Query 020622
Match_columns 323
No_of_seqs 351 out of 2560
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 3.8E-42 1.3E-46 320.5 20.5 217 99-315 2-218 (282)
2 3cnl_A YLQF, putative uncharac 100.0 8.8E-36 3E-40 274.7 4.9 165 100-283 1-166 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 4.1E-25 1.4E-29 212.8 14.9 154 108-275 59-225 (369)
4 3h2y_A GTPase family protein; 99.9 1.1E-24 3.8E-29 209.7 13.3 154 108-275 57-224 (368)
5 1mky_A Probable GTP-binding pr 99.9 2.5E-22 8.7E-27 197.2 14.1 165 108-273 69-239 (439)
6 2hjg_A GTP-binding protein ENG 99.9 1.5E-22 5E-27 198.7 10.2 168 100-274 55-235 (436)
7 4dcu_A GTP-binding protein ENG 99.8 8.3E-21 2.8E-25 187.2 12.4 168 100-274 75-255 (456)
8 1t9h_A YLOQ, probable GTPase E 99.8 1.8E-21 6.2E-26 182.8 6.4 140 117-276 83-238 (307)
9 2yv5_A YJEQ protein; hydrolase 99.8 3.1E-19 1.1E-23 167.2 13.1 138 117-274 76-228 (302)
10 2rcn_A Probable GTPase ENGC; Y 99.8 5E-19 1.7E-23 169.4 10.0 141 115-275 125-281 (358)
11 1u0l_A Probable GTPase ENGC; p 99.7 8.7E-18 3E-22 157.1 10.8 140 117-276 81-235 (301)
12 2e87_A Hypothetical protein PH 99.5 9.5E-16 3.2E-20 146.4 -1.3 156 121-277 58-229 (357)
13 2qtf_A Protein HFLX, GTP-bindi 99.3 1.6E-14 5.5E-19 138.6 -4.9 186 66-274 36-238 (364)
14 4a9a_A Ribosome-interacting GT 99.3 2.5E-12 8.6E-17 123.7 6.5 58 217-275 72-132 (376)
15 3j2k_7 ERF3, eukaryotic polype 99.2 2.4E-11 8.3E-16 119.1 11.1 129 65-195 62-217 (439)
16 3p26_A Elongation factor 1 alp 99.2 5.9E-11 2E-15 117.6 10.0 128 64-192 77-227 (483)
17 1zun_B Sulfate adenylate trans 99.2 4E-11 1.4E-15 117.2 8.4 127 65-192 71-213 (434)
18 1wb1_A Translation elongation 99.1 2.8E-10 9.5E-15 112.9 10.3 130 72-202 47-188 (482)
19 3lxw_A GTPase IMAP family memb 99.0 1.7E-10 5.7E-15 104.4 5.7 60 216-275 20-83 (247)
20 1r5b_A Eukaryotic peptide chai 99.0 3.6E-10 1.2E-14 111.6 8.2 127 67-194 90-243 (467)
21 1svi_A GTP-binding protein YSX 99.0 4.2E-10 1.4E-14 96.3 7.5 61 216-276 22-83 (195)
22 3pqc_A Probable GTP-binding pr 99.0 7.3E-10 2.5E-14 94.3 8.7 59 217-275 23-81 (195)
23 1wf3_A GTP-binding protein; GT 99.0 2.6E-10 8.8E-15 106.4 6.3 58 218-275 8-68 (301)
24 1kk1_A EIF2gamma; initiation o 99.0 8.2E-10 2.8E-14 107.1 9.8 101 100-201 87-198 (410)
25 1mky_A Probable GTP-binding pr 99.0 1.7E-10 5.8E-15 112.9 3.8 56 219-274 3-61 (439)
26 4dhe_A Probable GTP-binding pr 99.0 3.1E-10 1E-14 99.5 5.1 59 217-275 29-92 (223)
27 3sjy_A Translation initiation 99.0 1.7E-09 5.7E-14 104.7 10.5 101 100-201 79-190 (403)
28 1x3s_A RAS-related protein RAB 99.0 3.6E-10 1.2E-14 96.4 5.2 119 100-232 68-194 (195)
29 3gee_A MNME, tRNA modification 99.0 1.9E-10 6.4E-15 114.0 3.8 59 216-274 232-293 (476)
30 1f60_A Elongation factor EEF1A 99.0 2.5E-10 8.4E-15 112.5 4.4 128 65-193 52-202 (458)
31 3lxx_A GTPase IMAP family memb 99.0 7E-10 2.4E-14 99.1 7.1 64 216-280 28-96 (239)
