Query 020613
Match_columns 323
No_of_seqs 281 out of 1375
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.5E-34 5E-39 234.8 10.5 105 11-116 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.1E-34 7.3E-39 235.5 9.1 105 14-119 1-105 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 1.2E-33 4.1E-38 238.7 13.1 108 14-122 2-109 (131)
4 3osg_A MYB21; transcription-DN 100.0 1.4E-33 4.7E-38 237.1 10.3 106 8-115 5-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 1.5E-33 5.2E-38 236.8 9.5 109 7-116 20-128 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 2.9E-31 1E-35 230.1 9.4 108 8-116 52-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.3E-30 4.4E-35 226.1 7.3 107 11-118 3-110 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 1.5E-21 5E-26 163.7 6.9 78 40-118 1-79 (128)
9 2dim_A Cell division cycle 5-l 99.8 2.8E-22 9.5E-27 152.4 2.2 67 8-75 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 1.2E-18 4.1E-23 160.8 6.9 106 9-115 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1E-18 3.6E-23 134.9 5.1 58 54-112 10-67 (73)
12 2din_A Cell division cycle 5-l 99.7 7.3E-18 2.5E-22 126.5 6.5 61 60-121 2-62 (66)
13 2cu7_A KIAA1915 protein; nucle 99.7 3.1E-17 1E-21 125.3 8.4 58 61-118 3-60 (72)
14 2juh_A Telomere binding protei 99.7 3.1E-18 1E-22 144.0 2.6 83 8-91 11-103 (121)
15 2d9a_A B-MYB, MYB-related prot 99.7 1.4E-17 4.9E-22 122.6 3.7 57 9-66 3-59 (60)
16 1gvd_A MYB proto-oncogene prot 99.7 1.7E-17 6E-22 118.9 3.6 52 12-64 1-52 (52)
17 2d9a_A B-MYB, MYB-related prot 99.7 5.9E-17 2E-21 119.3 6.4 56 62-117 3-59 (60)
18 2roh_A RTBP1, telomere binding 99.7 2.7E-17 9.1E-22 138.4 4.6 79 9-88 26-114 (122)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 2.9E-17 9.9E-22 117.6 2.7 52 12-64 1-52 (52)
20 1ity_A TRF1; helix-turn-helix, 99.6 5E-17 1.7E-21 123.1 3.5 64 8-71 4-68 (69)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 2.2E-16 7.6E-21 113.0 6.4 50 65-114 1-51 (52)
22 2dim_A Cell division cycle 5-l 99.6 4.6E-16 1.6E-20 118.0 7.3 59 62-120 4-63 (70)
23 1gvd_A MYB proto-oncogene prot 99.6 4E-16 1.4E-20 111.8 6.3 50 65-114 1-51 (52)
24 1ity_A TRF1; helix-turn-helix, 99.6 8.5E-16 2.9E-20 116.3 8.2 61 60-120 3-66 (69)
25 1w0t_A Telomeric repeat bindin 99.6 1.2E-15 4E-20 109.9 6.6 50 66-115 1-53 (53)
26 3sjm_A Telomeric repeat-bindin 99.6 2.2E-16 7.5E-21 118.7 2.4 56 11-66 8-64 (64)
27 2yum_A ZZZ3 protein, zinc fing 99.6 1.8E-15 6.3E-20 116.0 6.8 59 62-120 3-67 (75)
28 1x41_A Transcriptional adaptor 99.6 1.6E-15 5.5E-20 112.0 6.1 53 62-114 3-56 (60)
29 1x41_A Transcriptional adaptor 99.6 6.1E-16 2.1E-20 114.3 3.2 56 9-65 3-58 (60)
30 3sjm_A Telomeric repeat-bindin 99.6 5.8E-15 2E-19 110.9 6.9 52 65-116 9-63 (64)
31 1w0t_A Telomeric repeat bindin 99.5 2.1E-15 7.3E-20 108.6 2.4 50 13-62 1-51 (53)
32 2din_A Cell division cycle 5-l 99.5 8.1E-16 2.8E-20 115.4 -0.1 58 8-68 3-60 (66)
33 2elk_A SPCC24B10.08C protein; 99.5 1.7E-14 5.8E-19 106.0 6.4 50 63-112 5-56 (58)
34 2yum_A ZZZ3 protein, zinc fing 99.5 1.9E-15 6.6E-20 115.8 1.1 60 9-69 3-67 (75)
35 2elk_A SPCC24B10.08C protein; 99.5 4.4E-15 1.5E-19 109.2 2.9 51 11-61 6-56 (58)
36 2ltp_A Nuclear receptor corepr 99.2 1.6E-15 5.6E-20 120.6 0.0 57 59-115 8-64 (89)
37 2cu7_A KIAA1915 protein; nucle 99.5 8.7E-15 3E-19 111.7 1.4 58 8-67 3-60 (72)
38 3osg_A MYB21; transcription-DN 99.4 2.2E-13 7.4E-18 114.0 7.5 57 62-118 6-62 (126)
39 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.7E-13 6E-18 105.6 6.0 52 63-114 14-69 (73)
40 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.3E-13 7.8E-18 109.9 6.9 55 64-118 1-56 (105)
41 2aje_A Telomere repeat-binding 99.4 1.3E-13 4.5E-18 113.2 4.3 80 7-86 6-94 (105)
42 2ckx_A NGTRF1, telomere bindin 99.4 2.4E-13 8.1E-18 107.3 4.6 69 15-84 1-79 (83)
43 2yus_A SWI/SNF-related matrix- 99.4 4.9E-13 1.7E-17 104.4 5.5 48 64-111 15-62 (79)
44 2k9n_A MYB24; R2R3 domain, DNA 99.3 1.1E-12 3.8E-17 106.6 6.5 52 67-118 1-53 (107)
45 2llk_A Cyclin-D-binding MYB-li 99.3 3.3E-13 1.1E-17 104.1 3.1 61 4-68 13-73 (73)
46 3zqc_A MYB3; transcription-DNA 99.3 2.7E-13 9.2E-18 114.0 2.8 83 8-96 48-130 (131)
47 1x58_A Hypothetical protein 49 99.3 2.5E-12 8.4E-17 96.3 6.6 50 66-115 7-59 (62)
48 2yus_A SWI/SNF-related matrix- 99.3 9.4E-13 3.2E-17 102.8 3.9 52 7-60 11-62 (79)
49 2aje_A Telomere repeat-binding 99.3 6.5E-12 2.2E-16 103.1 8.9 56 62-117 8-68 (105)
50 2ckx_A NGTRF1, telomere bindin 99.3 4.1E-12 1.4E-16 100.2 7.0 49 68-116 1-54 (83)
51 2juh_A Telomere binding protei 99.3 4.4E-12 1.5E-16 106.5 7.1 56 61-116 11-71 (121)
52 1ign_A Protein (RAP1); RAP1,ye 99.3 3.4E-12 1.2E-16 118.0 5.5 55 63-117 4-64 (246)
53 2ltp_A Nuclear receptor corepr 98.9 7.6E-13 2.6E-17 105.2 0.0 57 5-63 7-63 (89)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1.7E-12 5.9E-17 100.0 1.5 55 7-62 11-68 (73)
55 2cjj_A Radialis; plant develop 99.2 1.4E-11 5E-16 99.0 5.9 50 66-115 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.2 3E-11 1E-15 101.5 8.1 56 62-117 26-86 (122)
57 2eqr_A N-COR1, N-COR, nuclear 99.0 3.4E-10 1.2E-14 83.8 6.2 48 66-113 11-58 (61)
58 3hm5_A DNA methyltransferase 1 99.0 4.2E-10 1.4E-14 90.5 5.5 65 51-119 18-87 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.8E-09 6E-14 82.9 7.1 52 64-116 5-60 (72)
60 2cjj_A Radialis; plant develop 98.9 2.1E-10 7.2E-15 92.2 1.2 48 13-61 7-57 (93)
61 2iw5_B Protein corest, REST co 98.8 8.5E-09 2.9E-13 94.6 6.3 49 66-114 132-180 (235)
62 1x58_A Hypothetical protein 49 98.7 4.4E-09 1.5E-13 78.7 2.6 49 12-62 6-57 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.7 6.5E-09 2.2E-13 76.9 3.3 53 7-61 5-57 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.7 3.3E-08 1.1E-12 76.2 6.2 49 67-115 8-60 (73)
65 2xag_B REST corepressor 1; ami 98.5 6E-08 2.1E-12 97.5 5.2 47 68-114 381-427 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.5 3.2E-08 1.1E-12 75.9 1.1 52 10-63 4-58 (72)
67 1fex_A TRF2-interacting telome 98.4 2.1E-07 7.2E-12 68.7 5.2 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.4 7.7E-08 2.6E-12 71.0 1.5 48 14-62 2-58 (59)
69 2yqk_A Arginine-glutamic acid 98.3 1.9E-06 6.6E-11 64.0 7.4 52 62-113 4-56 (63)
70 1wgx_A KIAA1903 protein; MYB D 98.2 2.8E-07 9.5E-12 71.0 1.7 49 14-63 8-59 (73)
71 2iw5_B Protein corest, REST co 98.2 5.6E-07 1.9E-11 82.6 2.7 51 10-62 129-179 (235)
72 1ug2_A 2610100B20RIK gene prod 98.1 2.9E-06 9.9E-11 67.8 5.3 48 69-116 35-85 (95)
73 1ofc_X ISWI protein; nuclear p 98.1 5.7E-06 1.9E-10 79.0 8.0 99 15-114 111-275 (304)
74 4eef_G F-HB80.4, designed hema 98.0 9.4E-07 3.2E-11 68.1 1.0 43 67-109 20-66 (74)
75 2lr8_A CAsp8-associated protei 97.2 9.5E-07 3.3E-11 67.1 0.0 45 69-114 16-63 (70)
76 4iej_A DNA methyltransferase 1 97.9 1.2E-05 4.1E-10 64.5 5.6 60 55-118 22-86 (93)
77 2crg_A Metastasis associated p 97.8 4.7E-05 1.6E-09 57.7 6.4 46 67-112 8-54 (70)
78 4eef_G F-HB80.4, designed hema 97.8 5.5E-06 1.9E-10 63.8 1.0 44 14-58 20-66 (74)
79 4a69_C Nuclear receptor corepr 97.8 4.2E-05 1.4E-09 61.2 6.1 46 67-112 43-88 (94)
80 2yqk_A Arginine-glutamic acid 97.5 7.1E-05 2.4E-09 55.5 3.2 49 9-59 4-53 (63)
81 2xag_B REST corepressor 1; ami 97.2 0.00014 4.7E-09 73.3 2.8 47 12-60 378-424 (482)
82 2ebi_A DNA binding protein GT- 97.2 0.00044 1.5E-08 53.6 5.0 48 67-114 4-65 (86)
83 3hm5_A DNA methyltransferase 1 97.1 0.00017 5.9E-09 57.8 2.0 49 12-61 28-80 (93)
84 2ebi_A DNA binding protein GT- 97.0 8.5E-05 2.9E-09 57.7 -0.9 51 11-61 1-63 (86)
85 2y9y_A Imitation switch protei 96.9 0.0023 7.9E-08 62.6 8.7 100 15-115 124-292 (374)
86 4a69_C Nuclear receptor corepr 96.8 0.00055 1.9E-08 54.7 2.4 44 14-59 43-86 (94)
87 4b4c_A Chromodomain-helicase-D 96.7 0.004 1.4E-07 55.1 8.1 103 10-113 3-195 (211)
88 2crg_A Metastasis associated p 96.7 0.00075 2.6E-08 51.0 2.3 45 13-59 7-52 (70)
89 1ug2_A 2610100B20RIK gene prod 96.3 0.0018 6.1E-08 51.8 2.6 45 16-61 35-81 (95)
90 2lr8_A CAsp8-associated protei 95.0 0.001 3.5E-08 50.5 0.0 46 15-62 15-62 (70)
91 1irz_A ARR10-B; helix-turn-hel 94.5 0.1 3.4E-06 39.0 6.5 48 65-112 5-57 (64)
92 4iej_A DNA methyltransferase 1 93.2 0.036 1.2E-06 44.3 2.1 49 12-61 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 92.8 0.17 5.9E-06 48.1 6.5 48 67-114 110-158 (304)
94 4b4c_A Chromodomain-helicase-D 91.3 0.23 8E-06 43.6 5.2 50 65-114 5-59 (211)
95 2xb0_X Chromo domain-containin 89.7 0.16 5.4E-06 47.6 2.7 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 84.9 0.5 1.7E-05 35.2 2.5 51 10-60 3-56 (64)
97 2xb0_X Chromo domain-containin 78.8 3.9 0.00013 38.2 6.6 47 67-113 3-54 (270)
98 2o8x_A Probable RNA polymerase 63.7 10 0.00035 26.3 4.6 43 70-114 16-58 (70)
99 2eqy_A RBP2 like, jumonji, at 59.0 30 0.001 28.0 7.2 38 77-114 46-95 (122)
100 2li6_A SWI/SNF chromatin-remod 58.6 7.1 0.00024 31.5 3.3 38 77-114 53-98 (116)
101 1ku3_A Sigma factor SIGA; heli 57.7 15 0.00051 26.2 4.6 42 73-115 13-58 (73)
102 2lm1_A Lysine-specific demethy 55.6 16 0.00056 28.6 4.9 38 77-114 48-97 (107)
103 2rq5_A Protein jumonji; develo 53.6 3.8 0.00013 33.8 0.8 45 36-83 65-113 (121)
104 2p7v_B Sigma-70, RNA polymeras 53.4 15 0.00052 25.7 4.0 41 74-115 9-53 (68)
105 2jrz_A Histone demethylase jar 53.3 15 0.00052 29.6 4.4 38 77-114 44-93 (117)
106 1u78_A TC3 transposase, transp 51.2 78 0.0027 24.4 8.4 88 15-108 5-100 (141)
107 2cxy_A BAF250B subunit, HBAF25 49.6 20 0.00069 29.1 4.7 38 77-114 55-104 (125)
108 2y9y_A Imitation switch protei 49.1 30 0.001 33.7 6.5 47 68-115 124-172 (374)
109 3cz6_A DNA-binding protein RAP 47.9 8.8 0.0003 33.5 2.3 28 11-41 111-146 (168)
110 3hug_A RNA polymerase sigma fa 46.4 26 0.00089 26.0 4.6 41 73-114 40-80 (92)
111 1kkx_A Transcription regulator 45.8 9.7 0.00033 31.2 2.1 38 78-115 53-98 (123)
112 1c20_A DEAD ringer protein; DN 42.8 30 0.001 28.1 4.7 38 77-114 56-106 (128)
113 2rq5_A Protein jumonji; develo 42.5 24 0.00082 28.9 4.0 76 13-114 6-96 (121)
114 1x3u_A Transcriptional regulat 41.2 48 0.0016 23.3 5.1 42 70-114 17-58 (79)
115 2kk0_A AT-rich interactive dom 40.7 32 0.0011 28.7 4.6 38 77-114 68-118 (145)
116 2jxj_A Histone demethylase jar 39.0 14 0.00047 28.5 2.0 37 78-114 41-89 (96)
117 2li6_A SWI/SNF chromatin-remod 38.8 6.4 0.00022 31.8 -0.0 39 24-63 53-98 (116)
118 2yqf_A Ankyrin-1; death domain 38.8 40 0.0014 26.5 4.8 35 71-106 14-48 (111)
119 1or7_A Sigma-24, RNA polymeras 38.3 38 0.0013 27.6 4.7 29 85-114 155-183 (194)
120 1tty_A Sigma-A, RNA polymerase 37.6 35 0.0012 25.2 4.0 40 74-114 22-65 (87)
121 3i4p_A Transcriptional regulat 37.1 37 0.0013 28.0 4.5 46 73-119 3-49 (162)
122 1ig6_A MRF-2, modulator recogn 37.1 20 0.0007 28.2 2.7 38 77-114 37-87 (107)
123 3ulq_B Transcriptional regulat 35.3 63 0.0021 24.3 5.2 46 66-114 26-71 (90)
124 3c57_A Two component transcrip 35.0 52 0.0018 24.7 4.7 44 69-115 27-70 (95)
125 2q1z_A RPOE, ECF SIGE; ECF sig 34.8 26 0.00089 28.5 3.1 29 85-114 150-178 (184)
126 2of5_H Leucine-rich repeat and 34.3 37 0.0013 27.2 3.9 31 75-106 13-43 (118)
127 1je8_A Nitrate/nitrite respons 34.2 52 0.0018 24.1 4.4 43 69-114 21-63 (82)
128 1fse_A GERE; helix-turn-helix 34.0 56 0.0019 22.5 4.4 44 68-114 10-53 (74)
129 2o71_A Death domain-containing 33.5 42 0.0014 27.0 4.1 29 77-106 26-54 (115)
130 2of5_A Death domain-containing 33.3 40 0.0014 27.1 3.9 38 65-106 17-54 (114)
131 3cz6_A DNA-binding protein RAP 33.0 34 0.0012 29.8 3.6 17 63-79 110-126 (168)
