Query 020612
Match_columns 323
No_of_seqs 468 out of 2119
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2816 NPY1 NTP pyrophosphohy 100.0 9.7E-51 2.1E-55 377.6 14.6 221 64-323 19-239 (279)
2 PRK00241 nudC NADH pyrophospha 100.0 3.1E-41 6.7E-46 315.1 22.1 216 64-323 12-227 (256)
3 KOG3084 NADH pyrophosphatase I 100.0 2.9E-41 6.3E-46 315.4 5.9 167 148-323 116-287 (345)
4 cd04511 Nudix_Hydrolase_4 Memb 99.8 2.1E-18 4.6E-23 144.4 13.1 101 207-316 1-102 (130)
5 cd03429 NADH_pyrophosphatase N 99.7 1E-17 2.2E-22 141.0 11.0 95 222-322 1-95 (131)
6 COG1051 ADP-ribose pyrophospha 99.7 3.8E-16 8.2E-21 134.4 12.8 97 214-313 3-100 (145)
7 cd04679 Nudix_Hydrolase_20 Mem 99.7 4.7E-16 1E-20 128.7 12.4 99 222-322 3-103 (125)
8 cd04684 Nudix_Hydrolase_25 Con 99.7 4.9E-16 1.1E-20 127.9 11.2 88 223-312 2-93 (128)
9 cd03430 GDPMH GDP-mannose glyc 99.7 6.8E-16 1.5E-20 132.2 11.7 99 223-322 14-120 (144)
10 cd04683 Nudix_Hydrolase_24 Mem 99.7 1E-15 2.2E-20 125.5 11.8 95 223-321 2-101 (120)
11 cd04681 Nudix_Hydrolase_22 Mem 99.7 8E-16 1.7E-20 127.8 11.3 99 223-322 3-103 (130)
12 cd04700 DR1025_like DR1025 fro 99.6 1.5E-15 3.2E-20 129.6 12.0 106 214-322 6-113 (142)
13 cd04691 Nudix_Hydrolase_32 Mem 99.6 2E-15 4.4E-20 124.3 12.3 86 223-314 2-90 (117)
14 cd03674 Nudix_Hydrolase_1 Memb 99.6 1.6E-15 3.5E-20 128.4 12.0 98 223-322 4-111 (138)
15 cd04680 Nudix_Hydrolase_21 Mem 99.6 1.1E-15 2.3E-20 124.9 10.4 94 223-322 2-96 (120)
16 cd03675 Nudix_Hydrolase_2 Cont 99.6 2E-15 4.4E-20 126.2 12.0 95 224-321 3-98 (134)
17 cd04696 Nudix_Hydrolase_37 Mem 99.6 2.2E-15 4.8E-20 124.8 11.9 93 222-316 3-97 (125)
18 cd04671 Nudix_Hydrolase_13 Mem 99.6 2.4E-15 5.2E-20 125.5 11.9 85 223-314 2-87 (123)
19 cd04673 Nudix_Hydrolase_15 Mem 99.6 2.4E-15 5.3E-20 122.9 11.3 95 223-320 2-100 (122)
20 PRK15434 GDP-mannose mannosyl 99.6 2.4E-15 5.3E-20 131.4 11.8 99 223-322 19-125 (159)
21 PLN02325 nudix hydrolase 99.6 3.9E-15 8.4E-20 127.6 12.8 94 215-310 3-98 (144)
22 cd04677 Nudix_Hydrolase_18 Mem 99.6 2.7E-15 5.8E-20 124.7 11.1 67 218-287 4-70 (132)
23 cd03426 CoAse Coenzyme A pyrop 99.6 2.5E-15 5.5E-20 130.3 10.8 98 222-322 3-106 (157)
24 cd03673 Ap6A_hydrolase Diadeno 99.6 2.9E-15 6.3E-20 123.8 10.6 97 223-321 3-103 (131)
25 cd04678 Nudix_Hydrolase_19 Mem 99.6 4.9E-15 1.1E-19 123.1 12.0 98 222-321 3-104 (129)
26 cd04670 Nudix_Hydrolase_12 Mem 99.6 5.6E-15 1.2E-19 122.6 11.8 67 222-289 3-69 (127)
27 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 5.8E-15 1.3E-19 123.9 10.6 97 222-322 3-103 (137)
28 cd04669 Nudix_Hydrolase_11 Mem 99.6 1E-14 2.3E-19 120.8 11.6 83 224-314 3-85 (121)
29 cd03427 MTH1 MutT homolog-1 (M 99.6 1E-14 2.2E-19 122.2 11.7 89 223-314 3-92 (137)
30 cd04682 Nudix_Hydrolase_23 Mem 99.6 6.9E-15 1.5E-19 121.5 10.4 95 223-322 3-102 (122)
31 cd04672 Nudix_Hydrolase_14 Mem 99.6 1.6E-14 3.4E-19 119.5 12.1 94 223-321 4-99 (123)
32 cd04690 Nudix_Hydrolase_31 Mem 99.6 1.8E-14 3.8E-19 117.6 11.8 84 224-310 3-88 (118)
33 cd04687 Nudix_Hydrolase_28 Mem 99.6 1.8E-14 3.9E-19 119.8 12.0 89 222-312 2-95 (128)
34 cd04697 Nudix_Hydrolase_38 Mem 99.6 1.6E-14 3.4E-19 120.4 11.3 95 223-322 2-100 (126)
35 cd03672 Dcp2p mRNA decapping e 99.6 9E-15 2E-19 125.6 9.9 58 222-281 2-59 (145)
36 cd04688 Nudix_Hydrolase_29 Mem 99.6 1.7E-14 3.7E-19 119.5 11.2 86 224-313 4-90 (126)
37 cd04664 Nudix_Hydrolase_7 Memb 99.6 2E-14 4.4E-19 119.5 11.2 97 224-321 4-105 (129)
38 cd03671 Ap4A_hydrolase_plant_l 99.6 2E-14 4.3E-19 123.0 11.3 65 221-287 3-67 (147)
39 cd04676 Nudix_Hydrolase_17 Mem 99.6 3.6E-14 7.9E-19 116.3 11.9 97 221-320 2-103 (129)
40 PRK15472 nucleoside triphospha 99.6 2.1E-14 4.7E-19 121.6 10.8 55 224-279 6-63 (141)
41 cd04695 Nudix_Hydrolase_36 Mem 99.6 2.4E-14 5.2E-19 120.0 10.3 51 232-282 12-62 (131)
42 cd04693 Nudix_Hydrolase_34 Mem 99.5 3E-14 6.6E-19 118.3 10.2 94 223-322 2-101 (127)
43 cd04689 Nudix_Hydrolase_30 Mem 99.5 6.7E-14 1.5E-18 115.8 11.0 82 224-309 4-86 (125)
44 cd04692 Nudix_Hydrolase_33 Mem 99.5 6E-14 1.3E-18 119.5 10.8 100 223-322 4-115 (144)
45 PRK09438 nudB dihydroneopterin 99.5 9E-14 2E-18 118.7 11.1 62 221-284 7-70 (148)
46 cd04667 Nudix_Hydrolase_10 Mem 99.5 9.2E-14 2E-18 113.1 10.3 78 233-320 10-87 (112)
47 cd04674 Nudix_Hydrolase_16 Mem 99.5 2E-13 4.3E-18 113.8 12.5 85 222-313 5-92 (118)
48 cd04699 Nudix_Hydrolase_39 Mem 99.5 1.1E-13 2.3E-18 114.1 10.4 63 222-285 2-67 (129)
49 PF00293 NUDIX: NUDIX domain; 99.5 1.2E-13 2.5E-18 113.8 10.4 88 222-310 3-93 (134)
50 cd04666 Nudix_Hydrolase_9 Memb 99.5 1.5E-13 3.3E-18 114.6 11.1 76 233-310 14-91 (122)
51 cd03428 Ap4A_hydrolase_human_l 99.5 5.6E-14 1.2E-18 116.6 8.4 81 234-321 17-102 (130)
52 cd04686 Nudix_Hydrolase_27 Mem 99.5 2.5E-13 5.3E-18 114.1 11.8 93 223-319 2-101 (131)
53 PRK10707 putative NUDIX hydrol 99.5 1.2E-13 2.7E-18 123.9 10.2 100 221-322 31-134 (190)
54 PRK15393 NUDIX hydrolase YfcD; 99.5 2E-13 4.3E-18 121.3 10.8 95 222-322 38-137 (180)
55 cd04665 Nudix_Hydrolase_8 Memb 99.5 5.3E-13 1.2E-17 111.1 12.3 81 224-312 3-83 (118)
56 cd04694 Nudix_Hydrolase_35 Mem 99.5 4.7E-13 1E-17 114.9 12.0 64 223-287 3-73 (143)
57 PRK10729 nudF ADP-ribose pyrop 99.5 5.2E-13 1.1E-17 121.0 12.0 88 217-308 46-140 (202)
58 PRK00714 RNA pyrophosphohydrol 99.5 5.5E-13 1.2E-17 115.8 11.7 65 221-287 8-72 (156)
59 cd02885 IPP_Isomerase Isopente 99.5 2.9E-13 6.3E-18 118.2 9.7 100 221-322 30-136 (165)
60 TIGR00052 nudix-type nucleosid 99.5 5.1E-13 1.1E-17 119.4 11.1 87 221-310 44-137 (185)
61 PRK11762 nudE adenosine nucleo 99.4 9.2E-13 2E-17 117.4 12.5 83 223-309 49-133 (185)
62 PRK03759 isopentenyl-diphospha 99.4 4.3E-13 9.4E-18 119.4 10.4 101 220-322 33-140 (184)
63 PRK10546 pyrimidine (deoxy)nuc 99.4 1.4E-12 3.1E-17 108.9 11.8 81 225-309 7-89 (135)
64 PRK10776 nucleoside triphospha 99.4 1.5E-12 3.3E-17 107.0 11.7 67 224-291 7-75 (129)
65 cd04661 MRP_L46 Mitochondrial 99.4 7.9E-13 1.7E-17 111.4 9.9 84 232-316 11-103 (132)
66 cd03425 MutT_pyrophosphohydrol 99.4 2.1E-12 4.6E-17 104.7 11.5 85 223-311 3-89 (124)
67 TIGR02705 nudix_YtkD nucleosid 99.4 2.8E-12 6.1E-17 111.8 12.9 81 223-311 26-106 (156)
68 cd02883 Nudix_Hydrolase Nudix 99.4 2.8E-12 6E-17 102.9 11.5 89 223-313 2-90 (123)
69 PRK05379 bifunctional nicotina 99.4 2.6E-12 5.7E-17 124.9 11.9 94 215-311 197-297 (340)
70 TIGR02150 IPP_isom_1 isopenten 99.4 1.9E-12 4.2E-17 112.5 9.4 97 221-322 27-130 (158)
71 TIGR00586 mutt mutator mutT pr 99.4 9.2E-12 2E-16 102.6 11.7 67 224-291 7-75 (128)
72 cd03676 Nudix_hydrolase_3 Memb 99.4 2.7E-12 5.9E-17 113.5 9.0 96 227-322 40-146 (180)
73 PLN02709 nudix hydrolase 99.3 6.5E-12 1.4E-16 115.1 10.2 98 222-322 34-143 (222)
74 cd04685 Nudix_Hydrolase_26 Mem 99.3 1.1E-11 2.4E-16 105.0 10.4 86 223-310 2-93 (133)
75 PRK15009 GDP-mannose pyrophosp 99.3 1.3E-11 2.9E-16 110.9 11.5 84 222-309 46-137 (191)
76 cd04662 Nudix_Hydrolase_5 Memb 99.3 3.5E-11 7.5E-16 101.4 10.6 51 229-279 10-65 (126)
77 PRK08999 hypothetical protein; 99.1 3.7E-10 8.1E-15 107.8 11.7 68 223-291 7-76 (312)
78 COG0494 MutT NTP pyrophosphohy 99.1 6E-10 1.3E-14 90.9 10.2 68 223-291 13-83 (161)
79 PF09296 NUDIX-like: NADH pyro 99.1 3E-10 6.5E-15 90.0 8.0 98 64-182 1-98 (98)
80 PLN02791 Nudix hydrolase homol 99.0 2.6E-09 5.5E-14 113.0 11.0 102 221-322 32-146 (770)
81 cd04663 Nudix_Hydrolase_6 Memb 99.0 3.7E-09 7.9E-14 89.2 9.8 42 234-278 14-55 (126)
82 PLN03143 nudix hydrolase; Prov 98.9 5.3E-09 1.1E-13 99.7 10.2 69 216-284 124-198 (291)
83 PLN02552 isopentenyl-diphospha 98.9 8E-09 1.7E-13 96.4 10.7 100 222-322 57-191 (247)
84 cd03670 ADPRase_NUDT9 ADP-ribo 98.8 1.3E-08 2.7E-13 91.3 9.2 43 234-278 49-91 (186)
85 KOG2839 Diadenosine and diphos 98.8 1.8E-08 3.9E-13 86.0 6.8 62 225-287 13-76 (145)
86 KOG3069 Peroxisomal NUDIX hydr 98.8 2.3E-08 4.9E-13 91.5 7.9 112 212-323 34-152 (246)
87 KOG3041 Nucleoside diphosphate 98.7 1.1E-07 2.4E-12 84.9 11.0 62 216-277 69-133 (225)
88 PF09297 zf-NADH-PPase: NADH p 98.6 9.4E-09 2E-13 66.3 1.3 32 184-217 1-32 (32)
89 KOG0648 Predicted NUDIX hydrol 98.2 9.3E-07 2E-11 83.9 3.6 64 216-280 110-176 (295)
90 cd03431 DNA_Glycosylase_C DNA 98.2 1.5E-05 3.2E-10 64.2 9.6 71 233-309 13-85 (118)
91 COG1443 Idi Isopentenyldiphosp 98.1 5.3E-06 1.1E-10 73.1 6.7 109 212-322 24-141 (185)
92 PLN02839 nudix hydrolase 98.0 2.3E-05 5.1E-10 76.7 8.9 89 233-322 217-315 (372)
93 COG4119 Predicted NTP pyrophos 97.8 9.3E-05 2E-09 62.2 7.5 53 235-287 19-77 (161)
94 PF14803 Nudix_N_2: Nudix N-te 97.3 9.6E-05 2.1E-09 48.4 0.7 29 187-217 1-33 (34)
95 KOG4195 Transient receptor pot 97.0 0.0012 2.5E-08 60.5 5.0 38 235-274 140-177 (275)
96 PF14815 NUDIX_4: NUDIX domain 96.8 0.002 4.3E-08 52.4 5.1 81 226-311 2-84 (114)
97 KOG4432 Uncharacterized NUDIX 96.5 0.0029 6.4E-08 60.2 4.1 93 217-310 22-141 (405)
98 PRK00432 30S ribosomal protein 95.7 0.0062 1.3E-07 43.3 1.7 32 184-218 18-49 (50)
99 COG1998 RPS31 Ribosomal protei 95.5 0.0074 1.6E-07 42.5 1.4 34 183-218 16-49 (51)
100 PF03119 DNA_ligase_ZBD: NAD-d 95.3 0.0071 1.5E-07 37.8 0.8 26 188-213 1-27 (28)
101 KOG2937 Decapping enzyme compl 95.0 0.0034 7.4E-08 60.5 -1.9 63 215-279 76-138 (348)
102 smart00661 RPOL9 RNA polymeras 94.5 0.05 1.1E-06 38.1 3.6 31 187-219 1-33 (52)
103 COG4112 Predicted phosphoester 94.1 0.46 9.9E-06 41.9 9.2 57 233-289 71-143 (203)
104 PF02150 RNA_POL_M_15KD: RNA p 92.3 0.05 1.1E-06 35.7 0.5 29 186-216 1-30 (35)
105 PF13869 NUDIX_2: Nucleotide h 92.2 0.31 6.7E-06 43.9 5.6 41 234-277 58-98 (188)
106 KOG0142 Isopentenyl pyrophosph 91.6 0.3 6.6E-06 44.4 4.8 101 221-322 52-171 (225)
107 PF13240 zinc_ribbon_2: zinc-r 89.3 0.21 4.6E-06 29.7 1.2 22 188-215 1-22 (23)
108 PF13248 zf-ribbon_3: zinc-rib 88.7 0.18 3.8E-06 30.8 0.6 12 185-196 15-26 (26)
109 KOG4313 Thiamine pyrophosphoki 88.1 1.3 2.9E-05 41.6 6.2 64 226-289 138-210 (306)
110 KOG4432 Uncharacterized NUDIX 87.2 1.5 3.2E-05 42.3 6.0 84 223-309 231-345 (405)
111 PF12773 DZR: Double zinc ribb 86.4 0.48 1E-05 32.9 1.8 32 184-218 10-41 (50)
112 PRK13844 recombination protein 86.3 0.65 1.4E-05 42.3 3.0 91 171-274 42-134 (200)
113 PF07282 OrfB_Zn_ribbon: Putat 85.7 0.51 1.1E-05 35.0 1.8 34 180-216 23-56 (69)
114 PF04606 Ogr_Delta: Ogr/Delta- 85.3 0.52 1.1E-05 32.8 1.5 29 188-216 1-37 (47)
115 TIGR00615 recR recombination p 83.9 0.99 2.1E-05 41.0 3.1 91 171-274 38-130 (195)
116 PF06677 Auto_anti-p27: Sjogre 83.1 1 2.2E-05 30.7 2.1 33 178-213 9-41 (41)
117 PRK00076 recR recombination pr 82.4 1.1 2.4E-05 40.7 2.8 91 171-274 38-130 (196)
118 PRK00398 rpoP DNA-directed RNA 82.0 1 2.2E-05 30.9 1.9 27 188-216 5-31 (46)
119 COG0353 RecR Recombinational D 81.8 1.4 3E-05 40.0 3.2 92 171-275 39-132 (198)
120 PRK00420 hypothetical protein; 81.7 1.3 2.8E-05 36.7 2.7 28 185-215 22-49 (112)
121 KOG1689 mRNA cleavage factor I 81.6 3.6 7.7E-05 36.6 5.5 49 225-276 74-123 (221)
122 COG1594 RPB9 DNA-directed RNA 81.1 0.93 2E-05 37.5 1.7 29 186-216 2-32 (113)
123 PF07754 DUF1610: Domain of un 79.8 1.3 2.9E-05 26.7 1.6 24 189-214 1-24 (24)
124 PF09889 DUF2116: Uncharacteri 77.8 0.7 1.5E-05 34.0 -0.0 26 185-215 2-27 (59)
125 smart00532 LIGANc Ligase N fam 77.6 1.3 2.8E-05 45.1 1.8 31 185-215 398-428 (441)
126 TIGR01384 TFS_arch transcripti 77.2 4 8.6E-05 32.7 4.2 28 187-218 1-28 (104)
127 PRK09678 DNA-binding transcrip 76.9 1.7 3.8E-05 33.2 1.9 30 187-216 2-39 (72)
128 COG1645 Uncharacterized Zn-fin 75.9 1.5 3.3E-05 37.3 1.4 25 187-215 29-53 (131)
129 PF01396 zf-C4_Topoisom: Topoi 75.7 2.1 4.6E-05 28.6 1.9 30 187-216 2-34 (39)
130 TIGR00575 dnlj DNA ligase, NAD 75.0 1.6 3.4E-05 46.5 1.7 29 186-214 392-420 (652)
131 PF06044 DRP: Dam-replacing fa 74.7 1 2.2E-05 42.1 0.2 32 181-214 26-61 (254)
132 PF09538 FYDLN_acid: Protein o 73.7 2.3 5.1E-05 35.0 2.0 31 185-218 8-38 (108)
133 COG0272 Lig NAD-dependent DNA 72.3 1.9 4E-05 45.8 1.4 33 185-217 403-436 (667)
134 PF09151 DUF1936: Domain of un 71.0 2.9 6.3E-05 26.8 1.5 28 188-215 3-35 (36)
135 PRK10445 endonuclease VIII; Pr 69.7 2.6 5.6E-05 39.8 1.6 32 182-213 231-262 (263)
136 PRK07956 ligA NAD-dependent DN 69.4 2.5 5.5E-05 45.1 1.7 29 186-214 404-433 (665)
137 PF12677 DUF3797: Domain of un 69.1 3.3 7.3E-05 29.2 1.7 36 177-215 4-47 (49)
138 PF07295 DUF1451: Protein of u 68.7 2.7 5.8E-05 36.4 1.4 50 169-220 89-144 (146)
139 smart00659 RPOLCX RNA polymera 68.5 3.7 8.1E-05 28.3 1.8 26 188-216 4-29 (44)
140 PRK14559 putative protein seri 67.9 2.9 6.2E-05 44.6 1.7 14 184-197 13-26 (645)
141 PF03604 DNA_RNApol_7kD: DNA d 67.8 3.6 7.8E-05 26.5 1.5 26 188-216 2-27 (32)
142 TIGR02098 MJ0042_CXXC MJ0042 f 67.7 2.5 5.3E-05 27.6 0.7 28 188-217 4-36 (38)
143 PF10571 UPF0547: Uncharacteri 67.6 4 8.7E-05 25.0 1.6 24 187-216 1-24 (26)
144 PF08271 TF_Zn_Ribbon: TFIIB z 67.4 3.7 8E-05 27.8 1.6 27 188-216 2-29 (43)
145 PF08772 NOB1_Zn_bind: Nin one 67.3 2.3 4.9E-05 32.7 0.6 14 185-198 23-36 (73)
146 PF12760 Zn_Tnp_IS1595: Transp 66.5 4.9 0.00011 27.6 2.1 35 177-214 10-45 (46)
147 COG1996 RPC10 DNA-directed RNA 66.2 2.9 6.3E-05 29.6 0.9 30 188-219 8-37 (49)
148 COG1096 Predicted RNA-binding 66.0 3.1 6.8E-05 37.4 1.3 30 186-219 149-178 (188)
149 PRK10880 adenine DNA glycosyla 65.9 9.8 0.00021 37.6 4.8 39 233-278 241-281 (350)
150 PRK11032 hypothetical protein; 65.5 3.3 7.1E-05 36.5 1.3 33 186-220 124-156 (160)
151 PF09862 DUF2089: Protein of u 64.3 4 8.6E-05 33.9 1.5 22 189-216 1-22 (113)
152 TIGR01562 FdhE formate dehydro 64.3 4.6 9.9E-05 39.2 2.2 38 181-220 179-225 (305)
153 PRK01103 formamidopyrimidine/5 64.2 4.1 8.8E-05 38.6 1.8 31 182-214 241-273 (274)
154 PF14443 DBC1: DBC1 64.1 34 0.00074 29.0 7.0 45 235-279 9-59 (126)
155 COG1571 Predicted DNA-binding 64.1 2.9 6.3E-05 42.1 0.8 37 177-216 341-377 (421)
156 PF14205 Cys_rich_KTR: Cystein 64.1 6.4 0.00014 28.5 2.3 28 187-216 5-38 (55)
157 PRK03564 formate dehydrogenase 63.5 9.6 0.00021 37.0 4.2 34 185-220 186-227 (309)
158 PHA00626 hypothetical protein 63.1 5.8 0.00013 28.9 2.0 27 188-216 2-33 (59)
159 COG1997 RPL43A Ribosomal prote 62.8 5 0.00011 31.8 1.7 29 185-215 34-62 (89)
160 TIGR02300 FYDLN_acid conserved 62.2 5.8 0.00013 33.6 2.1 29 185-216 8-36 (129)
161 PF08274 PhnA_Zn_Ribbon: PhnA 61.9 3.7 8.1E-05 26.1 0.7 26 187-215 3-28 (30)
162 COG4260 Membrane protease subu 60.9 4.2 9.2E-05 39.0 1.2 34 180-215 305-343 (345)
163 PRK13945 formamidopyrimidine-D 60.5 5.1 0.00011 38.1 1.7 30 182-213 250-281 (282)
164 PRK14350 ligA NAD-dependent DN 60.1 4.7 0.0001 43.2 1.5 29 185-215 397-425 (669)
165 PHA02942 putative transposase; 60.0 5.9 0.00013 39.5 2.1 29 185-216 324-352 (383)
166 PRK14810 formamidopyrimidine-D 60.0 5.2 0.00011 37.9 1.7 30 182-213 240-271 (272)
167 PF13717 zinc_ribbon_4: zinc-r 59.2 6.3 0.00014 25.9 1.5 28 188-217 4-36 (36)
168 COG4640 Predicted membrane pro 58.8 5.5 0.00012 39.8 1.6 25 186-216 1-25 (465)
169 TIGR00577 fpg formamidopyrimid 58.2 5.7 0.00012 37.6 1.6 30 182-213 241-272 (272)
170 PF13453 zf-TFIIB: Transcripti 58.0 6.2 0.00013 26.4 1.3 29 188-218 1-31 (41)
171 PRK11827 hypothetical protein; 57.0 8 0.00017 28.5 1.9 32 187-221 9-40 (60)
172 PF13719 zinc_ribbon_5: zinc-r 56.4 5.6 0.00012 26.2 0.9 27 188-216 4-35 (37)
173 KOG2906 RNA polymerase III sub 56.1 7 0.00015 31.7 1.5 27 187-215 2-30 (105)
174 PRK14811 formamidopyrimidine-D 56.1 6.6 0.00014 37.2 1.7 32 182-215 231-264 (269)
175 PRK10220 hypothetical protein; 55.4 10 0.00022 31.3 2.4 32 186-220 3-34 (111)
176 PF14952 zf-tcix: Putative tre 55.2 8.5 0.00018 26.6 1.6 29 184-216 9-37 (44)
177 COG0675 Transposase and inacti 54.9 5.6 0.00012 37.3 1.0 31 180-217 303-333 (364)
178 PF04216 FdhE: Protein involve 54.5 5.3 0.00011 38.1 0.7 33 186-220 172-212 (290)
179 COG3791 Uncharacterized conser 54.4 7.2 0.00016 33.0 1.4 15 186-200 69-83 (133)
180 COG1779 C4-type Zn-finger prot 53.8 25 0.00053 32.1 4.8 88 184-276 12-124 (201)
181 KOG2907 RNA polymerase I trans 53.5 4.5 9.7E-05 33.6 0.1 32 185-218 6-37 (116)
182 TIGR00244 transcriptional regu 52.5 11 0.00025 32.6 2.4 34 188-223 2-47 (147)
183 COG2824 PhnA Uncharacterized Z 52.4 16 0.00035 30.0 3.1 31 186-219 3-33 (112)
184 PF10083 DUF2321: Uncharacteri 50.9 1.8 3.8E-05 37.9 -2.8 23 184-215 26-48 (158)
185 PF14353 CpXC: CpXC protein 49.9 31 0.00067 28.6 4.6 45 188-239 3-66 (128)
186 TIGR00686 phnA alkylphosphonat 49.5 11 0.00024 31.1 1.7 30 187-219 3-32 (109)
187 COG1439 Predicted nucleic acid 49.1 8.8 0.00019 34.3 1.2 16 184-199 151-166 (177)
188 PF01599 Ribosomal_S27: Riboso 48.9 10 0.00022 26.7 1.2 29 184-214 16-46 (47)
189 COG3677 Transposase and inacti 48.8 27 0.00058 29.6 4.0 40 175-216 19-63 (129)
190 PRK12495 hypothetical protein; 47.9 11 0.00023 35.0 1.6 30 184-217 40-69 (226)
191 COG1545 Predicted nucleic-acid 47.8 35 0.00076 29.1 4.7 18 220-237 82-99 (140)
192 PF03487 IL13: Interleukin-13; 46.8 18 0.00038 24.6 2.1 25 250-274 12-36 (43)
193 PF08792 A2L_zn_ribbon: A2L zi 46.2 15 0.00032 23.8 1.6 29 186-216 3-31 (33)
194 PF04981 NMD3: NMD3 family ; 44.9 41 0.00089 31.1 5.0 25 189-218 1-25 (236)
195 COG1656 Uncharacterized conser 44.9 9.6 0.00021 33.7 0.8 36 182-219 92-143 (165)
196 PRK12286 rpmF 50S ribosomal pr 44.5 14 0.0003 26.9 1.4 23 186-215 27-49 (57)
197 TIGR01084 mutY A/G-specific ad 44.0 42 0.0009 32.0 5.0 22 232-253 237-260 (275)
198 PRK14351 ligA NAD-dependent DN 42.2 14 0.00029 39.9 1.5 28 185-214 422-450 (689)
199 COG4469 CoiA Competence protei 42.1 13 0.00028 36.5 1.2 17 187-203 26-42 (342)
200 PRK14890 putative Zn-ribbon RN 41.7 19 0.00041 26.5 1.8 27 187-215 8-34 (59)
201 TIGR01206 lysW lysine biosynth 40.7 17 0.00036 26.2 1.4 28 188-217 4-33 (54)
202 PRK13130 H/ACA RNA-protein com 40.7 17 0.00038 26.4 1.4 25 184-216 3-27 (56)
203 PRK09521 exosome complex RNA-b 40.6 16 0.00034 32.6 1.5 32 186-220 149-180 (189)
204 PF01780 Ribosomal_L37ae: Ribo 40.6 9.5 0.00021 30.4 0.1 30 184-215 33-62 (90)
205 KOG2937 Decapping enzyme compl 40.2 7.1 0.00015 38.2 -0.8 70 210-279 227-296 (348)
206 TIGR02820 formald_GSH S-(hydro 39.9 11 0.00025 33.8 0.5 28 251-278 134-162 (182)
207 PTZ00255 60S ribosomal protein 39.8 18 0.00039 28.9 1.5 31 183-215 33-63 (90)
208 PRK04023 DNA polymerase II lar 38.6 19 0.00041 40.2 2.0 26 182-215 622-647 (1121)
209 PF13824 zf-Mss51: Zinc-finger 38.5 24 0.00053 25.6 1.9 25 188-217 1-25 (55)
210 KOG3799 Rab3 effector RIM1 and 37.6 12 0.00025 32.2 0.2 25 184-208 87-111 (169)
211 TIGR01031 rpmF_bact ribosomal 37.0 18 0.00039 26.1 1.1 22 186-214 26-47 (55)
212 KOG4548 Mitochondrial ribosoma 36.7 47 0.001 31.4 4.0 43 235-277 140-183 (263)
213 PF02132 RecR: RecR protein; 36.4 19 0.0004 24.2 1.0 24 174-197 5-28 (41)
214 COG4068 Uncharacterized protei 36.3 15 0.00033 27.0 0.6 24 185-213 7-30 (64)
215 PRK12496 hypothetical protein; 35.4 15 0.00033 32.3 0.5 13 187-199 144-156 (164)
216 COG1327 Predicted transcriptio 34.9 39 0.00085 29.5 3.0 31 188-220 2-44 (156)
217 PF01485 IBR: IBR domain; Int 34.6 21 0.00045 25.2 1.1 31 183-215 15-49 (64)
218 PF03884 DUF329: Domain of unk 34.4 16 0.00035 26.7 0.4 25 188-213 4-29 (57)
219 PRK14892 putative transcriptio 34.3 27 0.00058 28.3 1.8 31 184-216 19-52 (99)
220 PF12647 RNHCP: RNHCP domain; 34.3 88 0.0019 25.1 4.6 26 187-214 5-32 (92)
221 smart00647 IBR In Between Ring 34.2 43 0.00092 23.6 2.7 32 182-215 14-49 (64)
222 PRK14714 DNA polymerase II lar 33.3 22 0.00047 40.6 1.4 11 186-196 667-677 (1337)
223 PRK00464 nrdR transcriptional 33.1 30 0.00066 30.2 2.0 32 188-221 2-45 (154)
224 COG4111 Uncharacterized conser 33.0 1.8E+02 0.004 27.8 7.2 79 224-309 28-108 (322)
225 PRK13910 DNA glycosylase MutY; 32.7 56 0.0012 31.4 4.0 21 233-253 196-217 (289)
226 KOG2463 Predicted RNA-binding 32.3 18 0.00039 35.5 0.5 12 186-197 257-268 (376)
227 PRK00504 rpmG 50S ribosomal pr 31.3 23 0.00051 25.1 0.9 16 185-200 33-48 (50)
228 COG2888 Predicted Zn-ribbon RN 31.2 28 0.00061 25.7 1.2 27 186-214 9-35 (61)
229 PRK00423 tfb transcription ini 31.1 34 0.00073 33.0 2.2 30 184-215 9-39 (310)
230 PF01927 Mut7-C: Mut7-C RNAse 31.1 29 0.00063 29.7 1.6 36 182-219 86-137 (147)
231 PRK14873 primosome assembly pr 31.0 34 0.00074 36.7 2.4 17 63-79 248-264 (665)
232 PF09538 FYDLN_acid: Protein o 31.0 24 0.00052 29.0 1.0 19 199-219 4-22 (108)
233 TIGR00280 L37a ribosomal prote 30.8 49 0.0011 26.5 2.7 30 184-215 33-62 (91)
234 KOG0402 60S ribosomal protein 30.7 37 0.0008 26.8 1.9 29 185-215 35-63 (92)
235 cd04476 RPA1_DBD_C RPA1_DBD_C: 30.1 1.1E+02 0.0023 26.4 5.0 44 186-232 34-78 (166)
236 smart00834 CxxC_CXXC_SSSS Puta 29.6 35 0.00076 22.1 1.5 25 188-214 7-34 (41)
237 COG3024 Uncharacterized protei 28.8 27 0.00058 26.2 0.8 31 184-215 5-36 (65)
238 PRK08402 replication factor A; 28.8 77 0.0017 31.4 4.3 52 183-238 209-260 (355)
239 TIGR00373 conserved hypothetic 28.7 18 0.00039 31.5 -0.1 29 185-215 108-137 (158)
240 PF11781 RRN7: RNA polymerase 28.7 31 0.00067 22.7 1.0 31 182-215 3-34 (36)
241 PRK14714 DNA polymerase II lar 28.5 33 0.00071 39.3 1.8 12 186-197 679-690 (1337)
242 PRK06266 transcription initiat 28.4 20 0.00043 32.0 0.1 30 185-216 116-146 (178)
243 PRK03988 translation initiatio 28.2 40 0.00086 28.9 1.9 38 177-216 93-133 (138)
244 PF01783 Ribosomal_L32p: Ribos 28.0 26 0.00057 25.2 0.7 20 187-213 27-46 (56)
245 PF14446 Prok-RING_1: Prokaryo 27.9 38 0.00083 24.5 1.5 27 186-216 5-31 (54)
246 PRK14559 putative protein seri 27.6 35 0.00076 36.5 1.8 25 186-216 27-51 (645)
247 PF04828 GFA: Glutathione-depe 27.5 15 0.00031 27.8 -0.8 14 185-198 47-60 (92)
248 PF11023 DUF2614: Protein of u 27.5 28 0.0006 28.9 0.8 28 184-215 67-94 (114)
249 PRK00564 hypA hydrogenase nick 27.2 38 0.00082 28.0 1.6 38 176-216 61-98 (117)
250 smart00504 Ubox Modified RING 27.0 48 0.001 23.3 1.9 19 179-197 28-46 (63)
251 PRK03976 rpl37ae 50S ribosomal 26.7 64 0.0014 25.8 2.7 30 184-215 34-63 (90)
252 PRK00418 DNA gyrase inhibitor; 26.7 28 0.00061 25.9 0.6 29 185-214 5-34 (62)
253 PRK12380 hydrogenase nickel in 26.5 34 0.00074 28.1 1.2 40 173-216 57-96 (113)
254 PRK01343 zinc-binding protein; 26.5 36 0.00078 24.9 1.1 27 184-214 7-33 (57)
255 COG0266 Nei Formamidopyrimidin 26.2 37 0.0008 32.5 1.5 30 182-213 241-272 (273)
256 TIGR03831 YgiT_finger YgiT-typ 26.2 46 0.00099 21.9 1.6 8 189-196 1-8 (46)
257 COG1326 Uncharacterized archae 26.1 44 0.00096 30.4 1.9 30 185-216 5-40 (201)
258 TIGR00311 aIF-2beta translatio 26.1 48 0.0011 28.2 2.0 38 177-216 88-128 (133)
259 KOG1710 MYND Zn-finger and ank 25.8 25 0.00055 34.1 0.3 49 170-219 303-354 (396)
260 COG0375 HybF Zn finger protein 25.7 38 0.00083 28.2 1.3 15 189-203 89-103 (115)
261 PRK03681 hypA hydrogenase nick 25.7 40 0.00086 27.8 1.4 41 173-216 57-97 (114)
262 PF14354 Lar_restr_allev: Rest 25.7 45 0.00097 23.8 1.6 27 186-214 3-37 (61)
263 COG2260 Predicted Zn-ribbon RN 25.5 36 0.00078 25.0 1.0 11 188-198 19-29 (59)
264 TIGR00100 hypA hydrogenase nic 25.4 43 0.00094 27.6 1.6 38 176-217 60-97 (115)
265 TIGR01053 LSD1 zinc finger dom 25.4 47 0.001 21.2 1.4 27 187-215 2-28 (31)
266 smart00531 TFIIE Transcription 25.2 23 0.00049 30.3 -0.1 31 186-218 99-135 (147)
267 COG0267 RpmG Ribosomal protein 25.0 31 0.00067 24.6 0.6 16 185-200 33-48 (50)
268 PF13005 zf-IS66: zinc-finger 25.0 35 0.00075 23.0 0.8 14 186-199 2-15 (47)
269 COG3809 Uncharacterized protei 25.0 42 0.00092 26.2 1.3 28 187-216 2-31 (88)
270 PF08646 Rep_fac-A_C: Replicat 24.9 75 0.0016 26.7 3.1 44 186-232 18-64 (146)
271 PRK00595 rpmG 50S ribosomal pr 24.8 35 0.00076 24.4 0.8 15 186-200 37-51 (53)
272 PRK03824 hypA hydrogenase nick 24.6 45 0.00097 28.3 1.6 14 182-195 66-79 (135)
273 KOG0909 Peptide:N-glycanase [P 23.8 60 0.0013 33.1 2.5 43 177-221 145-210 (500)
274 TIGR01023 rpmG_bact ribosomal 23.7 39 0.00084 24.3 0.9 15 186-200 38-52 (54)
275 KOG3970 Predicted E3 ubiquitin 23.6 77 0.0017 29.6 3.0 46 176-223 37-111 (299)
276 TIGR03655 anti_R_Lar restricti 23.4 60 0.0013 22.8 1.8 11 187-197 2-12 (53)
277 PF14690 zf-ISL3: zinc-finger 23.3 50 0.0011 22.1 1.4 13 187-199 3-15 (47)
278 PRK04179 rpl37e 50S ribosomal 23.2 44 0.00095 24.8 1.1 25 185-214 16-40 (62)
279 COG3364 Zn-ribbon containing p 23.2 28 0.00061 28.5 0.1 29 188-218 4-32 (112)
280 PRK08665 ribonucleotide-diphos 23.0 53 0.0011 35.8 2.1 25 187-215 725-749 (752)
281 KOG0648 Predicted NUDIX hydrol 23.0 45 0.00098 32.2 1.4 57 218-277 27-84 (295)
282 PF01873 eIF-5_eIF-2B: Domain 22.8 50 0.0011 27.8 1.5 37 178-216 85-124 (125)
283 PRK12366 replication factor A; 22.7 1.1E+02 0.0023 32.8 4.3 40 186-230 532-571 (637)
284 PRK13264 3-hydroxyanthranilate 22.4 48 0.0011 29.7 1.4 32 187-220 121-171 (177)
285 PF11290 DUF3090: Protein of u 22.3 92 0.002 27.8 3.1 26 171-198 141-166 (171)
286 PF13408 Zn_ribbon_recom: Reco 22.1 34 0.00074 23.7 0.3 15 185-199 4-18 (58)
287 COG1885 Uncharacterized protei 21.5 45 0.00098 27.4 0.9 14 184-197 47-60 (115)
288 KOG3507 DNA-directed RNA polym 21.1 45 0.00098 24.6 0.8 26 188-216 22-47 (62)
289 PRK12336 translation initiatio 21.0 66 0.0014 29.2 2.0 38 177-216 89-129 (201)
290 COG2995 PqiA Uncharacterized p 20.3 50 0.0011 33.2 1.2 16 186-201 38-53 (418)
No 1
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.7e-51 Score=377.59 Aligned_cols=221 Identities=40% Similarity=0.695 Sum_probs=187.3
Q ss_pred CeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 020612 64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG 143 (323)
Q Consensus 64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~~~~~~ 143 (323)
.+++++|+++++++..++. | ++ .... ..+......++|.. ++.++|++.+......
