=58.3
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhh
Q 020610 169 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD-RTIREAENSKKFAIQNFAKALLDVADNLGRASS 247 (323)
Q Consensus 169 e~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRK-RteRE~EeakkfAiekfakdLLPVlDNLERALe 247 (323)
+..+..++|.+ +......|.....+-+.+-.++..+..+|-..+. +-.+-..+......+.++..|--.++.+.--..
T Consensus 248 ~e~lF~~eL~k-f~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~ 326 (356)
T cd09237 248 EKQLFPEELEK-FKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSA 326 (356)
T ss_pred HHHHHHHHHHH-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566654 5555555555544445555556666666643322 222222344555566677777777777665555
Q ss_pred hhhhhcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHh
Q 020610 248 VVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFY 289 (323)
Q Consensus 248 ~v~ee~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek 289 (323)
.+.+ ...||.++.-+...|.+....
T Consensus 327 ~l~~-----------------G~~FY~dL~~~~~~l~~~~~~ 351 (356)
T cd09237 327 GLPK-----------------GLEFYDDLLKMAKDLAKNVQA 351 (356)
T ss_pred ChHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4443 256777777777777665543
No 114
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.12 E-value=2.1e+02 Score=24.87 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (323)
Q Consensus 187 eL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfa 232 (323)
++..++.++.++...+..+..+++-+..++..|.....+.-...|-
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk 191 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLK 191 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777777777777777777777777776655443333
No 115
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.79 E-value=2.6e+02 Score=30.96 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 190 AKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 190 ~leeEleElkDkllRa~AEfENyRKRt 216 (323)
.+.+++++.+.+|.....+++.-|++.
T Consensus 536 ~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 536 KLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433333
No 116
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.62 E-value=3e+02 Score=26.57 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 237 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLP 237 (323)
..++..+...+..++.++++++.++.+...|..-+++|..+.......---+.-+.+|..
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~ 96 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNI 96 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 344444556677788888889999999999999998888776665533333333334433
No 117
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=44.33 E-value=2e+02 Score=24.52 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
+...+..++.++..++.++...+..+....+.++.-|..+++++..+...
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666666677777777777777776654
No 118
>PRK11637 AmiB activator; Provisional
Probab=44.04 E-value=1.6e+02 Score=29.63 Aligned_cols=33 Identities=6% Similarity=0.064 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 209 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEf 209 (323)
+...+..++.+|..+++++.+++.++......+
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333333
No 119
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=43.50 E-value=1.1e+02 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE 219 (323)
+..++.+++.|.+|.+.++-+..-+.++.+||+-|-+-|
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344566688888888889888889999999998876543
No 120
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.06 E-value=1.2e+02 Score=22.57 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyR 213 (323)
..+..|+..+..++.+...|...+..+..++..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444443
No 121
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=42.79 E-value=65 Score=23.90 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 189 MAKNEEMKQMQDKVLRSFAEMENVKDR 215 (323)
Q Consensus 189 ~~leeEleElkDkllRa~AEfENyRKR 215 (323)
..|++++..|..++.++++.|.-|||-
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777888777763
No 122
>PRK14160 heat shock protein GrpE; Provisional
Probab=41.80 E-value=3.1e+02 Score=25.94 Aligned_cols=13 Identities=38% Similarity=0.370 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 020610 214 DRTIREAENSKKF 226 (323)
Q Consensus 214 KRteRE~Eeakkf 226 (323)
.|+..+.++.++.
T Consensus 85 lR~~AefeN~RKR 97 (211)
T PRK14160 85 LRTVAEYDNYRKR 97 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 123
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=41.25 E-value=1.1e+02 Score=22.56 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKV 202 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkl 202 (323)
|.++|...+.+.+.++...+.++.++++-+
T Consensus 1 s~eeL~~~l~~~e~~~~~k~~~v~eLe~Yi 30 (48)
T PF09457_consen 1 SREELISLLKKQEEENARKDSRVRELEDYI 30 (48)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888777777766544
No 124
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=40.87 E-value=79 Score=30.82 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHhHHHHHhh
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE---AENSKKFAIQNFAKALLDVADNLGRASS 247 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE---~EeakkfAiekfakdLLPVlDNLERALe 247 (323)
+.+..+|-|-.+.+.++.+..+....+..|..+|++|.++- ..++.+|-..+++-..=-.+||--|+..
T Consensus 127 rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaEdy~kckI~~~arK~~~nwvrm~A 198 (265)
T PF06409_consen 127 RKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAEDYYKCKIAPSARKPLDNWVRMAA 198 (265)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccchHHHHHHHHH
Confidence 44555677778888889999999999999999999987654 3344444444444444445556555443
No 125
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=40.83 E-value=2.4e+02 Score=24.35 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADN 241 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkl-lRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDN 241 (323)
+....++-++.|...+.+...+.+.. ..+.++.+..+..+.++.+..+.-|...+-...-.....
T Consensus 57 a~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~ 122 (141)
T PRK08476 57 VSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQ 122 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433332 234455555555555555555555555444444333333
No 126
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.68 E-value=2.1e+02 Score=28.14 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
.+.|...+.++..++..+++++.+.+..+..+..+++-++.|+....+-..+
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666666666666666555555444443333
No 127
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.32 E-value=1.4e+02 Score=22.23 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFA 207 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~A 207 (323)
.+|...+..++.+...|..++..|...+..+..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555544443
No 128
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.95 E-value=3.8e+02 Score=26.40 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHhCCCc
Q 020610 269 LKSLLEGVEMTEKQLGEVKFYYCFP 293 (323)
Q Consensus 269 lksL~eGVeMI~KqL~kVLek~GVe 293 (323)
...|-.|+-.|.=.|..+..++|+.
T Consensus 168 W~EINAA~Gq~~LLL~~la~~l~~~ 192 (314)
T PF04111_consen 168 WNEINAAWGQTALLLQTLAKKLNFK 192 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556677777777777777788887
No 129
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.85 E-value=1.4e+02 Score=24.39 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
+..++..++.++.+++.+..++.....++.+++.++..
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666677777777777777777777766543
No 130
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.64 E-value=71 Score=33.70 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020610 195 MKQMQDKVLRSFAEMENVKDR 215 (323)
Q Consensus 195 leElkDkllRa~AEfENyRKR 215 (323)
.+++..++....+|+..++.+
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 333433443333444333333
No 131
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.45 E-value=2.7e+02 Score=24.58 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAK 191 (323)
Q Consensus 177 L~~~laelEeeL~~l 191 (323)
|...|++...+|..+
T Consensus 54 l~~kIeERn~eL~~L 68 (177)
T PF13870_consen 54 LNEKIEERNKELLKL 68 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444333333
No 132
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.29 E-value=2.6e+02 Score=24.28 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLR 204 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllR 204 (323)
+..++.+|..++.++..+++++.+
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 133
>smart00338 BRLZ basic region leucin zipper.
Probab=39.25 E-value=1.3e+02 Score=22.42 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRK 214 (323)
...+..|+.++..++.+..+|..++..+..+...++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666655543
No 134
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=38.69 E-value=3.2e+02 Score=25.18 Aligned_cols=49 Identities=6% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 020610 194 EMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 243 (323)
Q Consensus 194 EleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLE 243 (323)
+++.+..++.++.+++...+.....-+.....+ ...+..++-.++|.|.
T Consensus 151 e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~-~~~~~~~~~~~~~~~Q 199 (236)
T cd07651 151 ELEKNNAKLNKAQSSINSSRRDYQNAVKALREL-NEIWNREWKAALDDFQ 199 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 445566666666666666666666555555444 4456666666666554
No 135
>PRK14127 cell division protein GpsB; Provisional
Probab=38.60 E-value=1.7e+02 Score=25.03 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+.+|...-+...-..++.+.+++.+|++++.++.+..+.|+.|..
T Consensus 24 d~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 24 DQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444555556666666666666666666666655
No 136
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=38.23 E-value=3.4e+02 Score=25.61 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~E 221 (323)
|.+....++.+...+..++..+.+......++++.+++|+..=..
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 344444556777778888999999999999999999999876544
No 137
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.80 E-value=1.1e+02 Score=30.00 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=7.8
Q ss_pred HHhhHHhHHHHHhhhh
Q 020610 234 ALLDVADNLGRASSVV 249 (323)
Q Consensus 234 dLLPVlDNLERALe~v 249 (323)
.++.-+.++++.+...
