BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020612
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
pdb|2GB5|B Chain B, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
Length = 269
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 9/151 (5%)
Query: 170 LAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI 229
+AG L E++ ++CG+CG + P + CS+ C++R YP++ P +I+ +
Sbjct: 91 FQLAGRGVQLAEFYRSHKYCGYCGHEXYPSKTEWAXLCSH--CRERYYPQIAPCIIVAI- 147
Query: 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289
R +D +LL++ +R + + +AGF+E GE+LE+AV RE EE+GI+V + Y TSQPW
Sbjct: 148 -RRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGIKVKNLRYVTSQPW 206
Query: 290 PVGPNSMPCQLMVGFYAYAKSFEINVDKEEL 320
P P L F A S +I +D +EL
Sbjct: 207 P-----FPQSLXTAFXAEYDSGDIVIDPKEL 232
>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From
Escherichia Coli K12 At 2.20 A Resolution
Length = 269
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 9/151 (5%)
Query: 170 LAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI 229
+AG L E++ ++CG+CG + P + CS+ C++R YP++ P +I+ +
Sbjct: 91 FQLAGRGVQLAEFYRSHKYCGYCGHEXYPSKTEWAXLCSH--CRERYYPQIAPCIIVAI- 147
Query: 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289
R +D +LL++ +R + + +AGF+E GE+LE+AV RE EE+GI+V + Y TSQPW
Sbjct: 148 -RRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGIKVKNLRYVTSQPW 206
Query: 290 PVGPNSMPCQLMVGFYAYAKSFEINVDKEEL 320
P P L F A S +I +D +EL
Sbjct: 207 P-----FPQSLXTAFXAEYDSGDIVIDPKEL 232
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
+ VI E +L WS AG IEPGE+ EEAV RE WEETG++V
Sbjct: 24 VAAVIKNEQGELLFQYPGG---EYWSLPAGAIEPGETPEEAVIREVWEETGLKV 74
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
K ++Y R PV I++VI ++ + +L Q R P W + G +E GE+ +A RE E
Sbjct: 2 KDKVYKR--PVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKE 59
Query: 273 ETGIEV 278
E I+V
Sbjct: 60 EVTIDV 65
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
+V+D +D+VLL ++ R W G +E GES+ E V+RE WEETGI V
Sbjct: 10 IVVD--HDQVLLLQKPR--RGWWVAPGGKMEAGESILETVKREYWEETGITV 57
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 224 VIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
V L+ + + + +LL R SR W G + P ESL+E V RE WEETGI
Sbjct: 11 VYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65
>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
Length = 209
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-------VPRMWSCIAGFIEPGESLEE 264
++ I+ R ++L D D V+L Q R P + +AG IE GES+E+
Sbjct: 49 VRREIFER-GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVED 107
Query: 265 AVRRETWEETGIEVGE---VVYHTSQPWPVGPNSMPCQLMVG 303
RRE EE G+ V V+ + P G S +MVG
Sbjct: 108 VARREAIEEAGLIVKRTKPVLSFLASP---GGTSERSSIMVG 146
>pdb|1VIQ|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 220
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-------VPRMWSCIAGFIEPGESLEE 264
++ I+ R ++L D D V+L Q R P + +AG IE GES+E+
Sbjct: 50 VRREIFER-GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVED 108
Query: 265 AVRRETWEETGIEVGE---VVYHTSQPWPVGPNSMPCQLMVG 303
RRE EE G+ V V+ + P G S +MVG
Sbjct: 109 VARREAIEEAGLIVKRTKPVLSFLASP---GGTSERSSIMVG 147
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 224 VIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGI 276
V++ V E D VLL ++++ R W AG +EPGE++ EA++RE EE G+
Sbjct: 22 VVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL 75
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 227 LVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGI------EVG 279
LV+ + RVLL + R F W+ G ++ GE++E+ RRE EE+G+ +VG
Sbjct: 29 LVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVG 88
Query: 280 EVVY 283
++V+
Sbjct: 89 QIVF 92
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 248 MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287
+WS G IEPGE EE RE WEETG++ GE++ + +
Sbjct: 26 VWSFPKGNIEPGEKPEETAVREVWEETGVK-GEILDYIGE 64
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
+V + + + +LL + F W G EPGESLEEA RE WEETG+