132 2vty_A Protein F1, F1L; BCL-2, 32.5 8.8 0.0003 32.5 -0.2 18 229-246 20-37 (182)
133 1c20_A DEAD ringer protein; DN 30.5 10 0.00034 31.0 -0.1 40 24-63 56-106 (128)
134 2jpc_A SSRB; DNA binding prote 30.5 72 0.0025 21.3 4.4 38 75-114 3-40 (61)
135 1xsv_A Hypothetical UPF0122 pr 30.1 67 0.0023 25.2 4.7 40 74-114 29-68 (113)
136 3mzy_A RNA polymerase sigma-H 29.1 51 0.0017 25.7 3.9 30 84-114 122-151 (164)
137 1rp3_A RNA polymerase sigma fa 28.5 64 0.0022 27.0 4.7 36 78-114 195-230 (239)
138 1wxp_A THO complex subunit 1; 28.4 63 0.0022 25.4 4.3 31 75-106 18-48 (110)
139 2dbb_A Putative HTH-type trans 26.6 1.1E+02 0.0037 24.5 5.5 44 73-117 9-53 (151)
140 1ntc_A Protein (nitrogen regul 26.0 99 0.0034 23.1 4.9 36 72-108 50-85 (91)
141 2rnj_A Response regulator prot 25.7 65 0.0022 23.8 3.7 43 69-114 29-71 (91)
142 2e1c_A Putative HTH-type trans 25.2 99 0.0034 25.8 5.2 45 73-118 27-72 (171)
143 3e7l_A Transcriptional regulat 25.1 88 0.003 21.8 4.1 34 73-107 19-52 (63)
144 1k78_A Paired box protein PAX5 24.9 1.9E+02 0.0067 22.7 6.8 78 14-96 30-118 (149)
145 2p1m_A SKP1-like protein 1A; F 24.4 32 0.0011 28.9 1.9 35 38-80 119-153 (160)
146 2kk0_A AT-rich interactive dom 24.1 32 0.0011 28.7 1.9 53 24-76 68-133 (145)
147 4fx5_A VON willebrand factor t 23.3 25 0.00085 34.6 1.1 23 217-241 21-43 (464)
148 1p4w_A RCSB; solution structur 22.8 1.4E+02 0.0046 23.0 5.2 45 67-114 32-76 (99)
149 2lfw_A PHYR sigma-like domain; 22.2 73 0.0025 25.7 3.7 41 73-114 96-136 (157)
150 1tc3_C Protein (TC3 transposas 21.7 1.4E+02 0.0049 18.0 5.1 38 69-108 5-42 (51)
151 2cyy_A Putative HTH-type trans 21.1 1.4E+02 0.0048 23.8 5.2 46 73-119 7-53 (151)
152 3i4p_A Transcriptional regulat 21.0 22 0.00074 29.5 0.1 43 20-64 3-45 (162)
153 1s7o_A Hypothetical UPF0122 pr 20.0 1.2E+02 0.0039 23.9 4.3 43 70-114 23-65 (113)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.5e-34 Score=234.84 Aligned_cols=105 Identities=43% Similarity=0.863 Sum_probs=99.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChH
Q 020613 11 KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWA 90 (323)
Q Consensus 11 kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs 90 (323)
.+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 37899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHhhhhc
Q 020613 91 HIASHLPGRTDNEIKNYWNSWIKKKI 116 (323)
Q Consensus 91 kIAk~LpgRT~~qcKnRW~~lLkkk~ 116 (323)
.||+.|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998864
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.1e-34 Score=235.54 Aligned_cols=105 Identities=29% Similarity=0.577 Sum_probs=101.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHh
Q 020613 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIA 93 (323)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIA 93 (323)
||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|++++|+||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhhccCC
Q 020613 94 SHLPGRTDNEIKNYWNSWIKKKIRKP 119 (323)
Q Consensus 94 k~LpgRT~~qcKnRW~~lLkkk~kK~ 119 (323)
+.|||||+++||+||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999999876654
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.2e-33 Score=238.65 Aligned_cols=108 Identities=37% Similarity=0.689 Sum_probs=103.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHh
Q 020613 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIA 93 (323)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIA 93 (323)
||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhhccCCCCC
Q 020613 94 SHLPGRTDNEIKNYWNSWIKKKIRKPSTV 122 (323)
Q Consensus 94 k~LpgRT~~qcKnRW~~lLkkk~kK~~~~ 122 (323)
+.|||||+++|++||++++++++.+....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999988765543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=1.4e-33 Score=237.06 Aligned_cols=106 Identities=39% Similarity=0.682 Sum_probs=101.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020613 8 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGN 87 (323)
Q Consensus 8 ~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~ 87 (323)
+++..++|+||+|||++|+++|.+||. +|..||..|+ +|+++|||+||.++|+|.+++|+||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999997 8999999998 99999999999999999999999999999999999999999
Q ss_pred ChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 88 RWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 88 kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
+|+.||+.|||||+++||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998774
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.5e-33 Score=236.75 Aligned_cols=109 Identities=40% Similarity=0.830 Sum_probs=102.7
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 020613 7 CNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG 86 (323)
Q Consensus 7 ~~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G 86 (323)
...|.+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 346789999999999999999999999889999999999 9999999999999999999999999999999999999999
Q ss_pred CChHHHhccCCCCCHHHHHHHHHHHhhhhc
Q 020613 87 NRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116 (323)
Q Consensus 87 ~kWskIAk~LpgRT~~qcKnRW~~lLkkk~ 116 (323)
++|+.||+.|||||+++|++||+.++++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998763
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.9e-31 Score=230.09 Aligned_cols=108 Identities=42% Similarity=0.832 Sum_probs=102.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020613 8 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGN 87 (323)
Q Consensus 8 ~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~ 87 (323)
..|.+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 45788999999999999999999999888999999998 99999999999999999999999999999999999999999
Q ss_pred ChHHHhccCCCCCHHHHHHHHHHHhhhhc
Q 020613 88 RWAHIASHLPGRTDNEIKNYWNSWIKKKI 116 (323)
Q Consensus 88 kWskIAk~LpgRT~~qcKnRW~~lLkkk~ 116 (323)
+|+.||+.|||||+++||+||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=1.3e-30 Score=226.06 Aligned_cols=107 Identities=30% Similarity=0.669 Sum_probs=63.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 020613 11 KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGN-RW 89 (323)
Q Consensus 11 kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~-kW 89 (323)
.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 37899999999999999999999989999999998 99999999999999999999999999999999999999996 69
Q ss_pred HHHhccCCCCCHHHHHHHHHHHhhhhccC
Q 020613 90 AHIASHLPGRTDNEIKNYWNSWIKKKIRK 118 (323)
Q Consensus 90 skIAk~LpgRT~~qcKnRW~~lLkkk~kK 118 (323)
..||+.|||||+.||++||.++|++.+++
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 110 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKK 110 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccc
Confidence 99999999999999999999999876543
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.84 E-value=1.5e-21 Score=163.69 Aligned_cols=78 Identities=28% Similarity=0.663 Sum_probs=53.7
Q ss_pred cccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhhccC
Q 020613 40 VPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGN-RWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118 (323)
Q Consensus 40 IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~-kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK 118 (323)
||+.|+ +|+++||++||.++|+|++++|+||+|||++|+++|.+||. +|..||+.|+|||+.||++||.++|++.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999996 6999999999999999999999999876553
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-22 Score=152.38 Aligned_cols=67 Identities=25% Similarity=0.579 Sum_probs=64.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHH
Q 020613 8 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEE 75 (323)
Q Consensus 8 ~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED 75 (323)
..+.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45789999999999999999999999889999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.74 E-value=1.2e-18 Score=160.85 Aligned_cols=106 Identities=17% Similarity=0.323 Sum_probs=92.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCcCcCcccccchhhhccCCCCC-----------------
Q 020613 9 QQKVKRGLWSPEEDEKLIRYITTHGYGC-----WSEVPEKAGLQRCGKSCRLRWINYLRPDIR----------------- 66 (323)
Q Consensus 9 ~~kvkKG~WT~EEDe~L~~lV~kyG~~n-----W~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ik----------------- 66 (323)
.+.++|++||+|||++|+++|+++|..+ |.+||..|+ |||+.|||.||.++|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678999999999999999999998653 999999999 99999999999999999987
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 020613 67 ------------RGRFTPEEEKLIISLHSV-V------------------------------------------------ 85 (323)
Q Consensus 67 ------------kg~WT~EED~~Ll~lv~~-~------------------------------------------------ 85 (323)
+..||.+||-.|+..+++ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 889999999999999877 2
Q ss_pred -----C----CChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 86 -----G----NRWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 86 -----G----~kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
| ..|..||+.+|+||.+++|+||...++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 15999999999999999999999998764
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=134.91 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=47.4
Q ss_pred cchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHh
Q 020613 54 RLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWI 112 (323)
Q Consensus 54 R~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lL 112 (323)
--||.++|+|++++++||+|||++|+++|.+||++|++||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999999654
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.3e-18 Score=126.54 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=58.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhhccCCCC
Q 020613 60 YLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPST 121 (323)
Q Consensus 60 ~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK~~~ 121 (323)
+|+|.+++++||+|||++|+++|++||++|.+||+ |+|||++|||+||+.++++.+++...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999887654
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.70 E-value=3.1e-17 Score=125.34 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=55.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhhccC
Q 020613 61 LRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118 (323)
Q Consensus 61 L~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK 118 (323)
++|.+++++||+|||++|+++|.+||++|..||++|+|||++|||+||+.++++++++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998876
No 14
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.70 E-value=3.1e-18 Score=143.96 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=78.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----CcCcCcccccchhhhccC-----CCCCCC-CCCHHHHHH
Q 020613 8 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKA----GLQRCGKSCRLRWINYLR-----PDIRRG-RFTPEEEKL 77 (323)
Q Consensus 8 ~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l----~~~Rt~kQCR~Rw~n~L~-----p~ikkg-~WT~EED~~ 77 (323)
..++.++++||+|||+.|+++|++||.++|..|+..+ + +||+.+|++||.++++ |.+++| +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3567899999999999999999999998999999985 5 8999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCChHH
