Query 020615
Match_columns 323
No_of_seqs 197 out of 1505
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-104 2E-109 756.7 25.1 292 24-323 21-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.9E-98 4E-103 711.8 24.4 291 27-322 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.7E-71 3.7E-76 510.9 10.0 226 44-287 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 6E-69 1.3E-73 505.0 20.3 230 42-319 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 4.4E-66 9.6E-71 480.3 18.8 229 39-308 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.5E-64 3.3E-69 468.6 18.2 231 31-308 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 1.1E-63 2.3E-68 477.2 20.5 236 40-323 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 4.2E-63 9.1E-68 458.3 19.1 218 43-308 19-248 (251)
9 cd00314 plant_peroxidase_like 100.0 3.6E-59 7.7E-64 434.9 16.5 224 43-304 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 4.2E-57 9.1E-62 438.4 19.4 260 42-313 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 4E-54 8.7E-59 441.2 20.1 256 42-309 55-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.4E-50 3E-55 413.1 19.7 256 42-310 57-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.4E-50 3.1E-55 374.6 13.1 212 51-304 34-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 3.9E-41 8.5E-46 315.3 16.0 222 46-306 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.4E-35 3.1E-40 304.7 15.7 220 43-306 429-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 4.2E-35 9.2E-40 299.7 16.7 222 46-306 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 6.2E-31 1.3E-35 258.5 16.4 249 43-305 71-415 (730)
18 COG0376 KatG Catalase (peroxid 99.5 3E-14 6.6E-19 141.4 11.8 217 47-306 453-725 (730)
19 PTZ00411 transaldolase-like pr 80.1 8.4 0.00018 37.8 8.2 133 137-294 179-325 (333)
20 cd00957 Transaldolase_TalAB Tr 64.7 17 0.00037 35.4 6.1 77 102-187 137-219 (313)
21 TIGR00874 talAB transaldolase. 64.0 24 0.00053 34.3 7.1 132 135-292 165-310 (317)
22 PRK12346 transaldolase A; Prov 60.3 23 0.0005 34.5 6.2 89 120-226 149-253 (316)
23 PRK12309 transaldolase/EF-hand 58.7 65 0.0014 32.3 9.2 101 101-226 142-258 (391)
24 PF11895 DUF3415: Domain of un 54.8 11 0.00023 29.4 2.3 19 290-308 2-20 (80)
25 PRK05269 transaldolase B; Prov 50.7 54 0.0012 32.0 7.0 50 137-187 169-221 (318)
26 PLN00017 photosystem I reactio 23.5 42 0.00092 26.4 1.1 19 284-302 38-56 (90)
27 KOG0400 40S ribosomal protein 21.6 53 0.0011 28.1 1.4 33 170-202 31-64 (151)
28 cd00439 Transaldolase Transald 21.5 58 0.0013 30.5 1.8 78 101-187 127-210 (252)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1e-104 Score=756.73 Aligned_cols=292 Identities=42% Similarity=0.758 Sum_probs=277.8
Q ss_pred CccccCccccccCCccHHHHHHHHHHHHHHhccccccchhhhhhcccccccCCcceeccCCCCCCCcCCCCCCCCCcchh
Q 020615 24 SSAQLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSARGF 103 (323)
Q Consensus 24 ~~~~l~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~aa~llRl~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~~lrg~ 103 (323)
+.++|+++||++|||++|+||+++|++.+.++|+++|++|||+||||||+||||||||+++. +||++++|. ++|||
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~---~Ek~a~~N~-~l~Gf 96 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSN---TEKTALPNL-LLRGY 96 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCc---ccccCCCCc-CcchH
Confidence 45679999999999999999999999999999999999999999999999999999998653 699999998 89999
Q ss_pred hHHHHHHHHhhhhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHHCC
Q 020615 104 EVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKG 183 (323)
Q Consensus 104 ~~Id~iK~~le~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~~G 183 (323)
++|+.||+++|++||++|||||||||||||||+++|||.|+|++||||+++|.+..+. + ||.|+.++++|++.|+++|
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~-LP~p~~~~~~l~~~F~~~G 174 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-N-LPGFTDSIDVQKQKFAAKG 174 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-C-CcCCCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999877764 7 9999999999999999999
Q ss_pred CCcccchhhccCccccccccccccccccC--------CCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHH
Q 020615 184 LSAKDMVALSGAHTIGQARCVAFRNRIYN--------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 255 (323)
Q Consensus 184 l~~~dlVaLsGaHTiG~~hc~~f~~rl~~--------dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy 255 (323)
|+.+|||+||||||||++||.+|.+|||| ||+||+.|+.+|++.||..++ ..+.+++|+.||.+|||+||
T Consensus 175 l~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~--~~~~~~lD~~Tp~~FDn~Yy 252 (324)
T PLN03030 175 LNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGD--GSRRIALDTGSSNRFDASFF 252 (324)
T ss_pred CCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCC--CCccccCCCCCCcccccHHH
Confidence 99999999999999999999999999995 899999999999999996322 33467899999999999999
Q ss_pred HHHHhcCCccccccccccCcchHHHHHhhccCc----hhHHHHHHHHHHHhhcCCCCCCCCCcccCCCCCCC
Q 020615 256 KHLLNQKGLLHSDQILFNGGSTDSLVSTYASNS----KTFNSDFAAAMIKMGDISPLTGSIGEIRKNCRRPN 323 (323)
Q Consensus 256 ~~l~~~~gll~SD~~L~~d~~t~~~V~~~A~d~----~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~n 323 (323)
++|+.++|+|+|||+|+.|++|+++|++||.|+ +.||++|++||+|||+|+|+||++|||||+|+++|
T Consensus 253 ~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 253 SNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 999999999999999999999999999999885 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.9e-98 Score=711.76 Aligned_cols=291 Identities=54% Similarity=0.940 Sum_probs=279.6
Q ss_pred ccCccccccCCccHHHHHHHHHHHHHHhccccccchhhhhhcccccccCCcceeccCCCCCCCcCCCCCCCCCcchhhHH
Q 020615 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSARGFEVV 106 (323)
Q Consensus 27 ~l~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~aa~llRl~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~~lrg~~~I 106 (323)
||+++||+++||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.++.+|+++++|. +++||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 69999999999999999999999999999999999999999999999999999999887778899999998 89999999
Q ss_pred HHHHHHhhhhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHHCCCCc
Q 020615 107 DDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSA 186 (323)
Q Consensus 107 d~iK~~le~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~ 186 (323)
+.||+++|+.||++||||||||||||+||+++|||.|+|++||+|+.++.+..+ ++ ||+|+.+++++++.|+++||++
T Consensus 80 ~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~-lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GN-LPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cC-CCCcccCHHHHHHHHHHcCCCH
Confidence 999999999999999999999999999999999999999999999998877665 66 9999999999999999999999
Q ss_pred ccchhhccCccccccccccccccccC-------CCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHH
Q 020615 187 KDMVALSGAHTIGQARCVAFRNRIYN-------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL 259 (323)
Q Consensus 187 ~dlVaLsGaHTiG~~hc~~f~~rl~~-------dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~ 259 (323)
+|||+|+||||||++||.+|.+|+|| ||+||+.|+..|++.||..++ +.+.+++|+.||.+|||+||++|+
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~--~~~~~~lD~~Tp~~FDn~Yy~~l~ 235 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGD--DDTLVPLDPGTPNTFDNSYYKNLL 235 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCC--CCccccCCCCCCCccccHHHHHHH
Confidence 99999999999999999999999984 899999999999999997543 456789999999999999999999
Q ss_pred hcCCccccccccccCcchHHHHHhhccCchhHHHHHHHHHHHhhcCCCCCCCCCcccCCCCCC
Q 020615 260 NQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNCRRP 322 (323)
Q Consensus 260 ~~~gll~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~ 322 (323)
.++|+|+|||+|+.|++|+++|++||.||+.|+++|++||+||++++|+||.+|||||+|+++
T Consensus 236 ~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 236 AGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred hcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.7e-71 Score=510.89 Aligned_cols=226 Identities=53% Similarity=0.918 Sum_probs=207.7
Q ss_pred HHHHHHHHHHhccccccchhhhhhccccc-ccCCcceeccCCCCCCCcCCCCCCCCCcc-hhhHHHHHHHHhhhhCCCCC
Q 020615 44 VKSAVQSAVSKERRMGASLLRLHFHDCFV-NGCDGSILLDDTSSFTGEKTSGPNINSAR-GFEVVDDIKSKVEKVCPGVV 121 (323)
Q Consensus 44 V~~~v~~~~~~~~~~aa~llRl~FHDcfv-~GcDgSill~~~~~~~~E~~~~~N~~~lr-g~~~Id~iK~~le~~cp~~V 121 (323)
||++|++.+.++++++|+||||+|||||+ +|||||||+. .+|+++++|. +++ |+++|+.||+++|.+||++|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----cccccccccc-CcceeeechhhHHhhhcccccCCC
Confidence 79999999999999999999999999999 9999999982 4699999999 777 99999999999999999999
Q ss_pred CHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhhccCcccccc
Q 020615 122 SCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQA 201 (323)