Sbjct: 8 VVFNAKREVLLLRDRMGF----WVFPKGHPEPGESLEEAAVREVWEETGV 53
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 227 LVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGI------EVG 279
LV+ + RVLL + R F W+ G ++ GE++E+ RRE EE+G+ +VG
Sbjct: 9 LVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVG 68
Query: 280 EVVY 283
++V+
Sbjct: 69 QIVF 72
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 225 IMLVIDRENDRV---LLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
++L ++E D++ L+ R+ W+ GF+ ES E++V RET EETG+ + +
Sbjct: 45 VLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQ 103
>pdb|3N77|A Chain A, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
pdb|3N77|B Chain B, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
Length = 144
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 246 PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289
P W+ G +EPGE +EEA+RRE EE G +++ PW
Sbjct: 33 PGQWALSGGGVEPGERIEEALRREIREELG---EQLILSDITPW 73
>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
pdb|3OGA|B Chain B, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
Length = 165
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 246 PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289
P W+ G +EPGE +EEA+RRE EE G +++ PW
Sbjct: 54 PGQWALSGGGVEPGERIEEALRREIREELG---EQLILSDITPW 94
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 187 RFCGHCGEKTIPK--EAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF 244
+FC CG + I + E L + C Y +P VI+ I ++VLL +++
Sbjct: 4 KFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQ--NPKVIVGCIPEWENKVLLCKRAIA 61
Query: 245 VPR-MWSCIAGFIEPGESLEEAVRRETWEETG--IEVGEV--VY---HTSQPWPVGPNSM 296
R W+ AGF E E+L + RET EE +E+ E+ VY H SQ + + +
Sbjct: 62 PYRGKWTLPAGFXENNETLVQGAARETLEEANARVEIRELYAVYSLPHISQVYXLFRAKL 121
Query: 297 PCQLMVGFYAYAKSFEINVDKEE 319
L + F+ +S E+ + E+
Sbjct: 122 ---LDLDFFPGIESLEVRLFGEQ 141
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
+V + + + +LL + F W G EPGESLEEA RE WE+TG+
Sbjct: 8 VVFNAKREVLLLRDRMGF----WVFPKGHPEPGESLEEAAVREVWEQTGV 53
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 204 LKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE 263
L+ C ++ + P+VD I ++ + +D + W+ G +EPGE
Sbjct: 3 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDGI----------HHWTPPKGHVEPGEDDL 52
Query: 264 EAVRRETWEETGIEVGEV 281
E RET EE GIE G++
Sbjct: 53 ETALRETQEEAGIEAGQL 70
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
P V + + + L+ ++ +W+ AG +E E+L EA RE WEETGI
Sbjct: 4 PHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ 63
Query: 282 VYHTSQPWPVGPNSMP 297
+ W + P+ P
Sbjct: 64 HFIRMHQW-IAPDKTP 78
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE-----VGEVV 282
V D ++L+ + + MW G EP E + + RE +EETGI+ V +
Sbjct: 33 VFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIR 92
Query: 283 YHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
+ P G + M + Y SF IN +EE
Sbjct: 93 QQHTNPGAFGKSDMYIICRLKPY----SFTINFCQEE 125
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 217 YPRVDPVVIMLVIDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETG 275
+ VD +VI+ ND +L+ R++ +W+ GF+E E++ +A+ RE +EET
Sbjct: 208 FVTVDALVIV------NDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETN 261
Query: 276 IEV 278
I +
Sbjct: 262 INL 264
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 204 LKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE 263
L+ C ++ + P+VD I ++ + +D + W+ G +EPGE
Sbjct: 8 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDGI----------HHWTPPKGHVEPGEDDL 57
Query: 264 EAVRRETWEETGIEVGEV 281
E R T EE GIE G++
Sbjct: 58 ETALRATQEEAGIEAGQL 75
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI----EV 278
V + VI++++ +L+ R + AG +EPGES+ +A RE EETG EV
Sbjct: 9 VTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV 68
Query: 279 GEVVYH 284
+YH
Sbjct: 69 LTGIYH 74
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 228 VIDRENDRVLLSRQSR----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