Q 020613 78 IISLHSVVGNRWAH 91 (323)
Q Consensus 78 Ll~lv~~~G~kWsk 91 (323)
|+.++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.4e-17 Score=122.62 Aligned_cols=57 Identities=23% Similarity=0.469 Sum_probs=54.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCC
Q 020613 9 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIR 66 (323)
Q Consensus 9 ~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ik 66 (323)
.+.+++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4678999999999999999999999888999999999 99999999999999999875
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.67 E-value=1.7e-17 Score=118.88 Aligned_cols=52 Identities=38% Similarity=0.809 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCC
Q 020613 12 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPD 64 (323)
Q Consensus 12 vkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ 64 (323)
+++|+||+|||++|+++|.+||.++|..||..|+ +|+++|||+||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999888999999998 999999999999999984
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=5.9e-17 Score=119.33 Aligned_cols=56 Identities=25% Similarity=0.463 Sum_probs=52.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhhcc
Q 020613 62 RPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKKIR 117 (323)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G-~kWskIAk~LpgRT~~qcKnRW~~lLkkk~k 117 (323)
+|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 6999999999999999999999999988654
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.67 E-value=2.7e-17 Score=138.42 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=73.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----CcCcCcccccchhhhcc-----CCCCCCCCCCHHH-HHHH
Q 020613 9 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKA----GLQRCGKSCRLRWINYL-----RPDIRRGRFTPEE-EKLI 78 (323)
Q Consensus 9 ~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l----~~~Rt~kQCR~Rw~n~L-----~p~ikkg~WT~EE-D~~L 78 (323)
.++.++++||+|||+.|+++|++||.++|..|+..+ + +||+.+|++||.|++ +|.+++|.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 346789999999999999999999999999999864 5 899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 020613 79 ISLHSVVGNR 88 (323)
Q Consensus 79 l~lv~~~G~k 88 (323)
+.++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=2.9e-17 Score=117.60 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCC
Q 020613 12 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPD 64 (323)
Q Consensus 12 vkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ 64 (323)
+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999999 999999999999999985
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=5e-17 Score=123.08 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=59.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCc-CcCcccccchhhhccCCCCCCCCCC
Q 020613 8 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGL-QRCGKSCRLRWINYLRPDIRRGRFT 71 (323)
Q Consensus 8 ~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~-~Rt~kQCR~Rw~n~L~p~ikkg~WT 71 (323)
.+++.++++||+|||++|+++|.+||.++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 356789999999999999999999998899999999976 8999999999999999999988764
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=2.2e-16 Score=112.98 Aligned_cols=50 Identities=30% Similarity=0.560 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 65 IRRGRFTPEEEKLIISLHSVVGN-RWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G~-kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 899999999999999999999999975
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.6e-16 Score=117.97 Aligned_cols=59 Identities=24% Similarity=0.520 Sum_probs=55.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhhccCCC
Q 020613 62 RPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPS 120 (323)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G-~kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK~~ 120 (323)
.|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.+++..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~ 63 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTE 63 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCC
Confidence 4678999999999999999999999 7999999999999999999999999999887643
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=4e-16 Score=111.78 Aligned_cols=50 Identities=32% Similarity=0.680 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 65 IRRGRFTPEEEKLIISLHSVVGN-RWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G~-kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999999875
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=8.5e-16 Score=116.29 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=56.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHHhhhhccCCC
Q 020613 60 YLRPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLP--GRTDNEIKNYWNSWIKKKIRKPS 120 (323)
Q Consensus 60 ~L~p~ikkg~WT~EED~~Ll~lv~~~G-~kWskIAk~Lp--gRT~~qcKnRW~~lLkkk~kK~~ 120 (323)
..++..++++||+|||++|+++|.+|| ++|+.||+.|+ |||+.|||+||+++|++.+.|..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 346778899999999999999999999 69999999999 99999999999999999987643
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=1.2e-15 Score=109.94 Aligned_cols=50 Identities=30% Similarity=0.422 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHHhhhh
Q 020613 66 RRGRFTPEEEKLIISLHSVVG-NRWAHIASHLP--GRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G-~kWskIAk~Lp--gRT~~qcKnRW~~lLkkk 115 (323)
++++||+|||++|+++|.+|| ++|+.||+.|+ |||+.||++||.++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 578999999999999999999 69999999999 999999999999998753
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=2.2e-16 Score=118.71 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=49.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccC-cCcCcccccchhhhccCCCCC
Q 020613 11 KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG-LQRCGKSCRLRWINYLRPDIR 66 (323)
Q Consensus 11 kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~-~~Rt~kQCR~Rw~n~L~p~ik 66 (323)
..+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||.++++|+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999989999999854 389999999999999998875
No 27
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=115.96 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChHHHhccCCCCCHHHHHHHHHHHhhhhccCCC
Q 020613 62 RPDIRRGRFTPEEEKLIISLHSVVG------NRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPS 120 (323)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G------~kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK~~ 120 (323)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||+++|++.+++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 7899999999999999999999999988776543
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.6e-15 Score=112.03 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=49.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 62 RPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G-~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.+.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||.+++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3678999999999999999999999 7999999999999999999999998864
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=6.1e-16 Score=114.29 Aligned_cols=56 Identities=16% Similarity=0.500 Sum_probs=52.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCC
Q 020613 9 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDI 65 (323)
Q Consensus 9 ~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~i 65 (323)
.+.+++++||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 3578999999999999999999999888999999999 9999999999999998653
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=5.8e-15 Score=110.94 Aligned_cols=52 Identities=25% Similarity=0.479 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHHhhhhc
Q 020613 65 IRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLP--GRTDNEIKNYWNSWIKKKI 116 (323)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G-~kWskIAk~Lp--gRT~~qcKnRW~~lLkkk~ 116 (323)
.++++||+|||++|+++|.+|| .+|+.||+.++ |||+.|||+||+++++..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999998765
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=2.1e-15 Score=108.56 Aligned_cols=50 Identities=28% Similarity=0.436 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccCc-CcCcccccchhhhccC
Q 020613 13 KRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGL-QRCGKSCRLRWINYLR 62 (323)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~-~Rt~kQCR~Rw~n~L~ 62 (323)
++|+||+|||++|+++|.+||.++|..||..++. +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 6899999999999999999998899999999976 6999999999999875
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.1e-16 Score=115.36 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=53.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCC
Q 020613 8 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRG 68 (323)
Q Consensus 8 ~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg 68 (323)
..|.+++++||+|||++|+++|+.||. +|..||+ ++ +|+++||++||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 468899999999999999999999996 7999999 77 7999999999999999877665
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1.7e-14 Score=106.03 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=46.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC-CCCHHHHHHHHHHHh
Q 020613 63 PDIRRGRFTPEEEKLIISLHSVVG-NRWAHIASHLP-GRTDNEIKNYWNSWI 112 (323)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G-~kWskIAk~Lp-gRT~~qcKnRW~~lL 112 (323)
..+.+++||+|||++|+++|.+|| ++|.+||++|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346788999999999999999999 89999999999 999999999999864
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-15 Score=115.84 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=55.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccccccccCcCcCcccccchhhhccCCCCCCCC
Q 020613 9 QQKVKRGLWSPEEDEKLIRYITTHGY-----GCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGR 69 (323)
Q Consensus 9 ~~kvkKG~WT~EEDe~L~~lV~kyG~-----~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~ 69 (323)
++.+++++||+|||++|+++|.+||. .+|..||+.|+ +||..||+.||.+||.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999996 67999999999 99999999999999998877764
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=4.4e-15 Score=109.18 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=47.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhcc
Q 020613 11 KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 (323)
Q Consensus 11 kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L 61 (323)
.+.+++||+|||++|+++|++||.++|..||+.|+.+|+++|||+||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998899999999987899999999999875
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-15 Score=120.60 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=53.6
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 59 NYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 59 n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
..+.|.+++|+||+|||++|+++|.+||++|..||+.|+|||++|||+||++++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356789999999999999999999999999999999999999999999999998874