Q Consensus 122 ScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~~ 201 (323)
||||||+||||+||+.+|||.|+|++||+|++++++.++ .+ ||.|..++++|++.|+++|||++|||||+||||||++
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~-lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~ 152 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SN-LPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRA 152 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HH-SSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEE
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccc-cc-ccccccccchhhhhhhccccchhhhcceecccccccc
Confidence 999999999999999999999999999999999999877 66 9999999999999999999999999999999999999
Q ss_pred ccccccccccC--CCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHHhcCCccccccccccCcchHH
Q 020615 202 RCVAFRNRIYN--ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDS 279 (323)
Q Consensus 202 hc~~f~~rl~~--dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~gll~SD~~L~~d~~t~~ 279 (323)
||.+|. |+|. ||+||+.|+.+ .| .+++ .+.+++| ||.+|||+||++|++++|+|.||++|+.|++|++
T Consensus 153 ~c~~f~-rl~~~~dp~~d~~~~~~---~C-~~~~---~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~ 222 (230)
T PF00141_consen 153 HCSSFS-RLYFPPDPTMDPGYAGQ---NC-NSGG---DNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRP 222 (230)
T ss_dssp SGGCTG-GTSCSSGTTSTHHHHHH---SS-STSG---CTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHH
T ss_pred eecccc-cccccccccccccccee---cc-CCCc---ccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHH
Confidence 999999 9995 89999999988 99 4433 3377898 9999999999999999999999999999999999
Q ss_pred HHHhhccC
Q 020615 280 LVSTYASN 287 (323)
Q Consensus 280 ~V~~~A~d 287 (323)
+|++||+|
T Consensus 223 ~V~~yA~d 230 (230)
T PF00141_consen 223 IVERYAQD 230 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999976
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=6e-69 Score=505.02 Aligned_cols=230 Identities=30% Similarity=0.485 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhcccc-------cccCCcceeccCCCCCCCcCCCCCCCCCc-chhhHHHHHHHHh
Q 020615 42 NTVKSAVQSAVSKERRMGASLLRLHFHDCF-------VNGCDGSILLDDTSSFTGEKTSGPNINSA-RGFEVVDDIKSKV 113 (323)
Q Consensus 42 ~iV~~~v~~~~~~~~~~aa~llRl~FHDcf-------v~GcDgSill~~~~~~~~E~~~~~N~~~l-rg~~~Id~iK~~l 113 (323)
+.+++++++ +.++|.++|.+|||+||||| ++||||||++. +|+++++|. ++ +|+++|+.||+++
T Consensus 15 ~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~-gL~~g~~vid~iK~~~ 86 (289)
T PLN02608 15 EKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANN-GLKIAIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCcccc-chHHHHHHHHHHHHHc
Confidence 456667744 66799999999999999999 89999999983 599999998 77 6999999999987
Q ss_pred hhhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhhc
Q 020615 114 EKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS 193 (323)
Q Consensus 114 e~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs 193 (323)
++|||||||+||||+||+.+|||.|+|++||+|++++++ +++ ||+|+.+++++++.|+++|||++|||+|+
T Consensus 87 -----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~-LP~p~~~~~~l~~~F~~~Gl~~~D~VaLs 157 (289)
T PLN02608 87 -----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGR-LPDAKKGAKHLRDVFYRMGLSDKDIVALS 157 (289)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCC-CcCCCCCHHHHHHHHHHcCCCHHHHhhhc
Confidence 389999999999999999999999999999999999864 346 99999999999999999999999999999
Q ss_pred cCccccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHHhc--CCc--ccccc
Q 020615 194 GAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQ--KGL--LHSDQ 269 (323)
Q Consensus 194 GaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~--~gl--l~SD~ 269 (323)
||||||++||. |+ + | . + +++ .||.+|||+||++|+.+ +|+ |+||+
T Consensus 158 GAHTiG~ahc~----r~-g-------~----------~-g-------~~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~ 206 (289)
T PLN02608 158 GGHTLGRAHPE----RS-G-------F----------D-G-------PWT-KEPLKFDNSYFVELLKGESEGLLKLPTDK 206 (289)
T ss_pred ccccccccccc----CC-C-------C----------C-C-------CCC-CCCCccChHHHHHHHcCCcCCccccccCH
Confidence 99999999994 33 0 0 0 1 344 79999999999999998 788 79999
Q ss_pred ccccCcchHHHHHhhccCchhHHHHHHHHHHHhhcCCCCCCCCCcccCCC
Q 020615 270 ILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNC 319 (323)
Q Consensus 270 ~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C 319 (323)
+|+.|++|+++|+.||.||+.|+++|++||+||++++|+||++||+.+.-
T Consensus 207 ~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 207 ALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred hhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.4e-66 Score=480.29 Aligned_cols=229 Identities=28% Similarity=0.457 Sum_probs=206.2
Q ss_pred cHHHHHHHHHHHHHHhccccccchhhhhhcccccccCCcceeccC---CCCCCCcCCCCCCCCCc-chhhHHHHHHHHhh
Q 020615 39 KLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDD---TSSFTGEKTSGPNINSA-RGFEVVDDIKSKVE 114 (323)
Q Consensus 39 ~~e~iV~~~v~~~~~~~~~~aa~llRl~FHDcfv~GcDgSill~~---~~~~~~E~~~~~N~~~l-rg~~~Id~iK~~le 114 (323)
..++||+++|++.++ +++++|++|||+|||||+ ||+|+++++ +..+.+|+++++|. ++ +||++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~-~L~~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANA-GLDIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCcccc-chHHHHHHHHHHHHHc-
Confidence 457899999999999 999999999999999994 777776643 22345799999998 56 8999999999987
Q ss_pred hhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhhcc
Q 020615 115 KVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSG 194 (323)
Q Consensus 115 ~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 194 (323)
| +|||||||+||||+||+.+|||.|+|++||+|+.++....++.+ ||.|+.+++++++.|+++|||++|||+|+|
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~-lP~p~~~~~~l~~~F~~~Gls~~d~VaLsG 160 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGR-LPDASKGADHLRDVFYRMGFNDQEIVALSG 160 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccC-CCCCCCCHHHHHHHHHhcCCCHHHHHHhcc
Confidence 4 89999999999999999999999999999999999987777777 999999999999999999999999999999
Q ss_pred CccccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHHhcCC--------ccc
Q 020615 195 AHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG--------LLH 266 (323)
Q Consensus 195 aHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~g--------ll~ 266 (323)
|||||++||..+ . | . + ++ ..||.+|||+||++|+.++| +|+
T Consensus 161 aHTiG~a~c~~~--~-~-------------------~-g-------~~-~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~ 209 (253)
T cd00691 161 AHTLGRCHKERS--G-Y-------------------D-G-------PW-TKNPLKFDNSYFKELLEEDWKLPTPGLLMLP 209 (253)
T ss_pred cceeecccccCC--C-C-------------------C-C-------CC-CCCCCcccHHHHHHHhcCCCccCcCcceech
Confidence 999999999531 0 0 0 1 22 26999999999999999999 999
Q ss_pred cccccccCcchHHHHHhhccCchhHHHHHHHHHHHhhcCCCC
Q 020615 267 SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPL 308 (323)
Q Consensus 267 SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~igv~ 308 (323)
||++|+.|++|+++|+.||+|+++|+++|++||+||+++||.
T Consensus 210 sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 210 TDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred hhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999985
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.5e-64 Score=468.58 Aligned_cols=231 Identities=30% Similarity=0.514 Sum_probs=205.3
Q ss_pred cccccC--CccHHHHHHHHHHHHHHhccccccchhhhhhc-----ccccc--cCCcceeccCCCCCCCcCCCCCCCCCcc
Q 020615 31 NFYSKT--CPKLLNTVKSAVQSAVSKERRMGASLLRLHFH-----DCFVN--GCDGSILLDDTSSFTGEKTSGPNINSAR 101 (323)
Q Consensus 31 ~fY~~s--CP~~e~iV~~~v~~~~~~~~~~aa~llRl~FH-----Dcfv~--GcDgSill~~~~~~~~E~~~~~N~~~lr 101 (323)
+||... |+.+++.++..+++.+ .+++++|.||||+|| ||+++ ||||||.+ .+|+++++|.+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHH
Confidence 566644 8888899999999987 789999999999999 88876 99999954 46999999984338
Q ss_pred hhhHHHHHHHHhhhhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHH
Q 020615 102 GFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQA 181 (323)
Q Consensus 102 g~~~Id~iK~~le~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~ 181 (323)
||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+ +++ ||.|+.++++|++.|++
T Consensus 77 ~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~-lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 77 ALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGR-LPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCC-CCCCCcCHHHHHHHHHH
Confidence 999999999998 389999999999999999999999999999999999875 345 99999999999999997
Q ss_pred -CCCCcccchhhccCccccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHHh
Q 020615 182 -KGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLN 260 (323)
Q Consensus 182 -~Gl~~~dlVaLsGaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~ 260 (323)
+|||++|||+|+||||||++|| +|+. + . + +++ .||.+|||+||++|+.
