Query 020611
Match_columns 323
No_of_seqs 163 out of 255
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03181 BURP: BURP domain; I 100.0 1.2E-91 2.6E-96 642.6 20.1 212 106-318 1-216 (216)
2 PF14020 DUF4236: Protein of u 78.5 3 6.5E-05 31.4 3.5 18 40-57 12-29 (55)
3 PF14020 DUF4236: Protein of u 76.7 3.7 8.1E-05 30.9 3.6 36 19-58 13-48 (55)
4 KOG0022 Alcohol dehydrogenase, 65.7 4.9 0.00011 40.5 2.7 30 257-292 30-59 (375)
5 KOG1641 Mitochondrial chaperon 40.9 18 0.00039 30.7 1.7 27 89-115 75-101 (104)
6 PF06787 UPF0254: Uncharacteri 33.7 17 0.00037 32.9 0.6 17 40-56 104-120 (160)
7 PF15641 Tox-MPTase5: Metallop 31.6 27 0.00058 29.3 1.3 40 3-44 15-54 (109)
8 smart00167 VPS9 Domain present 27.8 17 0.00036 30.9 -0.5 35 174-208 75-109 (117)
9 COG1062 AdhC Zn-dependent alco 26.4 78 0.0017 32.3 3.8 29 258-286 16-48 (366)
10 PF11323 DUF3125: Protein of u 25.8 41 0.00089 25.1 1.3 32 283-317 19-50 (50)
11 COG1064 AdhP Zn-dependent alco 21.6 45 0.00097 33.5 1.1 29 271-300 34-62 (339)
12 PF10950 DUF2775: Protein of u 21.3 39 0.00083 28.7 0.5 12 1-12 16-27 (108)
No 1
>PF03181 BURP: BURP domain; InterPro: IPR004873 The BURP domain is a ~230-residue module, which has been named for the four members of the group initially identified, BNM2, USP, RD22, and PG1beta. It is found in the C-terminal part of a number of plant cell wall proteins, which are defined not only by the BURP domain, but also by the overall similarity in their modular construction. The BURP domain proteins consists of either three or four modules: (i) an N-terminal hydrophobic domain - a presumptive transit peptide, joined to (ii) a short conserved segment or other short segment, (iii) an optional segment consisting of repeated units which is unique to each member, and (iv) the C-terminal BURP domain. Although the BURP domain proteins share primary structural features, their expression patterns and the conditions under which they are expressed differ. The presence of the conserved BURP domain in diverse plant proteins suggests an important and fundamental functional role for this domain []. It is possible that the BURP domain represents a general motif for localization of proteins within the cell wall matrix. The other structural domains associated with the BURP domain may specify other target sites for intermolecular interactions []. Some proteins known to contain a BURP domain are listed below [, , ]: Brassica protein BNM2, which is expressed during the induction of microspore embryogenesis. Field bean USPs, abundant non-storage seed proteins with unknown function. Soybean USP-like proteins ADR6 (or SALI5-4A), an auxin-repressible, aluminium-inducible protein and SALI3-2, a protein that is up-regulated by aluminium. Soybean seed coat BURP-domain protein 1 (SCB1). It might play a role in the differentiation of the seed coat parenchyma cells. Arabidopsis RD22 drought induced protein. Maize ZRP2, a protein of unknown function in cortex parenchyma. Tomato PG1beta, the beta-subunit of polygalacturonase isozyme 1 (PG1), which is expressed in ripening fruits. Cereal RAFTIN. It is essential specifically for the maturation phase of pollen development.