VI R+L RQ R P AG IEPGE EA RRE EETG+ G++ Y
Sbjct: 39 VIALREGRMLFVRQMRPAVGLAP--LEIPAGLIEPGEDPLEAARRELAEETGLS-GDLTY 95
Query: 284 HTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
S + V P + V K E + D++E
Sbjct: 96 LFS--YFVSPGFTDEKTHVFLAENLKEVEAHPDEDE 129
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
P V +++ +R+ +V+ +R RF W G I PGES E+A+ RE +EE G+ +V
Sbjct: 9 PNVGIVICNRQG-QVMWAR--RFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDV 65
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 224 VIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIE--VGE 280
V+ +I+R+ +L R ++ +W G +EP ES +A+ RE EE GIE VGE
Sbjct: 11 VVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGE 70
Query: 281 VV 282
V
Sbjct: 71 YV 72
>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
pdb|3GWY|B Chain B, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
Length = 140
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 253 AGFIEPGESLEEAVRRETWEETG--IEVGE---VVYHTSQPWPVGPNSMPCQ 299
G +E GESL+EA++RE EE IEVGE V+HT + + ++ C
Sbjct: 40 GGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEITMHAFLCH 91
>pdb|1VHZ|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHZ|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 214 KRIYPRVDP-----VVIMLVIDRENDRVLLSRQSRFVPRMWSC--IAGFIEPGESLEEAV 266
+R+Y R+ P V+I+ ++D D ++L R+ + G I+PGES+ EA
Sbjct: 38 RRVYERMRPTNREAVMIVPIVD---DHLILIREYAVGTESYELGFSKGLIDPGESVYEAA 94
Query: 267 RRETWEETGIEVGEVVY 283
RE EE G ++ +
Sbjct: 95 NRELKEEVGFGANDLTF 111
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 228 VIDRENDRVLLSRQSR----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
VI R+L RQ R P AG IEPGE EA RRE E+TG+ G++ Y
Sbjct: 39 VIALREGRMLFVRQMRPAVGLAP--LEIPAGLIEPGEDPLEAARRELAEQTGLS-GDLTY 95
Query: 284 HTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
S + V P + V K E + D++E
Sbjct: 96 LFS--YFVSPGFTDEKTHVFLAENLKEVEAHPDEDE 129
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 228 VIDRENDRVLLSRQSR----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
VI R+L RQ R P AG IEPGE EA RR+ EETG+ G++ Y
Sbjct: 39 VIALREGRMLFVRQMRPAVGLAP--LEIPAGLIEPGEDPLEAARRQLAEETGLS-GDLTY 95
Query: 284 HTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
S + V P + V K E + D++E
Sbjct: 96 LFS--YFVSPGFTDEKTHVFLAENLKEVEAHPDEDE 129
>pdb|1VIU|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIU|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIU|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIU|D Chain D, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 203
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVP--------RMWSCIAGFIEPGESLEE 264
K+ +Y R + I+L + + V+L RQ R ++ AG ++ E E
Sbjct: 40 KREVYDRGNGATILLY-NTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEP-EV 97
Query: 265 AVRRETWEETGIEVGEV 281
+R+E EETG EVGEV
Sbjct: 98 CIRKEAIEETGYEVGEV 114
>pdb|3O52|A Chain A, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
pdb|3O52|B Chain B, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
pdb|3O52|C Chain C, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
pdb|3O52|D Chain D, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
pdb|3O52|E Chain E, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
Length = 191
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVP--------RMWSCIAGFIEPGESLEE 264
K+ +Y R + I+L + + V+L RQ R ++ AG ++ E E
Sbjct: 38 KREVYDRGNGATILLY-NTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEP-EV 95
Query: 265 AVRRETWEETGIEVGEV 281
+R+E EETG EVGEV
Sbjct: 96 CIRKEAIEETGYEVGEV 112
>pdb|3O6Z|A Chain A, Structure Of The D152a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Mg++
pdb|3O6Z|B Chain B, Structure Of The D152a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Mg++
Length = 191
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVP--------RMWSCIAGFIEPGESLEE 264
K+ +Y R + I+L + + V+L RQ R ++ AG ++ E E
Sbjct: 38 KREVYDRGNGATILLY-NTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEP-EV 95