T Consensus 19 ~~~~~~~~~~~l~l~~~~~---p------~~--~~~~------~~l~~~~~~~~~~~--~~~~v~~~~l~~~~~~----- 74 (279)
T COG2816 19 STLWLVFSEGKLLLKDGEL---P------FG--AAEN------LDLVGEALLGIGEW--GGEPVFAVWLVEEIEL----- 74 (279)
T ss_pred cceEEEEcCCcEEEecCCC---c------cc--hhhc------CCchHHHhhhcccc--CCccceeeeccccccc-----
Confidence 7999999999999965432 1 11 1111 01123445677764 6778887755443321
Q ss_pred ccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccE
Q 020612 144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV 223 (323)
Q Consensus 144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv 223 (323)
+.+..+++||+++..+ +...+.++++|.+|++|+++||||++||++|...++|++++|+ .|+..+|||++|+
T Consensus 75 ~~~~~~~~lR~l~~~~------~~~~~~~~~~a~~l~~w~~~~RFCg~CG~~~~~~~~g~~~~C~--~cg~~~fPR~dP~ 146 (279)
T COG2816 75 PEPFELVDLRSLLTEL------DEGLFGLAARAVQLLEWYRSHRFCGRCGTKTYPREGGWARVCP--KCGHEHFPRIDPC 146 (279)
T ss_pred CCccceeeHHHHhccC------CHHHHHHHHHHHHHHHHHhhCcCCCCCCCcCccccCceeeeCC--CCCCccCCCCCCe
Confidence 3477899999998654 3467899999999999999999999999999999999999998 6999999999999
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~ 303 (323)
|||+|++ ++++||.++.++++|+|++.+||||+|||+|+|++|||+||+||+|++++|++|||||| |+++|+|
T Consensus 147 vIv~v~~--~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPf-----P~SLMig 219 (279)
T COG2816 147 VIVAVIR--GDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPF-----PHSLMLG 219 (279)
T ss_pred EEEEEec--CCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCC-----chhhhhh
Confidence 9999998 46699999998889999999999999999999999999999999999999999999995 9999999
Q ss_pred EEEEeeccCCCCCcccccCC
Q 020612 304 FYAYAKSFEINVDKEELEGT 323 (323)
Q Consensus 304 f~a~~~~~~i~~d~~EiedA 323 (323)
|++.+.+++|++|+.||+||
T Consensus 220 f~aey~sgeI~~d~~Eleda 239 (279)
T COG2816 220 FMAEYDSGEITPDEGELEDA 239 (279)
T ss_pred heeeeccccccCCcchhhhc
Confidence 99999999999999999986
No 2
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=100.00 E-value=3.1e-41 Score=315.07 Aligned_cols=216 Identities=30% Similarity=0.503 Sum_probs=179.3
Q ss_pred CeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 020612 64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG 143 (323)
Q Consensus 64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~~~~~~ 143 (323)
...+++|.+++.++... . +...+.+.. .......+|||.. ++.++|+++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~---------~~~~~~~~~lg~~--~~~~~~~~~~~~~-------- 64 (256)
T PRK00241 12 AGWWVVSHEQQLWLPDG-E-------LPFGAAANL---------DLPGLRALQIGEW--QGEPVWLVRQDPL-------- 64 (256)
T ss_pred CcEEEEEeCCeEEEccC-C-------CCCcccccc---------CCCccceEEEEee--CCEEEEEEEcCcc--------
Confidence 46688898988887431 1 111221111 0123567999986 6789999987632
Q ss_pred ccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccE
Q 020612 144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV 223 (323)
Q Consensus 144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv 223 (323)
.+..|.+||++ ..+ ++.+++++++|++|++||++|+|||+||+++....+++++.|+ .|+..+||+++|+
T Consensus 65 -~~~~~~~lr~~-~~~------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~c~~~~yp~~~pa 134 (256)
T PRK00241 65 -RGHEMGSLRQL-LDL------DDGLFQLLGRAVQLAEFYRSHRFCGYCGHPMHPSKTEWAMLCP--HCRERYYPRIAPC 134 (256)
T ss_pred -ccccchhhhhh-ccC------CHHHHHHHHHHHHHHHHhhcCccccccCCCCeecCCceeEECC--CCCCEECCCCCCE
Confidence 25678999998 333 3467899999999999999999999999999999999999998 7999999999999
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~ 303 (323)
|+++|.+ +++|||+|+.+++.|.|++|||+||+|||+++||+||++|||||++..++|+++++|++ ++++|++
T Consensus 135 Viv~V~~--~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~-----p~~lm~~ 207 (256)
T PRK00241 135 IIVAVRR--GDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPF-----PHSLMLG 207 (256)
T ss_pred EEEEEEe--CCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecC-----CCeEEEE
Confidence 9998876 58999999988778999999999999999999999999999999999999999999985 6789999
Q ss_pred EEEEeeccCCCCCcccccCC
Q 020612 304 FYAYAKSFEINVDKEELEGT 323 (323)
Q Consensus 304 f~a~~~~~~i~~d~~EiedA 323 (323)
|.+.+..+++.++++|+.++
T Consensus 208 f~a~~~~~~~~~~~~Ei~~a 227 (256)
T PRK00241 208 FHADYDSGEIVFDPKEIADA 227 (256)
T ss_pred EEEEecCCcccCCcccEEEE
Confidence 99998877888888888653
No 3
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-41 Score=315.39 Aligned_cols=167 Identities=54% Similarity=0.961 Sum_probs=153.1
Q ss_pred chhhhHHHhhhcchhhhhhhhHH-HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCC--CcccCCcccEE
Q 020612 148 CFVELRTVMVATDWADQRAMADL-AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCK--KRIYPRVDPVV 224 (323)
Q Consensus 148 ~~~~lr~~~~~~~~~~~~~~~~~-~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~--~~~ypr~~pvV 224 (323)
.|+++|..+. +... ..++ +++++|++++.||++++|||.||++|.+.++|.+.+|.+..|. .+.|||++|+|
T Consensus 116 ~F~~~r~~~~-~~~~----~~d~~~~~a~ars~l~W~skykFCp~CG~~tkp~e~g~k~~Cs~~~C~~~n~~yPr~dPvV 190 (345)
T KOG3084|consen 116 SFVPLRMSMS-LPGS----DEDARSLTAVARSLLDWVSKYKFCPGCGSPTKPEEAGTKLQCSDETCPSCNVIYPRTDPVV 190 (345)
T ss_pred eeccchhhcc-CCCC----hhhhhcHHHHHHHHHHHHHHhccCcccCCCcccccCCccceeecccCCcCCeeccCCCCeE
Confidence 8999999984 2111 1233 8999999999999999999999999999999999999988898 89999999999
Q ss_pred EEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEE
Q 020612 225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF 304 (323)
Q Consensus 225 ivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f 304 (323)
|++|+++++.++||.|++++++|+|++++||+|+|||+||||+||++|||||+|+.+.|+.+||||. +|+++|+||
T Consensus 191 Im~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~----~p~SLMIgc 266 (345)
T KOG3084|consen 191 IMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPL----MPQSLMIGC 266 (345)
T ss_pred EEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCC----CchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 588999999
Q ss_pred EEEeec-cCCCCCcc-cccCC
Q 020612 305 YAYAKS-FEINVDKE-ELEGT 323 (323)
Q Consensus 305 ~a~~~~-~~i~~d~~-EiedA 323 (323)
++.+.. +.|.+|.+ |++||
T Consensus 267 ~ala~~~~~I~vd~dlEleDa 287 (345)
T KOG3084|consen 267 LALAKLNGKISVDKDLELEDA 287 (345)
T ss_pred HHHHhhCCccccCcchhhhhc
Confidence 997775 88999988 99986
No 4
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.78 E-value=2.1e-18 Score=144.36 Aligned_cols=101 Identities=27% Similarity=0.360 Sum_probs=82.6
Q ss_pred ccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE
Q 020612 207 CSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT 285 (323)
Q Consensus 207 C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g 285 (323)
|+ .|+.++|++...++.++|++ +++|||+||.. ...|.|++|||+||+||++++|++||++||||+++....+++
T Consensus 1 c~--~~~~~~~~~~~~~v~~ii~~--~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~ 76 (130)
T cd04511 1 CP--DCGYIHYQNPKIIVGCVPEW--EGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYA 76 (130)
T ss_pred CC--CCccccCCCCcEEEEEEEec--CCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEE
Confidence 65 89999999888777777776 48999999875 346899999999999999999999999999999997777777
Q ss_pred EeecCCCCCCCCeeEEEEEEEEeeccCCCCC
Q 020612 286 SQPWPVGPNSMPCQLMVGFYAYAKSFEINVD 316 (323)
Q Consensus 286 s~~~~~~~~~~~~~lmi~f~a~~~~~~i~~d 316 (323)
.+.++. .+.+++.|.+....+.+..+
T Consensus 77 ~~~~~~-----~~~~~~~f~~~~~~~~~~~~ 102 (130)
T cd04511 77 VYSVPH-----ISQVYMFYRARLLDLDFAPG 102 (130)
T ss_pred EEecCC-----ceEEEEEEEEEEcCCcccCC
Confidence 776552 45688889998876555443
No 5
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.74 E-value=1e-17 Score=140.97 Aligned_cols=95 Identities=63% Similarity=0.975 Sum_probs=79.8
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEE
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM 301 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lm 301 (323)
|+|++++++. ++++||+||++++.|.|++|||+++.|||+++||+||++||||+++..+.++++.+|.+ +..++
T Consensus 1 ~~v~i~l~~~-~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~-----~~~~~ 74 (131)
T cd03429 1 PAVIVLVIDG-GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF-----PSSLM 74 (131)
T ss_pred CeEEEEEEeC-CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC-----CceEE
Confidence 5777888775 48999999987668999999999999999999999999999999999999998877654 35677
Q ss_pred EEEEEEeeccCCCCCcccccC
Q 020612 302 VGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 302 i~f~a~~~~~~i~~d~~Eied 322 (323)
++|++....+++..+++|+.+
T Consensus 75 ~~f~~~~~~~~~~~~~~E~~~ 95 (131)
T cd03429 75 LGFTAEADSGEIVVDDDELED 95 (131)
T ss_pred EEEEEEEcCCcccCCchhhhc
Confidence 888888776666667677654
No 6
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.68 E-value=3.8e-16 Score=134.40 Aligned_cols=97 Identities=31% Similarity=0.345 Sum_probs=75.8
Q ss_pred CcccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG 292 (323)
Q Consensus 214 ~~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~ 292 (323)
...|+.+..+|.+++.. +++|||+||.. +..|.|++|||+||.|||+++||+||++|||||++..+++++.+..+..
T Consensus 3 ~~~~~~p~~~v~~~i~~--~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~r 80 (145)
T COG1051 3 AMGYRTPLVAVGALIVR--NGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGR 80 (145)
T ss_pred cccCCCcceeeeEEEEe--CCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCC
Confidence 45677777777777776 45999999986 4578999999999999999999999999999999999999998877754
Q ss_pred CCCCCeeEEEEEEEEeeccCC
Q 020612 293 PNSMPCQLMVGFYAYAKSFEI 313 (323)
Q Consensus 293 ~~~~~~~lmi~f~a~~~~~~i 313 (323)
... .+++.+.|++....+++
T Consensus 81 d~r-~~~v~~~~~~~~~~g~~ 100 (145)
T COG1051 81 DPR-GHHVSFLFFAAEPEGEL 100 (145)
T ss_pred CCc-eeEEEEEEEEEecCCCc
Confidence 322 34566666665544433
No 7
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=4.7e-16 Score=128.74 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=74.3
Q ss_pred cEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l 300 (323)
+.+.++|++. +++|||++|.+ ..+|.|.+|||++|+|||+++||+||++||||+++....+++...+.+.... .+.+
T Consensus 3 ~~~~~~i~~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~ 80 (125)
T cd04679 3 VGCGAAILRD-DGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPP-QHWV 80 (125)
T ss_pred eEEEEEEECC-CCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCC-CeEE
Confidence 4566677775 48999999875 3468999999999999999999999999999999988888887665443222 3567
Q ss_pred EEEEEEEeeccCCC-CCcccccC
Q 020612 301 MVGFYAYAKSFEIN-VDKEELEG 322 (323)
Q Consensus 301 mi~f~a~~~~~~i~-~d~~Eied 322 (323)
++.|.+....+... .+++|+.+
T Consensus 81 ~~~f~~~~~~~~~~~~~~~E~~~ 103 (125)
T cd04679 81 APVYLAENFSGEPRLMEPDKLLE 103 (125)
T ss_pred EEEEEEeecCCccccCCCccccE
Confidence 77788776655433 34456544
No 8
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.67 E-value=4.9e-16 Score=127.88 Aligned_cols=88 Identities=27% Similarity=0.223 Sum_probs=68.6
Q ss_pred EEEEEEEeCCCCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC---Ce
Q 020612 223 VVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM---PC 298 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~---~~ 298 (323)
++.++|++ +++|||+|+.+. .+|.|.+|||+||+|||+++|++||++||||+++..+.+++...+.+..... .+
T Consensus 2 ~~~~ii~~--~~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04684 2 GAYAVIPR--DGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAH 79 (128)
T ss_pred eeEEEEEe--CCEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeecc
Confidence 56677776 389999999863 4689999999999999999999999999999999888888876554322211 24
Q ss_pred eEEEEEEEEeeccC
Q 020612 299 QLMVGFYAYAKSFE 312 (323)
Q Consensus 299 ~lmi~f~a~~~~~~ 312 (323)
.+.+.|.+....+.
T Consensus 80 ~~~~~f~~~~~~~~ 93 (128)
T cd04684 80 HLCVFYDARVVGGA 93 (128)
T ss_pred EEEEEEEEEEecCc
Confidence 56677777776554
No 9
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.66 E-value=6.8e-16 Score=132.15 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=71.5
Q ss_pred EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCC-----CC
Q 020612 223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVG-----PN 294 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v--~~~gs~~~~~~-----~~ 294 (323)
+|.++|++. +++|||+||.+ +.+|+|.+|||+||+|||+++|++||++||||+++... ++++.....+. ..
T Consensus 14 ~v~~vI~~~-~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~ 92 (144)
T cd03430 14 SIDLIVENE-DGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDD 92 (144)
T ss_pred EEEEEEEeC-CCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccCC
Confidence 566666764 58999999875 45789999999999999999999999999999988655 67666432211 11
Q ss_pred CCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 295 SMPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 295 ~~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
...+.+.+.|.+....+.+...++|+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 120 (144)
T cd03430 93 FSTHYVVLGYVLKLSSNELLLPDEQHSE 120 (144)
T ss_pred CccEEEEEEEEEEEcCCcccCCchhccE
Confidence 1124567777777666655555556543
No 10
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1e-15 Score=125.50 Aligned_cols=95 Identities=23% Similarity=0.337 Sum_probs=68.8
Q ss_pred EEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCCCe
Q 020612 223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSMPC 298 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~~~~~~~~~ 298 (323)
+|.++|++ +++|||+||.+ ..+|.|++|||+|++|||+++|++||++||||+++. .+.+++.+.+.... ..+
T Consensus 2 ~v~~vi~~--~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~--~~~ 77 (120)
T cd04683 2 AVYVLLRR--DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTED--IES 77 (120)
T ss_pred cEEEEEEE--CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCC--Cce
Confidence 45666665 48999999875 347899999999999999999999999999999986 67788776544322 134
Q ss_pred eEEEEEEEEeeccCCC-CCccccc
Q 020612 299 QLMVGFYAYAKSFEIN-VDKEELE 321 (323)
Q Consensus 299 ~lmi~f~a~~~~~~i~-~d~~Eie 321 (323)
.+++.|.+....+... .+++|+.
T Consensus 78 ~~~~~f~~~~~~~~~~~~~~~e~~ 101 (120)
T cd04683 78 RIGLFFTVRRWSGEPRNCEPDKCA 101 (120)
T ss_pred EEEEEEEEEeecCccccCCCCcEe
Confidence 5666666665444433 3445544
No 11
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=8e-16 Score=127.84 Aligned_cols=99 Identities=29% Similarity=0.374 Sum_probs=72.6
Q ss_pred EEEEEEEeCCCCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-eeE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQL 300 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~-~~l 300 (323)
+|.++|++. ++++||++|... .+|.|.+|||+++.|||+++||.||++||||+++..++++++.++.+...+.. ..+
T Consensus 3 av~~~i~~~-~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd04681 3 AVGVLILNE-DGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL 81 (130)
T ss_pred eEEEEEEcC-CCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence 566777775 479999998753 46899999999999999999999999999999999899888766543222222 234
Q ss_pred EEEEEEEeeccCCCCCcccccC
Q 020612 301 MVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 301 mi~f~a~~~~~~i~~d~~Eied 322 (323)
.+.|.+.........+.+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~e~~~ 103 (130)
T cd04681 82 DLFFVCQVDDKPIVKAPDDVAE 103 (130)
T ss_pred EEEEEEEeCCCCCcCChHHhhe
Confidence 4456666655445555556543
No 12
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.65 E-value=1.5e-15 Score=129.57 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=78.9
Q ss_pred CcccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG 292 (323)
Q Consensus 214 ~~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~ 292 (323)
+-+||++.+++.++|++. ++++||+++.. ..++.|++|||+|++|||+++||+||++||||+++..+++++.+.+.+.
T Consensus 6 ~~~~~~~~~av~~vv~~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~ 84 (142)
T cd04700 6 RHHVEVEARAAGAVILNE-RNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFD 84 (142)
T ss_pred ccCcceeeeeEEEEEEeC-CCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcC
Confidence 468999999999999985 47899988764 3468999999999999999999999999999999988888887655432
Q ss_pred CCCCCeeEEEEEEEEeeccCCCC-CcccccC
Q 020612 293 PNSMPCQLMVGFYAYAKSFEINV-DKEELEG 322 (323)
Q Consensus 293 ~~~~~~~lmi~f~a~~~~~~i~~-d~~Eied 322 (323)
. + ...+.+.|++........+ ..+|+.+
T Consensus 85 ~-~-~~~~~~~f~~~~~~~~~~~~~~~E~~~ 113 (142)
T cd04700 85 D-G-VLVLRHVWLAEPEGQTLAPKFTDEIAE 113 (142)
T ss_pred C-C-cEEEEEEEEEEecCCccccCCCCCEEE
Confidence 1 1 2234456777664433222 2345543
No 13
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2e-15 Score=124.33 Aligned_cols=86 Identities=34% Similarity=0.351 Sum_probs=65.1
Q ss_pred EEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCee
Q 020612 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ 299 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~ 299 (323)
+|+++|++ +++|||+||.+ +.+|.|++|||+||+|||+++|++||++||||+++..+.+++.+.++.. ...
T Consensus 2 ~v~~vi~~--~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~----~~~ 75 (117)
T cd04691 2 GVVGVLFS--DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS----ELQ 75 (117)
T ss_pred eEEEEEEE--CCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC----CeE
Confidence 34555555 38999999875 2578999999999999999999999999999999888888888765532 234
Q ss_pred EEEEEEEEeeccCCC
Q 020612 300 LMVGFYAYAKSFEIN 314 (323)
Q Consensus 300 lmi~f~a~~~~~~i~ 314 (323)
.+..|.+....+.+.
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (117)
T cd04691 76 LLHYYVVTFWQGEIP 90 (117)
T ss_pred EEEEEEEEEecCCCC
Confidence 455566655555443
No 14
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.65 E-value=1.6e-15 Score=128.40 Aligned_cols=98 Identities=28% Similarity=0.324 Sum_probs=68.2
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE-----EeecCCCCCC--
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT-----SQPWPVGPNS-- 295 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g-----s~~~~~~~~~-- 295 (323)
.+.++|++.++++|||+||.+ .|.|.+|||+||+|||+++||+||++||||+++..+...+ .+...+....
T Consensus 4 ~~~~~v~~~~~~~vLLv~r~~--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T cd03674 4 TASAFVVNPDRGKVLLTHHRK--LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRG 81 (138)
T ss_pred EEEEEEEeCCCCeEEEEEEcC--CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCC
Confidence 455666775448999999876 5899999999999999999999999999999887666543 1222121111
Q ss_pred --CCeeEEEEEEEEeeccCCCC-CcccccC
Q 020612 296 --MPCQLMVGFYAYAKSFEINV-DKEELEG 322 (323)
Q Consensus 296 --~~~~lmi~f~a~~~~~~i~~-d~~Eied 322 (323)
...++++.|++....+...+ +.+|+.+
T Consensus 82 ~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~ 111 (138)
T cd03674 82 VPGHLHLDLRFLAVAPADDVAPPKSDESDA 111 (138)
T ss_pred CCCcEEEEEEEEEEccCccccCCCCCcccc
Confidence 12345567888766555543 5566654
No 15
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=1.1e-15 Score=124.87 Aligned_cols=94 Identities=27% Similarity=0.292 Sum_probs=72.0
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec-cEEEEEEeecCCCCCCCCeeEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG-EVVYHTSQPWPVGPNSMPCQLM 301 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~-~v~~~gs~~~~~~~~~~~~~lm 301 (323)
++.++|++. ++++||+||.. .+.|.+|||++++|||+++||+||++||||+.+. ...+++.+.+.+.. ....+
T Consensus 2 ~~~~~i~~~-~~~vLL~~r~~--~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~---~~~~~ 75 (120)
T cd04680 2 GARAVVTDA-DGRVLLVRHTY--GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASG---SWDHV 75 (120)
T ss_pred ceEEEEECC-CCeEEEEEECC--CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCC---CceEE
Confidence 466777775 47999999875 3489999999999999999999999999999998 88888877655422 23566
Q ss_pred EEEEEEeeccCCCCCcccccC
Q 020612 302 VGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 302 i~f~a~~~~~~i~~d~~Eied 322 (323)
+.|.+.........+.+|+.+
T Consensus 76 ~~f~~~~~~~~~~~~~~E~~~ 96 (120)
T cd04680 76 IVFRARADTQPVIRPSHEISE 96 (120)
T ss_pred EEEEecccCCCccCCcccEEE
Confidence 778877665554455566543
No 16
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.64 E-value=2e-15 Score=126.22 Aligned_cols=95 Identities=28% Similarity=0.277 Sum_probs=69.1
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~ 303 (323)
|.++|.+ ++++||+||.+..++.|.+|||+|++|||+++||+||++||||+++....+++.+.+...... ...+++.
T Consensus 3 v~~ii~~--~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (134)
T cd03675 3 VAAVVER--DGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSD-TTYLRFA 79 (134)
T ss_pred EEEEEEE--CCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCC-eeEEEEE
Confidence 3444444 589999999876678999999999999999999999999999999988888777665443212 2345567
Q ss_pred EEEEeeccCCC-CCccccc
Q 020612 304 FYAYAKSFEIN-VDKEELE 321 (323)
Q Consensus 304 f~a~~~~~~i~-~d~~Eie 321 (323)
|.+.+...... ..++|+.
T Consensus 80 f~~~~~~~~~~~~~~~e~~ 98 (134)
T cd03675 80 FAAELLEHLPDQPLDSGIV 98 (134)
T ss_pred EEEEECCCCCCCCCCCCce
Confidence 77776654332 2234544
No 17
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.2e-15 Score=124.80 Aligned_cols=93 Identities=27% Similarity=0.436 Sum_probs=68.6
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC--CCCCee
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP--NSMPCQ 299 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~--~~~~~~ 299 (323)
++|.++|++. +++|||+|+.+ .+|.|++|||++++|||+++||+||++||||+++..+.+++...+.+.. ....+.
T Consensus 3 ~~v~~~i~~~-~~~iLL~r~~~-~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04696 3 VTVGALIYAP-DGRILLVRTTK-WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHF 80 (125)
T ss_pred cEEEEEEECC-CCCEEEEEccC-CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEE
Confidence 4566777775 57999998764 4689999999999999999999999999999998877776653332211 122456
Q ss_pred EEEEEEEEeeccCCCCC
Q 020612 300 LMVGFYAYAKSFEINVD 316 (323)
Q Consensus 300 lmi~f~a~~~~~~i~~d 316 (323)
+++.|++......+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (125)
T cd04696 81 VLFDFFARTDGTEVTPN 97 (125)
T ss_pred EEEEEEEEecCCcccCC
Confidence 67778877655555544
No 18
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.4e-15 Score=125.47 Aligned_cols=85 Identities=26% Similarity=0.407 Sum_probs=67.2
Q ss_pred EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM 301 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lm 301 (323)
++.+++++. +++|||+|+.+ ..++.|++|||+||.|||+++|++||++||||+++...++++..... .+.++
T Consensus 2 ~~~~vv~~~-~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~------~~~~~ 74 (123)
T cd04671 2 IVAAVILNN-QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG------GSWFR 74 (123)
T ss_pred EEEEEEEcC-CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC------CeEEE
Confidence 455666664 58999999875 34789999999999999999999999999999999888877765332 34677
Q ss_pred EEEEEEeeccCCC
Q 020612 302 VGFYAYAKSFEIN 314 (323)
Q Consensus 302 i~f~a~~~~~~i~ 314 (323)
+.|.+...++.+.
T Consensus 75 ~~f~a~~~~g~~~ 87 (123)
T cd04671 75 FVFTGNITGGDLK 87 (123)
T ss_pred EEEEEEEeCCeEc
Confidence 8888877665544
No 19
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=2.4e-15 Score=122.93 Aligned_cols=95 Identities=27% Similarity=0.251 Sum_probs=69.0
Q ss_pred EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC---CCCe
Q 020612 223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN---SMPC 298 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~---~~~~ 298 (323)
+++++|++ +++|||+||.+ ..++.|.+|||++++|||+++||+||++||||+++....+++...+.+... ...+
T Consensus 2 ~v~~ii~~--~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04673 2 AVGAVVFR--GGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFH 79 (122)
T ss_pred cEEEEEEE--CCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceE
Confidence 45566666 47999999875 346899999999999999999999999999999988777777655433211 1134
Q ss_pred eEEEEEEEEeeccCCCCCcccc
Q 020612 299 QLMVGFYAYAKSFEINVDKEEL 320 (323)
Q Consensus 299 ~lmi~f~a~~~~~~i~~d~~Ei 320 (323)
.+++.|.+....+++. +.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~E~ 100 (122)
T cd04673 80 YVLIDFLCRYLGGEPV-AGDDA 100 (122)
T ss_pred EEEEEEEEEeCCCccc-CCccc
Confidence 5666777776655543 33454
No 20
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.63 E-value=2.4e-15 Score=131.38 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=70.7
Q ss_pred EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCC--C--C
Q 020612 223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGP--N--S 295 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~~~~--~--~ 295 (323)
+|.++|++. .++|||+||.. ..+|.|++|||+||+|||+++|++||++|||||++. ..++++...+.+.. + .
T Consensus 19 ~v~~vI~~~-~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
T PRK15434 19 SLDFIVENS-RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTD 97 (159)
T ss_pred EEEEEEECC-CCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCCCc
Confidence 555666653 58999999874 446899999999999999999999999999999863 34555543222211 1 1
Q ss_pred -CCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 296 -MPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 296 -~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
..+.+++.|.+....+++.++++|..+
T Consensus 98 ~~~~~i~~~f~~~~~~g~~~~~~~E~~~ 125 (159)
T PRK15434 98 FTTHYVVLGFRLRVAEEDLLLPDEQHDD 125 (159)
T ss_pred cceEEEEEEEEEEecCCcccCChHHeeE
Confidence 124677778887777777766656543
No 21
>PLN02325 nudix hydrolase
Probab=99.63 E-value=3.9e-15 Score=127.63 Aligned_cols=94 Identities=24% Similarity=0.266 Sum_probs=70.7
Q ss_pred cccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP 293 (323)
Q Consensus 215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~ 293 (323)
..||+...++.++|++ +++|||+||.. ...|.|.+|||+||.|||+++||+||++||||+++...++++.....+..
T Consensus 3 ~~~~~p~~~v~~vi~~--~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~ 80 (144)
T PLN02325 3 TGEPIPRVAVVVFLLK--GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE 80 (144)
T ss_pred CCCCCCeEEEEEEEEc--CCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence 3467777777777776 47999999875 34679999999999999999999999999999999988888876544322
Q ss_pred CCC-CeeEEEEEEEEeec
Q 020612 294 NSM-PCQLMVGFYAYAKS 310 (323)
Q Consensus 294 ~~~-~~~lmi~f~a~~~~ 310 (323)
... .+.+.+.|.+....