32 3iev_A GTP-binding protein ERA 99.0 6E-10 2.1E-14 104.1 6.5 60 217-276 10-73 (308)
33 3cb4_D GTP-binding protein LEP 99.0 1.2E-09 4.3E-14 110.9 9.2 162 71-240 39-216 (599)
34 2gj8_A MNME, tRNA modification 99.0 6.2E-10 2.1E-14 94.4 5.9 58 217-274 4-64 (172)
35 1xzp_A Probable tRNA modificat 98.9 1.5E-10 5E-15 114.9 2.0 57 217-273 243-302 (482)
36 3i8s_A Ferrous iron transport 98.9 6.8E-10 2.3E-14 102.0 6.2 58 217-275 3-63 (274)
37 1h65_A Chloroplast outer envel 98.9 1.1E-09 3.8E-14 99.9 7.6 60 216-275 38-100 (270)
38 4dhe_A Probable GTP-binding pr 98.9 4.3E-09 1.5E-13 92.1 11.0 103 100-202 83-210 (223)
39 1s0u_A EIF-2-gamma, translatio 98.9 6.8E-10 2.3E-14 107.6 6.1 101 100-201 85-196 (408)
40 1jny_A EF-1-alpha, elongation 98.9 1E-09 3.4E-14 107.4 7.1 123 70-193 56-203 (435)
41 3def_A T7I23.11 protein; chlor 98.9 1.6E-09 5.4E-14 98.6 7.6 60 216-275 35-97 (262)
42 3izq_1 HBS1P, elongation facto 98.9 5.4E-10 1.8E-14 113.9 4.8 128 65-193 212-362 (611)
43 2hjg_A GTP-binding protein ENG 98.9 4.5E-10 1.5E-14 109.8 3.4 56 218-273 4-62 (436)
44 2cxx_A Probable GTP-binding pr 98.9 2.8E-09 9.5E-14 90.4 7.8 56 218-275 2-57 (190)
45 3iby_A Ferrous iron transport 98.9 2.1E-09 7.1E-14 97.9 7.5 57 219-276 3-62 (256)
46 2c78_A Elongation factor TU-A; 98.9 2.8E-09 9.7E-14 103.1 8.5 116 73-189 50-180 (405)
47 2xtp_A GTPase IMAP family memb 98.9 1.8E-09 6.1E-14 97.6 5.9 61 216-276 21-85 (260)
48 1ega_A Protein (GTP-binding pr 98.9 1.4E-09 4.7E-14 101.4 5.2 56 218-273 9-67 (301)
49 3b1v_A Ferrous iron uptake tra 98.9 4.7E-09 1.6E-13 96.5 8.5 58 217-275 3-62 (272)
50 3a1s_A Iron(II) transport prot 98.9 4.5E-09 1.5E-13 95.7 8.2 59 217-276 5-66 (258)
51 1d2e_A Elongation factor TU (E 98.8 2.5E-09 8.6E-14 103.3 6.6 126 74-200 42-192 (397)
52 3t5d_A Septin-7; GTP-binding p 98.8 3.3E-09 1.1E-13 97.1 6.4 58 216-273 7-76 (274)
53 3geh_A MNME, tRNA modification 98.8 9.6E-10 3.3E-14 108.5 3.0 59 216-274 223-284 (462)
54 1f5n_A Interferon-induced guan 98.8 2.5E-09 8.4E-14 108.3 6.0 58 216-275 37-104 (592)
55 1pui_A ENGB, probable GTP-bind 98.8 2.4E-09 8.4E-14 92.8 5.0 59 216-274 25-84 (210)
56 3k53_A Ferrous iron transport 98.8 6.6E-09 2.3E-13 94.8 8.0 59 217-276 3-64 (271)
57 3mca_A HBS1, elongation factor 98.8 2.5E-10 8.6E-15 115.9 -1.7 126 65-191 222-371 (592)
58 2nzj_A GTP-binding protein REM 98.8 5.6E-09 1.9E-13 87.2 6.8 58 217-274 4-64 (175)
59 1svi_A GTP-binding protein YSX 98.8 2.4E-08 8.2E-13 85.2 10.6 101 100-200 73-192 (195)
60 2wji_A Ferrous iron transport 98.8 7.3E-09 2.5E-13 86.8 7.2 58 217-275 3-63 (165)
61 1wxq_A GTP-binding protein; st 98.8 1.5E-09 5.1E-14 105.1 3.3 37 218-255 1-37 (397)
62 3iev_A GTP-binding protein ERA 98.8 1.6E-08 5.5E-13 94.3 9.9 104 100-203 63-182 (308)
63 1jal_A YCHF protein; nucleotid 98.8 2.6E-09 9E-14 102.1 4.6 56 218-274 3-78 (363)
64 2aka_B Dynamin-1; fusion prote 98.8 8.9E-09 3E-13 94.4 7.6 35 216-250 25-64 (299)
