Query 020610
Match_columns 323
No_of_seqs 142 out of 1171
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ani_A Protein GRPE; chaperone 100.0 6.9E-31 2.4E-35 239.3 13.6 123 179-319 59-181 (213)
2 1dkg_A Nucleotide exchange fac 100.0 3.2E-30 1.1E-34 231.9 10.8 124 177-320 40-163 (197)
3 3a6m_A Protein GRPE, HSP-70 co 100.0 3E-31 1E-35 235.4 1.8 122 177-318 17-138 (177)
4 4ani_A Protein GRPE; chaperone 88.7 5.7 0.0002 36.0 12.1 61 175-235 62-126 (213)
5 3swy_A Cyclic nucleotide-gated 83.2 6.7 0.00023 27.8 7.6 40 184-223 3-42 (46)
6 3swf_A CGMP-gated cation chann 80.0 14 0.00047 28.7 8.9 43 184-226 5-47 (74)
7 3he5_A Synzip1; heterodimeric 79.6 7.9 0.00027 27.3 6.8 42 176-217 7-48 (49)
8 2v71_A Nuclear distribution pr 79.4 34 0.0012 30.5 13.6 74 177-250 54-129 (189)
9 3plt_A Sphingolipid long chain 75.0 30 0.001 31.9 11.3 65 187-251 132-196 (234)
10 3efg_A Protein SLYX homolog; x 71.3 14 0.00049 28.4 7.0 53 172-224 7-59 (78)
11 3mq7_A Bone marrow stromal ant 69.1 18 0.0006 30.4 7.5 48 170-217 51-102 (121)
12 3nmd_A CGMP dependent protein 67.8 20 0.0007 27.6 7.1 44 173-216 20-63 (72)
13 2v66_B Nuclear distribution pr 66.7 53 0.0018 27.0 13.7 72 179-250 3-76 (111)
14 2l5g_B Putative uncharacterize 66.0 13 0.00044 26.0 5.1 36 172-207 2-37 (42)
15 3etw_A Adhesin A; antiparallel 64.6 27 0.00093 29.1 7.9 38 198-247 69-106 (119)
16 2yy0_A C-MYC-binding protein; 63.4 8.6 0.00029 27.7 4.0 32 171-202 18-49 (53)
17 3jsv_C NF-kappa-B essential mo 62.2 55 0.0019 26.4 9.0 38 173-210 3-40 (94)
18 2v4h_A NF-kappa-B essential mo 53.5 95 0.0032 25.7 10.2 38 173-210 25-62 (110)
19 2avr_X Adhesion A; antiparalle 53.5 26 0.00089 29.3 5.9 36 198-245 69-104 (119)
20 2xv5_A Lamin-A/C; structural p 53.3 72 0.0025 24.2 8.4 44 181-224 7-53 (74)
21 3hnw_A Uncharacterized protein 52.7 76 0.0026 26.6 8.8 42 178-219 74-115 (138)
22 3mq7_A Bone marrow stromal ant 51.3 41 0.0014 28.2 6.7 41 178-218 70-110 (121)
23 3hnw_A Uncharacterized protein 50.8 84 0.0029 26.3 8.8 44 175-218 78-121 (138)
24 4emc_A Monopolin complex subun 49.9 1.1E+02 0.0036 27.5 9.6 63 171-239 19-81 (190)
25 3tso_C RAB11 family-interactin 48.9 42 0.0014 26.1 6.0 34 170-203 12-45 (75)
26 3na7_A HP0958; flagellar bioge 47.8 1.5E+02 0.0052 26.4 15.8 47 174-220 34-80 (256)
27 1o5h_A Formiminotetrahydrofola 47.3 1.6E+02 0.0054 26.4 10.9 91 182-287 72-165 (214)
28 3trt_A Vimentin; cytoskeleton, 45.5 69 0.0024 23.6 6.7 26 188-213 51-76 (77)
29 1j1d_B Troponin T, TNT; THIN f 45.2 87 0.003 25.4 7.7 47 170-216 40-86 (106)
30 3ghg_A Fibrinogen alpha chain; 44.8 2.1E+02 0.007 29.5 11.9 18 234-251 107-124 (562)
31 4etp_A Kinesin-like protein KA 44.8 76 0.0026 30.7 8.6 13 281-293 131-143 (403)
32 1gd2_E Transcription factor PA 43.1 38 0.0013 25.7 4.9 13 188-200 31-43 (70)
33 3a6m_A Protein GRPE, HSP-70 co 43.0 14 0.00048 32.3 2.9 38 197-234 48-85 (177)
34 3nmd_A CGMP dependent protein 41.3 57 0.002 25.0 5.7 34 180-213 34-67 (72)
35 2jee_A YIIU; FTSZ, septum, coi 40.4 1.3E+02 0.0045 23.5 10.1 40 175-214 9-48 (81)
36 4etp_A Kinesin-like protein KA 39.3 65 0.0022 31.2 7.1 22 178-199 9-30 (403)
37 2yy0_A C-MYC-binding protein; 38.9 48 0.0016 23.7 4.6 29 188-216 21-49 (53)
38 2eqb_B RAB guanine nucleotide 38.4 1.5E+02 0.0053 23.8 8.4 50 174-223 7-59 (97)
39 3cvf_A Homer-3, homer protein 38.3 74 0.0025 24.7 5.9 38 177-214 4-41 (79)
40 1ytz_T Troponin T; muscle, THI 38.1 89 0.0031 25.4 6.7 47 170-216 40-86 (107)
41 2wt7_B Transcription factor MA 37.9 1E+02 0.0035 24.4 6.9 39 179-217 48-86 (90)
42 2zvf_A Alanyl-tRNA synthetase; 37.6 41 0.0014 27.9 4.8 32 174-205 27-58 (171)
43 1uix_A RHO-associated kinase; 37.4 1.4E+02 0.0047 22.9 10.1 58 175-233 7-64 (71)
44 1gk6_A Vimentin; intermediate 37.3 99 0.0034 22.2 6.2 43 178-224 6-48 (59)
45 1kd8_B GABH BLL, GCN4 acid bas 37.2 86 0.0029 21.2 5.3 27 175-201 4-30 (36)
46 1ci6_A Transcription factor AT 36.6 1.1E+02 0.0037 22.3 6.4 34 180-213 24-57 (63)
47 3mov_A Lamin-B1; LMNB1, B-type 36.5 1.6E+02 0.0053 23.2 8.9 10 211-220 72-81 (95)
48 2zqm_A Prefoldin beta subunit 35.6 1.3E+02 0.0045 23.2 7.2 43 173-218 67-109 (117)
49 3ljm_A Coil Ser L9C; de novo d 35.5 65 0.0022 20.7 4.3 24 175-198 4-27 (31)
50 1u2m_A Histone-like protein HL 35.3 16 0.00056 29.6 1.9 49 197-245 64-112 (143)
51 3oja_B Anopheles plasmodium-re 34.8 3.2E+02 0.011 26.4 12.5 22 270-291 561-582 (597)
52 1t3j_A Mitofusin 1; coiled coi 34.5 94 0.0032 25.0 6.2 47 168-214 43-92 (96)
53 1l8d_A DNA double-strand break 33.4 1.4E+02 0.0048 23.1 7.0 45 173-217 58-102 (112)
54 1gmj_A ATPase inhibitor; coile 33.4 1.5E+02 0.0051 23.4 7.0 17 199-215 57-73 (84)
55 3htk_A Structural maintenance 33.4 1.2E+02 0.0042 21.1 7.9 46 176-221 9-54 (60)
56 1d7m_A Cortexillin I; coiled-c 33.0 1.6E+02 0.0054 23.8 7.2 46 170-215 16-61 (101)
57 3he4_B Synzip5; heterodimeric 32.6 1.2E+02 0.0042 20.9 5.7 34 173-210 4-37 (46)
58 3mq9_A Bone marrow stromal ant 32.4 74 0.0025 30.2 6.3 36 175-210 400-435 (471)
59 3a7o_A Autophagy protein 16; c 32.2 1.6E+02 0.0055 22.7 6.8 36 173-208 12-47 (75)
60 1wt6_A Myotonin-protein kinase 32.0 1.8E+02 0.0062 22.8 7.2 26 193-218 45-70 (81)
61 2wt7_A Proto-oncogene protein 32.0 1.3E+02 0.0045 21.6 6.2 33 181-213 25-57 (63)
62 2x3v_A Syndapin I, protein kin 31.1 3E+02 0.01 24.8 16.3 45 181-225 185-229 (337)
63 3ilw_A DNA gyrase subunit A; D 31.0 1.7E+02 0.006 29.3 8.8 67 210-288 341-407 (470)
64 1x8y_A Lamin A/C; structural p 29.6 1.9E+02 0.0064 22.1 8.9 45 180-224 29-76 (86)
65 3u06_A Protein claret segregat 29.5 1.4E+02 0.0048 29.0 7.7 13 281-293 129-141 (412)
66 1fxk_A Prefoldin; archaeal pro 28.9 1.9E+02 0.0065 21.9 7.1 42 173-217 62-103 (107)
67 1ez3_A Syntaxin-1A; three heli 28.8 2.1E+02 0.007 22.3 12.4 66 173-240 6-74 (127)
68 3t98_B Nucleoporin NUP58/NUP45 28.7 1.7E+02 0.0057 23.2 6.7 50 170-219 42-91 (93)
69 2z5i_A TM, general control pro 28.6 1.5E+02 0.0052 21.0 5.8 20 188-207 14-33 (52)
70 2dfs_A Myosin-5A; myosin-V, in 28.5 3.9E+02 0.013 29.2 11.7 33 184-216 982-1014(1080)