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=8.7e-15 Score=111.69 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=53.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCC
Q 020613 8 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRR 67 (323)
Q Consensus 8 ~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikk 67 (323)
..|.+++|+||+|||++|+++|.+||. +|..||..|+ +|++.||+.||.++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999996 7999999999 999999999999999876665
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.42 E-value=2.2e-13 Score=113.99 Aligned_cols=57 Identities=23% Similarity=0.592 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhhccC
Q 020613 62 RPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118 (323)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK 118 (323)
.+..++|+||+|||++|+++|.+||.+|..||+.|+|||+.||+.||.++|.+.+++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~ 62 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH 62 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc
Confidence 456889999999999999999999999999999999999999999999999877665
No 39
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.42 E-value=1.7e-13 Score=105.61 Aligned_cols=52 Identities=13% Similarity=0.265 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 63 PDIRRGRFTPEEEKLIISLHSVVG----NRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G----~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
+.+.+++||.|||++|++++.+|| ++|.+||+.|||||.+||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 467889999999999999999999 6899999999999999999999998754
No 40
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.42 E-value=2.3e-13 Score=109.89 Aligned_cols=55 Identities=31% Similarity=0.698 Sum_probs=50.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhhccC
Q 020613 64 DIRRGRFTPEEEKLIISLHSVVGN-RWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118 (323)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G~-kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK 118 (323)
++++|+||+|||++|+++|.+||. +|..||+.|+|||+.||+.||.++|.+.+++
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 56 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccc
Confidence 468999999999999999999997 6999999999999999999999998776543
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.40 E-value=1.3e-13 Score=113.21 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=67.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccC---cCcCcccccchhhhcc-----CCCCCCCCCCHHHHHH-
Q 020613 7 CNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG---LQRCGKSCRLRWINYL-----RPDIRRGRFTPEEEKL- 77 (323)
Q Consensus 7 ~~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~---~~Rt~kQCR~Rw~n~L-----~p~ikkg~WT~EED~~- 77 (323)
...++.++++||+|||++|+++|++||.++|..|+..+. .+||..+|++||.+++ +|.+++|.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 345688999999999999999999999989999999762 3899999999999998 6999999888877655
Q ss_pred HHHHHHHhC
Q 020613 78 IISLHSVVG 86 (323)
Q Consensus 78 Ll~lv~~~G 86 (323)
+++++..+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 778777765
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.38 E-value=2.4e-13 Score=107.25 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCcCcCcccccchhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 020613 15 GLWSPEEDEKLIRYITTHGYGCWSEVPEK----AGLQRCGKSCRLRWINYL-----RPDIRRG-RFTPEEEKLIISLHSV 84 (323)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~~----l~~~Rt~kQCR~Rw~n~L-----~p~ikkg-~WT~EED~~Ll~lv~~ 84 (323)
++||+|||++|+++|++||.++|..|++. ++ +||+.+|++||.|++ +|.+++| +...+...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999899999985 66 999999999999988 6777666 6777777888888764
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=104.38 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHH
Q 020613 64 DIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSW 111 (323)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~l 111 (323)
...+++||+|||++|++++.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999876
No 44
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.34 E-value=1.1e-12 Score=106.63 Aligned_cols=52 Identities=25% Similarity=0.510 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhhccC
Q 020613 67 RGRFTPEEEKLIISLHSVVGN-RWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK 118 (323)
+|+||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.+++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~ 53 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRT 53 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccc
Confidence 589999999999999999996 8999999999999999999999999876654
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.34 E-value=3.3e-13 Score=104.10 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=48.6
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCC
Q 020613 4 HSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRG 68 (323)
Q Consensus 4 ~~c~~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg 68 (323)
.--...|++++|+||+|||++|+++|++||.+ |..||+.| +|++.||+.||.. |....+.|
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCSCC
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHccCC
Confidence 33456789999999999999999999999965 99999999 6999999999974 55555443
No 46
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.34 E-value=2.7e-13 Score=114.02 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=60.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020613 8 NQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGN 87 (323)
Q Consensus 8 ~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~ 87 (323)
..+.+++|+||+|||++|+++|.+|| .+|..||..|+ ||++.||+.||.++|++.+..+.|+.+- +......+.
T Consensus 48 l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~ 121 (131)
T 3zqc_A 48 LDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKR 121 (131)
T ss_dssp TSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC---
T ss_pred cCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhh
Confidence 45789999999999999999999999 56999999999 9999999999999999999999988542 000112235
Q ss_pred ChHHHhccC
Q 020613 88 RWAHIASHL 96 (323)
Q Consensus 88 kWskIAk~L 96 (323)
+|+.|++.|
T Consensus 122 ~~~~i~k~~ 130 (131)
T 3zqc_A 122 KAADVPKKL 130 (131)
T ss_dssp ---------
T ss_pred hhhhcchhc
Confidence 688887765
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=2.5e-12 Score=96.27 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHh---ccCCCCCHHHHHHHHHHHhhhh
Q 020613 66 RRGRFTPEEEKLIISLHSVVGNRWAHIA---SHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~kWskIA---k~LpgRT~~qcKnRW~~lLkkk 115 (323)
++.+||+|||+.|++.|++||.+|..|+ .++++||+.++|+||++++++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 6789999999999999999999999999 5789999999999999998763
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=9.4e-13 Score=102.77 Aligned_cols=52 Identities=19% Similarity=0.410 Sum_probs=47.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhc
Q 020613 7 CNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINY 60 (323)
Q Consensus 7 ~~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~ 60 (323)
+......+++||+|||++|+++|++|| ++|..||++|+ +|+..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 345566789999999999999999999 88999999999 99999999999998
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.30 E-value=6.5e-12 Score=103.12 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=49.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccC----CCCCHHHHHHHHHHHhhhhcc
Q 020613 62 RPDIRRGRFTPEEEKLIISLHSVVGN-RWAHIASHL----PGRTDNEIKNYWNSWIKKKIR 117 (323)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G~-kWskIAk~L----pgRT~~qcKnRW~~lLkkk~k 117 (323)
.+..++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++....
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 34578999999999999999999997 999999965 899999999999999986544
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=4.1e-12 Score=100.19 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhhhhc
Q 020613 68 GRFTPEEEKLIISLHSVVGN-RWAHIASH----LPGRTDNEIKNYWNSWIKKKI 116 (323)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-kWskIAk~----LpgRT~~qcKnRW~~lLkkk~ 116 (323)
.+||+|||+.|+++|.+||. +|++|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 99999995 899999999999999997643
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.28 E-value=4.4e-12 Score=106.50 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=50.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhhhhc
Q 020613 61 LRPDIRRGRFTPEEEKLIISLHSVVGN-RWAHIASH----LPGRTDNEIKNYWNSWIKKKI 116 (323)
Q Consensus 61 L~p~ikkg~WT~EED~~Ll~lv~~~G~-kWskIAk~----LpgRT~~qcKnRW~~lLkkk~ 116 (323)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 456788999999999999999999997 99999997 499999999999999998543
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.26 E-value=3.4e-12 Score=117.96 Aligned_cols=55 Identities=24% Similarity=0.526 Sum_probs=49.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hHHHhccCCCCCHHHHHHHHHHHhhhhcc
Q 020613 63 PDIRRGRFTPEEEKLIISLHSVVGNR------WAHIASHLPGRTDNEIKNYWNSWIKKKIR 117 (323)
Q Consensus 63 p~ikkg~WT~EED~~Ll~lv~~~G~k------WskIAk~LpgRT~~qcKnRW~~lLkkk~k 117 (323)
+.+++++||+|||++|+++|.++|++ |..||+.|||||++|||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45789999999999999999999985 99999999999999999999999999875
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.88 E-value=7.6e-13 Score=105.17 Aligned_cols=57 Identities=19% Similarity=0.406 Sum_probs=51.8
Q ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCC
Q 020613 5 SCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRP 63 (323)
Q Consensus 5 ~c~~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p 63 (323)
+-...+.+++|+||+|||++|+++|..||. +|..||..|+ +||..||+.||.++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 345567899999999999999999999996 6999999999 99999999999999864
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.22 E-value=1.7e-12 Score=100.01 Aligned_cols=55 Identities=11% Similarity=0.329 Sum_probs=49.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccCcCcCcccccchhhhccC
Q 020613 7 CNQQKVKRGLWSPEEDEKLIRYITTHGY---GCWSEVPEKAGLQRCGKSCRLRWINYLR 62 (323)
Q Consensus 7 ~~~~kvkKG~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~ 62 (323)
-+++...+++||++||++|+++|.+||. .+|.+||+.|+ |||.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3556778899999999999999999993 47999999999 9999999999998765
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.20 E-value=1.4e-11 Score=98.97 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 66 RRGRFTPEEEKLIISLHSVVG----NRWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G----~kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
.+++||.|||++|++++.+|| ++|.+||+.|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999998764
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.20 E-value=3e-11 Score=101.55 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhhhhcc
Q 020613 62 RPDIRRGRFTPEEEKLIISLHSVVGN-RWAHIASH----LPGRTDNEIKNYWNSWIKKKIR 117 (323)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G~-kWskIAk~----LpgRT~~qcKnRW~~lLkkk~k 117 (323)
....++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++....