65 2dyk_A GTP-binding protein; GT 98.8 3.8E-09 1.3E-13 87.0 4.6 57 218-274 2-61 (161)
66 2wjg_A FEOB, ferrous iron tran 98.8 1.6E-08 5.6E-13 85.7 8.7 59 216-275 6-67 (188)
67 3avx_A Elongation factor TS, e 98.8 2.2E-08 7.6E-13 107.5 11.4 127 73-200 334-483 (1289)
68 2elf_A Protein translation elo 98.8 2.6E-08 9E-13 95.5 10.2 119 81-202 43-179 (370)
69 3pqc_A Probable GTP-binding pr 98.8 3.2E-08 1.1E-12 84.0 9.7 84 118-201 102-192 (195)
70 2qu8_A Putative nucleolar GTP- 98.7 7.3E-09 2.5E-13 91.6 5.7 58 216-274 28-88 (228)
71 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 9.1E-09 3.1E-13 99.4 6.5 60 215-274 18-97 (392)
72 2x2e_A Dynamin-1; nitration, h 98.7 1E-08 3.4E-13 97.4 6.6 34 217-250 31-69 (353)
73 1z0j_A RAB-22, RAS-related pro 98.7 1.9E-08 6.4E-13 83.4 7.1 58 216-273 5-66 (170)
74 2ohf_A Protein OLA1, GTP-bindi 98.7 8E-09 2.7E-13 99.8 5.4 60 215-275 20-99 (396)
75 3t5g_A GTP-binding protein RHE 98.7 2E-09 6.8E-14 90.9 0.6 114 100-232 58-180 (181)
76 3t1o_A Gliding protein MGLA; G 98.7 9E-09 3.1E-13 87.5 4.4 100 100-200 78-189 (198)
77 3bc1_A RAS-related protein RAB 98.7 2.2E-08 7.6E-13 84.7 6.7 101 100-201 74-183 (195)
78 1r8s_A ADP-ribosylation factor 98.7 1.7E-08 5.7E-13 83.5 5.7 100 100-200 48-159 (164)
79 3q72_A GTP-binding protein RAD 98.7 1.5E-08 5E-13 84.0 5.1 58 217-274 2-61 (166)
80 1u8z_A RAS-related protein RAL 98.7 3.6E-08 1.2E-12 81.2 7.5 99 100-199 56-163 (168)
81 2dyk_A GTP-binding protein; GT 98.7 1.8E-08 6.2E-13 82.9 5.5 97 100-199 53-158 (161)
82 1jwy_B Dynamin A GTPase domain 98.7 1.8E-08 6E-13 93.4 6.1 26 217-242 24-49 (315)
83 4bas_A ADP-ribosylation factor 98.7 7.8E-09 2.7E-13 88.4 3.3 101 100-201 67-187 (199)
84 1zd9_A ADP-ribosylation factor 98.7 4.6E-08 1.6E-12 83.5 7.7 100 100-200 71-182 (188)
85 2f7s_A C25KG, RAS-related prot 98.7 5.8E-08 2E-12 84.6 8.4 99 100-201 88-197 (217)
86 1upt_A ARL1, ADP-ribosylation 98.7 1.1E-08 3.6E-13 85.2 3.5 101 100-201 55-167 (171)
87 2h57_A ADP-ribosylation factor 98.6 9.1E-09 3.1E-13 87.8 3.1 101 100-201 71-185 (190)
88 1ek0_A Protein (GTP-binding pr 98.6 4.1E-08 1.4E-12 81.2 6.7 57 217-273 3-63 (170)
89 1zj6_A ADP-ribosylation factor 98.6 2.3E-08 7.9E-13 85.1 5.2 101 100-201 64-176 (187)
90 2a9k_A RAS-related protein RAL 98.6 4E-08 1.4E-12 82.7 6.5 101 100-201 70-179 (187)
91 2ywe_A GTP-binding protein LEP 98.6 5.3E-08 1.8E-12 98.8 8.4 129 71-201 41-182 (600)
92 1kao_A RAP2A; GTP-binding prot 98.6 6.1E-08 2.1E-12 79.7 7.3 55 217-273 3-62 (167)
93 1ksh_A ARF-like protein 2; sma 98.6 2.2E-08 7.5E-13 84.9 4.7 101 100-201 66-178 (186)
94 1wf3_A GTP-binding protein; GT 98.6 3.5E-08 1.2E-12 91.9 6.3 101 100-201 59-171 (301)
95 4dcu_A GTP-binding protein ENG 98.6 1.3E-07 4.6E-12 92.7 10.8 103 100-202 247-368 (456)
96 2g6b_A RAS-related protein RAB 98.6 2.9E-08 9.9E-13 83.3 5.2 101 100-201 64-172 (180)