71 3u1c_A Tropomyosin alpha-1 cha 28.4 1.9E+02 0.0065 22.7 7.1 41 177-217 28-68 (101)
72 3u06_A Protein claret segregat 28.1 1.8E+02 0.0061 28.3 8.2 32 185-216 9-40 (412)
73 1j1d_C Troponin I, TNI; THIN f 27.9 2.2E+02 0.0076 24.0 7.7 47 170-216 56-102 (133)
74 3kin_B Kinesin heavy chain; mo 27.8 1.1E+02 0.0037 24.8 5.6 33 172-204 82-114 (117)
75 2gzd_C RAB11 family-interactin 27.8 23 0.0008 29.1 1.6 35 170-204 44-78 (107)
76 3oja_A Leucine-rich immune mol 27.7 4E+02 0.014 25.2 11.5 48 201-249 418-468 (487)
77 2wuj_A Septum site-determining 26.7 57 0.0019 23.4 3.3 33 173-205 21-53 (57)
78 3v86_A De novo design helix; c 26.4 77 0.0026 19.9 3.4 23 176-198 4-26 (27)
79 2lw1_A ABC transporter ATP-bin 26.3 2E+02 0.0068 21.8 6.7 20 176-195 26-45 (89)
80 1ykh_B RNA polymerase II holoe 26.3 2E+02 0.0067 23.8 7.1 37 155-195 72-108 (132)
81 3viq_B Mating-type switching p 26.1 2.4E+02 0.0082 22.2 8.0 30 173-202 2-31 (85)
82 1t2k_D Cyclic-AMP-dependent tr 26.1 1E+02 0.0034 22.0 4.6 31 182-212 25-55 (61)
83 1g6u_A Domain swapped dimer; d 26.1 1.2E+02 0.004 21.2 4.7 23 181-203 22-44 (48)
84 1yke_B RNA polymerase II holoe 25.8 1.9E+02 0.0064 24.6 7.0 20 172-191 85-104 (151)
85 3m91_A Proteasome-associated A 25.7 1.8E+02 0.0063 20.7 7.1 37 181-217 11-47 (51)
86 3cve_A Homer protein homolog 1 25.5 2.2E+02 0.0077 21.6 8.1 29 185-213 6-34 (72)
87 3m48_A General control protein 25.5 98 0.0033 20.6 3.9 24 176-199 4-27 (33)
88 3fpp_A Macrolide-specific effl 24.9 1.3E+02 0.0044 27.0 6.2 42 172-213 62-103 (341)
89 2wq1_A General control protein 24.8 1.6E+02 0.0053 19.6 5.0 24 175-198 3-26 (33)
90 3twe_A Alpha4H; unknown functi 24.8 1E+02 0.0036 19.3 3.8 20 175-194 4-23 (27)
91 4hpq_C ATG17, KLTH0D15642P; au 24.8 5E+02 0.017 25.4 14.6 50 176-225 246-295 (413)
92 3mtu_E Head morphogenesis prot 24.8 1.4E+02 0.0048 23.2 5.4 12 191-202 42-53 (77)
93 1t2k_D Cyclic-AMP-dependent tr 24.6 1.9E+02 0.0065 20.5 6.7 25 175-199 32-56 (61)
94 1gk4_A Vimentin; intermediate 24.3 2.3E+02 0.008 21.4 8.9 12 211-222 61-72 (84)
95 3aco_A Pacsin2, protein kinase 24.2 4.1E+02 0.014 24.2 15.1 47 179-225 192-238 (350)
96 1jnm_A Proto-oncogene C-JUN; B 24.2 1E+02 0.0035 22.0 4.4 33 180-212 23-55 (62)
97 4dnd_A Syntaxin-10, SYN10; str 23.6 2.5E+02 0.0087 23.1 7.3 67 174-246 62-128 (130)
98 1t6f_A Geminin; coiled-coil, c 23.5 1.1E+02 0.0037 20.8 4.0 24 176-199 11-34 (37)
99 1p9i_A Cortexillin I/GCN4 hybr 23.3 1.2E+02 0.004 19.6 3.9 23 176-198 3-25 (31)
100 1gd2_E Transcription factor PA 23.1 2E+02 0.0069 21.6 5.9 35 176-210 33-67 (70)
101 2dfs_A Myosin-5A; myosin-V, in 23.1 2.5E+02 0.0085 30.7 8.9 59 191-249 975-1035(1080)
102 3c3f_A Alpha/beta peptide with 22.9 1.7E+02 0.006 19.5 5.0 25 175-199 4-28 (34)
103 3oja_A Leucine-rich immune mol 22.8 4.4E+02 0.015 24.9 9.8 36 179-214 414-449 (487)
104 3u59_A Tropomyosin beta chain; 22.2 2.8E+02 0.0095 21.5 7.1 41 177-217 56-96 (101)
105 3mud_A DNA repair protein XRCC 22.0 1.1E+02 0.0036 27.1 4.8 29 184-212 133-161 (175)
106 4dzo_A Mitotic spindle assembl 21.9 1.4E+02 0.0049 24.5 5.3 24 180-203 5-28 (123)
107 3ukx_C Bimax2 peptide; arm rep 21.9 34 0.0012 21.6 1.1 18 148-165 2-19 (28)
108 1j1e_C Troponin I, TNI; THIN f 21.7 3.2E+02 0.011 24.1 7.8 49 170-218 56-104 (180)
109 3u1c_A Tropomyosin alpha-1 cha 21.6 2.9E+02 0.01 21.6 8.6 33 185-217 22-54 (101)
110 3na7_A HP0958; flagellar bioge 21.6 4.2E+02 0.015 23.4 13.4 41 274-316 175-218 (256)
111 1kd8_A GABH AIV, GCN4 acid bas 21.6 1.8E+02 0.0063 19.6 4.8 24 176-199 5-28 (36)
112 2dgc_A Protein (GCN4); basic d 21.5 1.1E+02 0.0036 22.4 4.0 6 193-198 37-42 (63)
113 4dk0_A Putative MACA; alpha-ha 21.5 4.4E+02 0.015 23.6 9.6 42 172-213 63-104 (369)
114 1zxa_A CGMP-dependent protein 21.5 1.4E+02 0.0046 22.6 4.7 24 173-196 12-35 (67)
115 2oxj_A Hybrid alpha/beta pepti 21.2 1.9E+02 0.0066 19.3 5.0 24 175-198 4-27 (34)
116 3gp4_A Transcriptional regulat 21.1 3.4E+02 0.012 22.1 8.1 11 189-199 91-101 (142)
117 3vkg_A Dynein heavy chain, cyt 21.0 5.6E+02 0.019 31.8 11.9 49 170-218 1932-1980(3245)
118 2aze_B Transcription factor E2 21.0 1.8E+02 0.0061 23.3 5.6 30 177-206 11-40 (106)
119 2jo8_A Serine/threonine-protei 20.9 1.9E+02 0.0064 20.8 5.1 31 171-204 9-39 (51)
120 1dh3_A Transcription factor CR 20.8 83 0.0028 22.4 3.2 23 181-203 24-46 (55)
121 2eqb_B RAB guanine nucleotide 20.7 3.3E+02 0.011 21.8 7.9 35 177-211 3-37 (97)
122 2wuj_A Septum site-determining 20.7 1.2E+02 0.0043 21.5 4.2 36 167-202 22-57 (57)
123 3abh_A Pacsin2, protein kinase 20.5 4.5E+02 0.015 23.3 12.2 43 183-225 196-238 (312)
124 3f6n_A Virion-associated prote 20.5 2.4E+02 0.0083 23.7 6.4 22 222-243 40-61 (129)
125 1i84_S Smooth muscle myosin he 20.5 5.6E+02 0.019 27.9 11.0 40 177-216 862-901 (1184)
126 3cve_A Homer protein homolog 1 20.4 2.9E+02 0.0099 21.0 9.1 50 175-224 10-59 (72)
127 3vkg_A Dynein heavy chain, cyt 20.3 3.3E+02 0.011 33.7 9.8 13 281-293 2130-2142(3245)
128 2j69_A Bacterial dynamin-like 20.2 1.9E+02 0.0064 29.6 6.9 41 205-245 378-418 (695)
129 2xs1_A Programmed cell death 6 20.1 5.4E+02 0.018 26.4 10.3 74 171-250 604-677 (704)
130 2v71_A Nuclear distribution pr 20.0 4.6E+02 0.016 23.2 14.6 68 181-248 44-113 (189)
No 1
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=99.97 E-value=6.9e-31 Score=239.34 Aligned_cols=123 Identities=24% Similarity=0.337 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCC
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 258 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~ 258 (323)
..++.++++|+.+++++++++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+++..
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~------ 132 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDN------ 132 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc------
Confidence 34566777888999999999999999999999999999999999999999999999999999999999876531
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhcccc
Q 020610 259 SNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLI 319 (323)