T Consensus 255 ~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 255 ELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444566655433
No 138
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.73 E-value=56 Score=29.22 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 187 eL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
+.+.+++|++++++++..+.+|++.+|+..+.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666665543
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.68 E-value=2.5e+02 Score=30.87 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh---hHHhHHHHHhh
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK-----FAIQNFAKALL---DVADNLGRASS 247 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk-----fAiekfakdLL---PVlDNLERALe 247 (323)
.+...++.++.+...|+.++++++..+..+.++.+-++++..-+...-++ .-+..+=+.|- ..+|-|++=|.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666655555555555555555433332222 22333333332 45667776665
Q ss_pred hhh
Q 020610 248 VVK 250 (323)
Q Consensus 248 ~v~ 250 (323)
...
T Consensus 506 ~l~ 508 (652)
T COG2433 506 ELR 508 (652)
T ss_pred HHH
Confidence 544
No 140
>PRK10780 periplasmic chaperone; Provisional
Probab=37.61 E-value=2.8e+02 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLR 204 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllR 204 (323)
.|++.....+.+|..+..++..+..+|.+
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~q~ 75 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKLQR 75 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544444433
No 141
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=37.38 E-value=3.2e+02 Score=26.03 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVAD 240 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlD 240 (323)
+...+.++.+++..+.+.+..|.+.-.-+..=-.|.++|+-.-.+.++..|++.++..--
T Consensus 161 ~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qk 220 (234)
T cd07665 161 LQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQ 220 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666666665555555555666777777777777777777765443
No 142
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.37 E-value=3.6e+02 Score=26.92 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhHHhHHHHHh
Q 020610 226 FAIQNFAKALLDVADNLGRAS 246 (323)
Q Consensus 226 fAiekfakdLLPVlDNLERAL 246 (323)
--..+.|+.|=..-|+||||-
T Consensus 108 eql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhh
Confidence 344567788888888888874
No 143
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.08 E-value=5.9e+02 Score=29.78 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHhHHHHHh
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQ-NFAKALLDVADNLGRAS 246 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAie-kfakdLLPVlDNLERAL 246 (323)
-..++.+++.+++......+..+++++.++.++.-...-.++++.+-..+....+.. .+---=+|.+|++.+-+
T Consensus 669 e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei 743 (1074)
T KOG0250|consen 669 EASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREI 743 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHH
Confidence 333445555555556666666666666666666666666666666555555554442 22222345555555443
No 144
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.67 E-value=1.2e+02 Score=29.70 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE 208 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AE 208 (323)
.+++.+...+|..++..++.++++.++++.++.-+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666667777777777777766543
No 145
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=36.49 E-value=1.4e+02 Score=28.41 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 223 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eea 223 (323)
-||+....+..+++...++++..|++-+.+++.|-+-.|...++=+-+.
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~ 63 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEK 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777778889999999999999999999999999999988877444
No 146
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=36.41 E-value=2.5e+02 Score=30.95 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCC
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 260 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~ 260 (323)
+.+++.++..++.+++.+..--+.+..+++....|...-..... +|..-.+.|..++..+..
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~---------dl~~~~~~l~~~i~~l~~--------- 1014 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA---------KLEEERKAILERIEEYEK--------- 1014 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH---------
Q ss_pred CCCCchhhHHhHHHHHHHHHHHHHHHHHhC
Q 020610 261 DTAGAVPLLKSLLEGVEMTEKQLGEVKFYY 290 (323)
Q Consensus 261 d~~~~~e~lksL~eGVeMI~KqL~kVLek~ 290 (323)
.....+...|..|...|..+|..+
T Consensus 1015 ------~~~~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1015 ------KKREVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH
No 147
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=36.07 E-value=3.3e+02 Score=24.60 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDK-VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDk-llRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
...+..+..++.+++|.+.+.+...+... -.++.|+++-=|+.++.+..+..+-. ++++.-++|+|.+-
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~----~~~~~~~~~~~~~~ 125 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQN----IEDINLAAKQFRTN 125 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 33444444455555555555555555444 44555555555555555444444333 44555666666554
No 148
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=36.05 E-value=68 Score=31.45 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHhHHHHHhhhh
Q 020610 205 SFAEMENVKDRTIREAENSKKFA--IQNFAKALLDVADNLGRASSVV 249 (323)
Q Consensus 205 a~AEfENyRKRteRE~EeakkfA--iekfakdLLPVlDNLERALe~v 249 (323)
...|.++++.|+++=.+ |+ ...++..|.||+|.|-.+....
T Consensus 143 t~~DW~~L~~r~~~L~e----fg~~~~~w~~~L~pIl~~fi~s~~~~ 185 (299)
T PF14388_consen 143 TREDWEKLLERLDRLKE----FGEEMEWWASLLRPILDRFIASFDGP 185 (299)
T ss_pred cHHHHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999887665 65 8999999999999999887643
No 149
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.38 E-value=4.8e+02 Score=26.23 Aligned_cols=98 Identities=21% Similarity=0.232 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhh----hhh
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN-VKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV----VKE 251 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfEN-yRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~----v~e 251 (323)
|...+.+-+..|..-+.||.+|+.++.|.+-|+-- =--|.+- +-+.|-|. +=|+.|=.|+|.+.--|.- +.+
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEA--QLALKEAR-kEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEA--QLALKEAR-KEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 56677777888888889999999999999988733 3344432 22333332 3356677777776655431 111
Q ss_pred hcccCCCCCCCCCchhhHHhHHHHHHHHHHHH
Q 020610 252 NFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQL 283 (323)
Q Consensus 252 e~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL 283 (323)
.|. |++-+|..+++|+..++|-+.-.
T Consensus 150 YFv------DINiQN~KLEsLLqsMElAq~g~ 175 (305)
T PF15290_consen 150 YFV------DINIQNKKLESLLQSMELAQSGS 175 (305)
T ss_pred HHh------hhhhhHhHHHHHHHHHHHHHhcc
Confidence 221 12223455566666666555433
No 150
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=35.29 E-value=1e+02 Score=24.30 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=18.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQ 197 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleE 197 (323)
-+++.||...|+-|+++|+-++.|+..
T Consensus 24 llsV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 24 LLSVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357777777777777777777666543
No 151
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.05 E-value=1.4e+02 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 212 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENy 212 (323)
|.+.++.++.++..++++++++..++....+++..+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666777777777777777777666666554
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.01 E-value=5e+02 Score=28.71 Aligned_cols=10 Identities=30% Similarity=0.322 Sum_probs=3.9
Q ss_pred hhHHhHHHHH
Q 020610 236 LDVADNLGRA 245 (323)
Q Consensus 236 LPVlDNLERA 245 (323)
+|++=.-||.
T Consensus 627 ~P~LS~AEr~ 636 (717)
T PF10168_consen 627 LPVLSEAERE 636 (717)
T ss_pred CCCCCHHHHH
Confidence 3443333333
No 153
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=34.75 E-value=2.4e+02 Score=28.43 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDK------VLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDk------llRa~AEfENyRKRteRE~Eeakkf 226 (323)
.+.++.+++++..++++++++.++ ..+...+.++-....+++++++..+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666654 4556666666666666666665543
No 154
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=34.67 E-value=4.9e+02 Score=26.14 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=54.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhh
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 250 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ 250 (323)
+++--.| ..|+++|..|+.|+++-..-.=++--+.|-++--|+..+.++-+.. ++..=--.|++++|||+++-.-+.
T Consensus 11 GL~~~aL-qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s--~LkREnq~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 11 GLPTRAL-QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYS--ALKRENQSLMESCENLEKTRQKLS 87 (307)
T ss_pred cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhHHHHHHHHHHHHHHhh
Confidence 3444444 5678888888888888777666677777888777777766665543 344445678999999999975543
No 155
>PRK14164 heat shock protein GrpE; Provisional
Probab=34.43 E-value=4e+02 Score=25.34 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=33.7
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 231 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekf 231 (323)
.......|.++++++.+.+.-+..+.+.+ -.|+..|.++.++......-...-=.+.+|
T Consensus 75 ~~~~~~~le~el~el~d~llR~~AE~eN~---RkR~~rE~e~~~~~a~~~~~~~LLpVlDnL 133 (218)
T PRK14164 75 DDGEASTVEAQLAERTEDLQRVTAEYANY---RRRTERERQAIIETAKAGVATDLLPILDDL 133 (218)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 33445556667777766665555555555 456666777777766655444433333444
No 156
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=34.05 E-value=2.7e+02 Score=26.11 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVL---RSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkll---Ra~AEfENyRKRteRE~Eeak 224 (323)
.||..++-+.+++|.+.-+||+.+++-.- --+-||--+.+-++++.++..
