Query 020612
Match_columns 323
No_of_seqs 468 out of 2119
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk6_A NADH pyrophosphatase; 1 100.0 3.6E-39 1.2E-43 301.8 23.1 218 59-322 17-234 (269)
2 3cng_A Nudix hydrolase; struct 99.9 4.9E-23 1.7E-27 181.1 14.1 122 185-315 2-128 (189)
3 2qjt_B Nicotinamide-nucleotide 99.8 6E-21 2.1E-25 182.0 7.2 166 146-322 140-316 (352)
4 2qjo_A Bifunctional NMN adenyl 99.7 1.9E-18 6.6E-23 163.6 8.7 163 148-322 140-310 (341)
5 3i7u_A AP4A hydrolase; nudix p 99.7 7.8E-17 2.7E-21 134.4 10.2 93 223-321 6-99 (134)
6 3id9_A MUTT/nudix family prote 99.7 1.7E-16 5.7E-21 136.0 12.6 99 211-315 13-111 (171)
7 3eds_A MUTT/nudix family prote 99.7 7.2E-17 2.5E-21 136.4 9.9 99 220-322 20-123 (153)
8 2yyh_A MUTT domain, 8-OXO-DGTP 99.7 5.9E-16 2E-20 128.0 13.1 95 217-314 5-102 (139)
9 3shd_A Phosphatase NUDJ; nudix 99.7 3.2E-16 1.1E-20 131.4 11.2 95 223-321 7-102 (153)
10 1sjy_A MUTT/nudix family prote 99.7 7E-16 2.4E-20 129.7 12.8 102 217-321 9-117 (159)
11 3h95_A Nucleoside diphosphate- 99.7 7.1E-16 2.4E-20 136.3 13.0 106 216-322 21-128 (199)
12 3q1p_A Phosphohydrolase (MUTT/ 99.7 4.3E-16 1.5E-20 138.8 11.6 105 212-321 59-165 (205)
13 2w4e_A MUTT/nudix family prote 99.7 4.1E-16 1.4E-20 130.7 10.8 96 222-321 6-104 (145)
14 4dyw_A MUTT/nudix family prote 99.6 7.1E-16 2.4E-20 131.0 11.6 102 217-321 25-128 (157)
15 2b0v_A Nudix hydrolase; struct 99.6 8.5E-16 2.9E-20 128.4 11.3 88 233-321 18-107 (153)
16 3gg6_A Nudix motif 18, nucleos 99.6 1.1E-15 3.9E-20 128.6 12.2 88 220-314 19-107 (156)
17 3gwy_A Putative CTP pyrophosph 99.6 2.2E-15 7.4E-20 124.9 13.7 89 221-314 6-98 (140)
18 2fb1_A Conserved hypothetical 99.6 6.5E-16 2.2E-20 140.2 11.3 107 214-321 6-115 (226)
19 2pbt_A AP4A hydrolase; nudix p 99.6 6.8E-16 2.3E-20 126.0 9.7 90 223-317 6-96 (134)
20 3exq_A Nudix family hydrolase; 99.6 2.1E-15 7.2E-20 128.5 11.8 93 220-313 9-102 (161)
21 3q93_A 7,8-dihydro-8-oxoguanin 99.6 2.5E-15 8.4E-20 130.5 12.4 82 232-314 34-116 (176)
22 1vcd_A NDX1; nudix protein, di 99.6 4.2E-15 1.4E-19 120.2 12.7 83 223-312 4-86 (126)
23 1v8y_A ADP-ribose pyrophosphat 99.6 2.4E-15 8.2E-20 129.1 11.6 102 214-321 27-131 (170)
24 3grn_A MUTT related protein; s 99.6 2.9E-15 9.8E-20 126.0 11.8 92 221-316 8-102 (153)
25 3o8s_A Nudix hydrolase, ADP-ri 99.6 1.4E-15 5E-20 135.4 10.3 100 212-316 61-162 (206)
26 1rya_A GDP-mannose mannosyl hy 99.6 3.6E-15 1.2E-19 125.5 11.3 99 222-321 19-125 (160)
27 3f13_A Putative nudix hydrolas 99.6 4.5E-15 1.5E-19 128.0 11.8 85 223-320 17-101 (163)
28 3f6a_A Hydrolase, nudix family 99.6 3.8E-15 1.3E-19 126.2 10.6 97 222-322 7-121 (159)
29 3gz5_A MUTT/nudix family prote 99.6 1.5E-15 5.3E-20 138.9 8.7 101 212-313 13-118 (240)
30 2yvp_A NDX2, MUTT/nudix family 99.6 1.8E-15 6.1E-20 131.1 8.3 103 215-321 35-141 (182)
31 1q27_A Putative nudix hydrolas 99.6 1.3E-14 4.4E-19 124.1 12.9 96 221-322 34-136 (171)
32 1nqz_A COA pyrophosphatase (MU 99.6 4.2E-15 1.4E-19 130.2 9.5 99 220-322 33-138 (194)
33 1g0s_A Hypothetical 23.7 kDa p 99.6 7.9E-15 2.7E-19 131.2 11.1 92 214-309 51-149 (209)
34 1ktg_A Diadenosine tetraphosph 99.6 9E-15 3.1E-19 120.1 10.4 95 223-321 5-105 (138)
35 3i9x_A MUTT/nudix family prote 99.6 1E-14 3.6E-19 127.3 11.1 76 233-309 45-128 (187)
36 2o1c_A DATP pyrophosphohydrola 99.6 1.8E-14 6.1E-19 119.3 11.9 93 217-312 6-111 (150)
37 1vhz_A ADP compounds hydrolase 99.6 1.9E-14 6.6E-19 127.6 12.5 94 223-321 51-147 (198)
38 3son_A Hypothetical nudix hydr 99.6 2.1E-14 7.2E-19 119.9 12.0 86 231-321 17-111 (149)
39 3oga_A Nucleoside triphosphata 99.6 1.4E-14 4.9E-19 123.2 11.1 62 223-285 29-93 (165)
40 3fk9_A Mutator MUTT protein; s 99.6 9.8E-15 3.3E-19 128.3 10.2 89 223-315 6-96 (188)
41 2azw_A MUTT/nudix family prote 99.6 1.4E-14 4.9E-19 120.1 10.6 92 218-312 15-109 (148)
42 3q91_A Uridine diphosphate glu 99.6 8.3E-15 2.9E-19 132.6 9.7 98 221-321 36-175 (218)
43 2fkb_A Putative nudix hydrolas 99.6 1.5E-14 5E-19 124.8 10.4 95 222-321 38-136 (180)
44 3u53_A BIS(5'-nucleosyl)-tetra 99.5 2.2E-14 7.4E-19 121.3 10.5 90 231-321 21-112 (155)
45 3o6z_A GDP-mannose pyrophospha 99.5 2.6E-14 8.9E-19 125.8 11.1 90 216-310 41-138 (191)
46 3fcm_A Hydrolase, nudix family 99.5 3.5E-14 1.2E-18 125.1 11.7 54 222-277 46-99 (197)
47 3ees_A Probable pyrophosphohyd 99.5 2.2E-14 7.4E-19 119.4 9.5 85 224-312 24-110 (153)
48 2fvv_A Diphosphoinositol polyp 99.5 4.3E-14 1.5E-18 125.2 11.4 74 230-309 50-123 (194)
49 3r03_A Nudix hydrolase; struct 99.5 4.6E-14 1.6E-18 116.7 10.8 88 221-312 8-99 (144)
50 2rrk_A ORF135, CTP pyrophospho 99.5 4.1E-14 1.4E-18 116.2 10.1 76 233-311 19-96 (140)
51 2kdv_A RNA pyrophosphohydrolas 99.5 1.2E-13 4.1E-18 118.5 13.2 66 220-288 7-72 (164)
52 2fml_A MUTT/nudix family prote 99.5 8.8E-14 3E-18 129.5 13.3 100 212-312 30-136 (273)
53 1hzt_A Isopentenyl diphosphate 99.5 2E-14 7E-19 125.6 8.3 98 223-322 34-138 (190)
54 1mk1_A ADPR pyrophosphatase; n 99.5 3.1E-14 1.1E-18 126.7 9.5 98 220-321 42-145 (207)
55 3hhj_A Mutator MUTT protein; n 99.5 3.5E-14 1.2E-18 119.9 9.2 88 220-311 28-119 (158)
56 2pqv_A MUTT/nudix family prote 99.5 2.8E-14 9.7E-19 119.8 8.4 83 223-311 21-104 (154)
57 1f3y_A Diadenosine 5',5'''-P1, 99.5 5.3E-14 1.8E-18 118.5 9.4 60 221-282 14-73 (165)
58 2dsc_A ADP-sugar pyrophosphata 99.5 7.6E-14 2.6E-18 124.7 10.5 87 220-309 61-151 (212)
59 2jvb_A Protein PSU1, mRNA-deca 99.5 2.2E-14 7.6E-19 119.2 6.6 59 221-281 4-62 (146)
60 1mut_A MUTT, nucleoside tripho 99.5 1.8E-14 6E-19 116.6 4.2 82 226-311 9-92 (129)
61 2b06_A MUTT/nudix family prote 99.5 1.5E-13 5.2E-18 115.2 10.1 90 218-312 5-99 (155)
62 2a6t_A SPAC19A8.12; alpha/beta 99.5 3.7E-14 1.3E-18 132.2 6.7 65 217-282 97-161 (271)
63 1k2e_A Nudix homolog; nudix/MU 99.4 2.1E-13 7.1E-18 115.4 8.9 58 223-284 3-60 (156)
64 3e57_A Uncharacterized protein 99.4 1.3E-13 4.4E-18 124.5 7.3 86 226-313 72-169 (211)
65 1x51_A A/G-specific adenine DN 99.4 7.8E-13 2.7E-17 111.4 8.9 87 223-312 21-113 (155)
66 3fjy_A Probable MUTT1 protein; 99.4 7.8E-13 2.7E-17 127.4 9.5 78 232-311 36-123 (364)
67 1u20_A U8 snoRNA-binding prote 99.4 2.7E-13 9.1E-18 121.6 4.5 82 221-310 44-131 (212)
68 2xsq_A U8 snoRNA-decapping enz 99.3 1.3E-12 4.6E-17 117.9 5.0 95 201-311 39-140 (217)
69 2dho_A Isopentenyl-diphosphate 99.3 1.9E-11 6.5E-16 111.6 10.2 99 222-322 60-178 (235)
70 2pny_A Isopentenyl-diphosphate 99.3 1.8E-11 6.2E-16 112.6 10.1 99 222-322 71-189 (246)
71 3fsp_A A/G-specific adenine gl 99.1 8.9E-11 3.1E-15 113.7 7.3 83 223-310 242-326 (369)
72 1q33_A Pyrophosphatase, ADP-ri 99.1 5.3E-10 1.8E-14 105.1 11.9 41 235-277 140-180 (292)
73 3dup_A MUTT/nudix family prote 99.1 2.9E-10 1E-14 107.5 10.1 103 220-322 117-230 (300)
74 3kvh_A Protein syndesmos; NUDT 99.0 1.2E-10 4.1E-15 103.4 2.8 73 234-313 44-118 (214)
75 3qsj_A Nudix hydrolase; struct 99.0 8.5E-10 2.9E-14 100.7 8.2 56 223-278 11-91 (232)
76 3bho_A Cleavage and polyadenyl 98.7 2.4E-08 8.2E-13 89.2 7.7 61 224-287 62-129 (208)
77 3rh7_A Hypothetical oxidoreduc 98.7 5.9E-08 2E-12 92.5 9.4 68 233-312 193-261 (321)
78 3j20_Y 30S ribosomal protein S 96.9 0.00033 1.1E-08 48.7 1.6 33 184-218 17-49 (50)
79 2k4x_A 30S ribosomal protein S 94.1 0.023 8E-07 40.1 2.3 33 184-218 16-48 (55)
80 3h0g_I DNA-directed RNA polyme 87.9 0.31 1.1E-05 39.0 3.0 32 185-218 3-38 (113)
81 4esj_A Type-2 restriction enzy 83.2 0.38 1.3E-05 43.6 1.4 33 181-215 29-65 (257)
82 3qt1_I DNA-directed RNA polyme 80.7 0.88 3E-05 37.6 2.6 30 185-216 23-56 (133)
83 1pft_A TFIIB, PFTFIIBN; N-term 79.9 1.3 4.5E-05 29.9 2.9 31 186-218 5-36 (50)
84 3vdp_A Recombination protein R 76.0 0.32 1.1E-05 43.3 -1.4 90 171-273 53-144 (212)
85 1vdd_A Recombination protein R 74.2 0.37 1.3E-05 43.4 -1.6 75 171-258 39-113 (228)
86 2hf1_A Tetraacyldisaccharide-1 74.1 0.86 2.9E-05 33.3 0.6 35 186-223 8-42 (68)
87 2jr6_A UPF0434 protein NMA0874 73.5 0.91 3.1E-05 33.2 0.7 38 184-224 6-43 (68)
88 2pk7_A Uncharacterized protein 73.5 1.5 5.1E-05 32.1 1.8 41 182-225 4-44 (69)
89 2js4_A UPF0434 protein BB2007; 71.6 0.9 3.1E-05 33.4 0.3 40 184-226 6-45 (70)
90 1vq8_Z 50S ribosomal protein L 71.1 1.1 3.9E-05 34.0 0.7 30 184-215 25-54 (83)
91 2con_A RUH-035 protein, NIN on 71.1 1.4 4.8E-05 33.2 1.2 14 185-198 29-42 (79)
92 2jny_A Uncharacterized BCR; st 70.1 1.2 4.1E-05 32.5 0.6 40 181-223 5-44 (67)
93 1twf_I B12.6, DNA-directed RNA 69.0 2 7E-05 34.6 1.9 31 185-217 3-37 (122)
94 2kpi_A Uncharacterized protein 68.7 2.2 7.6E-05 29.8 1.8 38 182-222 6-43 (56)
95 3sgi_A DNA ligase; HET: DNA AM 68.3 1.1 3.6E-05 46.1 0.0 30 187-216 416-447 (615)
96 3m7n_A Putative uncharacterize 65.1 3.1 0.00011 35.6 2.4 34 184-221 138-171 (179)
97 1twf_L ABC10-alpha, DNA-direct 65.1 2.9 0.0001 30.7 1.9 31 186-219 28-59 (70)
98 1dl6_A Transcription factor II 62.3 4.4 0.00015 28.4 2.3 32 183-216 8-40 (58)
99 4glx_A DNA ligase; inhibitor, 62.0 2.4 8.4E-05 43.1 1.3 29 186-214 405-434 (586)
100 2owo_A DNA ligase; protein-DNA 60.7 2.6 9E-05 43.6 1.3 28 186-213 405-433 (671)
101 2xzm_9 RPS31E; ribosome, trans 59.5 3.6 0.00012 35.9 1.7 32 184-217 111-142 (189)
102 1dgs_A DNA ligase; AMP complex 59.4 2.8 9.4E-05 43.4 1.2 27 186-214 403-429 (667)
103 3h0g_L DNA-directed RNA polyme 57.5 6 0.00021 28.4 2.4 31 184-217 19-49 (63)
104 4ayb_P DNA-directed RNA polyme 56.2 7.1 0.00024 26.4 2.4 33 188-222 5-39 (48)
105 2jrp_A Putative cytoplasmic pr 53.9 3 0.0001 31.5 0.3 11 188-198 33-43 (81)
106 1wd2_A Ariadne-1 protein homol 52.1 8.7 0.0003 27.0 2.5 32 184-215 4-35 (60)
107 3jyw_9 60S ribosomal protein L 50.5 11 0.00036 27.9 2.7 29 185-215 25-53 (72)
108 2ct7_A Ring finger protein 31; 49.6 5.9 0.0002 29.7 1.3 31 183-215 22-52 (86)
109 2fiy_A Protein FDHE homolog; F 49.5 7.4 0.00025 36.4 2.2 14 185-198 181-194 (309)
110 3u5c_f 40S ribosomal protein S 49.2 8.6 0.00029 32.1 2.4 33 183-217 115-149 (152)
111 1ee8_A MUTM (FPG) protein; bet 49.0 7.6 0.00026 35.4 2.2 27 186-214 235-263 (266)
112 1ffk_W Ribosomal protein L37AE 48.0 18 0.00063 26.6 3.7 32 182-215 23-54 (73)
113 1k3x_A Endonuclease VIII; hydr 47.9 7 0.00024 35.5 1.8 29 183-213 231-261 (262)
114 2zkr_2 60S ribosomal protein L 47.5 7.4 0.00025 30.3 1.5 27 184-215 14-40 (97)
115 2xzf_A Formamidopyrimidine-DNA 46.6 7.6 0.00026 35.4 1.8 26 187-214 243-270 (271)
116 1gh9_A 8.3 kDa protein (gene M 46.5 5.8 0.0002 29.1 0.8 25 189-217 7-31 (71)
117 1k82_A Formamidopyrimidine-DNA 46.1 7.8 0.00027 35.3 1.8 26 186-213 240-267 (268)
118 3u6p_A Formamidopyrimidine-DNA 44.0 8.7 0.0003 35.1 1.8 28 184-213 243-272 (273)
119 3iz5_m 60S ribosomal protein L 43.0 10 0.00034 29.3 1.7 27 187-215 37-63 (92)
120 3cc2_Z 50S ribosomal protein L 42.6 13 0.00043 29.9 2.3 32 182-215 56-87 (116)
121 3j21_i 50S ribosomal protein L 42.3 11 0.00036 28.6 1.7 30 184-215 33-62 (83)
122 2akl_A PHNA-like protein PA012 42.3 11 0.00038 30.9 1.9 32 185-219 26-57 (138)
123 2apo_B Ribosome biogenesis pro 40.3 10 0.00035 26.9 1.3 25 184-216 4-28 (60)
124 3izc_m 60S ribosomal protein R 40.2 11 0.00039 29.0 1.6 30 184-215 34-63 (92)
125 2zjr_Z 50S ribosomal protein L 35.5 11 0.00039 26.6 0.8 23 186-215 30-52 (60)
126 3k1f_M Transcription initiatio 33.8 18 0.00063 31.3 2.1 34 181-216 13-52 (197)
127 1x3z_A Peptide: N-glycanase; h 33.1 19 0.00066 34.0 2.3 21 176-196 102-129 (335)
128 2a20_A Regulating synaptic mem 32.9 6 0.00021 28.1 -0.9 24 185-208 32-55 (62)
129 3k7a_M Transcription initiatio 30.9 29 0.00098 32.5 3.1 30 186-217 21-53 (345)
130 4a17_Y RPL37A, 60S ribosomal p 29.4 13 0.00045 29.2 0.3 30 184-215 34-63 (103)
131 2k5c_A Uncharacterized protein 28.9 8.6 0.00029 29.1 -0.7 38 183-222 5-67 (95)
132 2aus_D NOP10, ribosome biogene 28.3 16 0.00056 25.9 0.7 25 184-216 3-27 (60)
133 1x4j_A Ring finger protein 38; 28.2 27 0.00091 24.6 1.8 20 180-199 54-73 (75)
134 1iym_A EL5; ring-H2 finger, ub 27.5 32 0.0011 22.3 2.1 18 179-196 36-53 (55)
135 2bay_A PRE-mRNA splicing facto 26.5 19 0.00066 25.0 0.8 23 177-199 29-51 (61)
136 1l8d_A DNA double-strand break 25.7 15 0.00052 28.4 0.1 13 186-198 47-59 (112)
137 2ea6_A Ring finger protein 4; 25.4 30 0.001 23.5 1.6 20 178-197 48-67 (69)
138 3u50_C Telomerase-associated p 25.1 41 0.0014 28.7 2.7 43 186-231 42-84 (172)
139 3bbo_3 Ribosomal protein L33; 24.8 29 0.00099 25.0 1.4 16 185-200 48-63 (66)
140 3fac_A Putative uncharacterize 24.1 9.5 0.00033 29.9 -1.4 14 185-198 66-79 (118)
141 2kr4_A Ubiquitin conjugation f 22.9 33 0.0011 25.2 1.5 20 179-198 41-60 (85)
142 2ecl_A Ring-box protein 2; RNF 22.9 29 0.00099 25.1 1.2 23 177-199 55-77 (81)
143 2kdx_A HYPA, hydrogenase/ureas 22.8 27 0.00091 27.5 1.0 29 183-215 70-99 (119)
144 1k81_A EIF-2-beta, probable tr 22.3 28 0.00094 21.9 0.8 27 188-216 2-31 (36)
145 2ect_A Ring finger protein 126 22.1 38 0.0013 23.8 1.7 20 180-199 46-65 (78)
146 3v2d_5 50S ribosomal protein L 22.0 25 0.00087 24.8 0.7 22 186-214 30-51 (60)
147 3a43_A HYPD, hydrogenase nicke 22.0 29 0.001 28.3 1.2 12 186-197 70-81 (139)
148 2zjr_1 50S ribosomal protein L 21.8 25 0.00085 24.4 0.6 15 186-200 38-52 (55)
149 3w0f_A Endonuclease 8-like 3; 21.7 43 0.0015 30.9 2.3 27 188-216 253-283 (287)
150 2kre_A Ubiquitin conjugation f 21.6 41 0.0014 25.6 1.9 21 178-198 55-75 (100)
151 1wgm_A Ubiquitin conjugation f 21.1 41 0.0014 25.5 1.8 21 178-198 49-69 (98)
152 2ftc_P Mitochondrial ribosomal 20.8 28 0.00095 23.8 0.7 15 186-200 36-50 (52)
153 3j21_e 50S ribosomal protein L 20.1 55 0.0019 23.3 2.1 25 185-214 16-40 (62)
No 1
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=100.00 E-value=3.6e-39 Score=301.81 Aligned_cols=218 Identities=28% Similarity=0.484 Sum_probs=182.3
Q ss_pred CCCCCCeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCcc
Q 020612 59 SSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSL 138 (323)
Q Consensus 59 ~~~~~~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~ 138 (323)
.++...+++++|++++.|+.. ++ +.+....++.. .....+|||.. ++.+||+++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~---------~~~~~~~lg~~--~~~~~~~~~~~----- 72 (269)
T 1vk6_A 17 IEKLDHGWWVVSHEQKLWLPK-GE-------LPYGEAANFDL---------VGQRALQIGEW--QGEPVWLVQQQ----- 72 (269)
T ss_dssp CCTTCEEEEEEEETTEEECGG-GS-------CCEEEGGGGTC---------TTCEEEEEEES--SSSEEEEEECC-----
T ss_pred cCCCCCeEEEEEECCEEEEeC-CC-------cCCCChhhcCc---------ccCceEEEecc--CCEEEEEEecC-----
Confidence 356677999999999999854 21 11222222211 23467899985 78899999875
Q ss_pred cccccccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 139 ASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 139 ~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
.+..+.+||.++.. ...+++++++|++|++|+++++||+.||+++....+++++.|+ .|+..+||
T Consensus 73 ------~~~~~~~lr~~~~~-------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~C~~~~yp 137 (269)
T 1vk6_A 73 ------RRHDMGSVRQVIDL-------DVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCS--HCRERYYP 137 (269)
T ss_dssp ------CSSCEECTTHHHHH-------CHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEECSSSSCEEES--SSSCEECC
T ss_pred ------CCccchhHHHHhcC-------CHHHhHHHHHHHHHHhhhhcCCccccCCCcCccCCCceeeeCC--CCCCEecC
Confidence 14567889998753 2356789999999999999999999999999999999999998 79999999
Q ss_pred CcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (323)
Q Consensus 219 r~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~ 298 (323)
+++|+|+++|.+ +++|||+||.+.+.|+|++|||+||+|||+++||+||++||||+++..++++++++|++ ++
T Consensus 138 ~~~~~viv~v~~--~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~-----~~ 210 (269)
T 1vk6_A 138 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF-----PQ 210 (269)
T ss_dssp CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET-----TE
T ss_pred CCCcEEEEEEEe--CCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCC-----CC
Confidence 999999988876 58999999988778999999999999999999999999999999999999999999985 67
Q ss_pred eEEEEEEEEeeccCCCCCcccccC
Q 020612 299 QLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 299 ~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
++|++|.+.+..+++.++++|+.+
T Consensus 211 ~~~~~f~a~~~~~~~~~~~~E~~~ 234 (269)
T 1vk6_A 211 SLMTAFMAEYDSGDIVIDPKELLE 234 (269)
T ss_dssp EEEEEEEEEEEECCCCCCTTTEEE
T ss_pred EEEEEEEEEECCCCcCCCCcceEE
Confidence 899999998887888887778765
No 2
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.89 E-value=4.9e-23 Score=181.12 Aligned_cols=122 Identities=24% Similarity=0.329 Sum_probs=99.3
Q ss_pred cCCCCCCCCCCCeecc----CCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCC-CCcccceeeecCCC
Q 020612 185 VSRFCGHCGEKTIPKE----AGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPG 259 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~----~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~-~g~w~lPgG~VE~G 259 (323)
+++|||.||+++.... .+.+..|+ .|+..+|++...++.++|++ +++|||+||.+.+ .|.|.+|||+||+|
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~g 77 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICP--KCHTIHYQNPKVIVGCIPEW--ENKVLLCKRAIAPYRGKWTLPAGFMENN 77 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEET--TTTEEECCCCEEEEEEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTT
T ss_pred CcccCchhCCccccccccCCCCcceECC--CCCCccCCCCceEEEEEEEe--CCEEEEEEccCCCCCCeEECceeeccCC
Confidence 5899999999997642 34566897 79999999988888888777 5899999998633 78999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeeccCCCC
Q 020612 260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINV 315 (323)
Q Consensus 260 Es~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~~i~~ 315 (323)
||+++||+||++||||+++....+++.+.++. ...+++.|.+....+.+..