Q Consensus 259 s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~ 319 (323)
..++.|++||+||+++|.++|+++||++|. ..|.+|||++|+||++.+-
T Consensus 133 --------~~~~~l~eGvemi~k~l~~~L~k~Gv~~I~----~~Ge~FDP~~HeAv~~v~~ 181 (213)
T 4ani_A 133 --------EQAKSILQGMEMVYRSLVDALKKEGVEAIE----AVGKPFDPYLHQAVMQAEA 181 (213)
T ss_dssp --------STHHHHHHHHHHHHHHHHHHHHHTTEECCC----CSSSCCCTTTEEEEEEECC
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCCHHHceeeeeecC
Confidence 246789999999999999999999999872 3588999999999998753
No 2
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=99.96 E-value=3.2e-30 Score=231.89 Aligned_cols=124 Identities=26% Similarity=0.308 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccC
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~ 256 (323)
+...+++++++++++++ +++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+....
T Consensus 40 ~~~~~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~---- 112 (197)
T 1dkg_A 40 RDEKVANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA---- 112 (197)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccc----
Confidence 44566667766666654 47899999999999999999999999999999999999999999999999886431
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccccc
Q 020610 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHLIL 320 (323)
Q Consensus 257 d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~~~ 320 (323)
++.++.|++||+||+++|.++|+++||++|. ..|.+|||++|+||++.+-.
T Consensus 113 ---------~~~~~~l~~Gv~~~~~~l~~~L~~~Gv~~i~----~~G~~FDP~~HeAv~~~~~~ 163 (197)
T 1dkg_A 113 ---------NPDMSAMVEDIELTLKSMLDVVRKFGVEVIA----ETNVPLDPNVHQAIAMVESD 163 (197)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHTTTTEEEEC----CCSSBCCTTSEEEEEEEECS
T ss_pred ---------cchHHHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCCHHHhheeeeecCC
Confidence 1235789999999999999999999999983 35889999999999987543
No 3
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=99.96 E-value=3e-31 Score=235.42 Aligned_cols=122 Identities=22% Similarity=0.229 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccC
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 256 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~ 256 (323)
+...+..++++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 17 ~~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~----- 91 (177)
T 3a6m_A 17 VGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEA----- 91 (177)
T ss_dssp THHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc-----
Confidence 344555566678888899999999999999999999999999999999999999999999999999999987653
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCCCCCccchhhhhccc
Q 020610 257 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKFYYCFPSHVSASLPPEHLYEPGCYGSMFNHL 318 (323)
Q Consensus 257 d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLek~GVe~I~g~k~dpge~FDP~~HEAV~q~~ 318 (323)
.++.|++||+||+++|.++|+++||++|. +.|++|||++|+||++.+
T Consensus 92 -----------~~~~l~~Gv~m~~~~l~~~L~k~Gv~~i~----~~Ge~FDP~~HeAv~~~~ 138 (177)
T 3a6m_A 92 -----------SPESIRQGVRAIRDGFFRILAGLGVEEVP----GEGEAFDPRYHEAVGLLP 138 (177)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHTTCEECC----CTTSBCCTTTEEEEEEEE
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHCCCEEeC----CCCCCCCHHHhhhhhccc
Confidence 15789999999999999999999999882 368899999999998865
No 4
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=88.72 E-value=5.7 Score=36.02 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEM----KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKAL 235 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEl----eElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdL 235 (323)
+.|...++++++++++++.++ +++.+--.|+..|.+.+++......-...--.+.+|=+.|
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl 126 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERAL 126 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456677777777777766665 4566666788889999888876666555545555554444
No 5
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=83.16 E-value=6.7 Score=27.81 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 223 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eea 223 (323)
+|+++..++.-++-++.++.|+.|||+-...++++-+...
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888889999999999999999988887766554
No 6
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=79.98 E-value=14 Score=28.70 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 226 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakkf 226 (323)
+++++..++.-++.|+.++.|++|+|+-...++++-+.+.-.+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788889999999999999999999988877666543
No 7
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.57 E-value=7.9 Score=27.26 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+|+.+++.++.+-+.+++..---+|-+.++..++.|+|+.++
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 344445555554444444444445556677788888888753
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.40 E-value=34 Score=30.52 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHhHHHHHhhhhh
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK--KFAIQNFAKALLDVADNLGRASSVVK 250 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeak--kfAiekfakdLLPVlDNLERALe~v~ 250 (323)
+.+.+..+..++..+..++..++++|.....+..+.-..+++++...+ .-....-+.+|=-.-|+|+|+.-+..
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~ 129 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 129 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444455555555554444444444444433322 22333445566667789998865543
No 9
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=74.97 E-value=30 Score=31.92 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhh
Q 020610 187 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 251 (323)
Q Consensus 187 eL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~e 251 (323)
+|..+++|+..+.-..+-+-|.+.|++|+.-||.-..+--|...+++.+.=+..-=.+-|+.++.