Query: 265 AVRRETWEETGIEVGEV 281
+R+E EETG EVGEV
Sbjct: 96 CIRKEAIEETGYEVGEV 112
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 223 VVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
VV ++D++N RVLL++ + + + +W G +E GE+ E ++ RE EE G+ V
Sbjct: 31 VVACALLDQDN-RVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHV 87
>pdb|1VHG|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHG|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 214 KRIYPRVDP-----VVIMLVIDRENDRVLLSRQSRFVPRMWSC--IAGFIEPGESLEEAV 266
+R+Y R P V I+ ++D D ++L R+ + G I+PGES+ EA
Sbjct: 38 RRVYERXRPTNREAVXIVPIVD---DHLILIREYAVGTESYELGFSKGLIDPGESVYEAA 94
Query: 267 RRETWEETGIEVGEVVY 283
RE EE G ++ +
Sbjct: 95 NRELKEEVGFGANDLTF 111
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
P V +++ +R+ +V+ +R RF W G I PGES E+A+ R +EE G+ +V
Sbjct: 9 PNVGIVICNRQG-QVMWAR--RFGQHSWQFPQGGINPGESAEQAMYRALFEEVGLSRKDV 65
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282
ND+ + + +P W G I+ GE A RE EETG+ EV+
Sbjct: 24 NDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI 73
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
EN +VLL + R ++ G +E E+ EAV+RE EETGI V
Sbjct: 10 ENGKVLLVKHKRLGVYIYP--GGHVEHNETPIEAVKREFEEETGIVV 54
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 225 IMLVIDRENDRVLLSRQSRFVPRMWSCIA---GFIEPGESLEEAVRRETWEETGIEVGEV 281
I L+ D E RV++ ++ R WS A G +E E+ E+V RE +EETG+ +
Sbjct: 12 ICLIEDLETQRVVMQYRAPENNR-WSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNP 70
Query: 282 VYHTSQPWPV 291
+ WP+
Sbjct: 71 QLVGIKNWPL 80
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 237 LLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH 284
L Q+ + P W+ G ++PGE +A RET EE I ++ H
Sbjct: 20 FLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIH 67
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 222 PVVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI--E 277
PVV + R++ ++L+ + ++ + W G IE GE+ EEA+ RE EE GI E
Sbjct: 23 PVVAGFL--RKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAE 80
Query: 278 VGEV 281
VGE+
Sbjct: 81 VGEL 84
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 233 NDRVLLSRQ--SRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
+ RVLL+++ + + +W G +EPGE+ E A+ RE EE G++
Sbjct: 19 DGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66
>pdb|3ID9|A Chain A, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
pdb|3ID9|B Chain B, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
Length = 171
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
K+R+Y V + I E+++VLL +Q + R WS G +E GE+LEEA RE E
Sbjct: 13 KRRLYIENIXQVRVTGILIEDEKVLLVKQ-KVANRDWSLPGGRVENGETLEEAXIREXRE 71
Query: 273 ETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
ETG+EV +++Y + P++ P L + F EI + E +
Sbjct: 72 ETGLEVKIKKLLYVCDK-----PDASPSLLHITFLLERIEGEITLPSNEFD 117
>pdb|2FB1|A Chain A, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|B Chain B, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|C Chain C, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|D Chain D, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
Length = 226
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 236 VLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
+LL R WS GF++ ES+++A +R E TG+E
Sbjct: 31 LLLKRNFEPAXGEWSLXGGFVQKDESVDDAAKRVLAELTGLE 72
>pdb|3O61|A Chain A, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Gdp-Mannose And Mg++
pdb|3O61|B Chain B, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Gdp-Mannose And Mg++
pdb|3O61|C Chain C, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Gdp-Mannose And Mg++
pdb|3O61|D Chain D, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Gdp-Mannose And Mg++
pdb|3O69|A Chain A, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Mg++
pdb|3O69|B Chain B, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Mg++
Length = 191
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVP--------RMWSCIAGFIEPGESLEE 264
K+ +Y R + I+L + + V+L RQ R ++ AG ++ E E