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 34457899999999999999999997 99999996 4899999999999999976543
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.4e-10 Score=83.81 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhh
Q 020613 66 RRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIK 113 (323)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLk 113 (323)
..++||+||++++++++.+||++|..||..||+||..||+.+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999987554
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.98 E-value=4.2e-10 Score=90.51 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=58.8
Q ss_pred ccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccC-----CCCCHHHHHHHHHHHhhhhccCC
Q 020613 51 KSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHL-----PGRTDNEIKNYWNSWIKKKIRKP 119 (323)
Q Consensus 51 kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~L-----pgRT~~qcKnRW~~lLkkk~kK~ 119 (323)
.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.++.++..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3478999999976 89999999999999999999999999998 58999999999999998876544
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=1.8e-09 Score=82.94 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhhhhc
Q 020613 64 DIRRGRFTPEEEKLIISLHSVVG----NRWAHIASHLPGRTDNEIKNYWNSWIKKKI 116 (323)
Q Consensus 64 ~ikkg~WT~EED~~Ll~lv~~~G----~kWskIAk~LpgRT~~qcKnRW~~lLkkk~ 116 (323)
..+.+.||.|||++|.+++.+|+ ++|.+||..| |||..+|++||+.+.+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~ 60 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT 60 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence 45678999999999999999997 5799999998 9999999999999987743
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.91 E-value=2.1e-10 Score=92.17 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCccccccccCcCcCcccccchhhhcc
Q 020613 13 KRGLWSPEEDEKLIRYITTHG---YGCWSEVPEKAGLQRCGKSCRLRWINYL 61 (323)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG---~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L 61 (323)
.++.||+|||++|.+++.+|| ...|..||+.++ |||.++|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 467899999999999999997 456999999999 999999999999874
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.75 E-value=8.5e-09 Score=94.64 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 66 RRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
..++||+||++++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999988766
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.72 E-value=4.4e-09 Score=78.67 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccc---cccCcCcCcccccchhhhccC
Q 020613 12 VKRGLWSPEEDEKLIRYITTHGYGCWSEVP---EKAGLQRCGKSCRLRWINYLR 62 (323)
Q Consensus 12 vkKG~WT~EEDe~L~~lV~kyG~~nW~~IA---~~l~~~Rt~kQCR~Rw~n~L~ 62 (323)
.++++||+|||+.|++.|++||. +|..|+ ..+. +|+...+.+||.+..+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 47899999999999999999997 899999 4555 8999999999998764
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=6.5e-09 Score=76.88 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=46.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhcc
Q 020613 7 CNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 (323)
Q Consensus 7 ~~~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L 61 (323)
.++.+...++||+||++++.+++.+|| .+|..||..|+ +|+..||+.+|....
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 455666789999999999999999999 57999999999 999999999987643
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.66 E-value=3.3e-08 Score=76.20 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 67 RGRFTPEEEKLIISLHSVVGN----RWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
...||.+|+++|.+++..|+. +|.+||..|||||..+|+.||..+++.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 468999999999999999984 5999999999999999999999886553
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.52 E-value=6e-08 Score=97.54 Aligned_cols=47 Identities=19% Similarity=0.413 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 68 GRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.+||.||-+++++++.+||++|..||+.+++||..|||++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999865443
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.45 E-value=3.2e-08 Score=75.87 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=44.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccCcCcCcccccchhhhccCC
Q 020613 10 QKVKRGLWSPEEDEKLIRYITTHGY---GCWSEVPEKAGLQRCGKSCRLRWINYLRP 63 (323)
Q Consensus 10 ~kvkKG~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p 63 (323)
...+++.||.|||++|.+++.+|+. +.|..||+.+ ||+..+|+.||..+.+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999984 4699999997 49999999999886543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.44 E-value=2.1e-07 Score=68.67 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hHHHhc-cCCCCCHHHHHHHHHHHhh
Q 020613 67 RGRFTPEEEKLIISLHSVV--------GNR-WAHIAS-HLPGRTDNEIKNYWNSWIK 113 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~--------G~k-WskIAk-~LpgRT~~qcKnRW~~lLk 113 (323)
+.+||.|||+.|++.|.+| |++ |..+|+ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999998764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.38 E-value=7.7e-08 Score=71.03 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCcCcCcccccchhhhccC
Q 020613 14 RGLWSPEEDEKLIRYITTH--------GYGCWSEVPE-KAGLQRCGKSCRLRWINYLR 62 (323)
Q Consensus 14 KG~WT~EEDe~L~~lV~ky--------G~~nW~~IA~-~l~~~Rt~kQCR~Rw~n~L~ 62 (323)
|.+||+|||+.|.++|.+| |..-|..+++ .++ +++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4445999999 787 9999999999999875
No 69
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.9e-06 Score=64.05 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=46.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhc-cCCCCCHHHHHHHHHHHhh
Q 020613 62 RPDIRRGRFTPEEEKLIISLHSVVGNRWAHIAS-HLPGRTDNEIKNYWNSWIK 113 (323)
Q Consensus 62 ~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk-~LpgRT~~qcKnRW~~lLk 113 (323)
.|.+....||+||-++..+++.+||.+|..|++ .|++||..+|...|+...+
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence 366778899999999999999999999999999 6899999999998875443
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.24 E-value=2.8e-07 Score=71.02 Aligned_cols=49 Identities=27% Similarity=0.491 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCccccccccCcCcCcccccchhhhccCC
Q 020613 14 RGLWSPEEDEKLIRYITTHGY---GCWSEVPEKAGLQRCGKSCRLRWINYLRP 63 (323)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p 63 (323)
...||.+|+++|.+++..|+. ++|..||..++ +|+..+|+.||..++.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 457999999999999999975 46999999999 99999999999987653
No 71
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.18 E-value=5.6e-07 Score=82.64 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=46.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccC
Q 020613 10 QKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLR 62 (323)
Q Consensus 10 ~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~ 62 (323)
.....++||+||++++++++.+|| ++|..||+.++ +||..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345678999999999999999999 67999999999 9999999999998764
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.11 E-value=2.9e-06 Score=67.80 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHHhccCCCCCHHHHHHHHHHHhhhhc
Q 020613 69 RFTPEEEKLIISLHSVVGN---RWAHIASHLPGRTDNEIKNYWNSWIKKKI 116 (323)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kWskIAk~LpgRT~~qcKnRW~~lLkkk~ 116 (323)
-||.|||+.|+..+.+-|. .|..||+.|.+|+.+||++||+.+++=.-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999986 79999999999999999999999987543
No 73
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.10 E-value=5.7e-06 Score=79.02 Aligned_cols=99 Identities=13% Similarity=0.238 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccc-------hhhhc---------------------------
Q 020613 15 GLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRL-------RWINY--------------------------- 60 (323)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~-------Rw~n~--------------------------- 60 (323)
+.||..+...++.+..+||..+|..||..|+ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999998 888877642 22110
Q ss_pred -------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----ChHHHh---c---------cCCCCCHHHHHHHH
Q 020613 61 -------------L---RPDIRRGRFTPEEEKLIISLHSVVGN----RWAHIA---S---------HLPGRTDNEIKNYW 108 (323)
Q Consensus 61 -------------L---~p~ikkg~WT~EED~~Ll~lv~~~G~----kWskIA---k---------~LpgRT~~qcKnRW 108 (323)
| .+..+...||++||..|+-++.+||- .|..|. + ++..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02234568999999999999999995 599997 2 45789999999999
Q ss_pred HHHhhh
Q 020613 109 NSWIKK 114 (323)
Q Consensus 109 ~~lLkk 114 (323)
+.+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999853
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.04 E-value=9.4e-07 Score=68.08 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHH
Q 020613 67 RGRFTPEEEKLIISLHSVVGN----RWAHIASHLPGRTDNEIKNYWN 109 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----kWskIAk~LpgRT~~qcKnRW~ 109 (323)
.+.||.+|+++|..+...|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 7999999999999999999885
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.22 E-value=9.5e-07 Score=67.08 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 69 RFTPEEEKLIISLHSVVGN---RWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
-||.|||..|+..+.+-|. .|+.||+.| +||++||++||..+++=
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999997 799999999 99999999999998753
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.92 E-value=1.2e-05 Score=64.50 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=51.5
Q ss_pred chhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCC-----CCCHHHHHHHHHHHhhhhccC
Q 020613 55 LRWINYLRPDIRRGRFTPEEEKLIISLHSVVGNRWAHIASHLP-----GRTDNEIKNYWNSWIKKKIRK 118 (323)
Q Consensus 55 ~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~Lp-----gRT~~qcKnRW~~lLkkk~kK 118 (323)
+-|..+|. ...||.||...|++|+++|+-+|..|+..+. +||-.++|.||+.+.++.++.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45666665 3689999999999999999999999999873 799999999999999886654
No 77
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.77 E-value=4.7e-05 Score=57.71 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhc-cCCCCCHHHHHHHHHHHh
Q 020613 67 RGRFTPEEEKLIISLHSVVGNRWAHIAS-HLPGRTDNEIKNYWNSWI 112 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~kWskIAk-~LpgRT~~qcKnRW~~lL 112 (323)
...||+||-++..+++.+||.+|..|++ .|++||..+|...|+...
