Query 020620
Match_columns 323
No_of_seqs 188 out of 1282
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8f_A Poly(A) RNA polymerase 100.0 1.3E-58 4.3E-63 442.0 25.9 285 3-315 40-345 (405)
2 3pq1_A Poly(A) RNA polymerase; 100.0 3.9E-56 1.3E-60 426.6 24.7 260 3-275 130-408 (464)
3 4fh3_A Poly(A) RNA polymerase 100.0 8.9E-56 3E-60 417.0 25.4 282 6-314 15-316 (349)
4 3nyb_A Poly(A) RNA polymerase 100.0 5E-56 1.7E-60 413.3 22.8 256 4-312 18-279 (323)
5 3hj4_A Minor editosome-associa 100.0 6E-56 2E-60 414.6 20.0 296 1-315 1-348 (384)
6 2ikf_A RNA uridylyl transferas 100.0 2.4E-54 8.2E-59 407.1 23.0 284 5-315 26-332 (353)
7 2b4v_A RNA editing complex pro 100.0 1.1E-51 3.7E-56 398.4 22.8 274 4-314 17-420 (468)
8 1q79_A Poly(A) polymerase alph 100.0 3.1E-41 1E-45 328.6 23.9 244 7-315 38-332 (514)
9 2hhp_A Poly(A) polymerase; tem 100.0 9.6E-41 3.3E-45 326.2 24.8 245 6-315 24-319 (530)
10 1r89_A TRNA nucleotidyltransfe 99.6 5.4E-15 1.9E-19 140.4 18.3 167 7-191 3-182 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.5 3.6E-12 1.2E-16 119.4 19.6 183 10-195 10-243 (349)
12 4at7_A Interleukin enhancer-bi 98.5 5.5E-06 1.9E-10 76.0 16.0 180 5-195 25-230 (364)
13 1no5_A Hypothetical protein HI 98.0 3.7E-05 1.3E-09 59.8 9.3 42 32-75 14-55 (114)
14 1ylq_A Putative nucleotidyltra 97.7 2.4E-05 8.3E-10 58.9 4.1 43 31-75 3-46 (96)
15 2rff_A Putative nucleotidyltra 97.5 7.4E-05 2.5E-09 57.8 4.0 51 25-75 9-61 (111)
16 1wot_A Putative minimal nucleo 97.4 0.00013 4.4E-09 55.0 4.6 29 47-75 25-53 (98)
17 4at7_B NF90, interleukin enhan 96.6 0.036 1.2E-06 51.3 13.8 166 15-195 20-264 (383)
18 4ebj_A Aminoglycoside nucleoti 96.5 0.0013 4.4E-08 57.4 3.3 51 26-76 17-69 (272)
19 1kny_A Kntase, kanamycin nucle 96.1 0.0021 7E-08 56.9 2.1 47 30-76 14-60 (253)
20 2fmp_A DNA polymerase beta; nu 93.8 0.48 1.6E-05 43.4 11.1 133 27-172 154-292 (335)
21 2bcq_A DNA polymerase lambda; 93.3 0.37 1.3E-05 44.1 9.4 128 28-172 152-286 (335)
22 3jz0_A Lincosamide nucleotidyl 90.5 0.27 9.4E-06 44.0 4.9 53 20-75 16-69 (287)
23 3b0x_A DNA polymerase beta fam 81.5 9 0.00031 37.5 10.7 116 29-172 164-279 (575)
24 1jms_A Terminal deoxynucleotid 79.6 5.4 0.00018 37.0 7.9 68 28-104 179-246 (381)
25 1jaj_A DNA polymerase beta-lik 79.0 2 7E-05 35.3 4.3 105 45-172 29-136 (174)
26 2ihm_A POL MU, DNA polymerase 78.3 2.8 9.4E-05 38.7 5.5 68 27-105 158-225 (360)
27 2pbe_A AAD6, aminoglycoside 6- 76.7 8.6 0.0003 34.2 8.2 43 30-75 8-53 (294)
28 2nrk_A Hypothetical protein GR 41.0 1.4E+02 0.0048 24.0 9.0 128 21-169 12-144 (173)
29 2kng_A Protein LSR2; DNA-bindi 35.5 31 0.001 22.5 2.8 26 159-184 15-40 (55)
30 1v4a_A Glutamate-ammonia-ligas 32.7 39 0.0013 31.7 4.4 29 47-75 154-182 (440)
31 3er9_B Poly(A) polymerase cata 31.7 71 0.0024 29.5 5.6 107 7-130 137-253 (479)
32 2fcl_A Hypothetical protein TM 31.1 26 0.00089 28.3 2.5 44 28-72 15-61 (169)
33 3k7d_A Glutamate-ammonia-ligas 29.1 57 0.0019 31.2 4.8 30 47-76 234-263 (498)
No 1
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.3e-58 Score=442.01 Aligned_cols=285 Identities=21% Similarity=0.326 Sum_probs=236.8
Q ss_pred CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCccccc
Q 020620 3 SYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSA 82 (323)
Q Consensus 3 ~~~~L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~ 82 (323)
..+.|+++|.+|+++++||++|.+.|+++++.|++++++. +|++++.+|||+++|+++|+||||+++..+....
T Consensus 40 ~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~--~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~---- 113 (405)
T 4e8f_A 40 SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI--SPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ---- 113 (405)
T ss_dssp SCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEESHHHHTCCBSSCCEEEEEECCC-------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCC----
Confidence 3567999999999999999999999999999999999997 7899999999999999999999999999875321
Q ss_pred chhhHHHHHHHHHHHHHhcCCcceEEEeccCCcceEEEE-EcCC----CeeEEEeecCchhhhhhHHHHHHhccchhhHH
Q 020620 83 GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFE-TIHQ----NISCDISIDNLCGQIKSKFLFWISQIDGRFRD 157 (323)
Q Consensus 83 ~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIik~~-~~~~----~i~~DIs~~n~~g~~~s~li~~~~~~~~~~~~ 157 (323)
..+++.++++.|++. ..+++.|.+||||||||. +..+ |++||||++|..|+.+|.|++.|.+.+|++|+
T Consensus 114 ----~~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~~~p~~r~ 187 (405)
T 4e8f_A 114 ----SDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKP 187 (405)
T ss_dssp ----CTTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHH
T ss_pred ----HHHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHhhCHHHHH
Confidence 123778888888876 557888999999999999 8777 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHH-hcCCCCCCCchhhhcCCCCCCcccccccchhhhhHhhhhccccc
Q 020620 158 MVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHF-QTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIAR 236 (323)
Q Consensus 158 L~~~iK~w~k~~~l~~~~~G~lssy~l~lmvi~fl-q~~~p~~lP~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 236 (323)
|++++|+||+++||++++.||||||+|++||++|| |...||+||+||++.+.... ...|+...+.. .
T Consensus 188 Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~-~~~g~~~~f~~-----------~ 255 (405)
T 4e8f_A 188 MVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEK-IVDGFDVGFDD-----------K 255 (405)
T ss_dssp HHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCC-EETTEECCCCC-----------C
T ss_pred HHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhccccccc-ccCCeeecccc-----------c
Confidence 99999999999999999999999999999999999 76789999999998764211 11111111000 0
Q ss_pred ccccccCCCCcccHHHHHHHHHHhhh-cCcccccccccccc-cCceeeccccCCCCC-------------CCCCeEEeCC
Q 020620 237 FSSDKYRKINRSSLAHLFVSFLEKFS-GLSLKASELGICPF-TGQWEHIRSNTRWLP-------------NNHPLFVNSP 301 (323)
Q Consensus 237 ~~~~~~~~~n~~sl~~Ll~~Ff~~Y~-~fdf~~~~~~I~~~-~g~~~~~~~~~~~~~-------------~~~~l~IeDP 301 (323)
....+.+.|..++|+||++||+||+ .||| .+.+||++ .|+.+.+ +.+.|.. ..+.||||||
T Consensus 256 -l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~--~~~vIsir~~g~~~~K-~~k~w~~~~~~~g~~~~~~~~~~~L~IeDP 331 (405)
T 4e8f_A 256 -LEDIPPSQNYSSLGSLLHGFFRFYAYKFEP--REKVVTFRRPDGYLTK-QEKGWTSATEHTGSADQIIKDRYILAIEDP 331 (405)
T ss_dssp -GGGSCCCSCCCCHHHHHHHHHHHHHHTCCT--TTBEECSSSTTCCCBH-HHHTCCC-------------CCCSSEEBCS
T ss_pred -hhhhccccccccHHHHHHHHHHHHhcccCC--CCcEEEEecCCccccc-ccccccccccccccccccccCCceEEEECC
Confidence 0112456788999999999999999 6777 47899999 6765532 2334532 3578999999
Q ss_pred CcCCCCcccccCcc
Q 020620 302 FPFRLLLIFCLPLT 315 (323)
Q Consensus 302 fd~~~Nv~~~~~~~ 315 (323)
|++++|+|++++..
