Query 020619
Match_columns 323
No_of_seqs 184 out of 1418
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 3E-108 7E-113 781.8 26.1 302 17-323 17-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1E-101 2E-106 734.9 25.7 297 24-322 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.5E-72 3.3E-77 518.3 10.1 227 41-287 1-229 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 8.5E-70 1.9E-74 511.4 19.8 229 39-319 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 4.9E-67 1.1E-71 487.2 18.8 229 36-309 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.8E-65 3.8E-70 475.4 19.5 229 28-308 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 4.2E-64 9.1E-69 480.5 20.6 236 37-323 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 9.5E-64 2E-68 463.2 19.7 219 38-308 17-248 (251)
9 cd00314 plant_peroxidase_like 100.0 4.3E-59 9.4E-64 434.6 17.1 223 40-304 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.7E-56 3.8E-61 434.6 18.4 266 30-313 35-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.8E-53 4E-58 436.9 19.8 261 30-309 45-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 4.5E-50 9.8E-55 409.8 19.4 262 30-310 47-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 5.1E-51 1.1E-55 378.1 11.1 214 46-304 32-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 1.4E-39 3E-44 305.3 16.6 219 43-306 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.5E-34 3.3E-39 297.4 15.6 220 40-307 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 7.8E-34 1.7E-38 290.9 16.5 220 43-307 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 2.6E-30 5.7E-35 254.5 15.5 249 40-306 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 4.9E-12 1.1E-16 126.0 12.7 215 43-306 452-725 (730)
19 COG3763 Uncharacterized protei 57.6 14 0.0003 28.1 3.3 28 40-67 24-51 (71)
20 PRK01844 hypothetical protein; 51.2 21 0.00046 27.3 3.4 28 40-67 24-51 (72)
21 PF11895 DUF3415: Domain of un 46.2 18 0.00038 28.3 2.3 19 290-308 2-20 (80)
22 PRK00523 hypothetical protein; 42.2 38 0.00082 25.9 3.5 28 40-67 25-52 (72)
23 PF15240 Pro-rich: Proline-ric 33.6 31 0.00067 30.9 2.2 20 8-27 2-21 (179)
24 PF03672 UPF0154: Uncharacteri 25.0 1.1E+02 0.0023 22.9 3.5 28 40-67 17-44 (64)
25 PTZ00411 transaldolase-like pr 23.7 52 0.0011 32.4 2.0 47 136-182 181-230 (333)
26 KOG0400 40S ribosomal protein 21.1 66 0.0014 27.5 1.9 31 168-198 33-64 (151)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3.1e-108 Score=781.84 Aligned_cols=302 Identities=46% Similarity=0.836 Sum_probs=285.3
Q ss_pred HHhhccCCCCcCccccCChhHHHHHHHHHHHHHHhCCCchhhhhHhhhcccccCCCCcceeccCCCCCccccCCCCCCCC
Q 020619 17 LGACRGGGLGKNFYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEKDSIPNQTV 96 (323)
Q Consensus 17 ~~~~~~~~l~~~fy~~sCP~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~l 96 (323)
.++.+.++|+++||++|||++|+||+++|++++.++|+++|++|||+||||||+||||||||+++ .+||++++|.+|
T Consensus 17 ~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l 93 (324)
T PLN03030 17 TTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLL 93 (324)
T ss_pred cccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCc
Confidence 34455677999999999999999999999999999999999999999999999999999999864 369999999999
Q ss_pred cchhHHHHHHHHHHhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHH
Q 020619 97 GGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFA 176 (323)
Q Consensus 97 ~g~~~I~~iK~~le~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~ 176 (323)
+||++|+.||+++|++||++||||||||+||||||+++ |||.|+|++||||+++|.++++. +||.|+.++++|++.|+
T Consensus 94 ~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~-gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~ 171 (324)
T PLN03030 94 RGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLT-NGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFA 171 (324)
T ss_pred chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhcccccc-CCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999887775 89999999999999999
Q ss_pred HCCCCcccceecccCceecccccccccccccccCCCC-CCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHH
Q 020619 177 SKGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKG-DADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNY 255 (323)
Q Consensus 177 ~~Gl~~~d~VaLsGaHTiG~~hc~~f~~Rl~nf~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Y 255 (323)
++||+.+|||+||||||||++||.+|.+|||||+|++ .+||+||+.|+..|++.||..+..++.+++|+.||.+|||+|
T Consensus 172 ~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Y 251 (324)
T PLN03030 172 AKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASF 251 (324)
T ss_pred HcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHH
Confidence 9999999999999999999999999999999999875 589999999999999999953323346789999999999999
Q ss_pred HHHHhhccccchhhhhhccCcchHHHHHHhcC-h----hHHHHHHHHHHHHhhcCCCCCCCCCcccccCccCC
Q 020619 256 YKILRQNKGMFQSDAALLTDNGASNIVDELLD-P----AKFFTEFAQSMERLGAVGVLTGTSGEIRKKCNVVN 323 (323)
Q Consensus 256 y~~l~~~~gll~SD~~L~~d~~t~~~V~~yA~-~----~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n 323 (323)
|+||+.++|+|+|||+|+.|++|+++|++||. + +.||++|++||+|||+|+|+||.+||||++|+++|
T Consensus 252 y~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 252 FSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 99999999999999999999999999999997 5 49999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1e-101 Score=734.92 Aligned_cols=297 Identities=54% Similarity=0.943 Sum_probs=286.8
Q ss_pred CCCcCccccCChhHHHHHHHHHHHHHHhCCCchhhhhHhhhcccccCCCCcceeccCCCCCccccCCCCCCCCcchhHHH
Q 020619 24 GLGKNFYKETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDSTASNSAEKDSIPNQTVGGFDVIE 103 (323)
Q Consensus 24 ~l~~~fy~~sCP~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~l~g~~~I~ 103 (323)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.++.+|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHHHHHhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHCCCCcc
Q 020619 104 EVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVH 183 (323)
Q Consensus 104 ~iK~~le~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 183 (323)
+||+++|+.||++||||||||||||+||+++ |||.|+|++||+|++++.+..+ ++||.|+.+++++++.|+++||+++
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~-GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLA-GGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceecc-CCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999999999999 9999999999999998877666 7899999999999999999999999
Q ss_pred cceecccCceecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHHHHHhhcc
Q 020619 184 DLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNK 263 (323)
Q Consensus 184 d~VaLsGaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~ 263 (323)
|||||+||||||++||.+|.+|||||+|++.+||+||+.|+..|++.||..+..+..+++|+.||.+|||+||++|+.++
T Consensus 159 d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 159 DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc
Confidence 99999999999999999999999999999899999999999999999997544456789999999999999999999999
Q ss_pred ccchhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhhcCCCCCCCCCcccccCccC
Q 020619 264 GMFQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLGAVGVLTGTSGEIRKKCNVV 322 (323)
Q Consensus 264 gll~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~ 322 (323)
|+|+|||+|+.|++|+++|++||. |+.|+++|++||+||++++|+||.+||||++|+++