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 4589999999999999999999999999 699999999999988543
No 78
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.76 E-value=5.5e-06 Score=63.80 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CccccccccCcCcCcccccchhh
Q 020613 14 RGLWSPEEDEKLIRYITTHGYG---CWSEVPEKAGLQRCGKSCRLRWI 58 (323)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~---nW~~IA~~l~~~Rt~kQCR~Rw~ 58 (323)
.+.||.+|+++|.+++..|+.+ .|.+||+.+| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999754 6999999999 999999999985
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.75 E-value=4.2e-05 Score=61.19 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHh
Q 020613 67 RGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWI 112 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lL 112 (323)
...||+||.++..++...||++|.+||..|++||..+|...|+...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 4579999999999999999999999999999999999999887543
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=7.1e-05 Score=55.52 Aligned_cols=49 Identities=6% Similarity=0.089 Sum_probs=43.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcCcCcccccchhhh
Q 020613 9 QQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPE-KAGLQRCGKSCRLRWIN 59 (323)
Q Consensus 9 ~~kvkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~-~l~~~Rt~kQCR~Rw~n 59 (323)
.|.++...||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 56778889999999999999999995 7999998 588 9999999887754
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.18 E-value=0.00014 Score=73.33 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhc
Q 020613 12 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINY 60 (323)
Q Consensus 12 vkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~ 60 (323)
....+||.+|-+++++++.+|| ++|..||..++ +|+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4568999999999999999999 57999999999 99999999998765
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.17 E-value=0.00044 Score=53.61 Aligned_cols=48 Identities=17% Similarity=0.458 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChHHHhccCC----CCCHHHHHHHHHHHhhh
Q 020613 67 RGRFTPEEEKLIISLHSVVG----------NRWAHIASHLP----GRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G----------~kWskIAk~Lp----gRT~~qcKnRW~~lLkk 114 (323)
...||.+|-..||++..... ..|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 56899999999999987632 14999999872 69999999999998776
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.09 E-value=0.00017 Score=57.80 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccC----cCcCcccccchhhhcc
Q 020613 12 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG----LQRCGKSCRLRWINYL 61 (323)
Q Consensus 12 vkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~----~~Rt~kQCR~Rw~n~L 61 (323)
++.+.||.||++.|.+++++|+.+ |..|+..+. .+|+..++++||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 455899999999999999999955 999999983 2799999999998754
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.96 E-value=8.5e-05 Score=57.69 Aligned_cols=51 Identities=24% Similarity=0.516 Sum_probs=41.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC------C---CccccccccC---cCcCcccccchhhhcc
Q 020613 11 KVKRGLWSPEEDEKLIRYITTHGY------G---CWSEVPEKAG---LQRCGKSCRLRWINYL 61 (323)
Q Consensus 11 kvkKG~WT~EEDe~L~~lV~kyG~------~---nW~~IA~~l~---~~Rt~kQCR~Rw~n~L 61 (323)
+.+...||.+|..+|+.+...... . .|..||..|. ..|++.||+.+|.+..
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999976311 1 4999999873 4799999999998864
No 85
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.93 E-value=0.0023 Score=62.61 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhc----------------------------------
Q 020613 15 GLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINY---------------------------------- 60 (323)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~---------------------------------- 60 (323)
+.||.-+=..++.+..+||..+-..||..|+.+++...++ +|.++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999996456666554 22211
Q ss_pred --------------c----CCC-CCCCCCCHHHHHHHHHHHHHhC----CChHHHhcc------------CCCCCHHHHH
Q 020613 61 --------------L----RPD-IRRGRFTPEEEKLIISLHSVVG----NRWAHIASH------------LPGRTDNEIK 105 (323)
Q Consensus 61 --------------L----~p~-ikkg~WT~EED~~Ll~lv~~~G----~kWskIAk~------------LpgRT~~qcK 105 (323)
| .++ .+...||++||..|+-++.+|| +.|.+|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 1 111 1345799999999999999999 459999442 4679999999
Q ss_pred HHHHHHhhhh
Q 020613 106 NYWNSWIKKK 115 (323)
Q Consensus 106 nRW~~lLkkk 115 (323)
.|...+++--
T Consensus 283 rRc~tLi~~I 292 (374)
T 2y9y_A 283 RRGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.77 E-value=0.00055 Score=54.66 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhh
Q 020613 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWIN 59 (323)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n 59 (323)
...||+||.++..+.+..|| ++|..||..++ +|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 46899999999999999999 56999999999 9999999987754
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.74 E-value=0.004 Score=55.11 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC--CCCccccccc--cCcCcCcccccc-------hhhh-------------------
Q 020613 10 QKVKRGLWSPEEDEKLIRYITTHG--YGCWSEVPEK--AGLQRCGKSCRL-------RWIN------------------- 59 (323)
Q Consensus 10 ~kvkKG~WT~EEDe~L~~lV~kyG--~~nW~~IA~~--l~~~Rt~kQCR~-------Rw~n------------------- 59 (323)
|+-....||..|-..|++++.+|| .+.|..|+.. +. +|+...+.. +...
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV 81 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 455677899999999999999999 5679999764 33 454443321 0000
Q ss_pred -------------------------cc--------------------CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHh
Q 020613 60 -------------------------YL--------------------RPDIRRGRFTPEEEKLIISLHSVVG-NRWAHIA 93 (323)
Q Consensus 60 -------------------------~L--------------------~p~ikkg~WT~EED~~Ll~lv~~~G-~kWskIA 93 (323)
.| .+......||.+||..|+..+.+|| .+|..|-
T Consensus 82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir 161 (211)
T 4b4c_A 82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK 161 (211)
T ss_dssp -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence 00 0111123599999999999999999 8899997
Q ss_pred c--cC------------CCCCHHHHHHHHHHHhh
Q 020613 94 S--HL------------PGRTDNEIKNYWNSWIK 113 (323)
Q Consensus 94 k--~L------------pgRT~~qcKnRW~~lLk 113 (323)
. .| ..++...+..|-..+|+
T Consensus 162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred hChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 6 22 12456789999877765
No 88
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.66 E-value=0.00075 Score=51.02 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcCcCcccccchhhh
Q 020613 13 KRGLWSPEEDEKLIRYITTHGYGCWSEVPE-KAGLQRCGKSCRLRWIN 59 (323)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~nW~~IA~-~l~~~Rt~kQCR~Rw~n 59 (323)
....||++|-++..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 4568999999999999999995 7999999 588 9999999987754
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.30 E-value=0.0018 Score=51.76 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CccccccccCcCcCcccccchhhhcc
Q 020613 16 LWSPEEDEKLIRYITTHGYG--CWSEVPEKAGLQRCGKSCRLRWINYL 61 (323)
Q Consensus 16 ~WT~EEDe~L~~lV~kyG~~--nW~~IA~~l~~~Rt~kQCR~Rw~n~L 61 (323)
.||.|||..++...++.|.. -|..||+.++ +|+..|+.+||+..+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 79999999999999999862 5999999999 999999999998643
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.04 E-value=0.001 Score=50.48 Aligned_cols=46 Identities=13% Similarity=0.305 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--CccccccccCcCcCcccccchhhhccC
Q 020613 15 GLWSPEEDEKLIRYITTHGYG--CWSEVPEKAGLQRCGKSCRLRWINYLR 62 (323)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~--nW~~IA~~l~~~Rt~kQCR~Rw~n~L~ 62 (323)
-.||.|||..++...++.|.. -|..||..+ +|++.|+..||...+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 379999999999999999862 599999988 4999999999987654
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.52 E-value=0.1 Score=39.03 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---hHHHhccC--CCCCHHHHHHHHHHHh
Q 020613 65 IRRGRFTPEEEKLIISLHSVVGNR---WAHIASHL--PGRTDNEIKNYWNSWI 112 (323)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G~k---WskIAk~L--pgRT~~qcKnRW~~lL 112 (323)
..+-.||+|..+..+++|.++|.. +..|.+.| +|.|..+|+.+.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999954 78999976 7999999999887654
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.24 E-value=0.036 Score=44.33 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccC----cCcCcccccchhhhcc
Q 020613 12 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG----LQRCGKSCRLRWINYL 61 (323)
Q Consensus 12 vkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~----~~Rt~kQCR~Rw~n~L 61 (323)
++...||.||...|.+++++|.-. |..|+.... ..|+..+.++||..+-
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 455789999999999999999954 999988764 2688888999987653
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.80 E-value=0.17 Score=48.14 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 67 RGRFTPEEEKLIISLHSVVGN-RWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.+.||..+...++.++.+||+ +|..||..|+|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 357999999999999999996 699999999999999997766655543
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.34 E-value=0.23 Score=43.61 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---CChHHHhcc--CCCCCHHHHHHHHHHHhhh
Q 020613 65 IRRGRFTPEEEKLIISLHSVVG---NRWAHIASH--LPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G---~kWskIAk~--LpgRT~~qcKnRW~~lLkk 114 (323)
-....||+.|-..|++++.+|| .+|..|++. |.+||...++..+..++..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999 579999974 7899999999877766654
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.68 E-value=0.16 Score=47.64 Aligned_cols=28 Identities=39% Similarity=0.878 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 020613 15 GLWSPEEDEKLIRYITTHGYGCWSEVPE 42 (323)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~ 42 (323)
..|+.+||..|+..|.+||.|+|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999954
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=84.92 E-value=0.5 Score=35.22 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=38.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--CccccccccCc-CcCcccccchhhhc
Q 020613 10 QKVKRGLWSPEEDEKLIRYITTHGYG--CWSEVPEKAGL-QRCGKSCRLRWINY 60 (323)