T Consensus 148 ~~Gl~~~d~VaLsGaHTiG~~hc----~r~~----~--------------~-g-------~~~-~tp~~fDn~Yy~~ll~ 196 (250)
T PLN02364 148 QMGLSDKDIVALSGAHTLGRCHK----DRSG----F--------------E-G-------AWT-SNPLIFDNSYFKELLS 196 (250)
T ss_pred hcCCCHHHheeeecceeeccccC----CCCC----C--------------C-C-------CCC-CCCCccchHHHHHHhc
Confidence 6999999999999999999999 3320 0 0 1 343 7999999999999999
Q ss_pred c--CCccc--cccccccCcchHHHHHhhccCchhHHHHHHHHHHHhhcCCCC
Q 020615 261 Q--KGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPL 308 (323)
Q Consensus 261 ~--~gll~--SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~igv~ 308 (323)
+ +|+|. ||+.|+.|++|+.+|+.||.||++|+++|++||+||+++|+-
T Consensus 197 ~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 197 GEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred CCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 8 89865 999999999999999999999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.1e-63 Score=477.19 Aligned_cols=236 Identities=28% Similarity=0.439 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHhccc---cccchhhhhhccccc------------ccCCcceeccCCCCCCCcCCCCCCCCCcchhh
Q 020615 40 LLNTVKSAVQSAVSKERR---MGASLLRLHFHDCFV------------NGCDGSILLDDTSSFTGEKTSGPNINSARGFE 104 (323)
Q Consensus 40 ~e~iV~~~v~~~~~~~~~---~aa~llRl~FHDcfv------------~GcDgSill~~~~~~~~E~~~~~N~~~lrg~~ 104 (323)
+|..|+++|++.+..+.. .++.+|||+||||++ +||||||||+++ .|+++++|. +++ +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--H
Confidence 478999999999975544 567799999999996 899999999753 599999998 676 8
Q ss_pred HHHHHHHHhhhhCCCCCCHHHHHHHhhhhHHhh-cCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHHCC
Q 020615 105 VVDDIKSKVEKVCPGVVSCADILAIAARHSVAI-LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKG 183 (323)
Q Consensus 105 ~Id~iK~~le~~cp~~VScADiialAar~Av~~-~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~~G 183 (323)
+|+.||..+|+.| ||||||||||||+||+. .|||.|+|++||+|++++.+. ++ ||.|+.++++|++.|+++|
T Consensus 89 vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~---g~-LP~p~~sv~~l~~~F~~~G 161 (328)
T cd00692 89 IVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD---GL-VPEPFDSVDKILARFADAG 161 (328)
T ss_pred HHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc---cC-CCCCCCCHHHHHHHHHHcC
Confidence 9999999999998 99999999999999995 699999999999999998754 45 9999999999999999999
Q ss_pred CCcccchhhccCccccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHH-hcC
Q 020615 184 LSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL-NQK 262 (323)
Q Consensus 184 l~~~dlVaLsGaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~-~~~ 262 (323)
|+++|||+|+||||||++|. + ||+++ + ++|| .||.+|||+||+|++ .++
T Consensus 162 f~~~E~VaLsGAHTiG~a~~------~--Dps~~---------------g------~p~D-~TP~~FDn~Yf~~ll~~~~ 211 (328)
T cd00692 162 FSPDELVALLAAHSVAAQDF------V--DPSIA---------------G------TPFD-STPGVFDTQFFIETLLKGT 211 (328)
T ss_pred CCHHHHhhhcccccccccCC------C--CCCCC---------------C------CCCC-CCcchhcHHHHHHHHHcCC
Confidence 99999999999999999982 1 56654 1 3788 699999999999987 455
Q ss_pred C-------------------ccccccccccCcchHHHHHhhccCchhHHHHHHHHHHHhhcCCCCCCCCCcccCCCCCCC
Q 020615 263 G-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNCRRPN 323 (323)
Q Consensus 263 g-------------------ll~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~n 323 (323)
+ +|+||++|+.|++|+.+|++||+||++|+++|++||+||+++||. ...+.+|+.|+
T Consensus 212 ~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~ 287 (328)
T cd00692 212 AFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVI 287 (328)
T ss_pred CCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccC
Confidence 5 499999999999999999999999999999999999999999986 44788999875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4.2e-63 Score=458.31 Aligned_cols=218 Identities=29% Similarity=0.453 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHhccccccchhhhhhcccc-------cccCCcceeccCCCCCCCcCCCCCCCCCcc-hhhHHHHHHHHhh
Q 020615 43 TVKSAVQSAVSKERRMGASLLRLHFHDCF-------VNGCDGSILLDDTSSFTGEKTSGPNINSAR-GFEVVDDIKSKVE 114 (323)
Q Consensus 43 iV~~~v~~~~~~~~~~aa~llRl~FHDcf-------v~GcDgSill~~~~~~~~E~~~~~N~~~lr-g~~~Id~iK~~le 114 (323)
-++..+.+.+ .+..++|.+|||+||||. .|||||||++. +|+++++|. +++ ++++|+.||+++
T Consensus 19 ~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~-gL~~~~~~i~~iK~~~- 89 (251)
T PLN02879 19 RCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANN-GLDIAVRLLDPIKELF- 89 (251)
T ss_pred HHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcC-ChHHHHHHHHHHHHHc-
Confidence 3466677766 467899999999999996 48999999863 599999999 666 999999999998
Q ss_pred hhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhhcc
Q 020615 115 KVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSG 194 (323)
Q Consensus 115 ~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 194 (323)
++|||||||+||||+||+.+|||.|+|++||+|+.++.+ +++ ||.|+.++++|++.|+++||+++|||||+|
T Consensus 90 ----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~-lP~p~~~~~~l~~~F~~~Gl~~~dlVALsG 161 (251)
T PLN02879 90 ----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGR-LPQATKGVDHLRDVFGRMGLNDKDIVALSG 161 (251)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccC-CCCCCCCHHHHHHHHHHcCCCHHHHeeeec
Confidence 389999999999999999999999999999999998864 356 999999999999999999999999999999
Q ss_pred CccccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHHhc--CCc--cccccc
Q 020615 195 AHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQ--KGL--LHSDQI 270 (323)
Q Consensus 195 aHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~--~gl--l~SD~~ 270 (323)
|||||++||. |. + .. ..|| .||.+|||+||++|+.+ +|+ |+||++
T Consensus 162 aHTiG~ah~~----r~----------------------g--~~--g~~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~a 210 (251)
T PLN02879 162 GHTLGRCHKE----RS----------------------G--FE--GAWT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKA 210 (251)
T ss_pred cccccccccc----cc----------------------c--CC--CCCC-CCccceeHHHHHHHHcCCcCCCccchhhHH
Confidence 9999999994 21 1 01 1366 79999999999999998 888 679999
Q ss_pred cccCcchHHHHHhhccCchhHHHHHHHHHHHhhcCCCC
Q 020615 271 LFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPL 308 (323)
Q Consensus 271 L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~igv~ 308 (323)
|+.||+|+++|++||+||++||++|++||+||++||+.