T Consensus 239 glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999 99999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.5e-72 Score=518.32 Aligned_cols=227 Identities=46% Similarity=0.785 Sum_probs=208.6
Q ss_pred HHHHHHHHHHhCCCchhhhhHhhhccccc-CCCCcceeccCCCCCccccCCCCCCCCc-chhHHHHHHHHHHhhCCCccc
Q 020619 41 VQKIIWKNVALNSTLPAKFLRMHFHDCFV-RGCDASVLIDSTASNSAEKDSIPNQTVG-GFDVIEEVKTELEKKCPGIVS 118 (323)
Q Consensus 41 Vr~~v~~~~~~~~~~aa~llRL~FHDcfv-~GcDgSill~~~~~~~~E~~~~~N~~l~-g~~~I~~iK~~le~~cp~~VS 118 (323)
||++|++++.++++++|+||||+|||||+ +|||||||+. .+|+++++|.+|+ ++++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 79999999999999999999999999999 9999999983 3699999999998 999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHCCCCcccceecccCceecccc
Q 020619 119 CADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGGHTIGVGH 198 (323)
Q Consensus 119 cADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGaHTiG~~h 198 (323)
|||||+||||+||+.+ |||.|+|++||+|++++++.++ .+||.|+.+++++++.|+++|||++|||||+||||||++|
T Consensus 76 ~ADiialAa~~av~~~-GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~ 153 (230)
T PF00141_consen 76 CADIIALAARDAVELC-GGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAH 153 (230)
T ss_dssp HHHHHHHHHHHHHHHT-TGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEES
T ss_pred HHHHHHHHhhhccccc-cccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccce
Confidence 9999999999999999 9999999999999999999877 7899999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHHHHHhhccccchhhhhhccCcch
Q 020619 199 CNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKGMFQSDAALLTDNGA 278 (323)
Q Consensus 199 c~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t 278 (323)
|.+|. ||| + .+||+||+.|+.. .|+ .++. ..+++| ||.+|||+||++|+.++|+|+||++|+.|++|
T Consensus 154 c~~f~-rl~-~----~~dp~~d~~~~~~---~C~-~~~~-~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t 220 (230)
T PF00141_consen 154 CSSFS-RLY-F----PPDPTMDPGYAGQ---NCN-SGGD-NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPET 220 (230)
T ss_dssp GGCTG-GTS-C----SSGTTSTHHHHHH---SSS-TSGC-TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTH
T ss_pred ecccc-ccc-c----cccccccccccee---ccC-CCcc-cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHH
Confidence 99999 999 4 5799999999988 993 3322 277888 99999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 020619 279 SNIVDELLD 287 (323)
Q Consensus 279 ~~~V~~yA~ 287 (323)
+++|++||+
T Consensus 221 ~~~V~~yA~ 229 (230)
T PF00141_consen 221 RPIVERYAQ 229 (230)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999984
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=8.5e-70 Score=511.40 Aligned_cols=229 Identities=26% Similarity=0.408 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHhCCCchhhhhHhhhcccc-------cCCCCcceeccCCCCCccccCCCCCCCC-cchhHHHHHHHHHH
Q 020619 39 DIVQKIIWKNVALNSTLPAKFLRMHFHDCF-------VRGCDASVLIDSTASNSAEKDSIPNQTV-GGFDVIEEVKTELE 110 (323)
Q Consensus 39 ~iVr~~v~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~~~~E~~~~~N~~l-~g~~~I~~iK~~le 110 (323)
+.+|+++ ..+.++|.++|.+|||+||||| ++||||||+++ +|+++++|.|| +||++|++||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 4566667 4477899999999999999999 89999999985 59999999999 5999999999987
Q ss_pred hhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHCCCCcccceeccc
Q 020619 111 KKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSG 190 (323)
Q Consensus 111 ~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsG 190 (323)
++|||||||+||||+||+++ |||.|+|++||+|++++++ +++||+|+.+++++++.|+++||+++|||||+|
T Consensus 87 ----~~VScADilalAardAV~~~-GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG 158 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVT-GGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG 158 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhc-CCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 48999999999999999999 9999999999999998863 468999999999999999999999999999999
Q ss_pred CceecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHHHHHhhc--ccc--c
Q 020619 191 GHTIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQN--KGM--F 266 (323)
Q Consensus 191 aHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~--~gl--l 266 (323)
|||||++||. |+ +|.| .| + .||.+|||+||++++.+ +|+ |
T Consensus 159 AHTiG~ahc~----r~-g~~g------------------------~~------~-~Tp~~FDN~Yy~~ll~~~~~gll~L 202 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDG------------------------PW------T-KEPLKFDNSYFVELLKGESEGLLKL 202 (289)
T ss_pred cccccccccc----CC-CCCC------------------------CC------C-CCCCccChHHHHHHHcCCcCCcccc
Confidence 9999999995 54 3322 01 1 69999999999999998 788 7
Q ss_pred hhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhhcCCCCCCCCCcccccC
Q 020619 267 QSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLGAVGVLTGTSGEIRKKC 319 (323)
Q Consensus 267 ~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C 319 (323)
+||++|+.|++|+++|++||. |+.|+++|++||+||++|+|+||++||+.+.-
T Consensus 203 ~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 203 PTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred ccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 999999999999999999999 99999999999999999999999999998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.9e-67 Score=487.17 Aligned_cols=229 Identities=24% Similarity=0.327 Sum_probs=207.4
Q ss_pred hHHHHHHHHHHHHHHhCCCchhhhhHhhhcccccCCCCcceeccC---CCCCccccCCCCCCCC-cchhHHHHHHHHHHh
Q 020619 36 EAEDIVQKIIWKNVALNSTLPAKFLRMHFHDCFVRGCDASVLIDS---TASNSAEKDSIPNQTV-GGFDVIEEVKTELEK 111 (323)
Q Consensus 36 ~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~---~~~~~~E~~~~~N~~l-~g~~~I~~iK~~le~ 111 (323)
..++|||++|++.+. +++++|++|||+|||||+ ||+|++++. +..+.+|+++++|.+| +||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999994 777776643 3334579999999999 8999999999986
Q ss_pred hCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHCCCCcccceecccC
Q 020619 112 KCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSGG 191 (323)
Q Consensus 112 ~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsGa 191 (323)
| +||||||||||||+||+.+ |||.|+|++||+|+.++....++++||.|+.+++++++.|+++||+++|||||+||
T Consensus 86 --~-~VScADilalAar~Av~~~-GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEM-GGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHc-CCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 4 8999999999999999999 99999999999999999887778889999999999999999999999999999999
Q ss_pred ceecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHHHHHhhccc-------
Q 020619 192 HTIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKG------- 264 (323)
Q Consensus 192 HTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~g------- 264 (323)
||||++||.. ++|.|. + ..||.+|||+||++|+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g~------------------------~-------~~tp~~FDn~Yy~~ll~~~g~~~~~~~ 205 (253)
T cd00691 162 HTLGRCHKER-----SGYDGP------------------------W-------TKNPLKFDNSYFKELLEEDWKLPTPGL 205 (253)
T ss_pred ceeecccccC-----CCCCCC------------------------C-------CCCCCcccHHHHHHHhcCCCccCcCcc
Confidence 9999999953 233221 1 15999999999999999999
Q ss_pred -cchhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhhcCCCCC
Q 020619 265 -MFQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLGAVGVLT 309 (323)
Q Consensus 265 -ll~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~t 309 (323)
+|+||++|+.|++|+++|+.||. ++.|+++|++||+||++++|..