T Consensus 78 Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~ 128 (189)
T 3cng_A 78 ETLVQGAARETLEEANARVEIRELYAVYSLPH-----ISQVYMLFRAKLLDLDFFP 128 (189)
T ss_dssp CCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGG-----GTEEEEEEEEEECCSCCCC
T ss_pred CCHHHHHHHHHHHHHCCccccceeEEEEecCC-----CcEEEEEEEEEeCCCccCC
Confidence 99999999999999999998777777766652 3467788888776555443
No 3
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.82 E-value=6e-21 Score=182.03 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=117.1
Q ss_pred ccchhhhHHHhhh-cchhhhhhhhHHHHH-HHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccE
Q 020612 146 QLCFVELRTVMVA-TDWADQRAMADLAIA-GHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV 223 (323)
Q Consensus 146 ~~~~~~lr~~~~~-~~~~~~~~~~~~~~~-~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv 223 (323)
..+...+|+.+.. .+..+. ...+... +.|..|.+|+++++||+.||.++... ..+. .|+...||++.++
T Consensus 140 ~iSST~IR~~~~~~g~~~~~--i~~lvP~~~va~~I~~w~~~~r~c~~c~~~~~~~--~~~~-----~~~~~~~~~~~~~ 210 (352)
T 2qjt_B 140 NFNATEFRQKFYNGIISKQY--MCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVI--EYKR-----LWLKAPFKPNFVT 210 (352)
T ss_dssp CCCHHHHHHHHHTTCCCGGG--CSCSSTTSHHHHHHHHHTTSHHHHHHHHHHHHHH--HHHH-----HHSSSSSCCEEEE
T ss_pred CCCchHHHHHHhccCcccch--hhhcCChHHHHHHHHHHhcChHHhHhhhhHHHHH--HHHH-----HhcccCCCCCceE
Confidence 3566789998764 321110 1112345 68999999999999999999998432 2222 3678899999999
Q ss_pred EEEEEEeCCCCeEEEEeeccCC-CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEE----EEEEeecCCCCCC-CC
Q 020612 224 VIMLVIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV----YHTSQPWPVGPNS-MP 297 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~~~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~----~~gs~~~~~~~~~-~~ 297 (323)
+.++|++ +++|||+||.+.+ +|.|++|||+||+|||+++||+||++||||+++.... +...+.|.+.... ..
T Consensus 211 v~~vv~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~ 288 (352)
T 2qjt_B 211 VDALVIV--NDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRG 288 (352)
T ss_dssp EEEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTS
T ss_pred EEEEEEE--CCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCCCc
Confidence 9888885 5899999998643 5899999999999999999999999999999986432 3344444432221 12
Q ss_pred eeEEEEEEEEeeccC--CCC-CcccccC
Q 020612 298 CQLMVGFYAYAKSFE--INV-DKEELEG 322 (323)
Q Consensus 298 ~~lmi~f~a~~~~~~--i~~-d~~Eied 322 (323)
..++++|++....++ +.+ +.+|+.+
T Consensus 289 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~ 316 (352)
T 2qjt_B 289 RTISHVGLFVFDQWPSLPEINAADDAKD 316 (352)
T ss_dssp EEEEEEEEEEECSCSSCCCCCCCTTEEE
T ss_pred cEEEEEEEEEEeCCCCCCccCCCccceE
Confidence 357788888776554 332 3455543
No 4
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.74 E-value=1.9e-18 Score=163.59 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=107.7
Q ss_pred chhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEE
Q 020612 148 CFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIML 227 (323)
Q Consensus 148 ~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivl 227 (323)
+-..+|+.+...+...- -. +--.+.+..|..|+.+++||..|+..+... .+.. .|+...||++.++|.++
T Consensus 140 SST~IR~~l~~g~~~~~--~~-lvp~~v~~~i~~~~~~~r~~~l~~~~~~~~------~~~~-~~~~~~~~~~~~~v~~v 209 (341)
T 2qjo_A 140 SSTAIRGAYFEGKEGDY--LD-KVPPAIADYLQTFQKSERYIALCDEYQFLQ------AYKQ-AWATAPYAPTFITTDAV 209 (341)
T ss_dssp CHHHHHHHHHHTCGGGT--TT-TSCHHHHHHHHHHTTSHHHHHHHHHHHHHH------HHHH-TTTTSSSCCCEEEEEEE
T ss_pred CcHHHHHHHHcCCCcch--hh-hCCHHHHHHHHHhcchHHHHHHHHHHHHHH------HHHh-hhhccCCCCCceEEEEE
Confidence 34567887654431110 00 112356788999999999999998865322 1221 27788899999888888
Q ss_pred EEeCCCCeEEEEeeccCC-CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE----EeecCCCCCC-CCeeEE
Q 020612 228 VIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT----SQPWPVGPNS-MPCQLM 301 (323)
Q Consensus 228 V~~~~~~riLL~rr~~~~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g----s~~~~~~~~~-~~~~lm 301 (323)
|++ +++|||+||.+.+ +|.|++|||+||+|||+++||+||++||||+++....+++ .+.|.+.... ....++
T Consensus 210 i~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (341)
T 2qjo_A 210 VVQ--AGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTIT 287 (341)
T ss_dssp EEE--TTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCTTSCEEE
T ss_pred EEe--CCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCCCCCcEEE
Confidence 885 5899999997633 7899999999999999999999999999999987544322 2333322111 124567
Q ss_pred EEEEEEeeccCC-C-CCcccccC
Q 020612 302 VGFYAYAKSFEI-N-VDKEELEG 322 (323)
Q Consensus 302 i~f~a~~~~~~i-~-~d~~Eied 322 (323)
++|++....+++ . .+++|+.+
T Consensus 288 ~~f~~~~~~~~~~~~~~~~e~~~ 310 (341)
T 2qjo_A 288 HAYFIQLPGGELPAVKGGDDAQK 310 (341)
T ss_dssp EEEEEECCSSSCCCCC------C
T ss_pred EEEEEEecCCCcCccCCCCceee
Confidence 888887765543 2 34456543
No 5
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.69 E-value=7.8e-17 Score=134.36 Aligned_cols=93 Identities=26% Similarity=0.299 Sum_probs=68.5
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC-CeeEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM-PCQLM 301 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~-~~~lm 301 (323)
++.++|++ +++|||+|+. .|.|++|||+||+|||+++||+||++||||+++..+.+++...+.+...+. ....+
T Consensus 6 aag~vv~~--~~~vLL~~r~---~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (134)
T 3i7u_A 6 SAGGVLFK--DGEVLLIKTP---SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV 80 (134)
T ss_dssp EEEEEEEE--TTEEEEEECT---TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEeC---CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEE
Confidence 34455555 5899999986 478999999999999999999999999999999888888875544332221 12344
Q ss_pred EEEEEEeeccCCCCCccccc
Q 020612 302 VGFYAYAKSFEINVDKEELE 321 (323)
Q Consensus 302 i~f~a~~~~~~i~~d~~Eie 321 (323)
+.|.+...++++.++ +|+.
T Consensus 81 ~~f~~~~~~~~~~~~-~E~~ 99 (134)
T 3i7u_A 81 KYYLMKYKEGEPRPS-WEVK 99 (134)
T ss_dssp EEEEEEEEEECCCCC-TTSS
T ss_pred EEEEEEEcCCcCcCC-hhhe
Confidence 557777766776665 3544
No 6
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.69 E-value=1.7e-16 Score=135.95 Aligned_cols=99 Identities=32% Similarity=0.358 Sum_probs=67.7
Q ss_pred CCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC
Q 020612 211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290 (323)
Q Consensus 211 ~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~ 290 (323)
.+.....+.+...|.++|++ +++|||+||.+. +|.|++|||++|+|||+++||+||++||||+++....+++.+.++
T Consensus 13 ~~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~ 89 (171)
T 3id9_A 13 KRRLYIENIMQVRVTGILIE--DEKVLLVKQKVA-NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKP 89 (171)
T ss_dssp ---------CEEEEEEEEEE--TTEEEEEECSST-TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEET
T ss_pred hhhhccCCceEEEEEEEEEE--CCEEEEEEEECC-CCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEccc
Confidence 34444444556666666666 589999999863 789999999999999999999999999999999888888887766
Q ss_pred CCCCCCCeeEEEEEEEEeeccCCCC
Q 020612 291 VGPNSMPCQLMVGFYAYAKSFEINV 315 (323)
Q Consensus 291 ~~~~~~~~~lmi~f~a~~~~~~i~~ 315 (323)
... ....++.|.+....+++.+
T Consensus 90 ~~~---~~~~~~~~~~~~~~~~~~~ 111 (171)
T 3id9_A 90 DAS---PSLLHITFLLERIEGEITL 111 (171)
T ss_dssp TSS---SCEEEEEEEEEEC------
T ss_pred CCC---CcEEEEEEEEEEcCCcccC
Confidence 532 3355666777665554443
No 7
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.69 E-value=7.2e-17 Score=136.38 Aligned_cols=99 Identities=28% Similarity=0.331 Sum_probs=68.3
Q ss_pred cccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe-----ecCCCCC
Q 020612 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ-----PWPVGPN 294 (323)
Q Consensus 220 ~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~-----~~~~~~~ 294 (323)
..+++.++|++. +++|||++|. .|.|.+|||+||+|||+++||+||++|||||++....+++.+ .+.+...
T Consensus 20 ~~~~v~~ii~~~-~~~vLL~~r~---~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 95 (153)
T 3eds_A 20 FXPSVAAVIKNE-QGEILFQYPG---GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTYSNG 95 (153)
T ss_dssp EEEEEEEEEBCT-TCCEEEECC------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEECTTS
T ss_pred EeeeEEEEEEcC-CCeEEEEEcC---CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEecccceeeecCCC
Confidence 455666666664 5899998887 789999999999999999999999999999999988888865 2323222
Q ss_pred CCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 295 SMPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 295 ~~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
.....+++.|.+....+++.++++|+.+
T Consensus 96 ~~~~~~~~~f~~~~~~~~~~~~~~E~~~ 123 (153)
T 3eds_A 96 DEVEYIVVVFECEVTSGELRSIDGESLK 123 (153)
T ss_dssp CEEEEEEEEEEEEEEEECCC-------C
T ss_pred CeEEEEEEEEEEEecCCccccCCCcEEE
Confidence 2123467778887777777766666543
No 8
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.67 E-value=5.9e-16 Score=128.00 Aligned_cols=95 Identities=22% Similarity=0.122 Sum_probs=72.0
Q ss_pred cCCcccEEEEEEEe-CCCCe--EEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612 217 YPRVDPVVIMLVID-RENDR--VLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP 293 (323)
Q Consensus 217 ypr~~pvVivlV~~-~~~~r--iLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~ 293 (323)
|++..+++.++|++ +.+++ |||+||.+.+ +.|++|||++|+|||+++||+||++||||+.+....+++.+.++...
T Consensus 5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 83 (139)
T 2yyh_A 5 VKTPLLATDVIIRLWDGENFKGIVLIERKYPP-VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERD 83 (139)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS-CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSC
T ss_pred ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCCcC
Confidence 67777777777765 12467 9999988643 34999999999999999999999999999999888888887765432
Q ss_pred CCCCeeEEEEEEEEeeccCCC
Q 020612 294 NSMPCQLMVGFYAYAKSFEIN 314 (323)
Q Consensus 294 ~~~~~~lmi~f~a~~~~~~i~ 314 (323)
.. .+.+++.|.+.. .+++.
T Consensus 84 ~~-~~~~~~~f~~~~-~~~~~ 102 (139)
T 2yyh_A 84 PR-AHVVSVVWIGDA-QGEPK 102 (139)
T ss_dssp TT-SCEEEEEEEEEE-ESCCC
T ss_pred CC-ceEEEEEEEEec-CCccC
Confidence 22 345667777776 34443
No 9
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.67 E-value=3.2e-16 Score=131.42 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=72.1
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV 302 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi 302 (323)
+|.+++.+ +++|||+||.....|.|.+|||++|+|||+++||+||++||||+++....+++...+.+.. ....+.+
T Consensus 7 ~v~~ii~~--~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~ 82 (153)
T 3shd_A 7 TVACVVHA--EGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPD--KTPFLRF 82 (153)
T ss_dssp EEEEEEEE--TTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTT--SCCEEEE
T ss_pred EEEEEEEe--CCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCC--CceEEEE
Confidence 33344443 5899999997655789999999999999999999999999999999988888887665432 2445667
Q ss_pred EEEEEeeccC-CCCCccccc
Q 020612 303 GFYAYAKSFE-INVDKEELE 321 (323)
Q Consensus 303 ~f~a~~~~~~-i~~d~~Eie 321 (323)
.|.+...... ..++++|+.
T Consensus 83 ~f~~~~~~~~~~~~~~~E~~ 102 (153)
T 3shd_A 83 LFAIELEQICPTQPHDSDID 102 (153)
T ss_dssp EEEEECSSCCCCCCCSTTCC
T ss_pred EEEEEccccCcCCCCcccce
Confidence 7887766443 455556654
No 10
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.66 E-value=7e-16 Score=129.74 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=78.2
Q ss_pred cCCcccEEEEEEEeCCCCeEEEEeeccC-----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612 217 YPRVDPVVIMLVIDRENDRVLLSRQSRF-----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (323)
Q Consensus 217 ypr~~pvVivlV~~~~~~riLL~rr~~~-----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~ 291 (323)
.|....++.++|++. ++++||+||.+. .+|.|.+|||++|+|||+++||+||++||||+.+..+.+++...+.+
T Consensus 9 ~~~~~~~~~~vi~~~-~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~ 87 (159)
T 1sjy_A 9 VPVELRAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRF 87 (159)
T ss_dssp CCCCEEEEEEEEBCT-TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred CCeEEEeEEEEEEeC-CCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEeccc
Confidence 345556667777764 589999999852 46899999999999999999999999999999999888888876554
Q ss_pred CCCCCCeeEEEEEEEEeeccC-CCC-Cccccc
Q 020612 292 GPNSMPCQLMVGFYAYAKSFE-INV-DKEELE 321 (323)
Q Consensus 292 ~~~~~~~~lmi~f~a~~~~~~-i~~-d~~Eie 321 (323)
.. + ....++.|.+....+. +.+ +.+|+.
T Consensus 88 ~~-~-~~~~~~~f~~~~~~~~~~~~~~~~E~~ 117 (159)
T 1sjy_A 88 PD-G-VLILRHVWLAEPEPGQTLAPAFTDEIA 117 (159)
T ss_dssp TT-S-CEEEEEEEEEEECSSCCCCCCCCSSEE
T ss_pred CC-C-ceEEEEEEEEEccCCCccccCCCCcee
Confidence 22 1 3467777888776555 665 556654
No 11
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=136.33 Aligned_cols=106 Identities=24% Similarity=0.259 Sum_probs=70.5
Q ss_pred ccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 020612 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295 (323)
Q Consensus 216 ~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~ 295 (323)
.+++....|.++|++.++++|||+|++...+|.|.+|||+||+|||+++||+||++||||+++....+++..........
T Consensus 21 ~~~~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 100 (199)
T 3h95_A 21 QSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGA 100 (199)
T ss_dssp -----CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC-----
T ss_pred ccCcccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCC
Confidence 45666677778888876789999998766689999999999999999999999999999999987777774322211111
Q ss_pred CCeeEEEEEEEEee--ccCCCCCcccccC
Q 020612 296 MPCQLMVGFYAYAK--SFEINVDKEELEG 322 (323)
Q Consensus 296 ~~~~lmi~f~a~~~--~~~i~~d~~Eied 322 (323)
.....+.|.+... ...+.++++|+.+
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~E~~~ 128 (199)
T 3h95_A 101 -FGKSDMYIICRLKPYSFTINFCQEECLR 128 (199)
T ss_dssp -----CEEEEEEEEESCCCCCCCTTTEEE
T ss_pred -ceeEEEEEEEEEcCCCcccCCCccceee
Confidence 1222333444433 3455566667654
No 12
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.66 E-value=4.3e-16 Score=138.78 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=77.2
Q ss_pred CCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (323)
Q Consensus 212 C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~ 291 (323)
|....|++..++|.++|++ +++|||+|+.. .|.|++|||+||+|||+++||+||++||||+.+....+++.+.+..
T Consensus 59 ~~~~~~~~~~~~v~~vv~~--~~~vLLv~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~ 134 (205)
T 3q1p_A 59 ASETGYQTPKVDIRAVVFQ--NEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEK 134 (205)
T ss_dssp SCCCSSCCCEEEEEEEEEE--TTEEEEEEC-----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHH
T ss_pred ccccCCCCCcceEEEEEEE--CCEEEEEEEcC--CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccc
Confidence 3445578777788888887 58999999874 6899999999999999999999999999999999888888776532
Q ss_pred C--CCCCCeeEEEEEEEEeeccCCCCCccccc
Q 020612 292 G--PNSMPCQLMVGFYAYAKSFEINVDKEELE 321 (323)
Q Consensus 292 ~--~~~~~~~lmi~f~a~~~~~~i~~d~~Eie 321 (323)
. +....+.+.+.|.+....+.+..+ .|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~ 165 (205)
T 3q1p_A 135 HQPSPSATHVYKIFIGCEIIGGEKKTS-IETE 165 (205)
T ss_dssp HSCCCCSSCEEEEEEEEEEEEECCCCC-TTSC
T ss_pred cCCCCCCceEEEEEEEEEecCCccCCC-Ccce
Confidence 1 111234555667777666666654 4443
No 13
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.66 E-value=4.1e-16 Score=130.74 Aligned_cols=96 Identities=24% Similarity=0.216 Sum_probs=64.3
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCee
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ 299 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~ 299 (323)
.+|.+++++. ++++||+++.+.+ ++.|++|||+||+|||+++||+||++||||+++..+.+++.+.... +....