Probab=100.00 E-value=1.2e-91 Score=642.60 Aligned_cols=212 Identities=68% Similarity=1.147 Sum_probs=205.5
Q ss_pred cceeecCCCCCCceeeecccCCCC--CCcccchhhhcccCCCCCChhHHhhhCccCCCCHHHHHHHHhHHHccCCCCCCc
Q 020611 106 ALFFLEKDLHPGMKMNLHFTQTSN--GATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGE 183 (323)
Q Consensus 106 ~~FF~e~dL~pG~km~l~f~~~~~--~~~FLPR~vAdsIPFSs~kl~~iL~~FsI~~~S~~A~~m~~TL~~CE~p~i~GE 183 (323)
++||+|+||+||++|+|+|++..+ .++||||++||+||||+++|++||++|+|+++|+||++|++||++||.++++||
T Consensus 1 ~~fF~e~dL~~G~~m~l~f~~~~~~~~~~fLpr~~A~siPfss~~l~~iL~~Fsi~~~S~~A~~m~~Tl~~Ce~~~~~GE 80 (216)
T PF03181_consen 1 ALFFLEKDLHPGKKMPLYFPKSDNSAKRPFLPRQVADSIPFSSSKLPEILQMFSIPPGSPMAKAMKNTLEECESPPIKGE 80 (216)
T ss_pred CcccCHHHCCCCceeeecCCCCCCCcccccCCHHHhccCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCc
Confidence 589999999999999999998754 679999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhhHHHHhhhhcCC-ceEEEeeeeccCCcceeeEEEeeeeeecC-CceeeeecccCCceeEeccccCceeEEE
Q 020611 184 QKYCATSLESMIDFSTSKLGK-SVQAISTEVKKGTKMQTYTIAAGVKQMAA-DKSVVCHKQNYPYAVFYCHATQTTRAYM 261 (323)
Q Consensus 184 ~K~CATSLESMvdFa~S~LG~-~v~a~ST~~~~~~~~q~YtV~~~Vk~i~g-~k~V~CH~~~yPYaVfYCH~~~~T~aY~ 261 (323)
+|+||||||||+||++|+||+ +++++||++....+.|+|+|. +|+++.+ +++|+||+|+|||+|||||.++.||+|+
T Consensus 81 ~k~CaTSLESMvdF~~s~LG~~~v~a~st~~~~~~~~~~y~V~-~v~~i~~~~~~V~CH~~~yPYaVyyCH~~~~t~~y~ 159 (216)
T PF03181_consen 81 TKYCATSLESMVDFAVSKLGTRNVRALSTEVPKSTPLQNYTVE-GVKKIGGGDKSVVCHKMPYPYAVYYCHSIPPTRVYM 159 (216)
T ss_pred CccCcCCHHHHHHHHHHhcCCCccEEEeccccCCCCCccEEEE-eeeeecCCCceEEEcccCCceeEEEeeecCceeEEE
Confidence 999999999999999999997 899999999777889999996 9999987 8999999999999999999999999999
Q ss_pred EeeecCCCCceeEEEeeeccCCCCCCCchhhhhhccCCCCcceeeeeeCCcEEEeeC
Q 020611 262 VPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 318 (323)
Q Consensus 262 V~L~g~dG~~v~AvAVCH~DTS~Wnp~H~aF~~L~vKPG~~pVCHflp~~~ivWvp~ 318 (323)
|+|+|+||++++|+||||+|||.|||+|+||++||+|||++||||||++|+|+||||
T Consensus 160 V~l~g~dg~~~~avavCH~DTS~W~p~h~aF~~L~vkPG~~~VCHf~~~~~ivWv~~ 216 (216)
T PF03181_consen 160 VPLVGEDGTKVEAVAVCHLDTSGWNPDHPAFQVLGVKPGTVPVCHFLPNDHIVWVPN 216 (216)
T ss_pred EEEeecCCceEEEEEEEecCCCCCCcchHHHHHhCCCCCCcceEEEeeCCeEEEccC
Confidence 999999999999999999999999999999999999999999999999999999997
No 2
>PF14020 DUF4236: Protein of unknown function (DUF4236)
Probab=78.47 E-value=3 Score=31.41 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=8.3
Q ss_pred CceeeecCcccccccCCC
Q 020611 40 GTHVNVGGKGVGVNTGKP 57 (323)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~ 57 (323)
|..+|+.|.|+++..|.+
T Consensus 12 gvrlN~Sk~G~s~S~G~~ 29 (55)
T PF14020_consen 12 GVRLNLSKSGVSVSVGPK 29 (55)
T ss_pred CeEEEEcCCceeEEeCCC
Confidence 344444444444444433
No 3
>PF14020 DUF4236: Protein of unknown function (DUF4236)
Probab=76.68 E-value=3.7 Score=30.90 Aligned_cols=36 Identities=33% Similarity=0.642 Sum_probs=18.5
Q ss_pred eeEeecCCceeecCCCCCCCCCceeeecCcccccccCCCC