T Consensus 211 L~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 211 LLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999985
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3.6e-59 Score=434.92 Aligned_cols=224 Identities=35% Similarity=0.523 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHhccccccchhhhhhcccccc--------cCCcceeccCCCCCCCcCCCCCCCCCcchhhHHHHHHHHhh
Q 020615 43 TVKSAVQSAVSKERRMGASLLRLHFHDCFVN--------GCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVE 114 (323)
Q Consensus 43 iV~~~v~~~~~~~~~~aa~llRl~FHDcfv~--------GcDgSill~~~~~~~~E~~~~~N~~~lrg~~~Id~iK~~le 114 (323)
.|+..|++.+.+++.+++.+|||+||||++. ||||||++++ |+++++|.++.+++++|+.||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcC
Confidence 4788899999999999999999999999986 9999999963 9999999855699999999999999
Q ss_pred hhCCCCCCHHHHHHHhhhhHHhhc--CCCccccccCCCCCCCcc--ccccCCCCCCCCCCCHHHHHHHHHHCCCCcccch
Q 020615 115 KVCPGVVSCADILAIAARHSVAIL--GGPSWNVKLGRRDSKTAS--LAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMV 190 (323)
Q Consensus 115 ~~cp~~VScADiialAar~Av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlV 190 (323)
. |++|||||||++|+++||+.+ |||.|+|++||+|+..+. ...+..+ +|.|..+++++++.|+++||+++|||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~-~p~~~~~~~~~~~~F~~~Gl~~~e~V 152 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGL-LPNETSSATELRDKFKRMGLSPSELV 152 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCC-CCCccchHHHHHHHHHHcCCCHHHHH
Confidence 8 889999999999999999999 999999999999999764 3334455 88888899999999999999999999
Q ss_pred hhc-cCccc-cccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHHhcC------
Q 020615 191 ALS-GAHTI-GQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQK------ 262 (323)
Q Consensus 191 aLs-GaHTi-G~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~------ 262 (323)
||+ ||||| |++||..+..|+ | .+|+.||.+|||+||++++.++
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~-----------------~------------~~~~~tp~~fDN~yy~~l~~~~~~~~~~ 203 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG-----------------S------------GLWTSTPFTFDNAYFKNLLDMNWEWRVG 203 (255)
T ss_pred hhccCCeeccCcccCCCCCccc-----------------C------------CCCCCCCCccchHHHHHHhcCCcccccC
Confidence 999 99999 999998876553 1 1235899999999999999988
Q ss_pred ----------CccccccccccCcchHHHHHhhccCchhHHHHHHHHHHHhhc
Q 020615 263 ----------GLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGD 304 (323)
Q Consensus 263 ----------gll~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~ 304 (323)
++|+||++|+.|++|+.+|++||.|++.|+++|++||+||++
T Consensus 204 ~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 204 SPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999974
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=4.2e-57 Score=438.36 Aligned_cols=260 Identities=20% Similarity=0.337 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHhc--------cccccchhhhhhccccc-------ccCC-cceeccCCCCCCCcCCCCCCCCCcchhhH
Q 020615 42 NTVKSAVQSAVSKE--------RRMGASLLRLHFHDCFV-------NGCD-GSILLDDTSSFTGEKTSGPNINSARGFEV 105 (323)
Q Consensus 42 ~iV~~~v~~~~~~~--------~~~aa~llRl~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~N~~~lrg~~~ 105 (323)
+.|++.|++.+... ..++|.+|||+|||+.+ ||++ |+|++. +|++++.|.++.++..+
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~~ 118 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARRL 118 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHHH
Confidence 67899999998764 47999999999999985 8997 778764 69999999966678899
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCcccc---------------------------
Q 020615 106 VDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLA--------------------------- 158 (323)
Q Consensus 106 Id~iK~~le~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~--------------------------- 158 (323)
++.||+++. ..||+||+|+||+.+||+.+|||.|+|.+||.|...+...
T Consensus 119 L~pik~k~~----~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a 194 (409)
T cd00649 119 LWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAA 194 (409)
T ss_pred HHHHHHHcC----CCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhh
Confidence 999999875 3799999999999999999999999999999999764320
Q ss_pred ----------ccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhh-ccCccccccccccccccccCCCccChHHHHHhh--
Q 020615 159 ----------AANSGVIPPPTSTLSNLINRFQAKGLSAKDMVAL-SGAHTIGQARCVAFRNRIYNESNIESSFAKNRR-- 225 (323)
Q Consensus 159 ----------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~-- 225 (323)
+.... ||+|..++.+|++.|.+||||++||||| +||||||++||..|.+||+.||.+++.|+..|+
T Consensus 195 ~~mgliyv~Pegp~g-LPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~ 273 (409)
T cd00649 195 VQMGLIYVNPEGPDG-NPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWK 273 (409)
T ss_pred hhccccccCCCCCCC-CCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhccc
Confidence 11226 9999999999999999999999999999 599999999999999999889999999999995
Q ss_pred ccCCCCCCCCCCCCcCCC---CCCCCccChHHHHHHHh------------------------------------cCCccc
Q 020615 226 GNCPRATGSGDNNLAPLD---FQSPNKFDNQYYKHLLN------------------------------------QKGLLH 266 (323)
Q Consensus 226 ~~Cp~~~~~~~~~~~~~D---~~Tp~~FDn~Yy~~l~~------------------------------------~~gll~ 266 (323)
+.||.+.+. +.....+| +.||.+|||+||++|+. +.+||+
T Consensus 274 ~~Cp~g~g~-~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~ 352 (409)
T cd00649 274 NSYGTGKGK-DTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLT 352 (409)
T ss_pred ccCCCCCCC-CCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccch
Confidence 999974331 22344577 58999999999999998 558999
Q ss_pred cccccccCcchHHHHHhhccCchhHHHHHHHHHHHh--hcCCCCCCCCC
Q 020615 267 SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM--GDISPLTGSIG 313 (323)
Q Consensus 267 SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km--~~igv~tg~~G 313 (323)
||++|+.||+|+++|++||+|++.||++|++||+|| +.+|+++--.|
T Consensus 353 SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 353 TDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred hhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999999999999999999999999999999 69999885444
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=4e-54 Score=441.21 Aligned_cols=256 Identities=20% Similarity=0.294 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHhc--------cccccchhhhhhccccc-------ccCC-cceeccCCCCCCCcCCCCCCCCCcchhhH
Q 020615 42 NTVKSAVQSAVSKE--------RRMGASLLRLHFHDCFV-------NGCD-GSILLDDTSSFTGEKTSGPNINSARGFEV 105 (323)
Q Consensus 42 ~iV~~~v~~~~~~~--------~~~aa~llRl~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~N~~~lrg~~~ 105 (323)
+.|++.|++.+... ..++|.+|||+||++.+ |||+ |+|++. +|++|+.|.++.+++.+
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~N~~Ldka~~l 128 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPDNVNLDKARRL 128 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchhhhhHHHHHHH
Confidence 46899999999864 36999999999999985 7885 777664 69999999865577788
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCcc-----------------------------
Q 020615 106 VDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTAS----------------------------- 156 (323)
Q Consensus 106 Id~iK~~le~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~----------------------------- 156 (323)
++.||+ +||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 129 L~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~ 204 (716)
T TIGR00198 129 LWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAAT 204 (716)
T ss_pred HHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhh
Confidence 887776 57889999999999999999999999999999999994332
Q ss_pred --------ccccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhhc-cCccccccccccccccccCCCccChHHHHHhhcc
Q 020615 157 --------LAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS-GAHTIGQARCVAFRNRIYNESNIESSFAKNRRGN 227 (323)
Q Consensus 157 --------~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~ 227 (323)
+.+ ..+ +|.|..++++|++.|.+||||++|||||+ ||||||++||.+|.+||..||++++.|++.|+..
T Consensus 205 ~~Gliyvnpeg-~~~-lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~ 282 (716)
T TIGR00198 205 EMGLIYVNPEG-PDG-HPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWH 282 (716)
T ss_pred hccccccCccc-ccC-CCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhccc
Confidence 112 226 99999999999999999999999999996 9999999999999999978999999999999999
Q ss_pred CCCCCCCCC-CCCcCCC---CCCCCccChHHHHHHHhc----------------------------------CCcccccc
Q 020615 228 CPRATGSGD-NNLAPLD---FQSPNKFDNQYYKHLLNQ----------------------------------KGLLHSDQ 269 (323)
Q Consensus 228 Cp~~~~~~~-~~~~~~D---~~Tp~~FDn~Yy~~l~~~----------------------------------~gll~SD~ 269 (323)
||.+.+.+. +....+| +.||.+|||+||++|+.. .++|+||+
T Consensus 283 c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDl 362 (716)
T TIGR00198 283 NQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADL 362 (716)
T ss_pred CCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhH
Confidence 996432112 2244566 589999999999999974 68999999
Q ss_pred ccccCcchHHHHHhhccCchhHHHHHHHHHHHhh--cCCCCC
Q 020615 270 ILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMG--DISPLT 309 (323)
Q Consensus 270 ~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~--~igv~t 309 (323)
+|..||+|+++|+.||+|++.|+++|++||.||+ ++|++.
T Consensus 363 aL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 363 ALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred HhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 9999999999999999999999999999999998 577654
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.4e-50 Score=413.12 Aligned_cols=256 Identities=20% Similarity=0.333 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHhc--------cccccchhhhhhccccc-------ccCC-cceeccCCCCCCCcCCCCCCCCCcchhhH
Q 020615 42 NTVKSAVQSAVSKE--------RRMGASLLRLHFHDCFV-------NGCD-GSILLDDTSSFTGEKTSGPNINSARGFEV 105 (323)
Q Consensus 42 ~iV~~~v~~~~~~~--------~~~aa~llRl~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~N~~~lrg~~~ 105 (323)
+.|++.|++.+... ..++|.+|||+||++.+ |||+ |+|++ .+|++++.|.++.++..+
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~pe~~w~~N~gL~ka~~~ 130 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPDNVNLDKARRL 130 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cccccchhhhhHHHHHHH
Confidence 57899999998764 46999999999999985 8996 67765 469999999966678899
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccc----------------------------
Q 020615 106 VDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASL---------------------------- 157 (323)
Q Consensus 106 Id~iK~~le~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~---------------------------- 157 (323)
++.||+++. ..||+||+|+||+..|||.+|||.|+|.+||.|...+..