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVEIMKeMQkDMDEKM 102 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVEIMKEMQKDMDEKM 102 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHhh
Confidence 46888888888888888888877665443 455677777888888877654
No 157
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.95 E-value=4.8e+02 Score=26.94 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHh
Q 020610 205 SFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 246 (323)
Q Consensus 205 a~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERAL 246 (323)
.++|+.|+|.-+ -..++-..|=...-++|+-++++++.-=+
T Consensus 274 Hq~Ei~~LKqeL-a~~EEK~~Yqs~eRaRdi~E~~Es~qtRi 314 (395)
T PF10267_consen 274 HQNEIYNLKQEL-ASMEEKMAYQSYERARDIWEVMESCQTRI 314 (395)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555655443 23455556666677777777777765433
No 158
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=33.86 E-value=3.8e+02 Score=26.16 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=51.2
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhHH
Q 020610 169 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQ------NFAKALLDVA 239 (323)
Q Consensus 169 e~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAie------kfakdLLPVl 239 (323)
+..++.+++ ..+.+++...+.++...+++|..+..++.-|+.+..++.....+...+ .|++.+|=.+
T Consensus 162 d~~~~~~q~----~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~ 234 (258)
T cd07679 162 DPALNPEQL----KKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEV 234 (258)
T ss_pred CCcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555554 455667888899999999999999999999999999998887766543 5666665544
No 159
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.82 E-value=3.3e+02 Score=23.94 Aligned_cols=67 Identities=13% Similarity=0.280 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK--DRTIREAENSKKFAIQNFAKALLDVAD 240 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyR--KRteRE~EeakkfAiekfakdLLPVlD 240 (323)
..+....+..+..++..++..+.++...+.....++...+ .+..++.-+..+.....+.+++-...+
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~ 151 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQK 151 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666655555555555554 233344444445555555555555553
No 160
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.51 E-value=2.4e+02 Score=22.26 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEE-------MKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 177 L~~~laelEeeL~~leeE-------leElkDkllRa~AEfENyRKRte 217 (323)
+...|..|+.+++.++++ ...++....++..|..+...|+.
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554 55566666666666655555554
No 161
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.51 E-value=3.8e+02 Score=28.96 Aligned_cols=66 Identities=20% Similarity=0.107 Sum_probs=41.9
Q ss_pred hhHHhHHHHHhhhhhhhcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhh
Q 020610 236 LDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMF 315 (323)
Q Consensus 236 LPVlDNLERALe~v~ee~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~ 315 (323)
.++++.+.+|+..+..- .+.++.+..+.+-+.-.+-++..+....+=. -.+-.|||+.-+.|.
T Consensus 241 ~~~~~~l~~a~~~l~~~----------~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~-------~~~le~Dp~~L~~ve 303 (557)
T COG0497 241 VSALSLLGRALEALEDL----------SEYDGKLSELAELLEEALYELEEASEELRAY-------LDELEFDPNRLEEVE 303 (557)
T ss_pred hhHHHHHHHHHHHHHHh----------hccChhHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCCHHHHHHHH
Confidence 35788898888877531 1123456777777777777777766543211 123459999988887
Q ss_pred ccc
Q 020610 316 NHL 318 (323)
Q Consensus 316 q~~ 318 (323)
.++
T Consensus 304 ~Rl 306 (557)
T COG0497 304 ERL 306 (557)
T ss_pred HHH
Confidence 654
No 162
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.23 E-value=2.7e+02 Score=29.62 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 200 DKVLRSFAEMENVKDRTIREAENSKKFAIQNF 231 (323)
Q Consensus 200 DkllRa~AEfENyRKRteRE~EeakkfAiekf 231 (323)
+-+.|+...++.+.+|+++++++.+.-|++++
T Consensus 252 e~Lq~aEqsl~dlQk~Lekar~e~rnvavek~ 283 (575)
T KOG4403|consen 252 EGLQRAEQSLEDLQKRLEKAREEQRNVAVEKL 283 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhh
Confidence 34568999999999999999999999999987
No 163
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=33.11 E-value=3.3e+02 Score=23.76 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 199 QDKVLRSFAEMENVKDRTIREAENS 223 (323)
Q Consensus 199 kDkllRa~AEfENyRKRteRE~Eea 223 (323)
+|.|.-+...+..+++-+++++.+.
T Consensus 88 k~eYk~llk~y~~~~~~L~k~I~~~ 112 (126)
T PF09403_consen 88 KDEYKELLKKYKDLLNKLDKEIAEQ 112 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554443
No 164
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.87 E-value=4e+02 Score=24.67 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 020610 201 KVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVAD 240 (323)
Q Consensus 201 kllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlD 240 (323)
++..+..++.|++.++-.+.+.....-+.+|++.=|..+-
T Consensus 65 kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~K 104 (200)
T cd07637 65 KFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFK 104 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4556677778888888887777777777777776665443
No 165
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.48 E-value=1.3e+02 Score=25.17 Aligned_cols=37 Identities=5% Similarity=-0.096 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 210 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfE 210 (323)
.-++..++++++++++.++++.+.|..++.++.-+.+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~d 65 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQE 65 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 4456666777777777777777777777776665443
No 166
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.42 E-value=2.5e+02 Score=30.32 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 238 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPV 238 (323)
|.+.+.++...+..++.+++.++..+..+..+.+..+....+ ....+.+.+=+.+|||=
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~---le~~~~l~~k~~~lL~d 391 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEE---LEEELKLKKKTVELLPD 391 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC
Confidence 344444444444444444444444444444444433322221 12233344444455553
No 167
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.41 E-value=41 Score=35.53 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLR 204 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllR 204 (323)
+.++|++|+.+|++|++|+.++++++-+
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccch
Confidence 3346777777777777776655555443
No 168
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.33 E-value=4.5e+02 Score=27.49 Aligned_cols=42 Identities=7% Similarity=0.205 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
..+..+.|+.+|+.++.++..+..++.+...+...+++++..
T Consensus 57 ~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 57 QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 345566677777778888888888888888888777776643
No 169
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.27 E-value=5.1e+02 Score=25.68 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
|..++.+++.++..+...+.+-.-++..+.+..+++++.+.+++.....
T Consensus 259 l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~ 307 (444)
T TIGR03017 259 LKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTS 307 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333345667888899999888887765543
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.95 E-value=3.5e+02 Score=23.67 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRS 205 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa 205 (323)
.++...+.++++++..++.++..+...+..+
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544444444433
No 171
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=31.92 E-value=5.1e+02 Score=25.51 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=44.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhHHhH
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS---------KKFAIQNFAKALLDVADN 241 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eea---------kkfAiekfakdLLPVlDN 241 (323)
...++++...+..++.+|....++.+++...+..-.++.+--+.-...+.+.. .+-..+.=+...+|.++.
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~ 93 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEE 93 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666766666666666555443333333333222221111 122234555678899999
Q ss_pred HHHHhhhhhh
Q 020610 242 LGRASSVVKE 251 (323)
Q Consensus 242 LERALe~v~e 251 (323)
-..|+..++.
T Consensus 94 A~~al~~l~k 103 (344)
T PF12777_consen 94 AQEALKSLDK 103 (344)
T ss_dssp HHHHHHCS-H
T ss_pred HHHHHHhCCH
Confidence 8888888764
No 172
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=31.90 E-value=4.3e+02 Score=24.65 Aligned_cols=55 Identities=7% Similarity=-0.033 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCccc
Q 020610 227 AIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSH 295 (323)
Q Consensus 227 AiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I 295 (323)
-.++-+..+..-+++|+..+..+... ..-..++.|+..-.+.|.++.....|..|
T Consensus 78 ~~E~ql~q~~~ql~nLEq~~~~iE~a--------------~~~~ev~~aLk~g~~aLK~~~k~~~idkV 132 (191)
T PTZ00446 78 LYEQEIENILNNRLTLEDNMINLENM--------------HLHKIAVNALSYAANTHKKLNNEINTQKV 132 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34666788888889999887666532 11245778888888888888888887754
No 173
>PRK10869 recombination and repair protein; Provisional
Probab=31.85 E-value=3.1e+02 Score=28.96 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 218 REAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 218 RE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
.+.-..++.+...|.+.+...+.+|...
T Consensus 362 ~~LS~~R~~aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 362 QKLHQSRQRYAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455566666677777777777776653
No 174
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.71 E-value=1.2e+02 Score=27.23 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 209 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEf 209 (323)
+..++++++.+|++.+.+++.++.+......||
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555556666666666666666665555554
No 175
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.64 E-value=2.8e+02 Score=22.40 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~ 220 (323)
..+++..+.+||..++-.++-++++.+.+....-.++-.+..+..=.
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~ 49 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT 49 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999988888888888888888776666666555544433
No 176
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.95 E-value=2e+02 Score=27.69 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 212 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENy 212 (323)
..|=+.....+||+++.....++..++.++..++||-..+
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677777777777777777777776666666664443
No 177
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.70 E-value=2.2e+02 Score=26.12 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~ 220 (323)
.|...+++++.+++.|++++..+..++.-..-||+-+-..+.|-+
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677777777777777777667777776666655543
No 178
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=30.53 E-value=3.2e+02 Score=25.84 Aligned_cols=52 Identities=23% Similarity=0.237 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDK-----VLRSFAEMENVKDRTIREAENSKKFAIQ 229 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDk-----llRa~AEfENyRKRteRE~EeakkfAie 229 (323)
...+..+++++..|++++....+. +.-+....++.+.....+.....+.|..