T Consensus 332 f~~~~Nv~r~vs~~ 345 (405)
T 4e8f_A 332 FEISHNVGRTVSSS 345 (405)
T ss_dssp SSTTCBTTTTCCHH
T ss_pred CCcccccccCCCHH
Confidence 99999999998743
No 2
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-56 Score=426.62 Aligned_cols=260 Identities=23% Similarity=0.365 Sum_probs=202.0
Q ss_pred CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCccc--
Q 020620 3 SYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCIS-- 80 (323)
Q Consensus 3 ~~~~L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~-- 80 (323)
....|+++|.+|+++++||++|.+.|..++++|+++++.. ||+++|.+|||++||+++|+||||+++..+.....+
T Consensus 130 ~a~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~--fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~ 207 (464)
T 3pq1_A 130 YAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAY--FPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAH 207 (464)
T ss_dssp TSSSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTT--STTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCS
T ss_pred ccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEeCCCccCCCCCCCCeEEEEecCCccccccc
Confidence 3467999999999999999999999999999999999996 799999999999999999999999999876432110
Q ss_pred ---------------ccchhhHHHHHHHHHHHHHhc-CCcceEEEeccCCcceEEEEEcCCCeeEEEeecCchhhhhhHH
Q 020620 81 ---------------SAGKKVKQSLLGDLLRALRQK-GGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKF 144 (323)
Q Consensus 81 ---------------s~~~~~~~~~l~~l~~~L~~~-~~~~~v~~i~~ArVPIik~~~~~~~i~~DIs~~n~~g~~~s~l 144 (323)
...+...+++|+.+++.|++. +++.+++.|.+||||||||.+..+|++||||++|..|+.||+|
T Consensus 208 ~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~l 287 (464)
T 3pq1_A 208 KISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSEL 287 (464)
T ss_dssp CEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHH
T ss_pred ccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHH
Confidence 011223467899999999875 4688999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHCCCCCCCCCC-CChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCcccccccchh
Q 020620 145 LFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGT-FNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAE 223 (323)
Q Consensus 145 i~~~~~~~~~~~~L~~~iK~w~k~~~l~~~~~G~-lssy~l~lmvi~flq~~~p~~lP~l~~~~~~~~~~~~~~~~~~~e 223 (323)
++.|.+.+|++|+|++++|+||+.+||++++.|| ||||+|++|||+|||++.||+||+||++++..... +
T Consensus 288 l~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~---------~ 358 (464)
T 3pq1_A 288 LYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAE---------D 358 (464)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC----------
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcc---------c
Confidence 9999999999999999999999999999999998 99999999999999999999999999985321100 0
Q ss_pred hhhHhhhhcccccccccccCCCCcccHHHHHHHHHHhhhcCccccccccccc
Q 020620 224 RQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICP 275 (323)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~~Y~~fdf~~~~~~I~~ 275 (323)
..+.+.+++++.+-........|+.++++||.+||+||++|||+ +.+||+
T Consensus 359 ~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~--~~vIsI 408 (464)
T 3pq1_A 359 KCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXX--XXXXXX 408 (464)
T ss_dssp --------------------CCCCCCHHHHHHHHHHHGGGCCCC--CCCCCC
T ss_pred ceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCc--cccccc
Confidence 01111121111100001134678999999999999999999885 677776
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=8.9e-56 Score=416.99 Aligned_cols=282 Identities=21% Similarity=0.311 Sum_probs=219.9
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCcccccchh
Q 020620 6 VLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKK 85 (323)
Q Consensus 6 ~L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~~~~ 85 (323)
.|.+.+.+++++++||++|.+.|+++++.|++++++. +|+++|.+|||+++|+++|+||||+++..+...
T Consensus 15 el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~--~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~-------- 84 (349)
T 4fh3_A 15 EFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI--SPDAELVAFGSLESGLALKNSDMDLCVLMDSRV-------- 84 (349)
T ss_dssp HHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEESHHHHTCCBSSCCEEEEEECCTTS--------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeeccCCCCCCCCCEEEEEecCCCC--------
Confidence 4556666668999999999999999999999999997 799999999999999999999999999887532
Q ss_pred hHHHHHHHHHHHHHhcCCcceEEEeccCCcceEEEEEcC-----CCeeEEEeecCchhhhhhHHHHHHhccchhhHHHHH
Q 020620 86 VKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH-----QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVL 160 (323)
Q Consensus 86 ~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIik~~~~~-----~~i~~DIs~~n~~g~~~s~li~~~~~~~~~~~~L~~ 160 (323)
....+..++.+.+.+. ..+++.|.+||||||||.+.. +++.||||++|..|+++|++++.|...+|++|+|++
T Consensus 85 ~~~~~~~~~~~~~~~~--~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~~~~~~~~~~r~l~~ 162 (349)
T 4fh3_A 85 QSDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVL 162 (349)
T ss_dssp CHHHHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred ChHHHHHHHHHHHHhh--cccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHHHHHhhcCHHHHHHHH
Confidence 1223444444444432 346778899999999999863 689999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCchhhhcCCCCCCcccccccchhhhhHhhhhcccccccc
Q 020620 161 LVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC-VPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSS 239 (323)
Q Consensus 161 ~iK~w~k~~~l~~~~~G~lssy~l~lmvi~flq~~-~p~~lP~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 239 (323)
+||+||+++||++++.||||||+|++|||||||+. .||++|+++....... ....|+ +.+...-..
T Consensus 163 ~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~-~~~~~~------------~~~f~~~~~ 229 (349)
T 4fh3_A 163 LVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQE-KIVDGF------------DVGFDDKLE 229 (349)
T ss_dssp HHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCC-CEETTE------------ECCCCCCGG
T ss_pred HHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhcccccc-ccccCc------------ccccccchh
Confidence 99999999999999999999999999999999975 6899999875432211 011111 111111111
Q ss_pred cccCCCCcccHHHHHHHHHHhhhc-CcccccccccccccCceeeccccCCC-------------CCCCCCeEEeCCCcCC
Q 020620 240 DKYRKINRSSLAHLFVSFLEKFSG-LSLKASELGICPFTGQWEHIRSNTRW-------------LPNNHPLFVNSPFPFR 305 (323)
Q Consensus 240 ~~~~~~n~~sl~~Ll~~Ff~~Y~~-fdf~~~~~~I~~~~g~~~~~~~~~~~-------------~~~~~~l~IeDPfd~~ 305 (323)
....+.|..++|+||.+||+|||. ||| ...+||++.++....+....| ....+.|+|||||+++
T Consensus 230 ~~~~~~n~~slg~LL~~FF~~Y~~~Fd~--~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~ 307 (349)
T 4fh3_A 230 DIPPSQNYSSLGSLLHGFFRFYAYKFEP--REKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEIS 307 (349)
T ss_dssp GSCCCSCCCCHHHHHHHHHHHHHHTCCT--TTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTT
T ss_pred hcccccCcccHHHHHHHHHHHhhhccCC--CCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCC
Confidence 223467889999999999999994 676 578999886543222222222 1234689999999999
Q ss_pred CCcccccCc
Q 020620 306 LLLIFCLPL 314 (323)
Q Consensus 306 ~Nv~~~~~~ 314 (323)
+|+||+++.
T Consensus 308 ~Nvar~Vs~ 316 (349)
T 4fh3_A 308 HNVGRTVSS 316 (349)
T ss_dssp CBGGGGCCH
T ss_pred CcCCCCCCH
Confidence 999999874
No 4
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-56 Score=413.33 Aligned_cols=256 Identities=25% Similarity=0.364 Sum_probs=223.1
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCcccccc
Q 020620 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAG 83 (323)
Q Consensus 4 ~~~L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~~ 83 (323)
.+.|++||.+|++++.||++|.+.|+++++.|++++++. +|++++.+|||+++|+++|+||||+++..+...
T Consensus 18 ~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~--~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~------ 89 (323)
T 3nyb_A 18 SDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQL--WPDADLHVFGSYSTDLYLPGSDIDCVVTSELGG------ 89 (323)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTT--CTTCCEEEESTTTTTCCCTTSCEEEEECSSCCG------
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEeCccccCCCCCCCCceEEEecCCCC------
Confidence 467999999999999999999999999999999999996 699999999999999999999999999987532
Q ss_pred hhhHHHHHHHHHHHHHhcCCcceEEEeccCCcceEEEEEcCCCeeEEEeecCchhhhhhHHHHHHhccchhhHHHHHHHH
Q 020620 84 KKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK 163 (323)
Q Consensus 84 ~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIik~~~~~~~i~~DIs~~n~~g~~~s~li~~~~~~~~~~~~L~~~iK 163 (323)
.+..+.|..+++.|++.+.+.++++|.+||||||||.|..+|++||||++|..|+++|++++.|...+|++++|++++|
T Consensus 90 -~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK 168 (323)
T 3nyb_A 90 -KESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLIREWLDDTPGLRELVLIVK 168 (323)
T ss_dssp -GGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHHHHHHHSCTTHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1234688999999999888889999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCcccccccchhhhhHhhhhcccccccccccC
Q 020620 164 EWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR 243 (323)
Q Consensus 164 ~w~k~~~l~~~~~G~lssy~l~lmvi~flq~~~p~~lP~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (323)
+||+++||++++.||||||+|++||++|||++ |+++|. .
T Consensus 169 ~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~-p~~~~~-------~--------------------------------- 207 (323)
T 3nyb_A 169 QFLHARRLNNVHTGGLGGFSIICLVFSFLHMH-PRIITN-------E--------------------------------- 207 (323)
T ss_dssp HHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTC-HHHHTT-------C---------------------------------
T ss_pred HHHHHcCCCCccCCCcCHHHHHHHHHHHHHhC-CccCcc-------c---------------------------------
Confidence 99999999999999999999999999999997 333321 0
Q ss_pred CCCcccHHHHHHHHHHhhh-cCcccccccccccccCceeeccccCCCC-----CCCCCeEEeCCCcCCCCccccc
Q 020620 244 KINRSSLAHLFVSFLEKFS-GLSLKASELGICPFTGQWEHIRSNTRWL-----PNNHPLFVNSPFPFRLLLIFCL 312 (323)
Q Consensus 244 ~~n~~sl~~Ll~~Ff~~Y~-~fdf~~~~~~I~~~~g~~~~~~~~~~~~-----~~~~~l~IeDPfd~~~Nv~~~~ 312 (323)
..+..++|+||.+||+||| +||| .+.+||++.|+.....+ ..|. ...+.|||||||++++|+|++.
