BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020615
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/296 (67%), Positives = 238/296 (80%), Gaps = 3/296 (1%)
Query: 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF 87
LS+NFY+ CP L+T+KSAV SAV+KE RMGASLLRLHFHDCFV GCD S+LLDDTS+F
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 88 TGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKL 147
TGEKT+GPN NS RGFEV+D IKS+VE +CPGVVSCADILA+AAR SV LGG SWNV L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 148 GRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFR 207
GRRDS TASL++ANS +P P LS LI+ F KG + K++V LSGAHTIGQA+C AFR
Sbjct: 122 GRRDSTTASLSSANSD-LPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 208 NRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHS 267
RIYNESNI+ ++AK+ + NCP GD NL+P D +PNKFDN YY +L N+KGLLHS
Sbjct: 181 TRIYNESNIDPTYAKSLQANCPSV--GGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHS 238
Query: 268 DQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNCRRPN 323
DQ LFNG STDS V+ Y++N+ TFN+DF AMIKMG++SPLTG+ G+IR NCR+ N
Sbjct: 239 DQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 320 bits (821), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 212/306 (69%), Gaps = 12/306 (3%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FYS TCP V+S +Q A+ + R+GASL+RLHFHDCFVNGCD SILLDDT S
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
EK +GPN+NSARGF VVD+IK+ +E CPGVVSC+D+LA+A+ SV++ GGPSW V
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAF 206
LGRRDS TA+LA ANS IP P +LSN+ +F A GL+ D+VALSGAHT G+ARC F
Sbjct: 122 LGRRDSLTANLAGANSS-IPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVF 180
Query: 207 RNRIYN-------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL 259
NR++N + + S+ + CP+ GS + + LD +P+ FDN Y+ +L
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQ-NGSA-STITNLDLSTPDAFDNNYFANLQ 238
Query: 260 NQKGLLHSDQILFN--GGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRK 317
+ GLL SDQ LF+ G ST ++V+++ASN F FA +MI MG+ISPLTGS GEIR
Sbjct: 239 SNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRL 298
Query: 318 NCRRPN 323
+C++ N
Sbjct: 299 DCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 301 bits (770), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 155/306 (50%), Positives = 207/306 (67%), Gaps = 14/306 (4%)
Query: 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF 87
L+ FY+ TCP V++ VQ A + R+GASL+RLHFHDCFV GCD SILLD++ S
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 88 TGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKL 147
EK +GPN NSARGF VVD+IK+ +E CPGVVSC D+LA+A++ SV++ GGPSW V L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 148 GRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFR 207
GRRD+ TA+ A ANS IP PT LSN+ ++F A GL+ D+VALSGAHT G+A C F
Sbjct: 124 GRRDTLTANQAGANSS-IPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 208 NRIYN-------ESNIESSFAKNRRGNCP-RATGSGDNNLAPLDFQSPNKFDNQYYKHLL 259
NR++N + + ++ + CP + GSG N LD +P+ FDN Y+ +L
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTN---LDLSTPDAFDNNYFTNLQ 239
Query: 260 NQKGLLHSDQILFN--GGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRK 317
+ GLL SDQ LF+ G +T ++V+++ASN F FA +MI MG+ISPLTGS GEIR
Sbjct: 240 SNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRL 299
Query: 318 NCRRPN 323
+C++ N
Sbjct: 300 DCKKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 291 bits (744), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 155/308 (50%), Positives = 197/308 (63%), Gaps = 20/308 (6%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QLS + Y+K+CP L+ V+ V A+ E RM ASL+RLHFHDCFVNGCD S+LLD S
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
EK + PNINSARGFEV+D IK+ VE CPGVVSCADIL +AAR SV + GGP W V
Sbjct: 61 ---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAF 206
LGR+D A+ +AN+ +P P L +I +F A L+ D+VALSGAHT GQA+C F
Sbjct: 118 LGRKDGLVANQNSANN--LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVF 175
Query: 207 RNRIYN-------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL 259
NR++N ++ +E+S N + CP G N APLD + + FDN Y+K+LL
Sbjct: 176 SNRLFNFTGAGNPDATLETSLLSNLQTVCP--LGGNSNITAPLDRSTTDTFDNNYFKNLL 233
Query: 260 NQKGLLHSDQILFNG----GSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
KGLL SDQILF+ +T LV Y+ + F DF AMI+MG+IS G+ GE+
Sbjct: 234 EGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEV 291
Query: 316 RKNCRRPN 323
R NCR N
Sbjct: 292 RTNCRVIN 299
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 198/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C +
Sbjct: 122 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 316 RKNCR 320
R NCR
Sbjct: 299 RLNCR 303
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 275 bits (703), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 198/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L +D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDMDLRTPTIFDNKYYVNL 238
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 316 RKNCR 320
R NCR
Sbjct: 299 RLNCR 303
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 197/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 316 RKNCR 320
R NCR
Sbjct: 298 RLNCR 302
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 197/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 316 RKNCR 320
R NCR
Sbjct: 299 RLNCR 303
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 197/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 316 RKNCR 320
R NCR
Sbjct: 298 RLNCR 302
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 197/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 316 RKNCR 320
R NCR
Sbjct: 298 RLNCR 302
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 274 bits (701), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 197/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 316 RKNCR 320