T Consensus 6 ~~v~vi~~~~-~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~---~~~~~ 81 (145)
T 2w4e_A 6 RAVFILPVTA-QGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQP---SISGV 81 (145)
T ss_dssp EEEEEEEEET-TSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCT---TTCCC
T ss_pred CEEEEEEEcC-CCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCC---CccCc
Confidence 4666666765 5789998876543 3489999999999999999999999999999998888887642211 12234
Q ss_pred EEEEEEEEee-ccCCCCCccccc
Q 020612 300 LMVGFYAYAK-SFEINVDKEELE 321 (323)
Q Consensus 300 lmi~f~a~~~-~~~i~~d~~Eie 321 (323)
.++.|++... .+....+++|+.
T Consensus 82 ~~~~f~~~~~~~~~~~~~~~E~~ 104 (145)
T 2w4e_A 82 VFYPLLALGVTLGAAQLEDTETI 104 (145)
T ss_dssp EEEEEEEEEEEEC--------CE
T ss_pred eEEEEEEEecccCCCCCCCCCeE
Confidence 5666777533 334445556654
No 14
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.65 E-value=7.1e-16 Score=130.96 Aligned_cols=102 Identities=23% Similarity=0.178 Sum_probs=75.2
Q ss_pred cCCcccEEEEEEEeCCCCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 020612 217 YPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295 (323)
Q Consensus 217 ypr~~pvVivlV~~~~~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~ 295 (323)
.++...+|.++|++ +++|||+||.+. ..|.|.+|||+||+|||+++||+||++|||||++....+++.+.+.+....
T Consensus 25 ~~~~~~~v~~vi~~--~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 102 (157)
T 4dyw_A 25 TEQPRVGCGAAIVR--DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANG 102 (157)
T ss_dssp -CCCEEEEEEEEEE--TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEETTTT
T ss_pred CCCceeEEEEEEEE--CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeeccCCC
Confidence 34445566666666 589999999853 478999999999999999999999999999999988888888766543222
Q ss_pred CCeeEEEEEEEEeeccCCCC-Cccccc
Q 020612 296 MPCQLMVGFYAYAKSFEINV-DKEELE 321 (323)
Q Consensus 296 ~~~~lmi~f~a~~~~~~i~~-d~~Eie 321 (323)
...+++.|.+....+.+.. +++|+.
T Consensus 103 -~~~~~~~f~~~~~~~~~~~~~~~E~~ 128 (157)
T 4dyw_A 103 -EHWVAPVYLAHAFSGEPRVVEPDRHE 128 (157)
T ss_dssp -EEEEEEEEEESEEESCCCCSCTTTEE
T ss_pred -cEEEEEEEEEEEcCCCcccCCCCcEe
Confidence 3456677777665554433 444543
No 15
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.64 E-value=8.5e-16 Score=128.43 Aligned_cols=88 Identities=27% Similarity=0.294 Sum_probs=66.1
Q ss_pred CCeEEEEeeccCC-CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612 233 NDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF 311 (323)
Q Consensus 233 ~~riLL~rr~~~~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~ 311 (323)
+++|||+||.+.. +|.|.+|||+||+|||+++||+||++||||+++....+++...+.+.... ...+++.|.+.....
T Consensus 18 ~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~ 96 (153)
T 2b0v_A 18 DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNG-TTYLRFTFSGQVVSF 96 (153)
T ss_dssp TTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTT-EEEEEEEEEEEEEEE
T ss_pred CCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCC-cEEEEEEEEEEeCCC
Confidence 5899999998654 78999999999999999999999999999999988888887655432211 334556677766543
Q ss_pred CC-CCCccccc
Q 020612 312 EI-NVDKEELE 321 (323)
Q Consensus 312 ~i-~~d~~Eie 321 (323)
.. ..+++|+.
T Consensus 97 ~~~~~~~~e~~ 107 (153)
T 2b0v_A 97 DPDRKLDTGIV 107 (153)
T ss_dssp CTTSCCCTTEE
T ss_pred CCCCCCCCCee
Confidence 32 33344543
No 16
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=128.63 Aligned_cols=88 Identities=27% Similarity=0.376 Sum_probs=69.6
Q ss_pred cccEEEEEEEeCCCCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612 220 VDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (323)
Q Consensus 220 ~~pvVivlV~~~~~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~ 298 (323)
+..++.+++++. +++|||+|+.+. ..|.|++|||+||+|||+++||+||++||||+++....+++.+... ..
T Consensus 19 ~~~~v~~~i~~~-~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~------~~ 91 (156)
T 3gg6_A 19 VCYVVLAVFLSE-QDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG------PS 91 (156)
T ss_dssp CEEEEEEECBCT-TSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS------TT
T ss_pred eEEEEEEEEEeC-CCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC------CC
Confidence 334555555554 689999999863 3789999999999999999999999999999999999999887643 34
Q ss_pred eEEEEEEEEeeccCCC
Q 020612 299 QLMVGFYAYAKSFEIN 314 (323)
Q Consensus 299 ~lmi~f~a~~~~~~i~ 314 (323)
.+.+.|.+....+++.
T Consensus 92 ~~~~~f~~~~~~~~~~ 107 (156)
T 3gg6_A 92 WVRFVFLARPTGGILK 107 (156)
T ss_dssp EEEEEEEEEEEEECCC
T ss_pred EEEEEEEEEeeCCeec
Confidence 5677788877655444
No 17
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.64 E-value=2.2e-15 Score=124.89 Aligned_cols=89 Identities=19% Similarity=0.113 Sum_probs=68.1
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccC----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRF----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM 296 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~ 296 (323)
..++.++|.+ +++|||+||.+. .+|.|++|||++|+||++++||+||++||||+.+....+++...+.+..
T Consensus 6 ~~~v~~vi~~--~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~--- 80 (140)
T 3gwy_A 6 IEVVAAVIRL--GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPD--- 80 (140)
T ss_dssp EEEEEEEEEE--TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSS---
T ss_pred EEEEEEEEEe--CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCC---
Confidence 4455666665 589999999853 5789999999999999999999999999999999999999987776543
Q ss_pred CeeEEEEEEEEeeccCCC
Q 020612 297 PCQLMVGFYAYAKSFEIN 314 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~~i~ 314 (323)
....++.|.+....+.+.
T Consensus 81 ~~~~~~~f~~~~~~~~~~ 98 (140)
T 3gwy_A 81 FEITMHAFLCHPVGQRYV 98 (140)
T ss_dssp CCEEEEEEEEEECCSCCC
T ss_pred ceEEEEEEEEEecCCccc
Confidence 335667788877655444
No 18
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.64 E-value=6.5e-16 Score=140.15 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=79.6
Q ss_pred CcccCCcccEEEEEEEe--CCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC
Q 020612 214 KRIYPRVDPVVIMLVID--RENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290 (323)
Q Consensus 214 ~~~ypr~~pvVivlV~~--~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~ 290 (323)
...|++...+|.++|+. +++++|||++|.+ +..|.|.+|||+||+|||+++||+||++||||+++..+.+++++.++
T Consensus 6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~ 85 (226)
T 2fb1_A 6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI 85 (226)
T ss_dssp TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence 45567766677777663 4457999999986 44789999999999999999999999999999999988999888765
Q ss_pred CCCCCCCeeEEEEEEEEeeccCCCCCccccc
Q 020612 291 VGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321 (323)
Q Consensus 291 ~~~~~~~~~lmi~f~a~~~~~~i~~d~~Eie 321 (323)
....+ ...+.+.|++.+..+....+.+|+.
T Consensus 86 ~r~~~-~~~v~~~y~a~~~~~~~~~~~~e~~ 115 (226)
T 2fb1_A 86 DRDPG-ERVVSIAYYALININEYDRELVQKH 115 (226)
T ss_dssp TSSSS-SCEEEEEEEEECCTTSSCHHHHHHT
T ss_pred CcCCC-ceEEEEEEEEEecCcccccCCcccc
Confidence 43322 2456677888766544433334443
No 19
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.64 E-value=6.8e-16 Score=126.04 Aligned_cols=90 Identities=26% Similarity=0.287 Sum_probs=68.8
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC-CCeeEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS-MPCQLM 301 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~-~~~~lm 301 (323)
++.++|++ +++|||+||.+ |.|++|||++++|||+++||+||++||||+++....+++...+.+...+ .....+
T Consensus 6 ~~~~vi~~--~~~vLl~~r~~---~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T 2pbt_A 6 SAGGVLFK--DGEVLLIKTPS---NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV 80 (134)
T ss_dssp EEEEEEEE--TTEEEEEECTT---SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEeCC---CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCcEEEEEE
Confidence 45666666 47999999975 8999999999999999999999999999999998888887655443222 123456
Q ss_pred EEEEEEeeccCCCCCc
Q 020612 302 VGFYAYAKSFEINVDK 317 (323)
Q Consensus 302 i~f~a~~~~~~i~~d~ 317 (323)
+.|.+....+.+..++
T Consensus 81 ~~~~~~~~~~~~~~~~ 96 (134)
T 2pbt_A 81 KYYLMKYKEGEPRPSW 96 (134)
T ss_dssp EEEEEEEEEECCCCCT
T ss_pred EEEEEEecCCCcCCCc
Confidence 6677776665555543
No 20
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.62 E-value=2.1e-15 Score=128.52 Aligned_cols=93 Identities=26% Similarity=0.318 Sum_probs=70.7
Q ss_pred cccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612 220 VDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298 (323)
Q Consensus 220 ~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~ 298 (323)
...++.++|++.++++|||+||.+ .+.|.|++|||+||+|||+++||+||++||||+++..+++++.+.+.+.... ..
T Consensus 9 ~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~ 87 (161)
T 3exq_A 9 VELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ-HR 87 (161)
T ss_dssp EEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS-SE
T ss_pred ceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCC-eE
Confidence 345566666665336999999875 3467899999999999999999999999999999999999988777653332 34
Q ss_pred eEEEEEEEEeeccCC
Q 020612 299 QLMVGFYAYAKSFEI 313 (323)
Q Consensus 299 ~lmi~f~a~~~~~~i 313 (323)
..++.|.+....+.+
T Consensus 88 ~~~~~~~~~~~~~~~ 102 (161)
T 3exq_A 88 KLGLLYRASNFTGTL 102 (161)
T ss_dssp EEEEEEEECCEESCC
T ss_pred EEEEEEEEeccCCcc
Confidence 566666665554443
No 21
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.62 E-value=2.5e-15 Score=130.51 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=64.6
Q ss_pred CCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeec
Q 020612 232 ENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS 310 (323)
Q Consensus 232 ~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~ 310 (323)
.+++|||+||.+ ...|.|.+|||+||+|||+++||+||++||||+++..+.+++.+.+.+.... ....++.|.+....
T Consensus 34 ~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~~~~~~f~~~~~~ 112 (176)
T 3q93_A 34 QPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEP-ELMDVHVFCTDSIQ 112 (176)
T ss_dssp CSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCS-CEEEEEEEEESCEE
T ss_pred eCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCC-cEEEEEEEEEECCC
Confidence 368999998864 3578999999999999999999999999999999999999998776554322 34456667775544
Q ss_pred cCCC
Q 020612 311 FEIN 314 (323)
Q Consensus 311 ~~i~ 314 (323)
+.+.
T Consensus 113 ~~~~ 116 (176)
T 3q93_A 113 GTPV 116 (176)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 4443
No 22
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.62 E-value=4.2e-15 Score=120.22 Aligned_cols=83 Identities=29% Similarity=0.371 Sum_probs=65.2
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV 302 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi 302 (323)
++.++|++. +++|||+||++ |.|.+|||++++|||+++|++||++||||+.+....+++...+.+.. ....+.
T Consensus 4 ~~~~vi~~~-~~~vLl~~r~~---g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~ 76 (126)
T 1vcd_A 4 GAGGVVFNA-KREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPK---GVEREV 76 (126)
T ss_dssp EEEEEEECT-TSCEEEEECTT---SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTT---SCEEEE
T ss_pred EEEEEEEcC-CCEEEEEEECC---CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCC---ceEEEE
Confidence 455566664 57999999875 88999999999999999999999999999999988888887665522 234556
Q ss_pred EEEEEeeccC
Q 020612 303 GFYAYAKSFE 312 (323)
Q Consensus 303 ~f~a~~~~~~ 312 (323)
.|.+....+.
T Consensus 77 ~~~~~~~~~~ 86 (126)
T 1vcd_A 77 HWFLMRGEGA 86 (126)
T ss_dssp EEEEEEEESC
T ss_pred EEEEEEcCCC
Confidence 6776655444
No 23
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.62 E-value=2.4e-15 Score=129.11 Aligned_cols=102 Identities=30% Similarity=0.334 Sum_probs=71.1
Q ss_pred CcccCCcccEEEEEEEeCCCCeEEEEeeccC--CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (323)
Q Consensus 214 ~~~ypr~~pvVivlV~~~~~~riLL~rr~~~--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~ 291 (323)
...+.+..++|.+++++ ++++||+|+.+. .+|.|.+|||++|+|||+++||+||++||||+ +..+.+++.+....
T Consensus 27 ~~~~~~~~~~v~vii~~--~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~ 103 (170)
T 1v8y_A 27 RYEIVEHKPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSP 103 (170)
T ss_dssp TEEEEEECCEEEEEEEE--TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCT
T ss_pred eEEEEecCCeEEEEEEE--CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCC
Confidence 44455555678888887 589999988653 46899999999999999999999999999999 98888888764332
Q ss_pred CCCCCCeeEEEEEEEEeec-cCCCCCccccc
Q 020612 292 GPNSMPCQLMVGFYAYAKS-FEINVDKEELE 321 (323)
Q Consensus 292 ~~~~~~~~lmi~f~a~~~~-~~i~~d~~Eie 321 (323)
+ .....+..|++.... ..+..+++|+.
T Consensus 104 ~---~~~~~~~~f~~~~~~~~~~~~~~~E~~ 131 (170)
T 1v8y_A 104 G---FTDEKTHVFLAENLKEVEAHPDEDEAI 131 (170)
T ss_dssp T---TBCCEEEEEEEEEEEECC--------C
T ss_pred C---ccccEEEEEEEEeccccCCCCCCCceE
Confidence 1 233566677776543 34444555654
No 24
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.62 E-value=2.9e-15 Score=125.96 Aligned_cols=92 Identities=25% Similarity=0.319 Sum_probs=71.2
Q ss_pred ccEEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP 297 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~ 297 (323)
..+|.++|++. +++|||++|.+ ..+|.|.+|||++|+|||+++||+||++||||+.+....+++...+.+.. .
T Consensus 8 ~~~v~~vi~~~-~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~---~ 83 (153)
T 3grn_A 8 IISVYALIRNE-KGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTE---K 83 (153)
T ss_dssp EEEEEEEEECT-TCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSS---C
T ss_pred EEEEEEEEEcC-CCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCC---c
Confidence 34555666654 58999999875 35789999999999999999999999999999999888888877655432 3
Q ss_pred eeEEEEEEEEeeccCCCCC
Q 020612 298 CQLMVGFYAYAKSFEINVD 316 (323)
Q Consensus 298 ~~lmi~f~a~~~~~~i~~d 316 (323)
...++.|++....+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (153)
T 3grn_A 84 KVIAIVFDGGYVVADVKLS 102 (153)
T ss_dssp EEEEEEEEEEECCCCCCCC
T ss_pred eEEEEEEEEEecCCcEecC
Confidence 4566777777666665553
No 25
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.61 E-value=1.4e-15 Score=135.43 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV 291 (323)
Q Consensus 212 C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~ 291 (323)
|....|++....|.++|++ +++|||+|+. .|.|++|||+||+|||+++||+||++||||+++....+++.+.+..
T Consensus 61 ~~~~~y~~~~~~v~~vv~~--~~~vLLvrr~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~ 135 (206)
T 3o8s_A 61 CNETGYQTPKLDTRAAIFQ--EDKILLVQEN---DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHK 135 (206)
T ss_dssp -------CCEEEEEEEEEE--TTEEEEEECT---TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHH
T ss_pred ccccCCCCCCccEEEEEEE--CCEEEEEEec---CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccc
Confidence 3344477767777777777 4899999987 7899999999999999999999999999999999999988876421
Q ss_pred C--CCCCCeeEEEEEEEEeeccCCCCC
Q 020612 292 G--PNSMPCQLMVGFYAYAKSFEINVD 316 (323)
Q Consensus 292 ~--~~~~~~~lmi~f~a~~~~~~i~~d 316 (323)
. .....+...+.|.+....+.+..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (206)
T 3o8s_A 136 NNPAKSAHRVTKVFILCRLLGGEFQPN 162 (206)
T ss_dssp HCC-----CEEEEEEEEEEEEECCCCC
T ss_pred cCCCCCCceEEEEEEEEEecCCeecCC
Confidence 1 111123455666676666666554
No 26
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.60 E-value=3.6e-15 Score=125.45 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=71.7
Q ss_pred cEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCCCCC--C-
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPVGPN--S- 295 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~gs~~~~~~~~--~- 295 (323)
.++.++|++. +++|||+||.+ ..+|.|++|||++|+|||+++||+||++||||+.+ ..+.+++...+.+... +
T Consensus 19 ~~v~~vi~~~-~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
T 1rya_A 19 VSLDFIVENS-RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT 97 (160)
T ss_dssp EEEEEEEECT-TSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBS
T ss_pred EEEEEEEEcC-CCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccccCC
Confidence 4556666664 58999999875 33789999999999999999999999999999985 4677777654432211 1
Q ss_pred --CCeeEEEEEEEEeeccCCCCCccccc
Q 020612 296 --MPCQLMVGFYAYAKSFEINVDKEELE 321 (323)
Q Consensus 296 --~~~~lmi~f~a~~~~~~i~~d~~Eie 321 (323)
..+.+++.|.+....+++..+.+|+.
T Consensus 98 ~~~~~~~~~~f~~~~~~~~~~~~~~e~~ 125 (160)
T 1rya_A 98 DFTTHYVVLGFRFRVSEEELLLPDEQHD 125 (160)
T ss_dssp SSCEEEEEEEEEEECCGGGCCCCSSSEE
T ss_pred CcCcEEEEEEEEEEcCccccccCCCccc
Confidence 11456777877776666665555654
No 27
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.60 E-value=4.5e-15 Score=127.96 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=62.8
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV 302 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi 302 (323)
.++++|++. ++++||++|. +|.|++|||+||+|||+++||+||++||||+++..+.+++++.++. ..+.
T Consensus 17 ~~~~~ii~~-~~~vLL~~r~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~-------~~~~ 85 (163)
T 3f13_A 17 RRATAIIEM-PDGVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF-------NAHK 85 (163)
T ss_dssp EEEEEECEE-TTEEEEEECC------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS-------EEEE
T ss_pred EEEEEEEEe-CCEEEEEEEC---CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC-------eEEE
Confidence 333333333 5889999886 5899999999999999999999999999999999999988876652 5666
Q ss_pred EEEEEeeccCCCCCcccc
Q 020612 303 GFYAYAKSFEINVDKEEL 320 (323)
Q Consensus 303 ~f~a~~~~~~i~~d~~Ei 320 (323)
.|++.. .+++..++ |+
T Consensus 86 ~f~~~~-~~~~~~~~-E~ 101 (163)
T 3f13_A 86 VYLCIA-QGQPKPQN-EI 101 (163)
T ss_dssp EEEEEC--CCCCCCT-TC
T ss_pred EEEEEE-CCcCccCC-Cc
Confidence 777754 45555543 44
No 28
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.60 E-value=3.8e-15 Score=126.17 Aligned_cols=97 Identities=26% Similarity=0.265 Sum_probs=69.2
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE-------------ee
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS-------------QP 288 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs-------------~~ 288 (323)
.++.++|++ +++|||+||++ .|.|.+|||+||+|||+++||+||++||||+++..+.+++. ++
T Consensus 7 ~~v~~vi~~--~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (159)
T 3f6a_A 7 FTVSVFIVC--KDKVLLHLHKK--AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI 82 (159)
T ss_dssp EEEEEEEEE--TTEEEEEECSS--SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred EEEEEEEEE--CCEEEEEEcCC--CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence 355566666 58999999976 78999999999999999999999999999999876665532 11
Q ss_pred cCC-----CCCCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 289 WPV-----GPNSMPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 289 ~~~-----~~~~~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
.+. ........+.+.|.+....+++.++.+|+.+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~ 121 (159)
T 3f6a_A 83 NPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKI 121 (159)
T ss_dssp CCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCC
T ss_pred CccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccc
Confidence 110 0001123555778888777777776666543
No 29
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.60 E-value=1.5e-15 Score=138.95 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=72.5
Q ss_pred CCCcccCCcccEEEEEEE--eCCCCeEEEEeecc-CCCCcccceeeecCC--CCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 020612 212 CKKRIYPRVDPVVIMLVI--DRENDRVLLSRQSR-FVPRMWSCIAGFIEP--GESLEEAVRRETWEETGIEVGEVVYHTS 286 (323)
Q Consensus 212 C~~~~ypr~~pvVivlV~--~~~~~riLL~rr~~-~~~g~w~lPgG~VE~--GEs~eeAa~REv~EEtGL~v~~v~~~gs 286 (323)
|....|++...+|.++|+ ++++++|||++|.+ +..|.|++|||+||+ |||+++||+||++||||+++..+.++++
T Consensus 13 ~~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~ 92 (240)
T 3gz5_A 13 YDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCT 92 (240)
T ss_dssp --------CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred cCccccCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEE
Confidence 444566666556655555 44446999999885 447899999999999 9999999999999999999999999998
Q ss_pred eecCCCCCCCCeeEEEEEEEEeeccCC
Q 020612 287 QPWPVGPNSMPCQLMVGFYAYAKSFEI 313 (323)
Q Consensus 287 ~~~~~~~~~~~~~lmi~f~a~~~~~~i 313 (323)
+.++....+ ...+.+.|++.+.....