T Consensus 208 ~~~~~~lg~LL~~Ff~~Y~~~Fd~--~~~~Isv~~g~~~~~~k-~~~~~~~~~~~~~~l~IeDP~~~~~nigr~~ 279 (323)
T 3nyb_A 208 IDPKDNLGVLLIEFFELYGKNFGY--DDVALGSSDGYPVYFPK-STWSAIQPIKNPFSLAIQDPGDESNNISRGS 279 (323)
T ss_dssp BCGGGCHHHHHHHHHHHHHHTCCT--TTEEEEESSSCEEEEEG-GGCGGGCSCSCSSSCCBEETTEEEEETTTTC
T ss_pred CCccccHHHHHHHHHHHhccccCC--CCcEEEEecCCcceeeH-HhcccccccCCCceEEEeCCCCCCcccccch
Confidence 0134689999999999999 6777 47899999876432211 1342 1347899999999999999973
No 5
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=6e-56 Score=414.62 Aligned_cols=296 Identities=21% Similarity=0.247 Sum_probs=226.1
Q ss_pred CCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCcc-
Q 020620 1 MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCI- 79 (323)
Q Consensus 1 ~~~~~~L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~- 79 (323)
|+.-..|++||.+|+++++||++|.+.|.+++++|++++++. +|++++.+|||+++|+++|+||||+++..++....
T Consensus 1 ~~~~~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~--~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~ 78 (384)
T 3hj4_A 1 MVAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLA--VNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWL 78 (384)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHH--STTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGG
T ss_pred CcchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccc
Confidence 556678999999999999999999999999999999999997 79999999999999999999999999998754321
Q ss_pred cccchhhHHHHHH--HHHHHHHhcCCcceEEEeccCCcceEEEEEcCCCeeEEEeecCchhhhhhHHHHHHhcc-chhhH
Q 020620 80 SSAGKKVKQSLLG--DLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQI-DGRFR 156 (323)
Q Consensus 80 ~s~~~~~~~~~l~--~l~~~L~~~~~~~~v~~i~~ArVPIik~~~~~~~i~~DIs~~n~~g~~~s~li~~~~~~-~~~~~ 156 (323)
....+...+..++ ++++.+.. ..+..+. |.+||||||||.|..+|++||||++|..|+.||++++.|.+. +++++
T Consensus 79 ~~~~~~~~~~~lrll~L~k~~~~-~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y~~~~p~rlr 156 (384)
T 3hj4_A 79 QGMERVDEQNNKRMTRFGKEASA-MGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYG 156 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH-HTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccchhhHHHHHHHHHHHhhccc-CCeeEEe-ecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHHHhcCcHHHH
Confidence 1111212222222 13333332 3456666 459999999999999999999999999999999999999999 66899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCcccccccchhhhhHhhhhccccc
Q 020620 157 DMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIAR 236 (323)
Q Consensus 157 ~L~~~iK~w~k~~~l~~~~~G~lssy~l~lmvi~flq~~~p~~lP~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 236 (323)
+|++++|+||+++||++++.||||||+|++|||+|||++ ++||+||++.+... ... . .+.. .. .+...
T Consensus 157 ~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~--~vLP~Lq~~~~~~~--~~~---~-~~~~--~~--~~~~~ 224 (384)
T 3hj4_A 157 AYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQEL--GLLPVFSKPTGEFG--ELT---V-ADAE--ML--LQEFK 224 (384)
T ss_dssp HHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHH--TSSCCCCCCCSTTS--CCC---H-HHHH--HH--HTTCC
T ss_pred HHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcC--CCCCccccccccCC--ccc---c-cccH--hh--hhhhc
Confidence 999999999999999999999999999999999999998 89999999654311 100 0 0000 00 11111
Q ss_pred ccc-cccCCCCcccHHHH----HHHHHHhhhcCcccccccccccccCcee---------------eccc-----------
Q 020620 237 FSS-DKYRKINRSSLAHL----FVSFLEKFSGLSLKASELGICPFTGQWE---------------HIRS----------- 285 (323)
Q Consensus 237 ~~~-~~~~~~n~~sl~~L----l~~Ff~~Y~~fdf~~~~~~I~~~~g~~~---------------~~~~----------- 285 (323)
... .+..+.|+++||+| |++||+||+.|||+ +.+||++..+.. ..|+
T Consensus 225 l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~--~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 302 (384)
T 3hj4_A 225 LPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFS--AGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEH 302 (384)
T ss_dssp CCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTT--TBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCC--CCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhcc
Confidence 111 12347789999999 99999999988885 688887642211 0111
Q ss_pred ---cC--------------CCCCCCCCeEEeCCCcCCCCcccccCcc
Q 020620 286 ---NT--------------RWLPNNHPLFVNSPFPFRLLLIFCLPLT 315 (323)
Q Consensus 286 ---~~--------------~~~~~~~~l~IeDPfd~~~Nv~~~~~~~ 315 (323)
+. ...|.++...||| |+..+|+||.++-+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 348 (384)
T 3hj4_A 303 KEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQAS 348 (384)
T ss_dssp GGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGG
T ss_pred ccCCCCCCCccccccCccccccccccceeeee-eccccccceecCcc
Confidence 10 1235689999999 99999999998743
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=2.4e-54 Score=407.11 Aligned_cols=284 Identities=17% Similarity=0.173 Sum_probs=228.7
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCcc-CCCCCCCCCcceEEecCCC----Ccc
Q 020620 5 NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFV-SNLFSRWGDLDISIELSNG----SCI 79 (323)
Q Consensus 5 ~~L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~-tgl~~~~SDiDl~i~~~~~----~~~ 79 (323)
..|+++|.++++...++.+|.+.|++++++|++++++. +|+++|.+|||++ +|+++|+||||+++..+.. ...
T Consensus 26 ~~l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~--~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~ 103 (353)
T 2ikf_A 26 AVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAV--DPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGG 103 (353)
T ss_dssp HHHHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHH--CTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH--CCCcEEEEecCccccCCCCCCcceeEEEeecccccccccc
Confidence 45889999999999999999999999999999999997 7999999999996 9999999999999987631 000
Q ss_pred ccc---chhhHHHHHHHHHHHHHhcCCcceEEEeccCCcceEEEEEcCCCeeEEEeecCchhhhhhHHHHHHhccchhhH
Q 020620 80 SSA---GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFR 156 (323)
Q Consensus 80 ~s~---~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIik~~~~~~~i~~DIs~~n~~g~~~s~li~~~~~~~~~~~ 156 (323)
... .+....++|.++++.|++.+.+.+++.|.+||||||||.+ ++|++||||++|..|+.+|++++.|.+.+|++|
T Consensus 104 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~-~~~i~~Dis~~n~~g~~~t~ll~~~~~~~p~~r 182 (353)
T 2ikf_A 104 DAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG-GGAVDFDITAYRRNGVRNSALLRAYFEQNPPCR 182 (353)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC-SSSCEEEEEESCCHHHHHHHHHHHHHHHSTTHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc-CCCcEEEEEecCccHHHHHHHHHHHHHhCccHH
Confidence 000 0112356889999999988888899999999999999999 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCChHHHHHHHHHHHhcC-CCCCCCchhhhcCCCCCCcccccccchhhhhHhhhhccc
Q 020620 157 DMVLLVKEWAKAHDINNPKT-GTFNSYSLSLLVLFHFQTC-VPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNI 234 (323)
Q Consensus 157 ~L~~~iK~w~k~~~l~~~~~-G~lssy~l~lmvi~flq~~-~p~~lP~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 234 (323)
+|+++||+||+++||++++. ||||||+|++||++|||+. .||++|+++.... ++.+.
T Consensus 183 ~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~-----~~~~~---------------- 241 (353)
T 2ikf_A 183 WLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVS-----RVEPL---------------- 241 (353)
T ss_dssp HHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGG-----GSCSS----------------
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChh-----hccCC----------------
Confidence 99999999999999999999 9999999999999999875 6889998864211 11100
Q ss_pred ccccccccCCCCcccHHHHHHHHHHhhh-cCcccccccccccccCceeeccccCCCC------------CCCCCeEEeCC
Q 020620 235 ARFSSDKYRKINRSSLAHLFVSFLEKFS-GLSLKASELGICPFTGQWEHIRSNTRWL------------PNNHPLFVNSP 301 (323)
Q Consensus 235 ~~~~~~~~~~~n~~sl~~Ll~~Ff~~Y~-~fdf~~~~~~I~~~~g~~~~~~~~~~~~------------~~~~~l~IeDP 301 (323)
..+........|..++|+||.+||+||+ .||| .+.+||++.|+...+ +...|. +..+.|+||||
T Consensus 242 ~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~--~~~vIsi~~~~~~~k-~~~~w~~~~~~~~~~~~~~~~~~l~IeDP 318 (353)
T 2ikf_A 242 PPHLPLEEPADEGLELGTQVLDFLHFFLHEFDS--DKQVISLNRPGITTK-EELDWTKSAEDFARMNGEKVHYQWCIEDP 318 (353)
T ss_dssp CCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCT--TTEEECSSSSSCEEH-HHHTCSHHHHTTCEETTEECCCSSEEBCS
T ss_pred CcCCccccCCCCcccHHHHHHHHHHHhccccCc--CceEEEcCCCcceec-hhhcccccccccccccCCCCcceEEEECC
Confidence 0011112234678999999999999999 6777 478999988776542 233453 24578999999
Q ss_pred CcCCCCcccccCcc
Q 020620 302 FPFRLLLIFCLPLT 315 (323)
Q Consensus 302 fd~~~Nv~~~~~~~ 315 (323)
|++++|+|++++..
