BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020619
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/299 (47%), Positives = 196/299 (65%), Gaps = 5/299 (1%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP AE +VQ+ + A NS + +RMHFHDCFVRGCDASVL+DSTA+N+AEK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 89 DSIPNQ-TVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+IPN ++ GF+VI K+ +E CP VSCADI+A A RDS + ++V +GRR
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLA-GNITYQVPSGRR 124
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLY 207
DG +SL SEAN+QIP+P FN ++L SFA+K LT ++V LSG H+IGV HC+ F+ RLY
Sbjct: 125 DGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLY 184
Query: 208 NFTGKGDADPSLDSTYAAFLRTKCRSLADNTT--IVEMDPGSGMDFDNNYYKILRQNKGM 265
NF DP+L +YAA LR C + + T V +D + DN YY ++ G+
Sbjct: 185 NFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGL 244
Query: 266 FQSDAALLTD-NGASNIVDELLDPAKFFTEFAQSMERLGAVGVLTGTSGEIRKKCNVVN 323
SD AL+T+ N ++ + ++ + ++FAQ+M ++G + VLTGT GEIR C+VVN
Sbjct: 245 LTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN 303
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 254 bits (649), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 182/299 (60%), Gaps = 5/299 (1%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY TCP A IV+ I + + ++ + A +R+HFHDCFV GCDAS+L+D T S +EK
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEK 66
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
++ PN + GF+V++ +KT LE CPG+VSC+D++ALA+ SVS P W VL GRR
Sbjct: 67 NAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLA-GGPSWTVLLGRR 125
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLY 207
D + ++ ANS IP+P + S + F++ GL +DLV LSG HT G C F+ RL+
Sbjct: 126 DSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLF 185
Query: 208 NFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQ 267
NF+G G+ DP+L+ST + L+ C +TI +D + FDNNY+ L+ N G+ Q
Sbjct: 186 NFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQ 245
Query: 268 SDAALLTDNGASNI---VDELLDPAKFFTEFAQSMERLGAVGVLTGTSGEIRKKCNVVN 323
SD L + G+S I + FF FAQSM +G + LTG++GEIR C VN
Sbjct: 246 SDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVN 304
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/300 (42%), Positives = 176/300 (58%), Gaps = 14/300 (4%)
Query: 28 NFYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAE 87
NFY CP A ++ + VA + + A LR+HFHDCFV+GCDASVL+D T++ + E
Sbjct: 5 NFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNFTGE 64
Query: 88 KDSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGR 146
K + PN ++ GF+VI+ +K+++E CPG+VSCADI+A+A RDSV W VL GR
Sbjct: 65 KTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSV-VALGGASWNVLLGR 123
Query: 147 RDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRL 206
RD + +S ANS +PAP FN S L +F++KG T +LV LSG HTIG C F R+
Sbjct: 124 RDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRI 183
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YN + ++D TYA L+ C S+ +T + D + FDN YY LR KG+
Sbjct: 184 YN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLL 236
Query: 267 QSDAALLTDNGA---SNIVDELLDPAKFFTEFAQSMERLGAVGVLTGTSGEIRKKCNVVN 323
SD L NG S + + A F T+F +M ++G + LTGTSG+IR C N
Sbjct: 237 HSDQQLF--NGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 236 bits (603), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 130/299 (43%), Positives = 180/299 (60%), Gaps = 5/299 (1%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY+ETCP IV +I+ + + A +R+HFHDCFV+GCD SVL+++T + +E+
Sbjct: 6 FYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQ 65
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D++PN ++ G DV+ ++KT +E CP VSCADI+A+A + S P W V GRR
Sbjct: 66 DALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAA-EIASVLGGGPGWPVPLGRR 124
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLY 207
D + + AN +PAP FN ++LK SFA +GL DLV LSGGHT G C+ F RLY
Sbjct: 125 DSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLY 184
Query: 208 NFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQ 267
NF+ G+ DP+L++TY LR +C A + +D + FDN YY L Q G+ Q
Sbjct: 185 NFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQ 244
Query: 268 SDAALLTDNGASN--IVDEL-LDPAKFFTEFAQSMERLGAVGVLTGTSGEIRKKCNVVN 323
SD L + GA IV+ + FF+ F SM ++G +GVLTG GEIR +CN VN
Sbjct: 245 SDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVN 303
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 179/299 (59%), Gaps = 5/299 (1%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY TCP A +V+ I+ + +S + A +R+HFHDCFV GCDAS+L+D++ S +EK
Sbjct: 8 FYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSIISEK 67
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
++ PN + GF+V++ +KT LE CPG+VSC D++ALA++ SVS P W V GRR
Sbjct: 68 NAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLS-GGPSWTVDLGRR 126
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLY 207
D + + ANS IP+P+ S + F++ GL +DLV LSG HT G C FS RL+
Sbjct: 127 DTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLF 186
Query: 208 NFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQ 267
NF+GKG+ DP+L++T + L+ C + +D + FDNNY+ L+ N G+ Q
Sbjct: 187 NFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQ 246
Query: 268 SDAALLTDNGASNI---VDELLDPAKFFTEFAQSMERLGAVGVLTGTSGEIRKKCNVVN 323
SD L + G++ I + FF FAQSM +G + LTG+SGEIR C N
Sbjct: 247 SDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKKTN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 173/301 (57%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 125
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 126 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 185
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+MD + FDN YY L + KG+