T Consensus 93 ~~~~~r~~~-~~~~~~~y~a~~~~~~~ 118 (240)
T 3gz5_A 93 VGNNSRDAR-GWSVTVCYTALMSYQAC 118 (240)
T ss_dssp EEESSSSTT-SCEEEEEEEEECCHHHH
T ss_pred eCCCccCCC-ceEEEEEEEEEeccccc
Confidence 877654332 34677888887664433
No 30
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.59 E-value=1.8e-15 Score=131.15 Aligned_cols=103 Identities=25% Similarity=0.242 Sum_probs=74.7
Q ss_pred cccCCcccEEEEEEEeCCCCeEEEEeeccC--CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG 292 (323)
Q Consensus 215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~~--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~ 292 (323)
+.+.+...++.+++++. +++|||+||.+. .+|.|++|||+||+|||+++||+||++||||+++..+.+++.+....
T Consensus 35 ~~~~~~~~~v~v~i~~~-~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~- 112 (182)
T 2yvp_A 35 VYRPGPVAASFVLPVTE-RGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQP- 112 (182)
T ss_dssp EEBCSSCEEEEEEEBCT-TSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCT-
T ss_pred EEEEecCCEEEEEEEcC-CCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCC-
Confidence 34455555667777765 589999998753 36799999999999999999999999999999999888888753322
Q ss_pred CCCCCeeEEEEEEEEee--ccCCCCCccccc
Q 020612 293 PNSMPCQLMVGFYAYAK--SFEINVDKEELE 321 (323)
Q Consensus 293 ~~~~~~~lmi~f~a~~~--~~~i~~d~~Eie 321 (323)
+.....+..|++... .+.+..+.+|+.
T Consensus 113 --~~~~~~~~~f~~~~~~~~~~~~~~~~E~~ 141 (182)
T 2yvp_A 113 --SFTAVVFHPFLALKARVVTPPTLEEGELL 141 (182)
T ss_dssp --TTBCCEEEEEEECSCEECSCCCCCTTCCE
T ss_pred --CccccEEEEEEEeccccCCCCCCCCCceE
Confidence 123456667777533 244445666654
No 31
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.58 E-value=1.3e-14 Score=124.11 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=71.8
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccC---CCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCeecc--EEEEEEee-cCCCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRF---VPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQP-WPVGP 293 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~---~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v~~--v~~~gs~~-~~~~~ 293 (323)
..++.++|++. +++|||+||... .+|.|+ +|||+|++|||+++||+||++||||+++.. +.+++.+. +.+..
T Consensus 34 ~~~v~v~i~~~-~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~ 112 (171)
T 1q27_A 34 VRVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL 112 (171)
T ss_dssp CEEEEEEEEET-TTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCC
T ss_pred ceEEEEEEECC-CCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCC
Confidence 45666677765 579999998542 378998 999999999999999999999999998866 56777765 55422
Q ss_pred CCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612 294 NSMPCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 294 ~~~~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
...+..|.+.. .+++.+++.|+.+
T Consensus 113 ----~~~~~~f~~~~-~~~~~~~~~E~~~ 136 (171)
T 1q27_A 113 ----SSFMCVYELRS-DATPIFNPNDISG 136 (171)
T ss_dssp ----SSEEEEEEEEC-CCCCCSCTTTCSC
T ss_pred ----ccEEEEEEEEE-CCccccCchhhhe
Confidence 12666777766 5566666666554
No 32
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.58 E-value=4.2e-15 Score=130.24 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=71.1
Q ss_pred cccEEEEEEEeCCCC--eEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC
Q 020612 220 VDPVVIMLVIDREND--RVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN 294 (323)
Q Consensus 220 ~~pvVivlV~~~~~~--riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~ 294 (323)
...++++++++. ++ +|||+||.+ ..+|.|++|||+||+|||+++||+||++||||+++..+.+++...+.+..
T Consensus 33 ~~~~~~~v~i~~-~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~- 110 (194)
T 1nqz_A 33 YRRAAVLVALTR-EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTP- 110 (194)
T ss_dssp CEEEEEEEEEES-SSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEET-
T ss_pred CceEEEEEEEec-CCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCC-
Confidence 334555555554 45 899999874 35789999999999999999999999999999999999998887654432
Q ss_pred CCCeeEEEEEEEEeec-cC-CCCCcccccC
Q 020612 295 SMPCQLMVGFYAYAKS-FE-INVDKEELEG 322 (323)
Q Consensus 295 ~~~~~lmi~f~a~~~~-~~-i~~d~~Eied 322 (323)
....+..|.+.... .+ ...+++|+.+
T Consensus 111 --~~~~~~~f~~~~~~~~~~~~~~~~E~~~ 138 (194)
T 1nqz_A 111 --VGFHVTPVLGRIAPEALDTLRVTPEVAQ 138 (194)
T ss_dssp --TTEEEEEEEEEECGGGGGGCCCCTTEEE
T ss_pred --CCeEEEEEEEEecCCccccCCCccceeE
Confidence 23456667776652 33 4556666543
No 33
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.57 E-value=7.9e-15 Score=131.15 Aligned_cols=92 Identities=28% Similarity=0.354 Sum_probs=69.1
Q ss_pred CcccCCcccEEEEEEEeCCCCeEEEEeeccCC-------CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 020612 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286 (323)
Q Consensus 214 ~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~-------~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs 286 (323)
+..+.+. .+|.++++++++++|||+||.+.+ ++.|++|||+||+||++++||+||++||||+++..+.++++
T Consensus 51 r~~~~~~-~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~ 129 (209)
T 1g0s_A 51 REIFERG-HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS 129 (209)
T ss_dssp EEEEECC-CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_pred EEEEeCC-CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE
Confidence 3444443 466667777556899999887643 46799999999999999999999999999999999999887
Q ss_pred eecCCCCCCCCeeEEEEEEEEee
Q 020612 287 QPWPVGPNSMPCQLMVGFYAYAK 309 (323)
Q Consensus 287 ~~~~~~~~~~~~~lmi~f~a~~~ 309 (323)
+. +. .+.....+..|++...
T Consensus 130 ~~-~~--~g~~~~~~~~f~a~~~ 149 (209)
T 1g0s_A 130 FL-AS--PGGTSERSSIMVGEVD 149 (209)
T ss_dssp EE-SC--TTTBCCEEEEEEEECC
T ss_pred Ee-cC--CCccCcEEEEEEEEEc
Confidence 63 21 1123356677787753
No 34
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.57 E-value=9e-15 Score=120.09 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=64.7
Q ss_pred EEEEEEEeCC--CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEE----EEeecCCCCCCC
Q 020612 223 VVIMLVIDRE--NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH----TSQPWPVGPNSM 296 (323)
Q Consensus 223 vVivlV~~~~--~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~----gs~~~~~~~~~~ 296 (323)
++.++|++.+ +++|||+||+ ..+|.|.+|||+||+|||+++||+||++||||+.+..+..+ +...+.+. .
T Consensus 5 ~~~~vi~~~~~~~~~vLl~~r~-~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~---~ 80 (138)
T 1ktg_A 5 AAGLVIYRKLAGKIEFLLLQAS-YPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK---G 80 (138)
T ss_dssp EEEEEEEEEETTEEEEEEEEES-STTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET---T
T ss_pred EEEEEEEEecCCCcEEEEEEcc-CCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC---C
Confidence 4455555432 3589999987 34679999999999999999999999999999976555443 34433322 1
Q ss_pred CeeEEEEEEEEeeccCCCCCccccc
Q 020612 297 PCQLMVGFYAYAKSFEINVDKEELE 321 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~~i~~d~~Eie 321 (323)
.+..++.|.+.........+++|+.
T Consensus 81 ~~~~~~~f~~~~~~~~~~~~~~e~~ 105 (138)
T 1ktg_A 81 KPKSVKYWLAKLNNPDDVQLSHEHQ 105 (138)
T ss_dssp EEEEEEEEEEEECSCCCCCCCTTEE
T ss_pred CceEEEEEEEEecCCcccCCCchhc
Confidence 3456667777766533334445543
No 35
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.57 E-value=1e-14 Score=127.29 Aligned_cols=76 Identities=25% Similarity=0.286 Sum_probs=60.7
Q ss_pred CCeEEEEeecc--------CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEE
Q 020612 233 NDRVLLSRQSR--------FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF 304 (323)
Q Consensus 233 ~~riLL~rr~~--------~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f 304 (323)
+++|||+||.+ ..+|.|.+|||+||+|||+++||+||++|||||++..+.+++.+.++..... ...+.+.|
T Consensus 45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 123 (187)
T 3i9x_A 45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPR-GWIISRAF 123 (187)
T ss_dssp EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTT-SSEEEEEE
T ss_pred CCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCC-CCEEEEEE
Confidence 35899999942 4578999999999999999999999999999999999999998776653332 23455666
Q ss_pred EEEee
Q 020612 305 YAYAK 309 (323)
Q Consensus 305 ~a~~~ 309 (323)
++.+.
T Consensus 124 ~~~~~ 128 (187)
T 3i9x_A 124 YAIVP 128 (187)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 66544
No 36
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.57 E-value=1.8e-14 Score=119.35 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=65.0
Q ss_pred cCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeecc--EEEEEEee---c--
Q 020612 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQP---W-- 289 (323)
Q Consensus 217 ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~--v~~~gs~~---~-- 289 (323)
|++. .++.++|++.+++++||+||... +|.|.+|||++|+|||+++||+||++||||+.+.. +.+++... +
T Consensus 6 ~~~~-~~v~~~i~~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 83 (150)
T 2o1c_A 6 YKRP-VSILVVIYAQDTKRVLMLQRRDD-PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEI 83 (150)
T ss_dssp CBCS-EEEEEEEEETTTCEEEEEECSSS-TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEEC
T ss_pred ccCc-eEEEEEEEeCCCCEEEEEEecCC-CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeee
Confidence 4443 35666677654589999998754 68999999999999999999999999999998865 33443221 1
Q ss_pred ------CCCCCCCCeeEEEEEEEEeeccC
Q 020612 290 ------PVGPNSMPCQLMVGFYAYAKSFE 312 (323)
Q Consensus 290 ------~~~~~~~~~~lmi~f~a~~~~~~ 312 (323)
.+. ++..+..++.|.+....+.
T Consensus 84 ~~~~~~~~~-~~~~~~~~~~f~~~~~~~~ 111 (150)
T 2o1c_A 84 FSHLRHRYA-PGVTRNTESWFCLALPHER 111 (150)
T ss_dssp CGGGGGGBC-TTCCEEEEEEEEEEESSCC
T ss_pred ecccccccC-CCCcceEEEEEEEEcCCCC
Confidence 111 1123466777777765443
No 37
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.56 E-value=1.9e-14 Score=127.62 Aligned_cols=94 Identities=23% Similarity=0.238 Sum_probs=68.9
Q ss_pred EEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l 300 (323)
+|++++++. ++|||+||.+.+ ++.|++|||+||+|||+++||+||++||||+++..+.+++.+....+ .....
T Consensus 51 av~vl~~~~--~~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~---~~~~~ 125 (198)
T 1vhz_A 51 AVMIVPIVD--DHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPS---YFSSK 125 (198)
T ss_dssp EEEEEEEET--TEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTT---TCCCE
T ss_pred EEEEEEEEC--CEEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCC---ccCcE
Confidence 555555664 399999987643 56899999999999999999999999999999998999888754322 23345
Q ss_pred EEEEEEEeec-cCCCCCccccc
Q 020612 301 MVGFYAYAKS-FEINVDKEELE 321 (323)
Q Consensus 301 mi~f~a~~~~-~~i~~d~~Eie 321 (323)
+..|++.... .....+++|..
T Consensus 126 ~~~f~a~~~~~~~~~~~~~E~~ 147 (198)
T 1vhz_A 126 MNIVVAQDLYPESLEGDEPEPL 147 (198)
T ss_dssp EEEEEEEEEEECCCCCCCSSCC
T ss_pred EEEEEEEeCCcccCCCCCCceE
Confidence 6667776543 33445555543
No 38
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.56 E-value=2.1e-14 Score=119.93 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE--EEEEE--e---ecCCCCCCCCeeEEEE
Q 020612 231 RENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTS--Q---PWPVGPNSMPCQLMVG 303 (323)
Q Consensus 231 ~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v--~~~gs--~---~~~~~~~~~~~~lmi~ 303 (323)
.++++|||+||.+ +|.|.+|||+||+|||+++||+||++||||+++... ..... . .|.+ .+.....++.
T Consensus 17 ~~~~~vLl~~r~~--~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 92 (149)
T 3son_A 17 EANYQFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSF--NKPYVVPEYC 92 (149)
T ss_dssp SSSEEEEEEEESS--SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCS--SSCSEEEEEE
T ss_pred CCCeEEEEEEEcC--CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeecc--CCceEeEEEE
Confidence 3457999999986 499999999999999999999999999999988653 22221 1 2222 1123455667
Q ss_pred EEEEee--ccCCCCCccccc
Q 020612 304 FYAYAK--SFEINVDKEELE 321 (323)
Q Consensus 304 f~a~~~--~~~i~~d~~Eie 321 (323)
|.+... .+++.+ .+|+.
T Consensus 93 f~~~~~~~~~~~~~-~~E~~ 111 (149)
T 3son_A 93 FAIDLTSCSYQVTL-SLEHS 111 (149)
T ss_dssp EEEECTTTGGGCCC-CTTEE
T ss_pred EEEEcCCCCCcccC-CCcee
Confidence 887776 456665 24443
No 39
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.56 E-value=1.4e-14 Score=123.15 Aligned_cols=62 Identities=31% Similarity=0.484 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT 285 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g 285 (323)
+++++|++. +++|||+||.. ..+|.|++|||+||+|||+++||+||++||||+++....+++
T Consensus 29 ~~~~~ii~~-~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~ 93 (165)
T 3oga_A 29 TIVCPLIQN-DGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITP 93 (165)
T ss_dssp EEEEEEEEE-TTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred EEEEEEEeC-CCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceee
Confidence 344444444 58999998874 346899999999999999999999999999999987665543
No 40
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.56 E-value=9.8e-15 Score=128.27 Aligned_cols=89 Identities=31% Similarity=0.418 Sum_probs=67.2
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC--CeeE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM--PCQL 300 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~--~~~l 300 (323)
+++++|.+ +++|||+||.+ .|.|.+|||+||+|||+++||+||++||||+++....+++.+.+.+..... ....
T Consensus 6 v~~~vi~~--~~~vLL~~r~~--~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T 3fk9_A 6 VTNCIVVD--HDQVLLLQKPR--RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWM 81 (188)
T ss_dssp EEEEEEEE--TTEEEEEECTT--TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEeCC--CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEE
Confidence 45555555 58999999864 789999999999999999999999999999999988888887665432211 1126
Q ss_pred EEEEEEEeeccCCCC
Q 020612 301 MVGFYAYAKSFEINV 315 (323)
Q Consensus 301 mi~f~a~~~~~~i~~ 315 (323)
++.|.+....+.+..
T Consensus 82 ~~~f~a~~~~~~~~~ 96 (188)
T 3fk9_A 82 LFTFKATEHEGEMLK 96 (188)
T ss_dssp EEEEEESCEESCCCS
T ss_pred EEEEEEECCCCCCcC
Confidence 677777655555443
No 41
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.56 E-value=1.4e-14 Score=120.05 Aligned_cols=92 Identities=22% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec-CCCCCCC
Q 020612 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW-PVGPNSM 296 (323)
Q Consensus 218 pr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~-~~~~~~~ 296 (323)
++..+.+.++|++.++++|||+||. .|.|++|||++|+|||+++||+||++||||+.+..+.+++.+.. .+.....
T Consensus 15 ~~~~~~~~~vi~~~~~~~vLl~~r~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 91 (148)
T 2azw_A 15 YQTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQ 91 (148)
T ss_dssp CEECCEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTT
T ss_pred eeeeeEEEEEEECCCCCeEEEEEcC---CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCC
Confidence 3345566677777545899999974 48999999999999999999999999999999988888776531 1111111
Q ss_pred --CeeEEEEEEEEeeccC
Q 020612 297 --PCQLMVGFYAYAKSFE 312 (323)
Q Consensus 297 --~~~lmi~f~a~~~~~~ 312 (323)
....++.|.+....+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~ 109 (148)
T 2azw_A 92 TAYYNPGYFYVANTWRQL 109 (148)
T ss_dssp EEEEEEEEEEEEEEEEEC
T ss_pred cceEEEEEEEEEEcCcCC
Confidence 2234566766655433
No 42
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.56 E-value=8.3e-15 Score=132.64 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=69.2
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCC---------------------------------CCcccceeeecCC-CCCHHHHH
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFV---------------------------------PRMWSCIAGFIEP-GESLEEAV 266 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~---------------------------------~g~w~lPgG~VE~-GEs~eeAa 266 (323)
..+|.+++++..++++||+||.+++ ++.|++|||+||+ |||+++||
T Consensus 36 ~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA 115 (218)
T 3q91_A 36 HDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVA 115 (218)
T ss_dssp CCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHH
T ss_pred CCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHH
Confidence 4566777777656899999987632 5689999999999 99999999
Q ss_pred HHHHHHHhCCee--ccEEEEEEeecCCCCCCCCeeEEEEEEEEeec------cCCCCCccccc
Q 020612 267 RRETWEETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS------FEINVDKEELE 321 (323)
Q Consensus 267 ~REv~EEtGL~v--~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~------~~i~~d~~Eie 321 (323)
+||++||||+++ ..+.+++.+....+ +....+..|++.... +...++++|+.
T Consensus 116 ~REl~EEtGl~~~~~~l~~l~~~~~~~g---~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ 175 (218)
T 3q91_A 116 CKEAWEECGYHLAPSDLRRVATYWSGVG---LTGSRQTMFYTEVTDAQRSGPGGGLVEEGELI 175 (218)
T ss_dssp HHHHHHHHCBCCCGGGCEEEEEEEEC------CCEEEEEEEEEECGGGBCC---------CCE
T ss_pred HHHHHHHhCCccccCceEEEEEEecCCC---ccceEEEEEEEEECCcccccCCCCCCCCCcEE
Confidence 999999999998 88888887543221 234677778887653 22344555554
No 43
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.55 E-value=1.5e-14 Score=124.77 Aligned_cols=95 Identities=22% Similarity=0.267 Sum_probs=70.6
Q ss_pred cEEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP 297 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~ 297 (323)
.++.++|++. +++|||++|.. ..+|.|.+ |||++|+|||+++||+||++||||+.+..+.+++.+.+... ..
T Consensus 38 ~~~~v~i~~~-~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~---~~ 113 (180)
T 2fkb_A 38 RATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDK---NC 113 (180)
T ss_dssp EEEEEEEECS-SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEET---TE
T ss_pred eEEEEEEECC-CCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCC---Cc
Confidence 3556666664 57899988864 24789999 99999999999999999999999999888888887665432 13
Q ss_pred eeEEEEEEEEeeccCCCCCccccc
Q 020612 298 CQLMVGFYAYAKSFEINVDKEELE 321 (323)
Q Consensus 298 ~~lmi~f~a~~~~~~i~~d~~Eie 321 (323)
...+..|.+. ..+.+.++.+|+.
T Consensus 114 ~~~~~~f~~~-~~~~~~~~~~E~~ 136 (180)
T 2fkb_A 114 RVWGALFSCV-SHGPFALQEDEVS 136 (180)
T ss_dssp EEEEEEEEEE-CCCCCCCCTTTEE
T ss_pred eEEEEEEEEe-cCCCcCCChhHhh
Confidence 3455666666 3455666666654
No 44
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.54 E-value=2.2e-14 Score=121.30 Aligned_cols=90 Identities=24% Similarity=0.314 Sum_probs=61.3
Q ss_pred CCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC-CCCCeeEEEEEEEEee
Q 020612 231 RENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP-NSMPCQLMVGFYAYAK 309 (323)
Q Consensus 231 ~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~-~~~~~~lmi~f~a~~~ 309 (323)
.++.++||+++++ .++.|.+|||+||+|||+++||+||++||||+++.....++.+.+.... ..........|++...
T Consensus 21 n~~~e~LL~~r~~-~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (155)
T 3u53_A 21 NNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVK 99 (155)
T ss_dssp SCSEEEEEEEESS-SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred CCCcEEEEEEecC-CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecCCCcceeEEEEEEEEEe
Confidence 3457899998874 4578999999999999999999999999999998877766654332111 1112344455666655
Q ss_pred ccCCCC-Cccccc
Q 020612 310 SFEINV-DKEELE 321 (323)
Q Consensus 310 ~~~i~~-d~~Eie 321 (323)
..+..+ ..+|+.
