Query 020611
Match_columns 323
No_of_seqs 163 out of 255
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 23.9 30 0.001 28.0 1.5 35 148-184 31-66 (118)
2 1edn_A Endothelin-1; signal po 12.0 29 0.00099 21.7 -0.9 6 248-253 12-17 (26)
3 2heq_A YORP protein; SH3-like, 11.5 38 0.0013 26.1 -0.7 38 73-116 31-68 (84)
4 1obb_A Maltase, alpha-glucosid 10.4 81 0.0028 31.4 1.1 42 271-317 167-208 (480)
5 3n2f_G Na+/K+ ATPase gamma sub 10.1 68 0.0023 20.8 0.2 8 86-93 1-8 (31)
6 1srb_A Sarafotoxins precursor; 9.8 32 0.0011 21.5 -1.3 6 248-253 12-17 (26)
7 2jo1_A Phospholemman; FXYD1, N 9.8 75 0.0026 24.3 0.4 7 86-92 7-13 (72)
8 3tjy_A Effector protein hopab3 9.7 1.6E+02 0.0056 23.3 2.4 35 142-176 37-77 (94)
9 3hgl_A Effector protein hopab2 9.6 1.8E+02 0.0062 22.7 2.6 35 142-176 39-79 (85)
10 2jp3_A FXYD domain-containing 9.0 90 0.0031 23.6 0.6 8 86-93 8-15 (67)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=23.92 E-value=30 Score=27.97 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=26.9
Q ss_pred ChhHHhhhCccCCCCHHHHHHHHhHH-HccCCCCCCcc
Q 020611 148 KLPEIFNQFSVKPGSVEAEIMQNTIK-ECEDPGIKGEQ 184 (323)
Q Consensus 148 kl~~iL~~FsI~~~S~~A~~m~~TL~-~CE~p~i~GE~ 184 (323)
.|.+||+.|-|+. +.|..+..||+ .||.-|.+-|-
T Consensus 31 sledilaqfeis~--~sayniqr~l~~ice~hpdecev 66 (118)
T 2vqc_A 31 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECEV 66 (118)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhhe
Confidence 4789999998864 46889999994 69987765443
No 2
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=12.05 E-value=29 Score=21.71 Aligned_cols=6 Identities=50% Similarity=1.658 Sum_probs=4.0
Q ss_pred eEeccc
Q 020611 248 VFYCHA 253 (323)
Q Consensus 248 VfYCH~ 253 (323)
|||||.
T Consensus 12 ~YfChl 17 (26)
T 1edn_A 12 VYFCHL 17 (26)
T ss_dssp TTTSTT
T ss_pred EEEEec
Confidence 677774
No 3
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=11.49 E-value=38 Score=26.12 Aligned_cols=38 Identities=29% Similarity=0.565 Sum_probs=21.9
Q ss_pred eecCCCcceeeecCCccccccccccccccCCCccceeecCCCCC
Q 020611 73 STGHKGKPVYVGVSPFNYVYAANENQLHDDPNTALFFLEKDLHP 116 (323)
Q Consensus 73 ~~~~~~~~~~v~~~p~~y~y~a~~~q~~~~~~~~~FF~e~dL~p 116 (323)
+.|+|||-|-. ++-.+|+|+-++ ..-.. -||-|.+|.|
T Consensus 31 hVGrkGkIie~-~hSa~YDYaVsd----etGdI-t~fKEhElnp 68 (84)
T 2heq_A 31 HVGRKGKIIEH-LHSATYDYAVSD----ETGDI-TYFKEHELTP 68 (84)
T ss_dssp CCSSEEEEEEE-CCCSSCSEEEEE----TTSCE-EEECGGGEEE
T ss_pred ccccccchhhh-hhhheeeeeeec----ccCce-eeeecccccc
Confidence 44556654432 255679997652 22222 4888888765
No 4
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=10.44 E-value=81 Score=31.37 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=33.0
Q ss_pred ceeEEEeeeccCCCCCCCchhhhhhccCCCCcceeeeeeCCcEEEee
Q 020611 271 KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 317 (323)
Q Consensus 271 ~v~AvAVCH~DTS~Wnp~H~aF~~L~vKPG~~pVCHflp~~~ivWvp 317 (323)
+.+.+++||.+-+ -.+.. +.|++.|-++ -.-++.-||+.|+.