T Consensus 43 l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~ 99 (212)
T COG3599 43 LDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASA 99 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666553 4455566688888888887777776654
No 179
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.31 E-value=3.5e+02 Score=23.49 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
.|+..++.....|..|++++......+.+..+.++.|++.++......++
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 180
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=30.17 E-value=3.8e+02 Score=23.59 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVL-RSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNL 242 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkll-Ra~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNL 242 (323)
.+....+++.+.+|...+++..++.+... .+.+..++.+..++++.+..+..|...+-..--..+.+|
T Consensus 67 ~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l 135 (174)
T PRK07352 67 RQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQL 135 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554443333 233344444444444444444444444443333333333
No 181
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.14 E-value=4e+02 Score=23.71 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNE---EMKQMQDKVLRSFAEMENVKDRTIREAEN-SKKFAIQNFAKA 234 (323)
Q Consensus 175 deL~~~laelEeeL~~lee---EleElkDkllRa~AEfENyRKRteRE~Ee-akkfAiekfakd 234 (323)
+.+..++......|+.|+. .+++|+.++..+.++++-.....+.++.. .+.+|+...+..
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~ 93 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKG 93 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544 34445555555555555333333333322 334455544433
No 182
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=29.78 E-value=2e+02 Score=32.60 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAE------------------------MENVKDRTIREAENSKKFAIQNFAKALLDVAD 240 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AE------------------------fENyRKRteRE~EeakkfAiekfakdLLPVlD 240 (323)
.+||+.|-+++.+..+.|++.+|+ ++++..|++.-.+.-...+.+.++..|=..++
T Consensus 522 deEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~~A~qlL~qlq~mme 601 (851)
T TIGR02302 522 DEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLLSQLQQMMN 601 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 578888899999999999887764 55567777777777778888888888888888
Q ss_pred HHHHH
Q 020610 241 NLGRA 245 (323)
Q Consensus 241 NLERA 245 (323)
||..+
T Consensus 602 nlq~~ 606 (851)
T TIGR02302 602 NLQMG 606 (851)
T ss_pred HHhcc
Confidence 88854
No 183
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.76 E-value=2.3e+02 Score=27.91 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
.+..++++.++.+|.++-.+++++.+-+|+..+
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777766554
No 184
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.64 E-value=2.6e+02 Score=21.46 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN 211 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfEN 211 (323)
|...+..|...+..++.++...++...|+-.-++|
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444
No 185
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=29.44 E-value=4e+02 Score=23.59 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVL-RSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 237 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkll-Ra~AEfENyRKRteRE~EeakkfAiekfakdLLP 237 (323)
...|.+.-.+..+.+...+++.+..+++.+ .+.++.++.+.+.+.+++..+..++..+=..++.
T Consensus 80 e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~ 144 (167)
T PRK08475 80 LKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLN 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 186
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.40 E-value=2e+02 Score=31.67 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 215 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKR 215 (323)
.+.....++|.|+..|+.|++...+++..+..|...||+.
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666778888888888888888888888888877777664
No 187
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=28.81 E-value=4.3e+02 Score=23.66 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
+.+..++.++.+++..+..++++|...-..+.-=..|..+++..-.+..+..|+...|......-.+
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~ 229 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEA 229 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544333333335555666666666677777766655443333
No 188
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=28.76 E-value=2.2e+02 Score=22.61 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 209 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEf 209 (323)
+.+++.++..++..++..++.++++++..+..+..++
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666677777777777777777776665554
No 189
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=28.69 E-value=6.2e+02 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=17.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQ 199 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElk 199 (323)
.+.++|...++.|+++-..++.++..++
T Consensus 20 ~t~~~l~~~~~sL~qen~~Lk~El~~ek 47 (310)
T PF09755_consen 20 ATREQLRKRIESLQQENRVLKRELETEK 47 (310)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4557777777777766666555554433
No 190
>PRK04325 hypothetical protein; Provisional
Probab=28.68 E-value=2.9e+02 Score=21.71 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
..+|+..++=.+.-++.|.+.+.+....+.++.+.+..+..|+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777888888887777777777777888877774
No 191
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=28.51 E-value=5.2e+02 Score=24.53 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVl 239 (323)
.+++.++.+.+....+.+.+|.+.-.-+..=-.|.++++-.-.+-.+..|++..+..-
T Consensus 162 ~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~q 219 (234)
T cd07664 162 QQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQ 219 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443445556666666666677777666533
No 192
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=28.28 E-value=3.1e+02 Score=28.93 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFA 207 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~A 207 (323)
.+.+.+.++|.+|..|++|...+.++..+..|
T Consensus 45 ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 45 AIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777888887777777766444
No 193
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.26 E-value=2.9e+02 Score=21.60 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
.+..+++.++.++.+++.+..++......+.+++..+
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666666666666665543
No 194
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=28.25 E-value=1.1e+02 Score=27.78 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020610 204 RSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 204 Ra~AEfENyRKRteRE~Eeakkf 226 (323)
+=.++|++|+.++.+|++..++|
T Consensus 70 YWK~eFe~Y~~~a~~Em~KLi~y 92 (152)
T PF11500_consen 70 YWKEEFESYHEKAEKEMEKLIKY 92 (152)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477799999999999888665
No 195
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.95 E-value=2.8e+02 Score=22.85 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
.+..++..++.++..++.+..+..++...+.+.++.++.
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666667777777777777776666543
No 196
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=27.76 E-value=4.4e+02 Score=23.48 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 194 EMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 194 EleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
+...++....++.+|++.++.++..|+...+.
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888888888888776654
No 197
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.72 E-value=2.6e+02 Score=27.50 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=10.4
Q ss_pred CCCCCccchhhhhc
Q 020610 303 EHLYEPGCYGSMFN 316 (323)
Q Consensus 303 ge~FDP~~HEAV~q 316 (323)
.++|+|..+.-+..
T Consensus 324 ~G~f~~~~R~~l~~ 337 (344)
T PF12777_consen 324 LGPFTPEYRQELLK 337 (344)
T ss_dssp CCCTSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 35688888887764
No 198
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=27.67 E-value=1e+02 Score=26.15 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
++..+.++..++.++..+.|+|-...--+|.|.++..
T Consensus 54 le~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 54 LEQVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555666666666666666666666666666554
No 199
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.65 E-value=1e+03 Score=27.79 Aligned_cols=41 Identities=5% Similarity=0.076 Sum_probs=29.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 212 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENy 212 (323)
.+.+++...+..++.++..+..++..+...+.....++..+
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888666666666555555555555
No 200
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.55 E-value=2.9e+02 Score=21.25 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
.+|+..++=.+.-++.|.+.+.....++.++...+..++.|+..
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666654
No 201
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.35 E-value=2.6e+02 Score=23.44 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 191 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 191 leeEleElkDkllRa~AEfENyRKRteRE~Eeak 224 (323)
+...+..+.+++..+..+.+-+++.+.+..++.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666655555444
No 202
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=27.30 E-value=5.2e+02 Score=24.17 Aligned_cols=72 Identities=7% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 168 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR------------SFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 168 se~~ls~deL~~~laelEeeL~~leeEleElkDkllR------------a~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
.+.+-...+.....++-++++...+++..++.+.... +.++.+.++.+...+++..+.-+...+-..+
T Consensus 46 ~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei 125 (246)
T TIGR03321 46 ADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRT 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHH
Q 020610 236 LDVA 239 (323)
Q Consensus 236 LPVl 239 (323)
..+.
T Consensus 126 ~~la 129 (246)
T TIGR03321 126 GAEV 129 (246)
T ss_pred HHHH
No 203
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=27.23 E-value=2.5e+02 Score=27.00 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=15.5
Q ss_pred CchhhhccCHHHHHHHHHHHH
Q 020610 165 DSESEIELSRDDLVKLLKERE 185 (323)
Q Consensus 165 ~~~se~~ls~deL~~~laelE 185 (323)
+..+....+.++|..++++..
T Consensus 76 ~~~~~~~~~l~~l~~Ll~e~~ 96 (335)
T PF08429_consen 76 DQKSRNKLTLEELEALLEEIE 96 (335)
T ss_pred cccccccCCHHHHHHHHHHHh
Confidence 334567789999988888864
No 204
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.18 E-value=4.5e+02 Score=23.38 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 165 DSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDK------------VLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (323)
Q Consensus 165 ~~~se~~ls~deL~~~laelEeeL~~leeEleElkDk------------llRa~AEfENyRKRteRE~EeakkfAiekfa 232 (323)
+.-.+.+-...+....+++-+++|...+.+..++.+. ...+.++.+.+....+++++..+.-+...+-
T Consensus 65 ~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~ 144 (184)
T PRK13455 65 SELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVR 144 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHH
Q 020610 233 KALLDVA 239 (323)
Q Consensus 233 kdLLPVl 239 (323)
..+..+.