T Consensus 206 ~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 206 LMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred eechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999 9999999999999999999864
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.8e-65 Score=475.36 Aligned_cols=229 Identities=27% Similarity=0.427 Sum_probs=206.0
Q ss_pred Cccc--cCChhHHHHHHHHHHHHHHhCCCchhhhhHhhhc-----ccccC--CCCcceeccCCCCCccccCCCCCCCC-c
Q 020619 28 NFYK--ETCPEAEDIVQKIIWKNVALNSTLPAKFLRMHFH-----DCFVR--GCDASVLIDSTASNSAEKDSIPNQTV-G 97 (323)
Q Consensus 28 ~fy~--~sCP~~e~iVr~~v~~~~~~~~~~aa~llRL~FH-----Dcfv~--GcDgSill~~~~~~~~E~~~~~N~~l-~ 97 (323)
+||. +-|+++++.+++.+++.+ .+++++|.||||+|| ||+++ ||||||.++ +|+++++|.+| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~------~E~~~~~N~gl~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD------AEQAHGANSGIHI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc------ccccCCCccCHHH
Confidence 4664 348899999999999987 788999999999999 88876 999999543 69999999999 7
Q ss_pred chhHHHHHHHHHHhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHHH
Q 020619 98 GFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFAS 177 (323)
Q Consensus 98 g~~~I~~iK~~le~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 177 (323)
||++|+.||+++ ++||||||||||||+||+++ |||.|+|++||+|++++++ +++||.|+.++++|++.|++
T Consensus 77 ~~~~i~~ik~~~-----~~VScADilalAardAV~~~-GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 77 ALRLLDPIREQF-----PTISFADFHQLAGVVAVEVT-GGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhc-CCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHH
Confidence 999999999998 58999999999999999999 9999999999999999865 46799999999999999996
Q ss_pred -CCCCcccceecccCceecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHH
Q 020619 178 -KGLTVHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYY 256 (323)
Q Consensus 178 -~Gl~~~d~VaLsGaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy 256 (323)
+|||++|||||+||||||++|| .|+ +|.| .+ + .||.+|||+||
T Consensus 148 ~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g------------------------~~------~-~tp~~fDn~Yy 191 (250)
T PLN02364 148 QMGLSDKDIVALSGAHTLGRCHK----DRS-GFEG------------------------AW------T-SNPLIFDNSYF 191 (250)
T ss_pred hcCCCHHHheeeecceeeccccC----CCC-CCCC------------------------CC------C-CCCCccchHHH
Confidence 6999999999999999999999 344 3322 11 1 68999999999
Q ss_pred HHHhhc--cccch--hhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhhcCCCC
Q 020619 257 KILRQN--KGMFQ--SDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLGAVGVL 308 (323)
Q Consensus 257 ~~l~~~--~gll~--SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~ 308 (323)
++|+.+ +|+|. ||++|+.|++|+.+|++||. ++.|+++|++||+||++|++-
T Consensus 192 ~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 192 KELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999998 89865 99999999999999999999 999999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.2e-64 Score=480.50 Aligned_cols=236 Identities=23% Similarity=0.294 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHHhCC---CchhhhhHhhhccccc------------CCCCcceeccCCCCCccccCCCCCCCCcchhH
Q 020619 37 AEDIVQKIIWKNVALNS---TLPAKFLRMHFHDCFV------------RGCDASVLIDSTASNSAEKDSIPNQTVGGFDV 101 (323)
Q Consensus 37 ~e~iVr~~v~~~~~~~~---~~aa~llRL~FHDcfv------------~GcDgSill~~~~~~~~E~~~~~N~~l~g~~~ 101 (323)
+|..|+++|++.+..+. ..|+.+|||+||||++ +|||||||++.+ .|+++++|.||+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 58899999999998554 4567799999999996 799999999753 599999999998 99
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHCCCC
Q 020619 102 IEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLT 181 (323)
Q Consensus 102 I~~iK~~le~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~ 181 (323)
|+.||..+|+.| ||||||||||||+||+.++|||.|+|++||+|++++.+ +++||.|+.++++|++.|+++||+
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~ 163 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGFS 163 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCC
Confidence 999999999998 99999999999999995449999999999999998865 468999999999999999999999
Q ss_pred cccceecccCceecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHHHHHh-
Q 020619 182 VHDLVVLSGGHTIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILR- 260 (323)
Q Consensus 182 ~~d~VaLsGaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~- 260 (323)
++|||||+||||||++|. +||+++ ..++| .||.+|||+||+|++
T Consensus 164 ~~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll~ 208 (328)
T cd00692 164 PDELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIETLL 208 (328)
T ss_pred HHHHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHHHH
Confidence 999999999999999982 366664 13577 699999999999987
Q ss_pred hccc-------------------cchhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhhcCCCCCCCCCcccccCc
Q 020619 261 QNKG-------------------MFQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLGAVGVLTGTSGEIRKKCN 320 (323)
Q Consensus 261 ~~~g-------------------ll~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~ 320 (323)
.+++ +|+||++|+.|++|+.+|++||. |++|+++|++||+||++|||. +..+.+|+
T Consensus 209 ~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs 284 (328)
T cd00692 209 KGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCS 284 (328)
T ss_pred cCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCc
Confidence 4554 49999999999999999999999 999999999999999999987 34778999
Q ss_pred cCC
Q 020619 321 VVN 323 (323)
Q Consensus 321 ~~n 323 (323)
.|+
T Consensus 285 ~v~ 287 (328)
T cd00692 285 DVI 287 (328)
T ss_pred ccC
Confidence 875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=9.5e-64 Score=463.18 Aligned_cols=219 Identities=24% Similarity=0.357 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhHhhhccccc-------CCCCcceeccCCCCCccccCCCCCCCCc-chhHHHHHHHHH
Q 020619 38 EDIVQKIIWKNVALNSTLPAKFLRMHFHDCFV-------RGCDASVLIDSTASNSAEKDSIPNQTVG-GFDVIEEVKTEL 109 (323)
Q Consensus 38 e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgSill~~~~~~~~E~~~~~N~~l~-g~~~I~~iK~~l 109 (323)
.+-++..+.+.+ .+...+|.+|||+||||.+ +||||||++. .|+++++|.||+ ++++|++||+++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~ 89 (251)
T PLN02879 17 VQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF 89 (251)
T ss_pred HHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc
Confidence 345677788876 4568999999999999974 7999999874 599999999997 999999999998
Q ss_pred HhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHCCCCcccceecc
Q 020619 110 EKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLS 189 (323)
Q Consensus 110 e~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLs 189 (323)
++||||||||||||+||+.+ |||.|+|++||+|+..+++ +++||.|+.++++|++.|++|||+++|||||+
T Consensus 90 -----~~VScADilalAa~~AV~~~-GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALs 160 (251)
T PLN02879 90 -----PILSYADFYQLAGVVAVEIT-GGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALS 160 (251)
T ss_pred -----CCcCHHHHHHHHHHHHHHhc-CCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeee
Confidence 58999999999999999999 9999999999999998754 56899999999999999999999999999999
Q ss_pred cCceecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHHHHHhhc--ccc--
Q 020619 190 GGHTIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQN--KGM-- 265 (323)
Q Consensus 190 GaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~--~gl-- 265 (323)
||||||++||. | ++|.| .| | .||.+|||+||++|+.+ +|+
T Consensus 161 GaHTiG~ah~~----r-~g~~g------------------------~~------d-~tp~~FDN~Yy~~ll~~~~~gll~ 204 (251)
T PLN02879 161 GGHTLGRCHKE----R-SGFEG------------------------AW------T-PNPLIFDNSYFKEILSGEKEGLLQ 204 (251)
T ss_pred ccccccccccc----c-ccCCC------------------------CC------C-CCccceeHHHHHHHHcCCcCCCcc
Confidence 99999999995 3 23322 12 2 68999999999999998 888
Q ss_pred chhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhhcCCCC
Q 020619 266 FQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLGAVGVL 308 (323)
Q Consensus 266 l~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lgv~ 308 (323)
|+||++|+.|++|+++|++||. |++||++|++||+||++||+.