Q Consensus 10 ~kvkKG~WT~EEDe~L~~lV~kyG~~--nW~~IA~~l~~-~Rt~kQCR~Rw~n~ 60 (323)
.+..+-.||+|.-+...++|+..|.. -++.|.+.|+. +.|..++..+.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35677899999999999999999943 26678777652 56777777655543
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.79 E-value=3.9 Score=38.19 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChHHHhc--cCCCCCHHHHHHHHHHHhh
Q 020613 67 RGRFTPEEEKLIISLHSVVG---NRWAHIAS--HLPGRTDNEIKNYWNSWIK 113 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G---~kWskIAk--~LpgRT~~qcKnRW~~lLk 113 (323)
++.||+.|-..|++.+.+|| .+|..|+. .|+.|+...++.-|..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 67899999999999999999 58999987 4789999999998887764
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=63.69 E-value=10 Score=26.26 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 70 FTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
++ +.+..++.++-..|-.+..||+.+ |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 455566666667789999999999 89999999988776554
No 99
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=59.00 E-value=30 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=27.7
Q ss_pred HHHHHHHHhC--------CChHHHhccCCCC--C--HHHHHHHHHHHhhh
Q 020613 77 LIISLHSVVG--------NRWAHIASHLPGR--T--DNEIKNYWNSWIKK 114 (323)
Q Consensus 77 ~Ll~lv~~~G--------~kWskIAk~LpgR--T--~~qcKnRW~~lLkk 114 (323)
+|..+|.+.| +.|..|++.|.-- + ...+|..|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3666777776 4799999988222 1 36889999988865
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=58.65 E-value=7.1 Score=31.46 Aligned_cols=38 Identities=13% Similarity=0.286 Sum_probs=29.3
Q ss_pred HHHHHHHHhC--------CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 77 LIISLHSVVG--------NRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 77 ~Ll~lv~~~G--------~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.|..+|.+.| +.|..||..|.--....+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 3667777777 4799999988433478999999998854
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=57.66 E-value=15 Score=26.21 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHH----hCCChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 73 EEEKLIISLHSV----VGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 73 EED~~Ll~lv~~----~G~kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
+.+..++.+.-. .|..+..||+.+ |-|...|+.+....+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344445555544 578899999999 999999999887766543
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.56 E-value=16 Score=28.63 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=27.6
Q ss_pred HHHHHHHHhC--------CChHHHhccCCCCC----HHHHHHHHHHHhhh
Q 020613 77 LIISLHSVVG--------NRWAHIASHLPGRT----DNEIKNYWNSWIKK 114 (323)
Q Consensus 77 ~Ll~lv~~~G--------~kWskIAk~LpgRT----~~qcKnRW~~lLkk 114 (323)
.|..+|.+.| +.|..||+.|.--. ...+|..|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3666666666 47999999983322 46889999988765
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=53.59 E-value=3.8 Score=33.78 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=33.8
Q ss_pred CccccccccCcCcCc----ccccchhhhccCCCCCCCCCCHHHHHHHHHHHH
Q 020613 36 CWSEVPEKAGLQRCG----KSCRLRWINYLRPDIRRGRFTPEEEKLIISLHS 83 (323)
Q Consensus 36 nW~~IA~~l~~~Rt~----kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~ 83 (323)
.|.+||..|+...+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 599999999854433 356888999887632 378899998887764
No 104
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=53.36 E-value=15 Score=25.75 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=30.6
Q ss_pred HHHHHHHHHH----HhCCChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 74 EEKLIISLHS----VVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 74 ED~~Ll~lv~----~~G~kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
.+..++.+.- ..|..+..||+.| |-|...|+.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444444444 3478899999999 999999999888776553
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=53.26 E-value=15 Score=29.56 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHhC--------CChHHHhccCCCCC----HHHHHHHHHHHhhh
Q 020613 77 LIISLHSVVG--------NRWAHIASHLPGRT----DNEIKNYWNSWIKK 114 (323)
Q Consensus 77 ~Ll~lv~~~G--------~kWskIAk~LpgRT----~~qcKnRW~~lLkk 114 (323)
+|..+|.+.| +.|..||..|.--. ...+|..|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4667777777 47999999982222 56889999988855
No 106
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=51.19 E-value=78 Score=24.41 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCC------CCCCCCCCHHHHHHHHHHHHHhCCC
Q 020613 15 GLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRP------DIRRGRFTPEEEKLIISLHSVVGNR 88 (323)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p------~ikkg~WT~EED~~Ll~lv~~~G~k 88 (323)
...|.++-..++.++. .| ..-.+||+.++ .+...++ ||.+.... .......+.+++..|+.+...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4578888777777763 45 34788999987 4444433 33332111 1122357888888888873332234
Q ss_pred hHHHhccCCC--CCHHHHHHHH
Q 020613 89 WAHIASHLPG--RTDNEIKNYW 108 (323)
Q Consensus 89 WskIAk~Lpg--RT~~qcKnRW 108 (323)
=..|+..+ | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 57888888 4 5666665543
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.59 E-value=20 Score=29.09 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=28.0
Q ss_pred HHHHHHHHhC--------CChHHHhccCCCCC----HHHHHHHHHHHhhh
Q 020613 77 LIISLHSVVG--------NRWAHIASHLPGRT----DNEIKNYWNSWIKK 114 (323)
Q Consensus 77 ~Ll~lv~~~G--------~kWskIAk~LpgRT----~~qcKnRW~~lLkk 114 (323)
+|..+|.+.| +.|..||+.|.--+ ...+|..|..+|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 3666677776 47999999883222 46889999998865
No 108
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=49.07 E-value=30 Score=33.69 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-hHHHhccCC-CCCHHHHHHHHHHHhhhh
Q 020613 68 GRFTPEEEKLIISLHSVVGNR-WAHIASHLP-GRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~k-WskIAk~Lp-gRT~~qcKnRW~~lLkkk 115 (323)
+.||.-+=..++.++.+||+. -..||..|. |+|..+|+ +|...+=.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHh
Confidence 479999999999999999964 999999997 99999999 455554333
No 109
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=47.95 E-value=8.8 Score=33.52 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=21.1
Q ss_pred CCCCCCCCHHHHHHHH--------HHHHHhCCCCccccc
Q 020613 11 KVKRGLWSPEEDEKLI--------RYITTHGYGCWSEVP 41 (323)
Q Consensus 11 kvkKG~WT~EEDe~L~--------~lV~kyG~~nW~~IA 41 (323)
.-.+|-||+++|+.|+ +++++|| |..|.
T Consensus 111 ~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp TTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 3467889999999765 6888888 55554
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=46.43 E-value=26 Score=26.04 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 73 EEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 73 EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
+.+..++.++...|-.-..||+.| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445556666666788899999999 99999999988876554
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=45.83 E-value=9.7 Score=31.21 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=28.1
Q ss_pred HHHHHHHhC--------CChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 78 IISLHSVVG--------NRWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 78 Ll~lv~~~G--------~kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
|..+|.+.| +.|..||..|.--....+|..|..+|-+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 555555555 35999999873334899999999998763
No 112
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=42.83 E-value=30 Score=28.13 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=28.7
Q ss_pred HHHHHHHHhC--------CChHHHhccC--CCC---CHHHHHHHHHHHhhh
Q 020613 77 LIISLHSVVG--------NRWAHIASHL--PGR---TDNEIKNYWNSWIKK 114 (323)
Q Consensus 77 ~Ll~lv~~~G--------~kWskIAk~L--pgR---T~~qcKnRW~~lLkk 114 (323)
+|..+|.+.| +.|..||..| +.. ....+|..|..+|-+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4667777777 4799999988 322 257899999998865
No 113
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=42.48 E-value=24 Score=28.86 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=47.0
Q ss_pred CCCCCCHHHH--HHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHHHHHHhC----
Q 020613 13 KRGLWSPEED--EKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHSVVG---- 86 (323)
Q Consensus 13 kKG~WT~EED--e~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G---- 86 (323)
-+.+|.+.+. +.|.+..+..|.. ...|+. ++ +|.-. + -+|..+|.+.|
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~-i~-gk~lD-L----------------------~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGIT-MDELPL-IG-GCELD-L----------------------ACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCC-CSSCCE-ET-TEECC-H----------------------HHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCCC-CCCCCc-CC-CEecc-H----------------------HHHHHHHHHcCcHHH
Confidence 3557887765 4577777777743 444432 22 22111 1 23667777777
Q ss_pred ----CChHHHhccC--CCC---CHHHHHHHHHHHhhh
Q 020613 87 ----NRWAHIASHL--PGR---TDNEIKNYWNSWIKK 114 (323)
Q Consensus 87 ----~kWskIAk~L--pgR---T~~qcKnRW~~lLkk 114 (323)
+.|..||..| |.- ....+|..|..+|-+
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4799999988 322 246889999888754
No 114
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.20 E-value=48 Score=23.35 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 70 FTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
+|+.|-+.| .++ ..|-.-..||+.| |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455554444 444 6788899999999 89999999988776655
No 115
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=40.73 E-value=32 Score=28.74 Aligned_cols=38 Identities=16% Similarity=0.389 Sum_probs=28.4
Q ss_pred HHHHHHHHhC--------CChHHHhccC--CCC---CHHHHHHHHHHHhhh
Q 020613 77 LIISLHSVVG--------NRWAHIASHL--PGR---TDNEIKNYWNSWIKK 114 (323)
Q Consensus 77 ~Ll~lv~~~G--------~kWskIAk~L--pgR---T~~qcKnRW~~lLkk 114 (323)
+|..+|.+.| +.|..||..| +.. ....+|..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 3666777776 4799999988 322 257899999999865
No 116
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=39.02 E-value=14 Score=28.47 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=25.1
Q ss_pred HHHHHHHhC--------CChHHHhccCCCC----CHHHHHHHHHHHhhh
Q 020613 78 IISLHSVVG--------NRWAHIASHLPGR----TDNEIKNYWNSWIKK 114 (323)
Q Consensus 78 Ll~lv~~~G--------~kWskIAk~LpgR----T~~qcKnRW~~lLkk 114 (323)
|..+|.+.| +.|.+||+.|.-- ....+|..|..+|-.