T Consensus 100 ~~~~~~~~~~E~~ 112 (155)
T 3u53_A 100 DYDVEIRLSHEHQ 112 (155)
T ss_dssp CTTCCCCCCTTEE
T ss_pred ccCCccCCCccee
Confidence 443332 233544
No 45
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.54 E-value=2.6e-14 Score=125.83 Aligned_cols=90 Identities=29% Similarity=0.363 Sum_probs=67.5
Q ss_pred ccCCcccEEEEEEEeCCCCeEEEEeeccC--------CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRF--------VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287 (323)
Q Consensus 216 ~ypr~~pvVivlV~~~~~~riLL~rr~~~--------~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~ 287 (323)
.+++.+ +|.+++++.+++++||+|+.+. .++.|++|||+|| |||+++||+||++||||+++..+.+++.+
T Consensus 41 ~~~~~~-av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~ 118 (191)
T 3o6z_A 41 VYDRGN-GATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL 118 (191)
T ss_dssp EEECCC-EEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEE
T ss_pred EEecCC-EEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEE
Confidence 445444 5556666655689999998763 4678999999999 99999999999999999999999999875
Q ss_pred ecCCCCCCCCeeEEEEEEEEeec
Q 020612 288 PWPVGPNSMPCQLMVGFYAYAKS 310 (323)
Q Consensus 288 ~~~~~~~~~~~~lmi~f~a~~~~ 310 (323)
....+ .....+..|++....
T Consensus 119 ~~~~~---~~~~~~~~f~~~~~~ 138 (191)
T 3o6z_A 119 YMSPG---GVTELIHFFIAEYSD 138 (191)
T ss_dssp ESCTT---TBCCEEEEEEEECCT
T ss_pred EeCCC---ccCcEEEEEEEEEcc
Confidence 43221 234566778877653
No 46
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.54 E-value=3.5e-14 Score=125.09 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=47.4
Q ss_pred cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~ 277 (323)
.++.++|++.++++|||+|+.. .|.|.+|||+||+|||+++||+||++||||++
T Consensus 46 ~~~~~vv~~~~~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~ 99 (197)
T 3fcm_A 46 LTSSAFAVNKERNKFLMIHHNI--YNSWAWTGGHSDNEKDQLKVAIKELKEETGVK 99 (197)
T ss_dssp EEEEEEEECTTSCEEEEEEETT--TTEEECEEEECTTCCBHHHHHHHHHHHHHCCS
T ss_pred EEEEEEEEECCCCEEEEEEecC--CCCEECCccccCCCCCHHHHHHHHHHHHHCCC
Confidence 3566677776656999999874 68999999999999999999999999999997
No 47
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.53 E-value=2.2e-14 Score=119.42 Aligned_cols=85 Identities=25% Similarity=0.291 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEE
Q 020612 224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM 301 (323)
Q Consensus 224 VivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lm 301 (323)
++++|++. +++|||++|.. ..+|.|++|||++|+||++++||+||++||||+.+....+++...+.+.. ....+
T Consensus 24 ~~~~i~~~-~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~ 99 (153)
T 3ees_A 24 VVAGFLRK-DGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGD---VGILI 99 (153)
T ss_dssp EEEEEEEE-TTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETT---EEEEE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCC---CeEEE
Confidence 33444443 58999999875 35689999999999999999999999999999999888888776555422 23445
Q ss_pred EEEEEEeeccC
Q 020612 302 VGFYAYAKSFE 312 (323)
Q Consensus 302 i~f~a~~~~~~ 312 (323)
+.|.+....+.
T Consensus 100 ~~~~~~~~~~~ 110 (153)
T 3ees_A 100 LFYEILYWKGE 110 (153)
T ss_dssp EEEEECEEESC
T ss_pred EEEEEEECCCC
Confidence 56666554443
No 48
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.53 E-value=4.3e-14 Score=125.18 Aligned_cols=74 Identities=23% Similarity=0.205 Sum_probs=59.3
Q ss_pred eCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEee
Q 020612 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK 309 (323)
Q Consensus 230 ~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~ 309 (323)
+..+++|||+||.+. +|.|++|||+||+|||+++||+||++||||+++..+.+++.+.+.. ....+..|++.+.
T Consensus 50 ~~~~~~vLLv~r~~~-~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~-----~~~~~~~f~~~~~ 123 (194)
T 2fvv_A 50 SESEEEVLLVSSSRH-PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE-----RKHRTYVYVLIVT 123 (194)
T ss_dssp STTCCEEEEEECSSC-TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT-----TTEEEEEEEEEEE
T ss_pred ECCCCEEEEEEEeCC-CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC-----CceEEEEEEEEEc
Confidence 344689999998753 5899999999999999999999999999999999888888877542 2234555666543
No 49
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.52 E-value=4.6e-14 Score=116.67 Aligned_cols=88 Identities=25% Similarity=0.275 Sum_probs=63.4
Q ss_pred ccEEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCCCCCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVGPNSM 296 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v--~~~gs~~~~~~~~~~ 296 (323)
..++.++|++. +++|||+||.. ..+|.|++|||++|+||++++|++||++||||+.+... ..++...+.+..
T Consensus 8 ~~~~~~vi~~~-~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~--- 83 (144)
T 3r03_A 8 LLVTAAALIDP-DGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDT--- 83 (144)
T ss_dssp EEEEEEEEBCT-TSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS---
T ss_pred eEEEEEEEEcC-CCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCC---
Confidence 34555555554 58999999874 35789999999999999999999999999999998765 444444444321
Q ss_pred CeeEEEEEEEEeeccC
Q 020612 297 PCQLMVGFYAYAKSFE 312 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~~ 312 (323)
....+..|.+....+.
T Consensus 84 ~~~~~~~~~~~~~~~~ 99 (144)
T 3r03_A 84 FHLLMPLYACRSWRGR 99 (144)
T ss_dssp SEEEEEEEEECCCBSC
T ss_pred eEEEEEEEEEEecCCc
Confidence 3455666666554443
No 50
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.52 E-value=4.1e-14 Score=116.21 Aligned_cols=76 Identities=25% Similarity=0.298 Sum_probs=59.4
Q ss_pred CCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeec
Q 020612 233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS 310 (323)
Q Consensus 233 ~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~ 310 (323)
+++|||+||.. ..+|.|++|||++|+||++++|++||++||||+.+....+++...+.+.. ....+..|.+....
T Consensus 19 ~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 95 (140)
T 2rrk_A 19 DGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSG---RIIHLHAWHVPDFH 95 (140)
T ss_dssp TTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETT---EEEEEEEEEESEEE
T ss_pred CCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCC---cEEEEEEEEEEeeC
Confidence 58999999864 34689999999999999999999999999999999888888876655421 22345566665443
Q ss_pred c
Q 020612 311 F 311 (323)
Q Consensus 311 ~ 311 (323)
+
T Consensus 96 ~ 96 (140)
T 2rrk_A 96 G 96 (140)
T ss_dssp E
T ss_pred C
Confidence 3
No 51
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.52 E-value=1.2e-13 Score=118.49 Aligned_cols=66 Identities=32% Similarity=0.493 Sum_probs=57.3
Q ss_pred cccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEee
Q 020612 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP 288 (323)
Q Consensus 220 ~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~ 288 (323)
..++|.++|++. +++|||++|.+ +|.|.+|||++|+|||+++||+||++||||+++..+.+++.+.
T Consensus 7 ~~~~v~~~i~~~-~~~vLl~~r~~--~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~ 72 (164)
T 2kdv_A 7 YRPNVGIVICNR-QGQVMWARRFG--QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTR 72 (164)
T ss_dssp EEEEEEEEEECT-TSEEEEEEETT--CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECS
T ss_pred CCcEEEEEEEcc-CCEEEEEEEcC--CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEec
Confidence 345677777775 58999999875 7899999999999999999999999999999999888888753
No 52
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.52 E-value=8.8e-14 Score=129.53 Aligned_cols=100 Identities=24% Similarity=0.288 Sum_probs=71.5
Q ss_pred CCCcccCCcccEEEEEEEeCC----CCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEE
Q 020612 212 CKKRIYPRVDPVVIMLVIDRE----NDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYH 284 (323)
Q Consensus 212 C~~~~ypr~~pvVivlV~~~~----~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~ 284 (323)
|....|++...+|.++|+... +++|||++|.+ ...|.|.+|||+||+|||+++||+||++||||+++ ..+..+
T Consensus 30 ~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l 109 (273)
T 2fml_A 30 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL 109 (273)
T ss_dssp SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred hhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEE
Confidence 444557776666666665422 34899999976 34689999999999999999999999999999765 456777
Q ss_pred EEeecCCCCCCCCeeEEEEEEEEeeccC
Q 020612 285 TSQPWPVGPNSMPCQLMVGFYAYAKSFE 312 (323)
Q Consensus 285 gs~~~~~~~~~~~~~lmi~f~a~~~~~~ 312 (323)
+++..+..... ...+.+.|++.+....
T Consensus 110 ~~~~~~~r~~~-~~~~~~~y~a~~~~~~ 136 (273)
T 2fml_A 110 HSFSRPDRDPR-GWVVTVSYLAFIGEEP 136 (273)
T ss_dssp EEECCTTSSTT-SSEEEEEEEEECCCCC
T ss_pred EEEcCCCCCCC-ceEEEEEEEEEeCCCC
Confidence 76654432221 2357778888765443
No 53
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.51 E-value=2e-14 Score=125.58 Aligned_cols=98 Identities=19% Similarity=0.331 Sum_probs=69.5
Q ss_pred EEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCeeccE-EEEEEeecCCC-CCCC
Q 020612 223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEV-VYHTSQPWPVG-PNSM 296 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v~~v-~~~gs~~~~~~-~~~~ 296 (323)
+|.++|++. +++|||+||.. ..+|.|++ |||+||+|||+++||+||++||||+++..+ .+++.+.+... .++.
T Consensus 34 ~v~~~i~~~-~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 112 (190)
T 1hzt_A 34 AFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI 112 (190)
T ss_dssp CEEEEEECT-TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred EEEEEEEcC-CCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence 455666664 57999999864 24799999 999999999999999999999999999887 77765543211 1111
Q ss_pred -CeeEEEEEEEEeeccCCCCCcccccC
Q 020612 297 -PCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 297 -~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
...++..|.+... +++.++++|+.+
T Consensus 113 ~~~~~~~~f~~~~~-~~~~~~~~E~~~ 138 (190)
T 1hzt_A 113 VENEVCPVFAARTT-SALQINDDEVMD 138 (190)
T ss_dssp EEEEECCEEEEEBC-SCCCCCTTTEEE
T ss_pred cceEEEEEEEEecC-CCCcCCccceee
Confidence 2345566666643 456666666543
No 54
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.51 E-value=3.1e-14 Score=126.74 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=66.8
Q ss_pred cccEEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecC-CCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612 220 VDPVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIE-PGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM 296 (323)
Q Consensus 220 ~~pvVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE-~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~ 296 (323)
...+|.+++++. +++|||+||.+.+ .+.|++|||+|| +|||+++||+||++||||+++..+.+++.+ +... +.
T Consensus 42 ~~~av~v~i~~~-~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~-~~~~--~~ 117 (207)
T 1mk1_A 42 HFGAVAIVAMDD-NGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDL-DTAP--GF 117 (207)
T ss_dssp ECCEEEEEECCT-TSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE-CSCT--TT
T ss_pred CCCEEEEEEEcC-CCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEE-EcCC--Cc
Confidence 344666666664 6899999987643 569999999999 999999999999999999999988888876 3322 22
Q ss_pred CeeEEEEEEEEeeccCCC---CCccccc
Q 020612 297 PCQLMVGFYAYAKSFEIN---VDKEELE 321 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~~i~---~d~~Eie 321 (323)
....+..|++........ .+++|+.
T Consensus 118 ~~~~~~~f~~~~~~~~~~~~~~~~~E~~ 145 (207)
T 1mk1_A 118 SDESVRVYLATGLREVGRPEAHHEEADM 145 (207)
T ss_dssp BCCCEEEEEEEEEEECCC----------
T ss_pred cccEEEEEEEEccccCCCCCCCCCCceE
Confidence 233556677765433222 3455544
No 55
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.51 E-value=3.5e-14 Score=119.87 Aligned_cols=88 Identities=25% Similarity=0.292 Sum_probs=62.9
Q ss_pred cccEEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCCCCC
Q 020612 220 VDPVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVGPNS 295 (323)
Q Consensus 220 ~~pvVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v--~~~gs~~~~~~~~~ 295 (323)
...++.++|++. +++|||+||.. ..+|.|++|||++|+||++++||+||++||||+.+... ..++...+.+..
T Consensus 28 ~~~~~~~~i~~~-~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-- 104 (158)
T 3hhj_A 28 LLIVVACALLDQ-DNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYET-- 104 (158)
T ss_dssp EEEEEEEEEBCT-TSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS--
T ss_pred eEEEEEEEEEeC-CCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCC--
Confidence 334555555554 58999999874 35789999999999999999999999999999998765 335544444321
Q ss_pred CCeeEEEEEEEEeecc
Q 020612 296 MPCQLMVGFYAYAKSF 311 (323)
Q Consensus 296 ~~~~lmi~f~a~~~~~ 311 (323)
....+..|.+....+
T Consensus 105 -~~~~~~~~~~~~~~~ 119 (158)
T 3hhj_A 105 -FHLLMPLYFCSHYKG 119 (158)
T ss_dssp -CEEEEEEEEESCCBS
T ss_pred -cEEEEEEEEEEECCC
Confidence 234555666654444
No 56
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.51 E-value=2.8e-14 Score=119.79 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=60.9
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-eeEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQLM 301 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~-~~lm 301 (323)
++.++|++ +++|||+|| +|.|.+|||++++|||+++||+||++||||+++...++++...+.+...+.. +.+.
T Consensus 21 ~~~~ii~~--~~~vLl~~r----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (154)
T 2pqv_A 21 RATALIVQ--NHKLLVTKD----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIE 94 (154)
T ss_dssp EEEECCEE--TTEEEEEEE----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEE--CCEEEEEec----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEEE
Confidence 44555555 589999998 5899999999999999999999999999999998777776654433222111 2344
Q ss_pred EEEEEEeecc
Q 020612 302 VGFYAYAKSF 311 (323)
Q Consensus 302 i~f~a~~~~~ 311 (323)
+.|.+....+
T Consensus 95 ~~f~~~~~~~ 104 (154)
T 2pqv_A 95 FHYLVDLLED 104 (154)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEEecCC
Confidence 5666665543
No 57
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.50 E-value=5.3e-14 Score=118.49 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=50.5
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEE
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~ 282 (323)
..++.++|++. +++|||+||.+. +|.|++|||+||+|||+++||+||++||||+++..+.
T Consensus 14 ~~~v~~~i~~~-~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~ 73 (165)
T 1f3y_A 14 RRNVGICLMNN-DKKIFAASRLDI-PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI 73 (165)
T ss_dssp CCEEEEEEECT-TSCEEEEEETTE-EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEE
T ss_pred eeeEEEEEECC-CCcEEEEecCCC-CCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhh
Confidence 45666777775 589999998753 4899999999999999999999999999999876443
No 58
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.50 E-value=7.6e-14 Score=124.67 Aligned_cols=87 Identities=23% Similarity=0.179 Sum_probs=61.5
Q ss_pred cccEEEEEEEeCC--CCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 020612 220 VDPVVIMLVIDRE--NDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295 (323)
Q Consensus 220 ~~pvVivlV~~~~--~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~ 295 (323)
.+.++++.++... +++|||++|.+.+ ++.|++|||+||+||++++||+||++||||+++..+.+++...... +
T Consensus 61 ~~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~---~ 137 (212)
T 2dsc_A 61 ADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDP---G 137 (212)
T ss_dssp CSEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCT---T
T ss_pred CCEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCC---C
Confidence 3445555554432 3589999986643 4589999999999999999999999999999988777766542211 1
Q ss_pred CCeeEEEEEEEEee
Q 020612 296 MPCQLMVGFYAYAK 309 (323)
Q Consensus 296 ~~~~lmi~f~a~~~ 309 (323)
+....+..|++.+.
T Consensus 138 ~~~~~~~~~~a~~~ 151 (212)
T 2dsc_A 138 LSNCTIHIVTVTIN 151 (212)
T ss_dssp TBCCEEEEEEEEEE
T ss_pred ccCceEEEEEEEEe
Confidence 23345666776654
No 59
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.2e-14 Score=119.23 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=50.2
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v 281 (323)
.+++.++|++.++++|||+|+.. .|.|.+|||++++|||+++||+||++||||+++..+
T Consensus 4 i~~~~~~i~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 62 (146)
T 2jvb_A 4 IPVRGAAIFNENLSKILLVQGTE--SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDY 62 (146)
T ss_dssp SCCEEEEEBCTTSSEEEEECCSS--SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSS
T ss_pred eEEEEEEEEeCCCCEEEEEEEcC--CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHh
Confidence 34566677775458999999865 689999999999999999999999999999988654
No 60
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.47 E-value=1.8e-14 Score=116.61 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=61.6
Q ss_pred EEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612 226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG 303 (323)
Q Consensus 226 vlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~ 303 (323)
++|++. +++|||+||.+ ..+|.|++|||++++|||+++|++||++||||+.+..+.+++...+.+.. ....+..
T Consensus 9 ~ii~~~-~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~---~~~~~~~ 84 (129)
T 1mut_A 9 GIIRNE-NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPD---RHITLWF 84 (129)
T ss_dssp EECEET-TTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSS---CEEECCC
T ss_pred EEEEec-CCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCC---ceEEEEE
Confidence 334454 58999999875 35789999999999999999999999999999998877777766554422 2233455
Q ss_pred EEEEeecc
Q 020612 304 FYAYAKSF 311 (323)
Q Consensus 304 f~a~~~~~ 311 (323)
|.+....+
T Consensus 85 ~~~~~~~~ 92 (129)
T 1mut_A 85 WLVERWEG 92 (129)
T ss_dssp EEEEECSS
T ss_pred EEEEccCC
Confidence 66665443
No 61
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.47 E-value=1.5e-13 Score=115.23 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=64.9
Q ss_pred CCcccEEEEEEEeCCCCe----EEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612 218 PRVDPVVIMLVIDRENDR----VLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG 292 (323)
Q Consensus 218 pr~~pvVivlV~~~~~~r----iLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~ 292 (323)
+....++.++|.+ +++ |||++|... ++| |.+|||++|+|||+++||+||++||||+++....+++...+...
T Consensus 5 ~~~~~~~~~ii~~--~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~ 81 (155)
T 2b06_A 5 QLTILTNICLIED--LETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLD 81 (155)
T ss_dssp GCEEEEEEEEEEE--TTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECT
T ss_pred cCcEEEEEEEEEE--CCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccC
Confidence 3445566777776 355 888887653 355 89999999999999999999999999999988888888766542
Q ss_pred CCCCCeeEEEEEEEEeeccC
Q 020612 293 PNSMPCQLMVGFYAYAKSFE 312 (323)
Q Consensus 293 ~~~~~~~lmi~f~a~~~~~~ 312 (323)
. + ....++.|.+....+.
T Consensus 82 ~-~-~~~~~~~~~~~~~~~~ 99 (155)
T 2b06_A 82 T-G-GRYIVICYKATEFSGT 99 (155)
T ss_dssp T-S-CEEEEEEEEECEEEEC
T ss_pred C-C-ceEEEEEEEEEecCCC
Confidence 2 1 3456667777654443
No 62
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.47 E-value=3.7e-14 Score=132.22 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=54.4
Q ss_pred cCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEE
Q 020612 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282 (323)
Q Consensus 217 ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~ 282 (323)
|....+++.++|++.++++|||+||.+. +|.|.+|||+||+|||+++||+||++||||+++..+.
T Consensus 97 ~~~~v~~v~avv~~~~~~~vLLv~r~~~-~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~ 161 (271)
T 2a6t_A 97 YKTRIPVRGAIMLDMSMQQCVLVKGWKA-SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRI 161 (271)
T ss_dssp HSCCCCEEEEEEBCSSSSEEEEEEESST-TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTC
T ss_pred cCCCCCeEEEEEEECCCCEEEEEEEeCC-CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeee
Confidence 4444567777777765589999999763 5899999999999999999999999999999987643
No 63
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.44 E-value=2.1e-13 Score=115.37 Aligned_cols=58 Identities=34% Similarity=0.477 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEE
Q 020612 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH 284 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~ 284 (323)
++.++|++ +++|||+|+.+ .|.|.+|||++|+|||+++|++||++||||+++....++
T Consensus 3 ~~~~vi~~--~~~vLL~~r~~--~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~ 60 (156)
T 1k2e_A 3 VTSGVLVE--NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFT 60 (156)
T ss_dssp EEEEECEE--TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCC
T ss_pred EEEEEEEE--CCEEEEEEEcC--CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccce
Confidence 44555666 68999999875 689999999999999999999999999999998665543
No 64
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.43 E-value=1.3e-13 Score=124.48 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=60.4
Q ss_pred EEEEeCCCCeEEEEeeccCC-----CCcccc-eeeecCCCCC------HHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612 226 MLVIDRENDRVLLSRQSRFV-----PRMWSC-IAGFIEPGES------LEEAVRRETWEETGIEVGEVVYHTSQPWPVGP 293 (323)
Q Consensus 226 vlV~~~~~~riLL~rr~~~~-----~g~w~l-PgG~VE~GEs------~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~ 293 (323)
++|+.. +++|||++|...+ .|.|++ |||+||+||| +++|++||++|||||++....+++...|...+
T Consensus 72 ~~II~~-~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~ 150 (211)
T 3e57_A 72 YVVIMD-GDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTE 150 (211)
T ss_dssp EEEEEE-TTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSH
T ss_pred EEEEEE-CCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCC
Confidence 333443 6899999997532 378998 9999999998 49999999999999999999999998875322
Q ss_pred CCCCeeEEEEEEEEeeccCC
Q 020612 294 NSMPCQLMVGFYAYAKSFEI 313 (323)
Q Consensus 294 ~~~~~~lmi~f~a~~~~~~i 313 (323)
.+ ...+++.|.+....+.+
T Consensus 151 ~~-~~~l~~~f~~~~~~g~~ 169 (211)
T 3e57_A 151 VS-RVHLGALFLGRGKFFSV 169 (211)
T ss_dssp HH-HTEEEEEEEEEEEEEEE
T ss_pred CC-eEEEEEEEEEEeCCcee
Confidence 21 22455567777654443
No 65
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.39 E-value=7.8e-13 Score=111.36 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=63.3
Q ss_pred EEEEEEEeCC--CCeEEEEeecc--CCCCcccceeeecCCCCCHH-HHHHHHHHHHhC-CeeccEEEEEEeecCCCCCCC
Q 020612 223 VVIMLVIDRE--NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLE-EAVRRETWEETG-IEVGEVVYHTSQPWPVGPNSM 296 (323)
Q Consensus 223 vVivlV~~~~--~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~e-eAa~REv~EEtG-L~v~~v~~~gs~~~~~~~~~~ 296 (323)
.++++|.+.. +++|||+||.. ...|+|+||||.+|+||+++ +|++||++|||| +.+..+.+++...+.+..