T Consensus 319 ~~~~~N~~r~v~~~ 332 (353)
T 2ikf_A 319 YELNLNVGRNVTPL 332 (353)
T ss_dssp SSTTCBTTTTCCHH
T ss_pred CCCCCcccCCCCHH
Confidence 99999999998843
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.1e-51 Score=398.42 Aligned_cols=274 Identities=17% Similarity=0.194 Sum_probs=219.5
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCc-cCCCCCCCCCcceEEecCCCCccccc
Q 020620 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSF-VSNLFSRWGDLDISIELSNGSCISSA 82 (323)
Q Consensus 4 ~~~L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~-~tgl~~~~SDiDl~i~~~~~~~~~s~ 82 (323)
+..|+..|.+......+++++.+.|.+++++|+.++++. +|+++|++|||+ .+|+++|+||||+++..++. ...
T Consensus 17 ~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~--~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~-~~~-- 91 (468)
T 2b4v_A 17 YAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKW--TPDAKVYCCGSMVTYGQMERGSDLDLACMFDDP-YPS-- 91 (468)
T ss_dssp HHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEETHHHHHSSCBTTCCEEEEEECSSS-SCC--
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH--CCCcEEEEeeCchhcCCCCCCCceeEEEecCCC-Ccc--
Confidence 457888999999999999999999999999999999997 799999999999 69999999999999998732 111
Q ss_pred chhhHHHHHHHHHHHHHhc-CC--cceEEEeccCCcceEEEE----Ec--------------------------------
Q 020620 83 GKKVKQSLLGDLLRALRQK-GG--YRRLQFVAHARVPILKFE----TI-------------------------------- 123 (323)
Q Consensus 83 ~~~~~~~~l~~l~~~L~~~-~~--~~~v~~i~~ArVPIik~~----~~-------------------------------- 123 (323)
.......+.++++.|++. ++ +.++++|.+||||||||. ++
T Consensus 92 -~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 170 (468)
T 2b4v_A 92 -HEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDN 170 (468)
T ss_dssp -HHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHH
T ss_pred -chhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 111112345688888875 23 578999999999999997 21
Q ss_pred -----------------------------------------------------------------------CCCeeEEEe
Q 020620 124 -----------------------------------------------------------------------HQNISCDIS 132 (323)
Q Consensus 124 -----------------------------------------------------------------------~~~i~~DIs 132 (323)
.+|++||||
T Consensus 171 ~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DIS 250 (468)
T 2b4v_A 171 DVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDIS 250 (468)
T ss_dssp HHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEE
T ss_pred cccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccccceEEEEe
Confidence 147899999
Q ss_pred ecCchhhhhhHHHHHHhccchh-hHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC------CCCCCCchhh
Q 020620 133 IDNLCGQIKSKFLFWISQIDGR-FRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC------VPAILPPLKD 205 (323)
Q Consensus 133 ~~n~~g~~~s~li~~~~~~~~~-~~~L~~~iK~w~k~~~l~~~~~G~lssy~l~lmvi~flq~~------~p~~lP~l~~ 205 (323)
++ ..|++||+|++.|.+.||+ +|+|+++||+||+++||++++.||||||+|++|||||||++ .|+++|++|+
T Consensus 251 fn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~ 329 (468)
T 2b4v_A 251 FV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAH 329 (468)
T ss_dssp SC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGG
T ss_pred cc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhh
Confidence 98 9999999999999999999 99999999999999999999999999999999999999986 3678888877
Q ss_pred hcCCCCCCcccccccchhhhhHhhhhcccccccccccCCCCcccHHHHHHHHHHhhh-cCcccccccccccccCceeecc
Q 020620 206 IYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFS-GLSLKASELGICPFTGQWEHIR 284 (323)
Q Consensus 206 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~~Y~-~fdf~~~~~~I~~~~g~~~~~~ 284 (323)
+.... + + .+....|..++|+||++||+||+ .||| .+.+||++.|+...+
T Consensus 330 l~~~~---~----------------------~--~p~~~~n~~sLg~LL~~FF~yYg~~Fd~--~~~vISir~g~~~~K- 379 (468)
T 2b4v_A 330 LPRYP---D----------------------F--SPLYDCDPTELGRLLHGFFIFYAHHFDY--EREVVSLNRNRRSYR- 379 (468)
T ss_dssp SCSSC---C----------------------C--CCCCCCCHHHHHHHHHHHHHHHHHSSCT--TTEEBCSSSSSCEEH-
T ss_pred ccccc---C----------------------C--CcccccCccCHHHHHHHHHHHHccccCC--CCcEEEecCCcceec-
Confidence 53210 0 0 01234578899999999999999 6777 478999998876643
Q ss_pred ccCCCCC-------CCCCeEEeCCCcC----CCCcccccCc
Q 020620 285 SNTRWLP-------NNHPLFVNSPFPF----RLLLIFCLPL 314 (323)
Q Consensus 285 ~~~~~~~-------~~~~l~IeDPfd~----~~Nv~~~~~~ 314 (323)
+...|.. ..++|||||||++ ++|+|++++.
T Consensus 380 ~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~ 420 (468)
T 2b4v_A 380 SDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHP 420 (468)
T ss_dssp HHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCH
T ss_pred ccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCH
Confidence 2334532 2358999999999 9999999863
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=3.1e-41 Score=328.65 Aligned_cols=244 Identities=20% Similarity=0.255 Sum_probs=202.4
Q ss_pred hHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhc--------------cCCCCEEEeecCccCCCCCCCCCcceE
Q 020620 7 LEPILKDILGM--LNPLREDWETRMKVISDLREVVESVE--------------SLRGATVEPFGSFVSNLFSRWGDLDIS 70 (323)
Q Consensus 7 L~~~i~~~~~~--~~pt~~e~~~R~~~~~~l~~~l~~~~--------------~~~~~~v~~fGS~~tgl~~~~SDiDl~ 70 (323)
++.+|.++++. +.||+||.+.|+++++.|++++++.. ..++++|.+|||+++|+++|+||||++
T Consensus 38 ~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~~ 117 (514)
T 1q79_A 38 LTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDAL 117 (514)
T ss_dssp HHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEEE
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCceeEE
Confidence 56677777766 88999999999999999999998521 136799999999999999999999999
Q ss_pred EecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCCcceEEEEEcCCCeeEEEeecCc--------------
Q 020620 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNL-------------- 136 (323)
Q Consensus 71 i~~~~~~~~~s~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIik~~~~~~~i~~DIs~~n~-------------- 136 (323)
+..|... ...+++..+.+.|++.+.+.+++.|.+|+||||||.. +|++|||++++.
T Consensus 118 ~v~p~~~--------~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~~p~~l~l~~~ 187 (514)
T 1q79_A 118 CVAPRHV--------DRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCF--DGIEIDILFARLALQTIPEDLDLRDD 187 (514)
T ss_dssp EEECTTS--------CHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSCSSBCTTCCTTCG
T ss_pred EecCCcC--------CHHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEE--CCeeEEEEEecCCcccCcccccCCch
Confidence 9987532 1345788889999988889999999999999999998 799999999752
Q ss_pred --------------hhhhhhHHHHHHhccchhhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCc
Q 020620 137 --------------CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPP 202 (323)
Q Consensus 137 --------------~g~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~~l~~~~~G~lssy~l~lmvi~flq~~~p~~lP~ 202 (323)
+|++.+++|..+...+++||.++++||+||++|||++++.||||||+|++||++++|.+ |
T Consensus 188 ~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~-P----- 261 (514)
T 1q79_A 188 SLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLY-P----- 261 (514)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHS-T-----
T ss_pred hhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhC-C-----
Confidence 46777888888888889999999999999999999999999999999999999999986 1
Q ss_pred hhhhcCCCCCCcccccccchhhhhHhhhhcccccccccccCCCCcccHHHHHHHHHHhhhcCcccccccccc-cccCcee
Q 020620 203 LKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGIC-PFTGQWE 281 (323)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~~Y~~fdf~~~~~~I~-~~~g~~~ 281 (323)
+.++++|+..||+||++|||.. -+.++ +..|..
T Consensus 262 --------------------------------------------~~s~~~LL~~FF~~y~~~dw~~-pV~l~~~~~~~l- 295 (514)
T 1q79_A 262 --------------------------------------------NAIASTLVHKFFLVFSKWEWPN-PVLLKQPEECNL- 295 (514)
T ss_dssp --------------------------------------------TCCHHHHHHHHHHHHHSCCTTS-CBCSSCCCCCSS-
T ss_pred --------------------------------------------CCCHHHHHHHHHHHHhcCCCCC-CeEecccCCCCC-
Confidence 1267899999999999998863 33333 333321
Q ss_pred eccccCCCCCC------CCCeEEeCCCcCCCCcccccCcc
Q 020620 282 HIRSNTRWLPN------NHPLFVNSPFPFRLLLIFCLPLT 315 (323)
Q Consensus 282 ~~~~~~~~~~~------~~~l~IeDPfd~~~Nv~~~~~~~ 315 (323)
....|.+. ...|+|+||+++.+|+|++++..