R NCR
Sbjct: 299 RLNCR 303
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 273 bits (699), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 144/305 (47%), Positives = 197/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 316 RKNCR 320
R NCR
Sbjct: 299 RLNCR 303
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 197/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG H+ G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 316 RKNCR 320
R NCR
Sbjct: 298 RLNCR 302
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 196/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VAL G HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 316 RKNCR 320
R NCR
Sbjct: 298 RLNCR 302
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 196/305 (64%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHF DCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 316 RKNCR 320
R NCR
Sbjct: 299 RLNCR 303
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/305 (46%), Positives = 195/305 (63%), Gaps = 14/305 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+L LHF DCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
F EK + N NSARGF V+D +K+ VE CP VSCAD+L IAA+ SV + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 205
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 206 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 259 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 315
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 316 RKNCR 320
R NCR
Sbjct: 298 RLNCR 302
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 268 bits (684), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 195/303 (64%), Gaps = 14/303 (4%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +TCP L V + A + R+GASL+RLHFHDCFV GCDGS+LL++T +
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVK 146
E+ + PNINS RG +VV+DIK+ VE CP VSCADILAIAA + + GGP W V
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 147 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAF 206
LGRRDS TA+ AN +P P L+ L F +GL+ D+V LSG HT G+ARC F
Sbjct: 121 LGRRDSLTANRTLANQN-LPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTF 179
Query: 207 RNRIYNESN-------IESSFAKNRRGNCPR-ATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
NR+YN SN + +++ + R CP+ ATG +NL LD +P++FDN+YY +L
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATG---DNLTNLDLSTPDQFDNRYYSNL 236
Query: 259 LNQKGLLHSDQILFN--GGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIR 316
L GLL SDQ LF+ G T +V++++SN TF S+F +MIKMG+I LTG GEIR
Sbjct: 237 LQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIR 296
Query: 317 KNC 319
C
Sbjct: 297 LQC 299
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 179/296 (60%), Gaps = 7/296 (2%)
Query: 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF 87
LS +FY +TCP+ + V+ VQ AV K+ + A LLRLHFHDCFV GCD S+LLD +++
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 88 TGEKTSGPNIN-SARGFEVVDDIKSKVEKVCPG-VVSCADILAIAARHSVAILGGPSWNV 145
GE+ + PN+ F+ V+DI+ ++E+ C G VVSC+DILA+AAR SV + GGP + V
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 146 KLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVA 205
LGRRDS++ + +P P+S + +L+ GL A D+V +SG HTIG A C +
Sbjct: 129 PLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSS 188
Query: 206 FRNRIYNESN--IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
F +R++ + I +F + CP G + LD ++PN FDN+YY L+N++G
Sbjct: 189 FEDRLFPRPDPTISPTFLSRLKRTCP---AKGTDRRTVLDVRTPNVFDNKYYIDLVNREG 245
Query: 264 LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNC 319
L SDQ LF T +V +A + + F F ++ KMG + T GE+R+NC
Sbjct: 246 LFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 169/303 (55%), Gaps = 8/303 (2%)
Query: 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF 87
L FY+ +CP + V+ AV +A + + L+R+HFHDCFV GCD S+LLD T++
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 88 TGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKL 147
T EK + PN S RGFEV+ KS VE CP VSCADILA AAR S + G ++ V
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 148 GRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFR 207
GRRD T SLA+ + IP P + LIN F K L+A +MV LSGAH+IG A C +F
Sbjct: 122 GRRDG-TVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFT 180
Query: 208 NRIYN-------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLN 260
NR+YN + + S+A R CP + LD +P+ DN YY +
Sbjct: 181 NRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQL 240
Query: 261 QKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNCR 320
GLL SDQ L + + V A N + S FA AM+KMG I LTG+ GEIR NC
Sbjct: 241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
Query: 321 RPN 323
N
Sbjct: 301 VVN 303
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 121/294 (41%), Gaps = 59/294 (20%)
Query: 34 SKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTS 93
S+ P + +++ ++ +S++ +G SL+RL +H+ C D S +
Sbjct: 2 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDC----FKKDGSPNSASMRF 57
Query: 94 GPNINSA--RGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRD 151
P A +G ++ ++K P + S AD+ +AA ++ +GGP+ GR D
Sbjct: 58 KPECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVD 116
Query: 152 SKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIY 211
+K S+ + G +P + T S++ F+ G + ++ VAL GAHT G+ + F
Sbjct: 117 AKDGSVCGPD-GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH-IEF----- 169
Query: 212 NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLH----- 266
S + ++ G FDN ++ LL++ +L+
Sbjct: 170 --SGYHGPWTHDKNG-----------------------FDNSFFTQLLDEDWVLNPKVEQ 204
Query: 267 ---------------SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
SD L S V YA ++ FN DFA A K+ ++
Sbjct: 205 MQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 121/294 (41%), Gaps = 59/294 (20%)