T Consensus 81 ~~~~~~~i~~~f~~~~~~ 98 (144)
T PLN02325 81 EPKPSHYVTVFMRAVLAD 98 (144)
T ss_pred CCCCcEEEEEEEEEEECC
Confidence 211 23455556665543
No 22
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=2.7e-15 Score=124.68 Aligned_cols=67 Identities=36% Similarity=0.480 Sum_probs=57.1
Q ss_pred CCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287 (323)
Q Consensus 218 pr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~ 287 (323)
|.+.+++.+++++. ++++||++|.. .+.|++|||+|++|||+++||+||++||||+++....+++.+
T Consensus 4 ~~~~~~~~~~v~~~-~~~vLL~~r~~--~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~ 70 (132)
T cd04677 4 PLILVGAGVILLNE-QGEVLLQKRSD--TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVY 70 (132)
T ss_pred cccccceEEEEEeC-CCCEEEEEecC--CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEe
Confidence 44567788888875 47999998875 378999999999999999999999999999999887777654
No 23
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.62 E-value=2.5e-15 Score=130.29 Aligned_cols=98 Identities=21% Similarity=0.306 Sum_probs=73.5
Q ss_pred cEEEEEEEeCC-CCeEEEEeeccC---CCCcccceeeecCCC-CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612 222 PVVIMLVIDRE-NDRVLLSRQSRF---VPRMWSCIAGFIEPG-ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM 296 (323)
Q Consensus 222 pvVivlV~~~~-~~riLL~rr~~~---~~g~w~lPgG~VE~G-Es~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~ 296 (323)
.+|++++++.+ +++|||+||... .+|.|++|||+||+| ||+++||+||++||||+++..+.+++.........
T Consensus 3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~-- 80 (157)
T cd03426 3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRS-- 80 (157)
T ss_pred eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccC--
Confidence 46677777654 369999999853 578999999999999 99999999999999999999899888765433222
Q ss_pred CeeEEEEEEEEeec-cCCCCCcccccC
Q 020612 297 PCQLMVGFYAYAKS-FEINVDKEELEG 322 (323)
Q Consensus 297 ~~~lmi~f~a~~~~-~~i~~d~~Eied 322 (323)
...+..|++.... ..+.++++|+.+
T Consensus 81 -~~~v~~~~~~~~~~~~~~~~~~E~~~ 106 (157)
T cd03426 81 -GFVVTPVVGLVPPPLPLVLNPDEVAE 106 (157)
T ss_pred -CCEEEEEEEEECCCCCCCCCHHHhhe
Confidence 2344555665544 356677777764
No 24
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.62 E-value=2.9e-15 Score=123.78 Aligned_cols=97 Identities=26% Similarity=0.209 Sum_probs=70.4
Q ss_pred EEEEEEEeCC--CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC-CCCee
Q 020612 223 VVIMLVIDRE--NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN-SMPCQ 299 (323)
Q Consensus 223 vVivlV~~~~--~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~-~~~~~ 299 (323)
++.++|++.+ +++|||+|+.+ .+.|.+|||++++|||+++||+||++||||+++..+.+++.+.|++... .....
T Consensus 3 ~a~~ii~~~~~~~~~vLl~~~~~--~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPR--GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHK 80 (131)
T ss_pred eEEEEEEEccCCCeEEEEEEcCC--CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcce
Confidence 3445555542 27999999976 3799999999999999999999999999999998888888776655321 12334
Q ss_pred EEEEEEEEeeccCCCC-Cccccc
Q 020612 300 LMVGFYAYAKSFEINV-DKEELE 321 (323)
Q Consensus 300 lmi~f~a~~~~~~i~~-d~~Eie 321 (323)
.+..|.+.....++.. +++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~E~~ 103 (131)
T cd03673 81 TVHWWLMRALGGEFTPQPDEEVD 103 (131)
T ss_pred EEEEEEEEEcCCCcccCCCCcEE
Confidence 5556666665555554 455554
No 25
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=4.9e-15 Score=123.09 Aligned_cols=98 Identities=26% Similarity=0.296 Sum_probs=72.2
Q ss_pred cEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l 300 (323)
.++.++|++. +++|||+||.. +..+.|.+|||+|++|||+++|++||++||||+++..+++++.....+... ..+.+
T Consensus 3 ~~v~~ii~~~-~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~-~~~~~ 80 (129)
T cd04678 3 VGVGVFVLNP-KGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEE-GKHYV 80 (129)
T ss_pred eEEEEEEECC-CCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCC-CcEEE
Confidence 3566777775 48999999875 357899999999999999999999999999999998888887654433222 24567
Q ss_pred EEEEEEEeeccCCCC---Cccccc
Q 020612 301 MVGFYAYAKSFEINV---DKEELE 321 (323)
Q Consensus 301 mi~f~a~~~~~~i~~---d~~Eie 321 (323)
.+.|.+......... +.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~e~~ 104 (129)
T cd04678 81 TIFVKAEVDDGEAEPNKMEPEKCE 104 (129)
T ss_pred EEEEEEEeCCCCcccCCCCCceeC
Confidence 777777766544332 344544
No 26
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=5.6e-15 Score=122.58 Aligned_cols=67 Identities=28% Similarity=0.403 Sum_probs=55.8
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~ 289 (323)
+.+.++|++. +++|||+|++...++.|.+|||++++|||+++||+||++||||+++....+++...+
T Consensus 3 ~~~~~~v~~~-~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~ 69 (127)
T cd04670 3 VGVGGLVLNE-KNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHA 69 (127)
T ss_pred eEEEEEEEcC-CCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEec
Confidence 4567777775 489999987654578999999999999999999999999999999877777665433
No 27
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.60 E-value=5.8e-15 Score=123.90 Aligned_cols=97 Identities=34% Similarity=0.289 Sum_probs=72.4
Q ss_pred cEEEEEEEeCCCCeEEEEeeccC--CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCee
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ 299 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~ 299 (323)
.+|.++++++ ++++||+++.+. .++.|++|||+||.||++++||+||++||||+++..+.+++.+.+..+ ....
T Consensus 3 ~~v~v~~~~~-~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~---~~~~ 78 (137)
T cd03424 3 DAVAVLPYDD-DGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPG---FSDE 78 (137)
T ss_pred CEEEEEEEcC-CCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCc---ccCc
Confidence 4667777776 489999988653 356899999999999999999999999999999988888887654321 2334
Q ss_pred EEEEEEEEeeccC--CCCCcccccC
Q 020612 300 LMVGFYAYAKSFE--INVDKEELEG 322 (323)
Q Consensus 300 lmi~f~a~~~~~~--i~~d~~Eied 322 (323)
.+..|++...... ...++.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~E~~~ 103 (137)
T cd03424 79 RIHLFLAEDLSPGEEGLLDEGEDIE 103 (137)
T ss_pred cEEEEEEEcccccccCCCCCCCeeE
Confidence 5667777665443 3455666653
No 28
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1e-14 Score=120.75 Aligned_cols=83 Identities=25% Similarity=0.250 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~ 303 (323)
+.++|++. +++|||+||.+...+.|++|||+||+|||+++|++||++||||+++.....++.+.++ ....+.
T Consensus 3 ~~~ii~~~-~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~~-------~~~~~~ 74 (121)
T cd04669 3 ASIVIIND-QGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQN-------GRTEHY 74 (121)
T ss_pred eEEEEEeC-CCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEeeC-------CcEEEE
Confidence 44555663 4899999987655679999999999999999999999999999999776777766542 134566
Q ss_pred EEEEeeccCCC
Q 020612 304 FYAYAKSFEIN 314 (323)
Q Consensus 304 f~a~~~~~~i~ 314 (323)
|.+....+.+.
T Consensus 75 f~~~~~~g~~~ 85 (121)
T cd04669 75 FLARVISGKLG 85 (121)
T ss_pred EEEEEECCeec
Confidence 77766655544
No 29
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.59 E-value=1e-14 Score=122.24 Aligned_cols=89 Identities=26% Similarity=0.263 Sum_probs=68.5
Q ss_pred EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM 301 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lm 301 (323)
+..++|.+ +++|||++|.+ ..++.|.+|||+||+|||+++||+||++||||+++..+++++...+..... ....++
T Consensus 3 ~~~~~i~~--~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (137)
T cd03427 3 TTLCFIKD--PDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGE-EERYGV 79 (137)
T ss_pred EEEEEEEE--CCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCC-CcEEEE
Confidence 45666666 48999998875 357899999999999999999999999999999999888888877654322 134566
Q ss_pred EEEEEEeeccCCC
Q 020612 302 VGFYAYAKSFEIN 314 (323)
Q Consensus 302 i~f~a~~~~~~i~ 314 (323)
+.|.+....+.+.
T Consensus 80 ~~f~~~~~~~~~~ 92 (137)
T cd03427 80 FVFLATEFEGEPL 92 (137)
T ss_pred EEEEECCcccccC
Confidence 6677655544443
No 30
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=6.9e-15 Score=121.49 Aligned_cols=95 Identities=26% Similarity=0.287 Sum_probs=65.2
Q ss_pred EEEEEEEeCCCCeEEEEeeccC----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612 223 VVIMLVIDRENDRVLLSRQSRF----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~ 298 (323)
++++++++ +++|||+||.+. .+|.|.+|||+|+.|||+++||+||++||||+++..........+.+. ...
T Consensus 3 v~~~~~~~--~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~---~~~ 77 (122)
T cd04682 3 VALALLIG--DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA---SPP 77 (122)
T ss_pred eEEEEEEc--CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC---CCC
Confidence 34455554 389999999743 478999999999999999999999999999999853332222222221 133
Q ss_pred eEEEEEEEEeeccC-CCCCcccccC
Q 020612 299 QLMVGFYAYAKSFE-INVDKEELEG 322 (323)
Q Consensus 299 ~lmi~f~a~~~~~~-i~~d~~Eied 322 (323)
..++.|.+...... ...+.+|+++
T Consensus 78 ~~~~~f~~~~~~~~~~~~~~~E~~~ 102 (122)
T cd04682 78 GTEHVFVVPLTAREDAILFGDEGQA 102 (122)
T ss_pred ceEEEEEEEEecCCCccccCchhhe
Confidence 46666777666443 4456666654
No 31
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.6e-14 Score=119.55 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=67.1
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC--CCCeeE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN--SMPCQL 300 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~--~~~~~l 300 (323)
.|.++|++ +++|||+++++ .+.|.+|||+|++|||+++||+||++||||+.+....+++......... ...+.+
T Consensus 4 ~v~~~i~~--~~~vLL~~~~~--~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd04672 4 DVRAAIFK--DGKILLVREKS--DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQVY 79 (123)
T ss_pred eEEEEEEE--CCEEEEEEEcC--CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEEE
Confidence 35566666 38999999876 7899999999999999999999999999999986666666554322111 112345
Q ss_pred EEEEEEEeeccCCCCCccccc
Q 020612 301 MVGFYAYAKSFEINVDKEELE 321 (323)
Q Consensus 301 mi~f~a~~~~~~i~~d~~Eie 321 (323)
++.|.+....+.+..+ +|+.
T Consensus 80 ~~~f~~~~~~~~~~~~-~E~~ 99 (123)
T cd04672 80 KLFFLCEILGGEFKPN-IETS 99 (123)
T ss_pred EEEEEEEecCCcccCC-Ccee
Confidence 5667777665555554 4543
No 32
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.8e-14 Score=117.63 Aligned_cols=84 Identities=25% Similarity=0.284 Sum_probs=63.3
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeecc--EEEEEEeecCCCCCCCCeeEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQPWPVGPNSMPCQLM 301 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~--v~~~gs~~~~~~~~~~~~~lm 301 (323)
+.+++++. ++++||+|++. .+.|.+|||++++||++++||+||++||||+++.. +++++.+.++..........+
T Consensus 3 ~~~~v~~~-~~~vLl~~r~~--~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (118)
T cd04690 3 AAALILVR-DGRVLLVRKRG--TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRA 79 (118)
T ss_pred EEEEEEec-CCeEEEEEECC--CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEE
Confidence 44555554 47999998875 57899999999999999999999999999999877 888888766432221123556
Q ss_pred EEEEEEeec
Q 020612 302 VGFYAYAKS 310 (323)
Q Consensus 302 i~f~a~~~~ 310 (323)
+.|.+....
T Consensus 80 ~~f~~~~~~ 88 (118)
T cd04690 80 TVYVAELTG 88 (118)
T ss_pred EEEEEcccC
Confidence 666665544
No 33
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.8e-14 Score=119.80 Aligned_cols=89 Identities=27% Similarity=0.212 Sum_probs=63.8
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC-----CCCC
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG-----PNSM 296 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~-----~~~~ 296 (323)
+.+.++|++ +++|||+|+.+...+.|.+|||+||+|||+++||+||++||||+++...++.....+... ....
T Consensus 2 ~~a~~iv~~--~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04687 2 NSAKAVIIK--NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGH 79 (128)
T ss_pred cEEEEEEEE--CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCc
Confidence 345666665 589999999765567899999999999999999999999999999876554443222111 1112
Q ss_pred CeeEEEEEEEEeeccC
Q 020612 297 PCQLMVGFYAYAKSFE 312 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~~ 312 (323)
.+.+++.|.+....+.
T Consensus 80 ~~~i~~~f~~~~~~~~ 95 (128)
T cd04687 80 FHQVELMFECKIKSGT 95 (128)
T ss_pred eeEEEEEEEEEECCCC
Confidence 4567777777765443
No 34
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.6e-14 Score=120.39 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=70.6
Q ss_pred EEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~ 298 (323)
++.+++++. +++|||++|.. +.+|+|++ |||++++||++++||+||++||||+++..+..++.+.+.... ..
T Consensus 2 ~~~v~i~~~-~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~---~~ 77 (126)
T cd04697 2 ATYIFVFNS-EGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDG---NR 77 (126)
T ss_pred eEEEEEEcC-CCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCC---ce
Confidence 456777776 58999998873 45889999 699999999999999999999999999888888877654321 22
Q ss_pred eEEEEEEEEeeccCCCCCcccccC
Q 020612 299 QLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 299 ~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
.....|.+.. ..++.++++|+.+
T Consensus 78 ~~~~~f~~~~-~~~~~~~~~E~~~ 100 (126)
T cd04697 78 VWGKVFSCVY-DGPLKLQEEEVEE 100 (126)
T ss_pred EEEEEEEEEE-CCCCCCCHhHhhh
Confidence 3344566554 3455566667654
No 35
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.58 E-value=9e-15 Score=125.63 Aligned_cols=58 Identities=29% Similarity=0.541 Sum_probs=51.1
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v 281 (323)
|++.++|++.++++|||+|+.+ .+.|++|||++|+|||+++||+||++||||+++...
T Consensus 2 p~~gaii~~~~~~~vLLvr~~~--~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~ 59 (145)
T cd03672 2 PVYGAIILNEDLDKVLLVKGWK--SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKY 59 (145)
T ss_pred CeeEEEEEeCCCCEEEEEEecC--CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceec
Confidence 6788888886567999999875 458999999999999999999999999999988653
No 36
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.7e-14 Score=119.52 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=64.5
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC-CCeeEEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS-MPCQLMV 302 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~-~~~~lmi 302 (323)
|.++|++ +++|||+|+.+ .+.|.+|||+|++||++++||+||++||||+++...++++.....+...+ ..+.+.+
T Consensus 4 v~~vi~~--~~~vLl~~~~~--~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04688 4 AAAIIIH--NGKLLVQKNPD--ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEF 79 (126)
T ss_pred EEEEEEE--CCEEEEEEeCC--CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEE
Confidence 4455555 36999999875 68999999999999999999999999999999988888776543222221 1345667
Q ss_pred EEEEEeeccCC
Q 020612 303 GFYAYAKSFEI 313 (323)
Q Consensus 303 ~f~a~~~~~~i 313 (323)
.|.+....+..
T Consensus 80 ~f~~~~~~~~~ 90 (126)
T cd04688 80 YYLVTLLDESL 90 (126)
T ss_pred EEEEEeCCCcc
Confidence 77777665544
No 37
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.57 E-value=2e-14 Score=119.51 Aligned_cols=97 Identities=28% Similarity=0.265 Sum_probs=67.1
Q ss_pred EEEEEEeC-CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEee----cCCCCCCCCe
Q 020612 224 VIMLVIDR-ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP----WPVGPNSMPC 298 (323)
Q Consensus 224 VivlV~~~-~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~----~~~~~~~~~~ 298 (323)
|.+++++. ++++|||+||.+..+|.|.+|||++++|||+++||+||++|||||.+..+.++.... +.+...+ .+
T Consensus 4 ~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~ 82 (129)
T cd04664 4 VLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNG-RV 82 (129)
T ss_pred EEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCc-eE
Confidence 44555553 258999999886568899999999999999999999999999999987777666543 1111111 33
Q ss_pred eEEEEEEEEeeccCCCCCccccc
Q 020612 299 QLMVGFYAYAKSFEINVDKEELE 321 (323)
Q Consensus 299 ~lmi~f~a~~~~~~i~~d~~Eie 321 (323)
..++.|.+..........++|+.
T Consensus 83 ~~~~~f~~~~~~~~~~~~~~E~~ 105 (129)
T cd04664 83 WTEHPFAFHLPSDAVVTLDWEHD 105 (129)
T ss_pred EEEeEEEEEcCCCCcccCCcccc
Confidence 45667777765443222334544
No 38
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.57 E-value=2e-14 Score=122.98 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=57.0
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~ 287 (323)
.+++.++|++. +++|||+||.+.. +.|.+|||++|+||++.+||+||++||||+++..+..++..
T Consensus 3 ~~~v~~ii~~~-~~~vLL~~r~~~~-~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~ 67 (147)
T cd03671 3 RPNVGVVLFNE-DGKVFVGRRIDTP-GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEI 67 (147)
T ss_pred CceEEEEEEeC-CCEEEEEEEcCCC-CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEc
Confidence 36788888875 5899999998755 89999999999999999999999999999998887877764
No 39
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=3.6e-14 Score=116.31 Aligned_cols=97 Identities=31% Similarity=0.372 Sum_probs=66.9
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC-----CCCCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-----VGPNS 295 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~-----~~~~~ 295 (323)
.|+|.++|++. ++++||+||.. .|.|.+|||+++.|||+++|++||++||||+++....+++.+..+ +....
T Consensus 2 ~~~v~~ii~~~-~~~vLl~~r~~--~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04676 2 LPGVTAVVRDD-EGRVLLIRRSD--NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD 78 (129)
T ss_pred cceEEEEEECC-CCeEEEEEecC--CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC
Confidence 36677777775 48999999876 389999999999999999999999999999998777665432211 11111
Q ss_pred CCeeEEEEEEEEeeccCCCCCcccc
Q 020612 296 MPCQLMVGFYAYAKSFEINVDKEEL 320 (323)
Q Consensus 296 ~~~~lmi~f~a~~~~~~i~~d~~Ei 320 (323)
..+.+.+.|++....+....+.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~e~ 103 (129)
T cd04676 79 VRQYLDITFRCRVVGGELRVGDDES 103 (129)
T ss_pred cEEEEEEEEEEEeeCCeecCCCCce
Confidence 1245556666665544432333343
No 40
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.56 E-value=2.1e-14 Score=121.56 Aligned_cols=55 Identities=35% Similarity=0.601 Sum_probs=45.9
Q ss_pred EEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec
Q 020612 224 VIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~ 279 (323)
+++.|++. +++|||+||.. ..+|.|++|||+||+|||+++||+||++|||||++.
T Consensus 6 ~~~~ii~~-~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 6 IVCPLIQN-DGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLL 63 (141)
T ss_pred EEEEEEec-CCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCcee
Confidence 34444443 58999999864 357999999999999999999999999999999864
No 41
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=2.4e-14 Score=119.95 Aligned_cols=51 Identities=35% Similarity=0.538 Sum_probs=45.7
Q ss_pred CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEE
Q 020612 232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282 (323)
Q Consensus 232 ~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~ 282 (323)
.+++|||+||....+|.|.+|||+||+|||+++||+||++||||+++..+.
T Consensus 12 ~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~ 62 (131)
T cd04695 12 KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELY 62 (131)
T ss_pred CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccc
Confidence 468999999986567899999999999999999999999999999986553
No 42
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=3e-14 Score=118.31 Aligned_cols=94 Identities=27% Similarity=0.358 Sum_probs=64.9
Q ss_pred EEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCC
Q 020612 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSM 296 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~~~~~~~ 296 (323)
+|.+++++. +++|||+||.. ..+|.|++| ||++++||++ +||+||++||||+++. .+..++.+.+...
T Consensus 2 ~v~v~~~~~-~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~---- 75 (127)
T cd04693 2 VVHVCIFNS-KGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE---- 75 (127)
T ss_pred eEEEEEEeC-CCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC----
Confidence 456677775 58999998874 347899998 8999999999 9999999999999875 4555555543321
Q ss_pred CeeEEEEEEEEeeccCCCCCcccccC
Q 020612 297 PCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
....++.|++......+.++.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~E~~~ 101 (127)
T cd04693 76 GFDDYYLFYADVEIGKLILQKEEVDE 101 (127)
T ss_pred CeEEEEEEEecCcccccccCHHHhhh
Confidence 12233334444444555666667654
No 43
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.53 E-value=6.7e-14 Score=115.77 Aligned_cols=82 Identities=24% Similarity=0.285 Sum_probs=61.1
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC-CCeeEEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS-MPCQLMV 302 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~-~~~~lmi 302 (323)
|.++|++ +++|||+|+.. .+.|.+|||++|+|||+++||+||++||||+++....+++.....+...+ ..+.+++
T Consensus 4 ~~~vi~~--~~~vLlv~~~~--~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (125)
T cd04689 4 ARAIVRA--GNKVLLARVIG--QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINH 79 (125)
T ss_pred EEEEEEe--CCEEEEEEecC--CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEE
Confidence 4445554 58999999864 57899999999999999999999999999999988888876543322211 1334556
Q ss_pred EEEEEee
Q 020612 303 GFYAYAK 309 (323)
Q Consensus 303 ~f~a~~~ 309 (323)
.|.+...
T Consensus 80 ~f~~~~~ 86 (125)
T cd04689 80 IFAVESS 86 (125)
T ss_pred EEEEEcc
Confidence 6666554
No 44
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=6e-14 Score=119.46 Aligned_cols=100 Identities=25% Similarity=0.325 Sum_probs=71.1
Q ss_pred EEEEEEEeCCC--CeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCCC-C
Q 020612 223 VVIMLVIDREN--DRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPVG-P 293 (323)
Q Consensus 223 vVivlV~~~~~--~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~gs~~~~~~-~ 293 (323)
+|.++|++.++ +++||++|.. ..+|.|++ |||+|++|||+++||+||++|||||.+ ..+.+++...+.+. .
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~ 83 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI 83 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence 67788888642 7999999874 45789998 599999999999999999999999976 46777776654432 1
Q ss_pred CC-CCeeEEEEEEEEeec--cCCCCCcccccC
Q 020612 294 NS-MPCQLMVGFYAYAKS--FEINVDKEELEG 322 (323)
Q Consensus 294 ~~-~~~~lmi~f~a~~~~--~~i~~d~~Eied 322 (323)
.. ....+...|.+.... +.+.++++|+.+
T Consensus 84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~ 115 (144)
T cd04692 84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAG 115 (144)
T ss_pred CCCccceEEEEEEEeccCChhhcCCChhHhhe
Confidence 11 122355566665543 455566667643
No 45
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.52 E-value=9e-14 Score=118.67 Aligned_cols=62 Identities=27% Similarity=0.494 Sum_probs=50.7
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEE
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYH 284 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~ 284 (323)
...|.++|++. +++|||+||.+ .++.|++|||++|+|||+++||+||++||||+++ ..+.++
T Consensus 7 ~~~v~~vi~~~-~~~vLl~~r~~-~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 70 (148)
T PRK09438 7 PVSVLVVIYTP-DLGVLMLQRAD-DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLI 70 (148)
T ss_pred ceEEEEEEEeC-CCeEEEEEecC-CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeec
Confidence 44566667765 57899998864 3689999999999999999999999999999988 555443
No 46
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=9.2e-14 Score=113.08 Aligned_cols=78 Identities=32% Similarity=0.357 Sum_probs=59.4
Q ss_pred CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeeccC
Q 020612 233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE 312 (323)
Q Consensus 233 ~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~~ 312 (323)
+++|||+|+.+ |.|++|||+|++||++++||.||++||||+++..+.+++.+... ...++.|.+......
T Consensus 10 ~~~vLlv~r~~---~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~-------~~~~~~f~~~~~~~~ 79 (112)
T cd04667 10 GGRVLLVRKSG---SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDGG-------STRHHVFVASVPPSA 79 (112)
T ss_pred CCEEEEEEcCC---CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeCC-------CEEEEEEEEEcCCcC
Confidence 57999999874 89999999999999999999999999999999888888765421 234556776655443
Q ss_pred CCCCcccc
Q 020612 313 INVDKEEL 320 (323)
Q Consensus 313 i~~d~~Ei 320 (323)
.....+|+
T Consensus 80 ~~~~~~e~ 87 (112)
T cd04667 80 QPKPSNEI 87 (112)
T ss_pred CCCCchhe
Confidence 33233444
No 47
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=2e-13 Score=113.79 Aligned_cols=85 Identities=29% Similarity=0.416 Sum_probs=61.6
Q ss_pred cEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCCCe
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSMPC 298 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~~~~~~~~~ 298 (323)
+++++++... +++||++|.. ...|.|.+|||+||+|||+++|++||++||||+++. .+..+..+.++. ..
T Consensus 5 ~~av~vl~~~--~~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~~~~~~-----~~ 77 (118)
T cd04674 5 PVVVALLPVD--DGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDVRSAPD-----GT 77 (118)
T ss_pred EEEEEEEEEC--CCEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEEecCC-----Ce
Confidence 4555555553 3455555553 446899999999999999999999999999999875 455555555542 45
Q ss_pred eEEEEEEEEeeccCC
Q 020612 299 QLMVGFYAYAKSFEI 313 (323)
Q Consensus 299 ~lmi~f~a~~~~~~i 313 (323)
.+|++|++......+
T Consensus 78 ~~~~~~~~~~~~~~~ 92 (118)
T cd04674 78 LLVFGLLPERRAADL 92 (118)
T ss_pred EEEEEEEeccccccC
Confidence 678888877665554
No 48
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.1e-13 Score=114.06 Aligned_cols=63 Identities=33% Similarity=0.584 Sum_probs=52.4
Q ss_pred cEEEEEEEeCCCCeEEEEeeccC---CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT 285 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~---~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g 285 (323)
+++.++|++. +++|||+||... .+|+|++|||++++|||+++|++||++||||+++....+++
T Consensus 2 ~~v~~vv~~~-~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~ 67 (129)
T cd04699 2 VAVAALIVKD-VGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYP 67 (129)
T ss_pred ceEEEEEECC-CCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeee
Confidence 3566666664 489999998753 37899999999999999999999999999999987777643
No 49
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.51 E-value=1.2e-13 Score=113.81 Aligned_cols=88 Identities=34% Similarity=0.486 Sum_probs=67.3
Q ss_pred cEEEEEEEeCCCCeEEEEeeccC---CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~---~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~ 298 (323)
++|.++|++.+ ++|||+|+.+. .++.|.+|||++++|||+++||+||++||||+++.....++...+.........
T Consensus 3 ~~v~~ii~~~~-~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 3 RAVGVIIFNED-GKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp EEEEEEEEETT-TEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred CEEEEEEEeCC-cEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence 46778888864 59999999874 468999999999999999999999999999999977777776655543322123
Q ss_pred eEEEEEEEEeec
Q 020612 299 QLMVGFYAYAKS 310 (323)
Q Consensus 299 ~lmi~f~a~~~~ 310 (323)
...+.|.+....
T Consensus 82 ~~~~~~~~~~~~ 93 (134)
T PF00293_consen 82 EIVIFFIAELPS 93 (134)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEeC
Confidence 455556665543
No 50
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.50 E-value=1.5e-13 Score=114.55 Aligned_cols=76 Identities=25% Similarity=0.222 Sum_probs=57.8
Q ss_pred CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE-EEEEEeecCCCCCCC-CeeEEEEEEEEeec
Q 020612 233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV-VYHTSQPWPVGPNSM-PCQLMVGFYAYAKS 310 (323)
Q Consensus 233 ~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v-~~~gs~~~~~~~~~~-~~~lmi~f~a~~~~ 310 (323)
.++|||+++.+ .+.|.+|||+||.|||+++||+||++||||+++... ++++.+.+....... .+...+.|.+.+..
T Consensus 14 ~~~vLLv~~~~--~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~ 91 (122)
T cd04666 14 EVEVLLVTSRR--TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTE 91 (122)
T ss_pred ceEEEEEEecC--CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEEEEEEec
Confidence 46899999875 389999999999999999999999999999998777 888887765432211 23344455555443
No 51
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.50 E-value=5.6e-14 Score=116.57 Aligned_cols=81 Identities=31% Similarity=0.368 Sum_probs=58.4
Q ss_pred CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE----eecCCCCCCCCeeEEEEEEEEee
Q 020612 234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS----QPWPVGPNSMPCQLMVGFYAYAK 309 (323)
Q Consensus 234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs----~~~~~~~~~~~~~lmi~f~a~~~ 309 (323)
.++||+|++. +.|.+|||++++|||+++||+||++||||+++..+.+++. +.+.. . .....+..|.+.+.
T Consensus 17 ~~vLl~~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~f~~~~~ 90 (130)
T cd03428 17 IEYLLLQASY---GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQV--R-GKLKTVTYFLAELR 90 (130)
T ss_pred ceEEEEEccC---CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccc--c-CcceEEEEEEEEeC
Confidence 3799999875 8999999999999999999999999999999877766422 22221 1 12345566777765
Q ss_pred -ccCCCCCccccc
Q 020612 310 -SFEINVDKEELE 321 (323)
Q Consensus 310 -~~~i~~d~~Eie 321 (323)
...+.++ +|+.
T Consensus 91 ~~~~~~~~-~E~~ 102 (130)
T cd03428 91 PDVEVKLS-EEHQ 102 (130)
T ss_pred CCCccccc-ccee
Confidence 3445555 4544
No 52
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=2.5e-13 Score=114.14 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=62.6
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee-ccEEEEEEee--cCC-CCCC-CC
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV-GEVVYHTSQP--WPV-GPNS-MP 297 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v-~~v~~~gs~~--~~~-~~~~-~~ 297 (323)
+|.++|++ +++|||+++.+ .+.|.+|||+||+|||+++||+||++||||+++ .....++... ++. ..+. ..
T Consensus 2 ~~~~ii~~--~~~vLLv~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (131)
T cd04686 2 AVRAIILQ--GDKILLLYTKR--YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIF 77 (131)
T ss_pred cEEEEEEE--CCEEEEEEEcC--CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCcee
Confidence 35566666 48999999876 468999999999999999999999999999987 4455555542 111 1111 12
Q ss_pred eeEEEEEEEEeecc--CCCCCccc
Q 020612 298 CQLMVGFYAYAKSF--EINVDKEE 319 (323)
Q Consensus 298 ~~lmi~f~a~~~~~--~i~~d~~E 319 (323)
+.+.+.|.+..... ...+++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~e 101 (131)
T cd04686 78 HMISYYYLCEVDAELGAQQLEDYE 101 (131)
T ss_pred EEEEEEEEEEEcCCcCCcccchhh
Confidence 33456666665432 34444444
No 53
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.49 E-value=1.2e-13 Score=123.92 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=68.7
Q ss_pred ccEEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCC-CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPG-ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM 296 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~G-Es~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~ 296 (323)
..+|++.+...+++++||.||.. .+.|.|+||||++|+| |++++||+||++||||+.+..++++++.+..+...++
T Consensus 31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~ 110 (190)
T PRK10707 31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY 110 (190)
T ss_pred CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence 34555545544446899888653 4578999999999985 6899999999999999999999999987643333333
Q ss_pred CeeEEEEEEEEeeccCCCCCcccccC
Q 020612 297 PCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
....++++.+. .....+|++|+.+
T Consensus 111 ~~~~~v~~~~~--~~~~~~d~~Ev~~ 134 (190)
T PRK10707 111 QVTPVVGIIPP--DLPYRANEDEVAA 134 (190)
T ss_pred EEEEEEEEECC--CCCCCCChhhhhe
Confidence 33333333322 2345566677654
No 54
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.48 E-value=2e-13 Score=121.32 Aligned_cols=95 Identities=25% Similarity=0.381 Sum_probs=66.3
Q ss_pred cEEEEEEEeCCCCeEEEEeecc---CCCCcc-cceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMW-SCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP 297 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~---~~~g~w-~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~ 297 (323)
+++.++|++. +++|||++|.. +.+|.| .+|||+|++|||+++||+||++||||+.+..+.+++++.+... .
T Consensus 38 ~~~~v~v~~~-~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~----~ 112 (180)
T PRK15393 38 RATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDE----N 112 (180)
T ss_pred EEEEEEEECC-CCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCC----C
Confidence 4566667775 58999998863 346666 5899999999999999999999999999877777776543321 1
Q ss_pred eeEE-EEEEEEeeccCCCCCcccccC
Q 020612 298 CQLM-VGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 298 ~~lm-i~f~a~~~~~~i~~d~~Eied 322 (323)
...+ ..|.+. ..+.+.++++|+.+
T Consensus 113 ~~~~~~~f~~~-~~~~~~~~~~E~~~ 137 (180)
T PRK15393 113 CRVWGALFSCV-SHGPFALQEEEVSE 137 (180)
T ss_pred ceEEEEEEEEE-eCCCCCCChHHeeE
Confidence 1222 234443 34556666667643
No 55
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.48 E-value=5.3e-13 Score=111.12 Aligned_cols=81 Identities=33% Similarity=0.535 Sum_probs=62.9
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~ 303 (323)
|++++++ ++++||+++. .+.|.+|||++++||++++||+||++||||+++..+.+++.+...... .......
T Consensus 3 v~vi~~~--~~~vLl~~~~---~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~---~~~~~~~ 74 (118)
T cd04665 3 VLVICFY--DDGLLLVRHK---DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFE---SGFETLV 74 (118)
T ss_pred EEEEEEE--CCEEEEEEeC---CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCC---CcEEEEE
Confidence 4444444 4899999986 367999999999999999999999999999999999999987654322 2345556
Q ss_pred EEEEeeccC
Q 020612 304 FYAYAKSFE 312 (323)
Q Consensus 304 f~a~~~~~~ 312 (323)
|++......
T Consensus 75 y~a~~~~~~ 83 (118)
T cd04665 75 YPAVSAQLE 83 (118)
T ss_pred EEEEEEecc
Confidence 777666443
No 56
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=4.7e-13 Score=114.90 Aligned_cols=64 Identities=31% Similarity=0.460 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE----EEEEEe
Q 020612 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV----VYHTSQ 287 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v----~~~gs~ 287 (323)
+|.+++++. +++|||+||.. ..+|.|++|||++++||++++||+||++||+|+.+... ++++..