T Consensus 131 L~pik~ky~----~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~ 206 (726)
T PRK15061 131 LWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLA 206 (726)
T ss_pred HHHHHHHhC----CCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchh
Confidence 999999875 479999999999999999999999999999999865432
Q ss_pred -----------cccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhhc-cCccccccccccccccccCCCccChHHHHHhh
Q 020615 158 -----------AAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS-GAHTIGQARCVAFRNRIYNESNIESSFAKNRR 225 (323)
Q Consensus 158 -----------~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~ 225 (323)
++ ... +|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+||..||.+++.+++.|.
T Consensus 207 a~~mgliyvnpeg-p~g-lPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLg 284 (726)
T PRK15061 207 AVQMGLIYVNPEG-PNG-NPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLG 284 (726)
T ss_pred hhhccceecCCCC-CCC-CCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhcc
Confidence 11 123 79999999999999999999999999996 99999999999999999889999999999985
Q ss_pred --ccCCCCCCCCCCCCcCCC---CCCCCccChHHHHHHHhc------------------------------------CCc
Q 020615 226 --GNCPRATGSGDNNLAPLD---FQSPNKFDNQYYKHLLNQ------------------------------------KGL 264 (323)
Q Consensus 226 --~~Cp~~~~~~~~~~~~~D---~~Tp~~FDn~Yy~~l~~~------------------------------------~gl 264 (323)
+.||.+.+. ++....+| +.||.+|||+||++|+.. .+|
T Consensus 285 w~~~c~~g~g~-dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~M 363 (726)
T PRK15061 285 WKNSYGSGKGA-DTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTM 363 (726)
T ss_pred ccccCCCCCCC-CCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCccc
Confidence 999974221 22234466 579999999999999984 589
Q ss_pred cccccccccCcchHHHHHhhccCchhHHHHHHHHHHHh--hcCCCCCC
Q 020615 265 LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM--GDISPLTG 310 (323)
Q Consensus 265 l~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km--~~igv~tg 310 (323)
|+||++|..||+++++|++||+|+++|+++|++||.|| ..+|+++-
T Consensus 364 LtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 364 LTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred ccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 99999999999999999999999999999999999999 55777653
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.4e-50 Score=374.60 Aligned_cols=212 Identities=28% Similarity=0.388 Sum_probs=178.7
Q ss_pred HHHhccccccchhhhhhcccc-------cccCCcceeccCCCCCCCcCC-CCCCCCCcchhhHHHHHHHHhhhhCCCCCC
Q 020615 51 AVSKERRMGASLLRLHFHDCF-------VNGCDGSILLDDTSSFTGEKT-SGPNINSARGFEVVDDIKSKVEKVCPGVVS 122 (323)
Q Consensus 51 ~~~~~~~~aa~llRl~FHDcf-------v~GcDgSill~~~~~~~~E~~-~~~N~~~lrg~~~Id~iK~~le~~cp~~VS 122 (323)
....+++++++||||+||||| ++||||||+|+.. .+|+. .+.|. ++++|+.|+.+ +||
T Consensus 34 ~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~----------~VS 99 (264)
T cd08201 34 APGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSP----------RSS 99 (264)
T ss_pred CcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-ccccceeeccC----------ccC
Confidence 334788999999999999999 8999999999742 36777 44554 78888877543 699
Q ss_pred HHHHHHHhhhhHHhhcCCCccccccCCCCCCCccccccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhhcc-Ccccccc
Q 020615 123 CADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSG-AHTIGQA 201 (323)
Q Consensus 123 cADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-aHTiG~~ 201 (323)
||||||||||+||+.+|||.|+|++||+|++++.+. . ||.|+.++++|++.|+++||+++|||+|+| |||||++
T Consensus 100 cADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~a 174 (264)
T cd08201 100 MADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----G-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGV 174 (264)
T ss_pred HHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----c-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeec
Confidence 999999999999999999999999999999988764 4 999999999999999999999999999995 9999999
Q ss_pred ccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHHHHhcCC----------cccccccc
Q 020615 202 RCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG----------LLHSDQIL 271 (323)
Q Consensus 202 hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~g----------ll~SD~~L 271 (323)
||..|++++ +|... .++..+|| .||.+|||+||.+++.+.. .+.||..+
T Consensus 175 hc~~f~~~~--~~g~~------------------~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~ 233 (264)
T cd08201 175 HSEDFPEIV--PPGSV------------------PDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRI 233 (264)
T ss_pred ccccchhhc--CCccc------------------cCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhh
Confidence 999987765 11000 01234798 7999999999999998642 47899999
Q ss_pred ccCcchHHHHHhhccCchhHHHHHHHHHHHhhc
Q 020615 272 FNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGD 304 (323)
Q Consensus 272 ~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~ 304 (323)
+.... ...++.+| ++..|.+.++..+.||.+
T Consensus 234 f~~d~-n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 234 FSSDG-NVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred eecCc-cHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 97654 66778888 789999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=3.9e-41 Score=315.26 Aligned_cols=222 Identities=19% Similarity=0.278 Sum_probs=181.5
Q ss_pred HHHHHHHHhccccccchhhhhhccccc-------ccCCcc-eeccCCCCCCCcCCCCCCCC--CcchhhHHHHHHHHhhh
Q 020615 46 SAVQSAVSKERRMGASLLRLHFHDCFV-------NGCDGS-ILLDDTSSFTGEKTSGPNIN--SARGFEVVDDIKSKVEK 115 (323)
Q Consensus 46 ~~v~~~~~~~~~~aa~llRl~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~~--~lrg~~~Id~iK~~le~ 115 (323)
..+++.+.......+.+|||+||++.+ ||++|+ |.| .+|++|+.|.+ +-+.+.+++.||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 567777777888999999999999985 899999 666 46999999986 45678999999998863
Q ss_pred h-CC-CCCCHHHHHHHhhhhHHhhcCC-----CccccccCCCCCCCccccccC-CCCCCCCC------------CCHHHH
Q 020615 116 V-CP-GVVSCADILAIAARHSVAILGG-----PSWNVKLGRRDSKTASLAAAN-SGVIPPPT------------STLSNL 175 (323)
Q Consensus 116 ~-cp-~~VScADiialAar~Av~~~GG-----P~~~v~~GR~D~~~s~~~~~~-~~~lP~p~------------~~~~~l 175 (323)
. -+ ..||+||+|+||+..|||.+|| |.|+|.+||.|...+...... ..++|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 2 22 2799999999999999999999 999999999999876432110 01145332 245789
Q ss_pred HHHHHHCCCCcccchhhccCc-cccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHH
Q 020615 176 INRFQAKGLSAKDMVALSGAH-TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQY 254 (323)
Q Consensus 176 ~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Y 254 (323)
++.|.+||||++|||||+||| ++|+.|..+ ...+| +.+|.+|||+|
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s--------------------------------~~G~w-T~~p~~f~N~f 217 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGS--------------------------------KHGVF-TDRPGVLTNDF 217 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCC--------------------------------CCCCC-cCCCCccccHH
Confidence 999999999999999999998 799887321 01256 47999999999
Q ss_pred HHHHHhcC--------------------C-----ccccccccccCcchHHHHHhhccC--chhHHHHHHHHHHHhhcCC
Q 020615 255 YKHLLNQK--------------------G-----LLHSDQILFNGGSTDSLVSTYASN--SKTFNSDFAAAMIKMGDIS 306 (323)
Q Consensus 255 y~~l~~~~--------------------g-----ll~SD~~L~~d~~t~~~V~~~A~d--~~~F~~~Fa~Am~Km~~ig 306 (323)
|++|++.. | .+.+|.+|.+|++.|++|+.||+| |++||++|++||.||+++.