T Consensus 205 L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 205 LPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred chhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 6899999999999999999999 999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=4.3e-59 Score=434.58 Aligned_cols=223 Identities=28% Similarity=0.445 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhcccccC--------CCCcceeccCCCCCccccCCCCCCCC-cchhHHHHHHHHHH
Q 020619 40 IVQKIIWKNVALNSTLPAKFLRMHFHDCFVR--------GCDASVLIDSTASNSAEKDSIPNQTV-GGFDVIEEVKTELE 110 (323)
Q Consensus 40 iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~--------GcDgSill~~~~~~~~E~~~~~N~~l-~g~~~I~~iK~~le 110 (323)
.|++.|++.+.+++++++++|||+||||++. ||||||++++ |+++++|.+| +++++|+.||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999999996 9999999973 9999999997 89999999999999
Q ss_pred hhCCCcccHHHHHHhhhhhhhhhcC-CCCcceecCCCccCCCCc--ccccccCCCCCCCCHHHHHHHHHHCCCCccccee
Q 020619 111 KKCPGIVSCADIVALATRDSVSFQF-EKPLWEVLTGRRDGRISL--VSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVV 187 (323)
Q Consensus 111 ~~cp~~VScADilalAar~aV~~~~-GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~Va 187 (323)
. |++|||||||++|+++||+.++ |||.|+|++||+|+..++ ...+.+.+|.|+.+++++++.|+++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 8999999999999999999986 899999999999999764 3344567888888999999999999999999999
Q ss_pred cc-cCcee-cccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHHHHHhhcc--
Q 020619 188 LS-GGHTI-GVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNK-- 263 (323)
Q Consensus 188 Ls-GaHTi-G~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~-- 263 (323)
|+ ||||| |++||..+..|+ |+ +|..||.+|||+||++++.++
T Consensus 154 L~~GaHti~G~~~~~~~~~~~------------------------~~----------~~~~tp~~fDN~yy~~l~~~~~~ 199 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG------------------------SG----------LWTSTPFTFDNAYFKNLLDMNWE 199 (255)
T ss_pred hccCCeeccCcccCCCCCccc------------------------CC----------CCCCCCCccchHHHHHHhcCCcc
Confidence 99 99999 999998876654 21 233799999999999999988
Q ss_pred --------------ccchhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhhc
Q 020619 264 --------------GMFQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLGA 304 (323)
Q Consensus 264 --------------gll~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~ 304 (323)
++|+||++|+.|++|+.+|++||. ++.|+++|++||+||++
T Consensus 200 ~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 200 WRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999 99999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.7e-56 Score=434.63 Aligned_cols=266 Identities=20% Similarity=0.228 Sum_probs=230.2
Q ss_pred cccCChhH-HHHHHHHHHHHHHhC--------CCchhhhhHhhhccccc-------CCCC-cceeccCCCCCccccCCCC
Q 020619 30 YKETCPEA-EDIVQKIIWKNVALN--------STLPAKFLRMHFHDCFV-------RGCD-ASVLIDSTASNSAEKDSIP 92 (323)
Q Consensus 30 y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~ 92 (323)
|.+.+-.+ .+.|+++|++.+... ...+|.+|||+|||+.+ +|++ |+|.+. +|++++.
T Consensus 35 ~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~ 108 (409)
T cd00649 35 YAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPD 108 (409)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHh
Confidence 44444333 368899999999865 37999999999999986 6886 888776 5999999
Q ss_pred CCCC-cchhHHHHHHHHHHhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCccc----------------
Q 020619 93 NQTV-GGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVS---------------- 155 (323)
Q Consensus 93 N~~l-~g~~~I~~iK~~le~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~---------------- 155 (323)
|.+| +++.+++.||+++ |..||+||+|+||+.+||+.+ |||.|++.+||.|...+...
T Consensus 109 N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~-Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~ 183 (409)
T cd00649 109 NVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESM-GFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYS 183 (409)
T ss_pred hhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHc-CCCcccccCCCCccCCCccccccCcchhcccccccc
Confidence 9999 4899999999988 457999999999999999999 99999999999999754320
Q ss_pred -------------------cccc--CCCCCCCCHHHHHHHHHHCCCCcccceec-ccCceecccccccccccccccCCCC
Q 020619 156 -------------------EANS--QIPAPSFNFSRLKQSFASKGLTVHDLVVL-SGGHTIGVGHCNFFSRRLYNFTGKG 213 (323)
Q Consensus 156 -------------------~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~d~VaL-sGaHTiG~~hc~~f~~Rl~nf~g~~ 213 (323)
.+++ .||+|..++++|++.|.+||||++||||| +||||||++||.+|.+||.
T Consensus 184 ~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg------ 257 (409)
T cd00649 184 GDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG------ 257 (409)
T ss_pred cchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC------
Confidence 0123 69999999999999999999999999999 5999999999999999982
Q ss_pred CCCCCCCHHHHHHHH--hcCCCCC-CCCcccccC---CCCCCccChHHHHHHhh--------------------------
Q 020619 214 DADPSLDSTYAAFLR--TKCRSLA-DNTTIVEMD---PGSGMDFDNNYYKILRQ-------------------------- 261 (323)
Q Consensus 214 ~~dp~~d~~~~~~L~--~~Cp~~~-~~~~~~~~D---~~tp~~FDN~Yy~~l~~-------------------------- 261 (323)
+||.+++.|++.|+ ..||.+. ..+.+..+| ..||.+|||+||++|+.
T Consensus 258 -~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~ 336 (409)
T cd00649 258 -PEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTV 336 (409)
T ss_pred -CCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccC
Confidence 69999999999995 8999743 233355788 47999999999999998
Q ss_pred ----------ccccchhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHh--hcCCCCCCCCC
Q 020619 262 ----------NKGMFQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERL--GAVGVLTGTSG 313 (323)
Q Consensus 262 ----------~~gll~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km--~~lgv~tg~~G 313 (323)
+.+||+||++|+.|++|+++|++||+ +++||++|++||+|| +.+|+++-..|
T Consensus 337 ~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 337 PDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred CCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 56899999999999999999999999 999999999999999 68999875544
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.8e-53 Score=436.86 Aligned_cols=261 Identities=20% Similarity=0.224 Sum_probs=225.0
Q ss_pred cccCChhH-HHHHHHHHHHHHHhC--------CCchhhhhHhhhccccc-------CCC-CcceeccCCCCCccccCCCC
Q 020619 30 YKETCPEA-EDIVQKIIWKNVALN--------STLPAKFLRMHFHDCFV-------RGC-DASVLIDSTASNSAEKDSIP 92 (323)
Q Consensus 30 y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~Gc-DgSill~~~~~~~~E~~~~~ 92 (323)
|.+.+-.+ .+.||++|++.+... ...+|.+|||+||++.+ +|| .|+|.+. +|++++.
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~ 118 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPD 118 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchh
Confidence 44444332 357899999999875 37999999999999987 688 5888776 5999999
Q ss_pred CCCC-cchhHHHHHHHHHHhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCc------------------
Q 020619 93 NQTV-GGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISL------------------ 153 (323)
Q Consensus 93 N~~l-~g~~~I~~iK~~le~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~------------------ 153 (323)
|.+| +++.+++.||++ ||++|||||||+||+++||+.+ |||.|+|.+||+|+..+.