Sbjct: 186 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQKGLI 245
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 246 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 305
Query: 323 N 323
N
Sbjct: 306 N 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 172/301 (57%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 124
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 125 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 184
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 185 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 244
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 245 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 304
Query: 323 N 323
N
Sbjct: 305 N 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 172/301 (57%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 124
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 125 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 184
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 185 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 244
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 245 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 304
Query: 323 N 323
N
Sbjct: 305 N 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 172/301 (57%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 124
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 125 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 184
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 185 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 244
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 245 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 304
Query: 323 N 323
N
Sbjct: 305 N 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 172/301 (57%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 125
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 126 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 185
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 186 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 245
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 246 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 305
Query: 323 N 323
N
Sbjct: 306 N 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 172/301 (57%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 124
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGH+ G C F RL
Sbjct: 125 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRL 184
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 185 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 244
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 245 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 304
Query: 323 N 323
N
Sbjct: 305 N 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 171/301 (56%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 125
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +P P F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 126 DSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 185
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 186 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 245
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 246 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 305
Query: 323 N 323
N
Sbjct: 306 N 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 171/301 (56%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 125
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +P P F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 126 DSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 185
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 186 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 245
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 246 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 305
Query: 323 N 323
N
Sbjct: 306 N 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 171/301 (56%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 124
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV L GGHT G C F RL
Sbjct: 125 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRL 184
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 185 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 244
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 245 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 304
Query: 323 N 323
N
Sbjct: 305 N 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 230 bits (587), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 171/301 (56%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HF DCFV GCDAS+L+D+T S EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSFRTEK 66
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 125
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 126 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 185
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 186 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 245
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 246 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 305
Query: 323 N 323
N
Sbjct: 306 N 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 230 bits (587), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 171/301 (56%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A LR+HFHDCFV GCDAS+L+D+T S EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 125
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGHT G C RL
Sbjct: 126 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIMDRL 185
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 186 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 245