T Consensus 3 ~v~viv~~~-~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~ 73 (143)
T cd04694 3 GVAVLLQSS-DQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLW 73 (143)
T ss_pred EEEEEEEcC-CCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeee
Confidence 455666665 58999999975 35789999999999999999999999999999988653 565543
No 57
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.46 E-value=5.2e-13 Score=121.00 Aligned_cols=88 Identities=28% Similarity=0.338 Sum_probs=67.1
Q ss_pred cCCcccEEEEEEEeCCCCeEEEEeeccCCCC-------cccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 020612 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPR-------MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289 (323)
Q Consensus 217 ypr~~pvVivlV~~~~~~riLL~rr~~~~~g-------~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~ 289 (323)
+.+.+ +|+++.+++++++|||+||.|++.+ .|++|+|.+|+||++++||+||+.||||+++..+.+++.+.-
T Consensus 46 v~~~~-~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~ 124 (202)
T PRK10729 46 FERGH-AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLA 124 (202)
T ss_pred EEcCC-eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEc
Confidence 44444 4555556655579999999987643 589999999999999999999999999999999888876532
Q ss_pred CCCCCCCCeeEEEEEEEEe
Q 020612 290 PVGPNSMPCQLMVGFYAYA 308 (323)
Q Consensus 290 ~~~~~~~~~~lmi~f~a~~ 308 (323)
.. ++....+..|++..
T Consensus 125 sp---g~~~e~~~~fla~~ 140 (202)
T PRK10729 125 SP---GGTSERSSIMVGEV 140 (202)
T ss_pred CC---CcCceEEEEEEEEE
Confidence 22 23446677777764
No 58
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.46 E-value=5.5e-13 Score=115.78 Aligned_cols=65 Identities=29% Similarity=0.509 Sum_probs=56.6
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~ 287 (323)
.++|.++|++. +++|||+||.+ .++.|++|||++++||++++||.||++||||+++..+++++..
T Consensus 8 ~~~v~~~i~~~-~g~vLL~~r~~-~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~ 72 (156)
T PRK00714 8 RPNVGIILLNR-QGQVFWGRRIG-QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAET 72 (156)
T ss_pred CCeEEEEEEec-CCEEEEEEEcC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEc
Confidence 45778888886 47999999975 3589999999999999999999999999999999888877764
No 59
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.46 E-value=2.9e-13 Score=118.22 Aligned_cols=100 Identities=19% Similarity=0.314 Sum_probs=67.7
Q ss_pred ccEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeeccEEEE-EEeecC--CCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVYH-TSQPWP--VGP 293 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~-gs~~~~--~~~ 293 (323)
..+|.++|++. +++|||+||+. ..+|.|++| ||+|++|||+++||+||++||||+++..+.++ +...+. +..
T Consensus 30 ~~~v~v~i~~~-~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 108 (165)
T cd02885 30 HRAFSVFLFNS-KGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDG 108 (165)
T ss_pred eeEEEEEEEcC-CCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCC
Confidence 34566677775 58999999874 357999996 89999999999999999999999998766654 333222 111
Q ss_pred CCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 294 NSMPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 294 ~~~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
....+.+.+.|.+... ....++.+|+.+
T Consensus 109 ~~~~~~i~~~f~~~~~-~~~~~~~~Ev~~ 136 (165)
T cd02885 109 GLVEHEIDHVFFARAD-VTLIPNPDEVSE 136 (165)
T ss_pred CceeeEEEEEEEEEeC-CCCCCCccceeE
Confidence 1112234455655543 344456667653
No 60
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.45 E-value=5.1e-13 Score=119.40 Aligned_cols=87 Identities=30% Similarity=0.337 Sum_probs=68.2
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCC-------CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP 293 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~-------~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~ 293 (323)
.++|.+++++.+++++||+||.|++ +..|++|||+||+||++++||+||++||||+++..+.++++.....
T Consensus 44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~-- 121 (185)
T TIGR00052 44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSP-- 121 (185)
T ss_pred CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCC--
Confidence 4466666676556899999998743 3578999999999999999999999999999999999888764332
Q ss_pred CCCCeeEEEEEEEEeec
Q 020612 294 NSMPCQLMVGFYAYAKS 310 (323)
Q Consensus 294 ~~~~~~lmi~f~a~~~~ 310 (323)
+.....+..|++....
T Consensus 122 -g~~~~~~~~f~a~~~~ 137 (185)
T TIGR00052 122 -GGVTELIHLFIAEVDD 137 (185)
T ss_pred -CCCcEEEEEEEEEEch
Confidence 2344677778887553
No 61
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.45 E-value=9.2e-13 Score=117.35 Aligned_cols=83 Identities=24% Similarity=0.235 Sum_probs=63.5
Q ss_pred EEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l 300 (323)
+|+++.+++ ++++||+||.+.+ ...|++|||.||+||++++||+||++||||+++..+++++.+....+ .....
T Consensus 49 ~v~v~~~~~-~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~---~~~~~ 124 (185)
T PRK11762 49 AVMIVPILD-DDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPS---YFSSK 124 (185)
T ss_pred EEEEEEEeC-CCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCC---ccCcE
Confidence 444444543 5799999998643 45799999999999999999999999999999999999987653322 23356
Q ss_pred EEEEEEEee
Q 020612 301 MVGFYAYAK 309 (323)
Q Consensus 301 mi~f~a~~~ 309 (323)
++.|++...
T Consensus 125 ~~~f~a~~~ 133 (185)
T PRK11762 125 MNIVLAEDL 133 (185)
T ss_pred EEEEEEEcc
Confidence 666777543
No 62
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.45 E-value=4.3e-13 Score=119.36 Aligned_cols=101 Identities=23% Similarity=0.359 Sum_probs=69.4
Q ss_pred cccEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeeccEEE-EEEeecC--CC
Q 020612 220 VDPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVY-HTSQPWP--VG 292 (323)
Q Consensus 220 ~~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~~v~~-~gs~~~~--~~ 292 (323)
...++.++|++. +++|||+||+. ..+|.|.+| ||++++|||+++||+||++|||||++..+.. ++.+.+. ..
T Consensus 33 ~h~av~v~i~~~-~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 111 (184)
T PRK03759 33 LHLAFSCYLFDA-DGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDP 111 (184)
T ss_pred eeeEEEEEEEcC-CCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecC
Confidence 355777878875 58999999853 347889875 8999999999999999999999998865443 3333221 11
Q ss_pred CCCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 293 PNSMPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 293 ~~~~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
.......++..|.+... +.+.++++|+.+
T Consensus 112 ~~~~~~~~~~vf~~~~~-~~~~~~~~Ev~~ 140 (184)
T PRK03759 112 NGIVENEVCPVFAARVT-SALQPNPDEVMD 140 (184)
T ss_pred CCceeeEEEEEEEEEEC-CCCCCChhHeee
Confidence 11112345566777654 456677777654
No 63
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.43 E-value=1.4e-12 Score=108.89 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=59.7
Q ss_pred EEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612 225 IMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV 302 (323)
Q Consensus 225 ivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi 302 (323)
+++|++. +++|||+||.. ...|+|++|||+||+|||+++|++||++||||+++....+++...+.+.. ....+.
T Consensus 7 ~~~ii~~-~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~ 82 (135)
T PRK10546 7 VAAIIER-DGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSG---RRIHLH 82 (135)
T ss_pred EEEEEec-CCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCC---cEEEEE
Confidence 3334443 58999998864 35789999999999999999999999999999998777777776665432 122344
Q ss_pred EEEEEee
Q 020612 303 GFYAYAK 309 (323)
Q Consensus 303 ~f~a~~~ 309 (323)
.|.+...
T Consensus 83 ~~~~~~~ 89 (135)
T PRK10546 83 AWHVPDF 89 (135)
T ss_pred EEEEEEe
Confidence 4555443
No 64
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.43 E-value=1.5e-12 Score=106.96 Aligned_cols=67 Identities=25% Similarity=0.461 Sum_probs=54.4
Q ss_pred EEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612 224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~ 291 (323)
++++|.+ .++++||+||.. ..+|+|++|||++++||++++|+.||++||||+++....+++...+.+
T Consensus 7 ~~~ii~~-~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~ 75 (129)
T PRK10776 7 AVGIIRN-PNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEF 75 (129)
T ss_pred EEEEEEC-CCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeC
Confidence 3344444 357999999975 347899999999999999999999999999999987777777666655
No 65
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.43 E-value=7.9e-13 Score=111.38 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=58.0
Q ss_pred CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE-----eecCC--CC--CCCCeeEEE
Q 020612 232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS-----QPWPV--GP--NSMPCQLMV 302 (323)
Q Consensus 232 ~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs-----~~~~~--~~--~~~~~~lmi 302 (323)
+++++||+|+.....|.|+||||+||+|||+++||+||++||||+.+.. ..++. +.+.+ .. ........+
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKVF 89 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEEE
Confidence 3678999998754468999999999999999999999999999997643 22222 22211 10 011224566
Q ss_pred EEEEEeeccCCCCC
Q 020612 303 GFYAYAKSFEINVD 316 (323)
Q Consensus 303 ~f~a~~~~~~i~~d 316 (323)
.|.+...++++.++
T Consensus 90 ~f~~~~~~g~~~~~ 103 (132)
T cd04661 90 FFKARYMSGQFELS 103 (132)
T ss_pred EEEEEEecCccccC
Confidence 77777777766543
No 66
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.42 E-value=2.1e-12 Score=104.70 Aligned_cols=85 Identities=28% Similarity=0.339 Sum_probs=65.4
Q ss_pred EEEEEEEeCCCCeEEEEeeccC--CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l 300 (323)
+++++|++. ++++||++|++. .+|+|++|||+++.+|+++++|.||++||||+++...++++...+.+.. ....
T Consensus 3 ~~~~~i~~~-~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~---~~~~ 78 (124)
T cd03425 3 VVAAIIIDD-DGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPD---KRVT 78 (124)
T ss_pred EEEEEEECC-CCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCC---CeEE
Confidence 455566664 489999998753 5889999999999999999999999999999998887888877766532 2345
Q ss_pred EEEEEEEeecc
Q 020612 301 MVGFYAYAKSF 311 (323)
Q Consensus 301 mi~f~a~~~~~ 311 (323)
+..|.+....+
T Consensus 79 ~~~~~~~~~~~ 89 (124)
T cd03425 79 LHVFLVELWSG 89 (124)
T ss_pred EEEEEEeeeCC
Confidence 56666655433
No 67
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.42 E-value=2.8e-12 Score=111.77 Aligned_cols=81 Identities=28% Similarity=0.307 Sum_probs=63.6
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV 302 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi 302 (323)
.|.+++.. ++++||+++.+ ..|++|||++|+|||+++||+||++||||+.+..+++++.+.... +.....+.
T Consensus 26 ~V~ii~~~--~~~~LL~~~~~---~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~---~~~~~~~~ 97 (156)
T TIGR02705 26 HVLVIPRY--KDQWLLTEHKR---RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEG---ESTDFVKD 97 (156)
T ss_pred EEEEEEEE--CCEEEEEEEcC---CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecC---CCcEEEEE
Confidence 44444444 36899998874 459999999999999999999999999999999999999765432 12557778
Q ss_pred EEEEEeecc
Q 020612 303 GFYAYAKSF 311 (323)
Q Consensus 303 ~f~a~~~~~ 311 (323)
.|+|.....
T Consensus 98 vf~A~~~~~ 106 (156)
T TIGR02705 98 VYFAEVSAL 106 (156)
T ss_pred EEEEEEecc
Confidence 888877643
No 68
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.41 E-value=2.8e-12 Score=102.90 Aligned_cols=89 Identities=30% Similarity=0.355 Sum_probs=64.7
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV 302 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi 302 (323)
++.+++++. ++++||++|.+.+.|+|.+|||+++.||++.++++||++||+|+.+....+.+...+..... .....++
T Consensus 2 ~~~~i~~~~-~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (123)
T cd02883 2 AVGAVILDE-DGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDE-GEHAVVF 79 (123)
T ss_pred ceEEEEECC-CCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCC-CceEEEE
Confidence 456666664 37999999886567899999999999999999999999999999886555555543332211 1346667
Q ss_pred EEEEEeeccCC
Q 020612 303 GFYAYAKSFEI 313 (323)
Q Consensus 303 ~f~a~~~~~~i 313 (323)
.|.+.......
T Consensus 80 ~~~~~~~~~~~ 90 (123)
T cd02883 80 VFLARLVGGEP 90 (123)
T ss_pred EEEEEeCCCCc
Confidence 77776654433
No 69
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.38 E-value=2.6e-12 Score=124.87 Aligned_cols=94 Identities=28% Similarity=0.303 Sum_probs=64.8
Q ss_pred cccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE------e
Q 020612 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS------Q 287 (323)
Q Consensus 215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs------~ 287 (323)
.-||.+..++.++|+. +++|||+||.. +.+|.|.+|||+||+|||+++||+||++|||||++....+.+. +
T Consensus 197 ~~~~~~~vtv~avv~~--~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f 274 (340)
T PRK05379 197 APYPPTFVTVDAVVVQ--SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVF 274 (340)
T ss_pred cCCCCcceEEEEEEEE--CCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEE
Confidence 3466655555555555 47999999875 4478999999999999999999999999999998754443332 1
Q ss_pred ecCCCCCCCCeeEEEEEEEEeecc
Q 020612 288 PWPVGPNSMPCQLMVGFYAYAKSF 311 (323)
Q Consensus 288 ~~~~~~~~~~~~lmi~f~a~~~~~ 311 (323)
.++.... ....+.+.|++....+
T Consensus 275 ~~p~r~~-~~~~i~~~f~~~~~~~ 297 (340)
T PRK05379 275 DHPGRSL-RGRTITHAFLFEFPAG 297 (340)
T ss_pred cCCCCCC-CCcEEEEEEEEEecCC
Confidence 2221111 1245667777765533
No 70
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.38 E-value=1.9e-12 Score=112.49 Aligned_cols=97 Identities=24% Similarity=0.333 Sum_probs=65.5
Q ss_pred ccEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeeccEE--EEEEeecCCC-C
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVV--YHTSQPWPVG-P 293 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~~v~--~~gs~~~~~~-~ 293 (323)
..++.++|++. +++|||+||+. ..+|+|++| ||+++.|| .+||+||++|||||++..++ .++...+... .
T Consensus 27 h~~v~v~v~~~-~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~ 103 (158)
T TIGR02150 27 HRAFSVFLFNE-EGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDA 103 (158)
T ss_pred EEEEEEEEEcC-CCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecC
Confidence 34566777765 58999999874 458999997 89999999 49999999999999886553 3332222211 1
Q ss_pred CCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 294 NSMPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 294 ~~~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
++ ...++..|.+.... .+.++++|+++
T Consensus 104 ~g-~~~~~~~f~~~~~~-~~~~~~~Ev~~ 130 (158)
T TIGR02150 104 WG-EHELCPVFFARAPV-PLNPNPEEVAE 130 (158)
T ss_pred CC-cEEEEEEEEEecCC-cccCChhHeee
Confidence 12 23455666665543 56666667764
No 71
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=9.2e-12 Score=102.65 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=53.4
Q ss_pred EEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612 224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~ 291 (323)
+.++|++ +++++||+||.. ...|+|++|||.++.||++++|++||++||||+++....+++...+.+
T Consensus 7 ~~~ii~~-~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~ 75 (128)
T TIGR00586 7 AVGIIRN-ENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFY 75 (128)
T ss_pred EEEEEEC-CCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEEC
Confidence 3344444 357999999874 347899999999999999999999999999999987666666655544
No 72
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.35 E-value=2.7e-12 Score=113.50 Aligned_cols=96 Identities=20% Similarity=0.167 Sum_probs=65.3
Q ss_pred EEEeCC-CCeEEEEeecc---CCCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCeecc---EEEEEEeecCC--CCCCC
Q 020612 227 LVIDRE-NDRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE---VVYHTSQPWPV--GPNSM 296 (323)
Q Consensus 227 lV~~~~-~~riLL~rr~~---~~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v~~---v~~~gs~~~~~--~~~~~ 296 (323)
++.+.+ +++|+++||+. ..||+|+ +|||+|+.|||+++||+||++|||||++.. +.+++...+.+ .....
T Consensus 40 ~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~ 119 (180)
T cd03676 40 YVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGL 119 (180)
T ss_pred EEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcE
Confidence 344543 37999999974 4689995 899999999999999999999999998765 44555433322 12222
Q ss_pred CeeEEEEEEEEeecc-CCCCCcccccC
Q 020612 297 PCQLMVGFYAYAKSF-EINVDKEELEG 322 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~-~i~~d~~Eied 322 (323)
...+++.|.+..... .+.++++|+.+
T Consensus 120 ~~e~~~~f~~~~~~~~~~~~~~~Ev~~ 146 (180)
T cd03676 120 QPEVEYVYDLELPPDFIPAPQDGEVES 146 (180)
T ss_pred eeeEEEEEEEEcCCCCeeCCCCCcEeE
Confidence 334555566654322 35567777764
No 73
>PLN02709 nudix hydrolase
Probab=99.33 E-value=6.5e-12 Score=115.13 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=69.9
Q ss_pred cEEEEEEEeC-----CCCeEEEEeecc---CCCCcccceeeecCCCC-CHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612 222 PVVIMLVIDR-----ENDRVLLSRQSR---FVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVVYHTSQPWPVG 292 (323)
Q Consensus 222 pvVivlV~~~-----~~~riLL~rr~~---~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~ 292 (323)
.+|.+.++.. .+.+|||.+|+. ..+|.|+||||++|++| ++.+||+||++||+||....++.+|..+....
T Consensus 34 AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t 113 (222)
T PLN02709 34 SAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN 113 (222)
T ss_pred cEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC
Confidence 3455555542 234899999985 46899999999999975 79999999999999999998999887654333
Q ss_pred CCCCCeeEEEEEEEEee---ccCCCCCcccccC
Q 020612 293 PNSMPCQLMVGFYAYAK---SFEINVDKEELEG 322 (323)
Q Consensus 293 ~~~~~~~lmi~f~a~~~---~~~i~~d~~Eied 322 (323)
..+ ..+.-|.+.+. ...+.++++|+++
T Consensus 114 ~sg---~~V~P~V~~~~~~~~~~~~~np~EV~~ 143 (222)
T PLN02709 114 KKG---MSVAPVIGFLHDKKAFKPLPNPAEVEE 143 (222)
T ss_pred CCC---CEEEEEEEEecCCCCccccCChhhhhe
Confidence 333 23444454443 2344578888875
No 74
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=1.1e-11 Score=104.98 Aligned_cols=86 Identities=34% Similarity=0.315 Sum_probs=59.7
Q ss_pred EEEEEEEeCCCCeEEEEeeccC---CCCcccceeeecCCCCCHHHHHHHHHHHHhCCee-ccEEEEEEee--cCCCCCCC
Q 020612 223 VVIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV-GEVVYHTSQP--WPVGPNSM 296 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~---~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v-~~v~~~gs~~--~~~~~~~~ 296 (323)
++-+++++. +++|||+|+... ..+.|.+|||+|+.||++++|++||++||||+++ .....+.... +.+... .
T Consensus 2 ~~~~~i~~~-~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~-~ 79 (133)
T cd04685 2 AARVVLLDP-DDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV-D 79 (133)
T ss_pred eEEEEEEcC-CCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc-c
Confidence 356777775 589999988653 4679999999999999999999999999999988 4444433322 211111 1
Q ss_pred CeeEEEEEEEEeec
Q 020612 297 PCQLMVGFYAYAKS 310 (323)
Q Consensus 297 ~~~lmi~f~a~~~~ 310 (323)
.++..+.|.+....
T Consensus 80 ~~~~~~~f~~~~~~ 93 (133)
T cd04685 80 GRQEERFFLARTPR 93 (133)
T ss_pred ceeeEEEEEEEcCC
Confidence 23445566666543
No 75
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.32 E-value=1.3e-11 Score=110.93 Aligned_cols=84 Identities=27% Similarity=0.287 Sum_probs=65.4
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCCC------C--cccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFVP------R--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP 293 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~~------g--~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~ 293 (323)
.+|.+++++.++++|||+||.|++. + .|++|||.+|+| ++++||+||++||||+.+..+.+++++. + .
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~-~--s 121 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELY-M--S 121 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEE-c--C
Confidence 3555666676568999999998653 4 578999999976 6999999999999999999999988752 2 2
Q ss_pred CCCCeeEEEEEEEEee
Q 020612 294 NSMPCQLMVGFYAYAK 309 (323)
Q Consensus 294 ~~~~~~lmi~f~a~~~ 309 (323)
.++....++.|+|...
T Consensus 122 pG~s~e~~~lf~a~~~ 137 (191)
T PRK15009 122 PGGVTELIHFFIAEYS 137 (191)
T ss_pred CcccCcEEEEEEEEEC
Confidence 2345567778888753
No 76
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.27 E-value=3.5e-11 Score=101.41 Aligned_cols=51 Identities=31% Similarity=0.255 Sum_probs=42.1
Q ss_pred EeCCCCeEEEEeecc-----CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec
Q 020612 229 IDRENDRVLLSRQSR-----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (323)
Q Consensus 229 ~~~~~~riLL~rr~~-----~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~ 279 (323)
.+.+..+|||++|.. ...+.|++|||+++.||++++||+||++||||+++.
T Consensus 10 ~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 10 FRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 343345799998732 336789999999999999999999999999999864
No 77
>PRK08999 hypothetical protein; Provisional
Probab=99.13 E-value=3.7e-10 Score=107.84 Aligned_cols=68 Identities=32% Similarity=0.480 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612 223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~ 291 (323)
++.++|++. ++++||+||.. .+.|+|++|||++|+||++++|+.||++||||+.+.....+++..+.+
T Consensus 7 ~~~~vi~~~-~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~ 76 (312)
T PRK08999 7 VAAGVIRDA-DGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDY 76 (312)
T ss_pred EEEEEEECC-CCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEc
Confidence 334444443 58999998864 457899999999999999999999999999999987777777766655
No 78
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.11 E-value=6e-10 Score=90.87 Aligned_cols=68 Identities=34% Similarity=0.407 Sum_probs=52.6
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHH-HHHHHHHHHhCCeec--cEEEEEEeecCC
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE-AVRRETWEETGIEVG--EVVYHTSQPWPV 291 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~ee-Aa~REv~EEtGL~v~--~v~~~gs~~~~~ 291 (323)
.+.+++......++|+.++.... +.|.+|||+||+||++++ ||+||++||||+.+. ...+++.++...
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~-~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 83 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG-GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSP 83 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC-CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcc
Confidence 44444444322788888887633 699999999999999888 999999999999988 677777765544
No 79
>PF09296 NUDIX-like: NADH pyrophosphatase-like rudimentary NUDIX domain; InterPro: IPR015375 This entry represents the N-terminal domain found in NADH pyrophosphatase. Nitrate reductase inactivator (NRI) protein shares 51.1-68.3% of its amino acid sequence with three types of the nucleotide pyrophosphatase-like protein from Arabidopsis thaliana.; GO: 0016787 hydrolase activity; PDB: 1VK6_A 2GB5_A.
Probab=99.10 E-value=3e-10 Score=89.95 Aligned_cols=98 Identities=28% Similarity=0.341 Sum_probs=54.9
Q ss_pred CeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 020612 64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG 143 (323)
Q Consensus 64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~~~~~~ 143 (323)
++|+++|+++++|+...++. . .+......+.. ......+|||.. +++.+|||++++..... ....
T Consensus 1 ~a~~~~~~~~~~lv~~~~~~--~--~~~~~~~~~~~---------~~~~~~~~LG~~-~gg~~~fa~~~~~~~~~-~~~~ 65 (98)
T PF09296_consen 1 SARWLLFSGGRLLVKKDGGD--L--LLPPGDAAELG---------LPEEEAVFLGED-EGGQPCFAVDLSEEPDS-QLEL 65 (98)
T ss_dssp -EEEEEEETTEEE-GG------G--S--EEEGGGGT----------TTSEEEEEEEE-TT-EEEEEEE---SS-------
T ss_pred CEEEEEEECCEEEEecCccc--e--eecccchhhcc---------CCCCcEEEeeec-CCEeEEEEEEcCccccc-cccc
Confidence 47999999999999763321 1 22222222221 145678999986 33499999999877641 1113
Q ss_pred ccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhh
Q 020612 144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEW 182 (323)
Q Consensus 144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W 182 (323)
..+..|.+||+++..+ ++.+++++++|++|++|
T Consensus 66 ~~~~~~~~LR~~~~~l------~~~~~~l~a~A~~ll~W 98 (98)
T PF09296_consen 66 PEGFEFVDLRQLGGQL------PEEDAGLAARARQLLDW 98 (98)
T ss_dssp -----EE-GGGGT-TS-------HHHHHHHHHHHHHHH-
T ss_pred cccccchhHHHHHHcC------CHHHHHHHHHHHHHhcC
Confidence 5678999999998665 45789999999999999
No 80
>PLN02791 Nudix hydrolase homolog
Probab=98.97 E-value=2.6e-09 Score=113.05 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=71.5
Q ss_pred ccEEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCC--C
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPV--G 292 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~gs~~~~~--~ 292 (323)
..++.++|++.++++|||+||+. .+||+|++ +||+++.||+.++|++||++||+||.+ ..+.+++++.+.. .
T Consensus 32 HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~ 111 (770)
T PLN02791 32 HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIN 111 (770)
T ss_pred eEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeecc
Confidence 34778888886568999999974 56899998 799999999999999999999999975 3456666532211 1
Q ss_pred CCCC-CeeEEEEEEEEee----ccCCCCCcccccC
Q 020612 293 PNSM-PCQLMVGFYAYAK----SFEINVDKEELEG 322 (323)
Q Consensus 293 ~~~~-~~~lmi~f~a~~~----~~~i~~d~~Eied 322 (323)
...+ .+.+...|++... ..+++++++|+++
T Consensus 112 ~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~ 146 (770)
T PLN02791 112 DGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSA 146 (770)
T ss_pred CCCcceeeEEEEEEEEECCCCCcccCCCChhhhhe
Confidence 1111 2234445554432 2356788889875
No 81
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.97 E-value=3.7e-09 Score=89.17 Aligned_cols=42 Identities=31% Similarity=0.439 Sum_probs=36.8
Q ss_pred CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee
Q 020612 234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278 (323)
Q Consensus 234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v 278 (323)
.+||+.|... +.|.+|||+|++||++++||+||++||||+++
T Consensus 14 ~~ll~~r~~~---~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 14 LELLVFEHPL---AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEEcCC---CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 3777776653 56999999999999999999999999999987
No 82
>PLN03143 nudix hydrolase; Provisional
Probab=98.93 E-value=5.3e-09 Score=99.69 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=49.5
Q ss_pred ccCCcccEEEEEEEeCCC-CeEEEEeeccCCCC--cccceeeecCC-CCCHHHHHHHHHHHHhCCeec--cEEEE
Q 020612 216 IYPRVDPVVIMLVIDREN-DRVLLSRQSRFVPR--MWSCIAGFIEP-GESLEEAVRRETWEETGIEVG--EVVYH 284 (323)
Q Consensus 216 ~ypr~~pvVivlV~~~~~-~riLL~rr~~~~~g--~w~lPgG~VE~-GEs~eeAa~REv~EEtGL~v~--~v~~~ 284 (323)
.|.+...|+++++++.++ .+++|+||.|.+.| .|++|||.+|+ +|++++||+||++||||+.+. .+..+
T Consensus 124 v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L 198 (291)
T PLN03143 124 VFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDL 198 (291)
T ss_pred EEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEe
Confidence 344444444444444332 34999999986544 67899999997 489999999999999999853 45444
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.91 E-value=8e-09 Score=96.42 Aligned_cols=100 Identities=14% Similarity=0.305 Sum_probs=63.8
Q ss_pred cEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCC-----------------HHHHHHHHHHHHhCCeecc
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGES-----------------LEEAVRRETWEETGIEVGE 280 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs-----------------~eeAa~REv~EEtGL~v~~ 280 (323)
-++.++|++. +++|||+||+. ..||+|+.. +|++..||+ ..+||+||++||+||.+..
T Consensus 57 ra~~v~i~n~-~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~ 135 (247)
T PLN02552 57 RAFSVFLFNS-KYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAED 135 (247)
T ss_pred EEEEEEEEcC-CCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccc
Confidence 3677888886 58999999974 468999654 455554422 6899999999999998543
Q ss_pred -----EEEEEEeecCCCCC------C-C-CeeEEEEEEEE-eeccCCCCCcccccC
Q 020612 281 -----VVYHTSQPWPVGPN------S-M-PCQLMVGFYAY-AKSFEINVDKEELEG 322 (323)
Q Consensus 281 -----v~~~gs~~~~~~~~------~-~-~~~lmi~f~a~-~~~~~i~~d~~Eied 322 (323)
+.+++++.+..... + . .+.+.+.|+.. ...+++.++++|+.+
T Consensus 136 ~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~ 191 (247)
T PLN02552 136 VPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVAD 191 (247)
T ss_pred cccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhhe
Confidence 56666544332111 1 0 12222233332 234578889999876
No 84
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.85 E-value=1.3e-08 Score=91.31 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=38.2
Q ss_pred CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee
Q 020612 234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278 (323)
Q Consensus 234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v 278 (323)
-++|++||.. .|.|.+|||+|++||++++|++||++||||+.+
T Consensus 49 l~vLl~~r~~--~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 49 LQFVAIKRPD--SGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred eEEEEEEeCC--CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 3788888865 689999999999999999999999999997653
No 85
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.76 E-value=1.8e-08 Score=85.97 Aligned_cols=62 Identities=34% Similarity=0.446 Sum_probs=49.1
Q ss_pred EEEEEeCCCC--eEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612 225 IMLVIDREND--RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287 (323)
Q Consensus 225 ivlV~~~~~~--riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~ 287 (323)
.++.+..+++ +|||+..++. +..|.+|+|++|++|+..+||.||++||.|+.-...+.++..
T Consensus 13 gCi~~r~~~~~ieVLlvsSs~~-~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~ 76 (145)
T KOG2839|consen 13 GCICYRSDKEKIEVLLVSSSKK-PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGF 76 (145)
T ss_pred EeeeeeecCcceEEEEEecCCC-CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccch
Confidence 3444444444 8999988753 457999999999999999999999999999998777755543
No 86
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.76 E-value=2.3e-08 Score=91.52 Aligned_cols=112 Identities=22% Similarity=0.224 Sum_probs=78.4
Q ss_pred CCCcccCCcccEEEEEEEeC--CCCeEEEEeecc---CCCCcccceeeecCCCC-CHHHHHHHHHHHHhCCeeccEEEEE
Q 020612 212 CKKRIYPRVDPVVIMLVIDR--ENDRVLLSRQSR---FVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVVYHT 285 (323)
Q Consensus 212 C~~~~ypr~~pvVivlV~~~--~~~riLL~rr~~---~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL~v~~v~~~g 285 (323)
|....+|+...+|.+.+++. .+.++||.||++ .+.|.-+||||..|+.+ +-+++|.||..||.|+....+.++|
T Consensus 34 ~~~~~~~~~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g 113 (246)
T KOG3069|consen 34 SETHDFPNRKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLG 113 (246)
T ss_pred cccccCCCCCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhh
Confidence 44455566666666666665 235899999985 46788999999999865 7789999999999999988888877
Q ss_pred EeecCCCCCCCCeeEEEEEEEEeec-cCCCCCcccccCC
Q 020612 286 SQPWPVGPNSMPCQLMVGFYAYAKS-FEINVDKEELEGT 323 (323)
Q Consensus 286 s~~~~~~~~~~~~~lmi~f~a~~~~-~~i~~d~~EiedA 323 (323)
..+-.+...+....-+++|.....- ....++.+|++++
T Consensus 114 ~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~ 152 (246)
T KOG3069|consen 114 ALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESA 152 (246)
T ss_pred hccceeeccCcccceeEEEEecccccccccCCchheeee
Confidence 6543332233344556666654432 4566777887754
No 87
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.73 E-value=1.1e-07 Score=84.89 Aligned_cols=62 Identities=32% Similarity=0.433 Sum_probs=50.1
Q ss_pred ccCCcccEEEEEEEeCCC-CeEEEEeeccCCCCcc--cceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612 216 IYPRVDPVVIMLVIDREN-DRVLLSRQSRFVPRMW--SCIAGFIEPGESLEEAVRRETWEETGIE 277 (323)
Q Consensus 216 ~ypr~~pvVivlV~~~~~-~riLL~rr~~~~~g~w--~lPgG~VE~GEs~eeAa~REv~EEtGL~ 277 (323)
.+-+.+.+.|..++..++ -.|+|++|.|++-|.+ ++|+|-|+.||++++||+||++||||+.
T Consensus 69 ~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~ 133 (225)
T KOG3041|consen 69 VEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK 133 (225)
T ss_pred ccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc
Confidence 455566666666655432 2689999999888865 5899999999999999999999999998
No 88
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=98.64 E-value=9.4e-09 Score=66.32 Aligned_cols=32 Identities=41% Similarity=0.943 Sum_probs=23.2
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCccc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
++|+||++||++|....+||.++|+ .|+.++|
T Consensus 1 ~~~rfC~~CG~~t~~~~~g~~r~C~--~Cg~~~y 32 (32)
T PF09297_consen 1 RNHRFCGRCGAPTKPAPGGWARRCP--SCGHEHY 32 (32)
T ss_dssp HTTSB-TTT--BEEE-SSSS-EEES--SSS-EE-
T ss_pred CCCcccCcCCccccCCCCcCEeECC--CCcCEeC
Confidence 4799999999999999999999997 7999887
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=9.3e-07 Score=83.85 Aligned_cols=64 Identities=25% Similarity=0.320 Sum_probs=51.9
Q ss_pred ccCCcccEEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 020612 216 IYPRVDPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280 (323)
Q Consensus 216 ~ypr~~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~ 280 (323)
.+-.....|.++|+|.. ++||+++... -..|.|-+|+|.|++||++-++++|||+||||++-..
T Consensus 110 ~~Ash~vgvg~~V~n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef 176 (295)
T KOG0648|consen 110 ANASHRVGVGAFVLNKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEF 176 (295)
T ss_pred CchhhheeeeeeEecCC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhh
Confidence 34444567788888875 8999988643 2378999999999999999999999999999996543
No 90
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.18 E-value=1.5e-05 Score=64.20 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=50.3
Q ss_pred CCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEee
Q 020612 233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK 309 (323)
Q Consensus 233 ~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~ 309 (323)
++++||.||.. ...|+|+||+|.++.+|+.+++..||+.||.++ ....++...+.++.. ...+..|.+...