T Consensus 119 N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~-Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~ 193 (716)
T TIGR00198 119 NVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESM-GLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSRED 193 (716)
T ss_pred hhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHh-CCCccCCCCCCCCCCCcccccccccccchhhccccc
Confidence 9999 588999999885 7899999999999999999999 999999999999994321
Q ss_pred -------------------ccccccCCCCCCCCHHHHHHHHHHCCCCcccceecc-cCceecccccccccccccccCCCC
Q 020619 154 -------------------VSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLS-GGHTIGVGHCNFFSRRLYNFTGKG 213 (323)
Q Consensus 154 -------------------~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLs-GaHTiG~~hc~~f~~Rl~nf~g~~ 213 (323)
+..+ ..+|+|..++++|++.|++||||++|||||+ ||||||++||.+|.+||
T Consensus 194 ~~~l~~p~a~~~~Gliyvnpeg~-~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl------- 265 (716)
T TIGR00198 194 RESLENPLAATEMGLIYVNPEGP-DGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI------- 265 (716)
T ss_pred cccccccchhhhccccccCcccc-cCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------
Confidence 1121 2699999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCHHHHHHHHhcCCCC---CCCCcccccC---CCCCCccChHHHHHHhhc-------------------------
Q 020619 214 DADPSLDSTYAAFLRTKCRSL---ADNTTIVEMD---PGSGMDFDNNYYKILRQN------------------------- 262 (323)
Q Consensus 214 ~~dp~~d~~~~~~L~~~Cp~~---~~~~~~~~~D---~~tp~~FDN~Yy~~l~~~------------------------- 262 (323)
++||++++.|++.|+..||.+ +..+.+..+| ..||.+|||+||+||+..
T Consensus 266 g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~ 345 (716)
T TIGR00198 266 GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPD 345 (716)
T ss_pred CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccccccc
Confidence 379999999999999999852 2223356677 579999999999999975
Q ss_pred ---------cccchhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhh--cCCCCC
Q 020619 263 ---------KGMFQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLG--AVGVLT 309 (323)
Q Consensus 263 ---------~gll~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~--~lgv~t 309 (323)
.++|+||++|..|++++++|++||. ++.|+++|++||+||+ .+|++.
T Consensus 346 ~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 346 VEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred ccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 6899999999999999999999999 9999999999999998 566654
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.5e-50 Score=409.84 Aligned_cols=262 Identities=19% Similarity=0.232 Sum_probs=224.9
Q ss_pred cccCChhH-HHHHHHHHHHHHHhC--------CCchhhhhHhhhccccc-------CCCC-cceeccCCCCCccccCCCC
Q 020619 30 YKETCPEA-EDIVQKIIWKNVALN--------STLPAKFLRMHFHDCFV-------RGCD-ASVLIDSTASNSAEKDSIP 92 (323)
Q Consensus 30 y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~ 92 (323)
|.+.+-.. .+.||++|.+.+... ...+|.+|||+||++.+ +||+ |+|.+. +|++++.
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------pe~~w~~ 120 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------PLNSWPD 120 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------ccccchh
Confidence 44444332 357999999999865 37999999999999986 6885 788775 5999999
Q ss_pred CCCC-cchhHHHHHHHHHHhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcc-----------------
Q 020619 93 NQTV-GGFDVIEEVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLV----------------- 154 (323)
Q Consensus 93 N~~l-~g~~~I~~iK~~le~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~----------------- 154 (323)
|.+| ++..++++||+++ |..||+||+|+||+.+|||.+ |||.|++..||.|...+..
T Consensus 121 N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~-Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~ 195 (726)
T PRK15061 121 NVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESM-GFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERY 195 (726)
T ss_pred hhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHc-CCCccCcCCCCCCCcCCccccccCcccccccccccc
Confidence 9999 5899999999998 457999999999999999999 9999999999999865432
Q ss_pred ----------------------cccccCCCCCCCCHHHHHHHHHHCCCCcccceecc-cCceecccccccccccccccCC
Q 020619 155 ----------------------SEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLS-GGHTIGVGHCNFFSRRLYNFTG 211 (323)
Q Consensus 155 ----------------------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLs-GaHTiG~~hc~~f~~Rl~nf~g 211 (323)
+.+ ..+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+||
T Consensus 196 ~~~~~l~~pl~a~~mgliyvnpegp-~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl----- 269 (726)
T PRK15061 196 SGERDLENPLAAVQMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV----- 269 (726)
T ss_pred ccccccccchhhhhccceecCCCCC-CCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-----
Confidence 111 2389999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCCCHHHHHHHH--hcCCCCC-CCCcccccC---CCCCCccChHHHHHHhhc-----------------------
Q 020619 212 KGDADPSLDSTYAAFLR--TKCRSLA-DNTTIVEMD---PGSGMDFDNNYYKILRQN----------------------- 262 (323)
Q Consensus 212 ~~~~dp~~d~~~~~~L~--~~Cp~~~-~~~~~~~~D---~~tp~~FDN~Yy~~l~~~----------------------- 262 (323)
++||.+++.+++.|. ..||.+. ..+.+..+| ..||.+|||+||++|+.+
T Consensus 270 --gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~ 347 (726)
T PRK15061 270 --GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAED 347 (726)
T ss_pred --CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccc
Confidence 379999999999985 8999742 233455677 579999999999999985
Q ss_pred -------------cccchhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhh--cCCCCCC
Q 020619 263 -------------KGMFQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLG--AVGVLTG 310 (323)
Q Consensus 263 -------------~gll~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~--~lgv~tg 310 (323)
.+||+||++|..||+++++|++||. +++|+++|++||+||+ .+|+++-
T Consensus 348 ~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 348 TVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred cCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 5899999999999999999999999 9999999999999994 4666543
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=5.1e-51 Score=378.08 Aligned_cols=214 Identities=24% Similarity=0.312 Sum_probs=179.0
Q ss_pred HHHHHhCCCchhhhhHhhhcccc-------cCCCCcceeccCCCCCccccC-CCCCCCCcchhHHHHHHHHHHhhCCCcc
Q 020619 46 WKNVALNSTLPAKFLRMHFHDCF-------VRGCDASVLIDSTASNSAEKD-SIPNQTVGGFDVIEEVKTELEKKCPGIV 117 (323)
Q Consensus 46 ~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~~~~E~~-~~~N~~l~g~~~I~~iK~~le~~cp~~V 117 (323)
..+...+++++++||||+||||| ++||||||+++.. .+|+. .+.|.+|++|+.|+.+ +|
T Consensus 32 ~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~----------~V 98 (264)
T cd08201 32 DCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP----------RS 98 (264)
T ss_pred ccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccC----------cc
Confidence 34455788999999999999999 8999999999742 36877 5566688888887553 69
Q ss_pred cHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHCCCCcccceeccc-Cceecc
Q 020619 118 SCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLVSEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLSG-GHTIGV 196 (323)
Q Consensus 118 ScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLsG-aHTiG~ 196 (323)
|||||||||+|+||+.+ |||.|+|++||+|++++.+. .||.|+.++++|++.|++|||+++|||+|+| |||||+
T Consensus 99 ScADiialAa~~AV~~~-GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ 173 (264)