T Consensus 132 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ila~~gk~Ll~lldd 196 (234)
T 3plt_A 132 KIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLDD 196 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555555555556777999999999999999999999999998888777665555666654
No 10
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=71.27 E-value=14 Score=28.38 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeak 224 (323)
+..+++...+.+||.+|+=.+.-+++|++-+.+...+++-+++++..=.++.+
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999988888766555544
No 11
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.11 E-value=18 Score=30.43 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=32.7
Q ss_pred hccCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKER----EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 170 ~~ls~deL~~~lael----EeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+..++..|.+-+.+. ..++++++.||.+|+.++.-+.|+.|-+|+-.+
T Consensus 51 CNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 51 ANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344444444444333 344888888888888888888888888777654
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.82 E-value=20 Score=27.56 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
+..+|+..+.++.++|..+++.++++..++...-+++.+++.-.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888877777777777777777766666666666555443
No 13
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=66.68 E-value=53 Score=27.02 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHhHHHHHhhhhh
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK--FAIQNFAKALLDVADNLGRASSVVK 250 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk--fAiekfakdLLPVlDNLERALe~v~ 250 (323)
+...+|..+...|.-+++.|+.+|.....+--+..-.+++|+...+. -....-+++|=-.=|+|||+--+..
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~ 76 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 55667778888889999999999999999988888888888877654 3455677788888899999976554
No 14
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=65.96 E-value=13 Score=26.04 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=29.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFA 207 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~A 207 (323)
++.++|...+.....+++..++++.+++.++.-+.+
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999989999999999988887765543
No 15
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=64.63 E-value=27 Score=29.12 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhh
Q 020610 198 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 247 (323)
Q Consensus 198 lkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe 247 (323)
+++.|....++++++++-+++++...- -|||||+++-.
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~qe------------kiIdnFE~ik~ 106 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKIQA 106 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 566677777777777777766665544 57999997643
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.37 E-value=8.6 Score=27.68 Aligned_cols=32 Identities=28% Similarity=0.160 Sum_probs=23.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 202 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleElkDkl 202 (323)
....+.|..++++|+.++..|.+++++++.++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888887777665
No 17
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=62.25 E-value=55 Score=26.35 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 210 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfE 210 (323)
..+.|...+...++.|...+.++.+|+....+..++.+
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E 40 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 40 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556566666666666666666666555555444443
No 18
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.49 E-value=95 Score=25.65 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 210 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfE 210 (323)
-.++|...+...++.|.+...++.+++..+.+..++.|
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE 62 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666655555444443
No 19
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=53.46 E-value=26 Score=29.33 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 198 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 198 lkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
+++.|.-+...|.++++-+++++.+.. .|||||+..
T Consensus 69 yK~eY~~L~KkYk~~~~~Ld~eI~~qe------------~iI~nFe~I 104 (119)
T 2avr_X 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 678888888889999888888877655 468888843
No 20
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=53.30 E-value=72 Score=24.25 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSF---AEMENVKDRTIREAENSK 224 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~---AEfENyRKRteRE~Eeak 224 (323)
.+.....|..++.++.+++....+.. .+.=|+|-+++.|+.-.+
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555444444333 444577777777776555
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.74 E-value=76 Score=26.61 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE 219 (323)
...+..++.+++.+.+++..++.++..+.-..+++++-..+-
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777776666666554433
No 22
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.29 E-value=41 Score=28.21 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
.+++++++.+|+.|.+++.+...++.|+.++.+-+.-|+..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 34588888899999999999888899999888877777643
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.78 E-value=84 Score=26.31 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
+.|...++++..++..++.++..++.++.-+..+.+-++++...
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555544444433
No 24
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=49.92 E-value=1.1e+02 Score=27.55 Aligned_cols=63 Identities=30% Similarity=0.301 Sum_probs=36.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 239 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVl 239 (323)
++-...|..++..|.++|..+..+++.++.++.-+.++..-+.-+..++.+.+ .+++||+..+
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i------~i~~DL~e~L 81 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS------EVIKDLYEYL 81 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh------hHHHHHHHHc
Confidence 34445566666667777777777777777777666666644444444444333 3555555544
No 25
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=48.89 E-value=42 Score=26.08 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=27.9
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL 203 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkll 203 (323)
..++.+||.+.+-.++.+|...+..+.+|.|-+-
T Consensus 12 ~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID 45 (75)
T 3tso_C 12 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYID 45 (75)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999888888877766543
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.81 E-value=1.5e+02 Score=26.40 Aligned_cols=47 Identities=9% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 220 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~ 220 (323)
..+|.+.++.+...+..++.++.++...+.+...+.+-++.|..+..
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666666655555555554433
No 27
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=47.32 E-value=1.6e+02 Score=26.45 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHhHHHHHhhhhhhhcccCCC
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQ---NFAKALLDVADNLGRASSVVKENFLKIDP 258 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAie---kfakdLLPVlDNLERALe~v~ee~~~~d~ 258 (323)
.++.+++..+..++-++-|+=..+...+-+..+-|..|++++.+.|.. .+++..+.+++.++.........
T Consensus 72 ~~i~~~~~~l~~~ll~l~d~D~~aF~~~~~A~k~TeEEiq~al~~A~~VPl~ia~~~~~~l~l~~~la~~GN~~------ 145 (214)
T 1o5h_A 72 ERIVEAMEEARLKLFDLAKKDMEAFEKVMKAYKSSEGELQNALKEAASVPMDVIRVMKDLAHELEKLAEFGNKN------ 145 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCHH------
Confidence 333333444444444444444444444444333556668888888877 67777777777777777665431
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHHHHHH
Q 020610 259 SNDTAGAVPLLKSLLEGVEMTEKQLGEVK 287 (323)
Q Consensus 259 s~d~~~~~e~lksL~eGVeMI~KqL~kVL 287 (323)
.+.++--|..+.+--+...+
T Consensus 146 ---------aiSD~gvaa~l~~aAi~gA~ 165 (214)
T 1o5h_A 146 ---------LASDTLNAADLCHAVFQVEK 165 (214)
T ss_dssp ---------GHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHhHHHHHHHHHHHHHHHHH
Confidence 34455566666555554444
No 28
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.54 E-value=69 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 188 LMAKNEEMKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 188 L~~leeEleElkDkllRa~AEfENyR 213 (323)
+...+.++.+++-.+.++.+|++++|
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444444444443
No 29
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=45.18 E-value=87 Score=25.43 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=39.7
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
+.++.++|...+.++=+.|..++++-=++..++.+.--|+.-++.|.
T Consensus 40 d~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 40 DHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRI 86 (106)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Confidence 55788999999999999999999888888888888877887777764
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.83 E-value=2.1e+02 Score=29.54 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=12.3
Q ss_pred HHhhHHhHHHHHhhhhhh
Q 020610 234 ALLDVADNLGRASSVVKE 251 (323)
Q Consensus 234 dLLPVlDNLERALe~v~e 251 (323)
.+=.|.++|+|=+..++.
T Consensus 107 tynE~S~ELRRrIqyLKe 124 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKR 124 (562)
T ss_dssp HHHHTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444566778887777765
No 31
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.83 E-value=76 Score=30.71 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=8.5
Q ss_pred HHHHHHHHhCCCc
Q 020610 281 KQLGEVKFYYCFP 293 (323)
Q Consensus 281 KqL~kVLek~GVe 293 (323)
..+..+|..+.+.
T Consensus 131 ~lv~~~l~G~N~t 143 (403)
T 4etp_A 131 QLVQSSLDGYNVA 143 (403)
T ss_dssp HHHHHHHTTCCEE
T ss_pred HHHHHHhCCcceE
Confidence 4566777766665
No 32
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.11 E-value=38 Score=25.66 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 020610 188 LMAKNEEMKQMQD 200 (323)
Q Consensus 188 L~~leeEleElkD 200 (323)
|..|+.++.++..