T Consensus 218 F~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 218 FVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 99999521 1 267899999999999999999999 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.4e-35 Score=304.68 Aligned_cols=220 Identities=21% Similarity=0.285 Sum_probs=177.2
Q ss_pred HHHHHHHHH---HHhccccccchhhhhhccccc-------ccCCcc-eeccCCCCCCCcCCCCCC--CCCcchhhHHHHH
Q 020615 43 TVKSAVQSA---VSKERRMGASLLRLHFHDCFV-------NGCDGS-ILLDDTSSFTGEKTSGPN--INSARGFEVVDDI 109 (323)
Q Consensus 43 iV~~~v~~~---~~~~~~~aa~llRl~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N--~~~lrg~~~Id~i 109 (323)
+|+++|+.. +....-..+.|||++||++.+ ||++|+ |.|. +|++++.| .++.+.+++++.|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHH
Confidence 445555553 445566789999999999984 899999 7764 69999999 6455778899999
Q ss_pred HHHhhhhCCCCCCHHHHHHHhhhhHHhhc---CCC--ccccccCCCCCCCccccccCCCCCC---CC------------C
Q 020615 110 KSKVEKVCPGVVSCADILAIAARHSVAIL---GGP--SWNVKLGRRDSKTASLAAANSGVIP---PP------------T 169 (323)
Q Consensus 110 K~~le~~cp~~VScADiialAar~Av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~~lP---~p------------~ 169 (323)
|+++.. ..||.||+|+||+..|||.+ ||| .|++.+||.|....... ++.. .| .+ .
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td-~~~~-~~l~p~adgfRn~~~~~~~~ 577 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTD-AESF-TPLEPIADGFRNYLKRDYAV 577 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCC-cccc-ccCCCCCcccchhccccccC
Confidence 998863 27999999999999999998 898 58999999999876532 2222 22 11 1
Q ss_pred CCHHHHHHHHHHCCCCcccchhhccCc-cccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCC
Q 020615 170 STLSNLINRFQAKGLSAKDMVALSGAH-TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPN 248 (323)
Q Consensus 170 ~~~~~l~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~ 248 (323)
...+.|++.|.++|||++|||||+||| ++|+.|..++ ..+| +.+|.
T Consensus 578 ~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~--------------------------------~G~~-T~~p~ 624 (716)
T TIGR00198 578 TPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK--------------------------------HGVF-TDRVG 624 (716)
T ss_pred CHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC--------------------------------CCCC-cCCCC
Confidence 246679999999999999999999995 9999984221 1255 47899
Q ss_pred ccChHHHHHHHhcC--------------------C---cc--ccccccccCcchHHHHHhhccCc--hhHHHHHHHHHHH
Q 020615 249 KFDNQYYKHLLNQK--------------------G---LL--HSDQILFNGGSTDSLVSTYASNS--KTFNSDFAAAMIK 301 (323)
Q Consensus 249 ~FDn~Yy~~l~~~~--------------------g---ll--~SD~~L~~d~~t~~~V~~~A~d~--~~F~~~Fa~Am~K 301 (323)
+|||+||++|++.. | ++ .+|.+|.+|++.|++|+.||+|+ ++||++|++||.|
T Consensus 625 ~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~K 704 (716)
T TIGR00198 625 VLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTK 704 (716)
T ss_pred ccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 99999999999721 1 22 67999999999999999999997 8999999999999
Q ss_pred hhcCC
Q 020615 302 MGDIS 306 (323)
Q Consensus 302 m~~ig 306 (323)
+++++
T Consensus 705 lm~ld 709 (716)
T TIGR00198 705 VMNLD 709 (716)
T ss_pred HHhCC
Confidence 99986
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.2e-35 Score=299.72 Aligned_cols=222 Identities=21% Similarity=0.295 Sum_probs=180.8
Q ss_pred HHHHHHHHhccccccchhhhhhccccc-------ccCCcc-eeccCCCCCCCcCCCCCCC--CCcchhhHHHHHHHHhhh
Q 020615 46 SAVQSAVSKERRMGASLLRLHFHDCFV-------NGCDGS-ILLDDTSSFTGEKTSGPNI--NSARGFEVVDDIKSKVEK 115 (323)
Q Consensus 46 ~~v~~~~~~~~~~aa~llRl~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~--~~lrg~~~Id~iK~~le~ 115 (323)
..+++.+....-..+.|||++||++.+ ||++|+ |+|. +|++++.|. ++.+.+++++.||++++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 457777777777899999999999984 899999 8774 699999998 455678999999999864
Q ss_pred hCC--CCCCHHHHHHHhhhhHHhhc---CC--CccccccCCCCCCCccccccC-CCCCCCCC------------CCHHHH
Q 020615 116 VCP--GVVSCADILAIAARHSVAIL---GG--PSWNVKLGRRDSKTASLAAAN-SGVIPPPT------------STLSNL 175 (323)
Q Consensus 116 ~cp--~~VScADiialAar~Av~~~---GG--P~~~v~~GR~D~~~s~~~~~~-~~~lP~p~------------~~~~~l 175 (323)
.-. ..||.||+|+||+..|||.+ || |.|++.+||.|.......... ..++|.+. ...+.|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 321 37999999999999999998 68 999999999999876433211 11256533 234889
Q ss_pred HHHHHHCCCCcccchhhccCc-cccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHH
Q 020615 176 INRFQAKGLSAKDMVALSGAH-TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQY 254 (323)
Q Consensus 176 ~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Y 254 (323)
++.|.++|||++|||||+||| ++|+.|-.++ ..+| +.+|.+|||+|
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~--------------------------------~G~~-T~~p~~fsNdf 642 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK--------------------------------HGVF-TDRPGVLTNDF 642 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC--------------------------------CCCC-cCCCCccccHH
Confidence 999999999999999999997 7898883210 1245 47899999999
Q ss_pred HHHHHhcC--------------------C---c--cccccccccCcchHHHHHhhccC--chhHHHHHHHHHHHhhcCC
Q 020615 255 YKHLLNQK--------------------G---L--LHSDQILFNGGSTDSLVSTYASN--SKTFNSDFAAAMIKMGDIS 306 (323)
Q Consensus 255 y~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~V~~~A~d--~~~F~~~Fa~Am~Km~~ig 306 (323)
|+||++.. | + +.+|.+|.+|++.|++|+.||+| +++||++|++||.|+++++
T Consensus 643 FvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 643 FVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred HHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 99999521 1 1 47899999999999999999999 9999999999999999986
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.2e-31 Score=258.45 Aligned_cols=249 Identities=18% Similarity=0.312 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHhc--------cccccchhhhhhccccc-------ccCCcceeccCCCCCCCcCCCCCCCCCcchhhHHH
Q 020615 43 TVKSAVQSAVSKE--------RRMGASLLRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVD 107 (323)
Q Consensus 43 iV~~~v~~~~~~~--------~~~aa~llRl~FHDcfv-------~GcDgSill~~~~~~~~E~~~~~N~~~lrg~~~Id 107 (323)
.|...++..+... ..+.|-+|||+||-+.+ ||..+. .-++.++.+||.|.++.++..++.
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~nLDKarRLLW 145 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNANLDKARRLLW 145 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCcccchHHHHHHhh
Confidence 3445555555543 34889999999999985 455543 234667999999998889999999
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHhhhhHHhhcCCCccccccCCCCCCCccc------------------------------
Q 020615 108 DIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASL------------------------------ 157 (323)
Q Consensus 108 ~iK~~le~~cp~~VScADiialAar~Av~~~GGP~~~v~~GR~D~~~s~~------------------------------ 157 (323)
.||+++. ..||+||+|.|++..|++.+|++.+.+..||.|--.+..
T Consensus 146 PIKkKYG----~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaavq 221 (730)
T COG0376 146 PIKKKYG----RKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQ 221 (730)
T ss_pred hHhHhhc----ccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhe
Confidence 9999886 489999999999999999999999999999999876654
Q ss_pred --------cccCCCCCCCCCCCHHHHHHHHHHCCCCcccchhhc-cCccccccccccccccccCCCccChHHHHHh--hc
Q 020615 158 --------AAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS-GAHTIGQARCVAFRNRIYNESNIESSFAKNR--RG 226 (323)
Q Consensus 158 --------~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L--~~ 226 (323)
+++ .. .|+|..+..+++..|++|+++++|.|||+ ||||+|++|...=.+.+..+|.--+--.+-| .+
T Consensus 222 MGLIYVNPEGp-ng-~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~ 299 (730)
T COG0376 222 MGLIYVNPEGP-NG-NPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWAN 299 (730)
T ss_pred eeeEEeCCCCC-CC-CCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhcccccc
Confidence 333 34 79999999999999999999999999999 7999999997663333444665433323333 33
Q ss_pred cCCCCCCCCCCC-----CcCCCCCCCCccChHHHHHHHhcC-----------------------------------Cccc
Q 020615 227 NCPRATGSGDNN-----LAPLDFQSPNKFDNQYYKHLLNQK-----------------------------------GLLH 266 (323)
Q Consensus 227 ~Cp~~~~~~~~~-----~~~~D~~Tp~~FDn~Yy~~l~~~~-----------------------------------gll~ 266 (323)
.|..+.+ ..+ -+.| +.||++|||+||.+|+... .||.