Query: 34 SKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTS 93
S+ P + +++ ++ +S++ +G SL+RL +H+ C D S +
Sbjct: 1 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDC----FKKDGSPNSASMRF 56
Query: 94 GPNINSA--RGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRD 151
P A +G ++ ++K P + S AD+ +AA ++ +GGP+ GR D
Sbjct: 57 KPECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVD 115
Query: 152 SKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIY 211
+K S+ + G +P + T S++ F+ G + ++ VAL GAHT G+ + F
Sbjct: 116 AKDGSVCGPD-GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH-IEF----- 168
Query: 212 NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLH----- 266
S + ++ G FDN ++ LL++ +L+
Sbjct: 169 --SGYHGPWTHDKNG-----------------------FDNSFFTQLLDEDWVLNPKVEQ 203
Query: 267 ---------------SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
SD L S V YA ++ FN DFA A K+ ++
Sbjct: 204 MQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 257
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 121/294 (41%), Gaps = 59/294 (20%)
Query: 34 SKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTS 93
S+ P + +++ ++ +S++ +G SL+RL +H+ C D S +
Sbjct: 2 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDC----FKKDGSPNSASMRF 57
Query: 94 GPNINSA--RGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRD 151
P A +G ++ ++K P + S AD+ +AA ++ +GGP+ GR D
Sbjct: 58 KPECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVD 116
Query: 152 SKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIY 211
+K S+ + G +P + T S++ F+ G + ++ VAL GAHT G+ + F
Sbjct: 117 AKDGSVCGPD-GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETH-IEF----- 169
Query: 212 NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLH----- 266
S + ++ G FDN ++ LL++ +L+
Sbjct: 170 --SGYHGPWTHDKNG-----------------------FDNSFFTQLLDEDWVLNPKVEQ 204
Query: 267 ---------------SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
SD L S V YA ++ FN DFA A K+ ++
Sbjct: 205 MQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 115/289 (39%), Gaps = 64/289 (22%)
Query: 35 KTCPKLLNTVKSAVQSAVSK------ERRMGASLLRLHFHDC-------FVNGCDGSILL 81
K+ P + + A++ A K E++ +LRL +H G G+I
Sbjct: 2 KSYPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTI-- 59
Query: 82 DDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGP 141
E G N G ++ + +++ P +VS AD +A +V I GGP
Sbjct: 60 ----KHQAELAHGAN----NGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGP 110
Query: 142 SWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHTIGQ 200
GR D G +P T +L + F +A GLS +D+VALSG HTIG
Sbjct: 111 EVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGA 166
Query: 201 ARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL- 259
A + R S E + N P FDN Y+ LL
Sbjct: 167 AH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTELLT 195
Query: 260 -NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
+ GLL SD+ L LV YA++ F +D+A A +K+ ++
Sbjct: 196 GEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 44/261 (16%)
Query: 62 LLRLHFHDCFV-----------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIK 110
++RL +HD G +GS+ F E G N ++ IK
Sbjct: 28 MVRLGWHDAGTYNKNIEEWPQRGGANGSL------RFDVELKHGANAGLVNALNLLKPIK 81
Query: 111 SKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPP--P 168
K V + AD+ +A+ ++ GGP +K GR D T G +P P
Sbjct: 82 DKYSGV-----TYADLFQLASATAIEEAGGPKIPMKYGRVDV-TEPEQCPEEGRLPDAGP 135
Query: 169 TSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNC 228
S +L + F GL+ K++VALSGAHT+G++R +R E+ + K +
Sbjct: 136 PSPAQHLRDVFYRMGLNDKEIVALSGAHTLGRSRP----DRS-GWGKPETKYTK----DG 186
Query: 229 PRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG----LLHSDQILFNGGSTDSLVSTY 284
P A G L KFDN Y+K + ++ +L +D LF S Y
Sbjct: 187 PGAPGGQSWTAQWL------KFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKY 240
Query: 285 ASNSKTFNSDFAAAMIKMGDI 305
A++ + F D+A A K+ ++
Sbjct: 241 AADPEAFFKDYAEAHAKLSNL 261
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 116/293 (39%), Gaps = 72/293 (24%)
Query: 35 KTCPKLLNTVKSAVQSAVSK------ERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF- 87
K+ P + + AV+ A K E+R +LRL +H +F
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSA--------------GTFD 59
Query: 88 TGEKTSGP----------NINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAI 137
G KT GP ++ G ++ + ++ P ++S AD +A +V +
Sbjct: 60 KGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEV 118
Query: 138 LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAH 196
GGP GR D G +P T +L + F +A GL+ +D+VALSG H
Sbjct: 119 TGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGH 174
Query: 197 TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYK 256
TIG A A S E + N P FDN Y+
Sbjct: 175 TIGAAHKEA--------SGFEGPWTSN-----------------------PLIFDNSYFT 203
Query: 257 HLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 117/293 (39%), Gaps = 72/293 (24%)
Query: 35 KTCPKLLNTVKSAVQSAVSK------ERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF- 87
K+ P + + AV+ A K E+R +LRL +H +F
Sbjct: 2 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSA--------------GTFD 47
Query: 88 TGEKTSGP----------NINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAI 137
G KT GP ++ G ++ + ++ P ++S AD +A +V +
Sbjct: 48 KGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEV 106
Query: 138 LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAH 196
GGP GR D G +P T +L + F +A GL+ +D+VALSG H
Sbjct: 107 TGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGH 162
Query: 197 TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYK 256
TIG A + R S E + N P FDN Y+
Sbjct: 163 TIGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFT 191