T Consensus 31 i~~LE~~v~~le~ 43 (70)
T 1gd2_E 31 LKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 33
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=43.04 E-value=14 Score=32.32 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 197 QMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKA 234 (323)
Q Consensus 197 ElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakd 234 (323)
++.+--.|+..|.+++++......-...--.+.+|=+.
T Consensus 48 e~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerA 85 (177)
T 3a6m_A 48 DFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRA 85 (177)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444567777777777776665555544444444443
No 34
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.28 E-value=57 Score=25.05 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkllRa~AEfENyR 213 (323)
++..+++.|+.+++++.+..+.+..++.+++.||
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555555555553
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.39 E-value=1.3e+02 Score=23.49 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRK 214 (323)
+.|...|...-+.+..++-++++++.+...+..+.+.++.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466666666666777777888888887777777776554
No 36
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.33 E-value=65 Score=31.19 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQ 199 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElk 199 (323)
..+++.+++++.++++++++++
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTE 30 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 37
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.94 E-value=48 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 188 LMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 188 L~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
++.|+.|+++++.++..+.+..+-+++|+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555443
No 38
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.44 E-value=1.5e+02 Score=23.79 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRS---FAEMENVKDRTIREAENS 223 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa---~AEfENyRKRteRE~Eea 223 (323)
.+.+...+..++.++...+.++..|...+.+. ..+.|--+.++..|+++.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665555544432 233344444455554443
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=38.26 E-value=74 Score=24.74 Aligned_cols=38 Identities=5% Similarity=0.104 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRK 214 (323)
|....+++.++|++++.+..+|.+++..+..+++.-+-
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44455555666666777777777777777666666543
No 40
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=38.07 E-value=89 Score=25.39 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=38.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
+.++.++|...+.++=+.|..++++-=++..++.+.--|+.-++.|.
T Consensus 40 d~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV 86 (107)
T 1ytz_T 40 DHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRI 86 (107)
T ss_dssp SSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 45678889999999999999999888888888888777777777664
No 41
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.93 E-value=1e+02 Score=24.42 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
.....|+.+...+..+++.+.....+...|.+-||.+.+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777788888877764
No 42
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=37.58 E-value=41 Score=27.85 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRS 205 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa 205 (323)
.+++...++.+.+++.+++++++.++.++...
T Consensus 27 ~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 27 PAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777666553
No 43
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=37.45 E-value=1.4e+02 Score=22.88 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAK 233 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfak 233 (323)
+.+..+.+++-..+...++++..+++.-.....-...|.+.+..|+ -.+.-|+-++++
T Consensus 7 ~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~-~LK~QAVNKLAE 64 (71)
T 1uix_A 7 ANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER-TLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3445555566666666666666655555554455556777777666 456666666654
No 44
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=37.31 E-value=99 Score=22.21 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 178 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 178 ~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeak 224 (323)
...+..++++|..++.+++.. ++-+.+.=|+|-+++.|+.-.+
T Consensus 6 q~~i~~le~el~~~r~e~~~q----~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARL----KKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444333222 2333444566777776665544
No 45
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=37.16 E-value=86 Score=21.20 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDK 201 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDk 201 (323)
.+|++.+++|-.+...|+.++..++..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555555555555555555544443
No 46
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.58 E-value=1.1e+02 Score=22.26 Aligned_cols=34 Identities=6% Similarity=0.005 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkllRa~AEfENyR 213 (323)
...+++.++..++.+..+|..++..+..|...+|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444
No 47
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.47 E-value=1.6e+02 Score=23.25 Aligned_cols=10 Identities=30% Similarity=0.009 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 020610 211 NVKDRTIREA 220 (323)
Q Consensus 211 NyRKRteRE~ 220 (323)
|+|-+++-|+
T Consensus 72 nvKl~Le~EI 81 (95)
T 3mov_A 72 DVKLALDMEI 81 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 48
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.65 E-value=1.3e+02 Score=23.16 Aligned_cols=43 Identities=7% Similarity=0.132 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
+.++.... ++..++.++.+++.+..++......+..++..+..
T Consensus 67 ~~~ea~~~---L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAE---LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333 34445555677777777777777777777666543
No 49
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=35.51 E-value=65 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQM 198 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleEl 198 (323)
+.|++..+.++.+|..++++++-+
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888877654
No 50
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=35.29 E-value=16 Score=29.65 Aligned_cols=49 Identities=2% Similarity=0.078 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 197 QMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 197 ElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
.....+.....+|..+++..+++......-....+...+-+++..+-..
T Consensus 64 ~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak~ 112 (143)
T 1u2m_A 64 KLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666778888888888888877777777766666666665554
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.80 E-value=3.2e+02 Score=26.38 Aligned_cols=22 Identities=5% Similarity=0.095 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhCC
Q 020610 270 KSLLEGVEMTEKQLGEVKFYYC 291 (323)
Q Consensus 270 ksL~eGVeMI~KqL~kVLek~G 291 (323)
..+.+-+.-+..++.+.+++..
T Consensus 561 ~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555555544
No 52
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.54 E-value=94 Score=25.01 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhhccCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 168 SEIELSRDDLVKLLKEREEL---LMAKNEEMKQMQDKVLRSFAEMENVKD 214 (323)
Q Consensus 168 se~~ls~deL~~~laelEee---L~~leeEleElkDkllRa~AEfENyRK 214 (323)
...+....+|+.+++.++.+ |+......+.|+++...+..|.++|.+
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 53
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.43 E-value=1.4e+02 Score=23.06 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+.......+...+.++..++.++.+++.++..+..+.+.++.+..
T Consensus 58 ~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 58 TDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555666666666666666665555555555555444
No 54
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.41 E-value=1.5e+02 Score=23.37 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020610 199 QDKVLRSFAEMENVKDR 215 (323)
Q Consensus 199 kDkllRa~AEfENyRKR 215 (323)
++.+.++...+++.+++
T Consensus 57 ~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 57 AKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 55
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.39 E-value=1.2e+02 Score=21.10 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 221 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~E 221 (323)
.+...+.+..+.....+.++..++.++.++.+++.+++..+.+-..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777788888888888888888888877765543
No 56
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=32.98 E-value=1.6e+02 Score=23.80 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=29.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 215 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKR 215 (323)
..+|.++|.++..+++..|..++.+.+.-..++.-+.|-++..=|-
T Consensus 16 EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~ 61 (101)
T 1d7m_A 16 EKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKN 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4457777777777777777777777666655555555555544333
No 57
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.56 E-value=1.2e+02 Score=20.93 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 210 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfE 210 (323)
++.+|..-++++++ -..+++.+++.+.-+.|+.+
T Consensus 4 tvkelknyiqelee----rnaelknlkehlkfakaele 37 (46)
T 3he4_B 4 TVKELKNYIQELEE----RNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HhHHHHhHHHHHHHHHHHHH
Confidence 34566666655543 34555667777766666654
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.44 E-value=74 Score=30.25 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 210 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfE 210 (323)
..|.+.|.+.+.-+..++++....+--+.-+++-++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 335566666666666666666555555544444444
No 59
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.15 E-value=1.6e+02 Score=22.70 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE 208 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AE 208 (323)
+.+.+.+.++.|+++|...+.++..+++.+.--..|
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd 47 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKN 47 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445566778888888888888887777666543333
No 60
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.99 E-value=1.8e+02 Score=22.80 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 193 EEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 193 eEleElkDkllRa~AEfENyRKRteR 218 (323)
.++.+...+..-+.+|+++++++++.
