BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020613
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPE 73
+G W+ EED+K+I + +G W+ + K R GK CR RW N+L P++++ +T E
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIA-KHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74 EEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
E+++I H V+GNRWA IA LPGRTDN +KN+WNS IK+K+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 63 PDIRRGRFTPEEEKLIISLHSVVGNR-WAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118
PD+ +G +T EE++ +I L G + W IA HL GR + + W++ + +++K
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKK 59
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPE 73
+G W+ EED+++I ++ +G WS++ K R GK CR RW N+L P++++ +T E
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 85
Query: 74 EEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
E+++I H +GNRWA IA LPGRTDN +KN+WNS +++K+
Sbjct: 86 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 48 RCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKN 106
R C+ RW L P++ +G +T EE++ +I G RW+ IA HL GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 YWNSWIKKKIRK 118
W++ + +++K
Sbjct: 68 RWHNHLNPEVKK 79
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 98.6 bits (244), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/103 (45%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPE 73
+G W+ EED+++I+ + +G WS V K R GK CR RW N+L P++++ +T E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWS-VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
E+++I H +GNRWA IA LPGRTDN IKN+WNS +++K+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 34.7 bits (78), Expect = 0.081, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 67 RGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118
+G +T EE++ +I L G RW+ IA HL GR + + W++ + +++K
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPE 73
+G W+ EED+++I+ + +G WS V K R GK CR RW N+L P++++ +T E
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWS-VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74 EEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
E+++I H +GNRWA IA LPGRTDN IKN+WNS +++K+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 17 WSPEEDEKLIRYITTHGYGCWSEV----PEKAGLQRCGKSCRLRWINYLRPDIRRGRFTP 72
W+ EEDEKL + + +G W + P + +Q C+ RW L P++ +G +T
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQ-----CQHRWQKVLNPELIKGPWTK 63
Query: 73 EEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118
EE++ +I L G RW+ IA HL GR + + W++ + +++K
Sbjct: 64 EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 97.8 bits (242), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/103 (45%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPE 73
+G W+ EED+++I+ + +G WS V K R GK CR RW N+L P++++ +T E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWS-VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
E+++I H +GNRWA IA LPGRTDN IKN+WNS +++K+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 34.3 bits (77), Expect = 0.090, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 64 DIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118
++ +G +T EE++ +I L G RW+ IA HL GR + + W++ + +++K
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPE 73
+G ++ ED+ + Y+ +G W + R K CR RW N+L P + + +TPE
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 74 EEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
E++ I + +G++W+ IA +PGRTDN IKN WNS I K+I
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 7 CNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIR 66
N + K+ ++PEEDE L R + HG W + R + CR RW NYL P I
Sbjct: 4 VNLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSIS 61
Query: 67 RGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYW 108
+T EE+ L++ G +WA IA PGRTD IKN W
Sbjct: 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 66 RRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
++ +FTPEE++++ + G+ W IA+ P R + ++ W +++ I
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI 60
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 61.6 bits (148), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 39/52 (75%)
Query: 65 IRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
+++ +T EE+++I H +GNRWA IA LPGRTDN IKN+WNS +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 61.2 bits (147), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 40/53 (75%)
Query: 64 DIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116
++++ +T EE++++ H +GNRWA IA LPGRTDN IKN+WNS +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 18 SPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKL 77
+ EED KL + + +G W + + + R + CR RW NY+ P +R ++PEE+ L
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 78 IISLHSVVGNRWAHIASHLPGRTDNEIKNYW 108
+ ++ G +W I+ L R+DN I+N W
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPD 64
+G W+ EED++LI+ + +G WS V K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWS-VIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 30.8 bits (68), Expect = 0.99, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 67 RGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNS 110
+G +T EE++ +I L G RW+ IA HL GR + + W++
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 41.2 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPD 64
+G W+ EED+++I+ + +G WS V K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWS-VIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 31.2 bits (69), Expect = 0.74, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 67 RGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNS 110
+G +T EE++ +I L G RW+ IA HL GR + + W++
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPD 64
+G W+ EED+++I + +G WS V K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWS-VIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 31.2 bits (69), Expect = 0.81, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 67 RGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNS 110
+G +T EE++ +I L G RW+ IA HL GR + + W++
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 17 WSPEEDEKLIRYITTHGYGCWSEV 40
W+ EEDEKL+ + +GYG W+++
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 17 WSPEEDEKLIRYITTHGYGCWSEV 40
W+ EEDEKL+ + +GYG W+++
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 16 LWSPEEDEKLIRYITTHGYGCWSEVPEKAGL--QRCGKSCRLRWINYLRPDIRRGRFT 71
+W EDE L + +G WS + A L ++ K C+ RW +L P I++ ++
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 69 RFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIR 117
++T EE++L + G RW I+ + RT ++K+Y + K K++
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 69 RFTPEEEKLIISLHSVVGNR-WAHIASHLPGRTDNEIKNYW 108
++T EE++ + +L G + W +ASH P RTD + + W
Sbjct: 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 68 GRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKN 106
G++TPEE + + L GN WA I + L GR+ + +K+
Sbjct: 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD 61
>pdb|1JJU|A Chain A, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|A Chain A, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 489
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPE 73
RGL E +E+ RYI W E P+ + Q CG+ C +Y R ++ R TPE
Sbjct: 67 RGLSLAETEER--RYILEREPVAWDEGPDTSMTQTCGR-CH----SYARVALQ--RRTPE 117
Query: 74 EEKLIISLH 82
+ K +++ H
Sbjct: 118 DWKHLVNFH 126
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 27.7 bits (60), Expect = 8.2, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 17 WSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCR 54
W +E+ LI T G G W+++ + G R + CR
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,849,907
Number of Sequences: 62578
Number of extensions: 392373
Number of successful extensions: 3812
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3754
Number of HSP's gapped (non-prelim): 65
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)