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 246 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 305
Query: 323 N 323
N
Sbjct: 306 N 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 170/301 (56%), Gaps = 7/301 (2%)
Query: 29 FYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEK 88
FY +CP +IV+ I + + + A L +HF DCFV GCDAS+L+D+T S EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSFRTEK 65
Query: 89 DSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRR 147
D+ N + GF VI+ +K +E CP VSCAD++ +A + SV+ P W V GRR
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLA-GGPSWRVPLGRR 124
Query: 148 DGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT-VHDLVVLSGGHTIGVGHCNFFSRRL 206
D + + AN+ +PAP F +LK SF + GL DLV LSGGHT G C F RL
Sbjct: 125 DSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRL 184
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
YNF+ G DP+L++TY LR C + + +V+ D + FDN YY L + KG+
Sbjct: 185 YNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLI 244
Query: 267 QSDAALLTDNGASNIVDELLDPAK----FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
QSD L + A++ + + A FF F ++M+R+G + LTGT G+IR C VV
Sbjct: 245 QSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVV 304
Query: 323 N 323
N
Sbjct: 305 N 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 172/302 (56%), Gaps = 13/302 (4%)
Query: 28 NFYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAE 87
+ Y ++CP IV+K + + + A +R+HFHDCFV GCDAS+L+D S E
Sbjct: 5 DIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS---E 61
Query: 88 KDSIPN-QTVGGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGR 146
K +IPN + GF+VI+ +K +E CPG+VSCADI+ LA RDSV P W V GR
Sbjct: 62 KLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLS-GGPGWRVALGR 120
Query: 147 RDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRL 206
+DG ++ + AN+ +P+P + F + L + D+V LSG HT G C FS RL
Sbjct: 121 KDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRL 179
Query: 207 YNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMF 266
+NFTG G+ D +L+++ + L+T C ++ +D + FDNNY+K L + KG+
Sbjct: 180 FNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLL 239
Query: 267 QSDAALLTDNGASNIVDELLDP-----AKFFTEFAQSMERLGAVGVLTGTSGEIRKKCNV 321
SD L + + A N +L++ + FF +F +M R+G + G SGE+R C V
Sbjct: 240 SSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNCRV 297
Query: 322 VN 323
+N
Sbjct: 298 IN 299
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 193 bits (491), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 169/301 (56%), Gaps = 12/301 (3%)
Query: 28 NFYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAE 87
+FY +TCP AE IV++ + + V + L A LR+HFHDCFV+GCDASVL+D +A+ E
Sbjct: 12 DFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGE 71
Query: 88 KDSIPNQTV--GGFDVIEEVKTELEKKCPG-IVSCADIVALATRDSVSFQFEKPLWEVLT 144
+ + PN T+ F + +++ LE++C G +VSC+DI+ALA RDSV P + V
Sbjct: 72 QQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVS-GGPDYRVPL 130
Query: 145 GRRDGR-ISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFS 203
GRRD R + + S +P PS N L GL DLV +SGGHTIG+ HC+ F
Sbjct: 131 GRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFE 190
Query: 204 RRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNK 263
RL+ DP++ T+ + L+ C + + V +D + FDN YY L +
Sbjct: 191 DRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKYYIDLVNRE 244
Query: 264 GMFQSDAALLTDNGASNIVDELLDPAK-FFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322
G+F SD L T+ IV+ + FF +F S+ ++G + V T GE+R+ C+V
Sbjct: 245 GLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSVR 304
Query: 323 N 323
N
Sbjct: 305 N 305
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 138
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KEASGFEGPWTSN 193
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 194 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 223 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 138
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 193
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 194 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 223 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 138
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 193
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 194 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 223 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 126
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 181
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 182 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 210
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 211 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 126
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 181
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 182 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 210
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 211 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 138
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 193
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 194 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 223 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 138
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 193
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 194 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 223 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 138
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 193
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 194 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 223 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 126