T Consensus 21 ~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~--- 97 (155)
T 1x51_A 21 SATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH--- 97 (155)
T ss_dssp EEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS---
T ss_pred EEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCC---
Confidence 3444455432 47999999874 45689999999999999997 999999999999 888777777766555432
Q ss_pred CeeEEEEEEEEeeccC
Q 020612 297 PCQLMVGFYAYAKSFE 312 (323)
Q Consensus 297 ~~~lmi~f~a~~~~~~ 312 (323)
....+..|.+....+.
T Consensus 98 ~~~~~~~~~~~~~~~~ 113 (155)
T 1x51_A 98 IKLTYQVYGLALEGQT 113 (155)
T ss_dssp CEEEEEEEEEECSSCC
T ss_pred ccEEEEEEEEEEcCCC
Confidence 2234556766655443
No 66
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.38 E-value=7.8e-13 Score=127.36 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=56.9
Q ss_pred CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC----------CeeEE
Q 020612 232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM----------PCQLM 301 (323)
Q Consensus 232 ~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~----------~~~lm 301 (323)
++.+|||++|.+ .|.|++|||+||+|||+++||+||++||||+++....+++...+.+...+. ....+
T Consensus 36 ~~~~vLLv~r~~--~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 113 (364)
T 3fjy_A 36 DSIEVCIVHRPK--YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHT 113 (364)
T ss_dssp TTEEEEEEEETT--TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CE
T ss_pred CceEEEEEEcCC--CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEE
Confidence 456999999865 589999999999999999999999999999999888888877666543211 13455
Q ss_pred EEEEEEeecc
Q 020612 302 VGFYAYAKSF 311 (323)
Q Consensus 302 i~f~a~~~~~ 311 (323)
..|.+....+
T Consensus 114 ~~f~~~~~~~ 123 (364)
T 3fjy_A 114 LYWMAQPISA 123 (364)
T ss_dssp EEEEEEECCH
T ss_pred EEEEEEecCC
Confidence 6666666543
No 67
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.36 E-value=2.7e-13 Score=121.56 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=62.1
Q ss_pred ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCC-CHHHHHHHHHHHHhCCeeccEE-----EEEEeecCCCCC
Q 020612 221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVV-----YHTSQPWPVGPN 294 (323)
Q Consensus 221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL~v~~v~-----~~gs~~~~~~~~ 294 (323)
..++++++++. +++|||+||. +|.|++|||+||+|| |+++||+||++||||+.+..+. ++++..+.+.
T Consensus 44 ~~~vv~~i~~~-~~~vLl~~r~---~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-- 117 (212)
T 1u20_A 44 SQAKLFDRVPI-RRVLLMMMRF---DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-- 117 (212)
T ss_dssp CCCEETTTEEC-CEEEEEEEET---TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT--
T ss_pred CceEEEEEEec-CCEEEEEEeC---CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC--
Confidence 34555555554 5789998883 689999999999999 9999999999999999987543 6777665542
Q ss_pred CCCeeEEEEEEEEeec
Q 020612 295 SMPCQLMVGFYAYAKS 310 (323)
Q Consensus 295 ~~~~~lmi~f~a~~~~ 310 (323)
....++.|.+....
T Consensus 118 --~~~~~~~f~~~~~~ 131 (212)
T 1u20_A 118 --QKCVTHFYIKELKL 131 (212)
T ss_dssp --SCEEEEEEEEECCH
T ss_pred --CcEEEEEEEEEecC
Confidence 23566777776553
No 68
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.30 E-value=1.3e-12 Score=117.91 Aligned_cols=95 Identities=21% Similarity=0.250 Sum_probs=62.7
Q ss_pred CCccccccCCCCCCcccCCcccEEE-EEEEeCCCCeEEEEeeccCCCCcccceeeecCCCC-CHHHHHHHHHHHHhCCee
Q 020612 201 AGKLKQCSNASCKKRIYPRVDPVVI-MLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEV 278 (323)
Q Consensus 201 ~g~~~~C~~~~C~~~~ypr~~pvVi-vlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL~v 278 (323)
.||... |+...|+ ..+.++ +++... +++||..|. +|.|++|||+||+|| |+++||+||++||||+++
T Consensus 39 ~g~~~~-----~~~~~~~-~~~~~v~~vi~~~--~~~ll~~r~---~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~ 107 (217)
T 2xsq_A 39 SGWRHV-----CHALLYA-PDPGMLFGRIPLR--YAILMQMRF---DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAA 107 (217)
T ss_dssp TTCEEE-----EEEEEEE-EEEEEETTTEEEE--EEEEEEEET---TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGG
T ss_pred CCceeE-----eeeEEEc-CCCcEEEEEEEee--CcEEEEEcc---CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCC
Confidence 455554 4456665 344444 222221 345655544 589999999999999 999999999999999987
Q ss_pred cc-----EEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612 279 GE-----VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF 311 (323)
Q Consensus 279 ~~-----v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~ 311 (323)
.. +.++.+.+... +..+++.|.+....+
T Consensus 108 ~~~~l~~l~~~~~~~~~~-----~~~~~~~f~~~l~~~ 140 (217)
T 2xsq_A 108 AAFRVERTDYRSSHVGSG-----PRVVAHFYAKRLTLE 140 (217)
T ss_dssp GGCCCCGGGEEEEEECSS-----SSEEEEEEEEECCHH
T ss_pred ccceeEEEEEEeecCCCC-----CeEEEEEEEEEeccc
Confidence 62 24555544332 356777777766543
No 69
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.25 E-value=1.9e-11 Score=111.60 Aligned_cols=99 Identities=15% Similarity=0.272 Sum_probs=70.1
Q ss_pred cEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCC------CC---HHHHHHHHHHHHhCCeec-----cEEE
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPG------ES---LEEAVRRETWEETGIEVG-----EVVY 283 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~G------Es---~eeAa~REv~EEtGL~v~-----~v~~ 283 (323)
.++.++|++. +++|||+||+. ..+|+|++| ||++++| |+ +++||+||++|||||.+. .+.+
T Consensus 60 ~av~v~v~~~-~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~ 138 (235)
T 2dho_A 60 RAFSVFLFNT-ENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINY 138 (235)
T ss_dssp EEEEEEEECT-TCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEE
T ss_pred EEEEEEEEcC-CCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEE
Confidence 3566677775 57999999864 458999998 5999999 88 599999999999999865 4678
Q ss_pred EEEeecCCCCCCC--CeeEEEEEEEEeeccCCCCCcccccC
Q 020612 284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 284 ~gs~~~~~~~~~~--~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
++.+.|.....+. .+.+...|.+.. .+++.++++|+.+
T Consensus 139 l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~ 178 (235)
T 2dho_A 139 LTRIHYKAQSDGIWGEHEIDYILLVRM-NVTLNPDPNEIKS 178 (235)
T ss_dssp EEEEEEEEECSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEE
T ss_pred EEEEEEeccCCCccceeEEEEEEEEEE-CCCCcCChHHEEE
Confidence 8776554321111 123455666654 4567777778754
No 70
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.25 E-value=1.8e-11 Score=112.57 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=70.4
Q ss_pred cEEEEEEEeCCCCeEEEEeecc---CCCCccccee-eecCCC------CCH---HHHHHHHHHHHhCCeec-----cEEE
Q 020612 222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIA-GFIEPG------ESL---EEAVRRETWEETGIEVG-----EVVY 283 (323)
Q Consensus 222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPg-G~VE~G------Es~---eeAa~REv~EEtGL~v~-----~v~~ 283 (323)
.++.++|++. +++|||+||+. ..+|+|++|+ |++++| |++ ++||+||++|||||.+. .+.+
T Consensus 71 ~av~v~v~~~-~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~ 149 (246)
T 2pny_A 71 RAFSVVLFNT-KNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVF 149 (246)
T ss_dssp EEEEEEEECT-TCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEE
T ss_pred EEEEEEEEeC-CCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEE
Confidence 4566677775 57999999864 4589999985 999999 887 99999999999999865 3677
Q ss_pred EEEeecCCCCCCC--CeeEEEEEEEEeeccCCCCCcccccC
Q 020612 284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEG 322 (323)
Q Consensus 284 ~gs~~~~~~~~~~--~~~lmi~f~a~~~~~~i~~d~~Eied 322 (323)
++.+.|.....+. .+.+...|++.. .+++.++++|+.+
T Consensus 150 l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~ 189 (246)
T 2pny_A 150 MTIYHHKAKSDRIWGEHEICYLLLVRK-NVTLNPDPSETKS 189 (246)
T ss_dssp EEEEEEEEESSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEE
T ss_pred EEEEEEEecCCCceeeeEEEEEEEEEE-CCCCCCChHHeeE
Confidence 7776543211111 123455666654 4567777788764
No 71
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.10 E-value=8.9e-11 Score=113.67 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=62.4
Q ss_pred EEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612 223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL 300 (323)
Q Consensus 223 vVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l 300 (323)
+++++|.+ .+++|||+||.. ..+|+|+||||++|+| |+++|++||++||||+++....+++...+.+.. ....
T Consensus 242 ~~~~vi~~-~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h---~~~~ 316 (369)
T 3fsp_A 242 LAVAVLAD-DEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSH---LVWQ 316 (369)
T ss_dssp EEEEEEEC-SSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSS---EEEE
T ss_pred EEEEEEEe-CCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcce---EEEE
Confidence 34444454 468999999974 4679999999999999 999999999999999998777777766555432 2345
Q ss_pred EEEEEEEeec
Q 020612 301 MVGFYAYAKS 310 (323)
Q Consensus 301 mi~f~a~~~~ 310 (323)
+..|.+....
T Consensus 317 ~~~~~~~~~~ 326 (369)
T 3fsp_A 317 LTVFPGRLVH 326 (369)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEEcC
Confidence 5666666543
No 72
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.09 E-value=5.3e-10 Score=105.11 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=38.5
Q ss_pred eEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612 235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277 (323)
Q Consensus 235 riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~ 277 (323)
+|||++|.. .|.|.+|||+||+|||+++||+||++||||+.
T Consensus 140 ~vLl~~r~~--~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~ 180 (292)
T 1q33_A 140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNS 180 (292)
T ss_dssp EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCG
T ss_pred EEEEEEecC--CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCc
Confidence 699999876 58999999999999999999999999999997
No 73
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.09 E-value=2.9e-10 Score=107.52 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=70.4
Q ss_pred cccEEEEEEEeCCC--CeEEEEeecc---CCCCcc-cceeeecCCCCCHHHHHHHHHHHHhCCeec---cEEEEEEeecC
Q 020612 220 VDPVVIMLVIDREN--DRVLLSRQSR---FVPRMW-SCIAGFIEPGESLEEAVRRETWEETGIEVG---EVVYHTSQPWP 290 (323)
Q Consensus 220 ~~pvVivlV~~~~~--~riLL~rr~~---~~~g~w-~lPgG~VE~GEs~eeAa~REv~EEtGL~v~---~v~~~gs~~~~ 290 (323)
...+|-+.+++.++ .++||+||+. .++|+| .++||++++|||+++||+||++||+||.+. .+.+.+...|.
T Consensus 117 ~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~ 196 (300)
T 3dup_A 117 RAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYC 196 (300)
T ss_dssp CEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEE
Confidence 34467777777642 2899999973 579999 589999999999999999999999999863 34455544332
Q ss_pred CC-CCCCCeeEEEEEEEEeec-cCCCCCcccccC
Q 020612 291 VG-PNSMPCQLMVGFYAYAKS-FEINVDKEELEG 322 (323)
Q Consensus 291 ~~-~~~~~~~lmi~f~a~~~~-~~i~~d~~Eied 322 (323)
+. ..+....++..|.+.+.. ..++++++|+++
T Consensus 197 ~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~ 230 (300)
T 3dup_A 197 MESPAGIKPDTLFLYDLALPEDFRPHNTDGEMAD 230 (300)
T ss_dssp EEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEE
T ss_pred EecCCCeEEEEEEEEEEEecCCCcCCCCchHhhe
Confidence 21 111223445556555543 234668888875
No 74
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.99 E-value=1.2e-10 Score=103.38 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=53.7
Q ss_pred CeEEEEeeccCCCCcccceeeecCCCC-CHHHHHHHHHHHHhCC-eeccEEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612 234 DRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGI-EVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF 311 (323)
Q Consensus 234 ~riLL~rr~~~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL-~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~ 311 (323)
..||++.|. .|.|+||||+||+|| |+++|++||+.||+|+ .+....|+.+..+.+. ....+..|.+....+
T Consensus 44 ~~iLmQ~R~---~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp----~~V~LHfY~crl~~G 116 (214)
T 3kvh_A 44 FSVLMQMRF---DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP----HRVVAHLYARQLTLE 116 (214)
T ss_dssp EEEEEEEET---TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC--------CEEEEEEEEECCHH
T ss_pred heEEEeeee---CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC----CEEEEEEEEEEeeCC
Confidence 346777665 489999999999999 9999999999999997 5787888888776642 145667777776654
Q ss_pred CC
Q 020612 312 EI 313 (323)
Q Consensus 312 ~i 313 (323)
++
T Consensus 117 e~ 118 (214)
T 3kvh_A 117 QL 118 (214)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 75
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.98 E-value=8.5e-10 Score=100.73 Aligned_cols=56 Identities=29% Similarity=0.466 Sum_probs=44.5
Q ss_pred EEEEEEEeCCC--CeEEEEeecc---CCCCcccceeeecCCCCC--------------------HHHHHHHHHHHHhCCe
Q 020612 223 VVIMLVIDREN--DRVLLSRQSR---FVPRMWSCIAGFIEPGES--------------------LEEAVRRETWEETGIE 277 (323)
Q Consensus 223 vVivlV~~~~~--~riLL~rr~~---~~~g~w~lPgG~VE~GEs--------------------~eeAa~REv~EEtGL~ 277 (323)
++++++.+..+ .+|||+||.. +.+|.|.||||+||+||+ +.+||+||++|||||.
T Consensus 11 A~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~ 90 (232)
T 3qsj_A 11 ATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWL 90 (232)
T ss_dssp EEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCce
Confidence 34444444323 3899999974 357999999999999997 5999999999999996
Q ss_pred e
Q 020612 278 V 278 (323)
Q Consensus 278 v 278 (323)
+
T Consensus 91 l 91 (232)
T 3qsj_A 91 L 91 (232)
T ss_dssp C
T ss_pred e
Confidence 5
No 76
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.71 E-value=2.4e-08 Score=89.25 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=46.6
Q ss_pred EEEEEEeCCC-CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCC------eeccEEEEEEe
Q 020612 224 VIMLVIDREN-DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI------EVGEVVYHTSQ 287 (323)
Q Consensus 224 VivlV~~~~~-~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL------~v~~v~~~gs~ 287 (323)
..+++++..+ .+|||+|+. .+.|.+|||.+|+||+.++|++||+.||+|+ +.....++|.+
T Consensus 62 ~avil~~~~~~phVLLlq~~---~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~w 129 (208)
T 3bho_A 62 EGVLIVHEHRLPHVLLLQLG---TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNW 129 (208)
T ss_dssp EEEEEEEETTEEEEEEEEEE---TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEE
T ss_pred EEEEEEcCCCCcEEEEEEcC---CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEE
Confidence 3444444322 379999974 4699999999999999999999999999994 44556677773
No 77
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=98.66 E-value=5.9e-08 Score=92.54 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=51.3
Q ss_pred CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHh-CCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612 233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET-GIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF 311 (323)
Q Consensus 233 ~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEt-GL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~ 311 (323)
++||||+ . ..| |.+|||.++.++ .++++||++||| |++++...+++.+..+. ..+..+.|.|...++
T Consensus 193 ~g~vLL~--~--~~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L~~v~~~~~-----~~~~~i~f~~~~~~g 260 (321)
T 3rh7_A 193 QGAVFLA--G--NET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFLYSVYEDKS-----DGRQNIVYHALASDG 260 (321)
T ss_dssp SSCEEEB--C--SSE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEEEEEEECTT-----TCCEEEEEEEEECSS
T ss_pred CCEEEEe--e--CCC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceEEEEEEcCC-----CceEEEEEEEEeCCC
Confidence 5899999 2 367 999988665444 459999999997 99999888888887653 224456788876654
Q ss_pred C
Q 020612 312 E 312 (323)
Q Consensus 312 ~ 312 (323)
+
T Consensus 261 ~ 261 (321)
T 3rh7_A 261 A 261 (321)
T ss_dssp C
T ss_pred C
Confidence 3
No 78
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.86 E-value=0.00033 Score=48.75 Aligned_cols=33 Identities=21% Similarity=0.590 Sum_probs=28.9
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
+..+|||+||+...+.....+..|+ .|+.++|.
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~--kCG~t~~~ 49 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACG--KCGYTEWK 49 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECS--SSCCEEEC
T ss_pred EecccCCCCCCceEEecCCCeEECC--CCCCEEEC
Confidence 5689999999998888778889998 79999885
No 79
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=94.14 E-value=0.023 Score=40.08 Aligned_cols=33 Identities=24% Similarity=0.573 Sum_probs=26.4
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
+..+|||.||.-+.......+..|. .|+...|-
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~--kCgyt~~~ 48 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCG--RCGYTEFK 48 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECT--TTCCCEEC
T ss_pred EccccCcCCCCceeEeccCCEEECC--CCCCEEEe
Confidence 4589999999988766666788997 79988764
No 80
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=87.95 E-value=0.31 Score=39.02 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=25.5
Q ss_pred cCCCCCCCCCCCeeccC----CccccccCCCCCCcccC
Q 020612 185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRIYP 218 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~yp 218 (323)
..+|||.||.-|....+ ..+..|. .|+..++.
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~--~C~y~~~~ 38 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACR--NCDYSEIA 38 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECS--SSCCEECC
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECC--CCCCeEEc
Confidence 47899999999988754 3467997 79988764
No 81
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=83.16 E-value=0.38 Score=43.56 Aligned_cols=33 Identities=21% Similarity=0.593 Sum_probs=22.6
Q ss_pred hhhccCCCCCCCCCC-CeeccCC---ccccccCCCCCCc
Q 020612 181 EWHNVSRFCGHCGEK-TIPKEAG---KLKQCSNASCKKR 215 (323)
Q Consensus 181 ~W~~~~~fC~~CG~~-~~~~~~g---~~~~C~~~~C~~~ 215 (323)
.|-..+.|||.||+. +...++. -...|+ .|...
T Consensus 29 ~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~--~C~Ee 65 (257)
T 4esj_A 29 DWVYRQSYCPNCGNNPLNHFENNRPVADFYCN--HCSEE 65 (257)
T ss_dssp HHHHHHCCCTTTCCSSCEEC----CCCEEECT--TTCCE
T ss_pred HHHHHCCcCCCCCChhhhhccCCCcccccccC--Ccchh
Confidence 599999999999994 6554433 335787 68653
No 82
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=80.67 E-value=0.88 Score=37.58 Aligned_cols=30 Identities=30% Similarity=0.664 Sum_probs=23.8
Q ss_pred cCCCCCCCCCCCeeccC----CccccccCCCCCCcc
Q 020612 185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRI 216 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~ 216 (323)
..+|||.||.-|.+.++ .....|. .|+...