Query: 257 HLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 192 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 115/293 (39%), Gaps = 72/293 (24%)
Query: 35 KTCPKLLNTVKSAVQSAVSK------ERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF- 87
K+ P + + AV+ A K E+R +LRL +H +F
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSA--------------GTFD 59
Query: 88 TGEKTSGP----------NINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAI 137
G KT GP ++ G ++ + ++ P ++S AD +A +V +
Sbjct: 60 KGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEV 118
Query: 138 LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAH 196
GGP GR D G +P T +L + F +A GL+ +D+VALSG H
Sbjct: 119 TGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGH 174
Query: 197 TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYK 256
TIG A S E + N P FDN Y+
Sbjct: 175 TIGAAHK--------ERSGFEGPWTSN-----------------------PLIFDNSYFT 203
Query: 257 HLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 115/293 (39%), Gaps = 72/293 (24%)
Query: 35 KTCPKLLNTVKSAVQSAVSK------ERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF- 87
K+ P + + AV+ A K E+R +LRL +H +F
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSA--------------GTFD 59
Query: 88 TGEKTSGP----------NINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAI 137
G KT GP ++ G ++ + ++ P ++S AD +A +V +
Sbjct: 60 KGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEV 118
Query: 138 LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAH 196
GGP GR D G +P T +L + F +A GL+ +D+VALSG H
Sbjct: 119 TGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGH 174
Query: 197 TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYK 256
TIG A S E + N P FDN Y+
Sbjct: 175 TIGAAHK--------ERSGFEGPWTSN-----------------------PLIFDNSYFT 203
Query: 257 HLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 117/293 (39%), Gaps = 72/293 (24%)
Query: 35 KTCPKLLNTVKSAVQSAVSK------ERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF- 87
K+ P + + AV+ A K E+R +L+L +H +F
Sbjct: 2 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSA--------------GTFD 47
Query: 88 TGEKTSGP----------NINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAI 137
G KT GP ++ G ++ + ++ P ++S AD +A +V +
Sbjct: 48 KGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEV 106
Query: 138 LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAH 196
GGP GR D G +P T +L + F +A GL+ +D+VALSG H
Sbjct: 107 TGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGH 162
Query: 197 TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYK 256
TIG A + R S E + N P FDN Y+
Sbjct: 163 TIGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFT 191
Query: 257 HLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 192 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 120 VVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF 179
++S AD +A +V + GGP GR D G +P T +L + F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVF 156
Query: 180 -QAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNN 238
+A GL+ +D+VALSG HTIG A S E + N
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGPWTSN--------------- 193
Query: 239 LAPLDFQSPNKFDNQYYKHLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSD 294
P FDN Y+ LL ++GLL SD+ L + LV YA++ F +D
Sbjct: 194 --------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFAD 245
Query: 295 FAAAMIKMGDI 305
+A A K+ ++
Sbjct: 246 YAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 120 VVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF 179
++S AD +A +V + GGP GR D G +P T +L + F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVF 156
Query: 180 -QAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNN 238
+A GL+ +D+VALSG HTIG A S E + N
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGPWTSN--------------- 193
Query: 239 LAPLDFQSPNKFDNQYYKHLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSD 294
P FDN Y+ LL ++GLL SD+ L + LV YA++ F +D
Sbjct: 194 --------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFAD 245
Query: 295 FAAAMIKMGDI 305
+A A K+ ++
Sbjct: 246 YAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 120 VVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF 179
++S AD +A +V + GGP GR D G +P T +L + F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVF 156
Query: 180 -QAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNN 238
+A GL+ +D+VALSG HTIG A + R S E + N
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAH----KER----SGFEGPWTSN--------------- 193
Query: 239 LAPLDFQSPNKFDNQYYKHLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSD 294
P FDN Y+ LL ++GLL SD+ L + LV YA++ F +D
Sbjct: 194 --------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFAD 245
Query: 295 FAAAMIKMGDI 305
+A A K+ ++
Sbjct: 246 YAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 120 VVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF 179
++S AD +A +V + GGP GR D G +P T +L + F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVF 156
Query: 180 -QAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNN 238
+A GL+ +D+VALSG HTIG A S E + N
Sbjct: 157 GKAMGLTDQDIVALSGGHTIGAAHK--------ERSGFEGPWTSN--------------- 193
Query: 239 LAPLDFQSPNKFDNQYYKHLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSD 294
P FDN Y+ LL ++GLL SD+ L + LV YA++ F +D
Sbjct: 194 --------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFAD 245
Query: 295 FAAAMIKMGDI 305
+A A K+ ++
Sbjct: 246 YAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 120 VVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF 179
++S AD +A +V + GGP GR D G +P T +L + F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVF 144
Query: 180 -QAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNN 238
+A GL+ +D+VALSG HTIG A + R S E + N
Sbjct: 145 GKAMGLTDQDIVALSGGHTIGAAH----KER----SGFEGPWTSN--------------- 181