T Consensus 145 ~~i~~lA 151 (184)
T PRK13455 145 DRAVSVA 151 (184)
T ss_pred HHHHHHH
No 205
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.89 E-value=5e+02 Score=23.85 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 020610 271 SLLEGVEMTEKQLGEVKF 288 (323)
Q Consensus 271 sL~eGVeMI~KqL~kVLe 288 (323)
.+..-+.....++..-|.
T Consensus 137 ~l~~~l~~~r~~l~~~l~ 154 (302)
T PF10186_consen 137 QLQSQLARRRRQLIQELS 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 206
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.76 E-value=1.6e+02 Score=22.61 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVL 203 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkll 203 (323)
++.+++.||..|...+++++..+.+..
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777666655443
No 207
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.56 E-value=5.1e+02 Score=23.81 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
++++.+|.++++||..|..-+..-....-.+||++
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555666666666665554444444445555553
No 208
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=26.45 E-value=1.6e+02 Score=27.99 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=29.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 204 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllR 204 (323)
.+...|..++.++++.|-.|+.++..|..+|+-
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkYLE 89 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKYLE 89 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999964
No 209
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=26.40 E-value=2.8e+02 Score=24.12 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELL 188 (323)
Q Consensus 174 ~deL~~~laelEeeL 188 (323)
+++-.+.+.+|++++
T Consensus 99 ee~Q~~~i~~L~~E~ 113 (144)
T PF11221_consen 99 EEEQLKRIKELEEEN 113 (144)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444443333
No 210
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=26.38 E-value=3e+02 Score=25.58 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
...+...+...+..+..++.++.....+...+-+++..+.+|+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~ 46 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQ 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 211
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=26.30 E-value=4.1e+02 Score=25.36 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HHhHHHHHhh
Q 020610 194 EMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD-----------VADNLGRASS 247 (323)
Q Consensus 194 EleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLP-----------VlDNLERALe 247 (323)
.+...-.++....-++++|+.++..+.++....-+++|+++-|. +-++++.|+.
T Consensus 62 ~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~ 126 (215)
T cd07631 62 VMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAIN 126 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34455567778888999999999999999999999999888776 4456677763
No 212
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=26.22 E-value=3e+02 Score=25.52 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
....+.++...|...+..++.|..++.-++.||++.|+-..|
T Consensus 135 AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~k 176 (188)
T PF05335_consen 135 AQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYK 176 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777777777777776665444
No 213
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.10 E-value=5.8e+02 Score=24.31 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020610 186 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 238 (323)
Q Consensus 186 eeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPV 238 (323)
.+|++.+....++..++.|.-..|..=++|..++..+-.+.++..|+...+..
T Consensus 164 ~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~ 216 (230)
T cd07625 164 RQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEY 216 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566667777777777777777777777777777777777666544
No 214
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.08 E-value=4.6e+02 Score=23.13 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 020610 168 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL-RSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGR 244 (323)
Q Consensus 168 se~~ls~deL~~~laelEeeL~~leeEleElkDkll-Ra~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLER 244 (323)
.+.+-...+....+++-+.+|...+.+..++.+... .+.+..++++..+.++.+.....|...+-..---++..|..
T Consensus 57 ~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ 134 (173)
T PRK13460 57 NKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQN 134 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 215
>PRK00295 hypothetical protein; Provisional
Probab=25.92 E-value=3.1e+02 Score=21.18 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
..+|+..++=.+.-++.|.+.+......+.++.+.+..++.|+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777777777777654
No 216
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.77 E-value=5.2e+02 Score=23.61 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRK 214 (323)
...++...+..++.++..++.++.+++.++..+...++..+.
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888877777766655554433
No 217
>smart00338 BRLZ basic region leucin zipper.
Probab=25.65 E-value=2.8e+02 Score=20.56 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDK 201 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDk 201 (323)
|+..+..++.+...|..++..+...
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 218
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=25.64 E-value=1.6e+02 Score=33.01 Aligned_cols=78 Identities=19% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCcchhchhhhhhhccccccccCCCCCchhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 139 PQSTVSQSNKRRRRVSKQTAFSDSDSDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
+++|+.+.+--+-+.-+++-++.+=+=.+.....+. |..+...+...+.+......+.+++|.+++-|.+|++-|+.+
T Consensus 673 dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sl--lraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~ 750 (961)
T KOG4673|consen 673 DSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSL--LRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQ 750 (961)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665443333333333 445555666777777777788888888888888888877654
No 219
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.43 E-value=3.1e+02 Score=21.00 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
++...+...+..++..++.+..+.....+...+..|+.+++.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444444444444444445544443
No 220
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.29 E-value=2.7e+02 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
.++++++..+++..++++..+..++++-+++++.+..+.++
T Consensus 218 ~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 218 KEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34455555666666666666666666666666666655443
No 221
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=25.23 E-value=36 Score=30.78 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=21.7
Q ss_pred ccccccccccccc-ccccccccccccCCCC
Q 020610 47 KLTQVSLFHQTTL-NSSIFQRFGFSSASPE 75 (323)
Q Consensus 47 ~~~~~~~~~~~~~-~~~~~~~f~~~~~s~~ 75 (323)
+.+||.++..-.+ +-..||-|||+|.-|.
T Consensus 15 Q~vQv~~~agE~~~~ve~~q~yGftS~Pp~ 44 (162)
T PF06890_consen 15 QTVQVQGLAGETRDDVERFQQYGFTSVPPP 44 (162)
T ss_pred EEEEEEecCCchhcCcchhhcCccccCCCC
Confidence 4489988876555 3578999999987554
No 222
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.22 E-value=5.6e+02 Score=23.87 Aligned_cols=72 Identities=6% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhh
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 247 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe 247 (323)
.+++..+-.++.+++..++.+++.++....+..+-.+..++.+.+-....... +..-..|.|++..+-..|.
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~--~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI--EETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
No 223
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=25.20 E-value=4.6e+02 Score=30.18 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCC
Q 020610 183 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDT 262 (323)
Q Consensus 183 elEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~ 262 (323)
+++..+..++.+++.+..=-+++..+|+.+++|...=..... +|-.-.+.|...+..++.
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~---------dl~~a~~~l~~~i~~~d~----------- 1005 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRE---------DLEEAKEKLLEVIEELDK----------- 1005 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-----------
Q ss_pred CCchhhHHhHHHHHHHHHHHHHHHHHhCC
Q 020610 263 AGAVPLLKSLLEGVEMTEKQLGEVKFYYC 291 (323)
Q Consensus 263 ~~~~e~lksL~eGVeMI~KqL~kVLek~G 291 (323)
.....+.+.|.-|.+.|..+|....
T Consensus 1006 ----~~~~~f~~~f~~In~~F~~if~~L~ 1030 (1163)
T COG1196 1006 ----EKRERFKETFDKINENFSEIFKELF 1030 (1163)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhC
No 224
>PF05218 DUF713: Protein of unknown function (DUF713); InterPro: IPR007883 This family contains proteins of unknown function from Caenorhabditis species.
Probab=25.17 E-value=5.3e+02 Score=23.57 Aligned_cols=86 Identities=20% Similarity=0.136 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCchhhHHhHHHHHH
Q 020610 200 DKVLRSFAEMENVK--DRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVE 277 (323)
Q Consensus 200 DkllRa~AEfENyR--KRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~e~lksL~eGVe 277 (323)
-++.+...+|++.. ++...+-..-...-+..|.+.++..+|.|.-|-..++.-..+ ....-=++-|-.-+-
T Consensus 46 ~~~~~~f~~Fe~~~~~~~~~~e~~~~~~~E~~~l~~~v~~a~~~l~~~f~~L~~L~~~-------~~D~iFlkvLqK~i~ 118 (182)
T PF05218_consen 46 VRLKNRFSDFEDEIKFKKTDEEDEEDLQSEISNLHKSVMSAYNMLENAFENLKKLSEK-------FPDKIFLKVLQKCIS 118 (182)
T ss_pred HHHHHHHHHHhHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCcchHHHHHHHHH
Confidence 34445667776663 334444444455678899999999999999998777642111 001123455666677
Q ss_pred HHHHHHHHHHHhCCC
Q 020610 278 MTEKQLGEVKFYYCF 292 (323)
Q Consensus 278 MI~KqL~kVLek~GV 292 (323)
.+..+|..|+...+.