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 181
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 182 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 210
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 211 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 138
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 193
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 194 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 223 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + L+ + P I+S AD LA +V P GR D
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVT-GGPEVPFHPGRED---KPEPPP 126
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GLT D+V LSGGHTIG H + F G ++
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 181
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + +G+ Q SD AL
Sbjct: 182 PLI-------------------------------FDNSYFTELLSGEKEGLLQLPSDKAL 210
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
L+D +VD+ D FF ++A++ ++L +G
Sbjct: 211 LSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 245
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 32/205 (15%)
Query: 117 VSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIP--APSFNFSRLKQS 174
V+ AD+ LA+ ++ + P + GR D ++P P L+
Sbjct: 87 VTYADLFQLASATAIE-EAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDV 145
Query: 175 FASKGLTVHDLVVLSGGHTIGVGHCNF--FSRRLYNFTGKGDADPSLDSTYAAFLRTKCR 232
F GL ++V LSG HT+G + + + +T G P S A +L+
Sbjct: 146 FYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLK---- 201
Query: 233 SLADNTTIVEMDPGSGMDFDNNYYKILRQNKG----MFQSDAALLTDNGASNIVDEL-LD 287
FDN+Y+K +++ + + +DAAL D ++ D
Sbjct: 202 ------------------FDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAAD 243
Query: 288 PAKFFTEFAQSMERLGAVGVLTGTS 312
P FF ++A++ +L +G G +
Sbjct: 244 PEAFFKDYAEAHAKLSNLGAKFGPA 268
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEA 157
G D+ + ++++ P IVS AD LA +V P GR D
Sbjct: 72 GLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEIT-GGPEVPFHPGRED---KPEPPP 126
Query: 158 NSQIPAPSFNFSRLKQSFA-SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDAD 216
++P + L+ F + GL+ D+V LSGGHTIG H + F G ++
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAH-----KERSGFEGPWTSN 181
Query: 217 PSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKIL--RQNKGMFQ--SDAAL 272
P + FDN+Y+ L + G+ Q SD AL
Sbjct: 182 PLI-------------------------------FDNSYFTELLTGEKDGLLQLPSDKAL 210
Query: 273 LTDNGASNIVDEL-LDPAKFFTEFAQSMERLGAVG 306
LTD+ +V++ D FF ++A++ +L +G
Sbjct: 211 LTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELG 245
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 136
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G HT+G H + + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL-----KNSGYEGPW 191
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A+P++ +S Y L + ++ + D SG M +D +
Sbjct: 192 TANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYS 237
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 238 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 136
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G HT+G H + + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL-----KNSGYEGPW 191
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
DA ++ +S Y L + ++ + D SG M +D +
Sbjct: 192 DATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYS 237
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 238 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 136
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G HT+G H + + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL-----KNSGYEGPW 191
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A+ ++ +S Y L + ++ + D SG M +D +
Sbjct: 192 TANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYS 237
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 238 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 136
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V LSG HT+G H + + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHL-----KNSGYEGPW 191
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A+ ++ +S Y L + ++ + D SG Y ++ +D +
Sbjct: 192 TANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSG------YLQL--------PTDYS 237
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 238 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 35/215 (16%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 133
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGG 188
Query: 214 DADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAALL 273
+ + Y L + ++ + D SG M +D +L+
Sbjct: 189 ANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYSLI 234
Query: 274 TDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
D +IV E D KFF +F+++ E+L G+
Sbjct: 235 QDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 269
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 35/215 (16%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 134
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 135 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGG 189
Query: 214 DADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAALL 273
+ + Y L + ++ + D SG M +D +L+
Sbjct: 190 ANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYSLI 235
Query: 274 TDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
D +IV E D KFF +F+++ E+L G+
Sbjct: 236 QDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 270
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 35/215 (16%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 139
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 140 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGG 194