T Consensus 13 ~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~---~~~~~~~~~~~~ 85 (118)
T cd03431 13 DGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHF---RLTLHVYLARLE 85 (118)
T ss_pred CCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCe---EEEEEEEEEEEe
Confidence 58999999964 568999999999999999999999999999775 223344555554321 133444555443
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.15 E-value=5.3e-06 Score=73.08 Aligned_cols=109 Identities=20% Similarity=0.332 Sum_probs=73.5
Q ss_pred CCCcccCCcccEEEEEEEeCCCCeEEEEeec---cCCCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCeecc---EEEE
Q 020612 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQS---RFVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE---VVYH 284 (323)
Q Consensus 212 C~~~~ypr~~pvVivlV~~~~~~riLL~rr~---~~~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v~~---v~~~ 284 (323)
|....-|+..-+..++++|. +|++||.||. +-+++.|. -..|+--+||+.++|++|-+.+|+||++.. .+++
T Consensus 24 ~Ht~d~~~LHrAFS~~lFne-~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il 102 (185)
T COG1443 24 AHTGDTPRLHRAFSSFLFNE-RGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEIL 102 (185)
T ss_pred hhccccHHHHhhhheeEECC-CCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccc
Confidence 33444454455678899997 5999999996 35789996 578999999999999999999999998762 2222
Q ss_pred EEeecCCCC-CC-CCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 285 TSQPWPVGP-NS-MPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 285 gs~~~~~~~-~~-~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
..+.|.-.. ++ ....+-..+.+...+ .+.++++|+.+
T Consensus 103 ~rf~YrA~~~~~~~E~Eic~V~~~~~~~-~~~~npdEV~~ 141 (185)
T COG1443 103 PRFRYRAADPDGIVENEICPVLAARLDS-ALDPNPDEVMD 141 (185)
T ss_pred cceEEeccCCCCcceeeeeeEEEEeecC-CCCCChHHhhh
Confidence 222222111 11 122344444555444 78888899875
No 92
>PLN02839 nudix hydrolase
Probab=98.00 E-value=2.3e-05 Score=76.68 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=59.3
Q ss_pred CCeEEEEeecc---CCCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCeec---cEEEEEEeecCCCC-CC-CCeeEEEE
Q 020612 233 NDRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVG---EVVYHTSQPWPVGP-NS-MPCQLMVG 303 (323)
Q Consensus 233 ~~riLL~rr~~---~~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v~---~v~~~gs~~~~~~~-~~-~~~~lmi~ 303 (323)
+.++.+.||+. ..||+|+ +.||.|..||++.++++||.+||.||... .+...|...|.... .+ .+..++ .
T Consensus 217 ~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly-~ 295 (372)
T PLN02839 217 QKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLF-C 295 (372)
T ss_pred CeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEE-E
Confidence 35788888874 4689996 68999999999999999999999999643 55666665554211 11 122332 3
Q ss_pred EEEEeecc-CCCCCcccccC
Q 020612 304 FYAYAKSF-EINVDKEELEG 322 (323)
Q Consensus 304 f~a~~~~~-~i~~d~~Eied 322 (323)
|-.+...+ .++.+++|+++
T Consensus 296 YDLeLP~df~P~~qDGEVe~ 315 (372)
T PLN02839 296 YDLELPQDFVPKNQDGEVES 315 (372)
T ss_pred eeeecCCccccCCCccceeE
Confidence 44333322 23456778764
No 93
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.78 E-value=9.3e-05 Score=62.19 Aligned_cols=53 Identities=36% Similarity=0.307 Sum_probs=40.8
Q ss_pred eEEEEeecc-C----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec-cEEEEEEe
Q 020612 235 RVLLSRQSR-F----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG-EVVYHTSQ 287 (323)
Q Consensus 235 riLL~rr~~-~----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~-~v~~~gs~ 287 (323)
.|||++.-. + ..|-|++|.|-+..||.++.||+||..||+||.++ ....+|+.
T Consensus 19 ~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~ 77 (161)
T COG4119 19 DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSL 77 (161)
T ss_pred EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhh
Confidence 455555443 1 15789999999999999999999999999999984 33455554
No 94
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=97.25 E-value=9.6e-05 Score=48.35 Aligned_cols=29 Identities=24% Similarity=0.637 Sum_probs=17.3
Q ss_pred CCCCCCCCCCeec----cCCccccccCCCCCCccc
Q 020612 187 RFCGHCGEKTIPK----EAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 187 ~fC~~CG~~~~~~----~~g~~~~C~~~~C~~~~y 217 (323)
+||+.||+++... +.-.+..|+ .|+.++|
T Consensus 1 kfC~~CG~~l~~~ip~gd~r~R~vC~--~Cg~IhY 33 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEGDDRERLVCP--ACGFIHY 33 (34)
T ss_dssp -B-TTT--B-EEE--TT-SS-EEEET--TTTEEE-
T ss_pred CccccccChhhhhcCCCCCccceECC--CCCCEEe
Confidence 6999999999764 344566997 7999998
No 95
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0012 Score=60.48 Aligned_cols=38 Identities=24% Similarity=0.540 Sum_probs=33.2
Q ss_pred eEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHh
Q 020612 235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET 274 (323)
Q Consensus 235 riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEt 274 (323)
+++.++|+. .|.|.+|||.|++||.+-.+++||+.||.
T Consensus 140 e~vavkr~d--~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPD--NGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCC--CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 455666665 78999999999999999999999999996
No 96
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=96.84 E-value=0.002 Score=52.38 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=47.1
Q ss_pred EEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612 226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (323)
Q Consensus 226 vlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~ 303 (323)
+++++ .++++||.||.. ...|+|+||.--++. ++..+.+.+.+.+..|+.+.....++...+.|+.. ...+..
T Consensus 2 ~~i~~-~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~---~~~~~~ 76 (114)
T PF14815_consen 2 LLIIR-SQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHR---RWTIHV 76 (114)
T ss_dssp EEEEE-TTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSE---EEEEEE
T ss_pred EEEEE-eCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccce---EEEEEE
Confidence 34444 469999999974 568999999988874 33366667777788898877777788877776432 244556
Q ss_pred EEEEeecc
Q 020612 304 FYAYAKSF 311 (323)
Q Consensus 304 f~a~~~~~ 311 (323)
|.+.+...
T Consensus 77 ~~~~~~~~ 84 (114)
T PF14815_consen 77 YEVEVSAD 84 (114)
T ss_dssp EEEEEE-S
T ss_pred EEEEecCC
Confidence 66665543
No 97
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.47 E-value=0.0029 Score=60.22 Aligned_cols=93 Identities=25% Similarity=0.279 Sum_probs=64.6
Q ss_pred cCCcccEEEEEEEeCCCCeEEEEeeccCC----------CC------cc-----------cceeeecCCCCCHHHHHHHH
Q 020612 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFV----------PR------MW-----------SCIAGFIEPGESLEEAVRRE 269 (323)
Q Consensus 217 ypr~~pvVivlV~~~~~~riLL~rr~~~~----------~g------~w-----------~lPgG~VE~GEs~eeAa~RE 269 (323)
|-.....|.+++++++-.++||+|+.|.. +| -| ++.||.|+...|+.+-|..|
T Consensus 22 ~~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~ee 101 (405)
T KOG4432|consen 22 FNQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEE 101 (405)
T ss_pred HHhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHH
Confidence 33334455666677777899999997521 11 13 46799999999999999999
Q ss_pred HHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeec
Q 020612 270 TWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS 310 (323)
Q Consensus 270 v~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~ 310 (323)
|.||.|++|..-.++..+.+..+... ..+-|..|||++..
T Consensus 102 v~eecgy~v~~d~l~hv~~~~~g~~~-s~sa~~l~y~ei~e 141 (405)
T KOG4432|consen 102 VAEECGYRVDPDDLIHVITFVVGAHQ-SGSAQHLYYAEIDE 141 (405)
T ss_pred HHHHhCCcCChhHceEEEEEEecccc-Cccchheeeeecch
Confidence 99999999865444444444443332 45778888888763
No 98
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=95.68 E-value=0.0062 Score=43.28 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=25.5
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
+.++|||+||+. .+.....+..|. .|+...|-
T Consensus 18 ~~~~fCP~Cg~~-~m~~~~~r~~C~--~Cgyt~~~ 49 (50)
T PRK00432 18 RKNKFCPRCGSG-FMAEHLDRWHCG--KCGYTEFK 49 (50)
T ss_pred EccCcCcCCCcc-hheccCCcEECC--CcCCEEec
Confidence 568899999996 555555788997 79998874
No 99
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.0074 Score=42.54 Aligned_cols=34 Identities=21% Similarity=0.533 Sum_probs=28.9
Q ss_pred hccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
-+.++|||+||.-+.+.+-..+..|. .|+...|-
T Consensus 16 ~rk~~~CPrCG~gvfmA~H~dR~~CG--kCgyTe~~ 49 (51)
T COG1998 16 KRKNRFCPRCGPGVFMADHKDRWACG--KCGYTEFK 49 (51)
T ss_pred EEccccCCCCCCcchhhhcCceeEec--cccceEee
Confidence 35789999999988888888899997 79988764
No 100
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=95.29 E-value=0.0071 Score=37.82 Aligned_cols=26 Identities=35% Similarity=0.710 Sum_probs=16.8
Q ss_pred CCCCCCCCCeeccCCccccccCC-CCC
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNA-SCK 213 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~-~C~ 213 (323)
+||.||+++...+++-..+|+|+ .|.
T Consensus 1 ~CP~C~s~l~~~~~ev~~~C~N~l~Cp 27 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVDIRCPNPLSCP 27 (28)
T ss_dssp B-TTT--BEEE-CCTTCEEE--CGC-H
T ss_pred CcCCCCCEeEcCCCCEeEECCCCCcCC
Confidence 69999999999999999999987 663
No 101
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=95.01 E-value=0.0034 Score=60.50 Aligned_cols=63 Identities=30% Similarity=0.392 Sum_probs=53.7
Q ss_pred cccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec
Q 020612 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (323)
Q Consensus 215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~ 279 (323)
..|-...|+....+.+....++||++... ...|++|-|++...|+--+++.|||.||||.+..
T Consensus 76 ~~yk~~iPv~ga~ild~~~sr~llv~g~q--a~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 76 APYKARIPVRGAIILDEKRSRCLLVKGWQ--ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred ccccCCCCCchHhhhhhhhhhhheeecee--cccccccCccccccchhhhcchhcccchhhcCHH
Confidence 34555678888888888778999998865 4569999999999999999999999999999763
No 102
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=94.55 E-value=0.05 Score=38.13 Aligned_cols=31 Identities=32% Similarity=0.668 Sum_probs=23.8
Q ss_pred CCCCCCCCCCeeccCC--ccccccCCCCCCcccCC
Q 020612 187 RFCGHCGEKTIPKEAG--KLKQCSNASCKKRIYPR 219 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g--~~~~C~~~~C~~~~ypr 219 (323)
+|||.||.-+...+.. ....|+ .|+..++-.
T Consensus 1 ~FCp~Cg~~l~~~~~~~~~~~vC~--~Cg~~~~~~ 33 (52)
T smart00661 1 KFCPKCGNMLIPKEGKEKRRFVCR--KCGYEEPIE 33 (52)
T ss_pred CCCCCCCCccccccCCCCCEEECC--cCCCeEECC
Confidence 5999999998776543 367897 799877643
No 103
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=94.05 E-value=0.46 Score=41.91 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=41.1
Q ss_pred CCeEEEEeeccC-----CCCcccc-eeeecCCCC---CHHHH----HHHHHHHHhCCe---eccEEEEEEeec
Q 020612 233 NDRVLLSRQSRF-----VPRMWSC-IAGFIEPGE---SLEEA----VRRETWEETGIE---VGEVVYHTSQPW 289 (323)
Q Consensus 233 ~~riLL~rr~~~-----~~g~w~l-PgG~VE~GE---s~eeA----a~REv~EEtGL~---v~~v~~~gs~~~ 289 (323)
.++||+..|-.- -.+.+++ .||++..++ +.++- +.||+.||+++. ...+.|+|-..-
T Consensus 71 edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd 143 (203)
T COG4112 71 EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND 143 (203)
T ss_pred CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence 579999888631 1356776 699998664 33433 679999999997 567788887653
No 104
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=92.32 E-value=0.05 Score=35.71 Aligned_cols=29 Identities=34% Similarity=0.792 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCeeccCCccc-cccCCCCCCcc
Q 020612 186 SRFCGHCGEKTIPKEAGKLK-QCSNASCKKRI 216 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~-~C~~~~C~~~~ 216 (323)
.+|||.||.-+...++.... .|. .|+..+
T Consensus 1 m~FCp~C~nlL~p~~~~~~~~~C~--~C~Y~~ 30 (35)
T PF02150_consen 1 MRFCPECGNLLYPKEDKEKRVACR--TCGYEE 30 (35)
T ss_dssp --BETTTTSBEEEEEETTTTEEES--SSS-EE
T ss_pred CeeCCCCCccceEcCCCccCcCCC--CCCCcc
Confidence 37999999999887665444 586 688654
No 105
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=92.23 E-value=0.31 Score=43.93 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=30.0
Q ss_pred CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612 234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277 (323)
Q Consensus 234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~ 277 (323)
-.|||.|.. ...|.+|||.+.+||+.++..+|.+.+-.|..
T Consensus 58 PHvLLLq~~---~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 58 PHVLLLQIG---NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEET---TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred cEEEEEecc---CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 468888865 34899999999999999999999999999875
No 106
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.63 E-value=0.3 Score=44.36 Aligned_cols=101 Identities=16% Similarity=0.309 Sum_probs=60.8
Q ss_pred ccEEEEEEEeCCCCeEEEEeecc---CCCCccc-----c----eeeecC-CCCCHHHHHHHHHHHHhCCee-----ccEE
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWS-----C----IAGFIE-PGESLEEAVRRETWEETGIEV-----GEVV 282 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~-----l----PgG~VE-~GEs~eeAa~REv~EEtGL~v-----~~v~ 282 (323)
.-+..|++++. .+++||++|+. ..++.|. - |+.--+ .+..+..||+|-++-|+||.. +.++
T Consensus 52 HRaFSVFlFns-~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~ 130 (225)
T KOG0142|consen 52 HRAFSVFLFNS-KNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFN 130 (225)
T ss_pred hheeeEEEecC-cchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcc
Confidence 44667888886 58999999874 3467774 1 222211 234678899999999999964 3567
Q ss_pred EEEEeecCCCCCCCCeeEEEEEEEEe-eccCCCCCcccccC
Q 020612 283 YHTSQPWPVGPNSMPCQLMVGFYAYA-KSFEINVDKEELEG 322 (323)
Q Consensus 283 ~~gs~~~~~~~~~~~~~lmi~f~a~~-~~~~i~~d~~Eied 322 (323)
|++.+.|-...++.-..--+-|+... ..-.+.++++|+.+
T Consensus 131 ~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e 171 (225)
T KOG0142|consen 131 FLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSE 171 (225)
T ss_pred cceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhH
Confidence 88877665433332111112222222 23455666688764
No 107
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=89.30 E-value=0.21 Score=29.72 Aligned_cols=22 Identities=27% Similarity=0.815 Sum_probs=15.3
Q ss_pred CCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
||++||+++.. ..+.|+ .||..
T Consensus 1 ~Cp~CG~~~~~----~~~fC~--~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED----DAKFCP--NCGTP 22 (23)
T ss_pred CCcccCCCCCC----cCcchh--hhCCc
Confidence 78999988853 245686 57753
No 108
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=88.69 E-value=0.18 Score=30.79 Aligned_cols=12 Identities=42% Similarity=1.082 Sum_probs=6.7
Q ss_pred cCCCCCCCCCCC
Q 020612 185 VSRFCGHCGEKT 196 (323)
Q Consensus 185 ~~~fC~~CG~~~ 196 (323)
..+||+.||+++
T Consensus 15 ~~~fC~~CG~~L 26 (26)
T PF13248_consen 15 DAKFCPNCGAKL 26 (26)
T ss_pred ccccChhhCCCC
Confidence 355666666553
No 109
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=88.13 E-value=1.3 Score=41.56 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=46.7
Q ss_pred EEEEeCCCC--eEEEEeecc---CCCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCee---ccEEEEEEeec
Q 020612 226 MLVIDREND--RVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEV---GEVVYHTSQPW 289 (323)
Q Consensus 226 vlV~~~~~~--riLL~rr~~---~~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v---~~v~~~gs~~~ 289 (323)
+.|.++.-+ +|-+.||+. -++|+|+ +.||.+-.|-.+.++++.|..||+.|.. .++...|+..|
T Consensus 138 gYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy 210 (306)
T KOG4313|consen 138 GYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSY 210 (306)
T ss_pred eeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEE
Confidence 344554434 566777764 4688886 7899999999999999999999999975 34444444333
No 110
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=87.16 E-value=1.5 Score=42.32 Aligned_cols=84 Identities=23% Similarity=0.242 Sum_probs=53.5
Q ss_pred EEEEEEEeCCCCeEEEEeeccCC----------CC-------------------cccceeeecCCCCCHHHHHHHHHHHH
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFV----------PR-------------------MWSCIAGFIEPGESLEEAVRRETWEE 273 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~----------~g-------------------~w~lPgG~VE~GEs~eeAa~REv~EE 273 (323)
.|.++++|....+++|+|+.|++ +| ..++.+|.|+..-+..+-+.||.+||
T Consensus 231 Svt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~vee 310 (405)
T KOG4432|consen 231 SVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVEE 310 (405)
T ss_pred ceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHHH
Confidence 34555566556677777776421 11 23466899998899999999999999
Q ss_pred hCCee--ccEEEEEEeecCCCCCCCCeeEEEEEEEEee
Q 020612 274 TGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK 309 (323)
Q Consensus 274 tGL~v--~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~ 309 (323)
.|+++ +.++.+..+.-..+.++ ..+.| |++++.
T Consensus 311 cGYdlp~~~~k~va~y~sGVG~SG-~~QTm--fy~eVT 345 (405)
T KOG4432|consen 311 CGYDLPEDSFKLVAKYISGVGQSG-DTQTM--FYVEVT 345 (405)
T ss_pred hCCCCCHHHHhhhheeecccCCcC-CeeEE--EEEEee
Confidence 99986 45555555433344444 22333 455554
No 111
>PF12773 DZR: Double zinc ribbon
Probab=86.45 E-value=0.48 Score=32.91 Aligned_cols=32 Identities=28% Similarity=0.639 Sum_probs=23.8
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
...+||+.||.++. ........|+ .|+....+
T Consensus 10 ~~~~fC~~CG~~l~-~~~~~~~~C~--~Cg~~~~~ 41 (50)
T PF12773_consen 10 DDAKFCPHCGTPLP-PPDQSKKICP--NCGAENPP 41 (50)
T ss_pred ccccCChhhcCChh-hccCCCCCCc--CCcCCCcC
Confidence 45789999999998 4445567887 69887544
No 112
>PRK13844 recombination protein RecR; Provisional
Probab=86.27 E-value=0.65 Score=42.28 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612 171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS 250 (323)
Q Consensus 171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~ 250 (323)
.+-..|.+|..-+.+.++|+.||.-+.. ..|+ -|.... -+..++++|-+. .-++-..+...+.|.|-
T Consensus 42 ~~~~la~~i~~~~~~i~~C~~C~~lte~------~~C~--IC~d~~---Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~Yh 108 (200)
T PRK13844 42 TAIAIANSLLDATANIKKCVYCQALTED------DVCN--ICSNTN---RDDTKLCIIESM--LDMIAIEEAGIYRGKYF 108 (200)
T ss_pred HHHHHHHHHHHHHHhCCcCCCCCCCCCC------CCCC--CCCCCC---CCCCEEEEECCH--HHHHHHHhhCccceEEE
Confidence 3455689999999999999999988752 2454 454433 244456666553 33555566667789999
Q ss_pred ceeeecCC--CCCHHHHHHHHHHHHh
Q 020612 251 CIAGFIEP--GESLEEAVRRETWEET 274 (323)
Q Consensus 251 lPgG~VE~--GEs~eeAa~REv~EEt 274 (323)
+.+|.+.| |..+++--..++.+-.
T Consensus 109 VL~G~ispl~gi~p~~l~i~~L~~Ri 134 (200)
T PRK13844 109 VLNGRISPLDGIGPSELKLDILQQII 134 (200)
T ss_pred EccCccCccCCCChhhcCHHHHHHHH
Confidence 99999986 6677777777776654
No 113
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=85.73 E-value=0.51 Score=34.97 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=27.9
Q ss_pred HhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 180 LEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 180 ~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
-.|+ +.+-||.||........+....|+ .||...
T Consensus 23 ~~~~-TSq~C~~CG~~~~~~~~~r~~~C~--~Cg~~~ 56 (69)
T PF07282_consen 23 DEAY-TSQTCPRCGHRNKKRRSGRVFTCP--NCGFEM 56 (69)
T ss_pred CCCC-CccCccCcccccccccccceEEcC--CCCCEE
Confidence 3455 899999999999987778888997 698763
No 114
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=85.30 E-value=0.52 Score=32.80 Aligned_cols=29 Identities=31% Similarity=0.682 Sum_probs=20.1
Q ss_pred CCCCCCCCCeeccC------C--ccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIPKEA------G--KLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~~~~------g--~~~~C~~~~C~~~~ 216 (323)
+||.||++...... . .--+|.|+.||..+
T Consensus 1 ~CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N~~Cg~tf 37 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLSPLTRELYCQCTNPECGHTF 37 (47)
T ss_pred CcCCCCCeeEEEEchhhCcceEEEEEEECCCcCCCEE
Confidence 59999999865421 1 22278888898765
No 115
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.88 E-value=0.99 Score=40.98 Aligned_cols=91 Identities=24% Similarity=0.365 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612 171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS 250 (323)
Q Consensus 171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~ 250 (323)
.+...|.+|.+-+.+.++|..||.-+.. ..|+ -|.... -+...+++|-+. .-++-..+...+.|.|-
T Consensus 38 ~~~~la~ai~~~~~~i~~C~~C~~lse~------~~C~--IC~d~~---Rd~~~iCVVE~~--~Dv~aiE~~~~y~G~Yh 104 (195)
T TIGR00615 38 EVLRLAQALLEAKENLRTCSVCGAISDQ------EVCN--ICSDER---RDNSVICVVEDP--KDVFALEKTKEFRGRYH 104 (195)
T ss_pred HHHHHHHHHHHHHHcCCcCCCCCCCCCC------CcCC--CCCCCC---CCCCEEEEECCH--HHHHHHHhhCccceEEE
Confidence 3455689999999999999999977642 2354 454432 344566666553 33555566666789999
Q ss_pred ceeeecCC--CCCHHHHHHHHHHHHh
Q 020612 251 CIAGFIEP--GESLEEAVRRETWEET 274 (323)
Q Consensus 251 lPgG~VE~--GEs~eeAa~REv~EEt 274 (323)
+.+|.+.| |..+++--..++.+-.
T Consensus 105 VL~G~iSPldgigp~~l~i~~L~~Ri 130 (195)
T TIGR00615 105 VLGGHISPLDGIGPEDLTIAALLKRL 130 (195)
T ss_pred EccCccCccCCCChhhcCHHHHHHHH
Confidence 99999996 6677776666666554
No 116
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=83.11 E-value=1 Score=30.72 Aligned_cols=33 Identities=27% Similarity=0.686 Sum_probs=24.8
Q ss_pred HHHhhhccCCCCCCCCCCCeeccCCccccccCCCCC
Q 020612 178 ALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCK 213 (323)
Q Consensus 178 ~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~ 213 (323)
-|-.|.-...+||.||.|+.....| +..|+ .|+
T Consensus 9 LL~G~~ML~~~Cp~C~~PL~~~k~g-~~~Cv--~C~ 41 (41)
T PF06677_consen 9 LLQGWTMLDEHCPDCGTPLMRDKDG-KIYCV--SCG 41 (41)
T ss_pred HHHhHhHhcCccCCCCCeeEEecCC-CEECC--CCC
Confidence 3445777889999999999885555 46887 574
No 117
>PRK00076 recR recombination protein RecR; Reviewed
Probab=82.36 E-value=1.1 Score=40.68 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612 171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS 250 (323)
Q Consensus 171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~ 250 (323)
.+...|++|.+-+.+.++|..||.-+.. ..|+ -|.... -+..++++|-+. ..++-..+.+.+.|.|-
T Consensus 38 ~~~~la~~i~~~~~~i~~C~~C~~lse~------~~C~--IC~d~~---Rd~~~icVVE~~--~Dv~aiE~s~~y~G~Yh 104 (196)
T PRK00076 38 DVLRLAQALEEAKEKIKHCSVCGNLTEQ------DPCE--ICSDPR---RDQSLICVVESP--ADVLAIERTGEYRGLYH 104 (196)
T ss_pred HHHHHHHHHHHHHHcCCcCCCCCCcCCC------CcCC--CCCCCC---CCCCEEEEECCH--HHHHHHHhhCcCceEEE
Confidence 3455689999999999999999987753 2454 454432 344566766553 34555666666789999
Q ss_pred ceeeecCC--CCCHHHHHHHHHHHHh
Q 020612 251 CIAGFIEP--GESLEEAVRRETWEET 274 (323)
Q Consensus 251 lPgG~VE~--GEs~eeAa~REv~EEt 274 (323)
+.+|.+.| |-.+++--..++.+-.
T Consensus 105 VL~G~ispl~gi~p~~l~i~~L~~ri 130 (196)
T PRK00076 105 VLGGLLSPLDGIGPEDLNIDELLERL 130 (196)
T ss_pred EecCCcCCCCCCCccccCHHHHHHHH
Confidence 99999986 5566655555565555
No 118
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=82.05 E-value=1 Score=30.94 Aligned_cols=27 Identities=33% Similarity=0.679 Sum_probs=21.7
Q ss_pred CCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
-|+.||..+..........|| .||...
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp--~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCP--YCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCCceECC--CCCCeE
Confidence 499999998877666578997 798754
No 119
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=81.77 E-value=1.4 Score=39.96 Aligned_cols=92 Identities=22% Similarity=0.381 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612 171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS 250 (323)
Q Consensus 171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~ 250 (323)
.+-..|.+|.+-.+..++|+.||.-+... .|. -|.... -+..++++|-.+ .-++...+.+...|.|-
T Consensus 39 ~~~~la~al~~a~~~i~~C~~C~~~te~d------~C~--ICsd~~---Rd~~~icVVe~p--~Dv~a~E~~~~f~G~Yh 105 (198)
T COG0353 39 DVERLAKALLEAKENIKHCSVCGNLTESD------PCD--ICSDES---RDKSQLCVVEEP--KDVLALEKTGEFRGLYH 105 (198)
T ss_pred HHHHHHHHHHHHHhcCccccccCCcCCCC------cCc--CcCCcc---cCCceEEEEcch--HHHHHHHHhcccCeeEE
Confidence 45556899999999999999999877543 454 454332 344567777654 23444455556689999
Q ss_pred ceeeecCC--CCCHHHHHHHHHHHHhC
Q 020612 251 CIAGFIEP--GESLEEAVRRETWEETG 275 (323)
Q Consensus 251 lPgG~VE~--GEs~eeAa~REv~EEtG 275 (323)
+.+|.+.| |-.+++--.+++.+-..
T Consensus 106 VL~G~lspl~gigpe~l~i~~L~~Rl~ 132 (198)
T COG0353 106 VLGGLLSPLDGIGPEDLNIDELLQRLA 132 (198)
T ss_pred EecCccCcccCCCcccccHHHHHHHHh
Confidence 99999996 55777777777766543
No 120
>PRK00420 hypothetical protein; Validated
Probab=81.65 E-value=1.3 Score=36.75 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=21.4
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
....||.||.++.....| ..+|| .|+..
T Consensus 22 l~~~CP~Cg~pLf~lk~g-~~~Cp--~Cg~~ 49 (112)
T PRK00420 22 LSKHCPVCGLPLFELKDG-EVVCP--VHGKV 49 (112)
T ss_pred ccCCCCCCCCcceecCCC-ceECC--CCCCe
Confidence 459999999999875444 56787 68873
No 121
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=81.58 E-value=3.6 Score=36.63 Aligned_cols=49 Identities=22% Similarity=0.334 Sum_probs=37.3
Q ss_pred EEEEEeCC-CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCC
Q 020612 225 IMLVIDRE-NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276 (323)
Q Consensus 225 ivlV~~~~-~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL 276 (323)
.++|+.+. --+|||.+-. .-.+-+|||.+++||+-.+.++|-+-|-+|-
T Consensus 74 gvlivheH~lPHvLLLQig---~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 74 GVLIVHEHNLPHVLLLQIG---NTFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred eeEEEeecCCCeEEEEeeC---CEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 34444432 2467777654 3468899999999999999999999999993
No 122
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=81.11 E-value=0.93 Score=37.55 Aligned_cols=29 Identities=34% Similarity=0.738 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCeecc--CCccccccCCCCCCcc
Q 020612 186 SRFCGHCGEKTIPKE--AGKLKQCSNASCKKRI 216 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~--~g~~~~C~~~~C~~~~ 216 (323)
.+|||.||+-|.+.. .+....|. .|+...
T Consensus 2 m~FCp~Cgsll~p~~~~~~~~l~C~--kCgye~ 32 (113)
T COG1594 2 MRFCPKCGSLLYPKKDDEGGKLVCR--KCGYEE 32 (113)
T ss_pred ccccCCccCeeEEeEcCCCcEEECC--CCCcch
Confidence 689999999999865 45588997 798764
No 123
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=79.80 E-value=1.3 Score=26.69 Aligned_cols=24 Identities=29% Similarity=0.740 Sum_probs=20.6
Q ss_pred CCCCCCCCeeccCCccccccCCCCCC
Q 020612 189 CGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 189 C~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
|..||..+...+.+....|| .||.
T Consensus 1 C~sC~~~i~~r~~~v~f~CP--nCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCP--NCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCC--CCCC
Confidence 78899999988888889998 6874
No 124
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=77.82 E-value=0.7 Score=33.99 Aligned_cols=26 Identities=27% Similarity=0.727 Sum_probs=19.6
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.|++|+.||.+.... ...|+ +.|...
T Consensus 2 ~HkHC~~CG~~Ip~~----~~fCS-~~C~~~ 27 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD----ESFCS-PKCREE 27 (59)
T ss_pred CCCcCCcCCCcCCcc----hhhhC-HHHHHH
Confidence 589999999998754 66786 367643
No 125
>smart00532 LIGANc Ligase N family.
Probab=77.64 E-value=1.3 Score=45.06 Aligned_cols=31 Identities=23% Similarity=0.602 Sum_probs=25.5
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.-.+||.||+++...+++...+|+|+.|...
T Consensus 398 ~P~~CP~C~s~l~~~~~~~~~~C~n~~C~aq 428 (441)
T smart00532 398 MPTHCPSCGSELVREEGEVDIRCPNPLCPAQ 428 (441)
T ss_pred CCCCCCCCCCEeEecCCceEEEeCCCCCHHH
Confidence 3589999999998877777788998789643
No 126
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=77.20 E-value=4 Score=32.72 Aligned_cols=28 Identities=32% Similarity=0.731 Sum_probs=21.7
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
+|||.||..+.... ....|+ .|+.....
T Consensus 1 ~fC~~Cg~~l~~~~--~~~~C~--~C~~~~~~ 28 (104)
T TIGR01384 1 KFCPKCGSLMTPKN--GVYVCP--SCGYEKEK 28 (104)
T ss_pred CCCcccCcccccCC--CeEECc--CCCCcccc
Confidence 59999999997653 367897 79987543
No 127
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=76.95 E-value=1.7 Score=33.19 Aligned_cols=30 Identities=20% Similarity=0.554 Sum_probs=21.0
Q ss_pred CCCCCCCCCCeecc--------CCccccccCCCCCCcc
Q 020612 187 RFCGHCGEKTIPKE--------AGKLKQCSNASCKKRI 216 (323)
Q Consensus 187 ~fC~~CG~~~~~~~--------~g~~~~C~~~~C~~~~ 216 (323)
-+||.||++..... .....+|.|..||..+
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~~~~~Y~qC~N~eCg~tF 39 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATF 39 (72)
T ss_pred ccCCCCCCccEEEEChhcChhhheeeeecCCCCCCCEE
Confidence 47999999985431 2234478888999765
No 128
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=75.91 E-value=1.5 Score=37.30 Aligned_cols=25 Identities=28% Similarity=0.768 Sum_probs=19.0
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.+||.||.|+.. ..|. -.|| .|+..
T Consensus 29 ~hCp~Cg~PLF~-KdG~-v~CP--vC~~~ 53 (131)
T COG1645 29 KHCPKCGTPLFR-KDGE-VFCP--VCGYR 53 (131)
T ss_pred hhCcccCCccee-eCCe-EECC--CCCce
Confidence 479999999988 3443 4797 69973
No 129
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=75.68 E-value=2.1 Score=28.60 Aligned_cols=30 Identities=33% Similarity=0.709 Sum_probs=21.3
Q ss_pred CCCCCCCCCCeeccC--CccccccC-CCCCCcc
Q 020612 187 RFCGHCGEKTIPKEA--GKLKQCSN-ASCKKRI 216 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~--g~~~~C~~-~~C~~~~ 216 (323)
+.||.||++++...+ |.=..|++ |.|....
T Consensus 2 ~~CP~Cg~~lv~r~~k~g~F~~Cs~yP~C~~~~ 34 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKGKFLGCSNYPECKYTE 34 (39)
T ss_pred cCCCCCCceeEEEECCCCCEEECCCCCCcCCeE
Confidence 469999999987643 44457876 6676654
No 130
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=75.02 E-value=1.6 Score=46.54 Aligned_cols=29 Identities=24% Similarity=0.645 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
-.+||.||+++...+++...+|+|+.|..
T Consensus 392 P~~CP~C~s~l~~~~~~~~~~C~n~~C~a 420 (652)
T TIGR00575 392 PTHCPSCGSPLVKIEEEAVIRCPNLNCPA 420 (652)
T ss_pred CCCCCCCCCEeEecCCcEEEEECCCCCHH
Confidence 46899999999887788888999888954
No 131
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=74.73 E-value=1 Score=42.10 Aligned_cols=32 Identities=25% Similarity=0.659 Sum_probs=13.9
Q ss_pred hhhccCCCCCCCCCC-CeeccCC---ccccccCCCCCC
Q 020612 181 EWHNVSRFCGHCGEK-TIPKEAG---KLKQCSNASCKK 214 (323)
Q Consensus 181 ~W~~~~~fC~~CG~~-~~~~~~g---~~~~C~~~~C~~ 214 (323)
.|-..+-|||.||+. +....+. -...|+ .|+.