T Consensus 119 ~va~~L~~il~~l~~ 133 (182)
T PF05218_consen 119 DVANKLLEILESLDE 133 (182)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777776543
No 225
>PRK13410 molecular chaperone DnaK; Provisional
Probab=24.96 E-value=6.9e+02 Score=27.14 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=9.0
Q ss_pred hccCHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKER 184 (323)
Q Consensus 170 ~~ls~deL~~~lael 184 (323)
..++.+++...+++.
T Consensus 500 ~~ls~~ei~~~~~~~ 514 (668)
T PRK13410 500 STLSEQEVNRMIQEA 514 (668)
T ss_pred ccCCHHHHHHHHHHH
Confidence 346777766655554
No 226
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=24.82 E-value=6.7e+02 Score=24.60 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=47.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhh
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 251 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~e 251 (323)
+..++|.+ +..+...|......=+.+-..+..+.++|...|+-. .......+.++.+|.-.+|-+.--.+.+.+
T Consensus 238 lf~~eL~k-~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~-----~~~~~~Re~~l~~L~~ay~~y~el~~~l~e 311 (337)
T cd09234 238 LFKEELKK-HDQLVNLIEQNLAAQENILKALTEANAKYAPVRKAL-----SETKQKRESTISSLIASYEAYEDLLKKSQK 311 (337)
T ss_pred HHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44445533 444444444433333445555556666665443321 223333455555666666666555544432
Q ss_pred hcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHH
Q 020610 252 NFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKF 288 (323)
Q Consensus 252 e~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLe 288 (323)
...|+.++..+...|.+-..
T Consensus 312 -----------------G~~FY~dL~~~v~~~~~~~~ 331 (337)
T cd09234 312 -----------------GIDFYKKLEGNVSKLLQRIK 331 (337)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHH
Confidence 24567776666666655443
No 227
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=24.79 E-value=3.7e+02 Score=21.58 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
+..++...-.++...|..++.++++|..-+.-+.++-..| .-...|+..-+.|
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~f 85 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQF 85 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHH
Confidence 6677777888888888888999999988888877776666 5667777766655
No 228
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.64 E-value=5.3e+02 Score=23.38 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 198 MQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 198 lkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
++.++..+...|+.+.+.+.+|++.-..-
T Consensus 139 l~~ev~~a~~~~e~~~~~~~~E~~rF~~~ 167 (200)
T cd07624 139 LLKEVEKLQDKLECANADLKADLERWKQN 167 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555544433
No 229
>PRK14156 heat shock protein GrpE; Provisional
Probab=24.61 E-value=5.5e+02 Score=23.57 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 232 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfa 232 (323)
+.++++++...+.-+.+ ++.+--.|+..|.++.++......-...-=.+.+|-
T Consensus 39 l~~e~~elkd~~lR~~A---EfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLe 91 (177)
T PRK14156 39 ANERADEFENKYLRAHA---EMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLE 91 (177)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 44444444444433443 444445677778888877776655544443444443
No 230
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.50 E-value=5.6e+02 Score=23.60 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHhCCCcc
Q 020610 269 LKSLLEGVEMTEKQLGEVKFYYCFPS 294 (323)
Q Consensus 269 lksL~eGVeMI~KqL~kVLek~GVe~ 294 (323)
+..+.+.++-...+|..||...++.|
T Consensus 152 l~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 152 LQALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 56677888889999999999988885
No 231
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=24.47 E-value=6e+02 Score=25.09 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF--AEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 243 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~--AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLE 243 (323)
....|+.++...|.+....++++..++-+-++.. ..|.=++.+.+|.+- +..+.+.||..+|+--
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~I------la~~gk~Ll~lldd~p 232 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAI------LAEYGKRLLELLDDTP 232 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHTTS----
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccCCC
Confidence 4567888888888888888888888887766533 566667777766543 3457777777776543
No 232
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.41 E-value=3.6e+02 Score=28.81 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCcccccCCCCCCCCCCccchhhhh
Q 020610 282 QLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMF 315 (323)
Q Consensus 282 qL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~ 315 (323)
-|..+.+=+|+.++ ..+||...-|++
T Consensus 328 pFE~lv~mYg~P~Y--------~EiDPT~~~ai~ 353 (646)
T PRK05771 328 PFESLTEMYSLPKY--------NEIDPTPFLAIF 353 (646)
T ss_pred hHHHHHHHcCCCCC--------CCcCCccHHHHH
Confidence 33444556777543 347887776664
No 233
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.96 E-value=4.4e+02 Score=22.23 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRK 214 (323)
..+|-+.+..+++.|..+-+++.+++..+..+..|-..+|.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999888876555543
No 234
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.88 E-value=1.1e+03 Score=27.80 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-hHHhHHHHHhhhhhhh
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF-AIQNFAKALL-DVADNLGRASSVVKEN 252 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf-AiekfakdLL-PVlDNLERALe~v~ee 252 (323)
+++...+.++-+++.++...+.+.+.++--..|++--++++.......-+.. .-++-+..+| .+.+++.+|-..+...
T Consensus 421 ~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 421 EDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555555666666666666666655443333222 2223333333 3455666665544321
Q ss_pred cccCCCCCCCCCchhhHHhHHHHHHHHHH
Q 020610 253 FLKIDPSNDTAGAVPLLKSLLEGVEMTEK 281 (323)
Q Consensus 253 ~~~~d~s~d~~~~~e~lksL~eGVeMI~K 281 (323)
...++..||..+.+
T Consensus 501 ---------------~~r~v~nGi~~v~~ 514 (1200)
T KOG0964|consen 501 ---------------MNRSVANGIDSVRK 514 (1200)
T ss_pred ---------------ccchhhhhhHHHHH
Confidence 12568889887743
No 235
>PLN02372 violaxanthin de-epoxidase
Probab=23.66 E-value=6e+02 Score=26.85 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=13.2
Q ss_pred CcccccccccccccCCCcc
Q 020610 30 SPALSNQFHSLVFESPNKL 48 (323)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~ 48 (323)
--+|.-|+|..-...++||
T Consensus 220 yD~FdCQ~h~F~~~~~~kl 238 (455)
T PLN02372 220 FDTFDCQLHEFTAEDPDKL 238 (455)
T ss_pred CCcccccceeeecCCCCce
Confidence 4566777777766667776
No 236
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.64 E-value=7.4e+02 Score=24.70 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVl 239 (323)
....|+.+|+.|+..|....+.+-+-..++-.+.||-||- ++.+...+--++.+.+..-+++
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~-----~~~ek~Hke~v~qL~~k~~~~l 287 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQ-----KELEKKHKERVQQLQKKKEESL 287 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777666666666666666763332 5566666666666666544444
No 237
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.51 E-value=4.1e+02 Score=26.15 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=6.4
Q ss_pred HHhhHHhHHHHHhh
Q 020610 234 ALLDVADNLGRASS 247 (323)
Q Consensus 234 dLLPVlDNLERALe 247 (323)
+-=.++++=-||+.
T Consensus 98 ~r~~~l~~raRAmq 111 (265)
T COG3883 98 ERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444445543
No 238
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=23.34 E-value=4.8e+02 Score=22.37 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 191 KNEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (323)
Q Consensus 191 leeEleElkDkllRa~AEfENyRKRteRE~ 220 (323)
.-+++.+...++.+...|++.++.+..+-.
T Consensus 129 ~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~ 158 (229)
T PF03114_consen 129 EFKEIKKLIKKREKKRLDYDSARSKLEKLR 158 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666777788889999999988633
No 239
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.32 E-value=6.9e+02 Score=26.60 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=45.5
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhH
Q 020610 165 DSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKV----LRSFAEMENVKDRTIREAENSKKF--AIQNFAKALLDV 238 (323)
Q Consensus 165 ~~~se~~ls~deL~~~laelEeeL~~leeEleElkDkl----lRa~AEfENyRKRteRE~Eeakkf--AiekfakdLLPV 238 (323)
|...+.-....++.++++.+..+-+.+.+|.+.|+.+. .|...-+++.+.++.++++....- ..+..+.+|..=
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445666677777777777777777777665433 356666777777777776665443 233344444443
Q ss_pred HhH
Q 020610 239 ADN 241 (323)
Q Consensus 239 lDN 241 (323)
+|+
T Consensus 139 l~~ 141 (472)
T TIGR03752 139 LAG 141 (472)
T ss_pred Hhh
Confidence 433
No 240
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.29 E-value=4.6e+02 Score=22.15 Aligned_cols=35 Identities=0% Similarity=0.116 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
++..++.+++.++.+...+......++.+...+++
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555544
No 241
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.17 E-value=8.4e+02 Score=25.90 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVl 239 (323)
..++...-..++++....+++++.+.+.-.++..+|+|+=.++=.++.....-..+.-+..||..+
T Consensus 80 ~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl 145 (475)
T PRK10361 80 EADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPL 145 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
No 242
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.16 E-value=3.4e+02 Score=21.20 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 209 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEf 209 (323)
.+.|...++.++.+++.+++++..+..++..+.+.+
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667777777777777776666655543
No 243
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.13 E-value=4.1e+02 Score=21.55 Aligned_cols=45 Identities=11% Similarity=0.314 Sum_probs=24.4
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
.+.+.++..+.+.+ .++.++++++++.+.+....+.+.-++..++
T Consensus 81 ve~~~~eA~~~l~~---r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 81 VEKSLEEAIEFLKK---RLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred EEecHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544333333 3455556666666666666666666665554
No 244
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.04 E-value=4.3e+02 Score=21.70 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN 211 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfEN 211 (323)
+.|+..|...-+-|.-|+-++++++++-..+..+.++
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777777777777777666666555
No 245
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.91 E-value=5.2e+02 Score=22.61 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHh
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 246 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERAL 246 (323)
+.++..++..+++++.+++..+..+.+++.+++...--+--....-..+.=+..|-.=++.|....