T cd08201 99 SMADLIAMGVVTSVASC-GGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGG 173 (264)
T ss_pred CHHHHHHHHHHHHHHHc-CCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeee
Confidence 99999999999999999 99999999999999988764 4999999999999999999999999999995 999999
Q ss_pred cccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCccChHHHHHHhhccc----------cc
Q 020619 197 GHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDFDNNYYKILRQNKG----------MF 266 (323)
Q Consensus 197 ~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~g----------ll 266 (323)
+||..|.+++- |.. ..+...++| .||.+|||+||.+++.+.. .+
T Consensus 174 ahc~~f~~~~~---------~g~----------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~ 227 (264)
T cd08201 174 VHSEDFPEIVP---------PGS----------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTT 227 (264)
T ss_pred cccccchhhcC---------Ccc----------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCc
Confidence 99998876641 100 001134566 7999999999999998742 36
Q ss_pred hhhhhhccCcchHHHHHHhcChhHHHHHHHHHHHHhhc
Q 020619 267 QSDAALLTDNGASNIVDELLDPAKFFTEFAQSMERLGA 304 (323)
Q Consensus 267 ~SD~~L~~d~~t~~~V~~yA~~~~F~~~Fa~Am~Km~~ 304 (323)
.||..++..+... .++..|+++.|.+.++..+.||.+
T Consensus 228 ~sd~r~f~~d~n~-t~~~l~~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 228 NSDLRIFSSDGNV-TMNELASPDTFQKTCADILQRMID 264 (264)
T ss_pred cchhhheecCccH-HHHHhcChHHHHHHHHHHHHHHhC
Confidence 8999999866554 367788888899999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.4e-39 Score=305.26 Aligned_cols=219 Identities=16% Similarity=0.181 Sum_probs=179.1
Q ss_pred HHHHHHHHhCCCchhhhhHhhhccccc-------CCCCcc-eeccCCCCCccccCCCCCCC--C-cchhHHHHHHHHHHh
Q 020619 43 KIIWKNVALNSTLPAKFLRMHFHDCFV-------RGCDAS-VLIDSTASNSAEKDSIPNQT--V-GGFDVIEEVKTELEK 111 (323)
Q Consensus 43 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~~--l-~g~~~I~~iK~~le~ 111 (323)
+.+++.+.......+.+|||+||++.+ +|++|+ |.|. +|++++.|.+ | +.+.++++||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 567777777778999999999999986 799999 7665 5999999998 8 489999999999842
Q ss_pred h-CC-CcccHHHHHHhhhhhhhhhcCCC-----CcceecCCCccCCCCccccc--ccCCCCCC------------CCHHH
Q 020619 112 K-CP-GIVSCADIVALATRDSVSFQFEK-----PLWEVLTGRRDGRISLVSEA--NSQIPAPS------------FNFSR 170 (323)
Q Consensus 112 ~-cp-~~VScADilalAar~aV~~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~ 170 (323)
. -+ ..||+||+|+||+..|||.+ || |.|++.+||.|...+..... ...+|.+. ...+.
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~a-gg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKA-AKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHH-HhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHH
Confidence 1 12 26999999999999999999 99 99999999999987643211 11234332 23578
Q ss_pred HHHHHHHCCCCcccceecccCc-eecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCC
Q 020619 171 LKQSFASKGLTVHDLVVLSGGH-TIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGM 249 (323)
Q Consensus 171 l~~~F~~~Gl~~~d~VaLsGaH-TiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~ 249 (323)
|++.|.+||||++|||||+||| ++|+.|..+ +. +.|+ .+|.
T Consensus 170 Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~------------------------G~wT-------~~p~ 211 (297)
T cd08200 170 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KH------------------------GVFT-------DRPG 211 (297)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCC-------CC------------------------CCCc-------CCCC
Confidence 9999999999999999999997 799887432 11 1244 6899
Q ss_pred ccChHHHHHHhhcc--------------------c-----cchhhhhhccCcchHHHHHHhcC---hhHHHHHHHHHHHH
Q 020619 250 DFDNNYYKILRQNK--------------------G-----MFQSDAALLTDNGASNIVDELLD---PAKFFTEFAQSMER 301 (323)
Q Consensus 250 ~FDN~Yy~~l~~~~--------------------g-----ll~SD~~L~~d~~t~~~V~~yA~---~~~F~~~Fa~Am~K 301 (323)
+|||.||+||++.. | .+.+|.+|..|++.|++|+.||. |++||+||++||.|
T Consensus 212 ~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~K 291 (297)
T cd08200 212 VLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTK 291 (297)
T ss_pred ccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 99999999999520 1 26789999999999999999998 78999999999999
Q ss_pred hhcCC
Q 020619 302 LGAVG 306 (323)
Q Consensus 302 m~~lg 306 (323)
|+++.
T Consensus 292 lmeld 296 (297)
T cd08200 292 VMNLD 296 (297)
T ss_pred HHhcC
Confidence 99874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.5e-34 Score=297.42 Aligned_cols=220 Identities=18% Similarity=0.211 Sum_probs=176.6
Q ss_pred HHHHHHHHH---HHhCCCchhhhhHhhhccccc-------CCCCcc-eeccCCCCCccccCCCCC--CCC-cchhHHHHH
Q 020619 40 IVQKIIWKN---VALNSTLPAKFLRMHFHDCFV-------RGCDAS-VLIDSTASNSAEKDSIPN--QTV-GGFDVIEEV 105 (323)
Q Consensus 40 iVr~~v~~~---~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N--~~l-~g~~~I~~i 105 (323)
+|+++|... +....-..+.||||+||++.+ +|++|+ |.|. +|++++.| .+| +.+.+++.|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHH
Confidence 446666554 445566789999999999986 799998 8776 59999999 788 589999999
Q ss_pred HHHHHhhCCCcccHHHHHHhhhhhhhhhcC--CCC--cceecCCCccCCCCcccccccCCC---C------------CCC
Q 020619 106 KTELEKKCPGIVSCADIVALATRDSVSFQF--EKP--LWEVLTGRRDGRISLVSEANSQIP---A------------PSF 166 (323)
Q Consensus 106 K~~le~~cp~~VScADilalAar~aV~~~~--GGP--~~~v~~GR~D~~~s~~~~~~~~lP---~------------p~~ 166 (323)
|+++.. ..||+||+|+||+..|||.+. ||| .+++.+||.|...... +++...| . ...
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCC
Confidence 999842 279999999999999999984 797 5788899999987642 2222222 1 122
Q ss_pred CHHHHHHHHHHCCCCcccceecccC-ceecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCC
Q 020619 167 NFSRLKQSFASKGLTVHDLVVLSGG-HTIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDP 245 (323)
Q Consensus 167 ~~~~l~~~F~~~Gl~~~d~VaLsGa-HTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~ 245 (323)
..+.|++.|.++|||++|||||+|| |++|++|..++ . +.|+
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~------------------------G~~T------- 620 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------H------------------------GVFT------- 620 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC-------C------------------------CCCc-------
Confidence 3567889999999999999999999 59999985321 1 1243
Q ss_pred CCCCccChHHHHHHhhcc--------------------c---c--chhhhhhccCcchHHHHHHhcC-h--hHHHHHHHH
Q 020619 246 GSGMDFDNNYYKILRQNK--------------------G---M--FQSDAALLTDNGASNIVDELLD-P--AKFFTEFAQ 297 (323)
Q Consensus 246 ~tp~~FDN~Yy~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~V~~yA~-~--~~F~~~Fa~ 297 (323)
.+|.+|||.||+||++.. | + ..+|.+|..|++.|++|+.||+ + ++||+||++
T Consensus 621 ~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~ 700 (716)
T TIGR00198 621 DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVA 700 (716)
T ss_pred CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHH
Confidence 689999999999999721 1 2 2789999999999999999999 5 899999999
Q ss_pred HHHHhhcCCC
Q 020619 298 SMERLGAVGV 307 (323)
Q Consensus 298 Am~Km~~lgv 307 (323)
||.|+++++-
T Consensus 701 Aw~Klm~ldr 710 (716)
T TIGR00198 701 AWTKVMNLDR 710 (716)
T ss_pred HHHHHHhCCC
Confidence 9999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=7.8e-34 Score=290.86 Aligned_cols=220 Identities=15% Similarity=0.169 Sum_probs=179.6
Q ss_pred HHHHHHHHhCCCchhhhhHhhhccccc-------CCCCcc-eeccCCCCCccccCCCCCC--CC-cchhHHHHHHHHHHh
Q 020619 43 KIIWKNVALNSTLPAKFLRMHFHDCFV-------RGCDAS-VLIDSTASNSAEKDSIPNQ--TV-GGFDVIEEVKTELEK 111 (323)
Q Consensus 43 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~--~l-~g~~~I~~iK~~le~ 111 (323)
..+++.+....-..+.|||++||++.+ +|++|+ |.|. +|++++.|. +| +.+++++.||+++..