Q 020611 19 TSVNVGKGGVNVDAGKGKPGGGTHVNVGGKGVGVNTGKPD 58 (323)
Q Consensus 19 ~~v~~~~~g~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 58 (323)
..+|+.|.|+.+..| .+|.++++++-|..+.++-||
T Consensus 13 vrlN~Sk~G~s~S~G----~~g~~~t~~~~G~~~t~~iPG 48 (55)
T PF14020_consen 13 VRLNLSKSGVSVSVG----PKGARITVGKRGRRTTVGIPG 48 (55)
T ss_pred eEEEEcCCceeEEeC----CCCcceEeCCCCcEEEEEcCC
Confidence 455666666655533 234555555555444444454
No 4
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.67 E-value=4.9 Score=40.51 Aligned_cols=30 Identities=37% Similarity=0.519 Sum_probs=23.0
Q ss_pred eeEEEEeeecCCCCceeEEEeeeccCCCCCCCchhh
Q 020611 257 TRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAF 292 (323)
Q Consensus 257 T~aY~V~L~g~dG~~v~AvAVCH~DTS~Wnp~H~aF 292 (323)
-++++|.+ ++.+.++||+|-..|+-+++.+
T Consensus 30 Pka~EVRI------KI~~t~vCHTD~~~~~g~~~~~ 59 (375)
T KOG0022|consen 30 PKAHEVRI------KILATGVCHTDAYVWSGKDPEG 59 (375)
T ss_pred CCCceEEE------EEEEEeeccccceeecCCCccc
Confidence 35666665 5889999999999999765443
No 5
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=40.86 E-value=18 Score=30.72 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=20.6
Q ss_pred cccccccccccccCCCccceeecCCCC
Q 020611 89 NYVYAANENQLHDDPNTALFFLEKDLH 115 (323)
Q Consensus 89 ~y~y~a~~~q~~~~~~~~~FF~e~dL~ 115 (323)
+-.|+.++-.+.++.+.-+||.|++|-
T Consensus 75 lpeygGt~V~l~~~~~~~~fr~e~~l~ 101 (104)
T KOG1641|consen 75 LPEYGGTKVKLGDEDEYHLFRDEDDLL 101 (104)
T ss_pred eeccCCcEEeccCCceeEEecchhhhh
Confidence 347888888887777878888888763
No 6
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function.
Probab=33.75 E-value=17 Score=32.95 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=11.2
Q ss_pred CceeeecCcccccccCC
Q 020611 40 GTHVNVGGKGVGVNTGK 56 (323)
Q Consensus 40 ~~~~~~~~~~~~~~~~~ 56 (323)
||+-|||+||+-|.+.+
T Consensus 104 gTTAGiGrGaI~I~t~~ 120 (160)
T PF06787_consen 104 GTTAGIGRGAICIVTDK 120 (160)
T ss_pred ecccccCCceEEEEeCC
Confidence 66777777777666643
No 7
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=31.64 E-value=27 Score=29.30 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=28.6
Q ss_pred hhhHhhcCCCcccCCceeEeecCCceeecCCCCCCCCCceee
Q 020611 3 KAVKDLLQPDVLEDKSTSVNVGKGGVNVDAGKGKPGGGTHVN 44 (323)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~v~~~~~g~~v~~~~~~~g~~~~~~ 44 (323)
++|+.+|..|+..-+-|...+=.-|++ .|..|||-||++|
T Consensus 15 ~~i~ai~~edf~~l~lt~~p~y~~~~~--sg~ak~~~gt~~g 54 (109)
T PF15641_consen 15 REIDAIISEDFPYLNLTHIPQYNYFMN--SGMAKPNEGTQFG 54 (109)
T ss_pred hHHHHHHHhhcccccceeccccChhhh--cccccCCcccchh
Confidence 688999998888888888887755543 4455666666554
No 8
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=27.85 E-value=17 Score=30.93 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.8
Q ss_pred HccCCCCCCccccccCchhhHHHHhhhhcCCceEE
Q 020611 174 ECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQA 208 (323)
Q Consensus 174 ~CE~p~i~GE~K~CATSLESMvdFa~S~LG~~v~a 208 (323)
.|...-..||.-||.|++|+-++|..+....++..