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455566677778888888888888888888777665332222222222333444444455555433
No 246
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=22.88 E-value=3.2e+02 Score=29.20 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
.+.+||..++-+|.--++.++++...--++++.-+.|-.-+|-|++-|+++.++.
T Consensus 569 ~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 569 NSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKA 623 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 3566777777776666666665554444555555555566777888888777754
No 247
>PRK04406 hypothetical protein; Provisional
Probab=22.78 E-value=3.9e+02 Score=21.17 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
-..+|+..++=.+.-++.|.+.+......+.++.+.+..++.|+.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666663
No 248
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.70 E-value=2.5e+02 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
..+++....+|....-..+.|..++.|-.+|+|-.|+|++.
T Consensus 118 ~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 118 QVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555566777788888888888887653
No 249
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.62 E-value=9.3e+02 Score=25.47 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=32.7
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 166 SESEIELSRDDLVKLLKEREELLMAKNEEMKQM-QDKVLRSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 166 ~~se~~ls~deL~~~laelEeeL~~leeEleEl-kDkllRa~AEfENyRKRteRE~Eeak 224 (323)
+....-.+..-|.++++.|+++++...+++... +.--.+..-.|---|+|++|.+++..
T Consensus 234 ~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~ 293 (439)
T KOG2911|consen 234 SVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKV 293 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHH
Confidence 344455566677777777777777776666432 22222333344444555555555443
No 250
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.49 E-value=6.2e+02 Score=23.35 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE 208 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AE 208 (323)
.+++.+.+.+.+...++.++.++..+++.++..
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555444555566666666555554444
No 251
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=22.49 E-value=6.4e+02 Score=23.50 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhHHhHHHHHhhhhh
Q 020610 226 FAIQNFAKALLDVADNLGRASSVVK 250 (323)
Q Consensus 226 fAiekfakdLLPVlDNLERALe~v~ 250 (323)
...+.++..|...++.+.-....+.
T Consensus 241 ~~r~~~~~~l~~a~~~y~el~~~l~ 265 (296)
T PF13949_consen 241 KERESALQRLEAAYDAYKELSSNLE 265 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4445566666666666665555444
No 252
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.47 E-value=1.3e+03 Score=27.21 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhh
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQ---DKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 251 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElk---DkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~e 251 (323)
.+++.++...+.+|..++.+++.++ .++..+.+++++-.+-+.--..+.........+.++-.+.+.++-.-..+++
T Consensus 680 ~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike 759 (1174)
T KOG0933|consen 680 KQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKE 759 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666665543 3455666677665555544444454455556666666666666666555544
Q ss_pred hcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHh
Q 020610 252 NFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFY 289 (323)
Q Consensus 252 e~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek 289 (323)
. ...++.--+-|.++.+.+.++...
T Consensus 760 ~-------------~~~~k~~~~~i~~lE~~~~d~~~~ 784 (1174)
T KOG0933|consen 760 K-------------ERALKKCEDKISTLEKKMKDAKAN 784 (1174)
T ss_pred H-------------HHHHHHHHHHHHHHHHHHhHhhhh
Confidence 2 134455556666777766666543
No 253
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.46 E-value=4.3e+02 Score=21.51 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADN 241 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDN 241 (323)
.-++-++++++++...+.....-++--.+++.++.+.-+++.. +-+.-++.||--+|+
T Consensus 21 ~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~--~WQerlrsLLGkme~ 78 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN--GWQERLRALLGKMEE 78 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcc
Confidence 3344444444444444444444555555566655554444433 446677777765554
No 254
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=22.45 E-value=5.6e+02 Score=23.11 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
+.+.|..|..++.+.+++...+..+...||..+.++.......
T Consensus 108 ~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~ 150 (184)
T PF05791_consen 108 LKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTD 150 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444666677888888888888888888888888887776644
No 255
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=22.38 E-value=5.3e+02 Score=22.56 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME--------NVKDRTIREAENSKK 225 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfE--------NyRKRteRE~Eeakk 225 (323)
++.--....+++++.+..++.+++.|.-+..|+.++.. +++.....|+.+...
T Consensus 14 Te~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e 74 (131)
T PF11068_consen 14 TEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLE 74 (131)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Confidence 33334456677788888889999999988888888864 567777666655443
No 256
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=22.28 E-value=9.2e+02 Score=25.32 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
+..+.+.+++.+....+++..+.+...++..+|+|...++..+......--.+..++.||.+.-...-+
T Consensus 75 l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~ 143 (448)
T COG1322 75 LNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEK 143 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666777788888899999999999999999998888888888888888665444333
No 257
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.13 E-value=6.5e+02 Score=23.51 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 020610 199 QDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVAD 240 (323)
Q Consensus 199 kDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlD 240 (323)
-.++..+..+++|+++++-...+.....-.++|++.-|.-+-
T Consensus 63 l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vK 104 (200)
T cd07639 63 LEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFR 104 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345566778889999999888888888888888887766543
No 258
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.00 E-value=7.3e+02 Score=26.88 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Q 020610 188 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGR 244 (323)
Q Consensus 188 L~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLER 244 (323)
++.++.++..++...-|+..++.-+|+.++.|.- .+-..++=+.+||.=++.+.+
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl--lr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDETL--LRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHh
Confidence 3344444444444444444555545544444433 233335555666666655553
No 259
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.98 E-value=3.9e+02 Score=25.69 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhh
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEM-ENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 247 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEf-ENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe 247 (323)
++++..+.++++.++.++..+.++| .+|-+-.+.-+.+.-+ -..+|++-.|-.++++..+.
T Consensus 80 ~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~~pe--w~~~Ir~~~~~~~~v~~r~~ 141 (257)
T PF11348_consen 80 EDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDRHPE--WADIIRRAAPPAEDVRSRFS 141 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChH--HHHHHHhcCCCHHHHHhhcc
Confidence 3445566677777778888877777 5676666666666433 46688888999999988764
No 260
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.97 E-value=8.3e+02 Score=25.66 Aligned_cols=39 Identities=10% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhh
Q 020610 209 MENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVV 249 (323)
Q Consensus 209 fENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v 249 (323)
++.+..|+..-..-.++|+. =+.+++.-++.++.-+...
T Consensus 303 L~ele~RL~~l~~LkrKyg~--s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGA--SVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666653 3556666666666555543
No 261
>PHA02109 hypothetical protein
Probab=21.83 E-value=2.7e+02 Score=26.36 Aligned_cols=31 Identities=32% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAE 208 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AE 208 (323)
.+++-+|+.+|+.|-.|+.+++++++...|+
T Consensus 192 L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~ 222 (233)
T PHA02109 192 LKQISELTIKLEALSDEACQVKHKILNLRAE 222 (233)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777766554
No 262
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=21.76 E-value=5.6e+02 Score=22.57 Aligned_cols=11 Identities=0% Similarity=0.181 Sum_probs=5.1
Q ss_pred CCccchhhhhc
Q 020610 306 YEPGCYGSMFN 316 (323)
Q Consensus 306 FDP~~HEAV~q 316 (323)
+|+..|..+..
T Consensus 155 l~~~~~~~li~ 165 (174)
T PRK07352 155 LDEDAQQRLID 165 (174)
T ss_pred cCHHHHHHHHH
Confidence 44455544443
No 263
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.70 E-value=2.6e+02 Score=26.69 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
..+.+++..+++++++...++..+..+-+++++-.