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 466677777777899999999999986 799998 8776 599999999 88 489999999999864
Q ss_pred hC--CCcccHHHHHHhhhhhhhhhcC--CC--CcceecCCCccCCCCcccccc---cCCCCCC------------CCHHH
Q 020619 112 KC--PGIVSCADIVALATRDSVSFQF--EK--PLWEVLTGRRDGRISLVSEAN---SQIPAPS------------FNFSR 170 (323)
Q Consensus 112 ~c--p~~VScADilalAar~aV~~~~--GG--P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~ 170 (323)
.- ...||+||+|+||+..|||.+. || |.+++.+||.|.+.... +++ ..+|.+. ...+.
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHH
Confidence 32 2369999999999999999983 47 99999999999987532 222 2356532 23478
Q ss_pred HHHHHHHCCCCcccceecccCc-eecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCC
Q 020619 171 LKQSFASKGLTVHDLVVLSGGH-TIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGM 249 (323)
Q Consensus 171 l~~~F~~~Gl~~~d~VaLsGaH-TiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~ 249 (323)
|++.|.++|||++|||||+||| ++|+.|-.++ . +.|+ .+|.
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~------------------------G~~T-------~~p~ 636 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------H------------------------GVFT-------DRPG 636 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCCC-------C------------------------CCCc-------CCCC
Confidence 9999999999999999999997 7888874321 0 1243 5899
Q ss_pred ccChHHHHHHhhcc--------------------c---c--chhhhhhccCcchHHHHHHhcC---hhHHHHHHHHHHHH
Q 020619 250 DFDNNYYKILRQNK--------------------G---M--FQSDAALLTDNGASNIVDELLD---PAKFFTEFAQSMER 301 (323)
Q Consensus 250 ~FDN~Yy~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~V~~yA~---~~~F~~~Fa~Am~K 301 (323)
+|||.||+||++.. | + +.+|..|..|++.|++|+.||+ +++||+||++||.|
T Consensus 637 ~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~K 716 (726)
T PRK15061 637 VLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTK 716 (726)
T ss_pred ccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 99999999999521 1 1 4789999999999999999998 88999999999999
Q ss_pred hhcCCC
Q 020619 302 LGAVGV 307 (323)
Q Consensus 302 m~~lgv 307 (323)
+++++-
T Consensus 717 vmeldr 722 (726)
T PRK15061 717 VMNLDR 722 (726)
T ss_pred HHhCCC
Confidence 999873
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=254.47 Aligned_cols=249 Identities=18% Similarity=0.200 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHhCC--------CchhhhhHhhhccccc-------CCCCcceeccCCCCCccccCCCCCCCC-cchhHHH
Q 020619 40 IVQKIIWKNVALNS--------TLPAKFLRMHFHDCFV-------RGCDASVLIDSTASNSAEKDSIPNQTV-GGFDVIE 103 (323)
Q Consensus 40 iVr~~v~~~~~~~~--------~~aa~llRL~FHDcfv-------~GcDgSill~~~~~~~~E~~~~~N~~l-~g~~~I~ 103 (323)
.|+..+...+.... ..+|-+|||+||-+++ +|..+ ...+|.++.++|.|.+| +++.++.
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~-----G~qRFaPlnSWPDN~nLDKarRLLW 145 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGG-----GQQRFAPLNSWPDNANLDKARRLLW 145 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCC-----CceecccccCCCcccchHHHHHHhh
Confidence 45566666665532 5899999999999986 23322 12345678999999999 5999999
Q ss_pred HHHHHHHhhCCCcccHHHHHHhhhhhhhhhcCCCCcceecCCCccCCCCcc-----------------------------
Q 020619 104 EVKTELEKKCPGIVSCADIVALATRDSVSFQFEKPLWEVLTGRRDGRISLV----------------------------- 154 (323)
Q Consensus 104 ~iK~~le~~cp~~VScADilalAar~aV~~~~GGP~~~v~~GR~D~~~s~~----------------------------- 154 (323)
.||+++ +..+|+||+|.||+.+|++.+ |++.+.+..||.|-..+..
T Consensus 146 PIKkKY----G~kiSWaDL~iLaGnvAlEsM-GfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaav 220 (730)
T COG0376 146 PIKKKY----GRKISWADLIILAGNVALESM-GFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAV 220 (730)
T ss_pred hHhHhh----cccccHhHhhhhhchhhhhhc-CCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhh
Confidence 999998 568999999999999999999 9999999999999766543
Q ss_pred ---------cccccCCCCCCCCHHHHHHHHHHCCCCcccceecc-cCceecccccccccccccccCCCCCCCCCCCHHHH
Q 020619 155 ---------SEANSQIPAPSFNFSRLKQSFASKGLTVHDLVVLS-GGHTIGVGHCNFFSRRLYNFTGKGDADPSLDSTYA 224 (323)
Q Consensus 155 ---------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d~VaLs-GaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~ 224 (323)
.++ +..|+|..+..+++..|+||+++++|.|||+ ||||+|++|...-.+- -+++|.-.+--.
T Consensus 221 qMGLIYVNPEGp-ng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~-------vg~ePe~a~ie~ 292 (730)
T COG0376 221 QMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASN-------VGPEPEAAPIEQ 292 (730)
T ss_pred eeeeEEeCCCCC-CCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhh-------cCCCccccchhh
Confidence 222 4589999999999999999999999999998 6999999997642221 246676555555
Q ss_pred HHH--HhcCCCCC-CCCccccc---CCCCCCccChHHHHHHhhcc-----------------------------------
Q 020619 225 AFL--RTKCRSLA-DNTTIVEM---DPGSGMDFDNNYYKILRQNK----------------------------------- 263 (323)
Q Consensus 225 ~~L--~~~Cp~~~-~~~~~~~~---D~~tp~~FDN~Yy~~l~~~~----------------------------------- 263 (323)
+.| +..|..+. .++.+..+ -..||++|||+||.+|+...