Query: 239 LAPLDFQSPNKFDNQYYKHLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSD 294
P FDN Y+ LL ++GLL SD+ L + LV YA++ F +D
Sbjct: 182 --------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFAD 233
Query: 295 FAAAMIKMGDI 305
+A A K+ ++
Sbjct: 234 YAEAHQKLSEL 244
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 120 VVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF 179
++S AD +A +V + GGP GR D G +P T +L + F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVF 144
Query: 180 -QAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNN 238
+A GL+ +D+VALSG HTIG A + R S E + N
Sbjct: 145 GKAMGLTDQDIVALSGGHTIGAAH----KER----SGFEGPWTSN--------------- 181
Query: 239 LAPLDFQSPNKFDNQYYKHLL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSD 294
P FDN Y+ LL ++GLL SD+ L + LV YA++ F +D
Sbjct: 182 --------PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFAD 233
Query: 295 FAAAMIKMGDI 305
+A A K+ ++
Sbjct: 234 YAEAHQKLSEL 244
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 86/238 (36%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAHT+G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
S E + N PN FDN +Y +LLN+
Sbjct: 183 --------KNSGYEGPWTAN-----------------------PNVFDNSFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VALSGAHT+G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
S E + N N FDN +Y +LLN+
Sbjct: 183 --------KNSGYEGPWTANN-----------------------NVFDNSFYLNLLNEDW 211
Query: 264 LLH-------------------SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAHT+G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
S E + N N FDN +Y +LLN+
Sbjct: 183 --------KNSGYEGPWTANN-----------------------NVFDNSFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 87/238 (36%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAHT+G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y P D + N FDN +Y +LLN+
Sbjct: 183 ---KNSGYE---------------------------GPWD-ATNNVFDNSFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAHT+G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
S E + N N FDN +Y +LLN+
Sbjct: 183 --------KNSGYEGPWTANN-----------------------NVFDNSFYLNLLNEDW 211
Query: 264 LLH-------------------SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 83/233 (35%), Gaps = 47/233 (20%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 V-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNK 249
F N Y N N + KN N + SG
Sbjct: 180 KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------------- 225
Query: 250 FDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
Y HL L+ + L S+V YA++ F DF+ A K+
Sbjct: 226 -----YMHLPTDYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 96/271 (35%), Gaps = 63/271 (23%)
Query: 55 ERRMGASLLRLHFHDCFV----NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIK 110
E++ G L+RL +H + GS T F E N GF+ ++ I
Sbjct: 32 EKKCGPVLVRLAWHTSGTWDKHDNTGGSY--GGTYRFKKEFNDPSNAGLQNGFKFLEPIH 89
Query: 111 SKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTS 170
+ +S D+ ++ +V + GP + GR D T ++G +P
Sbjct: 90 KEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADK 142
Query: 171 TLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPR 230
+ FQ ++ +++VAL GAH +G+ S E F
Sbjct: 143 DADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPFG--------- 185
Query: 231 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG-------------------LLHSDQIL 271
+ N F N++Y +LLN+ +L +D L
Sbjct: 186 --------------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL 231
Query: 272 FNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
S+V YA++ F DF+ A K+
Sbjct: 232 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 87/238 (36%), Gaps = 59/238 (24%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y G G NN+ F N++Y +LLN+
Sbjct: 180 ---KNSGY--------------------EGGGANNV----------FTNEFYLNLLNEDW 206
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 207 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 87/238 (36%), Gaps = 59/238 (24%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 127
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 128 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y G G NN+ F N++Y +LLN+
Sbjct: 186 ---KNSGYE--------------------GGGANNV----------FTNEFYLNLLNEDW 212
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 213 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 87/238 (36%), Gaps = 59/238 (24%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 122
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 123 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 180
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y G G NN+ F N++Y +LLN+
Sbjct: 181 ---KNSGYE--------------------GGGANNV----------FTNEFYLNLLNEDW 207
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 208 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N+YY +LLN+
Sbjct: 180 ------------------KNSGYEGPWGAAN-------------NVFTNEYYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P+ + N F N++Y +LLN+
Sbjct: 180 ------------------KNSGYEGPQGAAN-------------NVFTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P+ + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPQGAAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y G NN+ F N++Y +LLN+
Sbjct: 185 ---KNSGY------------------EGPGGAANNV----------FTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 95/270 (35%), Gaps = 69/270 (25%)
Query: 59 GASLLRLHFH-----DCFVN--GCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKS 111
G L+RL FH D N G G T F E N GF+ ++ I
Sbjct: 45 GPVLVRLAFHISGTWDKHDNTGGSYGG-----TYRFKKEFNDPSNAGLQNGFKFLEPI-- 97
Query: 112 KVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTST 171
K P +S D+ ++ +V + GP + GR D T ++G +P
Sbjct: 98 --HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKD 152