T Consensus 296 ---~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~s 332 (514)
T 1q79_A 296 ---NLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVS 332 (514)
T ss_dssp ---CCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHH
T ss_pred ---CCcccCCccCCcCcccceeEeCCCCCCCcccccCCHH
Confidence 12345443 35699999999999999998853
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=9.6e-41 Score=326.22 Aligned_cols=245 Identities=18% Similarity=0.237 Sum_probs=204.1
Q ss_pred chHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhc-------cCC-------CCEEEeecCccCCCCCCCCCcce
Q 020620 6 VLEPILKDILGM--LNPLREDWETRMKVISDLREVVESVE-------SLR-------GATVEPFGSFVSNLFSRWGDLDI 69 (323)
Q Consensus 6 ~L~~~i~~~~~~--~~pt~~e~~~R~~~~~~l~~~l~~~~-------~~~-------~~~v~~fGS~~tgl~~~~SDiDl 69 (323)
.++.+|.++++. +.||+||.+.|+++++.|++++++.. +.| +++|.+|||+++|+++|+||||+
T Consensus 24 ~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID~ 103 (530)
T 2hhp_A 24 KLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDT 103 (530)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEEE
T ss_pred hhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEecccccCCCCCCCceeE
Confidence 356777777776 88999999999999999999998721 122 79999999999999999999999
Q ss_pred EEecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCCcceEEEEEcCCCeeEEEeecCc-------------
Q 020620 70 SIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNL------------- 136 (323)
Q Consensus 70 ~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIik~~~~~~~i~~DIs~~n~------------- 136 (323)
++..|... ...+++..+.+.|++.+.+.+++.|.+|+||||||.. +|++|||++++.
T Consensus 104 ~v~~p~~~--------~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~ip~~l~l~~ 173 (530)
T 2hhp_A 104 LVVVPKHV--------TREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKF--SGISIDLICARLDQPQVPLSLTLSD 173 (530)
T ss_dssp EEEECTTC--------CHHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSSSCBCTTCCSCC
T ss_pred EEecCCcC--------CHHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEE--CCEeeEEEEeccccccCCcccCCCc
Confidence 99987532 1346888899999988889999999999999999998 799999999653
Q ss_pred ---------------hhhhhhHHHHHHhccchhhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC
Q 020620 137 ---------------CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201 (323)
Q Consensus 137 ---------------~g~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~~l~~~~~G~lssy~l~lmvi~flq~~~p~~lP 201 (323)
+|++.+++|..+...+++||.++++||+||++|||+++..||||||+|++||+++||.+ |
T Consensus 174 ~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~-P---- 248 (530)
T 2hhp_A 174 KNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLY-P---- 248 (530)
T ss_dssp GGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHS-T----
T ss_pred hhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcC-C----
Confidence 47788899999988889999999999999999999999999999999999999999985 1
Q ss_pred chhhhcCCCCCCcccccccchhhhhHhhhhcccccccccccCCCCcccHHHHHHHHHHhhhcCcccccccccccc-cCce
Q 020620 202 PLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPF-TGQW 280 (323)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~~Y~~fdf~~~~~~I~~~-~g~~ 280 (323)
+.++++|+..||+||++|||.. -+.+++. .|.
T Consensus 249 ---------------------------------------------~~s~~~LL~~FF~~y~~~dw~~-pV~l~~~~~g~- 281 (530)
T 2hhp_A 249 ---------------------------------------------NACSAVILNRFFIILSEWNWPQ-PVILKPIEDGP- 281 (530)
T ss_dssp ---------------------------------------------TCCHHHHHHHHHHHHHHCCTTS-CEESSCCCCCS-
T ss_pred ---------------------------------------------CCCHHHHHHHHHHHHhcCCCCC-ceEecccCCCC-
Confidence 1267899999999999988863 3334432 222
Q ss_pred eeccccCCCCCC------CCCeEEeCCCcCCCCcccccCcc
Q 020620 281 EHIRSNTRWLPN------NHPLFVNSPFPFRLLLIFCLPLT 315 (323)
Q Consensus 281 ~~~~~~~~~~~~------~~~l~IeDPfd~~~Nv~~~~~~~ 315 (323)
. ....|.|. ...|+|+||+++.+|+|++++..
T Consensus 282 ~---~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~s 319 (530)
T 2hhp_A 282 L---QVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITES 319 (530)
T ss_dssp S---CSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHH
T ss_pred c---cccccCcccCCCCCccceeEECCCCCCCccCccCCHH
Confidence 1 12346543 46899999999999999998743
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.64 E-value=5.4e-15 Score=140.37 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCC-CCcceEEecCCCCcccccchh
Q 020620 7 LEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRW-GDLDISIELSNGSCISSAGKK 85 (323)
Q Consensus 7 L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~-SDiDl~i~~~~~~~~~s~~~~ 85 (323)
+++.+.++++.+.|+++|.+.-..+.+.|.+.|++. ++++...||++.|+++++ ||||+.+..+.... +.
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~~----~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~-----~e 73 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDEL----GVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS-----KE 73 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH----TCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC-----HH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhC----CCeEEEeccccCCCcCCCCCCceEEEEcCCCCC-----HH
Confidence 577888999999999999999999999999999882 369999999999999986 79999999975421 11
Q ss_pred hHH-HHHHHHHHHHHhcCCcceEEEeccCCcceEEEEEcCCCeeEEE--eecC------chhhhhhHHHHHHhccchh-h
Q 020620 86 VKQ-SLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDI--SIDN------LCGQIKSKFLFWISQIDGR-F 155 (323)
Q Consensus 86 ~~~-~~l~~l~~~L~~~~~~~~v~~i~~ArVPIik~~~~~~~i~~DI--s~~n------~~g~~~s~li~~~~~~~~~-~ 155 (323)
+.. ..+..+.+.+++ .+ +..|..|-++... .|+++|| ++.- ..++..|.+-..|...... +
T Consensus 74 ~l~~~~l~~~~e~l~~------~~-~~ya~hpyV~~~f--~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~ 144 (437)
T 1r89_A 74 ELRERGLEIGKAVLDS------YE-IRYAEHPYVHGVV--KGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGK 144 (437)
T ss_dssp HHHHHHHHHHHHHSSS------EE-EEESSSEEEEEEE--TTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHH------hh-hhccCCceEEEEe--cceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhh
Confidence 111 123333333332 22 3467789888877 5999998 3322 2344445666677655322 8
Q ss_pred HHHHHHHHHHHHHCCCCCC--CCCCCChHHHHHHHHHH
Q 020620 156 RDMVLLVKEWAKAHDINNP--KTGTFNSYSLSLLVLFH 191 (323)
Q Consensus 156 ~~L~~~iK~w~k~~~l~~~--~~G~lssy~l~lmvi~f 191 (323)
+.+++++|+|.+..|++++ ..+|+|||.+.||+++|
T Consensus 145 ~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y 182 (437)
T 1r89_A 145 ENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY 182 (437)
T ss_dssp HHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH
Confidence 9999999999999999876 46889999999999984
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.46 E-value=3.6e-12 Score=119.36 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=109.3
Q ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhhccCCC-------CEEEeecCccCCCCCCC-CCcceEEecCCCCccc
Q 020620 10 ILKDIL-GMLNPLREDWETRMKVISDLREVVESVESLRG-------ATVEPFGSFVSNLFSRW-GDLDISIELSNGSCIS 80 (323)
Q Consensus 10 ~i~~~~-~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~-------~~v~~fGS~~tgl~~~~-SDiDl~i~~~~~~~~~ 80 (323)
.+..|+ +.+.|++++.+.-..+++.|.+.|++.. +.+ .++...||++.|+++++ ||+||++..+......
T Consensus 10 ~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~-~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~ 88 (349)
T 1px5_A 10 DLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERC-FQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFE 88 (349)
T ss_dssp GHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHT-TCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhh-cccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchh
Confidence 355555 7789999999999999999999998742 211 26778899999999985 7999999998532111
Q ss_pred ccchhhHHHHHHHHHHHHHhc---CCcc-eEEEec-cCCcce-EEEEEc----CCCeeEEE--eecCch-----------
Q 020620 81 SAGKKVKQSLLGDLLRALRQK---GGYR-RLQFVA-HARVPI-LKFETI----HQNISCDI--SIDNLC----------- 137 (323)
Q Consensus 81 s~~~~~~~~~l~~l~~~L~~~---~~~~-~v~~i~-~ArVPI-ik~~~~----~~~i~~DI--s~~n~~----------- 137 (323)
........++..+.+.|.+. ..+. ..++.. .-+.|- +.+... ..++++|| ++.+..
T Consensus 89 -~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~~~ 167 (349)
T 1px5_A 89 -DQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE 167 (349)
T ss_dssp -HHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCCHH
T ss_pred -hHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCChH
Confidence 11122346777887777652 2232 344321 113552 555432 25799996 334210
Q ss_pred ----hhh--------------hhHHHHHHh-ccchhhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 020620 138 ----GQI--------------KSKFLFWIS-QIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (323)
Q Consensus 138 ----g~~--------------~s~li~~~~-~~~~~~~~L~~~iK~w~k~~~l~~~~~G~lssy~l~lmvi~flq~~ 195 (323)
.+. .+.+-..+. .....++.|++++|+|.+..+.. ...++++||+|.+|+++...+.