T Consensus 75 f~~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~~ 109 (117)
T smart00167 75 FLEPSLLTGEGGYYLTSLSAALALIKGLTEAHALP 109 (117)
T ss_pred HCCccccccHHHHHHHHHHHHHHHHHHCCHHhCCc
Confidence 44444579999999999999999998887665443
No 9
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=26.39 E-value=78 Score=32.28 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=19.2
Q ss_pred eEEEEeeecCC-C---CceeEEEeeeccCCCCC
Q 020611 258 RAYMVPLEGAD-G---TKAKAAAVCHTDTSAWN 286 (323)
Q Consensus 258 ~aY~V~L~g~d-G---~~v~AvAVCH~DTS~Wn 286 (323)
.+-+|.|.... | -|++|.+|||+|-+.-+
T Consensus 16 ~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~ 48 (366)
T COG1062 16 EIEEVDLDPPRAGEVLVRITATGVCHTDAHTLS 48 (366)
T ss_pred EEEEEecCCCCCCeEEEEEEEeeccccchhhhc
Confidence 45556665543 2 26899999999985444
No 10
>PF11323 DUF3125: Protein of unknown function (DUF3125); InterPro: IPR021472 This family of proteins with unknown function appears to be restricted to Staphylococcus.
Probab=25.82 E-value=41 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.514 Sum_probs=27.4
Q ss_pred CCCCCCchhhhhhccCCCCcceeeeeeCCcEEEee
Q 020611 283 SAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 317 (323)
Q Consensus 283 S~Wnp~H~aF~~L~vKPG~~pVCHflp~~~ivWvp 317 (323)
..|..+ |-+|+-.|-.+--|++-..-+++|+|
T Consensus 19 ~~~e~~---fS~Lga~~q~a~yckl~f~~~L~~~P 50 (50)
T PF11323_consen 19 RNWESN---FSMLGAHFQSANYCKLNFPRLLCWGP 50 (50)
T ss_pred eeeccc---chhhccccceeeeEEecceeEEEecC
Confidence 568765 88999888888889999999999987
No 11
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=21.61 E-value=45 Score=33.51 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=20.3
Q ss_pred ceeEEEeeeccCCCCCCCchhhhhhccCCC
Q 020611 271 KAKAAAVCHTDTSAWNPKHLAFQVLKVKPG 300 (323)
Q Consensus 271 ~v~AvAVCH~DTS~Wnp~H~aF~~L~vKPG 300 (323)
++++.+|||+|-..|.-+-+ ...|-+-||
T Consensus 34 ~v~~~GVChsDlH~~~G~~~-~~~~P~ipG 62 (339)
T COG1064 34 KVEACGVCHTDLHVAKGDWP-VPKLPLIPG 62 (339)
T ss_pred EEEEEeecchhhhhhcCCCC-CCCCCccCC
Confidence 68999999999999886432 223444454
No 12
>PF10950 DUF2775: Protein of unknown function (DUF2775); InterPro: IPR024489 This eukaryotic family includes a number of plant organ-specific proteins. While their function is unknown, their predicted amino acid sequence suggests that these proteins could be exported and glycosylated [].
Probab=21.32 E-value=39 Score=28.75 Aligned_cols=12 Identities=50% Similarity=0.927 Sum_probs=10.6
Q ss_pred CchhhHhhcCCC
Q 020611 1 MPKAVKDLLQPD 12 (323)
Q Consensus 1 ~p~~~~~~l~~~ 12 (323)
||+||+.||+-+
T Consensus 16 MPeaIqgLl~~~ 27 (108)
T PF10950_consen 16 MPEAIQGLLNQD 27 (108)
T ss_pred ChHHHHHHHHhc
Confidence 999999999853
Done!