Query: 172 LSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRA 231
+ FQ ++ +++VAL GAH +G+ KN P
Sbjct: 153 AGYVRTFFQRLNMNDREVVALMGAHALGKTHL------------------KNSGYEGPWG 194
Query: 232 TGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG-------------------LLHSDQILF 272
+ N F N++Y +LLN+ +L +D L
Sbjct: 195 AAN-------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 273 NGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
S+V YA++ F DF+ A K+
Sbjct: 242 QDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y G NN+ F N++Y +LLN+
Sbjct: 183 ---KNSGY------------------EGPGGAANNV----------FTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)
Query: 61 SLLRLHFHDCFV----------NGCDGSILLDDTSSFTGEKTSGPNINSARGFE-VVDDI 109
++RL FHD G DGS+LL T PN ++ G + V+++
Sbjct: 39 EVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVNNL 90
Query: 110 KSKVEKVCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPP 168
++K +S AD++ A +++ G P GR + A++ G+IP P
Sbjct: 91 IPFMQKH--NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAV----DGLIPEP 144
Query: 169 TSTLSNLINRFQ-AKGLSAKDMVALSGAHTIGQARCV 204
+++ ++ RF+ A G + ++V+L +H++ +A V
Sbjct: 145 QDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKV 181
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y G NN+ F N++Y +LLN+
Sbjct: 183 ---KNSGY------------------EGPGGAANNV----------FTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y G NN+ F N++Y +LLN+
Sbjct: 180 ---KNSGY------------------EGPGGAANNV----------FTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 122
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 123 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 180
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+N Y G NN+ F N++Y +LLN+
Sbjct: 181 ---KNSGY------------------EGPGGAANNV----------FTNEFYLNLLNEDW 209
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 210 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 27/157 (17%)
Query: 61 SLLRLHFHDCFV----------NGCDGSILLDDTSSFTGEKTSGPNINSARGFE-VVDDI 109
++RL FHD G DGS+LL T PN ++ G + V+++
Sbjct: 39 EVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVNNL 90
Query: 110 KSKVEKVCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPP 168
++K +S AD++ A +++ G P GR + A++ G+IP P
Sbjct: 91 IPFMQKH--NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAV----DGLIPEP 144
Query: 169 TSTLSNLINRFQ-AKGLSAKDMVALSGAHTIGQARCV 204
+++ ++ RF+ A G + ++V+L +H++ +A V
Sbjct: 145 QDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKV 181
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 180 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 27/154 (17%)
Query: 61 SLLRLHFHDCFV----------NGCDGSILLDDTSSFTGEKTSGPNINSARGFE-VVDDI 109
++RL FHD G DGS+LL T PN ++ G + V+++
Sbjct: 39 EVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVNNL 90
Query: 110 KSKVEKVCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPP 168
++K +S AD++ A +++ G P GR + A++ G+IP P
Sbjct: 91 IPFMQKH--NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAV----DGLIPEP 144
Query: 169 TSTLSNLINRFQ-AKGLSAKDMVALSGAHTIGQA 201
+++ ++ RF+ A G + ++V+L +H++ +A
Sbjct: 145 QDSVTKILQRFEDAGGFTPFEVVSLLASHSVARA 178
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTEL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 180 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 180 ------------------KNSGYEGPYGAAN-------------NVFTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 180 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 69 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 123
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 124 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 181
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 182 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 210
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 211 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 69 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 123
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 124 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 181
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
S E F + N F N++Y +LLN+
Sbjct: 182 --------KRSGYEGPFG-----------------------AANNVFTNEFYLNLLNEDW 210
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 211 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 127
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 128 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 186 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 214
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 215 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNENW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 180 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+R G+ + N F N++Y +LLN+
Sbjct: 180 --------------------KRSGYEGPWGAAN-----------NVFTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPWNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 180 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
S E F + N F N++Y +LLN+
Sbjct: 185 --------KNSGYEGPFG-----------------------AANNVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 83/233 (35%), Gaps = 47/233 (20%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 127
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 128 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
Query: 204 V-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNK 249
F N Y N N + KN N + SG
Sbjct: 186 KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------------- 231
Query: 250 FDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
Y L + L+ + L S+V YA++ F DF+ A K+
Sbjct: 232 -----YMMLPTEYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+R G+ + N F N++Y +LLN+
Sbjct: 185 --------------------KRSGYEGPWGAAN-----------NVFTNEFYLNLLNENW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+R G+ + N F N++Y +LLN+