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555544443
No 264
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.41 E-value=2.5e+02 Score=23.35 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
++.+++.+|+.++..++.|++ ++.-.+.|-+-|++++
T Consensus 75 ~~~~ei~~L~~el~~L~~E~d-----iLKKa~~~~~~~~~~~ 111 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENE-----LLKEAVEYGRAKKWIA 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhchhhhhh
Confidence 344555555555555554443 4555566666666553
No 265
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.37 E-value=4.5e+02 Score=26.48 Aligned_cols=13 Identities=0% Similarity=-0.319 Sum_probs=7.0
Q ss_pred HHHHHHHhCCCcc
Q 020610 282 QLGEVKFYYCFPS 294 (323)
Q Consensus 282 qL~kVLek~GVe~ 294 (323)
.+.++|...||..
T Consensus 301 ~i~~~Lr~~~i~~ 313 (370)
T PF02994_consen 301 PIKKKLREKGIKY 313 (370)
T ss_dssp HHHHHHHHTTS--
T ss_pred HHHHHHHHcCCCc
Confidence 3445577777764
No 266
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=21.28 E-value=7.6e+02 Score=27.22 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhh
Q 020610 188 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 251 (323)
Q Consensus 188 L~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~e 251 (323)
.+.|+...+.|.++|..+.+|++.+|+-+..+ -...-..++...+--.+|.++|.+....+
T Consensus 237 ~e~L~~r~~~L~~k~~~L~~e~~~LK~ELied---RW~~vFr~l~~q~~~m~esver~~~kl~~ 297 (683)
T PF08580_consen 237 CEELEDRYERLEKKWKKLEKEAESLKKELIED---RWNIVFRNLGRQAQKMCESVERSLSKLQE 297 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456666778889999999999998876443 34445566777777788888888765543
No 267
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=21.26 E-value=2.1e+02 Score=21.88 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFA 207 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~A 207 (323)
|+.|+.|++++.+.+.+...+.+
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 268
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.22 E-value=2e+02 Score=23.33 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQ 197 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleE 197 (323)
+|.++...|+.+|.++++++++
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 269
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.19 E-value=3.4e+02 Score=22.32 Aligned_cols=34 Identities=6% Similarity=0.095 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 209 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEf 209 (323)
+|.+.++.++..++.++++.+.+..++..+...+
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666665555443
No 270
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=21.15 E-value=2.7e+02 Score=28.95 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhh
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 247 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe 247 (323)
....++.|+.++++++.||+.++.= +++-+=..-.+|.-...-.-...+.-||--|-|||...-.
T Consensus 142 p~~Ri~~Le~e~~~i~~EI~~l~aG------~~~~ld~~~~~er~~~i~~la~~L~~DFr~V~~~~r~l~r 206 (478)
T PF11855_consen 142 PERRIAELEREIAEIDAEIDRLEAG------DVPVLDDTQARERARQILQLARELPADFRRVEDNFRELDR 206 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665554321 1222222223333334444445666677777777665433
No 271
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=21.11 E-value=2.6e+02 Score=22.67 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=28.2
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 166 SESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 202 (323)
Q Consensus 166 ~~se~~ls~deL~~~laelEeeL~~leeEleElkDkl 202 (323)
.++...-...+|...|+-+|.++..++.++.+|.-++
T Consensus 48 ~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 48 SPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778888888999999888888887776554
No 272
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.10 E-value=3.2e+02 Score=20.75 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020610 198 MQDKVLRSFAEMENVKDR 215 (323)
Q Consensus 198 lkDkllRa~AEfENyRKR 215 (323)
++.++....+++.++++-
T Consensus 59 ~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 59 YKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 273
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.98 E-value=2.2e+02 Score=22.64 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=0.0
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 169 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 202 (323)
Q Consensus 169 e~~ls~deL~~~laelEeeL~~leeEleElkDkl 202 (323)
+.+-+.++-...++.|++++..+++-+.+++++.
T Consensus 49 gi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 49 GIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 274
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=20.95 E-value=7.1e+02 Score=23.49 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhHHhH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQ------NFAKALLDVADN 241 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAie------kfakdLLPVlDN 241 (323)
++.++.++.....++...++.|......+..++.+..++.....+.-.+ .|++++|-.+=+
T Consensus 170 leK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~ 236 (258)
T cd07655 170 VKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHR 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777778888888888888888888887777776665544332 556665554433
No 275
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=20.87 E-value=3.6e+02 Score=29.80 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAE------------MENVKDRTIREAENSKKFAI 228 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AE------------fENyRKRteRE~EeakkfAi 228 (323)
+.++.+.+.|+++++++.++.-.+.++.|+ .|-.+++++|-.+...+..+
T Consensus 636 ~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~ 697 (759)
T KOG0981|consen 636 KSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEI 697 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 344445555666666777777777777655 56666766666666555443
No 276
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.87 E-value=5.9e+02 Score=22.49 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=50.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhh
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN-VKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 250 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfEN-yRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ 250 (323)
+...+|..........++...+++..+...+... ++.+. |+=.+-.-+.........-++..+.-+++.+..++..+.
T Consensus 3 ~d~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~-~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~ 81 (204)
T PF04740_consen 3 LDVSELHSQAESTNSSLKELKEQLESLQKAINQF-ISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIK 81 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456666666666666666666666666554443 33333 666666666666666666777777788888888876555
Q ss_pred h
Q 020610 251 E 251 (323)
Q Consensus 251 e 251 (323)
.
T Consensus 82 ~ 82 (204)
T PF04740_consen 82 D 82 (204)
T ss_pred H
Confidence 4
No 277
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.83 E-value=3.3e+02 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=9.0
Q ss_pred ccCHHHHHHHHHHHHH
Q 020610 171 ELSRDDLVKLLKEREE 186 (323)
Q Consensus 171 ~ls~deL~~~laelEe 186 (323)
.+|.++|...++.+..
T Consensus 7 ~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 7 FLSYEELQQRLASLDP 22 (49)
T ss_dssp GS-HHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhCCH
Confidence 3566677666666543
No 278
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.79 E-value=2.1e+02 Score=22.51 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020610 198 MQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 198 lkDkllRa~AEfENyRKRte 217 (323)
+.+++..+.++++.+++.+.
T Consensus 70 l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 70 LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44445555555555554443
No 279
>PRK14149 heat shock protein GrpE; Provisional
Probab=20.72 E-value=6.9e+02 Score=23.27 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKA 234 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakd 234 (323)
+|..+++++...+.-+.+ ++.+--.|+..|.+++++......-...--.+.+|-+.
T Consensus 47 ~l~~e~~elkd~~lR~~A---efEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerA 102 (191)
T PRK14149 47 DFELKYKEMHEKYLRVHA---DFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGA 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 345555555554444444 44555567777888888877666555544444444433
No 280
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.71 E-value=4.2e+02 Score=20.72 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
-..+|+..++=.+.-++.|.+.+.+....+.++.+.+..++.|+..
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777777777777777777777777777777777777743
No 281
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.55 E-value=4.7e+02 Score=30.65 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
....|.-.++.++++|..|+.|+++--+.++++.-+++-++.+..+-..+.-.|
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788888888888888888888888888888888887777766665544
No 282
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.53 E-value=1.2e+03 Score=27.61 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 212 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENy 212 (323)
..+|...|++++++|..++.++..+..+..++.++++.+
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677777777777777777777777777777776664
No 283
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.48 E-value=6.5e+02 Score=22.82 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHh
Q 020610 191 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 246 (323)
Q Consensus 191 leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERAL 246 (323)
+++++++.++++-++-+++.-=-.|.++++..-.+-++.+|+...+..+..+-.+-
T Consensus 139 l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~W 194 (200)
T cd07624 139 LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAW 194 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666555555566677777777777888887777766654443
No 284
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.47 E-value=1.1e+03 Score=25.32 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q 020610 276 VEMTEKQLGEVKFY 289 (323)
Q Consensus 276 VeMI~KqL~kVLek 289 (323)
+..+.+.+..+|.+
T Consensus 504 ~~~le~~~~~~f~~ 517 (650)
T TIGR03185 504 LQQLEEEITKSFKK 517 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 285
>PRK02119 hypothetical protein; Provisional
Probab=20.39 E-value=4.3e+02 Score=20.74 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
..+|+..++=.+.-|..|.+.+.+....+.++.+.+..++.|+.
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666667777777776666666666677777766664
No 286
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.19 E-value=5.7e+02 Score=26.83 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 218 REAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 218 RE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
.++-..++.+...|.+.+...+++|...
T Consensus 367 ~~Ls~~R~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 367 VALSLIRRKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4444555666667777777777665543
No 287
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.16 E-value=3.6e+02 Score=20.30 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQM 198 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleEl 198 (323)
+.++++.++.++..++.++..+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~ 23 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERL 23 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 288
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.05 E-value=1.1e+03 Score=25.48 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 188 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 188 L~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
|+....+..++...+.++..|++.||++..+
T Consensus 101 l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 101 LDETARERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333344444444444444555555554433
Done!