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555543
No 61
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.96 E-value=1.3e+02 Score=21.63 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyR 213 (323)
+.+|+.+...++.+...|...+..+..+...++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 62
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=31.06 E-value=3e+02 Score=24.84 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
++.++.++..+..++.+..+.|..+...+..++.....+.....+
T Consensus 185 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 229 (337)
T 2x3v_A 185 QKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFE 229 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555666677777778888888888887777777766655544
No 63
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=31.01 E-value=1.7e+02 Score=29.34 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhhhhcccCCCCCCCCCchhhHHhHHHHHHHHHHHHHHHHH
Q 020610 210 ENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVKF 288 (323)
Q Consensus 210 ENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ee~~~~d~s~d~~~~~e~lksL~eGVeMI~KqL~kVLe 288 (323)
+=|+||++-+..++.+.+ .+++.|+-++|+++..+..+..+ .+ ..++...|.+.+.++..|...+|+
T Consensus 341 ~~~~rR~~~~L~k~~~r~--hilegl~~a~~~iD~vI~iIr~s-------~~---~~~a~~~L~~~f~lse~Qa~aIl~ 407 (470)
T 3ilw_A 341 DVIVRRTTYRLRKANERA--HILRGLVKALDALDEVIALIRAS-------ET---VDIARAGLIELLDIDEIQAQAILD 407 (470)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTHHHHHHHHHHC-------SS---HHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhC-------CC---HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 347788888777777664 45778888889999998877652 11 124456778888888888888774
No 64
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.62 E-value=1.9e+02 Score=22.11 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVLRSFAE---MENVKDRTIREAENSK 224 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkllRa~AE---fENyRKRteRE~Eeak 224 (323)
.++.....|..++.++.+++....+...| .=|+|-+++-|+.-.+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33344444555555555555544444333 3366666766665544
No 65
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.46 E-value=1.4e+02 Score=29.02 Aligned_cols=13 Identities=8% Similarity=-0.171 Sum_probs=7.5
Q ss_pred HHHHHHHHhCCCc
Q 020610 281 KQLGEVKFYYCFP 293 (323)
Q Consensus 281 KqL~kVLek~GVe 293 (323)
..+..+|..+.+.
T Consensus 129 plv~~~l~G~n~t 141 (412)
T 3u06_A 129 PLIQSALDGYNIC 141 (412)
T ss_dssp HHHHHHHTTCCEE
T ss_pred HHHHHHHCCCceE
Confidence 4555666665554
No 66
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.87 E-value=1.9e+02 Score=21.90 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+.++.... ++..++.++.+++.+..++......++.++..+.
T Consensus 62 ~~~e~~~~---L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 62 AKDELTEE---LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333 3344555567777777777777777777766543
No 67
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.80 E-value=2.1e+02 Score=22.28 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE---MENVKDRTIREAENSKKFAIQNFAKALLDVAD 240 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa~AE---fENyRKRteRE~EeakkfAiekfakdLLPVlD 240 (323)
.+++.-..+.+....|..++..+.++.....+.++. .+.++++++.-..+..+.|. -++..|..++
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~--~ik~~Lk~l~ 74 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTAN--KVRSKLKSIE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 456777888888888888888888887777776652 34566676666666554432 3555555443
No 68
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=28.69 E-value=1.7e+02 Score=23.15 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=31.9
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 219 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE 219 (323)
..+++.+|..-+...-+-.-.|-.+++.+-+.+.+...+|-|+||+.-++
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~d 91 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGD 91 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566777666666555555555666666666666677777788776543
No 69
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.56 E-value=1.5e+02 Score=20.95 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020610 188 LMAKNEEMKQMQDKVLRSFA 207 (323)
Q Consensus 188 L~~leeEleElkDkllRa~A 207 (323)
+.++++++.++.+++....-
T Consensus 14 V~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44444555555544444333
No 70
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.51 E-value=3.9e+02 Score=29.17 Aligned_cols=33 Identities=9% Similarity=0.304 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
++.++..++++++++.+++.++..|.+.+..+.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555544443
No 71
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.41 E-value=1.9e+02 Score=22.70 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+...+...+.....++.++..|+.++.-+..|++.+..++.
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666677677666777776666554
No 72
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.14 E-value=1.8e+02 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
+++|.+++++++++..+..+..++.+-++..+
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 73
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=27.91 E-value=2.2e+02 Score=23.96 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=37.2
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
++++.++|...+.++=+.|..++++-=++..++.+.--|+.-++.|.
T Consensus 56 d~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV 102 (133)
T 1j1d_C 56 AGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKI 102 (133)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHH
Confidence 45678889999999888888888887788888877777777776663
No 74
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.77 E-value=1.1e+02 Score=24.80 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 204 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllR 204 (323)
.+.+++.+.+++..++++.++.+++.+..++.|
T Consensus 82 ~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 82 LTAEEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777766666666666666666555443
No 75
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=27.76 E-value=23 Score=29.14 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=10.7
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 204 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllR 204 (323)
..++.+||.+++.+++++|...+.++.+|.|-+-+
T Consensus 44 ~~lTrdELI~lllk~e~~l~~kd~~IrELEDYID~ 78 (107)
T 2gzd_C 44 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDN 78 (107)
T ss_dssp -------------------CCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999998888887777776655443
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.69 E-value=4e+02 Score=25.24 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHhhhh
Q 020610 201 KVLRSFAEMENVKDRTIREAENSKKFAIQNFAK---ALLDVADNLGRASSVV 249 (323)
Q Consensus 201 kllRa~AEfENyRKRteRE~EeakkfAiekfak---dLLPVlDNLERALe~v 249 (323)
++....++.++.|.|+.++.+... .-++.+.+ .+-|++++++.++.-+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 418 RYEEMYVEQQSVQNNAIRDWDMYQ-HKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhhh-hHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 333455556666655555544332 22333333 5666666666666543
No 77
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.69 E-value=57 Score=23.36 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRS 205 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkllRa 205 (323)
+.++...-+....+.++.+.+++.+|++++.++
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555554443
No 78
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.39 E-value=77 Score=19.86 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQM 198 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleEl 198 (323)
+|.+++-++..++..++.+++++
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 45566666666666666665554
No 79
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.31 E-value=2e+02 Score=21.82 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEM 195 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEl 195 (323)
.|...|+.++++++.++.++
T Consensus 26 ~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 80
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.25 E-value=2e+02 Score=23.78 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=18.6
Q ss_pred ccccccCCCCCchhhhccCHHHHHHHHHHHHHHHHHHHHHH
Q 020610 155 KQTAFSDSDSDSESEIELSRDDLVKLLKEREELLMAKNEEM 195 (323)
Q Consensus 155 ~~~~~~~~~~~~~se~~ls~deL~~~laelEeeL~~leeEl 195 (323)
.++.+.++=++ .+.++++-.+.+.+|++++....+++
T Consensus 72 qIe~LIdsLP~----~~~see~Q~~ri~~L~~E~~~~~~el 108 (132)
T 1ykh_B 72 QINKLIDSLPG----VDVSAEEQLRKIDMLQKKLVEVEDEK 108 (132)
T ss_dssp HHHHHHHHSTT----TTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555442 33455555555555555554444443
No 81
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.12 E-value=2.4e+02 Score=22.17 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMKQMQDKV 202 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEleElkDkl 202 (323)
..+.|...++.|++++..+++++.++..++
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777766665444
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.10 E-value=1e+02 Score=21.98 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 182 KEREELLMAKNEEMKQMQDKVLRSFAEMENV 212 (323)
Q Consensus 182 aelEeeL~~leeEleElkDkllRa~AEfENy 212 (323)
.+++.+...++.+..+|..++..+..+...+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333
No 83
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.09 E-value=1.2e+02 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVL 203 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkll 203 (323)
++.++.+|..+++.+.-++.++.
T Consensus 22 laaleselqalekklaalksklq 44 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777766654
No 84
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.80 E-value=1.9e+02 Score=24.60 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=8.8
Q ss_pred cCHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAK 191 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~l 191 (323)
.++++-.+.+.+|++++...