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Cr--tCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECR--TCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCS--SSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECC--CCCCcE
Confidence 47999999999988754 3467897 699865
No 83
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=79.88 E-value=1.3 Score=29.86 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCCCCCCC-CCeeccCCccccccCCCCCCcccC
Q 020612 186 SRFCGHCGE-KTIPKEAGKLKQCSNASCKKRIYP 218 (323)
Q Consensus 186 ~~fC~~CG~-~~~~~~~g~~~~C~~~~C~~~~yp 218 (323)
...||.||+ ++..........|+ .||..+-.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~--~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA--KCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES--SSCCBCCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc--ccCCcccc
Confidence 457999999 77766665668998 79986543
No 84
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=76.00 E-value=0.32 Score=43.29 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612 171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS 250 (323)
Q Consensus 171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~ 250 (323)
.+...|.+|.+-..+-++|..||.-+. ......|.+ |+-+..++++|-+. .-++-..+.+.+.|.|-
T Consensus 53 ~~~~La~al~~~~~~i~~C~~C~nlte---~~~C~IC~d--------~~Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~Yh 119 (212)
T 3vdp_A 53 EVRSLSQAIIEAKEKLRYCKICFNITD---KEVCDICSD--------ENRDHSTICVVSHP--MDVVAMEKVKEYKGVYH 119 (212)
T ss_dssp HHHHHHHHHHHHHHHCEECTTTCCEES---SSSCHHHHC--------TTSEEEEEEEESSH--HHHHHHHTTSCCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCcCCCCCCCCC---CCcCCCCCC--------CCCCCCEEEEECCH--HHHHHHHhhCccceEEE
Confidence 345568899999999999999998754 233444432 44466777777654 34555667777789999
Q ss_pred ceeeecCC--CCCHHHHHHHHHHHH
Q 020612 251 CIAGFIEP--GESLEEAVRRETWEE 273 (323)
Q Consensus 251 lPgG~VE~--GEs~eeAa~REv~EE 273 (323)
+.+|.+.| |-.+++--..++.+-
T Consensus 120 VLgG~iSPldGigP~~L~i~~L~~R 144 (212)
T 3vdp_A 120 VLHGVISPIEGVGPEDIRIKELLER 144 (212)
T ss_dssp ECSSCCBTTTTBCGGGTTHHHHHHH
T ss_pred ecCCccCccCCCCccccCHHHHHHH
Confidence 99999876 445555555555443
No 85
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=74.24 E-value=0.37 Score=43.36 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612 171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS 250 (323)
Q Consensus 171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~ 250 (323)
.+...|.+|..-..+-++|..||.-+. ......|. . |+-+..++++|-+. .-++-..+.+.+.|.|-
T Consensus 39 ~~~~La~al~~~~~~i~~C~~C~nlte---~~~C~IC~-----d---~~Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~Yh 105 (228)
T 1vdd_A 39 DIERLASALLEAKRDLHVCPICFNITD---AEKCDVCA-----D---PSRDQRTICVVEEP--GDVIALERSGEYRGLYH 105 (228)
T ss_dssp HHHHHHHHHHHHHHHCEECSSSCCEES---SSSCHHHH-----C---SSSCTTEEEEESSH--HHHHHTTTTSSCCSEEE
T ss_pred HHHHHHHHHHHHHhcCeEcCCCCCCcC---CCcCCCCC-----C---CCcCCCeEEEECCH--HHHHHHHHhcccceEEE
Confidence 345568999999999999999998753 33333443 2 33355566766553 33555666677789999
Q ss_pred ceeeecCC
Q 020612 251 CIAGFIEP 258 (323)
Q Consensus 251 lPgG~VE~ 258 (323)
+.+|.+.|
T Consensus 106 VLgG~lSP 113 (228)
T 1vdd_A 106 VLHGVLSP 113 (228)
T ss_dssp ECSSCCBG
T ss_pred ecCCccCc
Confidence 99998664
No 86
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=74.06 E-value=0.86 Score=33.35 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccE
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV 223 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv 223 (323)
.--||.|++++.........+|+ .|+ ..||-.+-+
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGI 42 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICK--GDR-LAFPIKDGI 42 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEET--TTT-EEEEEETTE
T ss_pred heECCCCCCcCeEeCCCCEEEcC--CCC-cEecCCCCe
Confidence 34699999999988777778997 586 566755543
No 87
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=73.51 E-value=0.91 Score=33.19 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=27.9
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEE
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVV 224 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvV 224 (323)
-..--||.|++++.........+|+ .|+ ..||-.+-+-
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIP 43 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDKQELWSR--QAK-LAYPIKDGIP 43 (68)
T ss_dssp SCCCBCSSSCCBCEEETTTTEEEET--TTT-EEEEEETTEE
T ss_pred hhheECCCCCCcCeEeCCCCEEEcC--CCC-cEecCCCCee
Confidence 3445799999999988777778997 586 5667555443
No 88
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=73.50 E-value=1.5 Score=32.12 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=29.3
Q ss_pred hhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEE
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVI 225 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVi 225 (323)
|.-..--||.|++++.....+...+|+ .|+ ..||-.+-+-+
T Consensus 4 ~LLeiL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPv 44 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLSADKTELISK--GAG-LAYPIRDGIPV 44 (69)
T ss_dssp CGGGTCCCTTTCCCCEECTTSSEEEET--TTT-EEEEEETTEEC
T ss_pred HHHhheeCCCCCCcCeEeCCCCEEEcC--CCC-cEecCcCCeee
Confidence 334456799999999988777778997 586 56675554433
No 89
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=71.64 E-value=0.9 Score=33.42 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=28.7
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEE
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIM 226 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvViv 226 (323)
-..--||.|++++.....+...+|+ .|+ ..||-.+-+-++
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~--~cg-~~YPI~dGIPvm 45 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQRAQAELVCN--ADR-LAFPVRDGVPIM 45 (70)
T ss_dssp CCCCBCTTTCCBEEEETTTTEEEET--TTT-EEEEEETTEECC
T ss_pred hhheECCCCCCcCEEeCCCCEEEcC--CCC-ceecCCCCeeee
Confidence 3445799999999988777778997 586 567765544333
No 90
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=71.11 E-value=1.1 Score=33.97 Aligned_cols=30 Identities=30% Similarity=0.726 Sum_probs=23.9
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.....||.||+.+....+--.+.|+ .|+..
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~--~Cg~~ 54 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCS--YCDYK 54 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEET--TTCCE
T ss_pred cccCcCCCCCCcceeccCCCeEECC--CCCCE
Confidence 3466899999988877776678997 79875
No 91
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=71.06 E-value=1.4 Score=33.19 Aligned_cols=14 Identities=57% Similarity=1.274 Sum_probs=11.4
Q ss_pred cCCCCCCCCCCCee
Q 020612 185 VSRFCGHCGEKTIP 198 (323)
Q Consensus 185 ~~~fC~~CG~~~~~ 198 (323)
.-.|||+||.+|-.
T Consensus 29 ~k~FCp~CGn~TL~ 42 (79)
T 2con_A 29 NRVFCGHCGNKTLK 42 (79)
T ss_dssp SCCSCSSSCCSCCE
T ss_pred ccccccccCcccce
Confidence 46799999998754
No 92
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=70.12 E-value=1.2 Score=32.49 Aligned_cols=40 Identities=13% Similarity=-0.093 Sum_probs=29.6
Q ss_pred hhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccE
Q 020612 181 EWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV 223 (323)
Q Consensus 181 ~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv 223 (323)
.|.-..--||.|++++.....+....|+ .|+ ..||-.+-+
T Consensus 5 ~~LLeiL~CP~ck~~L~~~~~~g~LvC~--~c~-~~YPI~dGI 44 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYLESEQLLVNE--RLN-LAYRIDDGI 44 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEETTTTEEEET--TTT-EEEEEETTE
T ss_pred HHHHHHhCCCCCCCcCeEeCCCCEEEcC--CCC-ccccCCCCE
Confidence 3455566799999999988777778997 576 667755533
No 93
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=69.02 E-value=2 Score=34.64 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=24.1
Q ss_pred cCCCCCCCCCCCeeccC----CccccccCCCCCCccc
Q 020612 185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRIY 217 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~y 217 (323)
..+|||.||.-|...++ .....|. .|+...-
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~--~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECR--TCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECS--SSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECC--cCCCeee
Confidence 46899999999987643 4567897 7998664
No 94
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=68.71 E-value=2.2 Score=29.84 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=27.0
Q ss_pred hhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCccc
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDP 222 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p 222 (323)
|.-..--||.|.+++.... ...+|+++.|+ ..||-.+-
T Consensus 6 ~lL~iL~CP~c~~~L~~~~--~~L~C~~~~c~-~~YPI~dG 43 (56)
T 2kpi_A 6 GLLEILACPACHAPLEERD--AELICTGQDCG-LAYPVRDG 43 (56)
T ss_dssp SCTTSCCCSSSCSCEEEET--TEEEECSSSCC-CEEEEETT
T ss_pred HHHhheeCCCCCCcceecC--CEEEcCCcCCC-cEEeeECC
Confidence 4445567999999988766 55789866786 56675553
No 95
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=68.28 E-value=1.1 Score=46.07 Aligned_cols=30 Identities=33% Similarity=0.734 Sum_probs=0.0
Q ss_pred CCCCCCCCCCee-ccCCccccccCC-CCCCcc
Q 020612 187 RFCGHCGEKTIP-KEAGKLKQCSNA-SCKKRI 216 (323)
Q Consensus 187 ~fC~~CG~~~~~-~~~g~~~~C~~~-~C~~~~ 216 (323)
..||.||+++.. .+++...+|+|+ .|....
T Consensus 416 ~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~ 447 (615)
T 3sgi_A 416 TTCPECGSPLAPEKEGDADIRCPNARGCPGQL 447 (615)
T ss_dssp --------------------------------
T ss_pred CCCCCCCCeeeecCCCCEEEEcCCCCCCHHHH
Confidence 569999999987 567778899986 697643
No 96
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=65.06 E-value=3.1 Score=35.64 Aligned_cols=34 Identities=12% Similarity=0.529 Sum_probs=26.6
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVD 221 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~ 221 (323)
.-.-+|+.||.++.+.. ..++|| .|+.....++.
T Consensus 138 vv~a~~~~~g~~m~~~~--~~~~cp--~~g~~e~RKva 171 (179)
T 3m7n_A 138 VLRALCSNCKTEMVREG--DILKCP--ECGRVEKRKIS 171 (179)
T ss_dssp EEECBCTTTCCBCEECS--SSEECS--SSCCEECCCBC
T ss_pred EEEecccccCCceEECC--CEEECC--CCCCEEEEecc
Confidence 34678999999998865 789998 79988765543
No 97
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=65.06 E-value=2.9 Score=30.66 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCC-cccCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKK-RIYPR 219 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~-~~ypr 219 (323)
.--|+.||...... .+...+|+ .||. ..|..
T Consensus 28 ~Y~C~~CG~~~e~~-~~d~irCp--~CG~RILyK~ 59 (70)
T 1twf_L 28 KYICAECSSKLSLS-RTDAVRCK--DCGHRILLKA 59 (70)
T ss_dssp CEECSSSCCEECCC-TTSTTCCS--SSCCCCCBCC
T ss_pred EEECCCCCCcceeC-CCCCccCC--CCCceEeEec
Confidence 34599999997665 44556897 7998 44443
No 98
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=62.35 E-value=4.4 Score=28.40 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=22.1
Q ss_pred hccCCCCCCCCC-CCeeccCCccccccCCCCCCcc
Q 020612 183 HNVSRFCGHCGE-KTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 183 ~~~~~fC~~CG~-~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
......||.||. .+..........|. .||...
T Consensus 8 ll~~~~Cp~C~~~~lv~D~~~ge~vC~--~CGlVl 40 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVEDYRAGDMICP--ECGLVV 40 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECT--TTCCEE
T ss_pred ccccccCcCCCCCceeEeCCCCeEEeC--CCCCEE
Confidence 344557999998 55555555567897 798764
No 99
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=62.04 E-value=2.4 Score=43.12 Aligned_cols=29 Identities=21% Similarity=0.568 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCeeccCCccccccCC-CCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNA-SCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~-~C~~ 214 (323)
-.+||.||+++...+++...+|+|+ .|..
T Consensus 405 P~~CP~Cgs~~~~~~~~~~~rC~n~~~Cpa 434 (586)
T 4glx_A 405 PTHCPVCGSDVERVEGEAVARCTGGLICGA 434 (586)
T ss_dssp CSBCTTTCCBEECCTTCSCCEESCGGGCHH
T ss_pred CCcCCCCCCchhhhhcccccEeCCCcCcHH
Confidence 3579999999998888889999975 5864
No 100
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=60.67 E-value=2.6 Score=43.58 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCeeccCCccccccC-CCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSN-ASCK 213 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~-~~C~ 213 (323)
-..||.||+++...+++...+|+| ..|.
T Consensus 405 P~~CP~Cgs~l~~~~~~~~~rC~n~~~Cp 433 (671)
T 2owo_A 405 PTHCPVCGSDVERVEGEAVARCTGGLICG 433 (671)
T ss_dssp CSBCTTTCCBEEECTTCSCEEECCGGGCH
T ss_pred CCCCCCCCCEeEEecCCEEEECCCCCCCH
Confidence 468999999998877888889995 4685
No 101
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=59.45 E-value=3.6 Score=35.89 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=26.0
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCccc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
+.++.||+||....+..-..+..|. .|+..++
T Consensus 111 ~~~~~Cp~Cg~g~fma~h~dR~~CG--kC~~t~~ 142 (189)
T 2xzm_9 111 LQQKGCPKCGPGIFMAKHYDRHYCG--KCHLTLK 142 (189)
T ss_dssp ECSEECSTTCSSCEEEECSSCEEET--TTCCCBC
T ss_pred EccccCCccCCCccccCccCCCccC--CceeEEE
Confidence 4579999999998888777778997 7987764
No 102
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=59.44 E-value=2.8 Score=43.40 Aligned_cols=27 Identities=30% Similarity=0.818 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
-..||.||+++ .+++...+|+|+.|..
T Consensus 403 P~~CP~Cgs~l--~~g~~~~~C~n~~Cpa 429 (667)
T 1dgs_A 403 PEACPECGHRL--VKEGKVHRCPNPLCPA 429 (667)
T ss_dssp CSBCTTTCCBC--EEETTEEECCCTTCGG
T ss_pred CCCCCCCCCCc--cCCCeEEEeCCCCChh
Confidence 46899999999 5566778899877964
No 103
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.53 E-value=6 Score=28.42 Aligned_cols=31 Identities=23% Similarity=0.713 Sum_probs=23.0
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCccc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
.-.--|+.||...... .+...+|+ .|+....
T Consensus 19 ~v~Y~C~~Cg~~~~l~-~~~~iRC~--~CG~RIL 49 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ-AKEVIRCR--ECGHRVM 49 (63)
T ss_dssp CCCCBCSSSCCBCCCC-SSSCCCCS--SSCCCCC
T ss_pred CeEEECCCCCCeeecC-CCCceECC--CCCcEEE
Confidence 3445799999998755 45667897 7988653
No 104
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=56.17 E-value=7.1 Score=26.44 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=23.1
Q ss_pred CCCCCCCCCeeccCCc--cccccCCCCCCcccCCccc
Q 020612 188 FCGHCGEKTIPKEAGK--LKQCSNASCKKRIYPRVDP 222 (323)
Q Consensus 188 fC~~CG~~~~~~~~g~--~~~C~~~~C~~~~ypr~~p 222 (323)
-|.+||......+-.. .-.|| -||+..+-++.+
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCp--yCGyrii~KvR~ 39 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCP--YCGYKIIFMVRK 39 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCT--TTCCSCEECCCC
T ss_pred EeeccCCCccHHHHhhCCCcccC--ccCcEEEEEecC
Confidence 4999999987655432 33787 699987665544
No 105
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=53.93 E-value=3 Score=31.51 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=5.8
Q ss_pred CCCCCCCCCee
Q 020612 188 FCGHCGEKTIP 198 (323)
Q Consensus 188 fC~~CG~~~~~ 198 (323)
|||.||++++.
T Consensus 33 fCPeCgq~Le~ 43 (81)
T 2jrp_A 33 LCPDCRQPLQV 43 (81)
T ss_dssp ECSSSCSCCCE
T ss_pred cCcchhhHHHH
Confidence 55555555543
No 106
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.11 E-value=8.7 Score=27.02 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=24.2
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
+..+-||+|+.+.+...+=..+.|..+.|+..
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~ 35 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAE 35 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSC
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCE
Confidence 45789999999999888777778863336543
No 107
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=50.51 E-value=11 Score=27.86 Aligned_cols=29 Identities=38% Similarity=0.775 Sum_probs=22.2
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
....||.||+......+---..|. .|+..
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~--~C~~~ 53 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCS--CCKKT 53 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCS--SSCCC
T ss_pred cCccCCCCCCceeEecCCCeEECC--CCCCE
Confidence 455799999998777776667887 78764
No 108
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=49.62 E-value=5.9 Score=29.68 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=21.0
Q ss_pred hccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
..+.++||.|+..+..........|+ .|+..
T Consensus 22 ~~~~~wCP~C~~~~~~~~~~~~v~C~--~C~~~ 52 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYEREQLEATCP--QCHQT 52 (86)
T ss_dssp CCCEECCSSSCCCEECCCSCSCEECT--TTCCE
T ss_pred CCCEeECcCCCchheecCCCCceEeC--CCCCc
Confidence 34567899999987655555556786 57653
No 109
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=49.54 E-value=7.4 Score=36.40 Aligned_cols=14 Identities=21% Similarity=0.721 Sum_probs=11.3
Q ss_pred cCCCCCCCCCCCee
Q 020612 185 VSRFCGHCGEKTIP 198 (323)
Q Consensus 185 ~~~fC~~CG~~~~~ 198 (323)
.+.|||.||++-..
T Consensus 181 ~~~~CPvCGs~P~~ 194 (309)
T 2fiy_A 181 SRTLCPACGSPPMA 194 (309)
T ss_dssp TCSSCTTTCCCEEE
T ss_pred cCCCCCCCCCcCce
Confidence 47899999999643
No 110
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=49.20 E-value=8.6 Score=32.10 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=27.6
Q ss_pred hccCCCCCC--CCCCCeeccCCccccccCCCCCCccc
Q 020612 183 HNVSRFCGH--CGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 183 ~~~~~fC~~--CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
.+..+.||+ ||.-..+..-..+..|. .|+..++
T Consensus 115 ~~~~~~c~~~~cg~g~fma~h~~r~~cg--kc~~t~~ 149 (152)
T 3u5c_f 115 TKLRRECSNPTCGAGVFLANHKDRLYCG--KCHSVYK 149 (152)
T ss_dssp ECCSCBCCSTTSCSSSBEEECSSCEEES--SSSSCCE
T ss_pred EECcCcCCCccCCCceEecccCCCcccC--CCceEEE
Confidence 456889999 99999888888889997 7987764
No 111
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=48.98 E-value=7.6 Score=35.40 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCeeccCCccc--cccCCCCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLK--QCSNASCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~--~C~~~~C~~ 214 (323)
-+-|++||.+.....-+.+. .|| .|..
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP--~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCP--TCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECT--TTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECC--CCCC
Confidence 36699999999876544344 665 7975
No 112
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=48.01 E-value=18 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.456 Sum_probs=23.5
Q ss_pred hhccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
=......||.||.......+---..|. .|+..
T Consensus 23 ~q~~ky~C~fCgk~~vkR~a~GIW~C~--~C~~~ 54 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRASTSIWVCG--HCGYK 54 (73)
T ss_pred hcccCccCCCCCCceeEEEEeEEEECC--CCCcE
Confidence 345667899999876666655557897 79875
No 113
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=47.87 E-value=7 Score=35.48 Aligned_cols=29 Identities=21% Similarity=0.496 Sum_probs=20.0
Q ss_pred hccCCCCCCCCCCCeeccCCccc--cccCCCCC
Q 020612 183 HNVSRFCGHCGEKTIPKEAGKLK--QCSNASCK 213 (323)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~--~C~~~~C~ 213 (323)
++.-+-|++||.+.....-+.+. .|| .|.
T Consensus 231 gR~g~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 261 (262)
T 1k3x_A 231 HRDGEPCERCGSIIEKTTLSSRPFYWCP--GCQ 261 (262)
T ss_dssp TCTTSBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred CCCcCCCCCCCCEeEEEEECCCCeEECC--CCC
Confidence 44456799999999776544333 665 786
No 114
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=47.50 E-value=7.4 Score=30.31 Aligned_cols=27 Identities=22% Similarity=0.625 Sum_probs=20.5
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.+|..|++||...... .+..|. .||+.
T Consensus 14 KtH~lCrRCG~~sfH~---qK~~Cg--kCGYp 40 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHL---QKSTCG--KCGYP 40 (97)
T ss_dssp CCEECCTTTCSSCEET---TSCCBT--TTCTT
T ss_pred CCCCcCCCCCCccCcC---ccccCc--ccCCc
Confidence 5678999999997744 456786 78864
No 115
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=46.56 E-value=7.6 Score=35.42 Aligned_cols=26 Identities=19% Similarity=0.563 Sum_probs=18.6
Q ss_pred CCCCCCCCCCeeccCCccc--cccCCCCCC
Q 020612 187 RFCGHCGEKTIPKEAGKLK--QCSNASCKK 214 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~--~C~~~~C~~ 214 (323)
+-|++||++.....-+.+. .|| .|..
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP--~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP--VCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT--TTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECC--CCCC
Confidence 6699999999876544344 665 7974
No 116
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=46.52 E-value=5.8 Score=29.13 Aligned_cols=25 Identities=28% Similarity=0.887 Sum_probs=20.4
Q ss_pred CCCCCCCCeeccCCccccccCCCCCCccc
Q 020612 189 CGHCGEKTIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 189 C~~CG~~~~~~~~g~~~~C~~~~C~~~~y 217 (323)
|| ||.......+.....|+ ||..+-
T Consensus 7 C~-C~~~~~~~~~~kT~~C~---CG~~~~ 31 (71)
T 1gh9_A 7 CD-CGRALYSREGAKTRKCV---CGRTVN 31 (71)
T ss_dssp ET-TSCCEEEETTCSEEEET---TTEEEE
T ss_pred CC-CCCEEEEcCCCcEEECC---CCCeee
Confidence 99 99998888877888995 887653
No 117
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=46.06 E-value=7.8 Score=35.33 Aligned_cols=26 Identities=19% Similarity=0.621 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCeeccCCccc--cccCCCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLK--QCSNASCK 213 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~--~C~~~~C~ 213 (323)
-+-|++||.+.....-+.+. .|| .|.