Sbjct: 38 KREVYDRGNGATILLY-NTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEP-EV 95
Query: 265 AVRRETWEETGIEVGEV 281
+R+ EETG EVGEV
Sbjct: 96 CIRKAAIEETGYEVGEV 112
>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
Length = 145
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETG 275
PR V +L + + + VL+ RQ R+ R + +AG +E GE L A RE EE G
Sbjct: 2 PRGPRAVFILPVTAQGEAVLI-RQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVG 60
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
+ D VLL SR+ P W G +EP E A RE +EE G++
Sbjct: 22 QEDEVLLVSSSRY-PDQWIVPGGGMEPEEEPGGAAVREVYEEAGVK 66
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 14/153 (9%)
Query: 91 GWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFV 150
GW GDC L G L ++ +W I V DG ++ FG +
Sbjct: 60 GWCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPG 119
Query: 151 ELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFC---GHCGEKTIPKEAGKL--K 205
+ + + + L + G ++C G CG P E + +
Sbjct: 120 KCHGIQCTAN-INGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCG----PTELSRWFKQ 174
Query: 206 QCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
+C +A YP+ DP D ++
Sbjct: 175 RCPDA----YSYPQDDPTSTFTCTSWTTDYKVM 203
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
D VLL SR+ P W G +EP E A RE +EE G++
Sbjct: 15 EDEVLLVSSSRY-PDRWIVPGGGMEPEEEPGGAAVREVYEEAGVK 58
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 248 MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
+W +G +E GE+ ++A RE EETG+ V V +
Sbjct: 44 LWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF 79
>pdb|1Q27|A Chain A, Nmr Solution Structure Of Dr0079: An Hypothetical Nudix
Protein From D. Radiodurans
pdb|2O5F|A Chain A, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
pdb|2O5F|B Chain B, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
Length = 171
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 252 IAGFIEPGESLEEAVRRETWEETGIEV 278
+ G ++ GE+ EEA RRE EE +E+
Sbjct: 68 VGGAVQSGETYEEAFRREAREELNVEI 94
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 249 WSCIAGFIEPGESLEEAVRRETWEETGI 276
W+ GF++ ES E+A RE EET +
Sbjct: 69 WAVPGGFVDENESAEQAAERELEEETSL 96
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 202 GKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS-CI---AGFIE 257
GK + + R D V ++ V+ R + +F P M CI AG I+
Sbjct: 29 GKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLID 88
Query: 258 PGESLEEAVRRETWEETG 275
GE+ E A RE EETG
Sbjct: 89 DGETPEAAALRELEEETG 106
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 202 GKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS-CI---AGFIE 257
GK + + R D V ++ V+ R + +F P M CI AG I+
Sbjct: 43 GKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLID 102
Query: 258 PGESLEEAVRRETWEETG 275
GE+ E A RE EETG
Sbjct: 103 DGETPEAAALRELEEETG 120
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 202 GKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS-CI---AGFIE 257
GK + + R D V ++ V+ R + +F P M CI AG I+
Sbjct: 41 GKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLID 100
Query: 258 PGESLEEAVRRETWEETG 275
GE+ E A RE EETG
Sbjct: 101 DGETPEAAALRELEEETG 118
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 202 GKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS-CI---AGFIE 257
GK + + R D V ++ V+ R + +F P M CI AG I+
Sbjct: 28 GKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLID 87
Query: 258 PGESLEEAVRRETWEETG 275
GE+ E A RE EETG
Sbjct: 88 DGETPEAAALRELEEETG 105
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 202 GKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS-CI---AGFIE 257
GK + + R D V ++ V+ R + +F P M CI AG I+
Sbjct: 41 GKTRTWESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLID 100
Query: 258 PGESLEEAVRRETWEETG 275
GE+ E A RE EETG
Sbjct: 101 DGETPEAAALRELEEETG 118
>pdb|3U07|A Chain A, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106.
pdb|3U07|B Chain B, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106.