T Consensus 85 ~seeeQ~~ri~~Le~E~~~~ 104 (151)
T 1yke_B 85 VSAEEQLRKIDMLQKKLVEV 104 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 85
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.70 E-value=1.8e+02 Score=20.68 Aligned_cols=37 Identities=3% Similarity=0.094 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+.++..++..+.++...|.+-+.++..++..++..++
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555554443
No 86
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.52 E-value=2.2e+02 Score=21.64 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEfENyR 213 (323)
.++|++++.+..+|.+++..+..+++.-+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666555555544
No 87
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.45 E-value=98 Score=20.58 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQ 199 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElk 199 (323)
+|+..+++|-.+-..|+.|+..++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555555555555555554444
No 88
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.86 E-value=1.3e+02 Score=27.02 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyR 213 (323)
++..++...+..++..|..++.+++..+.++..+..+++.++
T Consensus 62 ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~ 103 (341)
T 3fpp_A 62 IDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQ 103 (341)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777766666666666555555555555444443
No 89
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=24.83 E-value=1.6e+02 Score=19.59 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQM 198 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleEl 198 (323)
.+|++.++++-.+...++.|+..+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345555555544444444444433
No 90
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.83 E-value=1e+02 Score=19.25 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEE 194 (323)
Q Consensus 175 deL~~~laelEeeL~~leeE 194 (323)
++|-++++.+++.|.++.++
T Consensus 4 delykeledlqerlrklrkk 23 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 91
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=24.80 E-value=5e+02 Score=25.44 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
||..-+.++.+-+.....-.+.++..+....+++..+..-+.+..+..++
T Consensus 246 EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~ 295 (413)
T 4hpq_C 246 DLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRK 295 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555555555666666666666666666666554
No 92
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=24.76 E-value=1.4e+02 Score=23.19 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 020610 191 KNEEMKQMQDKV 202 (323)
Q Consensus 191 leeEleElkDkl 202 (323)
.++.|.++.|++
T Consensus 42 ~EKTIDDLEDkL 53 (77)
T 3mtu_E 42 FVSEYNDLEEKV 53 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 93
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.56 E-value=1.9e+02 Score=20.48 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQ 199 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElk 199 (323)
+.|......|..++..|+.++..|+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 94
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.29 E-value=2.3e+02 Score=21.39 Aligned_cols=12 Identities=33% Similarity=0.075 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 020610 211 NVKDRTIREAEN 222 (323)
Q Consensus 211 NyRKRteRE~Ee 222 (323)
|+|-+++-|+.-
T Consensus 61 nvK~~Ld~EIat 72 (84)
T 1gk4_A 61 NVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHH
Confidence 444444444443
No 95
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=24.19 E-value=4.1e+02 Score=24.20 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
+.++.++.++.....++.+.++.|..+...+..+|.+...+.....+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 238 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777888888888888888888888877776655554
No 96
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.16 E-value=1e+02 Score=22.04 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 212 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkllRa~AEfENy 212 (323)
.+.+|+.++..++.+...|..++..+..+...+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544444433
No 97
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.65 E-value=2.5e+02 Score=23.11 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHh
Q 020610 174 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 246 (323)
Q Consensus 174 ~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERAL 246 (323)
.+++...-.+|+.-|..++.++++|..-+.-+.++-.-| .-...|+.+- ..|+.++-..+.+++..|
T Consensus 62 ~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~R-----r~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 62 REELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQER-----KVFVERMREAVQEMKDHM 128 (130)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 356667777777778888888888887777766655544 2334454443 345555555555555443
No 98
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.46 E-value=1.1e+02 Score=20.76 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQ 199 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElk 199 (323)
.|-+.+..+.++|+.|+++..++.
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355566666666666666665554
No 99
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=23.31 E-value=1.2e+02 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQM 198 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleEl 198 (323)
+|-.+++.++.+-+.++.+++++
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444443
No 100
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.13 E-value=2e+02 Score=21.58 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 210 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElkDkllRa~AEfE 210 (323)
+|+..+.+++.....+..+...|+..+..+..+..
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544
No 101
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.12 E-value=2.5e+02 Score=30.73 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHhHHHHHhhhh
Q 020610 191 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK--KFAIQNFAKALLDVADNLGRASSVV 249 (323)
Q Consensus 191 leeEleElkDkllRa~AEfENyRKRteRE~Eeak--kfAiekfakdLLPVlDNLERALe~v 249 (323)
+++++..++.++..+..+.+.+++..++...+.. +-..+.+-.+|=.-+.+|+......
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554443332222 1222333344445555555554443
No 102
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.93 E-value=1.7e+02 Score=19.46 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQ 199 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElk 199 (323)
.+|++.++++-.+...|+.|+..++
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455555555444444444444443
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.77 E-value=4.4e+02 Score=24.93 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 179 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 214 (323)
Q Consensus 179 ~~laelEeeL~~leeEleElkDkllRa~AEfENyRK 214 (323)
+.+...++..++++.+...++......+.+.+++++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 333333434444444444444444444444444444
No 104
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.16 E-value=2.8e+02 Score=21.53 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
+...+...++.|......+.........+-++..++-||++
T Consensus 56 lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 56 TEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 105
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.04 E-value=1.1e+02 Score=27.14 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 184 REELLMAKNEEMKQMQDKVLRSFAEMENV 212 (323)
Q Consensus 184 lEeeL~~leeEleElkDkllRa~AEfENy 212 (323)
-+..+..+++++..|.|++.+...++.++
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i 161 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNM 161 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333
No 106
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=21.93 E-value=1.4e+02 Score=24.51 Aligned_cols=24 Identities=4% Similarity=0.075 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 180 LLKEREELLMAKNEEMKQMQDKVL 203 (323)
Q Consensus 180 ~laelEeeL~~leeEleElkDkll 203 (323)
++++++++|+.+++....|++-+.
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~ 28 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQ 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455445444444444443333
No 107
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=21.88 E-value=34 Score=21.61 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=7.7
Q ss_pred hhhhhccccccccCCCCC
Q 020610 148 KRRRRVSKQTAFSDSDSD 165 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~ 165 (323)
.||||+++.++--+.|.|
T Consensus 2 srrrrrrkrkrewddddd 19 (28)
T 3ukx_C 2 SRRRRRRKRKREWDDDDD 19 (28)
T ss_dssp ----CCCCCCCCCCCSSS
T ss_pred chhHHHHHhhcccccCCC
Confidence 355666666665554444
No 108
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=21.69 E-value=3.2e+02 Score=24.14 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=41.3
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
+.++.++|...+.++=+.|..++++-=++..++.+.--|+.-++.|..-
T Consensus 56 d~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~D 104 (180)
T 1j1e_C 56 AGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFD 104 (180)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 4679999999999999999999999888888888888888888877543
No 109
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.64 E-value=2.9e+02 Score=21.58 Aligned_cols=33 Identities=3% Similarity=0.032 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 185 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 217 (323)
Q Consensus 185 EeeL~~leeEleElkDkllRa~AEfENyRKRte 217 (323)
.+....++.+++.+.++...+-.++.-+.+|++
T Consensus 22 ~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 22 LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445555556666666666677777777765
No 110
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.60 E-value=4.2e+02 Score=23.44 Aligned_cols=41 Identities=2% Similarity=-0.114 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcccccCCCCCC---CCCCccchhhhhc
Q 020610 274 EGVEMTEKQLGEVKFYYCFPSHVSASLPPE---HLYEPGCYGSMFN 316 (323)
Q Consensus 274 eGVeMI~KqL~kVLek~GVe~I~g~k~dpg---e~FDP~~HEAV~q 316 (323)
..+-..|..+.+.....||.++.+. -.+ -...|..+-.|..