Query: 214 DADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAALL 273
+ + Y L + ++ + D SG M +D +L+
Sbjct: 195 ANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYSLI 240
Query: 274 TDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
D +IV E D KFF +F+++ E+L G+
Sbjct: 241 QDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 275
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 136
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G HT+G H + + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL-----KNSGYEGPW 191
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A+ ++ +S Y L + ++ + D SG Y ++ +D +
Sbjct: 192 TANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSG------YLQL--------PTDYS 237
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 238 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 136
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGPG 191
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A ++ + Y L + ++ + D SG M +D +
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYS 237
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 238 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 138
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGPG 193
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A ++ + Y L + ++ + D SG M +D +
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYS 239
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 240 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 276
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 133
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGPG 188
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A ++ + Y L + ++ + D SG M +D +
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYS 234
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 235 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 271
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 134
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 135 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGPG 189
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A ++ + Y L + ++ + D SG M +D +
Sbjct: 190 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYS 235
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 236 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 272
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 136
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGPG 191
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A ++ + Y L + ++ + D SG M +D +
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGY--------------MMLPTDYS 237
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L+ D +IV E D KFF +F+++ E+L G+
Sbjct: 238 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDGI 274
>pdb|4FXG|A Chain A, Complement C4 In Complex With Masp-2
pdb|4FXG|D Chain D, Complement C4 In Complex With Masp-2
pdb|4FXK|A Chain A, Human Complement C4
Length = 656
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 246 GSGMDFDNNYYKILRQNKGMFQSDAALLTDNGASNIVDELLDPAKFFTEF 295
GSG F + YY IL + + +F + T S VD L P+ +F F
Sbjct: 478 GSGATFSHYYYMILSRGQIVFMNREPKRTLTSVSVFVDHHLAPSFYFVAF 527
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 84/215 (39%), Gaps = 33/215 (15%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 133
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGPW 188
Query: 214 DADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAALL 273
A ++ F K +L + +E + + +D+ + M +D +L+
Sbjct: 189 GAANNV------FTNEKYLNLLNEDWKLEKNDANNEQWDS------KSGYMMLPTDYSLI 236
Query: 274 TDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
D +IV E D KFF +F+++ E+L G+
Sbjct: 237 QDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 82/217 (37%), Gaps = 37/217 (17%)
Query: 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVS-FQFEKPLWEVLTGRRDGRISLVSE 156
GF +E + E +S D+ +L +V Q K W R GR+ +
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPW------RCGRVDTPED 136
Query: 157 A---NSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG 213
N ++P + ++ F + ++V L G H +G H + + G G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGPG 191
Query: 214 DADPSL--DSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAA 271
A ++ + Y L + ++ + D SG Y +L N + Q
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YMMLPTNYSLIQDPKY 244
Query: 272 LLTDNGASNIVDELL-DPAKFFTEFAQSMERLGAVGV 307
L +IV E D KFF +F+++ E+L G+
Sbjct: 245 L-------SIVKEYANDQDKFFKDFSKAFEKLLENGI 274
>pdb|3N89|A Chain A, Kh Domains
pdb|3N89|B Chain B, Kh Domains
Length = 376
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 227 LRTKCRSLADNTTIVEMDPGS---GMDFDNNYYKILRQNKGMFQSDAALLTDNGASNIVD 283
L+ + L N ++E++P M+F++ YY ++ + G ++ A+++ + +N +
Sbjct: 9 LKAQGLPLPSNIPMIEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAE---TNTLI 65
Query: 284 ELLDPAKFFT---EFAQSMERLGAVGVLTGTSGEIRKKCN 320
+L D + T FAQ + G G + +R+ C+
Sbjct: 66 QLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH 105
>pdb|4HCE|A Chain A, Crystal Structure Of The Telomeric Saccharomyces
Cerevisiae Cdc13 Ob2 Domain
pdb|4HCE|B Chain B, Crystal Structure Of The Telomeric Saccharomyces
Cerevisiae Cdc13 Ob2 Domain
Length = 152
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 90 SIPNQT-VGGFDVIEEVKTELEKKCP--GIVSC-----ADIVALATRDSVSFQFEKPLWE 141
++P++ V G + IE V E+ C G+++C +DI+ L D +S + E+ LW+
Sbjct: 52 NVPDKVLVPGVNCIEIVIPTRERICELFGVLNCQSDKISDILLLEKPDRISVEVERILWD 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,089,838
Number of Sequences: 62578
Number of extensions: 370365
Number of successful extensions: 910
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 62
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)