pdb|3U07|C Chain C, Crystal Structure Of The Vpa0106 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr106
Length = 443
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 90 LGWISLGDCKIFLANSGIELKEEALVY 116
LG +LG +F AN+ ++L E+A +Y
Sbjct: 10 LGLSALGASPVFAANTNVDLAEDAYIY 36
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal Complex,
Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
Length = 129
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 228 VIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
+I EN+ + ++R++ + G IE GE+ E+AV RE EE GI
Sbjct: 10 IIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60
>pdb|2A8R|A Chain A, 2.45 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese In The Presence Of 7-Methyl-Gtp
pdb|2A8R|B Chain B, 2.45 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese In The Presence Of 7-Methyl-Gtp
pdb|2A8S|A Chain A, 2.45 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29, Manganese
And Gtp
pdb|2A8S|B Chain B, 2.45 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29, Manganese
And Gtp
Length = 212
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETG-----IEVGEV 281
+ DR R +L RF R+ GF++ + SLEE ++RE EE G +EV E
Sbjct: 48 LFDRVPIRRVLLMMMRFDGRL-GFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTED 106
Query: 282 VYHTSQ 287
Y +SQ
Sbjct: 107 DYRSSQ 112
>pdb|2A8P|A Chain A, 2.7 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese
pdb|2A8P|B Chain B, 2.7 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese
pdb|2A8Q|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese In The Presence Of 7-Methyl-Gdp
pdb|2A8Q|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between The
Nuclear Snorna Decapping Nudix Hydrolase X29 And
Manganese In The Presence Of 7-Methyl-Gdp
Length = 212
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETG-----IEVGEV 281
+ DR R +L RF R+ GF++ + SLEE ++RE EE G +EV E
Sbjct: 48 LFDRVPIRRVLLMMMRFDGRL-GFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTED 106
Query: 282 VYHTSQ 287
Y +SQ
Sbjct: 107 DYRSSQ 112
>pdb|1U20|A Chain A, Crystal Structure Of Xenopus Laevis Nudix Hydrolase
Nuclear Snorna Decapping Protein X29
pdb|1U20|B Chain B, Crystal Structure Of Xenopus Laevis Nudix Hydrolase
Nuclear Snorna Decapping Protein X29
pdb|2A8T|A Chain A, 2.1 Angstrom Crystal Structure Of The Complex Between The
Nuclear U8 Snorna Decapping Nudix Hydrolase X29,
Manganese And M7g-Ppp-A
pdb|2A8T|B Chain B, 2.1 Angstrom Crystal Structure Of The Complex Between The
Nuclear U8 Snorna Decapping Nudix Hydrolase X29,
Manganese And M7g-Ppp-A
Length = 212
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETG-----IEVGEV 281
+ DR R +L RF R+ GF++ + SLEE ++RE EE G +EV E
Sbjct: 48 LFDRVPIRRVLLMMMRFDGRL-GFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTED 106
Query: 282 VYHTSQ 287
Y +SQ
Sbjct: 107 DYRSSQ 112
>pdb|2CON|A Chain A, Solution Structure Of Rsgi Ruh-035, A Zn-Ribbon Module In
Mouse Cdna
Length = 79
Score = 27.7 bits (60), Expect = 8.2, Method: Composition-based stats.
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 188 FCGHCGEKTIPK 199
FCGHCG KT+ K
Sbjct: 32 FCGHCGNKTLKK 43
>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate
Delta-Isomerase From Salmonella Entericase
Length = 184
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 232 ENDRVLLSRQS---RFVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHT 285
E+ ++L++R+S + P +W+ + G + GE+ EEA+ R E G+E+ ++ VY
Sbjct: 45 EDGQLLVTRRSLSKKAWPGVWTNSVCGHPQQGETTEEAIIRRCRFELGVEITDLTPVYPH 104
Query: 286 SQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEEL 320
PN + + +A + + V+ EE+
Sbjct: 105 FSYRATDPNGIVENEVCPVFAARATSVLQVNSEEV 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,634,696
Number of Sequences: 62578
Number of extensions: 377299
Number of successful extensions: 799
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 78
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)