T Consensus 167 ~~rviG~c~~~~~---~~~~l-~~lgv~~~~v-~~~v~GlNH~~w~~ 208 (480)
T 1obb_A 167 PIKAVGFCHGHYG---VMEIV-EKLGLEEEKV-DWQVAGVNHGIWLN 208 (480)
T ss_dssp CSEEEEECSGGGH---HHHHH-HHTTCCGGGE-EEEEEEETTEEEEE
T ss_pred CCcEEecCCCHHH---HHHHH-HHhCCCHHHc-eEEEEeecchhhhh
Confidence 4588999999886 35667 9999998764 34567889999984
No 5
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=10.10 E-value=68 Score=20.76 Aligned_cols=8 Identities=50% Similarity=1.099 Sum_probs=5.7
Q ss_pred CCcccccc
Q 020611 86 SPFNYVYA 93 (323)
Q Consensus 86 ~p~~y~y~ 93 (323)
+||.|+|.
T Consensus 1 dPF~yDy~ 8 (31)
T 3n2f_G 1 DPFYYDYE 8 (31)
T ss_dssp CCCCCCHH
T ss_pred CCCCCChH
Confidence 47888873
No 6
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=9.85 E-value=32 Score=21.52 Aligned_cols=6 Identities=33% Similarity=1.624 Sum_probs=3.6
Q ss_pred eEeccc
Q 020611 248 VFYCHA 253 (323)
Q Consensus 248 VfYCH~ 253 (323)
|||||.
T Consensus 12 ~YfChl 17 (26)
T 1srb_A 12 LYFCHQ 17 (26)
T ss_dssp HHHHSC
T ss_pred EEEEec
Confidence 566664
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=9.77 E-value=75 Score=24.29 Aligned_cols=7 Identities=57% Similarity=1.345 Sum_probs=5.8
Q ss_pred CCccccc
Q 020611 86 SPFNYVY 92 (323)
Q Consensus 86 ~p~~y~y 92 (323)
+||.|+|
T Consensus 7 dPF~YDY 13 (72)
T 2jo1_A 7 DPFTYDY 13 (72)
T ss_dssp SGGGCST
T ss_pred CCcccch
Confidence 7888888
No 8
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=9.74 E-value=1.6e+02 Score=23.33 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=25.3
Q ss_pred cCCCCCChhHHhhhC------ccCCCCHHHHHHHHhHHHcc
Q 020611 142 TPFSSDKLPEIFNQF------SVKPGSVEAEIMQNTIKECE 176 (323)
Q Consensus 142 IPFSs~kl~~iL~~F------sI~~~S~~A~~m~~TL~~CE 176 (323)
+-||-....-+|+.| +|..+|..|..++.+|+.-.
T Consensus 37 valsr~eq~Il~qHFPnM~~~gI~~~seLA~elR~aLrrav 77 (94)
T 3tjy_A 37 MILSRAEQNVFLQHFPDMLPCGIDRNSELAIALREALRRAD 77 (94)
T ss_dssp CCCCHHHHHHHHHHCTTHHHHCCCTTSHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCcccccccCCCccHHHHHHHHHHHHHH
Confidence 344444444556666 89999999999999998754
No 9
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=9.64 E-value=1.8e+02 Score=22.73 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=24.2
Q ss_pred cCCCCCChhHHhhhC------ccCCCCHHHHHHHHhHHHcc
Q 020611 142 TPFSSDKLPEIFNQF------SVKPGSVEAEIMQNTIKECE 176 (323)
Q Consensus 142 IPFSs~kl~~iL~~F------sI~~~S~~A~~m~~TL~~CE 176 (323)
+-||-....-+++.| +|..+|..|..++.+|+.-.
T Consensus 39 valsr~e~~il~qHFPnm~~~Gi~~~S~LA~~lR~alrr~v 79 (85)
T 3hgl_A 39 VAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAV 79 (85)
T ss_dssp CCCCHHHHHHHHHHCTTHHHHCCCTTCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHChhhhhccCCCCCHHHHHHHHHHHHHH
Confidence 334433334455555 89999999999999997643
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.96 E-value=90 Score=23.57 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=6.7
Q ss_pred CCcccccc
Q 020611 86 SPFNYVYA 93 (323)
Q Consensus 86 ~p~~y~y~ 93 (323)
+||.|+|-
T Consensus 8 dpF~YDY~ 15 (67)
T 2jp3_A 8 SPFYYDWE 15 (67)
T ss_dssp SGGGGGGH
T ss_pred CCcccchH
Confidence 79999993
Done!