T Consensus 168 ~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~~-~~~~~~ssy~lELL~~~a~e~~ 243 (349)
T 1px5_A 168 IYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKT-HGNKLPPQYALELLTVYAWEQG 243 (349)
T ss_dssp HHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTT-CSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhc-ccCCCCChHHHHHHHHHHHHhC
Confidence 010 023333333 33457899999999999887642 2346899999999999877664
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.45 E-value=5.5e-06 Score=76.02 Aligned_cols=180 Identities=12% Similarity=0.159 Sum_probs=120.3
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhccCCC------CEEEeecCccCCCCCCCC-CcceEEecCCCC
Q 020620 5 NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRG------ATVEPFGSFVSNLFSRWG-DLDISIELSNGS 77 (323)
Q Consensus 5 ~~L~~~i~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~------~~v~~fGS~~tgl~~~~S-DiDl~i~~~~~~ 77 (323)
..+.+.|.+=-+.+.||++|+..-..+++.|++++..+.--|+ ..|...||++.|+.++++ |+|+++++...+
T Consensus 25 ~~~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~lP 104 (364)
T 4at7_A 25 TSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILP 104 (364)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSCC
T ss_pred HHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCCC
Confidence 3577788887889999999999999999999999987532333 368889999999999988 999999987543
Q ss_pred cccccchhhHHHHHHHHHHHHHhcCCcceEEE--------eccCCcceEEEEEc-----------CCCeeEEEeecCchh
Q 020620 78 CISSAGKKVKQSLLGDLLRALRQKGGYRRLQF--------VAHARVPILKFETI-----------HQNISCDISIDNLCG 138 (323)
Q Consensus 78 ~~~s~~~~~~~~~l~~l~~~L~~~~~~~~v~~--------i~~ArVPIik~~~~-----------~~~i~~DIs~~n~~g 138 (323)
.+...+.+++++.+.|+....-..+.+ |..+. +.+++... ..-++...+.....+
T Consensus 105 -----T~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~~~~-~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaa 178 (364)
T 4at7_A 105 -----TLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSD-ATVKILITTVPPNLRKLDPELHLDIKVLQSALAA 178 (364)
T ss_dssp -----BHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEEECSS-CEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHhhhhccccceeeccCcceEEEecCC-CcEEEEEEeCChhhccCChhHhcCHHHHHHHHHH
Confidence 233344577888888876532111111 21221 11222210 011111123334456
Q ss_pred hhhhHHHHHHhccchhhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 020620 139 QIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (323)
Q Consensus 139 ~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~~l~~~~~G~lssy~l~lmvi~flq~~ 195 (323)
++++++++.-+. +..++.+++++|...++.. ..+.|+.|++.+++.+-+-..
T Consensus 179 lRhAkWfq~na~-~s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~ 230 (364)
T 4at7_A 179 IRHARWFEENAS-QSTVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNN 230 (364)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSS
T ss_pred hhhhHHHHhhcc-ccccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcC
Confidence 777777775443 4667899999999666652 236799999999998888764
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.98 E-value=3.7e-05 Score=59.78 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCC
Q 020620 32 ISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (323)
Q Consensus 32 ~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~ 75 (323)
++.+.+++++. .+..++.+|||++.|-+.++||||++|..+.
T Consensus 14 ~~~i~~~l~~~--~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 14 LAIVKTILQQL--VPDYTVWAFGSRVKGKAKKYSDLDLAIISEE 55 (114)
T ss_dssp HHHHHHHHHHH--CTTSEEEEEGGGTTTCCCTTCCEEEEEECSS
T ss_pred HHHHHHHHHHh--CCCCEEEEEeccCCCCCCCCCCeEEEEEeCC
Confidence 44566667663 3457999999999999999999999998864
No 14
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.72 E-value=2.4e-05 Score=58.88 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhccCCCCEEEeecCccCCCCCCC-CCcceEEecCC
Q 020620 31 VISDLREVVESVESLRGATVEPFGSFVSNLFSRW-GDLDISIELSN 75 (323)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~-SDiDl~i~~~~ 75 (323)
.++.+.+.+++. ++..++.+|||++.|-+.++ ||||+.+..+.
T Consensus 3 ~l~~i~~~l~~~--~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKD--VQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHH--CTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHH--cCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 356677777765 45589999999999999999 99999998763
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.50 E-value=7.4e-05 Score=57.83 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCC-CEEEeecCccCCCCCCCCCcceEEecCC
Q 020620 25 WETRMKVISDLREVVESVE-SLRG-ATVEPFGSFVSNLFSRWGDLDISIELSN 75 (323)
Q Consensus 25 ~~~R~~~~~~l~~~l~~~~-~~~~-~~v~~fGS~~tgl~~~~SDiDl~i~~~~ 75 (323)
...+..+++.+++++..+. .+++ ..+.+|||++.|-+.++||||+++..+.
T Consensus 9 ~~~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 9 IESQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 3455666666666666542 1445 5899999999999999999999998764
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.43 E-value=0.00013 Score=55.04 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.9
Q ss_pred CCEEEeecCccCCCCCCCCCcceEEecCC
Q 020620 47 GATVEPFGSFVSNLFSRWGDLDISIELSN 75 (323)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~i~~~~ 75 (323)
-..+.+|||++.|-+.++||||+++..+.
T Consensus 25 v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 25 AVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp CSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred CcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 46799999999999999999999997753
No 17
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=96.64 E-value=0.036 Score=51.27 Aligned_cols=166 Identities=15% Similarity=0.153 Sum_probs=98.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhccC---------C--------------------------C----CEEEeecC
Q 020620 15 LGMLNPLREDWETRMKVISDLREVVESVESL---------R--------------------------G----ATVEPFGS 55 (323)
Q Consensus 15 ~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~---------~--------------------------~----~~v~~fGS 55 (323)
...+-|+++|++..+.++..++.+|+.+-.+ . . .-|.-.|+
T Consensus 20 H~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~ 99 (383)
T 4at7_B 20 HSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGL 99 (383)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHH
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEece
Confidence 4568899999999999999999999854210 0 0 13555899
Q ss_pred ccCCCCCCCC-CcceEEecCCCCcccccchhhHHHHHHHHHHHHH----hcC-CcceEEE-eccCCcceEEEEEcCCCee
Q 020620 56 FVSNLFSRWG-DLDISIELSNGSCISSAGKKVKQSLLGDLLRALR----QKG-GYRRLQF-VAHARVPILKFETIHQNIS 128 (323)
Q Consensus 56 ~~tgl~~~~S-DiDl~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~----~~~-~~~~v~~-i~~ArVPIik~~~~~~~i~ 128 (323)
++.|+-+++- ++|+++++...+ ...+|.++++.|- ... .-..+.. ...|. |+--......+.
T Consensus 100 laKGlLLkGd~~veLVvlck~kP---------T~~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~--i~i~~~~~p~~~ 168 (383)
T 4at7_B 100 VAKGLLLKGDLDLELVLLCKEKP---------TTALLDKVADNLAIQLTTVTEDKYEILQSVDDAA--IVIKNTKEPPLS 168 (383)
T ss_dssp HHHTCCCTTCCEEEEEEEESSCC---------BHHHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTE--EEEECSSSSCCE
T ss_pred ecccceECCCCceeEEEEeCCCC---------cHHHHHHHHHHHHHHHhhccCCceEEeecCCcce--EEEecCCCCCeE
Confidence 9999999865 999999987533 2346666666554 311 1112221 22221 111111122355
Q ss_pred EEEeecCc---------------------------------hhhhhhHHHHHHhccchhhHHHHHHHHHHHHHCCCCCCC
Q 020620 129 CDISIDNL---------------------------------CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPK 175 (323)
Q Consensus 129 ~DIs~~n~---------------------------------~g~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~~l~~~~ 175 (323)
|-|++... .+++.+++++.-+..-+....+++++|...++.. .
T Consensus 169 v~I~lTSp~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~ 244 (383)
T 4at7_B 169 LTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----T 244 (383)
T ss_dssp EEEEEECHHHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----G
T ss_pred EEEEECCcccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----C
Confidence 55555332 1112222222111112346789999999666652 2
Q ss_pred CCCCChHHHHHHHHHHHhcC
Q 020620 176 TGTFNSYSLSLLVLFHFQTC 195 (323)
Q Consensus 176 ~G~lssy~l~lmvi~flq~~ 195 (323)
.+.|+.|++.+|+.+-+-..
T Consensus 245 ~~pL~~waLELL~~~ai~s~ 264 (383)
T 4at7_B 245 WGPLRGWPLELLCEKSIGTA 264 (383)
T ss_dssp GGGGTTHHHHHHHHHHHHTS
T ss_pred cCCCcHhHHHHHHHHHhhCC
Confidence 35799999999999888653
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=96.54 E-value=0.0013 Score=57.40 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhcc-CCC-CEEEeecCccCCCCCCCCCcceEEecCCC
Q 020620 26 ETRMKVISDLREVVESVES-LRG-ATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (323)
Q Consensus 26 ~~R~~~~~~l~~~l~~~~~-~~~-~~v~~fGS~~tgl~~~~SDiDl~i~~~~~ 76 (323)
..++.+.+.++++++.+.. +++ .++..|||++.|-+.++||||+.+.....
T Consensus 17 ~~~q~Vq~eL~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 17 LYFQGVQHTIARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred cChHHHHHHHHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 3444444444444443321 334 58999999999999999999999998753
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=96.08 E-value=0.0021 Score=56.94 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCC
Q 020620 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (323)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~ 76 (323)
.+++.+...+.+.++..-..+.+|||++.|-+.++||||+.|.....
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 14 KIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 34444444444322111367999999999999999999999987653
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.84 E-value=0.48 Score=43.42 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCcccccchhhHHHHHHHHHHHHHhcCCcce
Q 020620 27 TRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRR 106 (323)
Q Consensus 27 ~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~~~~~~~~ 106 (323)
.-..+.+.|.+.++.+ .|..++.+.||+.=|-.+ .+|||+.+..++..... .+ ...++..+.+.|.+.+.+..
T Consensus 154 ea~~ia~~i~~~l~~~--~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~--~~--~~~l~~~v~~~l~~~~~v~~ 226 (335)
T 2fmp_A 154 EMLQMQDIVLNEVKKV--DSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSES--TK--QPKLLHQVVEQLQKVHFITD 226 (335)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSC--BC--SSCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhc--CCCcEEEeccccccccCc-cCCeEEEEECCCccccc--cc--hhhhHHHHHHHHHhCCccee
Confidence 3345566667777775 578999999999877665 56999999877432110 00 11356777788887777666
Q ss_pred EEEeccCCcceE-EEEEcC-----CCeeEEEeecCchhhhhhHHHHHHhccchhhHHHHHHHHHHHHHCCCC
Q 020620 107 LQFVAHARVPIL-KFETIH-----QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (323)
Q Consensus 107 v~~i~~ArVPIi-k~~~~~-----~~i~~DIs~~n~~g~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~~l~ 172 (323)
+......+.-.+ ++.... .++.|||-+-...... +.|+.+=.+ +...+-++.||+.+|+.