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCR--QCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECC--CCC
Confidence 36699999999776544333 665 786
No 118
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=43.97 E-value=8.7 Score=35.11 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=19.1
Q ss_pred ccCCCCCCCCCCCeeccCCccc--cccCCCCC
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLK--QCSNASCK 213 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~--~C~~~~C~ 213 (323)
+.-+-|++||++.....-+.+. .|| .|.
T Consensus 243 R~g~pC~~CG~~I~~~~~~gR~t~~CP--~CQ 272 (273)
T 3u6p_A 243 RQGNPCKRCGTPIEKTVVAGRGTHYCP--RCQ 272 (273)
T ss_dssp CTTSBCTTTCCBCEEEEETTEEEEECT--TTC
T ss_pred CCcCCCCCCCCeEEEEEECCCCeEECC--CCC
Confidence 3446899999999875433333 665 786
No 119
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=42.99 E-value=10 Score=29.30 Aligned_cols=27 Identities=30% Similarity=0.726 Sum_probs=21.1
Q ss_pred CCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
..||.||+......+---+.|. .|+..
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~--~Cg~~ 63 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCK--DCGKV 63 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECS--SSCCE
T ss_pred ccCcccCCCeeEecCcceEEcC--CCCCE
Confidence 3899999998777666667897 78764
No 120
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=42.55 E-value=13 Score=29.93 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=23.6
Q ss_pred hhccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 182 WHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 182 W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
=.....+||.||.......+--.+.|. .|+..
T Consensus 56 ~q~akytCPfCGk~~vKR~avGIW~C~--~Cgk~ 87 (116)
T 3cc2_Z 56 EMNEDHACPNCGEDRVDRQGTGIWQCS--YCDYK 87 (116)
T ss_dssp HHHSCEECSSSCCEEEEEEETTEEEET--TTCCE
T ss_pred HhccCCcCCCCCCceeEecCceeEECC--CCCCE
Confidence 345677999999876666555567897 79875
No 121
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.29 E-value=11 Score=28.63 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=22.6
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.....||.||+......+---+.|. .|+..
T Consensus 33 ~~ky~CpfCGk~~vkR~a~GIW~C~--kCg~~ 62 (83)
T 3j21_i 33 RQKHTCPVCGRKAVKRISTGIWQCQ--KCGAT 62 (83)
T ss_dssp HSCBCCSSSCSSCEEEEETTEEEET--TTCCE
T ss_pred hcccCCCCCCCceeEecCcCeEEcC--CCCCE
Confidence 3455799999998777666667897 79764
No 122
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=42.28 E-value=11 Score=30.95 Aligned_cols=32 Identities=22% Similarity=0.531 Sum_probs=24.8
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCCcccCC
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr 219 (323)
...-||.|++...... |....|| .|+.++-+.
T Consensus 26 ~lP~CP~C~seytYeD-g~l~vCP--eC~hEW~~~ 57 (138)
T 2akl_A 26 TLPPCPQCNSEYTYED-GALLVCP--ECAHEWSPN 57 (138)
T ss_dssp CSCCCTTTCCCCCEEC-SSSEEET--TTTEEECTT
T ss_pred cCCCCCCCCCcceEec-CCeEECC--ccccccCCc
Confidence 4578999999987664 5568998 899888543
No 123
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=40.31 E-value=10 Score=26.93 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=17.9
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
.+.+.|++||.-|- +.+|| .||...
T Consensus 4 s~mr~C~~CgvYTL------k~~CP--~CG~~T 28 (60)
T 2apo_B 4 MRMKKCPKCGLYTL------KEICP--KCGEKT 28 (60)
T ss_dssp CCCEECTTTCCEES------SSBCS--SSCSBC
T ss_pred hhceeCCCCCCEec------cccCc--CCCCcC
Confidence 35678999987765 55787 687653
No 124
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=40.17 E-value=11 Score=28.98 Aligned_cols=30 Identities=37% Similarity=0.762 Sum_probs=22.4
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.....||.||.......+---+.|. .|+..
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~--~C~~~ 63 (92)
T 3izc_m 34 HARYDCSFCGKKTVKRGAAGIWTCS--CCKKT 63 (92)
T ss_dssp HSCCCCSSSCSSCCEEEETTEEECT--TTCCE
T ss_pred hcCCcCCCCCCceeeecccceEEcC--CCCCE
Confidence 3456799999988777666667887 78764
No 125
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=35.46 E-value=11 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
...|+.||...... +.|+ .||.+
T Consensus 30 l~~c~~cG~~~~pH-----~vc~--~CG~Y 52 (60)
T 2zjr_Z 30 LTECPQCHGKKLSH-----HICP--NCGYY 52 (60)
T ss_dssp CEECTTTCCEECTT-----BCCT--TTCBS
T ss_pred ceECCCCCCEeCCc-----eEcC--CCCcC
Confidence 45699999885432 5776 68844
No 126
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=33.83 E-value=18 Score=31.26 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=22.9
Q ss_pred hhh---ccCCCCCCCCCC---CeeccCCccccccCCCCCCcc
Q 020612 181 EWH---NVSRFCGHCGEK---TIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 181 ~W~---~~~~fC~~CG~~---~~~~~~g~~~~C~~~~C~~~~ 216 (323)
.|. ....+||.||+. +..........|. +||.+.
T Consensus 13 ~~~~~ln~~~~CPECGs~~t~IV~D~erGE~VCs--dCGLVL 52 (197)
T 3k1f_M 13 RRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCA--LCGLVL 52 (197)
T ss_dssp CCSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEET--TTCBBC
T ss_pred ccccccccCeECcCCCCcCCeEEEeCCCCEEEEc--CCCCCc
Confidence 465 445689999983 3333445567897 799864
No 127
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=33.15 E-value=19 Score=34.01 Aligned_cols=21 Identities=33% Similarity=0.803 Sum_probs=17.1
Q ss_pred HHHHHhhhccC-------CCCCCCCCCC
Q 020612 176 ARALLEWHNVS-------RFCGHCGEKT 196 (323)
Q Consensus 176 A~~l~~W~~~~-------~fC~~CG~~~ 196 (323)
-++|++|-++. .-|+.||+++
T Consensus 102 l~~LL~WFk~~fF~wvn~p~C~~Cg~~~ 129 (335)
T 1x3z_A 102 VKELLRYFKQDFFKWCNKPDCNHCGQNT 129 (335)
T ss_dssp HHHHHHHHHHTTCEECSSCCCSSSCSSC
T ss_pred HHHHHHHHHhcCCEeeCCCCccccCCCc
Confidence 57899999775 5699999984
No 128
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=32.88 E-value=6 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.670 Sum_probs=14.4
Q ss_pred cCCCCCCCCCCCeeccCCcccccc
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCS 208 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~ 208 (323)
..+||++||.++.....-..++|.
T Consensus 32 k~r~CaRCGg~v~lr~~k~~WvC~ 55 (62)
T 2a20_A 32 QTKFCARCGGRVSLRSNKVMWVCN 55 (62)
T ss_dssp CCEECTTSEEEEESSTTCEEEEEH
T ss_pred CCeeecccCCEeeecCCeEEEEeh
Confidence 346777777776655554445553
No 129
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=30.86 E-value=29 Score=32.49 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCCCCCCCCC---CeeccCCccccccCCCCCCccc
Q 020612 186 SRFCGHCGEK---TIPKEAGKLKQCSNASCKKRIY 217 (323)
Q Consensus 186 ~~fC~~CG~~---~~~~~~g~~~~C~~~~C~~~~y 217 (323)
...||.||+. +..........|. .||.+.=
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~--~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCA--LCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCS--SSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecC--CCCeEcc
Confidence 4589999995 4444444566898 7998653
No 130
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=29.42 E-value=13 Score=29.24 Aligned_cols=30 Identities=27% Similarity=0.599 Sum_probs=21.8
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKR 215 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~ 215 (323)
.....||.||.......+---+.|. .|+..
T Consensus 34 ~aky~CpfCgk~~vKR~a~GIW~C~--kCg~~ 63 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKRAAVGIWKCK--PCKKI 63 (103)
T ss_dssp HSCEECTTTCCEEEEEEETTEEEET--TTTEE
T ss_pred hcCCCCCCCCCceeeecCcceEEcC--CCCCE
Confidence 3445799999988777666667887 68653
No 131
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.93 E-value=8.6 Score=29.14 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=24.1
Q ss_pred hccCCCCCCCCCCCeec-------------------------cCCccccccCCCCCCcccCCccc
Q 020612 183 HNVSRFCGHCGEKTIPK-------------------------EAGKLKQCSNASCKKRIYPRVDP 222 (323)
Q Consensus 183 ~~~~~fC~~CG~~~~~~-------------------------~~g~~~~C~~~~C~~~~ypr~~p 222 (323)
|...--||-||+++.-. -.+....|| .|+-..|-+.-|
T Consensus 5 ~~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP--~CgEEFyG~~Lp 67 (95)
T 2k5c_A 5 HHHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP--VCGEEFYGKTLP 67 (95)
T ss_dssp ---CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT--TTCCEEETTSSC
T ss_pred ccccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC--CccHHHhcccCC
Confidence 34456799999997531 113455787 899998876543
No 132
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=28.27 E-value=16 Score=25.90 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=16.4
Q ss_pred ccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612 184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ 216 (323)
.+.+.|+.||.=|- +..|| .||...
T Consensus 3 s~mr~C~~Cg~YTL------k~~CP--~CG~~t 27 (60)
T 2aus_D 3 FRIRKCPKCGRYTL------KETCP--VCGEKT 27 (60)
T ss_dssp -CCEECTTTCCEES------SSBCT--TTCSBC
T ss_pred ccceECCCCCCEEc------cccCc--CCCCcc
Confidence 35778999987654 45676 577643
No 133
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.22 E-value=27 Score=24.57 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=14.8
Q ss_pred HhhhccCCCCCCCCCCCeec
Q 020612 180 LEWHNVSRFCGHCGEKTIPK 199 (323)
Q Consensus 180 ~~W~~~~~fC~~CG~~~~~~ 199 (323)
..|.+.+..||.|.+++...
T Consensus 54 ~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 54 DKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp HHHHHHCSSCTTTCCCCCCC
T ss_pred HHHHHcCCcCcCcCCcCCCC
Confidence 44767778999998887543
No 134
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=27.52 E-value=32 Score=22.33 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHhhhccCCCCCCCCCCC
Q 020612 179 LLEWHNVSRFCGHCGEKT 196 (323)
Q Consensus 179 l~~W~~~~~fC~~CG~~~ 196 (323)
|..|.++...||.|.+++
T Consensus 36 i~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 36 VDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp HHHTTTTCCSCSSSCCCS
T ss_pred HHHHHHcCCcCcCCCCEe
Confidence 456878888899998765
No 135
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=26.54 E-value=19 Score=24.99 Aligned_cols=23 Identities=9% Similarity=-0.137 Sum_probs=17.1
Q ss_pred HHHHhhhccCCCCCCCCCCCeec
Q 020612 177 RALLEWHNVSRFCGHCGEKTIPK 199 (323)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~~~~ 199 (323)
.++..|-+++..||.+|.++...
T Consensus 29 ~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 29 SLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp HHHHHHHHHHSBCTTTCCBCCGG
T ss_pred HHHHHHHHhCCCCcCCcCCCChh
Confidence 35556777777799999998643
No 136
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.68 E-value=15 Score=28.39 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCee
Q 020612 186 SRFCGHCGEKTIP 198 (323)
Q Consensus 186 ~~fC~~CG~~~~~ 198 (323)
..-||.||+++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 6679999998764
No 137
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.39 E-value=30 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=14.8
Q ss_pred HHHhhhccCCCCCCCCCCCe
Q 020612 178 ALLEWHNVSRFCGHCGEKTI 197 (323)
Q Consensus 178 ~l~~W~~~~~fC~~CG~~~~ 197 (323)
=+..|...+..||.|..++.
T Consensus 48 Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 48 CLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp HHHHHHHHCSSCTTTCCCCC
T ss_pred HHHHHHHcCCCCCCCCCccC
Confidence 34557667889999998764
No 138
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=25.12 E-value=41 Score=28.66 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDR 231 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~ 231 (323)
+.-||.|.+++... .+....|. .|+...-|...-.+-+-|.|.
T Consensus 42 Y~ACp~CnKKV~~~-~~g~~~Ce--kC~~~~~~~~RYil~~~i~D~ 84 (172)
T 3u50_C 42 YYRCTCQGKSVLKY-HGDSFFCE--SCQQFINPQVHLMLRAFVQDS 84 (172)
T ss_dssp EEECTTSCCCEEEE-TTTEEEET--TTTEECCCEEEECEEEEEEET
T ss_pred ehhchhhCCEeeeC-CCCeEECC--CCCCCCCceEEEEEEEEEEeC
Confidence 55699999998743 34456897 798873333333344455554
No 139
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.76 E-value=29 Score=25.02 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=12.8
Q ss_pred cCCCCCCCCCCCeecc
Q 020612 185 VSRFCGHCGEKTIPKE 200 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~ 200 (323)
-.+|||.|...+...+
T Consensus 48 lkKycp~c~kHtlhkE 63 (66)
T 3bbo_3 48 LRKFCPYCYKHTIHGE 63 (66)
T ss_dssp CCCCCCSSSSCCCCCC
T ss_pred EEccCCCCCCeeeEEe
Confidence 4689999999887654
No 140
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=24.10 E-value=9.5 Score=29.94 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=11.2
Q ss_pred cCCCCCCCCCCCee
Q 020612 185 VSRFCGHCGEKTIP 198 (323)
Q Consensus 185 ~~~fC~~CG~~~~~ 198 (323)
++.||+.||+++..
T Consensus 66 ~r~FC~~CGs~l~~ 79 (118)
T 3fac_A 66 KHWFCRTCGIYTHH 79 (118)
T ss_dssp EEEEETTTCCEEEE
T ss_pred eeEECCCCCccccC
Confidence 45699999998754
No 141
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=22.93 E-value=33 Score=25.18 Aligned_cols=20 Identities=10% Similarity=-0.187 Sum_probs=14.3
Q ss_pred HHhhhccCCCCCCCCCCCee
Q 020612 179 LLEWHNVSRFCGHCGEKTIP 198 (323)
Q Consensus 179 l~~W~~~~~fC~~CG~~~~~ 198 (323)
|..|-..+..||.||.++..
T Consensus 41 I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 41 ILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp HHHHHHHCSBCTTTCCBCCG
T ss_pred HHHHHhcCCCCCCCcCCCCh
Confidence 33455557899999998764
No 142
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.93 E-value=29 Score=25.09 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=18.5
Q ss_pred HHHHhhhccCCCCCCCCCCCeec
Q 020612 177 RALLEWHNVSRFCGHCGEKTIPK 199 (323)
Q Consensus 177 ~~l~~W~~~~~fC~~CG~~~~~~ 199 (323)
.=|..|..++..||.|.++....
T Consensus 55 ~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 55 CCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp HHHHHHTTTCCBCTTTCCBCCEE
T ss_pred HHHHHHHHhCCCCCCcCCCcchh
Confidence 45677999999999999887654
No 143
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=22.80 E-value=27 Score=27.55 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=18.4
Q ss_pred hccCCCCCCCCCCCeeccCCccc-cccCCCCCCc
Q 020612 183 HNVSRFCGHCGEKTIPKEAGKLK-QCSNASCKKR 215 (323)
Q Consensus 183 ~~~~~fC~~CG~~~~~~~~g~~~-~C~~~~C~~~ 215 (323)
-...-.|..||...... .... .|| .|+..
T Consensus 70 ~p~~~~C~~CG~~~e~~--~~~~~~CP--~Cgs~ 99 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPN--ALDYGVCE--KCHSK 99 (119)
T ss_dssp ECCEEECSSSSCEECSC--CSTTCCCS--SSSSC
T ss_pred ccceEEcCCCCCEEeCC--CCCCCcCc--cccCC
Confidence 33455788888776542 3345 687 68765
No 144
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=22.26 E-value=28 Score=21.91 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=16.9
Q ss_pred CCCCCCCCCee---ccCCccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIP---KEAGKLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~---~~~g~~~~C~~~~C~~~~ 216 (323)
-|+.||+|-.. ....+-..|. .||...
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~--aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCM--ACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEE--TTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhh--cCCCcc
Confidence 48999998432 2334555776 688654
No 145
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.15 E-value=38 Score=23.79 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=14.2
Q ss_pred HhhhccCCCCCCCCCCCeec
Q 020612 180 LEWHNVSRFCGHCGEKTIPK 199 (323)
Q Consensus 180 ~~W~~~~~fC~~CG~~~~~~ 199 (323)
..|.+.+..||.|..++...
T Consensus 46 ~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 46 VPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp HHHHTTTCSCTTTCCCCCCS
T ss_pred HHHHHcCCcCcCcCCccCCc
Confidence 34666777899998887543
No 146
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.02 E-value=25 Score=24.77 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCeeccCCccccccCCCCCC
Q 020612 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
...|+.||...... +.|+ .||+
T Consensus 30 l~~c~~cGe~~~~H-----~vc~--~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKPPH-----TVCP--ECGY 51 (60)
T ss_dssp CEECTTTCCEECTT-----SCCT--TTCE
T ss_pred eeECCCCCCeecce-----EEcC--CCCc
Confidence 56799999976544 4576 6884
No 147
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=22.01 E-value=29 Score=28.31 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCe
Q 020612 186 SRFCGHCGEKTI 197 (323)
Q Consensus 186 ~~fC~~CG~~~~ 197 (323)
.-.|..||....
T Consensus 70 ~~~C~~CG~~~~ 81 (139)
T 3a43_A 70 VFKCRNCNYEWK 81 (139)
T ss_dssp EEEETTTCCEEE
T ss_pred cEECCCCCCEEe
Confidence 345666655543
No 148
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=21.79 E-value=25 Score=24.39 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCeecc
Q 020612 186 SRFCGHCGEKTIPKE 200 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~ 200 (323)
.+|||.|...+...+
T Consensus 38 kKycp~~~kHtlhkE 52 (55)
T 2zjr_1 38 KKYDPVAKKHVVFRE 52 (55)
T ss_pred EccCCCCCCEEeEEE
Confidence 579999998876554
No 149
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=21.67 E-value=43 Score=30.87 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=18.6
Q ss_pred CCCCCCCCCeeccC---C-ccccccCCCCCCcc
Q 020612 188 FCGHCGEKTIPKEA---G-KLKQCSNASCKKRI 216 (323)
Q Consensus 188 fC~~CG~~~~~~~~---g-~~~~C~~~~C~~~~ 216 (323)
-|++||.+.....- + ....|| .|...+
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp--~~~~~~ 283 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCP--HCQKHH 283 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECT--TTSCC-
T ss_pred CCCCCCCEEEEEEecCCCCCEEECC--Cccccc
Confidence 89999999886442 2 333786 787655
No 150
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=21.62 E-value=41 Score=25.61 Aligned_cols=21 Identities=10% Similarity=-0.167 Sum_probs=15.7
Q ss_pred HHHhhhccCCCCCCCCCCCee
Q 020612 178 ALLEWHNVSRFCGHCGEKTIP 198 (323)
Q Consensus 178 ~l~~W~~~~~fC~~CG~~~~~ 198 (323)
.|..|-..+..||.||.++..
T Consensus 55 ~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 55 IILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp HHHHHTTSCSBCSSSCCBCCT
T ss_pred HHHHHHHcCCCCCCCCCCCCh
Confidence 344566678899999998764
No 151
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=21.11 E-value=41 Score=25.47 Aligned_cols=21 Identities=0% Similarity=-0.262 Sum_probs=15.3
Q ss_pred HHHhhhccCCCCCCCCCCCee
Q 020612 178 ALLEWHNVSRFCGHCGEKTIP 198 (323)
Q Consensus 178 ~l~~W~~~~~fC~~CG~~~~~ 198 (323)
.|..|-..+..||.|+.++..
T Consensus 49 cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 49 TIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp HHHHHTTTSCBCTTTCSBCCT
T ss_pred HHHHHHHhCCCCCCCCCCCCh
Confidence 344466667899999998764
No 152
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=20.76 E-value=28 Score=23.81 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCeecc
Q 020612 186 SRFCGHCGEKTIPKE 200 (323)
Q Consensus 186 ~~fC~~CG~~~~~~~ 200 (323)
.+|||.|...+...+
T Consensus 36 kKycp~~~khtlhkE 50 (52)
T 2ftc_P 36 LHYDPVVKQRVLFVE 50 (52)
T ss_pred EccCCCCCceEeEEe
Confidence 579999998876543
No 153
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.15 E-value=55 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=19.0
Q ss_pred cCCCCCCCCCCCeeccCCccccccCCCCCC
Q 020612 185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKK 214 (323)
Q Consensus 185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~ 214 (323)
+|.-|.+||......+ +.+|. .||+
T Consensus 16 tH~lCrRCG~~syH~q---K~~Ca--~CGy 40 (62)
T 3j21_e 16 THIRCRRCGRVSYNVK---KGYCA--ACGF 40 (62)
T ss_dssp CCCBCSSSCSBCEETT---TTEET--TTCT
T ss_pred ceeeecccCcchhccc---ccccc--ccCC
Confidence 5899999999977653 45676 6776
Done!