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 556666665 5799999987221 256788888777643
No 117
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.82 E-value=6.4 Score=31.75 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCcCcCcccccchhhhccCC
Q 020613 24 KLIRYITTHGY-------GCWSEVPEKAGLQRCGKSCRLRWINYLRP 63 (323)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p 63 (323)
+|..+|.+.|. +.|.+||..++... +..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46667777652 36999999998444 77788888888764
No 118
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=38.82 E-value=40 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 020613 71 TPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKN 106 (323)
Q Consensus 71 T~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKn 106 (323)
+..-+..|..++...|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677888889999999999999999 777766644
No 119
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=38.26 E-value=38 Score=27.62 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=24.4
Q ss_pred hCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 85 VGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 85 ~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.|-....||+.| |-+...|+.+....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467899999999 99999999988876544
No 120
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.63 E-value=35 Score=25.21 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH----hCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 74 EEKLIISLHSV----VGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 74 ED~~Ll~lv~~----~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.+..++.+.-. .|-.+..||..| |-|...|+.+....+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555444 567899999999 99999999987776654
No 121
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.15 E-value=37 Score=27.99 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhhccCC
Q 020613 73 EEEKLIISLHSVVGN-RWAHIASHLPGRTDNEIKNYWNSWIKKKIRKP 119 (323)
Q Consensus 73 EED~~Ll~lv~~~G~-kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK~ 119 (323)
+-|.+|+.+..+-|. .|..||+.+ |-|...|+.|.+.+.+..+-+.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeee
Confidence 457788888777664 699999999 9999999999999998877553
No 122
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=37.12 E-value=20 Score=28.16 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=27.3
Q ss_pred HHHHHHHHhC--------CChHHHhccCC--CC---CHHHHHHHHHHHhhh
Q 020613 77 LIISLHSVVG--------NRWAHIASHLP--GR---TDNEIKNYWNSWIKK 114 (323)
Q Consensus 77 ~Ll~lv~~~G--------~kWskIAk~Lp--gR---T~~qcKnRW~~lLkk 114 (323)
.|..+|.+.| +.|..||..|. .. ....+|..|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3666667666 57999999872 21 246899999988865
No 123
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.35 E-value=63 Score=24.34 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 66 RRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.....|+.|-+.|.-++ .|..-..||+.| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34468888877666554 788899999999 99999999998887765
No 124
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=35.04 E-value=52 Score=24.74 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhh
Q 020613 69 RFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK 115 (323)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkkk 115 (323)
..|+.|-+.|.- + ..|..-..||+.| |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467766665554 4 7788899999999 999999999888776553
No 125
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=34.80 E-value=26 Score=28.46 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=24.7
Q ss_pred hCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 85 VGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 85 ~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.|-....||+.| |-|...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467899999999 99999999998877654
No 126
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.33 E-value=37 Score=27.21 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 020613 75 EKLIISLHSVVGNRWAHIASHLPGRTDNEIKN 106 (323)
Q Consensus 75 D~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKn 106 (323)
|..|..++...|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 777766543
No 127
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.18 E-value=52 Score=24.07 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 69 RFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
..|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467766655554 4 6788899999999 89999999988776655
No 128
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.03 E-value=56 Score=22.53 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 68 GRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
..+|+.|-+.|.. + ..|..-..||+.+ |-+...|+.+...+.++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777766655 4 6677899999999 88999999988876654
No 129
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=33.45 E-value=42 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 020613 77 LIISLHSVVGNRWAHIASHLPGRTDNEIKN 106 (323)
Q Consensus 77 ~Ll~lv~~~G~kWskIAk~LpgRT~~qcKn 106 (323)
.|..++...|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666888999999999999 777666543
No 130
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=33.27 E-value=40 Score=27.07 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 020613 65 IRRGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKN 106 (323)
Q Consensus 65 ikkg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKn 106 (323)
+-...=|.+ .|..+++..|..|..+|+.| |=+..+|..
T Consensus 17 ~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 333344444 46666889999999999999 777766543
No 131
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.00 E-value=34 Score=29.80 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.7
Q ss_pred CCCCCCCCCHHHHHHHH
Q 020613 63 PDIRRGRFTPEEEKLII 79 (323)
Q Consensus 63 p~ikkg~WT~EED~~Ll 79 (323)
|....|-||.|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56678999999999887
No 132
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Probab=32.49 E-value=8.8 Score=32.51 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=6.1
Q ss_pred ecccCCCCCCCchhhhcc
Q 020613 229 SGIDNHHHHYLPPLIENM 246 (323)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~ 246 (323)
-|.|...|+|.-||-|||
T Consensus 20 ~as~n~dh~yvyplpenm 37 (182)
T 2vty_A 20 EASNNVDHDYVYPLPENM 37 (182)
T ss_dssp ----------CTTSCHHH
T ss_pred hcccCCCCCceeeCCccc
Confidence 355666779999997654
No 133
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=30.46 E-value=10 Score=31.03 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCcCcC----cccccchhhhccCC
Q 020613 24 KLIRYITTHGY-------GCWSEVPEKAGLQRC----GKSCRLRWINYLRP 63 (323)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IA~~l~~~Rt----~kQCR~Rw~n~L~p 63 (323)
+|..+|.+.|. +.|.+||..++...+ +...+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777662 359999999985443 34567778887765
No 134
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.46 E-value=72 Score=21.27 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 75 EKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 75 D~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
+..++.+ -..|-.-..||+.| |-+...|+.+...++++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3445555 35677889999999 99999999988877665
No 135
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.13 E-value=67 Score=25.20 Aligned_cols=40 Identities=8% Similarity=0.048 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 74 EEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 74 ED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
.+..++.++...|-....||+.+ |-|...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666667788999999999 99999999887766543
No 136
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.06 E-value=51 Score=25.73 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=24.6
Q ss_pred HhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 84 VVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 84 ~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
..|-....||+.| |-|...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999988776543
No 137
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.52 E-value=64 Score=26.95 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=26.8
Q ss_pred HHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 78 IISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 78 Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
++.+.-..|-....||+.| |-|...|+.+....+++
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3333334577899999999 99999999888766543
No 138
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=28.40 E-value=63 Score=25.36 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 020613 75 EKLIISLHSVVGNRWAHIASHLPGRTDNEIKN 106 (323)
Q Consensus 75 D~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKn 106 (323)
+..|..++...|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3455667788899999999999 777776644
No 139
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.60 E-value=1.1e+02 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhhcc
Q 020613 73 EEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKKIR 117 (323)
Q Consensus 73 EED~~Ll~lv~~~G-~kWskIAk~LpgRT~~qcKnRW~~lLkkk~k 117 (323)
+-|..|+.+....| -.+..||+.+ |-+...|+.|.+.+.+..+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44566777776666 4799999999 88999999999999877654
No 140
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.00 E-value=99 Score=23.14 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHH
Q 020613 72 PEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYW 108 (323)
Q Consensus 72 ~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW 108 (323)
.-|.+.|.++...+|.+.++.|+.| |=+...+..|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477888899999999999999999 77777665543
No 141
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.72 E-value=65 Score=23.78 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 69 RFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
..|+.|-+.|. ++ ..|..-..||+.| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35666655554 44 5788899999999 99999999988876655
No 142
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.20 E-value=99 Score=25.83 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhhccC
Q 020613 73 EEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKKIRK 118 (323)
Q Consensus 73 EED~~Ll~lv~~~G-~kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK 118 (323)
+-|..|+.+..+.| ..+..||+.+ |-|...|+.|.+.+.+..+-+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 45667777777766 4699999999 899999999999998887654
No 143
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.10 E-value=88 Score=21.76 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHH
Q 020613 73 EEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNY 107 (323)
Q Consensus 73 EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnR 107 (323)
-|.+.|.++...++.+.++.|+.| |=+...+..+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 477888899999999999999998 6666555443
No 144
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.86 E-value=1.9e+02 Score=22.68 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 020613 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINY------LRPDIR----RGRFTPEEEKLIISLHS 83 (323)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~------L~p~ik----kg~WT~EED~~Ll~lv~ 83 (323)
....|.++-..++.++. .| ....+||+.++ .+...+ .||.+. +.+... ....+.++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 35789888888888874 45 34788999988 433333 233332 233222 23478888888888887
Q ss_pred HhCC-ChHHHhccC
Q 020613 84 VVGN-RWAHIASHL 96 (323)
Q Consensus 84 ~~G~-kWskIAk~L 96 (323)
+.+. .-..|+..+
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 6432 223455544
No 145
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=24.45 E-value=32 Score=28.85 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=26.6
Q ss_pred cccccccCcCcCcccccchhhhccCCCCCCCCCCHHHHHHHHH
Q 020613 38 SEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIIS 80 (323)
Q Consensus 38 ~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ikkg~WT~EED~~Ll~ 80 (323)
..||..+. |+++.+||..+. +. ..||+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 46777777 899999998662 32 3599999988764
No 146
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=24.07 E-value=32 Score=28.72 Aligned_cols=53 Identities=26% Similarity=0.449 Sum_probs=32.9
Q ss_pred HHHHHHHHhCC-------CCccccccccCcCcC----cccccchhhhccCC--CCCCCCCCHHHHH
Q 020613 24 KLIRYITTHGY-------GCWSEVPEKAGLQRC----GKSCRLRWINYLRP--DIRRGRFTPEEEK 76 (323)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IA~~l~~~Rt----~kQCR~Rw~n~L~p--~ikkg~WT~EED~ 76 (323)
+|..+|.+.|. +.|.+||..|+...+ +...+..|.++|-| ...+|.=.++|-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~ 133 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQ 133 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 45666666652 259999999985432 34678888888876 2234444444433
No 147
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=23.34 E-value=25 Score=34.57 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=14.5
Q ss_pred cccccCCcceeeecccCCCCCCCch
Q 020613 217 QAQALPPSTSFTSGIDNHHHHYLPP 241 (323)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
|-.+.|....|++..+-. .||||
T Consensus 21 ~~~~~~~~~~~~~~~~q~--~yl~~ 43 (464)
T 4fx5_A 21 QSNAMSQYPDFAFEINQN--EFLAA 43 (464)
T ss_dssp CCC--CCCCEEEEEEECC--CEECT
T ss_pred eccCCCCCCceEEEeccc--cccCC
Confidence 334556667788877764 68997
No 148
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.76 E-value=1.4e+02 Score=22.96 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 67 RGRFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
....|+.|-+.|.-+ ..|..-.+||+.| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l~--~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLF--AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHH--HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH--HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456888888776543 3688899999999 88999999988877765
No 149
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.18 E-value=73 Score=25.68 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 73 EEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 73 EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
+++..++.+....|-.-..||+.| |-+...|+.|....+++
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAE 136 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 334445555555577899999999 99999999988766544
No 150
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=21.72 E-value=1.4e+02 Score=18.03 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHH
Q 020613 69 RFTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYW 108 (323)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW 108 (323)
..+.++-..++.++ .-|.....||+.| |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677766777665 4577899999999 88888776643
No 151
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.09 E-value=1.4e+02 Score=23.82 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhhccCC
Q 020613 73 EEEKLIISLHSVVG-NRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKP 119 (323)
Q Consensus 73 EED~~Ll~lv~~~G-~kWskIAk~LpgRT~~qcKnRW~~lLkkk~kK~ 119 (323)
+-|..|+.+....| -.+..||+.+ |-|...|..|.+.+.+..+-+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEE
Confidence 34556777776666 4799999999 8999999999999988876543
No 152
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=20.98 E-value=22 Score=29.48 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCCccccccccCcCcCcccccchhhhccCCC
Q 020613 20 EEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPD 64 (323)
Q Consensus 20 EEDe~L~~lV~kyG~~nW~~IA~~l~~~Rt~kQCR~Rw~n~L~p~ 64 (323)
+-|.+|+.++++.|.-.|.+||+.++ -+...|+.|..+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45888999999988889999999998 67777888777654433
No 153
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.02 E-value=1.2e+02 Score=23.92 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 020613 70 FTPEEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKK 114 (323)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kWskIAk~LpgRT~~qcKnRW~~lLkk 114 (323)
+++. +..++.++...|-.-..||+.+ |-|...|+.+.....++
T Consensus 23 L~~~-~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDK-QMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHH-HHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4444 4455666667788999999999 99999999988776543
Done!