T Consensus 227 ~l~~g~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~~-~aLl~fTGS-----~~fnr~lR~~A~~kG~k 292 (335)
T 2fmp_A 227 TLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYY-CGVLYFTGS-----DIFNKNMRAHALEKGFT 292 (335)
T ss_dssp EEEECSSEEEEEECCCCCTTCCCCCCEEEEEEECCGGGHH-HHHHHHHCC-----HHHHHHHHHHHHHTTEE
T ss_pred eeecCCceEEEEEEeCCcccccCCCceEEEEEEECHHHHH-HHHHHhhCC-----HHHHHHHHHHHHHcCCc
Confidence 554444443222 221111 2899999886544332 333332111 23346788899998874
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.29 E-value=0.37 Score=44.12 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceE
Q 020620 28 RMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRL 107 (323)
Q Consensus 28 R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~~~~~~~~v 107 (323)
-..+.+.|.+.++.+ .|..++.+-||+.=|-.+ .+|||+++..++... ...+|..+.+.|.+.+.+..+
T Consensus 152 a~~ia~~i~~~l~~~--~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~--------~~~ll~~v~~~l~~~~~i~~~ 220 (335)
T 2bcq_A 152 ATEIEQTVQKAAQAF--NSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRS--------HRGIFSRLLDSLRQEGFLTDD 220 (335)
T ss_dssp HHHHHHHHHHHHHTT--CTTCEEEECHHHHTTCSE-ESSEEEEEECTTSST--------TTTCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc--CCCcEEEEccccccCCCC-CCCeEEEEecCCchh--------hhhHHHHHHHHHHhCCchHHH
Confidence 345566677777775 578999999999877665 469999999775321 123677888888887766554
Q ss_pred EEecc--C-CcceEEE-EEc---CCCeeEEEeecCchhhhhhHHHHHHhccchhhHHHHHHHHHHHHHCCCC
Q 020620 108 QFVAH--A-RVPILKF-ETI---HQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (323)
Q Consensus 108 ~~i~~--A-rVPIik~-~~~---~~~i~~DIs~~n~~g~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~~l~ 172 (323)
..... . .--.+.+ ... ..++.|||-+-..... .+.++.+=.. +...+-++.||+.+|+.
T Consensus 221 l~~~~~~g~~~k~~~v~~l~~~~~~~~rVDl~~vp~~~~-g~ALl~fTGS-----~~fnr~lR~~A~~~G~k 286 (335)
T 2bcq_A 221 LVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEF-ACALLYFTGS-----AHFNRSMRALAKTKGMS 286 (335)
T ss_dssp EECCTTSTTCCEEEEEECCSSTTCCCEEEEEEECCGGGH-HHHHHHHHCC-----HHHHHHHHHHHHHTTCE
T ss_pred hhccccCCCCceEEEEEEccCCCCCceEEEEEEECHHHH-HHHHHHhhCC-----HHHHHHHHHHHHHcCCC
Confidence 33210 1 1112122 221 1689999988654433 2333332111 23346789999999874
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=90.47 E-value=0.27 Score=44.00 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCC-EEEeecCccCCCCCCCCCcceEEecCC
Q 020620 20 PLREDWETRMKVISDLREVVESVESLRGA-TVEPFGSFVSNLFSRWGDLDISIELSN 75 (323)
Q Consensus 20 pt~~e~~~R~~~~~~l~~~l~~~~~~~~~-~v~~fGS~~tgl~~~~SDiDl~i~~~~ 75 (323)
|.--.+...+++++.|.+.+++ .+.+ .|..+||.+.|-.-..||+|+++...+
T Consensus 16 ~~~~~m~~~~e~l~~I~~~~~~---d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 16 PRGSHMLKQKELIANVKNLTES---DERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp ------CHHHHHHHHHHHHHHH---CTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred CCCCCccCHHHHHHHHHHHHhc---CCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 3333345566778888888766 3554 688999999999999999999999865
No 23
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=81.46 E-value=9 Score=37.49 Aligned_cols=116 Identities=11% Similarity=0.151 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEE
Q 020620 29 MKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQ 108 (323)
Q Consensus 29 ~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~~~~~~~~v~ 108 (323)
..+.+.|.+.++.+ .+..++.+-||+.-|-.+ .+|||+++..++. . .+.+.|.+.+.+..+.
T Consensus 164 ~~~~~~i~~~l~~~--~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~-----------~----~v~~~l~~~~~~~~~~ 225 (575)
T 3b0x_A 164 LSLARSLLEAIRAL--PGVERAELCGSARRYKDT-VGDLDFLVASREG-----------E----RAVEGFVRLPQVKEVY 225 (575)
T ss_dssp HHHHHHHHHHHHTS--TTCCEEEECHHHHTTCSE-ESSEEEEEECSSH-----------H----HHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEccccccCCCc-cCCeEEEEeCCCH-----------H----HHHHHHHhCcchhhHh
Confidence 34455566666664 467899999999876655 3599999987631 1 2345555555554443
Q ss_pred EeccCCcceEEEEEcCCCeeEEEeecCchhhhhhHHHHHHhccchhhHHHHHHHHHHHHHCCCC
Q 020620 109 FVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (323)
Q Consensus 109 ~i~~ArVPIik~~~~~~~i~~DIs~~n~~g~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~~l~ 172 (323)
.....++-+ .. ..|+.|||-+-..... .+.|+.+-.+ +...+-++.||+++|+.
T Consensus 226 ~~g~~k~~~---~~-~~~~rvDl~~~~~~~~-~~al~~~TGs-----~~~n~~lR~~A~~~g~~ 279 (575)
T 3b0x_A 226 AKGKERATV---FL-KNGLQVDLRVVPPESY-GAGLQYLTGS-----AAHSIRLRALAQEKGLK 279 (575)
T ss_dssp EECSSEEEE---EE-TTSCEEEEEEECGGGH-HHHHHHHHCC-----HHHHHHHHHHHHHTTCE
T ss_pred hcCCCceEE---Ec-cCCcEEEEEEECHHHH-HHHHHHhhCC-----HHHHHHHHHHHHHcCCC
Confidence 322223222 22 3689999988654433 3333332211 23346788999998875
No 24
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=79.56 E-value=5.4 Score=37.01 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCcccccchhhHHHHHHHHHHHHHhcCCc
Q 020620 28 RMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGY 104 (323)
Q Consensus 28 R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~~~~~~ 104 (323)
-..+.+.|.+.++.+ .|+.++.+-||+.=|-.+ .+|||+.+..++.. ......+|..+.+.|.+.+.+
T Consensus 179 a~~ia~~i~~~l~~~--~~~~~v~i~GSyRRgket-~gDvDilit~~~~~------~~~~~~ll~~vv~~L~~~~~i 246 (381)
T 1jms_A 179 AEAVSMLVKEAVVTF--LPDALVTMTGGFRRGKMT-GHDVDFLITSPEAT------EDEEQQLLHKVTDFWKQQGLL 246 (381)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECHHHHTTCSC-BSSEEEEEECTTCC------HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhc--CCCcEEEEccccccCCCC-cCCeEEEEeCCCcc------ccchhhHHHHHHHHHHhCCCc
Confidence 345566667777765 578999999999877665 45999999977532 111234788888888877655
No 25
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=78.99 E-value=2 Score=35.31 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=60.4
Q ss_pred CCCCEEEeecCccCCCCCCCCCcceEEecCCCCcccccchhhHHHHHHHHHHHHHh--cCCcc-eEEEeccCCcceEEEE
Q 020620 45 LRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQ--KGGYR-RLQFVAHARVPILKFE 121 (323)
Q Consensus 45 ~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~~--~~~~~-~v~~i~~ArVPIik~~ 121 (323)
.|++++.+-||+.=|-.+- +|||+++..++. ..+.+.|.+ .+.+. ++..-...++-+ ++.
T Consensus 29 ~~g~~v~iaGS~RRgket~-gDiDiLit~~~~---------------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~ 91 (174)
T 1jaj_A 29 ILSKNIVAVGSLRREEKML-NDVDLLIIVPEK---------------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIE 91 (174)
T ss_dssp ECTTTEEEEEHHHHTCSEE-CCEEEEEEESSH---------------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEE
T ss_pred CCCcEEEEeccccCCCCCC-CCEEEEEecCCH---------------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeC
Confidence 4688999999998776553 599999987631 223444555 55554 443222233222 222
Q ss_pred EcCCCeeEEEeecCchhhhhhHHHHHHhccchhhHHHHHHHHHHHHHCCCC
Q 020620 122 TIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (323)
Q Consensus 122 ~~~~~i~~DIs~~n~~g~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~~l~ 172 (323)
..+.++.|||-+-..... .+.++.+=-. +...+-++.||+++|+.