T Consensus 300 ~~g~G~G--~dtitsGlE~~W-t~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~Mlt 376 (730)
T COG0376 300 TYGSGKG--PDTITSGLEGAW-TTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLT 376 (730)
T ss_pred ccCCCcC--cccccccccccC-CCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeec
Confidence 3433222 211 2467 4799999999999998631 3899
Q ss_pred cccccccCcchHHHHHhhccCchhHHHHHHHHHHHhhcC
Q 020615 267 SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 305 (323)
Q Consensus 267 SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~i 305 (323)
+|.+|..||..+.+.++|.+|++.|.+.|++||.||..-
T Consensus 377 tDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHR 415 (730)
T COG0376 377 TDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHR 415 (730)
T ss_pred cchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3e-14 Score=141.35 Aligned_cols=217 Identities=21% Similarity=0.307 Sum_probs=160.5
Q ss_pred HHHHHHHhccccccchhhhhhccccc-------ccCCcc-eeccCCCCCCCcCCCCCCCC--CcchhhHHHHHHHHhhhh
Q 020615 47 AVQSAVSKERRMGASLLRLHFHDCFV-------NGCDGS-ILLDDTSSFTGEKTSGPNIN--SARGFEVVDDIKSKVEKV 116 (323)
Q Consensus 47 ~v~~~~~~~~~~aa~llRl~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~~--~lrg~~~Id~iK~~le~~ 116 (323)
.++..+.+..-....|+-.+|-.+-+ ||.+|. |.|. ++++|+.|.. +.+-+.+++.|+...+
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn-- 524 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN-- 524 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 56777777777788999999988854 788887 6674 5899999963 2245778888888777
Q ss_pred CCCCCCHHHHHHHhhhhHHhhc---CCC--ccccccCCCCCCCccccccCCCCC-CCC------------CCCHHHHHHH
Q 020615 117 CPGVVSCADILAIAARHSVAIL---GGP--SWNVKLGRRDSKTASLAAANSGVI-PPP------------TSTLSNLINR 178 (323)
Q Consensus 117 cp~~VScADiialAar~Av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~~l-P~p------------~~~~~~l~~~ 178 (323)
..||.||+|+|++..||+.+ +|- .+|+.+||.|+............| |-. ....+-|+++
T Consensus 525 --kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDk 602 (730)
T COG0376 525 --KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDK 602 (730)
T ss_pred --CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHH
Confidence 47999999999999999974 565 467789999997765432111101 211 1235558888
Q ss_pred HHHCCCCcccchhhccCc-cccccccccccccccCCCccChHHHHHhhccCCCCCCCCCCCCcCCCCCCCCccChHHHHH
Q 020615 179 FQAKGLSAKDMVALSGAH-TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 257 (323)
Q Consensus 179 F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~ 257 (323)
-+-++||..||++|+||- -+|..+..+ ....| +..|.++.|.||.|
T Consensus 603 AqlL~LtapemtVLiGGlRvLg~n~g~s--------------------------------~~GVf-T~~pg~LtndFFvn 649 (730)
T COG0376 603 AQLLTLTAPEMTVLIGGLRVLGANYGGS--------------------------------KHGVF-TDRPGVLTNDFFVN 649 (730)
T ss_pred HHHhccCCccceEEEcceEeeccCCCCC--------------------------------cccee-ccCcccccchhhhh
Confidence 889999999999999885 445543211 01123 35789999999999
Q ss_pred HHhcC--------------------C-----ccccccccccCcchHHHHHhhccC--chhHHHHHHHHHHHhhcCC
Q 020615 258 LLNQK--------------------G-----LLHSDQILFNGGSTDSLVSTYASN--SKTFNSDFAAAMIKMGDIS 306 (323)
Q Consensus 258 l~~~~--------------------g-----ll~SD~~L~~d~~t~~~V~~~A~d--~~~F~~~Fa~Am~Km~~ig 306 (323)
|++-. | --..|..+-++++.|.+.+-||.| +++|.++|+.||.|..++.
T Consensus 650 LlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 650 LLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred hhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 99731 1 235677777899999999999976 7899999999999998764
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=80.12 E-value=8.4 Score=37.77 Aligned_cols=133 Identities=11% Similarity=0.150 Sum_probs=66.6
Q ss_pred hcCCCccccccCCCCCCCccccccCCCCCCCC---CCCHHHHHHHHHHCCCC----------cccchhhccCcccccccc
Q 020615 137 ILGGPSWNVKLGRRDSKTASLAAANSGVIPPP---TSTLSNLINRFQAKGLS----------AKDMVALSGAHTIGQARC 203 (323)
Q Consensus 137 ~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~----------~~dlVaLsGaHTiG~~hc 203 (323)
.+|-..|..+.||.|...-.+...... .+.. -..+.++.+.|++.|+. .+|+..|.|+|.+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~-~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l----- 252 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESY-VGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL----- 252 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccc-cccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE-----
Confidence 358788999999996543222111111 2222 23577788888888874 4566667777644
Q ss_pred ccccccccCCCccChHHHHHhhccC-CCCCCCCCCCCcCCCCCCCCccChHHHHHHHhcCCccccccccccCcchHHHHH
Q 020615 204 VAFRNRIYNESNIESSFAKNRRGNC-PRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVS 282 (323)
Q Consensus 204 ~~f~~rl~~dp~~d~~~~~~L~~~C-p~~~~~~~~~~~~~D~~Tp~~FDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~V~ 282 (323)
++.|...++|...- ..-....+.....-....+..+|-..|+-.++..++= . ..+..-++
T Consensus 253 -----------Ti~p~ll~~L~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~fr~~~~~d~ma-------~-ekl~~gir 313 (333)
T PTZ00411 253 -----------TISPKLLEELANTEDGPVERKLDPEKLTEDTEKLPELTEKEFRWELNEDAMA-------T-EKLAEGIR 313 (333)
T ss_pred -----------eCCHHHHHHHHhCCCcccCcccCcccccccccccCCCCHHHHHHHhCCCcch-------H-HHHHHHHH
Confidence 24555666664421 1100000000001001123567888887543322211 0 13446677
Q ss_pred hhccCchhHHHH
Q 020615 283 TYASNSKTFNSD 294 (323)
Q Consensus 283 ~~A~d~~~F~~~ 294 (323)
.|+.|+..-.+-
T Consensus 314 ~F~~d~~~Le~~ 325 (333)
T PTZ00411 314 NFAKDLEKLENV 325 (333)
T ss_pred HHHHHHHHHHHH
Confidence 777776554433
No 20
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=64.69 E-value=17 Score=35.36 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHhhhhCCCCCCHHHHHHHhhhhHHh--hcCCCccccccCCCCCCCccccccCCCCCCC----CCCCHHHH
Q 020615 102 GFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVA--ILGGPSWNVKLGRRDSKTASLAAANSGVIPP----PTSTLSNL 175 (323)
Q Consensus 102 g~~~Id~iK~~le~~cp~~VScADiialAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~----p~~~~~~l 175 (323)
|++.+..+++. .|+|-=.+.+....|+. .+|-..+..+.||.|-..-...+.. . .+. +-..+.++
T Consensus 137 Gi~A~~~L~~~-------GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~-~-~~~~~d~Gv~~v~~i 207 (313)
T cd00957 137 GIQAAKQLEKE-------GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDK-A-YTAEEDPGVASVKKI 207 (313)
T ss_pred HHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccc-c-CCccCCcHHHHHHHH
Confidence 66555544331 34444334444444433 3577889999999985321111100 1 111 22357788
Q ss_pred HHHHHHCCCCcc
Q 020615 176 INRFQAKGLSAK 187 (323)
Q Consensus 176 ~~~F~~~Gl~~~ 187 (323)
.+.|++.|+..+
T Consensus 208 ~~~~~~~~~~T~ 219 (313)
T cd00957 208 YNYYKKFGYKTK 219 (313)
T ss_pred HHHHHHcCCCcE
Confidence 888999887543
No 21
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=64.02 E-value=24 Score=34.32 Aligned_cols=132 Identities=13% Similarity=0.225 Sum_probs=66.4
Q ss_pred HhhcCCCccccccCCCCCCCccccccCCCCCC---CCCCCHHHHHHHHHHCCCCc----------ccchhhccCcccccc
Q 020615 135 VAILGGPSWNVKLGRRDSKTASLAAANSGVIP---PPTSTLSNLINRFQAKGLSA----------KDMVALSGAHTIGQA 201 (323)
Q Consensus 135 v~~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP---~p~~~~~~l~~~F~~~Gl~~----------~dlVaLsGaHTiG~~ 201 (323)
...+|-..|..+.||.|.-.-...+.. .+.+ ++-..+.++.+.|++.|+.. +++..|.|+|.+
T Consensus 165 aa~AGa~~ISPFVgRi~dw~~~~~g~~-~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~--- 240 (317)
T TIGR00874 165 CAEAKVTLISPFVGRILDWYKAATGKK-EYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL--- 240 (317)
T ss_pred HHHcCCCEEEeecchHhHhhhhccCcc-ccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE---
Confidence 334688899999999976311111100 1011 12345778888899988754 444445555433
Q ss_pred ccccccccccCCCccChHHHHHhhccCCCCCCCCC-CCCcCCCCCCCCccChHHHHHHHhcCCccccccccccCcchHHH
Q 020615 202 RCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGD-NNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSL 280 (323)
Q Consensus 202 hc~~f~~rl~~dp~~d~~~~~~L~~~Cp~~~~~~~-~~~~~~D~~Tp~~FDn~Yy~~l~~~~gll~SD~~L~~d~~t~~~ 280 (323)
++.|...++|...-..-..+.+ ......+ ..|..+|...|+-.++..++ .. ..+..-
T Consensus 241 -------------Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-------a~-ekl~~g 298 (317)
T TIGR00874 241 -------------TISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM-------AT-EKLAEG 298 (317)
T ss_pred -------------eCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc-------hH-HHHHHH
Confidence 3556666666542211000000 0000111 23456788888754433221 11 234566
Q ss_pred HHhhccCchhHH
Q 020615 281 VSTYASNSKTFN 292 (323)
Q Consensus 281 V~~~A~d~~~F~ 292 (323)
++.|+.|+..-.