T Consensus 293 qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p 372 (730)
T COG0376 293 QGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGP 372 (730)
T ss_pred hccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCc
Confidence 544 34444322 12222222 23699999999999999631
Q ss_pred ccchhhhhhccCcchHHHHHHhcC-hhHHHHHHHHHHHHhhcCC
Q 020619 264 GMFQSDAALLTDNGASNIVDELLD-PAKFFTEFAQSMERLGAVG 306 (323)
Q Consensus 264 gll~SD~~L~~d~~t~~~V~~yA~-~~~F~~~Fa~Am~Km~~lg 306 (323)
.||.+|.+|--||..++|.++|.+ ++.|.+.|++||.||..-+
T Consensus 373 ~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 373 MMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred eeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 489999999999999999999999 9999999999999998643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.9e-12 Score=126.04 Aligned_cols=215 Identities=17% Similarity=0.211 Sum_probs=154.8
Q ss_pred HHHHHHHHhCCCchhhhhHhhhccccc-------CCCCcc-eeccCCCCCccccCCCCCC--CC-cchhHHHHHHHHHHh
Q 020619 43 KIIWKNVALNSTLPAKFLRMHFHDCFV-------RGCDAS-VLIDSTASNSAEKDSIPNQ--TV-GGFDVIEEVKTELEK 111 (323)
Q Consensus 43 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~--~l-~g~~~I~~iK~~le~ 111 (323)
..++..+....-....|+-.+|-.+-+ +|.+|. |.|. +.++++.|. -| +-+.+++.|.+...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 356666667777788999999988765 566654 4454 478999997 45 47889999988886
Q ss_pred hCCCcccHHHHHHhhhhhhhhhcC--CCCcce--ecCCCccCCCCcccccccC--C-CC------------CCCCHHHHH
Q 020619 112 KCPGIVSCADIVALATRDSVSFQF--EKPLWE--VLTGRRDGRISLVSEANSQ--I-PA------------PSFNFSRLK 172 (323)
Q Consensus 112 ~cp~~VScADilalAar~aV~~~~--GGP~~~--v~~GR~D~~~s~~~~~~~~--l-P~------------p~~~~~~l~ 172 (323)
..||.||+|+|++..+|+.+. +|-.+. +..||.|+...... ++.. | |- ....-+-|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 479999999999999999764 676654 45799999765321 1111 1 11 111244567
Q ss_pred HHHHHCCCCcccceecccCc-eecccccccccccccccCCCCCCCCCCCHHHHHHHHhcCCCCCCCCcccccCCCCCCcc
Q 020619 173 QSFASKGLTVHDLVVLSGGH-TIGVGHCNFFSRRLYNFTGKGDADPSLDSTYAAFLRTKCRSLADNTTIVEMDPGSGMDF 251 (323)
Q Consensus 173 ~~F~~~Gl~~~d~VaLsGaH-TiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~F 251 (323)
+.-+-.+||..||++|.||- -+|.- |.|+ ...+.. ..|..+
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n-----------~g~s-------------------------~~GVfT--~~pg~L 642 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGAN-----------YGGS-------------------------KHGVFT--DRPGVL 642 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccC-----------CCCC-------------------------ccceec--cCcccc
Confidence 88888999999999999875 33332 2221 112222 367888
Q ss_pred ChHHHHHHhhcc--------------------cc-----chhhhhhccCcchHHHHHHhcC---hhHHHHHHHHHHHHhh
Q 020619 252 DNNYYKILRQNK--------------------GM-----FQSDAALLTDNGASNIVDELLD---PAKFFTEFAQSMERLG 303 (323)
Q Consensus 252 DN~Yy~~l~~~~--------------------gl-----l~SD~~L~~d~~t~~~V~~yA~---~~~F~~~Fa~Am~Km~ 303 (323)
.|.||.||++-. |- -..|..+-.++..|.+.+.||+ ++.|.+||++||.|..
T Consensus 643 tndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVM 722 (730)
T COG0376 643 TNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVM 722 (730)
T ss_pred cchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 888888888631 21 2467777788999999999997 8999999999999999
Q ss_pred cCC
Q 020619 304 AVG 306 (323)
Q Consensus 304 ~lg 306 (323)
++.
T Consensus 723 n~D 725 (730)
T COG0376 723 NLD 725 (730)
T ss_pred ccc
Confidence 875
No 19
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.57 E-value=14 Score=28.11 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhccc
Q 020619 40 IVQKIIWKNVALNSTLPAKFLRMHFHDC 67 (323)
Q Consensus 40 iVr~~v~~~~~~~~~~aa~llRL~FHDc 67 (323)
|.|+.+.+.++++|.+-...||+.+--.
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999988654
No 20
>PRK01844 hypothetical protein; Provisional
Probab=51.21 E-value=21 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhccc
Q 020619 40 IVQKIIWKNVALNSTLPAKFLRMHFHDC 67 (323)
Q Consensus 40 iVr~~v~~~~~~~~~~aa~llRL~FHDc 67 (323)
+.|+.+++.++++|.+-...||..+--.
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QM 51 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQM 51 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999887644
No 21
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=46.24 E-value=18 Score=28.27 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 020619 290 KFFTEFAQSMERLGAVGVL 308 (323)
Q Consensus 290 ~F~~~Fa~Am~Km~~lgv~ 308 (323)
...+.|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3567899999999999863
No 22
>PRK00523 hypothetical protein; Provisional
Probab=42.18 E-value=38 Score=25.93 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhccc
Q 020619 40 IVQKIIWKNVALNSTLPAKFLRMHFHDC 67 (323)
Q Consensus 40 iVr~~v~~~~~~~~~~aa~llRL~FHDc 67 (323)
+-|..+++.++++|.+-...||..+--.
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QM 52 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQM 52 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHh
Confidence 8899999999999999999999887644
No 23
>PF15240 Pro-rich: Proline-rich
Probab=33.63 E-value=31 Score=30.95 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhccCCCCc
Q 020619 8 FLISLVALLLGACRGGGLGK 27 (323)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~ 27 (323)
|||+|.++||+|+++-.+..
T Consensus 2 LlVLLSvALLALSSAQ~~dE 21 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDE 21 (179)
T ss_pred hhHHHHHHHHHhhhcccccc
Confidence 67778788888887654443
No 24
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.04 E-value=1.1e+02 Score=22.94 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhccc
Q 020619 40 IVQKIIWKNVALNSTLPAKFLRMHFHDC 67 (323)
Q Consensus 40 iVr~~v~~~~~~~~~~aa~llRL~FHDc 67 (323)
+.|..+++.++++|.+-...||..+--.
T Consensus 17 ~ar~~~~k~l~~NPpine~mir~M~~QM 44 (64)
T PF03672_consen 17 IARKYMEKQLKENPPINEKMIRAMMMQM 44 (64)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 7788999999999999999999887644
No 25
>PTZ00411 transaldolase-like protein; Provisional
Probab=23.68 E-value=52 Score=32.36 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=28.0
Q ss_pred CCCcceecCCCccCCCCcccccccCCCCC---CCCHHHHHHHHHHCCCCc
Q 020619 136 EKPLWEVLTGRRDGRISLVSEANSQIPAP---SFNFSRLKQSFASKGLTV 182 (323)
Q Consensus 136 GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~~ 182 (323)
|-..+..+.||.+...-.+.......+.. -..+.++.+.|++.|+..
T Consensus 181 Ga~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 181 GVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred CCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 77788999999865422221111111111 134777888999999864
No 26
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=21.12 E-value=66 Score=27.55 Aligned_cols=31 Identities=32% Similarity=0.362 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCCccccee-cccCceecccc
Q 020619 168 FSRLKQSFASKGLTVHDLVV-LSGGHTIGVGH 198 (323)
Q Consensus 168 ~~~l~~~F~~~Gl~~~d~Va-LsGaHTiG~~h 198 (323)
+.+-+-.|+++||++.++=+ |--+|-||++.
T Consensus 33 vkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 33 VKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 44555689999999999755 45899999876
Done!