T Consensus 92 ~~~~~~rVDl~~vp~~~f-g~ALl~fTGS-----k~hn~~lR~~A~~kG~~ 136 (174)
T 1jaj_A 92 WEKKTYQLDLFTALAEEK-PYAIFHFTGP-----VSYLIRIRAALKKKNYK 136 (174)
T ss_dssp SSSCCEEEEEEEEETTCH-HHHHHHHHSC-----HHHHHHHHHHHHHTTEE
T ss_pred CCCCceEEEEEEeCHHHH-HHHHHHhHCC-----HHHHHHHHHHHHHcCCC
Confidence 112789999987554332 2233332111 23346678899998764
No 26
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=78.30 E-value=2.8 Score=38.69 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEeecCccCCCCCCCCCcceEEecCCCCcccccchhhHHHHHHHHHHHHHhcCCcc
Q 020620 27 TRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYR 105 (323)
Q Consensus 27 ~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~~~~~~~ 105 (323)
.-..+.+.|.+.++.+ .|+.++.+-||+.=|-.+ .+|||+.+..++... ...+|..+...|.+.+.+.
T Consensus 158 ea~~i~~~i~~~l~~~--~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~--------~~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 158 DAEALQQLIEAAVRQT--LPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQ--------EVGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp HHHHHHHHHHHHHHTT--CTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTT--------TTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhc--CCCcEEEEccccccCCCc-cCCeEEEEecCChhh--------hhhHHHHHHHHHHhCCCee
Confidence 3345566677777775 578999999999877665 469999999775321 1237888888888766554
No 27
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=76.74 E-value=8.6 Score=34.23 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhccCCCC-EEEeecCccCCC--CCCCCCcceEEecCC
Q 020620 30 KVISDLREVVESVESLRGA-TVEPFGSFVSNL--FSRWGDLDISIELSN 75 (323)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~-~v~~fGS~~tgl--~~~~SDiDl~i~~~~ 75 (323)
.+++.+.++.+. .+.+ -|..-||.+++- .-.-||+||++...+
T Consensus 8 em~~~i~~~a~~---d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALN---DERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHH---CTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcC---CcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 567777777766 3444 477789999955 678899999999864
No 28
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, enterococcus FAE PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis} SCOP: d.218.1.14
Probab=40.99 E-value=1.4e+02 Score=23.99 Aligned_cols=128 Identities=11% Similarity=-0.010 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeecCccC-CCCCCCCCcceEEecCCCCcccccchhhHHHHHHHHHHHHH
Q 020620 21 LREDWETRMKVISDLREVVESVESLRGATVEPFGSFVS-NLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALR 99 (323)
Q Consensus 21 t~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~t-gl~~~~SDiDl~i~~~~~~~~~s~~~~~~~~~l~~l~~~L~ 99 (323)
+++.-+.=.+....|+.++.. .-++|.-.||++- |+.-+. .|||.+..++.... ..+...|.
T Consensus 12 d~~W~~~f~~e~~~l~~~l~~----~~~~I~HIGSTsVpGl~AKP-IIDI~v~V~~~~~~------------~~~~~~L~ 74 (173)
T 2nrk_A 12 QPAWVEQFEEEAQALKQILKE----NCLKVEHIGSTSVPNLAAKP-IIDFLVIVEEIEKV------------DLLQWEFE 74 (173)
T ss_dssp CTHHHHHHHHHHHHHHHHHGG----GEEEEEEESGGGSTTCCBCS-CEEEEEEESCSGGG------------GGGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCC----ccceEEEECCCCCCCCCcCC-eeEEEeccCCHHHH------------HHHHHHHH
Confidence 333333333445556666643 2378999999955 777655 67777666543211 11223344
Q ss_pred hcCCcceEEEeccCCcc-eEEEEEcC--CCeeEEEeecCc-hhhhhhHHHHHHhccchhhHHHHHHHHHHHHHC
Q 020620 100 QKGGYRRLQFVAHARVP-ILKFETIH--QNISCDISIDNL-CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAH 169 (323)
Q Consensus 100 ~~~~~~~v~~i~~ArVP-Iik~~~~~--~~i~~DIs~~n~-~g~~~s~li~~~~~~~~~~~~L~~~iK~w~k~~ 169 (323)
+.+ +.. .....+| -.-|.... .-..+-|..... .....--.++.|+..+|..+.-.--+|.=+...
T Consensus 75 ~~G-y~~---~~e~~~~~r~~f~k~~~~r~~hlHv~~~g~~~~~~~~L~FRDyLr~~p~~~~~Y~~lK~~la~~ 144 (173)
T 2nrk_A 75 RIG-YEY---MGEFGLSGRRYLRKGPIKRTHHVHIYQFDNTQEILRHLAFRNYLRENPAIATTYGTLKKQLAQA 144 (173)
T ss_dssp HTT-CEE---CTTTTSTTEEEEEECSSSCCEEEEEEETTCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTT
T ss_pred HCC-CEE---CCCCCCCccEEEEcCCCCceEEEEEEecCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 322 110 0011111 11111111 234444454444 455666678999999999999999999877654
No 29
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=35.49 E-value=31 Score=22.47 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCCCCCCCCCChHHH
Q 020620 159 VLLVKEWAKAHDINNPKTGTFNSYSL 184 (323)
Q Consensus 159 ~~~iK~w~k~~~l~~~~~G~lssy~l 184 (323)
..-|+.||+..|+.-+.+|-++.=.+
T Consensus 15 ~~aIR~WAr~nG~~VsdRGRIp~~V~ 40 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGRIPADVI 40 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSCCCHHHH
T ss_pred hHHHHHHHHHcCCcCCCCCCCCHHHH
Confidence 45799999999999999999886543
No 30
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=32.69 E-value=39 Score=31.75 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=25.5
Q ss_pred CCEEEeecCccCCCCCCCCCcceEEecCC
Q 020620 47 GATVEPFGSFVSNLFSRWGDLDISIELSN 75 (323)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~i~~~~ 75 (323)
+.-|..+||..-+=-.+.||+|++++.++
T Consensus 154 ~~aviamGk~Gr~EL~~~SDiDli~l~~~ 182 (440)
T 1v4a_A 154 PLLILGMGKLGGGELNFSSDIDLIFAWPE 182 (440)
T ss_dssp CCEEEECHHHHTTCCCSSCCEEEEEEECC
T ss_pred CEEEEEeccccccCcCCCCCcceEEEeCC
Confidence 36789999999999999999999999874
No 31
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=31.68 E-value=71 Score=29.52 Aligned_cols=107 Identities=18% Similarity=0.271 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHHhhccCCCCEEEeecCccCCCCC---CCCCcceEEecCCCCccc
Q 020620 7 LEPILKDILGMLNPLREDWETRMK---VISDLREVVESVESLRGATVEPFGSFVSNLFS---RWGDLDISIELSNGSCIS 80 (323)
Q Consensus 7 L~~~i~~~~~~~~pt~~e~~~R~~---~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~---~~SDiDl~i~~~~~~~~~ 80 (323)
|-.++..-++-..|++.+...|.. ++..|.+++.+.....+-...+|||+..-+-. +-+|||+.=..
T Consensus 137 la~~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhlLNp~I~YgDIDilqTN------- 209 (479)
T 3er9_B 137 LARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQTN------- 209 (479)
T ss_dssp HHHHHHHHHCCCC-----------CCTTHHHHHHHHHHHHHHCTTTEEEESHHHHHTTCTTCCCCSCEEEESS-------
T ss_pred HHHHHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHhcCCCeEEeeceeeeecCCCcccCCcceeeec-------
Confidence 445555555556676534333332 34444444433221234456889999775554 46899996432
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCcceEEEeccCCcceE----EEEEcCCCeeEE
Q 020620 81 SAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPIL----KFETIHQNISCD 130 (323)
Q Consensus 81 s~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIi----k~~~~~~~i~~D 130 (323)
.+.+|-.++-.+.=.-+- ++.. -+||-+ -+.+...+.-+|
T Consensus 210 ------ar~fLInlafLI~FitG~-~v~L---lkVPyLknyivlkdee~~hIiD 253 (479)
T 3er9_B 210 ------SRTFLIDLAFLIKFITGN-NIIL---SKIPYLRNYMVIKDENDNHIID 253 (479)
T ss_dssp ------HHHHHHHHHHHHHHHHCC-CCEE---EECTTSSSEEEEECTTCCEEEE
T ss_pred ------cHHHHHHHHHHHhhhcCc-eEEE---EEcccccceEEEEecCCCEEEE
Confidence 345777777666532121 2222 277844 355543444444
No 32
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=31.13 E-value=26 Score=28.32 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEeecCccC---CCCCCCCCcceEEe
Q 020620 28 RMKVISDLREVVESVESLRGATVEPFGSFVS---NLFSRWGDLDISIE 72 (323)
Q Consensus 28 R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~t---gl~~~~SDiDl~i~ 72 (323)
|..+...++++...+ ...++...+-||++. |...+.-||||.+.
T Consensus 15 ~~~~~~~L~~i~~~L-~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~ 61 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRL-XNEXVNWVVTGSLSFALQGVPVEVHDIDIQTD 61 (169)
T ss_dssp CHHHHHHHHHHHHHH-TTSSCCEEEEHHHHHHHTTCCCCCCSEEEEEC
T ss_pred cHHHHHHHHHHHHHH-HhcCCCEEEeHHHHHHHcCCCCCCCccEEEec
Confidence 344455555555554 245788999999954 78788889999983
No 33
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=29.06 E-value=57 Score=31.23 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=25.7
Q ss_pred CCEEEeecCccCCCCCCCCCcceEEecCCC
Q 020620 47 GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (323)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~i~~~~~ 76 (323)
+.-|..+|+..-+=-...||+|++++.+..
T Consensus 234 ~~aviamGklGg~EL~~~SDiDlifv~~~~ 263 (498)
T 3k7d_A 234 GFAVVGYGKLGGWELGYSSDLDLIFLHDCP 263 (498)
T ss_dssp SEEEEEEHHHHTTCCCTTCCEEEEEEECCC
T ss_pred CEEEEeeccccccccCcccccceeeeecCc
Confidence 367899999988888899999999998753
Done!