T Consensus 299 ir~F~~d~~~Le 310 (317)
T TIGR00874 299 IRKFAADQEKLE 310 (317)
T ss_pred HHHHHHHHHHHH
Confidence 777777765443
No 22
>PRK12346 transaldolase A; Provisional
Probab=60.29 E-value=23 Score=34.48 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCCHHHHHHHhhhhHHh--hcCCCccccccCCCCCCCccccccCCCCC-CC---CCCCHHHHHHHHHHCCCC--------
Q 020615 120 VVSCADILAIAARHSVA--ILGGPSWNVKLGRRDSKTASLAAANSGVI-PP---PTSTLSNLINRFQAKGLS-------- 185 (323)
Q Consensus 120 ~VScADiialAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~~l-P~---p~~~~~~l~~~F~~~Gl~-------- 185 (323)
.|+|-=.+.+....|+. .+|-..|..+.||.|...-..... .. + |. +-..+.++.+.|++.|+.
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~-~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASf 226 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPM-DP-YVVEEDPGVKSVRNIYDYYKQHRYETIVMGASF 226 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcccc-cc-ccccCCChHHHHHHHHHHHHHcCCCcEEEeccc
Confidence 34444444444444433 468889999999998632211110 11 2 11 123577788889888864
Q ss_pred --cccchhhccCccccccccccccccccCCCccChHHHHHhhc
Q 020615 186 --AKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRG 226 (323)
Q Consensus 186 --~~dlVaLsGaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~~ 226 (323)
.+|+.+|.|+|.+ ++.|...++|..
T Consensus 227 Rn~~qi~alaG~d~l----------------Ti~p~ll~~L~~ 253 (316)
T PRK12346 227 RRTEQILALAGCDRL----------------TISPNLLKELQE 253 (316)
T ss_pred CCHHHHHHHhCCCEE----------------eCCHHHHHHHHh
Confidence 4555666666643 355666666654
No 23
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=58.74 E-value=65 Score=32.33 Aligned_cols=101 Identities=14% Similarity=0.272 Sum_probs=54.9
Q ss_pred chhhHHHHHHHHhhhhCCCCCCHHHHHHHhhhhHHh--hcCCCccccccCCCCCCCccccccCCCCCCCCC----CCHHH
Q 020615 101 RGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVA--ILGGPSWNVKLGRRDSKTASLAAANSGVIPPPT----STLSN 174 (323)
Q Consensus 101 rg~~~Id~iK~~le~~cp~~VScADiialAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP~p~----~~~~~ 174 (323)
.|++.+..+++. .|.|-=.+.+....|+. .+|-..|..+.||.|.-.-...+.+ . +|... ..+.+
T Consensus 142 eGi~A~~~L~~~-------GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~-~-~~~~~dpGv~~v~~ 212 (391)
T PRK12309 142 EGIKAAEVLEKE-------GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRD-S-YPGAEDPGVQSVTQ 212 (391)
T ss_pred HHHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCC-c-cccccchHHHHHHH
Confidence 356555544321 34443333444444333 3688899999999877322111111 1 34322 24777
Q ss_pred HHHHHHHCCCCc----------ccchhhccCccccccccccccccccCCCccChHHHHHhhc
Q 020615 175 LINRFQAKGLSA----------KDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRG 226 (323)
Q Consensus 175 l~~~F~~~Gl~~----------~dlVaLsGaHTiG~~hc~~f~~rl~~dp~~d~~~~~~L~~ 226 (323)
+.+.|++.|+.. +++..|.|+|.+ ++.|...++|..
T Consensus 213 i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~----------------Ti~p~ll~~L~~ 258 (391)
T PRK12309 213 IYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL----------------TISPKLLEQLRS 258 (391)
T ss_pred HHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee----------------eCCHHHHHHHHh
Confidence 888898888643 444455555533 355666666655
No 24
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=54.77 E-value=11 Score=29.41 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhhcCCCC
Q 020615 290 TFNSDFAAAMIKMGDISPL 308 (323)
Q Consensus 290 ~F~~~Fa~Am~Km~~igv~ 308 (323)
...++|..||.||+.+|-.
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3568999999999999863
No 25
>PRK05269 transaldolase B; Provisional
Probab=50.70 E-value=54 Score=31.95 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=30.1
Q ss_pred hcCCCccccccCCCCCCCccccccCCCCCC---CCCCCHHHHHHHHHHCCCCcc
Q 020615 137 ILGGPSWNVKLGRRDSKTASLAAANSGVIP---PPTSTLSNLINRFQAKGLSAK 187 (323)
Q Consensus 137 ~~GGP~~~v~~GR~D~~~s~~~~~~~~~lP---~p~~~~~~l~~~F~~~Gl~~~ 187 (323)
.+|-..+..+.||.|...-...+.... -+ ++-..+.++.+.|++.|+..+
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~-~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEY-APAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhccccccc-CcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 468888999999998532111110000 11 123457888889999987654
No 26
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=23.50 E-value=42 Score=26.39 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.5
Q ss_pred hccCchhHHHHHHHHHHHh
Q 020615 284 YASNSKTFNSDFAAAMIKM 302 (323)
Q Consensus 284 ~A~d~~~F~~~Fa~Am~Km 302 (323)
|-..|++||+.|+..+.|=
T Consensus 38 Y~~~QskFFe~~A~~~tkR 56 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKR 56 (90)
T ss_pred CChHHHHHHHHHhhhhhHH
Confidence 5556899999999988774
No 27
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=21.63 E-value=53 Score=28.06 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHCCCCcccchh-hccCccccccc
Q 020615 170 STLSNLINRFQAKGLSAKDMVA-LSGAHTIGQAR 202 (323)
Q Consensus 170 ~~~~~l~~~F~~~Gl~~~dlVa-LsGaHTiG~~h 202 (323)
+++.+.+-.|+++||++.++=+ |--+|-||.+.
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 4567777789999999988754 44899999886
No 28
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=21.55 E-value=58 Score=30.54 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHhhhhCCCCCCHHHHHHHhhhhHHh--hcCCCccccccCCCCCCCccccccCCCCC-CCCCC---CHHH
Q 020615 101 RGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVA--ILGGPSWNVKLGRRDSKTASLAAANSGVI-PPPTS---TLSN 174 (323)
Q Consensus 101 rg~~~Id~iK~~le~~cp~~VScADiialAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~~l-P~p~~---~~~~ 174 (323)
.|++.+..+++. .|++-=.+.+....|+. .+|...+.++.||.|...-...... . + |.... .+.+
T Consensus 127 ~Gl~A~~~L~~~-------GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~-~-~d~~~~~gi~~~~~ 197 (252)
T cd00439 127 EGIPAIKDLIAA-------GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQI-G-LDLRGKAGVAQVTL 197 (252)
T ss_pred HHHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhcccc-c-cccccCcHHHHHHH
Confidence 366666655432 34433333444444433 3677889999999997554322211 1 1 11112 3556
Q ss_pred HHHHHHHCCCCcc
Q 020615 175 LINRFQAKGLSAK 187 (323)
Q Consensus 175 l~~~F~~~Gl~~~ 187 (323)
+.+.|+..|...+
T Consensus 198 ~~~~~~~~~~~tk 210 (252)
T cd00439 198 AYKLYKQKFKKQR 210 (252)
T ss_pred HHHHHHHhCCCCe
Confidence 7777877776543
Done!