T Consensus 26 ~Wv~~n~yCP~Cg~~~L~~f~NN~PVaDF~C~--~C~e 61 (254)
T PF06044_consen 26 DWVAENMYCPNCGSKPLSKFENNRPVADFYCP--NCNE 61 (254)
T ss_dssp HHHHHH---TTT--SS-EE--------EEE-T--TT--
T ss_pred HHHHHCCcCCCCCChhHhhccCCCccceeECC--CCch
Confidence 599999999999999 5544332 234776 5864
No 132
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=73.67 E-value=2.3 Score=34.97 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=21.3
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
+-|.|+.||++-.-... .-.+|| .||..+-+
T Consensus 8 tKR~Cp~CG~kFYDLnk-~PivCP--~CG~~~~~ 38 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNK-DPIVCP--KCGTEFPP 38 (108)
T ss_pred CcccCCCCcchhccCCC-CCccCC--CCCCccCc
Confidence 46788888888765544 345686 78877644
No 133
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=72.34 E-value=1.9 Score=45.83 Aligned_cols=33 Identities=21% Similarity=0.624 Sum_probs=27.8
Q ss_pred cCCCCCCCCCCCeeccCCccccccC-CCCCCccc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSN-ASCKKRIY 217 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~-~~C~~~~y 217 (323)
--.+||.||+++...+++-..+|+| ..|.....
T Consensus 403 ~P~~CP~C~s~l~r~~~e~~~rC~n~~~C~aq~~ 436 (667)
T COG0272 403 FPTHCPVCGSELVREEGEVVIRCTNGLNCPAQLK 436 (667)
T ss_pred CCCCCCCCCCeeEeccCceeEecCCCCCChHHHh
Confidence 4668999999999989999999998 67976433
No 134
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=70.98 E-value=2.9 Score=26.79 Aligned_cols=28 Identities=32% Similarity=0.845 Sum_probs=14.0
Q ss_pred CCCCCCCCCee---ccCC--ccccccCCCCCCc
Q 020612 188 FCGHCGEKTIP---KEAG--KLKQCSNASCKKR 215 (323)
Q Consensus 188 fC~~CG~~~~~---~~~g--~~~~C~~~~C~~~ 215 (323)
.||+||--... .+.| ...+|.||.|...
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvfrcsnpacdye 35 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVFRCSNPACDYE 35 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEEEES-TT---E
T ss_pred cCCccCceEEEEeecCCCcEEEEEcCCCccccC
Confidence 59999977532 2333 3458998888653
No 135
>PRK10445 endonuclease VIII; Provisional
Probab=69.70 E-value=2.6 Score=39.82 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=21.8
Q ss_pred hhccCCCCCCCCCCCeeccCCccccccCCCCC
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCK 213 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~ 213 (323)
|++.-+-||+||.++....-+.+..+-||.|.
T Consensus 231 y~r~g~~Cp~Cg~~I~~~~~~gR~t~~CP~CQ 262 (263)
T PRK10445 231 FHRDGEACERCGGIIEKTTLSSRPFYWCPGCQ 262 (263)
T ss_pred eCCCCCCCCCCCCEeEEEEECCCCcEECCCCc
Confidence 45567899999999987654444433334786
No 136
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=69.38 E-value=2.5 Score=45.11 Aligned_cols=29 Identities=28% Similarity=0.699 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCeeccCCccccccCC-CCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNA-SCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~-~C~~ 214 (323)
-.+||.||+++...+++...+|+|+ .|..
T Consensus 404 P~~CP~Cgs~l~~~~~~~~~~C~n~~~C~a 433 (665)
T PRK07956 404 PTHCPVCGSELVRVEGEAVLRCTNGLSCPA 433 (665)
T ss_pred CCCCCCCCCEeEecCCCeEEECCCCCCCHH
Confidence 4689999999988788888899986 4953
No 137
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=69.12 E-value=3.3 Score=29.20 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=24.6
Q ss_pred HHHHhhhccCCCCCCCCCCCe--------eccCCccccccCCCCCCc
Q 020612 177 RALLEWHNVSRFCGHCGEKTI--------PKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~~--------~~~~g~~~~C~~~~C~~~ 215 (323)
...+.-.+.+-+||.||..-. ..+...+|.|. |++.
T Consensus 4 ~~~~~L~~kY~~Cp~CGN~~vGngEG~liV~edtfkRtCk---CGfn 47 (49)
T PF12677_consen 4 WKTLKLSNKYCKCPKCGNDKVGNGEGTLIVEEDTFKRTCK---CGFN 47 (49)
T ss_pred hhhcchhhhhccCcccCCcEeecCcceEEEeccceeeeec---cccc
Confidence 344444566899999998754 23556888995 8764
No 138
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=68.66 E-value=2.7 Score=36.44 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhcc------CCCCCCCCCCCeeccCCccccccCCCCCCcccCCc
Q 020612 169 DLAIAGHARALLEWHNV------SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRV 220 (323)
Q Consensus 169 ~~~~~~~A~~l~~W~~~------~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~ 220 (323)
...++..+++--.|+.- .-.|-+||..+.....+.-..|| .|+...|-|.
T Consensus 89 w~el~~d~~h~g~Y~sGE~~g~G~l~C~~Cg~~~~~~~~~~l~~Cp--~C~~~~F~R~ 144 (146)
T PF07295_consen 89 WAELAQDLEHHGVYHSGEVVGPGTLVCENCGHEVELTHPERLPPCP--KCGHTEFTRQ 144 (146)
T ss_pred HHHHHHHHHhcCCeecCcEecCceEecccCCCEEEecCCCcCCCCC--CCCCCeeeeC
Confidence 34444455555555543 45799999999999888888997 7999999774
No 139
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=68.46 E-value=3.7 Score=28.28 Aligned_cols=26 Identities=35% Similarity=0.874 Sum_probs=20.0
Q ss_pred CCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
-|+.||...... .+...+|+ .||...
T Consensus 4 ~C~~Cg~~~~~~-~~~~irC~--~CG~rI 29 (44)
T smart00659 4 ICGECGRENEIK-SKDVVRCR--ECGYRI 29 (44)
T ss_pred ECCCCCCEeecC-CCCceECC--CCCceE
Confidence 499999998765 45667897 698764
No 140
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=67.92 E-value=2.9 Score=44.57 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=10.8
Q ss_pred ccCCCCCCCCCCCe
Q 020612 184 NVSRFCGHCGEKTI 197 (323)
Q Consensus 184 ~~~~fC~~CG~~~~ 197 (323)
...+||++||.++.
T Consensus 13 ~~akFC~~CG~~l~ 26 (645)
T PRK14559 13 NNNRFCQKCGTSLT 26 (645)
T ss_pred CCCccccccCCCCC
Confidence 45788888888875
No 141
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=67.77 E-value=3.6 Score=26.48 Aligned_cols=26 Identities=38% Similarity=0.939 Sum_probs=18.0
Q ss_pred CCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
-|+.||+..... .+...+|+ .||...
T Consensus 2 ~C~~Cg~~~~~~-~~~~irC~--~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELK-PGDPIRCP--ECGHRI 27 (32)
T ss_dssp BESSSSSSE-BS-TSSTSSBS--SSS-SE
T ss_pred CCCcCCCeeEcC-CCCcEECC--cCCCeE
Confidence 399999998844 45567897 698764
No 142
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=67.66 E-value=2.5 Score=27.64 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=20.4
Q ss_pred CCCCCCCCCeec-----cCCccccccCCCCCCccc
Q 020612 188 FCGHCGEKTIPK-----EAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 188 fC~~CG~~~~~~-----~~g~~~~C~~~~C~~~~y 217 (323)
-||+||+..... ..+....|+ .|+...+
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~--~C~~~~~ 36 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCG--KCGHVWY 36 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECC--CCCCEEE
Confidence 499999986654 245567898 6998765
No 143
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=67.61 E-value=4 Score=24.99 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=16.2
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
+.||.||+... ...+.|+ .||..+
T Consensus 1 K~CP~C~~~V~----~~~~~Cp--~CG~~F 24 (26)
T PF10571_consen 1 KTCPECGAEVP----ESAKFCP--HCGYDF 24 (26)
T ss_pred CcCCCCcCCch----hhcCcCC--CCCCCC
Confidence 46888888773 3356786 687653
No 144
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=67.43 E-value=3.7 Score=27.76 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=18.0
Q ss_pred CCCCCCCCCee-ccCCccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIP-KEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~-~~~g~~~~C~~~~C~~~~ 216 (323)
.||.||++... ........|+ .||.+.
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~--~CG~Vl 29 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCP--NCGLVL 29 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEET--TT-BBE
T ss_pred CCcCCcCCceEEcCCCCeEECC--CCCCEe
Confidence 59999998733 3344555998 798754
No 145
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=67.27 E-value=2.3 Score=32.65 Aligned_cols=14 Identities=36% Similarity=1.009 Sum_probs=5.7
Q ss_pred cCCCCCCCCCCCee
Q 020612 185 VSRFCGHCGEKTIP 198 (323)
Q Consensus 185 ~~~fC~~CG~~~~~ 198 (323)
.-.|||.||.++-.
T Consensus 23 ~k~FCp~CGn~TL~ 36 (73)
T PF08772_consen 23 TKQFCPKCGNATLK 36 (73)
T ss_dssp S--S-SSS--S--E
T ss_pred CceeCcccCCCcce
Confidence 46799999999754
No 146
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=66.46 E-value=4.9 Score=27.60 Aligned_cols=35 Identities=23% Similarity=0.574 Sum_probs=23.4
Q ss_pred HHHHhhhccCCCCCCCCCCCeecc-CCccccccCCCCCC
Q 020612 177 RALLEWHNVSRFCGHCGEKTIPKE-AGKLKQCSNASCKK 214 (323)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~~~~~-~g~~~~C~~~~C~~ 214 (323)
..-+.|-.... ||+||+...... ......|. .|+.
T Consensus 10 l~~~RW~~g~~-CP~Cg~~~~~~~~~~~~~~C~--~C~~ 45 (46)
T PF12760_consen 10 LEEIRWPDGFV-CPHCGSTKHYRLKTRGRYRCK--ACRK 45 (46)
T ss_pred HHHhcCCCCCC-CCCCCCeeeEEeCCCCeEECC--CCCC
Confidence 34467888844 999999744433 34666886 6764
No 147
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=66.18 E-value=2.9 Score=29.63 Aligned_cols=30 Identities=23% Similarity=0.588 Sum_probs=24.0
Q ss_pred CCCCCCCCCeeccCCccccccCCCCCCcccCC
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr 219 (323)
-|.+||+..........-+|+ .||...+-+
T Consensus 8 ~C~~Cg~~~~~~~~~~~irCp--~Cg~rIl~K 37 (49)
T COG1996 8 KCARCGREVELDQETRGIRCP--YCGSRILVK 37 (49)
T ss_pred EhhhcCCeeehhhccCceeCC--CCCcEEEEe
Confidence 499999999777788888998 799875433
No 148
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=65.96 E-value=3.1 Score=37.43 Aligned_cols=30 Identities=17% Similarity=0.533 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcccCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr 219 (323)
+-.|++||++|.. .+....|| .|+...-.+
T Consensus 149 ~A~CsrC~~~L~~--~~~~l~Cp--~Cg~tEkRK 178 (188)
T COG1096 149 YARCSRCRAPLVK--KGNMLKCP--NCGNTEKRK 178 (188)
T ss_pred EEEccCCCcceEE--cCcEEECC--CCCCEEeee
Confidence 4579999999998 88889998 699876444
No 149
>PRK10880 adenine DNA glycosylase; Provisional
Probab=65.93 E-value=9.8 Score=37.59 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee
Q 020612 233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278 (323)
Q Consensus 233 ~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v 278 (323)
++++||.||.. ...|+|+||. ++.. + ..++..|+.|+..
T Consensus 241 ~~~~~l~~r~~~gl~~gl~~fP~--~~~~----~-~~~~~~~~~~~~~ 281 (350)
T PRK10880 241 GDEVWLEQRPPSGLWGGLFCFPQ--FADE----E-ELRQWLAQRGIAA 281 (350)
T ss_pred CCEEEEEECCccChhhccccCCC--Ccch----h-hHHHHHHhcCCch
Confidence 58999999864 5689999996 2321 1 2455667888753
No 150
>PRK11032 hypothetical protein; Provisional
Probab=65.53 E-value=3.3 Score=36.47 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcccCCc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRV 220 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~ 220 (323)
.--|-+||..+.....+.-..|| .|+...|-|.
T Consensus 124 ~LvC~~Cg~~~~~~~p~~i~pCp--~C~~~~F~R~ 156 (160)
T PRK11032 124 NLVCEKCHHHLAFYTPEVLPLCP--KCGHDQFQRR 156 (160)
T ss_pred eEEecCCCCEEEecCCCcCCCCC--CCCCCeeeeC
Confidence 45799999999999999999998 7999999774
No 151
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=64.32 E-value=4 Score=33.92 Aligned_cols=22 Identities=32% Similarity=0.798 Sum_probs=17.8
Q ss_pred CCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 189 CGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 189 C~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
||.||+++... +..|+ .|+...
T Consensus 1 CPvCg~~l~vt----~l~C~--~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVVT----RLKCP--SCGTEI 22 (113)
T ss_pred CCCCCCceEEE----EEEcC--CCCCEE
Confidence 99999999765 67897 688754
No 152
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=64.26 E-value=4.6 Score=39.16 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=22.7
Q ss_pred hhhccCCCCCCCCCCCeec--------cCCccccccCCCCCCcc-cCCc
Q 020612 181 EWHNVSRFCGHCGEKTIPK--------EAGKLKQCSNASCKKRI-YPRV 220 (323)
Q Consensus 181 ~W~~~~~fC~~CG~~~~~~--------~~g~~~~C~~~~C~~~~-ypr~ 220 (323)
.|...+.+||.||++-... ++.+-..|. -|++.+ |+|+
T Consensus 179 ~~~~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~Cs--lC~teW~~~R~ 225 (305)
T TIGR01562 179 ETRESRTLCPACGSPPVASMVRQGGKETGLRYLSCS--LCATEWHYVRV 225 (305)
T ss_pred cccCCCCcCCCCCChhhhhhhcccCCCCCceEEEcC--CCCCcccccCc
Confidence 3555678999999995321 122333554 677653 5553
No 153
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=64.22 E-value=4.1 Score=38.60 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=21.0
Q ss_pred hhccCCCCCCCCCCCeeccCCccc--cccCCCCCC
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLK--QCSNASCKK 214 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~--~C~~~~C~~ 214 (323)
+.+..+-|++||++.....-+.+. .|| .|..
T Consensus 241 y~R~g~pC~~Cg~~I~~~~~~gR~t~~CP--~CQ~ 273 (274)
T PRK01103 241 YGREGEPCRRCGTPIEKIKQGGRSTFFCP--RCQK 273 (274)
T ss_pred cCCCCCCCCCCCCeeEEEEECCCCcEECc--CCCC
Confidence 334557899999998766544344 565 7974
No 154
>PF14443 DBC1: DBC1
Probab=64.15 E-value=34 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=31.7
Q ss_pred eEEEEeecc---CCCCccc--ceeeecCCC-CCHHHHHHHHHHHHhCCeec
Q 020612 235 RVLLSRQSR---FVPRMWS--CIAGFIEPG-ESLEEAVRRETWEETGIEVG 279 (323)
Q Consensus 235 riLL~rr~~---~~~g~w~--lPgG~VE~G-Es~eeAa~REv~EEtGL~v~ 279 (323)
++|+.++.+ --+|.|+ +=||-.+.+ .++..+|+|=++|-|||+..
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 455555543 1257786 446666653 47899999999999999874
No 155
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=64.08 E-value=2.9 Score=42.13 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=29.7
Q ss_pred HHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 177 RALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
..|..|-..+.-||.||..|...-.+ -.+|+ .|++..
T Consensus 341 ~~l~~~~~~~p~Cp~Cg~~m~S~G~~-g~rC~--kCg~~~ 377 (421)
T COG1571 341 LKLARYERVNPVCPRCGGRMKSAGRN-GFRCK--KCGTRA 377 (421)
T ss_pred EEeeeeEEcCCCCCccCCchhhcCCC-Ccccc--cccccC
Confidence 34566888888999999999887665 77897 799765
No 156
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=64.06 E-value=6.4 Score=28.47 Aligned_cols=28 Identities=36% Similarity=0.629 Sum_probs=19.1
Q ss_pred CCCCCCCCCCeec--cC----CccccccCCCCCCcc
Q 020612 187 RFCGHCGEKTIPK--EA----GKLKQCSNASCKKRI 216 (323)
Q Consensus 187 ~fC~~CG~~~~~~--~~----g~~~~C~~~~C~~~~ 216 (323)
-+||.||.++... +. -.-..|| .|..+.
T Consensus 5 i~CP~CgnKTR~kir~DT~LkNfPlyCp--KCK~Et 38 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTVLKNFPLYCP--KCKQET 38 (55)
T ss_pred EECCCCCCccceeeecCceeccccccCC--CCCceE
Confidence 4799999998543 21 2344887 788765
No 157
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=63.46 E-value=9.6 Score=37.05 Aligned_cols=34 Identities=24% Similarity=0.606 Sum_probs=20.0
Q ss_pred cCCCCCCCCCCCeec-------cCCccccccCCCCCCcc-cCCc
Q 020612 185 VSRFCGHCGEKTIPK-------EAGKLKQCSNASCKKRI-YPRV 220 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~-------~~g~~~~C~~~~C~~~~-ypr~ 220 (323)
...+||.||+.-... ++.+-..|. -|++.+ |+|+
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~Cs--lC~teW~~~R~ 227 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCN--LCESEWHVVRV 227 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcC--CCCCcccccCc
Confidence 468999999995322 222333554 677653 5543
No 158
>PHA00626 hypothetical protein
Probab=63.15 E-value=5.8 Score=28.92 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=18.2
Q ss_pred CCCCCCCCCeeccC-----CccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIPKEA-----GKLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~~~~-----g~~~~C~~~~C~~~~ 216 (323)
.||.||+......+ -..-.|+ .|++.+
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCk--dCGY~f 33 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCC--DCGYND 33 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcC--CCCCee
Confidence 69999997655422 2334787 798765
No 159
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=62.80 E-value=5 Score=31.82 Aligned_cols=29 Identities=24% Similarity=0.683 Sum_probs=23.4
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.-.-||.||.+++...+---+.|. .|+..
T Consensus 34 ~~~~Cp~C~~~~VkR~a~GIW~C~--kCg~~ 62 (89)
T COG1997 34 AKHVCPFCGRTTVKRIATGIWKCR--KCGAK 62 (89)
T ss_pred cCCcCCCCCCcceeeeccCeEEcC--CCCCe
Confidence 344699999999888877778897 79875
No 160
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=62.21 E-value=5.8 Score=33.63 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=21.1
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
+.|-||.||++..-... .-.+|| .||..+
T Consensus 8 tKr~Cp~cg~kFYDLnk-~p~vcP--~cg~~~ 36 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNR-RPAVSP--YTGEQF 36 (129)
T ss_pred ccccCCCcCccccccCC-CCccCC--CcCCcc
Confidence 56789999998765543 455786 788874
No 161
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=61.89 E-value=3.7 Score=26.07 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=13.7
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.-||.||+.... ..|....|+ .|+.+
T Consensus 3 p~Cp~C~se~~y-~D~~~~vCp--~C~~e 28 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLVCP--ECGHE 28 (30)
T ss_dssp ---TTT-----E-E-SSSEEET--TTTEE
T ss_pred CCCCCCCCccee-ccCCEEeCC--ccccc
Confidence 459999999876 577788997 79865
No 162
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=60.89 E-value=4.2 Score=39.04 Aligned_cols=34 Identities=32% Similarity=0.701 Sum_probs=25.6
Q ss_pred Hhhhc----cCCCCCCCC-CCCeeccCCccccccCCCCCCc
Q 020612 180 LEWHN----VSRFCGHCG-EKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 180 ~~W~~----~~~fC~~CG-~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
..|.- +.+||+.|| ..+....+|..+.|| .|+..
T Consensus 305 ~t~~~~r~~k~nfc~ncG~~~t~~~~ng~a~fcp--~cgq~ 343 (345)
T COG4260 305 ATWPCARCAKLNFCLNCGCGTTADFDNGKAKFCP--ECGQG 343 (345)
T ss_pred ccCcchhccccccccccCcccccCCccchhhhCh--hhcCC
Confidence 45664 677999999 555557889999998 69753
No 163
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=60.48 E-value=5.1 Score=38.14 Aligned_cols=30 Identities=17% Similarity=0.522 Sum_probs=20.5
Q ss_pred hhccCCCCCCCCCCCeeccCCccc--cccCCCCC
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLK--QCSNASCK 213 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~--~C~~~~C~ 213 (323)
+.+.-+-|++||++.....-+.+. .|| .|.
T Consensus 250 y~R~g~pC~~Cg~~I~~~~~~gR~t~~CP--~CQ 281 (282)
T PRK13945 250 YRRTGKPCRKCGTPIERIKLAGRSTHWCP--NCQ 281 (282)
T ss_pred eCCCcCCCCcCCCeeEEEEECCCccEECC--CCc
Confidence 344567999999998765433344 565 786
No 164
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=60.07 E-value=4.7 Score=43.16 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=22.9
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.-.+||.||+++.. .+...+|+|+.|...
T Consensus 397 ~P~~CP~C~s~l~~--~~~~~~C~n~~C~aq 425 (669)
T PRK14350 397 IPDNCPSCKTALIK--EGAHLFCVNNHCPSV 425 (669)
T ss_pred CCCCCCCCCCEeee--CCEEEEECCCCCHHH
Confidence 36799999999975 466788998889653
No 165
>PHA02942 putative transposase; Provisional
Probab=59.98 E-value=5.9 Score=39.51 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=22.2
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
+.+.||.||+... ...+....|+ .||..+
T Consensus 324 TSq~Cs~CG~~~~-~l~~r~f~C~--~CG~~~ 352 (383)
T PHA02942 324 SSVSCPKCGHKMV-EIAHRYFHCP--SCGYEN 352 (383)
T ss_pred CCccCCCCCCccC-cCCCCEEECC--CCCCEe
Confidence 6899999999875 2345567997 699875
No 166
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=59.98 E-value=5.2 Score=37.94 Aligned_cols=30 Identities=13% Similarity=0.373 Sum_probs=20.7
Q ss_pred hhccCCCCCCCCCCCeeccCCccc--cccCCCCC
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLK--QCSNASCK 213 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~--~C~~~~C~ 213 (323)
|.+.-+-|++||.+.....-+.+. .|| .|.
T Consensus 240 y~R~g~pCprCG~~I~~~~~~gR~t~~CP--~CQ 271 (272)
T PRK14810 240 YQRTGEPCLNCKTPIRRVVVAGRSSHYCP--HCQ 271 (272)
T ss_pred cCCCCCcCCCCCCeeEEEEECCCccEECc--CCc
Confidence 345568999999998765443344 565 786
No 167
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=59.16 E-value=6.3 Score=25.86 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=21.3
Q ss_pred CCCCCCCCCeec-----cCCccccccCCCCCCccc
Q 020612 188 FCGHCGEKTIPK-----EAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 188 fC~~CG~~~~~~-----~~g~~~~C~~~~C~~~~y 217 (323)
-||+|+++.... ..|.+.+|+ .|+..++
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~--~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCS--KCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECC--CCCCEeC
Confidence 499999997643 467788998 6987653
No 168
>COG4640 Predicted membrane protein [Function unknown]
Probab=58.76 E-value=5.5 Score=39.82 Aligned_cols=25 Identities=32% Similarity=0.876 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
++||+.||+.- .+...+|+ .||...
T Consensus 1 M~fC~kcG~qk----~Ed~~qC~--qCG~~~ 25 (465)
T COG4640 1 MKFCPKCGSQK----AEDDVQCT--QCGHKF 25 (465)
T ss_pred CCccccccccc----cccccccc--ccCCcC
Confidence 58999999533 22334587 788643
No 169
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.23 E-value=5.7 Score=37.64 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=20.1
Q ss_pred hhccCCCCCCCCCCCeeccCCccc--cccCCCCC
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLK--QCSNASCK 213 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~--~C~~~~C~ 213 (323)
+.+.-+-|++||.+.....-+.+. .|| .|.
T Consensus 241 y~r~g~pC~~Cg~~I~~~~~~gR~t~~CP--~CQ 272 (272)
T TIGR00577 241 YGRKGEPCRRCGTPIEKIKVGGRGTHFCP--QCQ 272 (272)
T ss_pred eCCCCCCCCCCCCeeEEEEECCCCCEECC--CCC
Confidence 344457999999998776544344 565 784
No 170
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=57.96 E-value=6.2 Score=26.38 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=20.4
Q ss_pred CCCCCCCCCeeccCC--ccccccCCCCCCcccC
Q 020612 188 FCGHCGEKTIPKEAG--KLKQCSNASCKKRIYP 218 (323)
Q Consensus 188 fC~~CG~~~~~~~~g--~~~~C~~~~C~~~~yp 218 (323)
.||+|+..+.....+ ....|+ .|+-..|.
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~--~C~G~W~d 31 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCP--SCGGIWFD 31 (41)
T ss_pred CcCCCCcccceEEECCEEEEECC--CCCeEEcc
Confidence 599999998765433 344676 79877664
No 171
>PRK11827 hypothetical protein; Provisional
Probab=57.00 E-value=8 Score=28.55 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.4
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCcccCCcc
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVD 221 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~ 221 (323)
--||.|.+++..........|. .|+ ..||-.+
T Consensus 9 LaCP~ckg~L~~~~~~~~Lic~--~~~-laYPI~d 40 (60)
T PRK11827 9 IACPVCNGKLWYNQEKQELICK--LDN-LAFPLRD 40 (60)
T ss_pred eECCCCCCcCeEcCCCCeEECC--ccC-eeccccC
Confidence 4599999999987777778897 575 5667544
No 172
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.36 E-value=5.6 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.550 Sum_probs=20.5
Q ss_pred CCCCCCCCCeec-----cCCccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIPK-----EAGKLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~~-----~~g~~~~C~~~~C~~~~ 216 (323)
-||+|++..... .+|.+.+|+ .|+..+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~--~C~~~f 35 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCP--KCGHVF 35 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECC--CCCcEe
Confidence 499999997643 457788998 798764
No 173
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=56.09 E-value=7 Score=31.69 Aligned_cols=27 Identities=26% Similarity=0.598 Sum_probs=19.6
Q ss_pred CCCCCCCCCCeeccCCc--cccccCCCCCCc
Q 020612 187 RFCGHCGEKTIPKEAGK--LKQCSNASCKKR 215 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~--~~~C~~~~C~~~ 215 (323)
.|||.||.-+....++. +..|. .|...
T Consensus 2 ~FCP~Cgn~Live~g~~~~rf~C~--tCpY~ 30 (105)
T KOG2906|consen 2 LFCPTCGNMLIVESGESCNRFSCR--TCPYV 30 (105)
T ss_pred cccCCCCCEEEEecCCeEeeEEcC--CCCce
Confidence 69999999998776664 44565 56543
No 174
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=56.05 E-value=6.6 Score=37.17 Aligned_cols=32 Identities=19% Similarity=0.448 Sum_probs=21.6
Q ss_pred hhccCCCCCCCCCCCeeccCCcc--ccccCCCCCCc
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKL--KQCSNASCKKR 215 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~--~~C~~~~C~~~ 215 (323)
|.+.-+-|++||.+.....-+.+ -.|| .|...
T Consensus 231 y~R~g~pC~~Cg~~I~~~~~~gR~ty~Cp--~CQ~~ 264 (269)
T PRK14811 231 YGREGQPCPRCGTPIEKIVVGGRGTHFCP--QCQPL 264 (269)
T ss_pred cCCCcCCCCcCCCeeEEEEECCCCcEECC--CCcCC
Confidence 44556789999999876543333 3676 78754
No 175
>PRK10220 hypothetical protein; Provisional
Probab=55.41 E-value=10 Score=31.33 Aligned_cols=32 Identities=16% Similarity=0.438 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcccCCc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRV 220 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~ 220 (323)
..-||+|++......+. ...|| .|+.++-|.-
T Consensus 3 lP~CP~C~seytY~d~~-~~vCp--eC~hEW~~~~ 34 (111)
T PRK10220 3 LPHCPKCNSEYTYEDNG-MYICP--ECAHEWNDAE 34 (111)
T ss_pred CCcCCCCCCcceEcCCC-eEECC--cccCcCCccc
Confidence 35799999998766544 58998 8999887764
No 176
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=55.21 E-value=8.5 Score=26.61 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=22.0
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
+.-+-||.||.-. +-+...|.|..|+...
T Consensus 9 RGirkCp~CGt~N----G~R~~~CKN~~C~~~~ 37 (44)
T PF14952_consen 9 RGIRKCPKCGTYN----GTRGLSCKNKSCPQVF 37 (44)
T ss_pred hccccCCcCcCcc----CcccccccCCccchhh
Confidence 4568899999865 5556789998898653
No 177
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=54.90 E-value=5.6 Score=37.35 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=23.8
Q ss_pred HhhhccCCCCCCCCCCCeeccCCccccccCCCCCCccc
Q 020612 180 LEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 180 ~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
..|.-+.+-|+.||. ..+....|+ .||..+-
T Consensus 303 ~~~~~tS~~C~~cg~-----~~~r~~~C~--~cg~~~~ 333 (364)
T COG0675 303 VPPYYTSKTCPCCGH-----LSGRLFKCP--RCGFVHD 333 (364)
T ss_pred CCCCCCcccccccCC-----ccceeEECC--CCCCeeh
Confidence 346778899999999 446667897 7998653
No 178
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=54.52 E-value=5.3 Score=38.05 Aligned_cols=33 Identities=24% Similarity=0.706 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCeec----cC--C-ccccccCCCCCCcc-cCCc
Q 020612 186 SRFCGHCGEKTIPK----EA--G-KLKQCSNASCKKRI-YPRV 220 (323)
Q Consensus 186 ~~fC~~CG~~~~~~----~~--g-~~~~C~~~~C~~~~-ypr~ 220 (323)
+.+||.||++-... .. | +...|+ -|++.+ |+|+
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs--~C~t~W~~~R~ 212 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCS--LCGTEWRFVRI 212 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEET--TT--EEE--TT
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcC--CCCCeeeecCC
Confidence 47999999995432 11 3 333564 677653 5543
No 179
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=54.39 E-value=7.2 Score=32.96 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCeecc
Q 020612 186 SRFCGHCGEKTIPKE 200 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~ 200 (323)
+.||+.||+++....
T Consensus 69 r~FC~~CGs~l~~~~ 83 (133)
T COG3791 69 RGFCPTCGSPLFWRG 83 (133)
T ss_pred CeecccCCCceEEec
Confidence 449999999997653
No 180
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=53.82 E-value=25 Score=32.09 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=48.2
Q ss_pred ccCCCCCCCCCCCeecc-------CC----ccccccCCCCCCcccC-----CcccEEEEEEEeC-CCCeEEEEeeccCCC
Q 020612 184 NVSRFCGHCGEKTIPKE-------AG----KLKQCSNASCKKRIYP-----RVDPVVIMLVIDR-ENDRVLLSRQSRFVP 246 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~-------~g----~~~~C~~~~C~~~~yp-----r~~pvVivlV~~~-~~~riLL~rr~~~~~ 246 (323)
..+--||.||+.+.... -| ....|. .||+++.. ...|.-+.+-++. ++-+.+++|...
T Consensus 12 ~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~--~CgYR~~DV~~~e~~eP~r~~lkve~~edL~~~V~RS~s--- 86 (201)
T COG1779 12 ETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCE--RCGYRSTDVKTLEEREPRRYTLKVESEEDLSARVVRSKS--- 86 (201)
T ss_pred eeeecCCcccceeeEEEeeecCCccceEEEEEEEcc--ccCCcccceeecccCCCeEEEEEeCCHHHhhhheeecCC---
Confidence 34557999999665421 12 344786 69987543 2345444444443 334666666552
Q ss_pred Ccccce--eeecCCCC------CHHHHHHHHHHHHhCC
Q 020612 247 RMWSCI--AGFIEPGE------SLEEAVRRETWEETGI 276 (323)
Q Consensus 247 g~w~lP--gG~VE~GE------s~eeAa~REv~EEtGL 276 (323)
+.-.+| |=.|+||. |-.+.+.+-+.|++..
T Consensus 87 ~~I~IPELg~~iePG~~s~G~ITtIEGvL~rv~e~l~~ 124 (201)
T COG1779 87 ATIYIPELGLEIEPGPASEGFITTIEGVLERVYEVLET 124 (201)
T ss_pred ccEEcccCceEeccccccCceEehHHHHHHHHHHHHHH
Confidence 444454 33344432 4556666666666554
No 181
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=53.53 E-value=4.5 Score=33.56 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
.--||+.||+-+....+.+.-.|. .|+..+-+
T Consensus 6 ~~~FC~~CG~ll~~~~~~~~~~C~--~Ck~~~~v 37 (116)
T KOG2907|consen 6 DLDFCSDCGSLLEEPSAQSTVLCI--RCKIEYPV 37 (116)
T ss_pred CcchhhhhhhhcccccccCceEec--cccccCCH
Confidence 457999999999988888888898 68876643
No 182
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=52.51 E-value=11 Score=32.64 Aligned_cols=34 Identities=24% Similarity=0.705 Sum_probs=21.9
Q ss_pred CCCCCCCCCee------ccCC----ccccccCCCCCCc--ccCCcccE
Q 020612 188 FCGHCGEKTIP------KEAG----KLKQCSNASCKKR--IYPRVDPV 223 (323)
Q Consensus 188 fC~~CG~~~~~------~~~g----~~~~C~~~~C~~~--~ypr~~pv 223 (323)
.||.||+.-.. .+.| +++.|. .|+.. .|-++...
T Consensus 2 ~CP~C~~~dtkViDSR~~~dg~~IRRRReC~--~C~~RFTTyErve~~ 47 (147)
T TIGR00244 2 HCPFCQHHNTRVLDSRLVEDGQSIRRRRECL--ECHERFTTFERAELL 47 (147)
T ss_pred CCCCCCCCCCEeeeccccCCCCeeeecccCC--ccCCccceeeecccc
Confidence 59999996432 2333 567897 79875 46665533
No 183
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=52.42 E-value=16 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcccCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr 219 (323)
..-||.|.+......++ ...|| .|...+-+.
T Consensus 3 lp~cp~c~sEytYed~~-~~~cp--ec~~ew~~~ 33 (112)
T COG2824 3 LPPCPKCNSEYTYEDGG-QLICP--ECAHEWNEN 33 (112)
T ss_pred CCCCCccCCceEEecCc-eEeCc--hhccccccc
Confidence 45799999999888777 88998 799887654
No 184
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.86 E-value=1.8 Score=37.87 Aligned_cols=23 Identities=39% Similarity=1.001 Sum_probs=18.3
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.++.||.+||++|.. .|| .|+..
