Query 020611
Match_columns 323
No_of_seqs 163 out of 255
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 05:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020611.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020611hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 40.5 5.5 0.0004 28.0 1.6 34 148-183 22-56 (70)
2 d1piwa1 b.35.1.2 (A:1-152,A:32 29.8 9 0.00066 31.1 1.5 16 271-286 39-54 (192)
3 d1vj0a1 b.35.1.2 (A:2-155,A:33 17.2 8.5 0.00062 31.1 -1.2 19 271-289 35-53 (184)
4 d1rjwa1 b.35.1.2 (A:1-137,A:30 16.8 6.5 0.00047 30.5 -2.0 15 271-285 31-45 (171)
5 d1e3ja1 b.35.1.2 (A:4-142,A:31 14.5 47 0.0034 25.5 2.8 37 247-285 5-45 (178)
6 d1miwa1 a.173.1.1 (A:140-404) 12.4 60 0.0044 25.6 2.9 44 151-201 214-257 (265)
7 d1e3ia1 b.35.1.2 (A:1-167,A:34 12.2 21 0.0015 28.5 -0.1 19 271-289 39-57 (202)
8 d1llua1 b.35.1.2 (A:2-143,A:31 12.1 9.5 0.00069 29.7 -2.3 18 271-288 36-53 (175)
9 d1uufa1 b.35.1.2 (A:3-144,A:31 11.8 11 0.00081 30.0 -2.0 16 271-286 31-46 (179)
10 d2e9xc2 d.344.1.4 (C:1001-1087 10.3 48 0.0035 24.3 1.4 24 101-124 39-70 (87)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=40.51 E-value=5.5 Score=27.97 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=26.2
Q ss_pred ChhHHhhhCccCCCCHHHHHHHHhHH-HccCCCCCCc
Q 020611 148 KLPEIFNQFSVKPGSVEAEIMQNTIK-ECEDPGIKGE 183 (323)
Q Consensus 148 kl~~iL~~FsI~~~S~~A~~m~~TL~-~CE~p~i~GE 183 (323)
.|.+||++|-|+. +.|..++.||+ .||.-|.+-|
T Consensus 22 ~ledilaqfeis~--~~ayniqr~l~~ice~hpdece 56 (70)
T d2vqca1 22 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECE 56 (70)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhh
Confidence 4789999998864 46889999994 6997665444
No 2
>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.83 E-value=9 Score=31.05 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.0
Q ss_pred ceeEEEeeeccCCCCC
Q 020611 271 KAKAAAVCHTDTSAWN 286 (323)
Q Consensus 271 ~v~AvAVCH~DTS~Wn 286 (323)
+++|++|||+|...|.
T Consensus 39 kv~a~giC~sDl~~~~ 54 (192)
T d1piwa1 39 KIEACGVCGSDIHCAA 54 (192)
T ss_dssp EEEEEEECHHHHHHHT
T ss_pred EEeeeCCCcchHHHHc
Confidence 6899999999965554
No 3
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}
Probab=17.23 E-value=8.5 Score=31.11 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=15.6
Q ss_pred ceeEEEeeeccCCCCCCCc
Q 020611 271 KAKAAAVCHTDTSAWNPKH 289 (323)
Q Consensus 271 ~v~AvAVCH~DTS~Wnp~H 289 (323)
+++|.+|||+|...|.-..
T Consensus 35 kv~a~gIC~sD~~~~~G~~ 53 (184)
T d1vj0a1 35 EILSAGVCGSDVHMFRGED 53 (184)
T ss_dssp EEEEEEECHHHHHHHTTCC
T ss_pred EEEEECCCCCchhheeccC
Confidence 6899999999998776544
No 4
>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.75 E-value=6.5 Score=30.53 Aligned_cols=15 Identities=53% Similarity=0.753 Sum_probs=12.1
Q ss_pred ceeEEEeeeccCCCC
Q 020611 271 KAKAAAVCHTDTSAW 285 (323)
Q Consensus 271 ~v~AvAVCH~DTS~W 285 (323)
|++|.+|||+|...|
T Consensus 31 kv~a~gic~sD~~~~ 45 (171)
T d1rjwa1 31 RIKACGVCHTDLHAA 45 (171)
T ss_dssp EEEEEEECHHHHHHH
T ss_pred EEEEeeccccceeee
Confidence 689999999996443
No 5
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}
Probab=14.54 E-value=47 Score=25.52 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=21.1
Q ss_pred eeEeccccCceeEEEEeeec-CCCC---ceeEEEeeeccCCCC
Q 020611 247 AVFYCHATQTTRAYMVPLEG-ADGT---KAKAAAVCHTDTSAW 285 (323)
Q Consensus 247 aVfYCH~~~~T~aY~V~L~g-~dG~---~v~AvAVCH~DTS~W 285 (323)
||+|- ...-++=++++-. .++. +++|.+|||+|...|
T Consensus 5 AVl~g--~~~l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~ 45 (178)
T d1e3ja1 5 AVLYK--QNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYY 45 (178)
T ss_dssp EEEEE--TTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHH
T ss_pred EEEEc--CCcEEEEEeECCCCCCCEEEEEEEEEcccCchhhhh
Confidence 45553 2333444444432 2332 689999999997433
No 6
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.45 E-value=60 Score=25.59 Aligned_cols=44 Identities=11% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHhhhCccCCCCHHHHHHHHhHHHccCCCCCCccccccCchhhHHHHhhhh
Q 020611 151 EIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSK 201 (323)
Q Consensus 151 ~iL~~FsI~~~S~~A~~m~~TL~~CE~p~i~GE~K~CATSLESMvdFa~S~ 201 (323)
+|+++++++||....+.+++.. ..-+.|+ +.++-|++++|+.+.