T Consensus 175 ~~lL~~Yerir~~~~g~avv~v~~~--~C~GC~~~lppq~~~~i~~ 218 (256)
T 3na7_A 175 PKIYSFYERIRRWAKNTSIVTIKKQ--ACGGCFIRLNDKIYTEVLT 218 (256)
T ss_dssp HHHHHHHHHHHHHHGGGSEEECBTT--BCTTTCCBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEeeCC--ccCCCCeeeCHHHHHHHHC
Confidence 3444556666665677888887431 233 3457777766654
No 111
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.56 E-value=1.8e+02 Score=19.58 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 176 DLVKLLKEREELLMAKNEEMKQMQ 199 (323)
Q Consensus 176 eL~~~laelEeeL~~leeEleElk 199 (323)
+|+..++++..+-..|+.|+..++
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555444444444444333
No 112
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.55 E-value=1.1e+02 Score=22.41 Aligned_cols=6 Identities=0% Similarity=0.623 Sum_probs=2.1
Q ss_pred HHHHHH
Q 020610 193 EEMKQM 198 (323)
Q Consensus 193 eEleEl 198 (323)
.+++.|
T Consensus 37 ~~v~~L 42 (63)
T 2dgc_A 37 DKVEEL 42 (63)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 113
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.53 E-value=4.4e+02 Score=23.64 Aligned_cols=42 Identities=7% Similarity=0.162 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 172 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 213 (323)
Q Consensus 172 ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyR 213 (323)
++..++...+...+.+|..++.++...+.++..+..+++.++
T Consensus 63 ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~ 104 (369)
T 4dk0_A 63 IDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLS 104 (369)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777766666666666555555544
No 114
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.50 E-value=1.4e+02 Score=22.59 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 173 SRDDLVKLLKEREELLMAKNEEMK 196 (323)
Q Consensus 173 s~deL~~~laelEeeL~~leeEle 196 (323)
.++++.+.+..+++.+.+|+..+.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~ 35 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLS 35 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 344455555555544544444433
No 115
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.17 E-value=1.9e+02 Score=19.28 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQM 198 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleEl 198 (323)
.+|+..+++|-.+-..|+.++..+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344555555444444444444333
No 116
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.07 E-value=3.4e+02 Score=22.10 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 020610 189 MAKNEEMKQMQ 199 (323)
Q Consensus 189 ~~leeEleElk 199 (323)
+.+++++++++
T Consensus 91 ~~l~~~i~~L~ 101 (142)
T 3gp4_A 91 IELKNRIDVMQ 101 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.00 E-value=5.6e+02 Score=31.78 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=31.9
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 170 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 218 (323)
Q Consensus 170 ~~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteR 218 (323)
....+++|.+++++++.+|++..++.+++-.++....++.+--|..+++
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~ 1980 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARE 1980 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777766666666665555544433
No 118
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.96 E-value=1.8e+02 Score=23.31 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSF 206 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~ 206 (323)
|+.+++.|+++-..|++.+..++..+..+.
T Consensus 11 Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 11 LTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444333333
No 119
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.92 E-value=1.9e+02 Score=20.85 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=19.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 204 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleElkDkllR 204 (323)
.++.+||...++-+..+. +.|+.++..+|.+
T Consensus 9 ~ls~eEL~~rl~~Ld~~M---e~Ei~elr~RY~~ 39 (51)
T 2jo8_A 9 SWTVEDLQKRLLALDPMM---EQEIEEIRQKYQS 39 (51)
T ss_dssp GSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHccHHH---HHHHHHHHHHHHH
Confidence 467888888777665433 4555555555543
No 120
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.82 E-value=83 Score=22.39 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020610 181 LKEREELLMAKNEEMKQMQDKVL 203 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkll 203 (323)
+.+|+.++..|+.+...|..++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 121
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.73 E-value=3.3e+02 Score=21.85 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN 211 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfEN 211 (323)
|.+.++.+.++|..++.++..+...+.++.+++.-
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34567788888999999999988888888777653
No 122
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.72 E-value=1.2e+02 Score=21.52 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=26.2
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 167 ESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 202 (323)
Q Consensus 167 ~se~~ls~deL~~~laelEeeL~~leeEleElkDkl 202 (323)
..+.+.-.+++...++.+..+...|+++++.++.++
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566667778888889999999999999998887653
No 123
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=20.52 E-value=4.5e+02 Score=23.32 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 183 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 225 (323)
Q Consensus 183 elEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk 225 (323)
.++.++.....++.+.++.|..+...+..+|.+...+.....+
T Consensus 196 K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 238 (312)
T 3abh_A 196 KLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238 (312)
T ss_dssp GGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344455556666667777777777777777776666555444
No 124
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=20.46 E-value=2.4e+02 Score=23.74 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhHHhHHH
Q 020610 222 NSKKFAIQNFAKALLDVADNLG 243 (323)
Q Consensus 222 eakkfAiekfakdLLPVlDNLE 243 (323)
+..+-...++++||-..+|..+
T Consensus 40 ~~lEsiAAKIIkDisdkId~Ce 61 (129)
T 3f6n_A 40 ESLETVAAKIVNDLTKLINDCP 61 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhHHHHHHHHHHHHHHHHhcCc
Confidence 4555566788888888888755
No 125
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.45 E-value=5.6e+02 Score=27.91 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 177 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 216 (323)
Q Consensus 177 L~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRt 216 (323)
+...++++++.|..+++++.++..++..+..+.+.++...
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544444444433
No 126
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.41 E-value=2.9e+02 Score=21.02 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020610 175 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 224 (323)
Q Consensus 175 deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeak 224 (323)
.+++..-..+++.+..++..+++-+.+--+..++..++-..+.=.+.+..
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445555566666666666666666666666666666655544444433
No 127
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.26 E-value=3.3e+02 Score=33.69 Aligned_cols=13 Identities=0% Similarity=-0.404 Sum_probs=7.7
Q ss_pred HHHHHHHHhCCCc
Q 020610 281 KQLGEVKFYYCFP 293 (323)
Q Consensus 281 KqL~kVLek~GVe 293 (323)
+.....|.+.||.
T Consensus 2130 ~~W~~~l~~~~Ip 2142 (3245)
T 3vkg_A 2130 RKWMIRLDSVGIK 2142 (3245)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCC
Confidence 4555666666664
No 128
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.23 E-value=1.9e+02 Score=29.64 Aligned_cols=41 Identities=7% Similarity=0.188 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Q 020610 205 SFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 245 (323)
Q Consensus 205 a~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERA 245 (323)
+....+.++.++.+-.++........+-.-+.-+.|.|+..
T Consensus 378 l~~~~~~~~~~l~~~~~~~~~~v~~~l~~~i~~l~~~f~~~ 418 (695)
T 2j69_A 378 LTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFEND 418 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33333344444444444333333333333333333444433
No 129
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=20.06 E-value=5.4e+02 Score=26.36 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhh
Q 020610 171 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 250 (323)
Q Consensus 171 ~ls~deL~~~laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~EeakkfAiekfakdLLPVlDNLERALe~v~ 250 (323)
.+..++|.+.+..+...|...-.+-+.+-.++..+.++|...|+-. ......+.++..|--.+|.+.-....+.
T Consensus 604 ~lf~~eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~------~~~~~re~~~~~l~~ay~~y~el~~~l~ 677 (704)
T 2xs1_A 604 ALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSN------NEANLREEVLKNLATAYDNFVELVANLK 677 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444455555555555554444444445555555666665554321 1112235555555555555554444443
No 130
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.05 E-value=4.6e+02 Score=23.21 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHhHHHHHhhh
Q 020610 181 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK--FAIQNFAKALLDVADNLGRASSV 248 (323)
Q Consensus 181 laelEeeL~~leeEleElkDkllRa~AEfENyRKRteRE~Eeakk--fAiekfakdLLPVlDNLERALe~ 248 (323)
-++++.+|..+++.+.+++.++.++.-|.+.+|.+.+.-..++.. ...+.=+..|-...+.|-.-+--
T Consensus 44 E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 44 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999999999999776665443 22334455566666666655433
Done!