Sbjct: 185 --------------------KRSGYEGPWGAAN-----------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
+R G+ + N F N++Y +LLN+
Sbjct: 183 --------------------KRSGYEGPWGAAN-----------NVFTNEFYLNLLNENW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRAGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPWGCAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRAGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NCFTNEFYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 83/238 (34%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEWQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N++Y +LLN+
Sbjct: 185 ------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLLNEDW 213
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 82/233 (35%), Gaps = 47/233 (20%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 V-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNK 249
F N Y N N + KN N + SG
Sbjct: 183 KRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------------- 228
Query: 250 FDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
Y L L+ + L S+V YA++ F DF+ A K+
Sbjct: 229 -----YMMLPTXYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 82/233 (35%), Gaps = 47/233 (20%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 V-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNK 249
F N Y N N + KN N + SG
Sbjct: 183 KNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------------- 228
Query: 250 FDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
Y L L+ + L S+V YA++ F DF+ A K+
Sbjct: 229 -----YMMLPTNYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 82/233 (35%), Gaps = 47/233 (20%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 127 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 204 V-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNK 249
F N Y N N + KN N + SG
Sbjct: 185 KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------------- 230
Query: 250 FDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
Y L L+ + L S+V YA++ F DF+ A K+
Sbjct: 231 -----YMMLPTNYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 82/233 (35%), Gaps = 47/233 (20%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 127
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 128 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
Query: 204 V-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNK 249
F N Y N N + KN N + SG
Sbjct: 186 KNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------------- 231
Query: 250 FDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
Y L L+ + L S+V YA++ F DF+ A K+
Sbjct: 232 -----YMMLPTAYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 83/238 (34%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 122 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N+ Y +LLN+
Sbjct: 180 ------------------KNSGYEGPWGAAN-------------NVFTNEKYLNLLNEDW 208
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 83/238 (34%), Gaps = 57/238 (23%)
Query: 84 TSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSW 143
T F E N GF+ ++ I K P +S D+ ++ +V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 NVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARC 203
+ GR D T ++G +P + FQ ++ +++VAL GAH +G+
Sbjct: 125 PWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
Query: 204 VAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 263
KN P + N F N+ Y +LLN+
Sbjct: 183 ------------------KNSGYEGPWGAAN-------------NVFTNEGYLNLLNEDW 211
Query: 264 -------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+L +D L S+V YA++ F DF+ A K+
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 98/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
++ +N + FAA M KM
Sbjct: 244 WQSFVNNQPKIQNRFAATMSKM 265
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 98/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V+L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVSLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPQDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVYLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAAAKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPQVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPGPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPGPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 97/262 (37%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPGPFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 50/159 (31%)
Query: 164 VIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKN 223
+IP P +T++ +++RF G S ++V L AH++ ++ + S+ +
Sbjct: 151 LIPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSLA------------SQEGLNSAIFR- 197
Query: 224 RRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL----NQKGL--------------- 264
+PLD +P FD Q+Y L Q G
Sbjct: 198 ----------------SPLD-STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGGF 240
Query: 265 -LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+ SD +L T + S+++ F AAM KM
Sbjct: 241 RIRSDALLARDSRTACRWQSMTSSNEVMGQRFRAAMAKM 279
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 96/262 (36%), Gaps = 60/262 (22%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEK 115
LRL FHD G DGSI+ DT +G + E+V K V K
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFVAK 94
Query: 116 VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSN 174
+S D + A V+ GG LGR D+ +AA+ ++P ++ +
Sbjct: 95 ---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEGFDSVDS 147
Query: 175 LINRFQAKGLSAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSF 220
++ R G S ++V L +H+I A V F ++ + E+ ++
Sbjct: 148 ILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRL 207
Query: 221 AKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280