T Consensus 214 dL~~~~g~~pGp~iG~il~~l~----~~~l~~~---~~n~ke~l~~~l~~~ 257 (265)
T d1miwa1 214 DVIEWVGKPAGPWVKEALDAIW----RAVVNGE---VENEKERIYAWLMER 257 (265)
T ss_dssp HHHHHHTCCSSHHHHHHHHHHH----HHHHTTS---SCSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHH----HHHHcCC---CCCCHHHHHHHHHHh
Confidence 6888899999876666555543 3334444 567899999998764
No 7
>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}
Probab=12.22 E-value=21 Score=28.46 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=15.6
Q ss_pred ceeEEEeeeccCCCCCCCc
Q 020611 271 KAKAAAVCHTDTSAWNPKH 289 (323)
Q Consensus 271 ~v~AvAVCH~DTS~Wnp~H 289 (323)
|++|.+|||+|...|+...
T Consensus 39 kv~a~gic~sD~~~~~G~~ 57 (202)
T d1e3ia1 39 QVIATCVCPTDINATDPKK 57 (202)
T ss_dssp EEEEEECCHHHHHTTCTTS
T ss_pred EEEEEEEeccccceeeeec
Confidence 6899999999997776543
No 8
>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.08 E-value=9.5 Score=29.74 Aligned_cols=18 Identities=44% Similarity=0.608 Sum_probs=14.3
Q ss_pred ceeEEEeeeccCCCCCCC
Q 020611 271 KAKAAAVCHTDTSAWNPK 288 (323)
Q Consensus 271 ~v~AvAVCH~DTS~Wnp~ 288 (323)
|++|.+|||.|...|+-.
T Consensus 36 kv~a~gic~~D~~~~~G~ 53 (175)
T d1llua1 36 KIEASGVCHTDLHAAEGD 53 (175)
T ss_dssp EEEEEECCHHHHHHHHTC
T ss_pred EEEEecCcccchhhhccC
Confidence 689999999998666543
No 9
>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}
Probab=11.80 E-value=11 Score=30.05 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.1
Q ss_pred ceeEEEeeeccCCCCC
Q 020611 271 KAKAAAVCHTDTSAWN 286 (323)
Q Consensus 271 ~v~AvAVCH~DTS~Wn 286 (323)
|+.|.+|||+|...|.
T Consensus 31 kv~a~gic~sDl~~~~ 46 (179)
T d1uufa1 31 EIAYCGVCHSDLHQVR 46 (179)
T ss_dssp EEEEEECCHHHHHHHH
T ss_pred EEEEECCCCCcceeee
Confidence 6899999999985443
No 10
>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.32 E-value=48 Score=24.26 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=16.3
Q ss_pred cCCCccceeec--------CCCCCCceeeecc
Q 020611 101 DDPNTALFFLE--------KDLHPGMKMNLHF 124 (323)
Q Consensus 101 ~~~~~~~FF~e--------~dL~pG~km~l~f 124 (323)
+-|.++.+|++ ++|.+|++|.|++
T Consensus 39 ~~p~LG~~~Ld~~~~~~~~~~i~~GskveLPL 70 (87)
T d2e9xc2 39 AMPRLGAFFLERSAGAETDNAVPQGSKLELPL 70 (87)
T ss_dssp CBTTCGGGC---------CCCBCTTCEEEEEH
T ss_pred cCcccchhhcCCCCCccccccCCCCCCccchH
Confidence 44556666765 2599999999876
Done!