T Consensus 26 ~~~~fC~kCG~~tI~-------~Cp--~C~~~ 48 (158)
T PF10083_consen 26 LREKFCSKCGAKTIT-------SCP--NCSTP 48 (158)
T ss_pred HHHHHHHHhhHHHHH-------HCc--CCCCC
Confidence 567899999999864 587 68764
No 185
>PF14353 CpXC: CpXC protein
Probab=49.85 E-value=31 Score=28.55 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=26.0
Q ss_pred CCCCCCCCCeec-----c------------CC--ccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEE
Q 020612 188 FCGHCGEKTIPK-----E------------AG--KLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLS 239 (323)
Q Consensus 188 fC~~CG~~~~~~-----~------------~g--~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~ 239 (323)
-||+||++.... . .| ..-.|| .||...+.... .+..+. +.++++.
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP--~Cg~~~~~~~p----~lY~D~-~~~~~i~ 66 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCP--SCGHKFRLEYP----LLYHDP-EKKFMIY 66 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECC--CCCCceecCCC----EEEEcC-CCCEEEE
Confidence 599999996531 1 12 244776 79988754322 334444 3555553
No 186
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=49.55 E-value=11 Score=31.07 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCcccCC
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr 219 (323)
.-||+|++......+. ...|| .|+.++-+.
T Consensus 3 p~CP~C~seytY~dg~-~~iCp--eC~~EW~~~ 32 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGT-QLICP--SCLYEWNEN 32 (109)
T ss_pred CcCCcCCCcceEecCC-eeECc--ccccccccc
Confidence 4699999998866544 58998 899988665
No 187
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=49.06 E-value=8.8 Score=34.35 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=12.4
Q ss_pred ccCCCCCCCCCCCeec
Q 020612 184 NVSRFCGHCGEKTIPK 199 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~ 199 (323)
-.+.|||.||+++...
T Consensus 151 ~~~~~Cp~CG~~~~~~ 166 (177)
T COG1439 151 EPKDFCPICGSPLKRK 166 (177)
T ss_pred CCCCcCCCCCCceEEe
Confidence 3578999999997643
No 188
>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.
Probab=48.94 E-value=10 Score=26.69 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=21.7
Q ss_pred ccCCCCC--CCCCCCeeccCCccccccCCCCCC
Q 020612 184 NVSRFCG--HCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 184 ~~~~fC~--~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
+..+.|| +||.-..+.+-..+..|. .|+.
T Consensus 16 r~rk~CP~~~CG~GvFMA~H~dR~~CG--KCg~ 46 (47)
T PF01599_consen 16 RLRKECPSPRCGAGVFMAEHKDRHYCG--KCGY 46 (47)
T ss_dssp ESSEE-TSTTTTSSSEEEE-SSEEEET--TTSS
T ss_pred EhhhcCCCcccCCceEeeecCCCccCC--Cccc
Confidence 4578999 999988887777788886 6874
No 189
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=48.80 E-value=27 Score=29.55 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=27.7
Q ss_pred HHHHHHhhhccCCCCCCCCCCCeeccCC-----ccccccCCCCCCcc
Q 020612 175 HARALLEWHNVSRFCGHCGEKTIPKEAG-----KLKQCSNASCKKRI 216 (323)
Q Consensus 175 ~A~~l~~W~~~~~fC~~CG~~~~~~~~g-----~~~~C~~~~C~~~~ 216 (323)
.|..-..|+....+||.|++......++ -+..|+ +|+...
T Consensus 19 ~~~~~~~~~~~~~~cP~C~s~~~~k~g~~~~~~qRyrC~--~C~~tf 63 (129)
T COG3677 19 DAAYAIRMQITKVNCPRCKSSNVVKIGGIRRGHQRYKCK--SCGSTF 63 (129)
T ss_pred HHHHHHhhhcccCcCCCCCccceeeECCccccccccccC--CcCcce
Confidence 3444567899999999999999433332 233787 798754
No 190
>PRK12495 hypothetical protein; Provisional
Probab=47.90 E-value=11 Score=34.95 Aligned_cols=30 Identities=17% Similarity=0.606 Sum_probs=22.2
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCccc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
-...+|+.||.|+-.. ....+|+ .|+..+-
T Consensus 40 msa~hC~~CG~PIpa~--pG~~~Cp--~CQ~~~~ 69 (226)
T PRK12495 40 MTNAHCDECGDPIFRH--DGQEFCP--TCQQPVT 69 (226)
T ss_pred cchhhcccccCcccCC--CCeeECC--CCCCccc
Confidence 4567999999999843 4456787 7987654
No 191
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=47.84 E-value=35 Score=29.13 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=9.6
Q ss_pred cccEEEEEEEeCCCCeEE
Q 020612 220 VDPVVIMLVIDRENDRVL 237 (323)
Q Consensus 220 ~~pvVivlV~~~~~~riL 237 (323)
..|.++++|--++++++|
T Consensus 82 ~~P~viaiV~l~~~~~i~ 99 (140)
T COG1545 82 EEPYVIAIVELEEGGRIL 99 (140)
T ss_pred CCCEEEEEEEeCCCCceE
Confidence 356666666554444344
No 192
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=46.85 E-value=18 Score=24.56 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=12.1
Q ss_pred cceeeecCCCCCHHHHHHHHHHHHh
Q 020612 250 SCIAGFIEPGESLEEAVRRETWEET 274 (323)
Q Consensus 250 ~lPgG~VE~GEs~eeAa~REv~EEt 274 (323)
.+.||..-||--+...+.||+-||.
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 5779999999999999999999995
No 193
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=46.22 E-value=15 Score=23.76 Aligned_cols=29 Identities=21% Similarity=0.570 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
.+-|..||+............|. .|+..+
T Consensus 3 ~~~C~~C~~~~i~~~~~~~~~C~--~Cg~~~ 31 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNKEDDYEVCI--FCGSSF 31 (33)
T ss_pred ceEcCCCCCCeEEEecCCeEEcc--cCCcEe
Confidence 45799999999885555667887 688754
No 194
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=44.94 E-value=41 Score=31.05 Aligned_cols=25 Identities=24% Similarity=0.682 Sum_probs=18.7
Q ss_pred CCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 189 CGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 189 C~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
|+.||.++..... ..|+ .|-...++
T Consensus 1 C~~CG~~~~~~~~---~lC~--~C~~~~~~ 25 (236)
T PF04981_consen 1 CPRCGREIEPLID---GLCP--DCYLKRFD 25 (236)
T ss_pred CCCCCCCCCCccc---ccCh--HHhcccCC
Confidence 9999998876544 4786 68777765
No 195
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=44.88 E-value=9.6 Score=33.69 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=24.7
Q ss_pred hhcc-CCCCCCCCCCCeeccCCc---------------cccccCCCCCCcccCC
Q 020612 182 WHNV-SRFCGHCGEKTIPKEAGK---------------LKQCSNASCKKRIYPR 219 (323)
Q Consensus 182 W~~~-~~fC~~CG~~~~~~~~g~---------------~~~C~~~~C~~~~ypr 219 (323)
|... ..-||.|+.++.....+. -..|+ .|+..+|+-
T Consensus 92 ~~~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~--~CgkiYW~G 143 (165)
T COG1656 92 RLFPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCP--KCGKIYWKG 143 (165)
T ss_pred hcccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECC--CCcccccCc
Confidence 4444 788999999997653332 12587 799988763
No 196
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=44.48 E-value=14 Score=26.92 Aligned_cols=23 Identities=35% Similarity=0.827 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
...|+.||+..... ..|+ .||.+
T Consensus 27 l~~C~~CG~~~~~H-----~vC~--~CG~Y 49 (57)
T PRK12286 27 LVECPNCGEPKLPH-----RVCP--SCGYY 49 (57)
T ss_pred ceECCCCCCccCCe-----EECC--CCCcC
Confidence 46799999998764 5786 68844
No 197
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=43.98 E-value=42 Score=31.99 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=17.8
Q ss_pred CCCeEEEEeecc--CCCCccccee
Q 020612 232 ENDRVLLSRQSR--FVPRMWSCIA 253 (323)
Q Consensus 232 ~~~riLL~rr~~--~~~g~w~lPg 253 (323)
.++++||.||.. ...|+|+||.
T Consensus 237 ~~~~~~~~~r~~~~~~~gl~~~p~ 260 (275)
T TIGR01084 237 YDGEVLLEQRPEKGLWGGLYCFPQ 260 (275)
T ss_pred CCCeEEEEeCCCCchhhccccCCC
Confidence 358999998864 5689999996
No 198
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=42.20 E-value=14 Score=39.88 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=20.7
Q ss_pred cCCCCCCCCCCCeeccCCccccccCC-CCCC
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNA-SCKK 214 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~-~C~~ 214 (323)
--.+||.||+++.. .+....|+|+ .|..
T Consensus 422 ~P~~CP~C~~~l~~--~~~~~~C~n~~~Cpa 450 (689)
T PRK14351 422 FPDTCPVCDSAVER--DGPLAFCTGGLACPA 450 (689)
T ss_pred CCCCCCCCCCEeee--CCceEEcCCCCCCHH
Confidence 45799999999975 4555679874 5853
No 199
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=42.07 E-value=13 Score=36.46 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=13.7
Q ss_pred CCCCCCCCCCeeccCCc
Q 020612 187 RFCGHCGEKTIPKEAGK 203 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~ 203 (323)
-|||.||+++....|..
T Consensus 26 ffCPaC~~~l~lK~G~~ 42 (342)
T COG4469 26 FFCPACGSQLILKQGLI 42 (342)
T ss_pred cccCCCCCeeeeecCcc
Confidence 59999999998766543
No 200
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=41.75 E-value=19 Score=26.53 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=19.9
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
..|..||..+...+.+.+..|| .||..
T Consensus 8 ~~CtSCg~~i~~~~~~~~F~CP--nCG~~ 34 (59)
T PRK14890 8 PKCTSCGIEIAPREKAVKFLCP--NCGEV 34 (59)
T ss_pred ccccCCCCcccCCCccCEeeCC--CCCCe
Confidence 4688888888777777777887 57754
No 201
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=40.73 E-value=17 Score=26.23 Aligned_cols=28 Identities=25% Similarity=0.618 Sum_probs=20.1
Q ss_pred CCCCCCCCCeecc--CCccccccCCCCCCccc
Q 020612 188 FCGHCGEKTIPKE--AGKLKQCSNASCKKRIY 217 (323)
Q Consensus 188 fC~~CG~~~~~~~--~g~~~~C~~~~C~~~~y 217 (323)
-||.||+.+.... .|-...|+ .||....
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp--~CGaele 33 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICD--ECGAELE 33 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCC--CCCCEEE
Confidence 5999999876532 25566887 7998653
No 202
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=40.68 E-value=17 Score=26.40 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=18.3
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
.+.+.|+.||.-|. +.+|| .||...
T Consensus 3 s~mr~C~~CgvYTL------k~~CP--~CG~~t 27 (56)
T PRK13130 3 SKIRKCPKCGVYTL------KEICP--VCGGKT 27 (56)
T ss_pred ccceECCCCCCEEc------cccCc--CCCCCC
Confidence 46788999998775 55786 687653
No 203
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=40.57 E-value=16 Score=32.65 Aligned_cols=32 Identities=16% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcccCCc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRV 220 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~ 220 (323)
+..|+.||.++.+..- ..+.|+ .|+.....++
T Consensus 149 ~a~~~~~g~~~~~~~~-~~~~c~--~~~~~e~rkv 180 (189)
T PRK09521 149 YAMCSRCRTPLVKKGE-NELKCP--NCGNIETRKL 180 (189)
T ss_pred EEEccccCCceEECCC-CEEECC--CCCCEEeecc
Confidence 4579999999987543 458998 7997765443
No 204
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=40.57 E-value=9.5 Score=30.44 Aligned_cols=30 Identities=23% Similarity=0.671 Sum_probs=22.9
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
....+||.||.......+---+.|. .|+..
T Consensus 33 ~~ky~Cp~Cgk~~vkR~a~GIW~C~--~C~~~ 62 (90)
T PF01780_consen 33 HAKYTCPFCGKTSVKRVATGIWKCK--KCGKK 62 (90)
T ss_dssp HS-BEESSSSSSEEEEEETTEEEET--TTTEE
T ss_pred hCCCcCCCCCCceeEEeeeEEeecC--CCCCE
Confidence 4556899999999887776668997 79753
No 205
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=40.25 E-value=7.1 Score=38.16 Aligned_cols=70 Identities=27% Similarity=0.324 Sum_probs=53.8
Q ss_pred CCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec
Q 020612 210 ASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279 (323)
Q Consensus 210 ~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~ 279 (323)
.-|....++-..++..+++++...+....++....-+..|.+|-|.+..||-..++..|+-.||+|....
T Consensus 227 ~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 227 VVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred hhhcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 3567777777777776777776656655555443345689999999999999999999999999998753
No 206
>TIGR02820 formald_GSH S-(hydroxymethyl)glutathione synthase. The formation of S-(hydroxymethyl)glutathione synthase from glutathione and formaldehyde occurs naturally, but this enzyme speeds its formation in some species as part of a pathway of formaldehyde detoxification.
Probab=39.88 E-value=11 Score=33.77 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=16.8
Q ss_pred ceeeecCCCCCHHHH-HHHHHHHHhCCee
Q 020612 251 CIAGFIEPGESLEEA-VRRETWEETGIEV 278 (323)
Q Consensus 251 lPgG~VE~GEs~eeA-a~REv~EEtGL~v 278 (323)
+..-.+|.|-.+|.- -+|--..|+|++.
T Consensus 134 ft~s~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (182)
T TIGR02820 134 FVSSIIETGTDPERMDGIRARLRELGLEP 162 (182)
T ss_pred EEeeccccCCChHHhHHHHHHHHHcCCCc
Confidence 456667777766532 3455556778764
No 207
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=39.82 E-value=18 Score=28.90 Aligned_cols=31 Identities=29% Similarity=0.790 Sum_probs=23.6
Q ss_pred hccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
......||.||.......+---+.|. .|+..
T Consensus 33 q~a~y~CpfCgk~~vkR~a~GIW~C~--~C~~~ 63 (90)
T PTZ00255 33 QHAKYFCPFCGKHAVKRQAVGIWRCK--GCKKT 63 (90)
T ss_pred HhCCccCCCCCCCceeeeeeEEEEcC--CCCCE
Confidence 34456899999988877776677887 68764
No 208
>PRK04023 DNA polymerase II large subunit; Validated
Probab=38.62 E-value=19 Score=40.21 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=18.4
Q ss_pred hhccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
=-...+||+.||..+ ....|+ .||..
T Consensus 622 VEVg~RfCpsCG~~t------~~frCP--~CG~~ 647 (1121)
T PRK04023 622 VEIGRRKCPSCGKET------FYRRCP--FCGTH 647 (1121)
T ss_pred ecccCccCCCCCCcC------CcccCC--CCCCC
Confidence 345578999999986 345776 57765
No 209
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=38.51 E-value=24 Score=25.58 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=16.2
Q ss_pred CCCCCCCCCeeccCCccccccCCCCCCccc
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
+||.|+++. .+.....|| .||...|
T Consensus 1 ~Cpv~~~~~---~~~v~~~Cp--~cGipth 25 (55)
T PF13824_consen 1 LCPVCKKDL---PAHVNFECP--DCGIPTH 25 (55)
T ss_pred CCCCCcccc---ccccCCcCC--CCCCcCc
Confidence 588888865 334455676 6777654
No 210
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.56 E-value=12 Score=32.22 Aligned_cols=25 Identities=24% Similarity=0.646 Sum_probs=15.3
Q ss_pred ccCCCCCCCCCCCeeccCCcccccc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCS 208 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~ 208 (323)
=..+||.+||.+......--...|.
T Consensus 87 Cq~r~CARCGGrv~lrsNKv~wvcn 111 (169)
T KOG3799|consen 87 CQTRFCARCGGRVSLRSNKVMWVCN 111 (169)
T ss_pred hhhhHHHhcCCeeeeccCceEEecc
Confidence 3456777777776665555555554
No 211
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=37.03 E-value=18 Score=26.07 Aligned_cols=22 Identities=36% Similarity=0.911 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
...|+.||+..... +.|+ .||.
T Consensus 26 l~~C~~cG~~~~~H-----~vc~--~cG~ 47 (55)
T TIGR01031 26 LVVCPNCGEFKLPH-----RVCP--SCGY 47 (55)
T ss_pred ceECCCCCCcccCe-----eECC--ccCe
Confidence 35699999987654 4676 6884
No 212
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=36.67 E-value=47 Score=31.43 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=35.0
Q ss_pred eEEEEeeccCCCCcccceeeec-CCCCCHHHHHHHHHHHHhCCe
Q 020612 235 RVLLSRQSRFVPRMWSCIAGFI-EPGESLEEAVRRETWEETGIE 277 (323)
Q Consensus 235 riLL~rr~~~~~g~w~lPgG~V-E~GEs~eeAa~REv~EEtGL~ 277 (323)
=+||+++.-...+.|-||-+-. +.++++...|.|++++-.|=.
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~ 183 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN 183 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence 4677775523356899999998 999999999999999988854
No 213
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=36.44 E-value=19 Score=24.19 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=16.7
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCe
Q 020612 174 GHARALLEWHNVSRFCGHCGEKTI 197 (323)
Q Consensus 174 ~~A~~l~~W~~~~~fC~~CG~~~~ 197 (323)
..|.+|..-+..-+||..||.-+.
T Consensus 5 ~La~al~~~~~~i~~C~~C~nlse 28 (41)
T PF02132_consen 5 QLADALKEAKENIKFCSICGNLSE 28 (41)
T ss_dssp HHHHHHHHHHHH-EE-SSS--EES
T ss_pred HHHHHHHHHHHcCCccCCCCCcCC
Confidence 357889999999999999998664
No 214
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=36.26 E-value=15 Score=26.99 Aligned_cols=24 Identities=33% Similarity=0.751 Sum_probs=18.0
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCC
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCK 213 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~ 213 (323)
.|++|+.||++..+. ...|+ +.|+
T Consensus 7 PH~HC~VCg~aIp~d----e~~CS-e~C~ 30 (64)
T COG4068 7 PHRHCVVCGKAIPPD----EQVCS-EECG 30 (64)
T ss_pred CCccccccCCcCCCc----cchHH-HHHH
Confidence 589999999998654 45676 4576
No 215
>PRK12496 hypothetical protein; Provisional
Probab=35.38 E-value=15 Score=32.25 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=9.4
Q ss_pred CCCCCCCCCCeec
Q 020612 187 RFCGHCGEKTIPK 199 (323)
Q Consensus 187 ~fC~~CG~~~~~~ 199 (323)
.+||.||+++...
T Consensus 144 ~~C~~CG~~~~r~ 156 (164)
T PRK12496 144 DVCEICGSPVKRK 156 (164)
T ss_pred CcCCCCCChhhhc
Confidence 4588888887644
No 216
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=34.89 E-value=39 Score=29.54 Aligned_cols=31 Identities=29% Similarity=0.817 Sum_probs=20.3
Q ss_pred CCCCCCCCCee------ccCC----ccccccCCCCCCcc--cCCc
Q 020612 188 FCGHCGEKTIP------KEAG----KLKQCSNASCKKRI--YPRV 220 (323)
Q Consensus 188 fC~~CG~~~~~------~~~g----~~~~C~~~~C~~~~--ypr~ 220 (323)
.||.||+.-.. .+.| +++.|+ .|+..+ |-+.
T Consensus 2 ~CPfC~~~~tkViDSR~~edg~aIRRRReC~--~C~~RFTTfE~~ 44 (156)
T COG1327 2 KCPFCGHEDTKVIDSRPAEEGNAIRRRRECL--ECGERFTTFERA 44 (156)
T ss_pred CCCCCCCCCCeeeecccccccchhhhhhccc--ccccccchhhee
Confidence 69999998532 2333 567887 798754 5543
No 217
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=34.56 E-value=21 Score=25.21 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=15.8
Q ss_pred hccCCCCCC--CCCCCeeccCCcc--ccccCCCCCCc
Q 020612 183 HNVSRFCGH--CGEKTIPKEAGKL--KQCSNASCKKR 215 (323)
Q Consensus 183 ~~~~~fC~~--CG~~~~~~~~g~~--~~C~~~~C~~~ 215 (323)
....++||+ |+.......+... ..|+ .|+..
T Consensus 15 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~C~--~C~~~ 49 (64)
T PF01485_consen 15 DPNIRWCPNPDCEYIIEKDDGCNSPIVTCP--SCGTE 49 (64)
T ss_dssp ---CC--TTSST---ECS-SSTTS--CCTT--SCCSE
T ss_pred CCCccCCCCCCCcccEEecCCCCCCeeECC--CCCCc
Confidence 344579988 9999887776665 7887 57653
No 218
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=34.45 E-value=16 Score=26.69 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=13.3
Q ss_pred CCCCCCCCCee-ccCCccccccCCCCC
Q 020612 188 FCGHCGEKTIP-KEAGKLKQCSNASCK 213 (323)
Q Consensus 188 fC~~CG~~~~~-~~~g~~~~C~~~~C~ 213 (323)
-||.||+++.. ....++..|. ..|.
T Consensus 4 ~CP~C~k~~~~~~~n~~rPFCS-~RCk 29 (57)
T PF03884_consen 4 KCPICGKPVEWSPENPFRPFCS-ERCK 29 (57)
T ss_dssp E-TTT--EEE-SSSSS--SSSS-HHHH
T ss_pred cCCCCCCeecccCCCCcCCccc-Hhhc
Confidence 59999999987 4567777886 3454
No 219
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=34.30 E-value=27 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=20.7
Q ss_pred ccCCCCCCCCCCCee---ccCCccccccCCCCCCcc
Q 020612 184 NVSRFCGHCGEKTIP---KEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~---~~~g~~~~C~~~~C~~~~ 216 (323)
.+.-.||.||+.... ..+.-...|+ .|+.+.
T Consensus 19 pt~f~CP~Cge~~v~v~~~k~~~h~~C~--~CG~y~ 52 (99)
T PRK14892 19 PKIFECPRCGKVSISVKIKKNIAIITCG--NCGLYT 52 (99)
T ss_pred CcEeECCCCCCeEeeeecCCCcceEECC--CCCCcc
Confidence 455679999976553 2233455887 799874
No 220
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=34.30 E-value=88 Score=25.09 Aligned_cols=26 Identities=31% Similarity=0.686 Sum_probs=18.5
Q ss_pred CCCCCCCCCCeecc--CCccccccCCCCCC
Q 020612 187 RFCGHCGEKTIPKE--AGKLKQCSNASCKK 214 (323)
Q Consensus 187 ~fC~~CG~~~~~~~--~g~~~~C~~~~C~~ 214 (323)
--|..||....... ..++..|| .|-.
T Consensus 5 F~C~~CG~~V~p~~~g~~~RNHCP--~CL~ 32 (92)
T PF12647_consen 5 FTCVHCGLTVSPLAAGSAHRNHCP--SCLS 32 (92)
T ss_pred cCccccCCCcccCCCCCCccCcCc--cccc
Confidence 35999999887743 44778887 5743
No 221
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=34.16 E-value=43 Score=23.58 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=22.5
Q ss_pred hhccCCCCC--CCCCCCeecc--CCccccccCCCCCCc
Q 020612 182 WHNVSRFCG--HCGEKTIPKE--AGKLKQCSNASCKKR 215 (323)
Q Consensus 182 W~~~~~fC~--~CG~~~~~~~--~g~~~~C~~~~C~~~ 215 (323)
=+...++|| .|+....... ......|+ .|+..
T Consensus 14 ~~~~~~~CP~~~C~~~~~~~~~~~~~~v~C~--~C~~~ 49 (64)
T smart00647 14 SNPDLKWCPAPDCSAAIIVTEEEGCNRVTCP--KCGFS 49 (64)
T ss_pred cCCCccCCCCCCCcceEEecCCCCCCeeECC--CCCCe
Confidence 356788999 9988877653 55566785 57653
No 222
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=33.34 E-value=22 Score=40.64 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=6.7
Q ss_pred CCCCCCCCCCC
Q 020612 186 SRFCGHCGEKT 196 (323)
Q Consensus 186 ~~fC~~CG~~~ 196 (323)
.+.||.||+.+
T Consensus 667 ~rkCPkCG~~t 677 (1337)
T PRK14714 667 RRRCPSCGTET 677 (1337)
T ss_pred EEECCCCCCcc
Confidence 45666666654
No 223
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=33.10 E-value=30 Score=30.20 Aligned_cols=32 Identities=34% Similarity=0.798 Sum_probs=19.2
Q ss_pred CCCCCCCCC-eec-----cCC----ccccccCCCCCCc--ccCCcc
Q 020612 188 FCGHCGEKT-IPK-----EAG----KLKQCSNASCKKR--IYPRVD 221 (323)
Q Consensus 188 fC~~CG~~~-~~~-----~~g----~~~~C~~~~C~~~--~ypr~~ 221 (323)
-||.||++- ... ..| ..++|+ .||.. .|-++.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~--~c~~~f~~~e~~~ 45 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECL--ACGKRFTTFERVE 45 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeecc--ccCCcceEeEecc
Confidence 499999975 211 122 347898 68765 455444
No 224
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=32.99 E-value=1.8e+02 Score=27.77 Aligned_cols=79 Identities=22% Similarity=0.171 Sum_probs=48.4
Q ss_pred EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHH-HHHHhCCeeccEEEEEEeecCCCCC-CCCeeEE
Q 020612 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRE-TWEETGIEVGEVVYHTSQPWPVGPN-SMPCQLM 301 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~RE-v~EEtGL~v~~v~~~gs~~~~~~~~-~~~~~lm 301 (323)
|++.|.+ .+-+||-+++.. .+|.|=.|++-.-.|+-.|+ |.+.|+..++.++.+.++--....+ .-...+.
T Consensus 28 VvvAv~~-~~p~VLtV~q~~------aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~Dr~R~~~~g~rvis 100 (322)
T COG4111 28 VVVAVTD-GGPRVLTVRQGA------ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFADRDRRNEGGMRVIS 100 (322)
T ss_pred EEEEEcC-CCceEEEecccc------cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhccccccCcCCceEEE
Confidence 3444444 456888887764 38999999887545555555 5667898888776554432221111 2245778
Q ss_pred EEEEEEee
Q 020612 302 VGFYAYAK 309 (323)
Q Consensus 302 i~f~a~~~ 309 (323)
++|++.+.
T Consensus 101 v~YLgLtr 108 (322)
T COG4111 101 VSYLGLTR 108 (322)
T ss_pred EEEeeecc
Confidence 88888654
No 225
>PRK13910 DNA glycosylase MutY; Provisional
Probab=32.71 E-value=56 Score=31.45 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=16.9
Q ss_pred CCeEEEEeecc-CCCCccccee
Q 020612 233 NDRVLLSRQSR-FVPRMWSCIA 253 (323)
Q Consensus 233 ~~riLL~rr~~-~~~g~w~lPg 253 (323)
++++||.||.. .+.|+|+||.
T Consensus 196 ~~~~ll~kr~~~l~~gl~~fP~ 217 (289)
T PRK13910 196 NNQIALEKIEQKLYLGMHHFPN 217 (289)
T ss_pred CCEEEEEECCCchhcccccCCC
Confidence 57999998853 5689999996
No 226
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=32.34 E-value=18 Score=35.50 Aligned_cols=12 Identities=50% Similarity=1.207 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCe
Q 020612 186 SRFCGHCGEKTI 197 (323)
Q Consensus 186 ~~fC~~CG~~~~ 197 (323)
-.|||.||.+|-
T Consensus 257 k~FCp~CG~~TL 268 (376)
T KOG2463|consen 257 KDFCPSCGHKTL 268 (376)
T ss_pred hhcccccCCCee
Confidence 579999999964
No 227
>PRK00504 rpmG 50S ribosomal protein L33; Validated
Probab=31.27 E-value=23 Score=25.09 Aligned_cols=16 Identities=38% Similarity=0.974 Sum_probs=12.5
Q ss_pred cCCCCCCCCCCCeecc
Q 020612 185 VSRFCGHCGEKTIPKE 200 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~ 200 (323)
-.+|||.|+..+...+
T Consensus 33 lkKycp~c~khtlhkE 48 (50)
T PRK00504 33 LKKFCPRCNKHTLHKE 48 (50)
T ss_pred EECcCCCCCCeEeeee
Confidence 3589999999887654
No 228
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=31.24 E-value=28 Score=25.72 Aligned_cols=27 Identities=26% Similarity=0.696 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
...|..||..+...+...+..|| .||.
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CP--nCGe 35 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCP--NCGE 35 (61)
T ss_pred CceeccCCCEeccCCceeEeeCC--CCCc
Confidence 45788888888888888888887 4773
No 229
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=31.12 E-value=34 Score=33.00 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=19.9
Q ss_pred ccCCCCCCCCCCCe-eccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTI-PKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~-~~~~g~~~~C~~~~C~~~ 215 (323)
.....||.||+... .........|. .||.+
T Consensus 9 ~~~~~Cp~Cg~~~iv~d~~~Ge~vC~--~CG~V 39 (310)
T PRK00423 9 EEKLVCPECGSDKLIYDYERGEIVCA--DCGLV 39 (310)
T ss_pred ccCCcCcCCCCCCeeEECCCCeEeec--ccCCc
Confidence 34568999998432 23344556897 79875
No 230
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=31.07 E-value=29 Score=29.65 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=25.3
Q ss_pred hhcc-CCCCCCCCCCCeeccCC---------------ccccccCCCCCCcccCC
Q 020612 182 WHNV-SRFCGHCGEKTIPKEAG---------------KLKQCSNASCKKRIYPR 219 (323)
Q Consensus 182 W~~~-~~fC~~CG~~~~~~~~g---------------~~~~C~~~~C~~~~ypr 219 (323)
+... +.-|+.|++++...... .-.+|+ .|+..+|+-
T Consensus 86 ~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~--~C~kiyW~G 137 (147)
T PF01927_consen 86 RLDPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCP--GCGKIYWEG 137 (147)
T ss_pred ccCCCCCccCCCCcEeeechhhccccccCccccccCCeEEECC--CCCCEeccc
Confidence 4443 78999999998764322 234787 799988863
No 231
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.05 E-value=34 Score=36.72 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=11.7
Q ss_pred CCeEEEEEeCCceeeec
Q 020612 63 PDFKVLPFRKGRPLTYS 79 (323)
Q Consensus 63 ~~~~~l~f~~~~~l~~~ 79 (323)
..+.|+||.+....+..
T Consensus 248 RSAvFaP~~~LgLIIvd 264 (665)
T PRK14873 248 RSAVFAPVEDLGLVAIW 264 (665)
T ss_pred ceeEEeccCCCCEEEEE
Confidence 46777888887776643
No 232
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=31.01 E-value=24 Score=29.01 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=15.5
Q ss_pred ccCCccccccCCCCCCcccCC
Q 020612 199 KEAGKLKQCSNASCKKRIYPR 219 (323)
Q Consensus 199 ~~~g~~~~C~~~~C~~~~ypr 219 (323)
.+-|.+|+|+ +||..+|.-
T Consensus 4 pelGtKR~Cp--~CG~kFYDL 22 (108)
T PF09538_consen 4 PELGTKRTCP--SCGAKFYDL 22 (108)
T ss_pred cccCCcccCC--CCcchhccC
Confidence 4568999998 799998864
No 233
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=30.80 E-value=49 Score=26.46 Aligned_cols=30 Identities=23% Similarity=0.676 Sum_probs=23.1
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.....||.||.......+---+.|. .|+..
T Consensus 33 ~a~y~CpfCgk~~vkR~a~GIW~C~--~C~~~ 62 (91)
T TIGR00280 33 KAKYVCPFCGKKTVKRGSTGIWTCR--KCGAK 62 (91)
T ss_pred hcCccCCCCCCCceEEEeeEEEEcC--CCCCE
Confidence 4456899999888877777677887 68764
No 234
>KOG0402 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=30.71 E-value=37 Score=26.80 Aligned_cols=29 Identities=38% Similarity=0.784 Sum_probs=22.2
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
..-.|+.||..+....+---+.|. .|...
T Consensus 35 aky~CsfCGK~~vKR~AvGiW~C~--~C~kv 63 (92)
T KOG0402|consen 35 AKYTCSFCGKKTVKRKAVGIWKCG--SCKKV 63 (92)
T ss_pred hhhhhhhcchhhhhhhceeEEecC--Cccce
Confidence 345799999999988877677786 57654
No 235
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=30.06 E-value=1.1e+02 Score=26.38 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcc-cCCcccEEEEEEEeCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRI-YPRVDPVVIMLVIDRE 232 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~-ypr~~pvVivlV~~~~ 232 (323)
+.-||.|.+++..... ....|. .|+... -|...-.+-+.|.|..
T Consensus 34 Y~aC~~C~kkv~~~~~-~~~~C~--~C~~~~~~~~~ry~l~~~i~D~T 78 (166)
T cd04476 34 YPACPGCNKKVVEEGN-GTYRCE--KCNKSVPNPEYRYILSLNVADHT 78 (166)
T ss_pred EccccccCcccEeCCC-CcEECC--CCCCcCCCccEEEEEEEEEEeCC
Confidence 6679999999875532 556787 688765 3444444445555543
No 236
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.57 E-value=35 Score=22.10 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=17.5
Q ss_pred CCCCCCCCCeecc---CCccccccCCCCCC
Q 020612 188 FCGHCGEKTIPKE---AGKLKQCSNASCKK 214 (323)
Q Consensus 188 fC~~CG~~~~~~~---~g~~~~C~~~~C~~ 214 (323)
.|+.||+...... .+....|| .|+.
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP--~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCP--ECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCC--CCCC
Confidence 5999999765432 25566787 7987
No 237
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.80 E-value=27 Score=26.16 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=21.2
Q ss_pred ccCCCCCCCCCCCeec-cCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPK-EAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~-~~g~~~~C~~~~C~~~ 215 (323)
+...-||.||++.... +...+..|. ..|..+
T Consensus 5 ~~~v~CP~Cgkpv~w~~~s~frPFCS-kRCklI 36 (65)
T COG3024 5 RITVPCPTCGKPVVWGEESPFRPFCS-KRCKLI 36 (65)
T ss_pred cccccCCCCCCcccccccCCcCcchh-Hhhhhc
Confidence 3456799999998764 456677776 356543
No 238
>PRK08402 replication factor A; Reviewed
Probab=28.77 E-value=77 Score=31.41 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=31.3
Q ss_pred hccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEE
Q 020612 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238 (323)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL 238 (323)
..-+.-||.|.+++....+....+|. .|+.. -|...-.+-+.|-| ..+.+-+
T Consensus 209 ~~~y~aCp~CnKkv~~~~~~~~~~Ce--~~~~v-~p~~ryil~~~l~D-~TG~~~v 260 (355)
T PRK08402 209 VLVYDACPECRRKVDYDPATDTWICP--EHGEV-EPIKITILDFGLDD-GTGYIRV 260 (355)
T ss_pred CeeEecCCCCCeEEEEecCCCCEeCC--CCCCc-CcceeEEEEEEEEc-CCCcEEE
Confidence 33478899999998766666667897 68752 34334333333333 3454443
No 239
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=28.71 E-value=18 Score=31.50 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=21.0
Q ss_pred cCCCCCCCCCCCeeccC-CccccccCCCCCCc
Q 020612 185 VSRFCGHCGEKTIPKEA-GKLKQCSNASCKKR 215 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~-g~~~~C~~~~C~~~ 215 (323)
.+-+||+||.+....++ .....|| .||..