G+ DN + QSP L + L SD +L T
Sbjct: 208 FP----------GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACE 243
Query: 281 VSTYASNSKTFNSDFAAAMIKM 302
+ +N + FAA M KM
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKM 265
>pdb|1Q9J|A Chain A, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
pdb|1Q9J|B Chain B, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
Length = 422
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 57 RMGASLLRLHFHDCFVNGCDGSILLDDT-SSFTGEKTSG 94
R G + L L+ H C +G G++L+D+ S +T T+G
Sbjct: 112 REGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTG 150
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 41/158 (25%)
Query: 139 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTI 198
GGP GR + S G++P PT + ++ R G S ++V L +H+I
Sbjct: 123 GGPRLQFLAGRSNISQPS----PDGLVPDPTDSADKILARMADIGFSPTEVVHLLASHSI 178
Query: 199 GQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 258
+ +++ A + P D +P+ FD Q++
Sbjct: 179 AA------------QYEVDTDVAGS-----------------PFD-STPSVFDTQFFV-- 206
Query: 259 LNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 296
+ LLH Q F G V + SDFA
Sbjct: 207 ---ESLLHGTQ--FTGSGQGGEVMSPIPGEFRLQSDFA 239
>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
Length = 351
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 104 EVVDDIKSKVEK--VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAA 160
E+V K V+K V PG D +A A +++ G P N GR + A
Sbjct: 96 EIVKLQKPFVQKHGVTPG-----DFIAFAGAVALSNCPGAPQMNFFTGR----APATQPA 146
Query: 161 NSGVIPPPTSTLSNLINRFQAKG-LSAKDMVALSGAHTI 198
G++P P T+ +INR G ++V + AH++
Sbjct: 147 PDGLVPEPFHTVDQIINRVNDAGEFDELELVXMLSAHSV 185
>pdb|1B82|A Chain A, Pristine Recomb. Lignin Peroxidase H8
pdb|1B82|B Chain B, Pristine Recomb. Lignin Peroxidase H8
Length = 351
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 104 EVVDDIKSKVEK--VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAA 160
E+V K V+K V PG D +A A +++ G P N GR + A
Sbjct: 96 EIVKLQKPFVQKHGVTPG-----DFIAFAGAVALSNCPGAPQMNFFTGR----APATQPA 146
Query: 161 NSGVIPPPTSTLSNLINRFQAKG-LSAKDMVALSGAHTI 198
G++P P T+ +INR G ++V + AH++
Sbjct: 147 PDGLVPEPFHTVDQIINRVNDAGEFDELELVWMLSAHSV 185
>pdb|2R6G|G Chain G, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|3FH6|G Chain G, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|I Chain I, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|G Chain G, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|G Chain G, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|G Chain G, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|G Chain G, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|G Chain G, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|G Chain G, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|G Chain G, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 296
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 143 WNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS 193
W + LG S+ A+ + PPP L L N + G+SA +VALS
Sbjct: 59 WKLALGF------SVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVALS 103
>pdb|1B85|A Chain A, Lignin Peroxidase
pdb|1B85|B Chain B, Lignin Peroxidase
Length = 351
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 104 EVVDDIKSKVEK--VCPGVVSCADILAIAARHSVA-ILGGPSWNVKLGRRDSKTASLAAA 160
E+V K V+K V PG D +A A +++ G P N GR + A
Sbjct: 96 EIVKLQKPFVQKHGVTPG-----DFIAFAGAVALSNCPGAPQMNFFTGR----APATQPA 146
Query: 161 NSGVIPPPTSTLSNLINRFQAKG-LSAKDMVALSGAHTI 198
G++P P T+ +INR G ++V + AH++
Sbjct: 147 PDGLVPEPFHTVDQIINRVNDAGEFDELELVFMLSAHSV 185
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 50/159 (31%)
Query: 164 VIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKN 223
+IP P +T++ +++R G S ++V L AH++ ++ + S+ +
Sbjct: 151 LIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLA------------SQEGLNSAIFR- 197
Query: 224 RRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL----NQKGL--------------- 264
+PLD +P FD Q+Y L Q G
Sbjct: 198 ----------------SPLD-STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEF 240
Query: 265 -LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+ SD +L T + S+++ + AAM KM
Sbjct: 241 RMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKM 279
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 50/159 (31%)
Query: 164 VIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKN 223
+IP P +T++ +++R G S ++V L AH++ ++ + S+ +
Sbjct: 152 LIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLA------------SQEGLNSAIFR- 198
Query: 224 RRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL----NQKGL--------------- 264
+PLD +P FD Q+Y L Q G
Sbjct: 199 ----------------SPLD-STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEF 241
Query: 265 -LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+ SD +L T + S+++ + AAM KM
Sbjct: 242 RMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKM 280
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 50/159 (31%)
Query: 164 VIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKN 223
+IP P +T++ +++R G S ++V L AH++ ++ + S+ +
Sbjct: 151 LIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLA------------SQEGLNSAIFR- 197
Query: 224 RRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL----NQKGL--------------- 264
+PLD +P FD Q+Y L Q G
Sbjct: 198 ----------------SPLD-STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEF 240
Query: 265 -LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 302
+ SD +L T + S+++ + AAM KM
Sbjct: 241 RMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKM 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,908,974
Number of Sequences: 62578
Number of extensions: 350770
Number of successful extensions: 949
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 207
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)