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~~~F~Cp--~Cg~~ 137 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAMELNFTCP--RCGAM 137 (158)
T ss_pred CeEECCCCCcEeeHHHHHHcCCcCC--CCCCE
Confidence 34459999988766544 3567997 79875
No 240
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=28.68 E-value=31 Score=22.66 Aligned_cols=31 Identities=19% Similarity=0.532 Sum_probs=19.0
Q ss_pred hhccCC-CCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 182 WHNVSR-FCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 182 W~~~~~-fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
|-+..+ -|+.||+. ......-...|. .|+..
T Consensus 3 ~~~~~~~~C~~C~~~-~~~~~dG~~yC~--~cG~~ 34 (36)
T PF11781_consen 3 WMRGPNEPCPVCGSR-WFYSDDGFYYCD--RCGHQ 34 (36)
T ss_pred ccccCCCcCCCCCCe-EeEccCCEEEhh--hCceE
Confidence 444332 49999999 444444456785 57754
No 241
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=28.47 E-value=33 Score=39.33 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCe
Q 020612 186 SRFCGHCGEKTI 197 (323)
Q Consensus 186 ~~fC~~CG~~~~ 197 (323)
..|||.||+++.
T Consensus 679 ~~fCP~CGs~te 690 (1337)
T PRK14714 679 ENRCPDCGTHTE 690 (1337)
T ss_pred cccCcccCCcCC
Confidence 359999999874
No 242
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=28.39 E-value=20 Score=31.95 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=21.6
Q ss_pred cCCCCCCCCCCCeeccC-CccccccCCCCCCcc
Q 020612 185 VSRFCGHCGEKTIPKEA-GKLKQCSNASCKKRI 216 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~-g~~~~C~~~~C~~~~ 216 (323)
.+-+||+||.+....++ .....|| .||..-
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~~~F~Cp--~Cg~~L 146 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAMEYGFRCP--QCGEML 146 (178)
T ss_pred CEEECCCCCcEEeHHHHhhcCCcCC--CCCCCC
Confidence 35569999998766543 4567897 798754
No 243
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=28.19 E-value=40 Score=28.93 Aligned_cols=38 Identities=13% Similarity=0.310 Sum_probs=26.2
Q ss_pred HHHHhhhccCCCCCCCCCCC-eecc--CCccccccCCCCCCcc
Q 020612 177 RALLEWHNVSRFCGHCGEKT-IPKE--AGKLKQCSNASCKKRI 216 (323)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~-~~~~--~g~~~~C~~~~C~~~~ 216 (323)
..|-.+-..+--|+.||+|- .... .-+-..|. .||...
T Consensus 93 ~~L~~yI~~yVlC~~C~spdT~l~k~~r~~~l~C~--ACGa~~ 133 (138)
T PRK03988 93 EKIDRYVKEYVICPECGSPDTKLIKEGRIWVLKCE--ACGAET 133 (138)
T ss_pred HHHHHHHHhcEECCCCCCCCcEEEEcCCeEEEEcc--cCCCCC
Confidence 34556778899999999994 3332 23456786 798764
No 244
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=28.03 E-value=26 Score=25.17 Aligned_cols=20 Identities=40% Similarity=1.061 Sum_probs=14.2
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCC
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCK 213 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~ 213 (323)
..|+.||...... ..|+ .||
T Consensus 27 ~~c~~cg~~~~~H-----~vc~--~cG 46 (56)
T PF01783_consen 27 VKCPNCGEPKLPH-----RVCP--SCG 46 (56)
T ss_dssp EESSSSSSEESTT-----SBCT--TTB
T ss_pred eeeccCCCEeccc-----EeeC--CCC
Confidence 5799999765433 5786 687
No 245
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=27.93 E-value=38 Score=24.47 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
..-|+.||.++.. .+..-+|+ .|+..+
T Consensus 5 ~~~C~~Cg~~~~~--~dDiVvCp--~Cgapy 31 (54)
T PF14446_consen 5 GCKCPVCGKKFKD--GDDIVVCP--ECGAPY 31 (54)
T ss_pred CccChhhCCcccC--CCCEEECC--CCCCcc
Confidence 4569999998843 34556887 788764
No 246
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=27.59 E-value=35 Score=36.53 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
+++|+.||+.+. ...+.|+ .||...
T Consensus 27 ~~~Cp~CG~~~~----~~~~fC~--~CG~~~ 51 (645)
T PRK14559 27 HKPCPQCGTEVP----VDEAHCP--NCGAET 51 (645)
T ss_pred CCcCCCCCCCCC----ccccccc--ccCCcc
Confidence 367999998854 3356787 688764
No 247
>PF04828 GFA: Glutathione-dependent formaldehyde-activating enzyme; InterPro: IPR006913 The GFA family consists mainly of glutathione-dependent formaldehyde-activating enzymes, but also includes centromere protein V and a fission yeast protein described as uncharacterised lyase. Glutathione-dependent formaldehyde-activating enzyme catalyse the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues.; GO: 0016846 carbon-sulfur lyase activity, 0008152 metabolic process; PDB: 3FAC_B 1XA8_A 1X6M_B.
Probab=27.50 E-value=15 Score=27.82 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=9.9
Q ss_pred cCCCCCCCCCCCee
Q 020612 185 VSRFCGHCGEKTIP 198 (323)
Q Consensus 185 ~~~fC~~CG~~~~~ 198 (323)
.+.||+.||.++..
T Consensus 47 ~r~FC~~CGs~l~~ 60 (92)
T PF04828_consen 47 ERYFCPTCGSPLFS 60 (92)
T ss_dssp EEEEETTT--EEEE
T ss_pred cCcccCCCCCeeec
Confidence 45899999999874
No 248
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.48 E-value=28 Score=28.94 Aligned_cols=28 Identities=32% Similarity=0.732 Sum_probs=19.3
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
...--||.||+.|... |+...|. .|+..
T Consensus 67 av~V~CP~C~K~TKmL--Gr~D~CM--~C~~p 94 (114)
T PF11023_consen 67 AVQVECPNCGKQTKML--GRVDACM--HCKEP 94 (114)
T ss_pred ceeeECCCCCChHhhh--chhhccC--cCCCc
Confidence 4556699999999764 3445776 57654
No 249
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.17 E-value=38 Score=28.02 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=20.7
Q ss_pred HHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 176 ARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 176 A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
|+=-+.|-.-.-+|..||........ ....|| .|+...
T Consensus 61 a~L~Ie~vp~~~~C~~Cg~~~~~~~~-~~~~CP--~Cgs~~ 98 (117)
T PRK00564 61 AILDIVDEKVELECKDCSHVFKPNAL-DYGVCE--KCHSKN 98 (117)
T ss_pred CEEEEEecCCEEEhhhCCCccccCCc-cCCcCc--CCCCCc
Confidence 33344556666778888854433222 123476 687654
No 250
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=27.01 E-value=48 Score=23.35 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=13.5
Q ss_pred HHhhhccCCCCCCCCCCCe
Q 020612 179 LLEWHNVSRFCGHCGEKTI 197 (323)
Q Consensus 179 l~~W~~~~~fC~~CG~~~~ 197 (323)
+..|-+.+..||.||.++.
T Consensus 28 i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 28 IEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred HHHHHHHCCCCCCCcCCCC
Confidence 3344445789999999874
No 251
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=26.70 E-value=64 Score=25.77 Aligned_cols=30 Identities=17% Similarity=0.598 Sum_probs=23.1
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.....||.||.......+---+.|. .|+..
T Consensus 34 ~a~y~CpfCgk~~vkR~a~GIW~C~--~C~~~ 63 (90)
T PRK03976 34 RAKHVCPVCGRPKVKRVGTGIWECR--KCGAK 63 (90)
T ss_pred hcCccCCCCCCCceEEEEEEEEEcC--CCCCE
Confidence 3456799999998888776677887 68764
No 252
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=26.65 E-value=28 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=20.4
Q ss_pred cCCCCCCCCCCCeec-cCCccccccCCCCCC
Q 020612 185 VSRFCGHCGEKTIPK-EAGKLKQCSNASCKK 214 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~-~~g~~~~C~~~~C~~ 214 (323)
...-||.||+++... ...++..|. ..|..
T Consensus 5 ~~v~CP~C~k~~~w~~~~~~rPFCS-~RCk~ 34 (62)
T PRK00418 5 ITVNCPTCGKPVEWGEISPFRPFCS-KRCQL 34 (62)
T ss_pred ccccCCCCCCcccccCCCCcCCccc-HHHHh
Confidence 346799999998754 456777886 35654
No 253
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=26.51 E-value=34 Score=28.12 Aligned_cols=40 Identities=15% Similarity=0.347 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 173 AGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 173 ~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
+..|+=.+.+-.-.-+|..||....... ....|| .|+...
T Consensus 57 ~egA~L~I~~vp~~~~C~~Cg~~~~~~~--~~~~CP--~Cgs~~ 96 (113)
T PRK12380 57 AQGCDLHIVYKPAQAWCWDCSQVVEIHQ--HDAQCP--HCHGER 96 (113)
T ss_pred cCCCEEEEEeeCcEEEcccCCCEEecCC--cCccCc--CCCCCC
Confidence 3345555667777788999995544332 344587 798654
No 254
>PRK01343 zinc-binding protein; Provisional
Probab=26.49 E-value=36 Score=24.87 Aligned_cols=27 Identities=26% Similarity=0.667 Sum_probs=17.7
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCC
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
...+-||.||++.. ..++..|. ..|..
T Consensus 7 ~p~~~CP~C~k~~~---~~~rPFCS-~RC~~ 33 (57)
T PRK01343 7 RPTRPCPECGKPST---REAYPFCS-ERCRD 33 (57)
T ss_pred CCCCcCCCCCCcCc---CCCCcccC-HHHhh
Confidence 35678999999865 34566775 34543
No 255
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=26.20 E-value=37 Score=32.49 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=21.3
Q ss_pred hhccCCCCCCCCCCCeeccC-C-ccccccCCCCC
Q 020612 182 WHNVSRFCGHCGEKTIPKEA-G-KLKQCSNASCK 213 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~-g-~~~~C~~~~C~ 213 (323)
..+.-..|.+||++.....- | ....|| .|.
T Consensus 241 YgR~GepC~~CGt~I~k~~~~gR~t~~CP--~CQ 272 (273)
T COG0266 241 YGRAGEPCRRCGTPIEKIKLGGRSTFYCP--VCQ 272 (273)
T ss_pred ecCCCCCCCccCCEeEEEEEcCCcCEeCC--CCC
Confidence 44567889999999876543 3 344787 686
No 256
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=26.16 E-value=46 Score=21.95 Aligned_cols=8 Identities=38% Similarity=1.086 Sum_probs=5.2
Q ss_pred CCCCCCCC
Q 020612 189 CGHCGEKT 196 (323)
Q Consensus 189 C~~CG~~~ 196 (323)
|+.||+.+
T Consensus 1 C~~C~~~~ 8 (46)
T TIGR03831 1 CPICGGEE 8 (46)
T ss_pred CCCCCCce
Confidence 77776554
No 257
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=26.12 E-value=44 Score=30.38 Aligned_cols=30 Identities=30% Similarity=0.722 Sum_probs=19.2
Q ss_pred cCCCCCCCCCCCee----ccCCc--cccccCCCCCCcc
Q 020612 185 VSRFCGHCGEKTIP----KEAGK--LKQCSNASCKKRI 216 (323)
Q Consensus 185 ~~~fC~~CG~~~~~----~~~g~--~~~C~~~~C~~~~ 216 (323)
.+-.||.||..-+. ...|. ...|. .||..+
T Consensus 5 iy~~Cp~Cg~eev~hEVik~~g~~~lvrC~--eCG~V~ 40 (201)
T COG1326 5 IYIECPSCGSEEVSHEVIKERGREPLVRCE--ECGTVH 40 (201)
T ss_pred EEEECCCCCcchhhHHHHHhcCCceEEEcc--CCCcEe
Confidence 35679999944331 22233 55897 799877
No 258
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=26.06 E-value=48 Score=28.22 Aligned_cols=38 Identities=16% Similarity=0.455 Sum_probs=26.0
Q ss_pred HHHHhhhccCCCCCCCCCCC-eeccCC--ccccccCCCCCCcc
Q 020612 177 RALLEWHNVSRFCGHCGEKT-IPKEAG--KLKQCSNASCKKRI 216 (323)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~-~~~~~g--~~~~C~~~~C~~~~ 216 (323)
..|-.+-..+--|+.||+|= .....+ +-..|. .||...
T Consensus 88 ~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~--ACGa~~ 128 (133)
T TIGR00311 88 ERIEDYVRKYVICRECNRPDTRIIKEGRVSLLKCE--ACGAKA 128 (133)
T ss_pred HHHHHHHhheEECCCCCCCCcEEEEeCCeEEEecc--cCCCCC
Confidence 35566778899999999993 333323 334776 798754
No 259
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=25.82 E-value=25 Score=34.13 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCc---cccccCCCCCCcccCC
Q 020612 170 LAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGK---LKQCSNASCKKRIYPR 219 (323)
Q Consensus 170 ~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~---~~~C~~~~C~~~~ypr 219 (323)
+..+.+|.-=..|-..-.||+.||++--...-.- .-+|.. .|...+|+.
T Consensus 303 ~~vl~qAi~Gqr~~~d~~fCstCG~~ga~KrCs~CKav~YCdq-eCQk~hWf~ 354 (396)
T KOG1710|consen 303 YEVLVQAIFGQRIAADCQFCSTCGHPGAKKRCSQCKAVAYCDQ-ECQKFHWFI 354 (396)
T ss_pred HHHHHHHHcCceeEEecccccccCCCCccchhhhhHHHHHHHH-HHHHhhhHH
Confidence 4455566555789999999999999854332111 113332 456666664
No 260
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=25.74 E-value=38 Score=28.23 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=9.1
Q ss_pred CCCCCCCCeeccCCc
Q 020612 189 CGHCGEKTIPKEAGK 203 (323)
Q Consensus 189 C~~CG~~~~~~~~g~ 203 (323)
||.||++.....+|.
T Consensus 89 CP~C~s~~~~i~~G~ 103 (115)
T COG0375 89 CPKCGSINLRIIGGD 103 (115)
T ss_pred CCCCCCCceEEecCC
Confidence 677766665555544
No 261
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.74 E-value=40 Score=27.77 Aligned_cols=41 Identities=17% Similarity=0.460 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 173 AGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 173 ~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
+..|+=-+.|..-.-+|..||...... ......|| .|+...
T Consensus 57 ~egA~L~i~~~p~~~~C~~Cg~~~~~~-~~~~~~CP--~Cgs~~ 97 (114)
T PRK03681 57 AEGCKLHLEEQEAECWCETCQQYVTLL-TQRVRRCP--QCHGDM 97 (114)
T ss_pred cCCCEEEEEeeCcEEEcccCCCeeecC-CccCCcCc--CcCCCC
Confidence 334555567778888999999543322 22225687 798654
No 262
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=25.73 E-value=45 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCeeccC--C------ccccccCCCCCC
Q 020612 186 SRFCGHCGEKTIPKEA--G------KLKQCSNASCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~--g------~~~~C~~~~C~~ 214 (323)
-+-||.||++...... + ..-.|. .|+.
T Consensus 3 LkPCPFCG~~~~~~~~~~~~~~~~~~~V~C~--~Cga 37 (61)
T PF14354_consen 3 LKPCPFCGSADVLIRQDEGFDYGMYYYVECT--DCGA 37 (61)
T ss_pred CcCCCCCCCcceEeecccCCCCCCEEEEEcC--CCCC
Confidence 3569999988765432 2 345686 5877
No 263
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=25.50 E-value=36 Score=25.03 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=7.8
Q ss_pred CCCCCCCCCee
Q 020612 188 FCGHCGEKTIP 198 (323)
Q Consensus 188 fC~~CG~~~~~ 198 (323)
-||.||+.|..
T Consensus 19 ~Cp~CG~~t~~ 29 (59)
T COG2260 19 KCPVCGGDTKV 29 (59)
T ss_pred cCCCCCCcccc
Confidence 57777777754
No 264
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.44 E-value=43 Score=27.56 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=24.4
Q ss_pred HHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCccc
Q 020612 176 ARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 176 A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
|+=.+++-.-.-+|..||....... ....|| .|+....
T Consensus 60 a~L~I~~~p~~~~C~~Cg~~~~~~~--~~~~CP--~Cgs~~~ 97 (115)
T TIGR00100 60 AKLNIEDEPVECECEDCSEEVSPEI--DLYRCP--KCHGIML 97 (115)
T ss_pred CEEEEEeeCcEEEcccCCCEEecCC--cCccCc--CCcCCCc
Confidence 4444556677789999995544332 345687 7987653
No 265
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=25.44 E-value=47 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=21.8
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
-.|+.|+..+....+-...+|. .|...
T Consensus 2 ~~C~~C~t~L~yP~gA~~vrCs--~C~~v 28 (31)
T TIGR01053 2 VVCGGCRTLLMYPRGASSVRCA--LCQTV 28 (31)
T ss_pred cCcCCCCcEeecCCCCCeEECC--CCCeE
Confidence 3699999999988888888897 57654
No 266
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=25.25 E-value=23 Score=30.35 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCeeccC------CccccccCCCCCCcccC
Q 020612 186 SRFCGHCGEKTIPKEA------GKLKQCSNASCKKRIYP 218 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~------g~~~~C~~~~C~~~~yp 218 (323)
.-.||+||......++ .....|| .|+.....
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp--~Cg~~l~~ 135 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCP--RCGEELEE 135 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECC--CCCCEEEE
Confidence 4459999988765332 2237897 69986543
No 267
>COG0267 RpmG Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]
Probab=25.05 E-value=31 Score=24.55 Aligned_cols=16 Identities=31% Similarity=0.852 Sum_probs=12.3
Q ss_pred cCCCCCCCCCCCeecc
Q 020612 185 VSRFCGHCGEKTIPKE 200 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~ 200 (323)
-.+|||.|...+...+
T Consensus 33 lkKycp~~~khtlhkE 48 (50)
T COG0267 33 LKKYCPVCRKHTLHKE 48 (50)
T ss_pred EEecCcccccEEEEee
Confidence 3689999998876654
No 268
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=25.02 E-value=35 Score=23.04 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCeec
Q 020612 186 SRFCGHCGEKTIPK 199 (323)
Q Consensus 186 ~~fC~~CG~~~~~~ 199 (323)
.++|+.||+.+...
T Consensus 2 ~~~C~~Cg~~l~~i 15 (47)
T PF13005_consen 2 PRACPDCGGELKEI 15 (47)
T ss_pred CCcCCCCCceeeEC
Confidence 36899999988743
No 269
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.96 E-value=42 Score=26.20 Aligned_cols=28 Identities=18% Similarity=0.519 Sum_probs=19.4
Q ss_pred CCCCCCCCCCeecc--CCccccccCCCCCCcc
Q 020612 187 RFCGHCGEKTIPKE--AGKLKQCSNASCKKRI 216 (323)
Q Consensus 187 ~fC~~CG~~~~~~~--~g~~~~C~~~~C~~~~ 216 (323)
.-||.||-.+++.. +-.--.|| .|.-++
T Consensus 2 llCP~C~v~l~~~~rs~vEiD~CP--rCrGVW 31 (88)
T COG3809 2 LLCPICGVELVMSVRSGVEIDYCP--RCRGVW 31 (88)
T ss_pred cccCcCCceeeeeeecCceeeeCC--ccccEe
Confidence 46999999998864 33444786 676544
No 270
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=24.85 E-value=75 Score=26.74 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=25.2
Q ss_pred CCCCC--CCCCCCeeccCCccccccCCCCCCcc-cCCcccEEEEEEEeCC
Q 020612 186 SRFCG--HCGEKTIPKEAGKLKQCSNASCKKRI-YPRVDPVVIMLVIDRE 232 (323)
Q Consensus 186 ~~fC~--~CG~~~~~~~~g~~~~C~~~~C~~~~-ypr~~pvVivlV~~~~ 232 (323)
+.-|+ .|++++... +.....|+ .|+... -|...-.+-+.|.|..
T Consensus 18 Y~aC~~~~C~kKv~~~-~~~~y~C~--~C~~~~~~~~~ry~l~~~i~D~t 64 (146)
T PF08646_consen 18 YPACPNEKCNKKVTEN-GDGSYRCE--KCNKTVENPKYRYRLSLKISDGT 64 (146)
T ss_dssp EEE-TSTTTS-B-EEE-TTTEEEET--TTTEEESS-EEEEEEEEEEEETT
T ss_pred ECCCCCccCCCEeecC-CCcEEECC--CCCCcCCCeeEEEEEEEEEEeCC
Confidence 45699 999998877 33457897 798764 4444444445555543
No 271
>PRK00595 rpmG 50S ribosomal protein L33; Validated
Probab=24.78 E-value=35 Score=24.42 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCeecc
Q 020612 186 SRFCGHCGEKTIPKE 200 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~ 200 (323)
.+|||.|+..+...+
T Consensus 37 kKycp~~~khtlhkE 51 (53)
T PRK00595 37 KKYDPVLRKHVLHKE 51 (53)
T ss_pred ECcCCCCCCEEeEEe
Confidence 579999998876543
No 272
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.63 E-value=45 Score=28.30 Aligned_cols=14 Identities=21% Similarity=0.537 Sum_probs=6.6
Q ss_pred hhccCCCCCCCCCC
Q 020612 182 WHNVSRFCGHCGEK 195 (323)
Q Consensus 182 W~~~~~fC~~CG~~ 195 (323)
+-...-.|..||..
T Consensus 66 ~~p~~~~C~~CG~~ 79 (135)
T PRK03824 66 EEEAVLKCRNCGNE 79 (135)
T ss_pred ecceEEECCCCCCE
Confidence 33344455555533
No 273
>KOG0909 consensus Peptide:N-glycanase [Posttranslational modification, protein turnover, chaperones]
Probab=23.83 E-value=60 Score=33.12 Aligned_cols=43 Identities=28% Similarity=0.675 Sum_probs=28.4
Q ss_pred HHHHhhhccC-------CCCCCCCCCCeecc-----------CCccc----cccCCCCCCc-ccCCcc
Q 020612 177 RALLEWHNVS-------RFCGHCGEKTIPKE-----------AGKLK----QCSNASCKKR-IYPRVD 221 (323)
Q Consensus 177 ~~l~~W~~~~-------~fC~~CG~~~~~~~-----------~g~~~----~C~~~~C~~~-~ypr~~ 221 (323)
.+|++|-.+. .-|..||.++.... .|-.+ +|. .|+.. .|||.+
T Consensus 145 leLL~WFKq~FF~WvN~PpC~~CG~et~~~l~~~~p~eeE~~~Ga~rVEiy~C~--~C~~~~RFPRYN 210 (500)
T KOG0909|consen 145 LELLNWFKQDFFKWVNNPPCNKCGGETSSGLGNQPPNEEEKKFGAGRVEIYKCN--RCGTETRFPRYN 210 (500)
T ss_pred HHHHHHHHHhhheecCCCCcccccccccccccCCCCchhHhhcCCceEEEEEec--CCCCcccCcccC
Confidence 4689998765 56999999994211 12222 675 68875 588854
No 274
>TIGR01023 rpmG_bact ribosomal protein L33, bacterial type. This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents.
Probab=23.73 E-value=39 Score=24.32 Aligned_cols=15 Identities=27% Similarity=0.806 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCeecc
Q 020612 186 SRFCGHCGEKTIPKE 200 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~ 200 (323)
.+|||.|+..+...+
T Consensus 38 kKycp~~~khtlhkE 52 (54)
T TIGR01023 38 RKYCPVCRKHVLHKE 52 (54)
T ss_pred ECcCCCCCCeEeEEe
Confidence 589999998876544
No 275
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=77 Score=29.64 Aligned_cols=46 Identities=26% Similarity=0.649 Sum_probs=31.2
Q ss_pred HHHHHhhhccCCC---CCCCCCCCeecc--------------------------CCccccccCCCCCCcccCCcccE
Q 020612 176 ARALLEWHNVSRF---CGHCGEKTIPKE--------------------------AGKLKQCSNASCKKRIYPRVDPV 223 (323)
Q Consensus 176 A~~l~~W~~~~~f---C~~CG~~~~~~~--------------------------~g~~~~C~~~~C~~~~ypr~~pv 223 (323)
-++++.|.+..-| |.-|+.++...+ +-..-+|| .|+.+.||.+.-+
T Consensus 37 VQSYLqWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP--~Cs~eiFPp~Nlv 111 (299)
T KOG3970|consen 37 VQSYLQWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCP--CCSQEIFPPINLV 111 (299)
T ss_pred HHHHHHHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCC--CCCCccCCCcccc
Confidence 4688999988766 666777765321 11223786 6999999987643
No 276
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=23.44 E-value=60 Score=22.81 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=9.2
Q ss_pred CCCCCCCCCCe
Q 020612 187 RFCGHCGEKTI 197 (323)
Q Consensus 187 ~fC~~CG~~~~ 197 (323)
+-||.||++-.
T Consensus 2 kPCPfCGg~~~ 12 (53)
T TIGR03655 2 KPCPFCGGADV 12 (53)
T ss_pred CCCCCCCCcce
Confidence 46999999877
No 277
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=23.26 E-value=50 Score=22.08 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=9.4
Q ss_pred CCCCCCCCCCeec
Q 020612 187 RFCGHCGEKTIPK 199 (323)
Q Consensus 187 ~fC~~CG~~~~~~ 199 (323)
..||.||++....
T Consensus 3 ~~Cp~Cg~~~~~~ 15 (47)
T PF14690_consen 3 PRCPHCGSPSVHR 15 (47)
T ss_pred ccCCCcCCCceEC
Confidence 4699999888433
No 278
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=23.19 E-value=44 Score=24.84 Aligned_cols=25 Identities=24% Similarity=0.576 Sum_probs=17.9
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCC
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
+|-.|.+||......+ +..|. +|++
T Consensus 16 tHt~CrRCG~~syh~q---K~~Ca--sCGy 40 (62)
T PRK04179 16 THIRCRRCGRHSYNVR---KKYCA--ACGF 40 (62)
T ss_pred ccchhcccCccccccc---ccchh--hcCC
Confidence 6889999998866553 44675 5765
No 279
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=23.17 E-value=28 Score=28.47 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=21.3
Q ss_pred CCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
-|-+||+-..........-|| .||...|-
T Consensus 4 ~CtrCG~vf~~g~~~il~GCp--~CG~nkF~ 32 (112)
T COG3364 4 QCTRCGEVFDDGSEEILSGCP--KCGCNKFL 32 (112)
T ss_pred eecccccccccccHHHHccCc--cccchheE
Confidence 499999987665555566786 69887764
No 280
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=23.03 E-value=53 Score=35.82 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=17.7
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
..||.||.++...+ -...|. .||+.
T Consensus 725 ~~Cp~Cg~~l~~~~--GC~~C~--~CG~s 749 (752)
T PRK08665 725 GACPECGSILEHEE--GCVVCH--SCGYS 749 (752)
T ss_pred CCCCCCCcccEECC--CCCcCC--CCCCC
Confidence 47999998765554 445787 68864
No 281
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=22.98 E-value=45 Score=32.24 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=40.5
Q ss_pred CCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612 218 PRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277 (323)
Q Consensus 218 pr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~ 277 (323)
++...+++.++..+ .+..+++..-+ .-. .|.. .|..+.++++.+++.|+|.|++|..
T Consensus 27 D~~ggv~v~~~~~~-~d~~~f~~~l~~Sl~-~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~g 84 (295)
T KOG0648|consen 27 DRYGGVVVDIVPEP-MDEKLFIEELRASLQ-KWYL-QGRKGIWLKLPEELARLVEEAAKYG 84 (295)
T ss_pred cccCCEEeecccCC-CCHHHHHHHHHHHHH-HHHH-ccCcccceechHHHHhHHHHHHhcC
Confidence 44555555555443 35555554433 223 7988 9999999999999999999999984
No 282
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=22.78 E-value=50 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=26.1
Q ss_pred HHHhhhccCCCCCCCCCCCee---ccCCccccccCCCCCCcc
Q 020612 178 ALLEWHNVSRFCGHCGEKTIP---KEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 178 ~l~~W~~~~~fC~~CG~~~~~---~~~g~~~~C~~~~C~~~~ 216 (323)
-|..+-..+--|+.||+|=.. ...-+...|. .||...
T Consensus 85 ~L~~fI~~yVlC~~C~spdT~l~k~~r~~~l~C~--aCGa~~ 124 (125)
T PF01873_consen 85 LLDKFIKEYVLCPECGSPDTELIKEGRLIFLKCK--ACGASR 124 (125)
T ss_dssp HHHHHHCHHSSCTSTSSSSEEEEEETTCCEEEET--TTSCEE
T ss_pred HHHHHHHHEEEcCCCCCCccEEEEcCCEEEEEec--ccCCcC
Confidence 344577888999999999432 2345667887 798753
No 283
>PRK12366 replication factor A; Reviewed
Probab=22.65 E-value=1.1e+02 Score=32.78 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEe
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVID 230 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~ 230 (323)
+.-||.|.+++.. .....+|+ .|+.. -|...-.+-+.+-|
T Consensus 532 y~aCp~CnkKv~~--~~g~~~C~--~c~~~-~p~~~~~l~~~i~D 571 (637)
T PRK12366 532 LYLCPNCRKRVEE--VDGEYICE--FCGEV-EPNELLMLNFTLDD 571 (637)
T ss_pred EecccccCeEeEc--CCCcEECC--CCCCC-CCcEEEEEEEEEEc
Confidence 5779999999864 34566897 79987 45544333333433
No 284
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=22.36 E-value=48 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCCCCCCCCCeec-------------------cCCccccccCCCCCCcccCCc
Q 020612 187 RFCGHCGEKTIPK-------------------EAGKLKQCSNASCKKRIYPRV 220 (323)
Q Consensus 187 ~fC~~CG~~~~~~-------------------~~g~~~~C~~~~C~~~~ypr~ 220 (323)
.||+.|+..+... .....|+|+ .||..+..+-
T Consensus 121 wyc~~c~~~~~e~~f~~~d~~~~~~~~~~~f~~~~e~rtC~--~CG~v~~~~~ 171 (177)
T PRK13264 121 WYCDECNHKVHEVEVQLTDIETDLPPVFAAFYASEELRTCD--NCGTVHPGKA 171 (177)
T ss_pred EECCCCCCeEEEEEEEecChhhhhHHHHHHHhcCHhhccCC--cCCcccCccC
Confidence 3899999887531 345677887 7999988763
No 285
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.28 E-value=92 Score=27.77 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCee
Q 020612 171 AIAGHARALLEWHNVSRFCGHCGEKTIP 198 (323)
Q Consensus 171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~ 198 (323)
+++.+|..++. .--..||.||.|+..
T Consensus 141 afa~ra~~VVa--AGRP~CPlCg~PlDP 166 (171)
T PF11290_consen 141 AFARRAREVVA--AGRPPCPLCGEPLDP 166 (171)
T ss_pred HHHHHHHHHHh--CCCCCCCCCCCCCCC
Confidence 45556666666 678899999999854
No 286
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=22.08 E-value=34 Score=23.74 Aligned_cols=15 Identities=40% Similarity=0.787 Sum_probs=11.2
Q ss_pred cCCCCCCCCCCCeec
Q 020612 185 VSRFCGHCGEKTIPK 199 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~ 199 (323)
..-+|+.||+++...
T Consensus 4 g~l~C~~CG~~m~~~ 18 (58)
T PF13408_consen 4 GLLRCGHCGSKMTRR 18 (58)
T ss_pred CcEEcccCCcEeEEE
Confidence 445899999988664
No 287
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.54 E-value=45 Score=27.37 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=11.2
Q ss_pred ccCCCCCCCCCCCe
Q 020612 184 NVSRFCGHCGEKTI 197 (323)
Q Consensus 184 ~~~~fC~~CG~~~~ 197 (323)
-...-||.||.++.
T Consensus 47 ~G~t~CP~Cg~~~e 60 (115)
T COG1885 47 VGSTSCPKCGEPFE 60 (115)
T ss_pred cccccCCCCCCccc
Confidence 34678999999874
No 288
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=21.11 E-value=45 Score=24.58 Aligned_cols=26 Identities=38% Similarity=0.993 Sum_probs=19.4
Q ss_pred CCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
-|+-||+++... .+...+|- +||.+.
T Consensus 22 iCgdC~~en~lk-~~D~irCR--eCG~RI 47 (62)
T KOG3507|consen 22 ICGDCGQENTLK-RGDVIRCR--ECGYRI 47 (62)
T ss_pred Eecccccccccc-CCCcEehh--hcchHH
Confidence 599999998754 45566787 798754
No 289
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=21.03 E-value=66 Score=29.17 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=25.8
Q ss_pred HHHHhhhccCCCCCCCCCCC-eecc--CCccccccCCCCCCcc
Q 020612 177 RALLEWHNVSRFCGHCGEKT-IPKE--AGKLKQCSNASCKKRI 216 (323)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~-~~~~--~g~~~~C~~~~C~~~~ 216 (323)
..|-.+-..+--|+.||+|= .... .-+-..|. .||...
T Consensus 89 ~~l~~yi~~yV~C~~C~~pdT~l~k~~~~~~l~C~--aCGa~~ 129 (201)
T PRK12336 89 AAIDAYVDEYVICSECGLPDTRLVKEDRVLMLRCD--ACGAHR 129 (201)
T ss_pred HHHHHHHHheEECCCCCCCCcEEEEcCCeEEEEcc--cCCCCc
Confidence 34556778899999999994 3332 33445786 798753
No 290
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=20.35 E-value=50 Score=33.22 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCeeccC
Q 020612 186 SRFCGHCGEKTIPKEA 201 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~ 201 (323)
.-|||+||+++.....
T Consensus 38 ~A~CPRC~~~l~~~~~ 53 (418)
T COG2995 38 SAYCPRCGHTLTRGGD 53 (418)
T ss_pred cccCCCCCCccccCCC
Confidence 3478888888865433
Done!