97 2j69_A Bacterial dynamin-like 98.6 5.1E-08 1.7E-12 100.7 7.9 36 216-251 68-103 (695)
98 1z0f_A RAB14, member RAS oncog 98.6 4.6E-08 1.6E-12 81.7 6.1 99 100-199 68-174 (179)
99 2g6b_A RAS-related protein RAB 98.6 6.8E-08 2.3E-12 81.0 7.0 58 216-273 9-71 (180)
100 3tr5_A RF-3, peptide chain rel 98.6 8.5E-08 2.9E-12 96.0 8.9 89 73-162 57-149 (528)
101 2efe_B Small GTP-binding prote 98.6 2.8E-08 9.7E-13 83.4 4.6 101 100-201 65-173 (181)
102 3cph_A RAS-related protein SEC 98.6 2.9E-08 1E-12 85.8 4.8 101 100-201 73-180 (213)
103 2ged_A SR-beta, signal recogni 98.6 2.8E-08 9.6E-13 84.7 4.5 81 186-275 22-104 (193)
104 2b6h_A ADP-ribosylation factor 98.6 3.5E-08 1.2E-12 84.8 5.0 99 100-199 77-187 (192)
105 3tkl_A RAS-related protein RAB 98.6 3.3E-08 1.1E-12 84.3 4.7 101 100-201 69-177 (196)
106 3r7w_A Gtpase1, GTP-binding pr 98.6 3.7E-08 1.3E-12 91.8 5.4 57 217-273 3-63 (307)
107 2fg5_A RAB-22B, RAS-related pr 98.6 6.4E-08 2.2E-12 82.9 6.5 58 216-273 22-83 (192)
108 1kao_A RAP2A; GTP-binding prot 98.6 4.5E-08 1.5E-12 80.5 5.3 100 100-200 55-163 (167)
109 2y8e_A RAB-protein 6, GH09086P 98.6 3.8E-08 1.3E-12 82.2 4.9 100 100-200 67-174 (179)
110 1r2q_A RAS-related protein RAB 98.6 2.7E-08 9.3E-13 82.3 3.9 100 100-200 59-166 (170)
111 2qpt_A EH domain-containing pr 98.6 3.9E-08 1.3E-12 99.0 5.8 39 216-254 64-104 (550)
112 1r2q_A RAS-related protein RAB 98.6 8.6E-08 3E-12 79.2 7.0 58 216-273 5-66 (170)
113 2erx_A GTP-binding protein DI- 98.6 8.4E-08 2.9E-12 79.4 6.9 101 100-201 55-165 (172)
114 2dby_A GTP-binding protein; GD 98.6 2.8E-08 9.7E-13 95.2 4.5 57 218-275 2-82 (368)
115 1z0f_A RAB14, member RAS oncog 98.6 9.2E-08 3.1E-12 79.8 7.1 58 216-273 14-75 (179)
116 1upt_A ARL1, ADP-ribosylation 98.6 5.3E-08 1.8E-12 80.8 5.4 56 216-273 6-62 (171)
117 4dsu_A GTPase KRAS, isoform 2B 98.6 1E-07 3.5E-12 80.4 7.3 57 216-274 3-64 (189)
118 2lkc_A Translation initiation 98.6 2.3E-08 7.8E-13 83.8 3.2 57 216-273 7-66 (178)
119 3tw8_B RAS-related protein RAB 98.6 9.1E-08 3.1E-12 80.0 6.7 57 216-273 8-69 (181)
120 1u8z_A RAS-related protein RAL 98.6 1.3E-07 4.5E-12 77.8 7.6 55 217-273 4-63 (168)
121 2h17_A ADP-ribosylation factor 98.6 1.6E-08 5.4E-13 85.8 1.9 98 100-198 69-178 (181)
122 1z2a_A RAS-related protein RAB 98.5 5.3E-08 1.8E-12 80.5 4.9 99 100-199 58-163 (168)
123 1lnz_A SPO0B-associated GTP-bi 98.5 2.7E-08 9.2E-13 94.5 3.4 55 219-274 160-218 (342)
124 2il1_A RAB12; G-protein, GDP, 98.5 1.1E-07 3.9E-12 81.4 7.0 99 100-199 79-186 (192)
125 1wms_A RAB-9, RAB9, RAS-relate 98.5 1.1E-07 3.7E-12 79.5 6.7 57 216-273 6-67 (177)
126 3tw8_B RAS-related protein RAB 98.5 2.5E-08 8.7E-13 83.5 2.6 100 100-202 62-170 (181)
127 1c1y_A RAS-related protein RAP 98.5 8.9E-08 3.1E-12 79.0 5.8 99 100-199 55-163 (167)
128 3kkq_A RAS-related protein M-R 98.5 7.1E-08 2.4E-12 81.4 5.3 100 100-200 70-179 (183)
129 3clv_A RAB5 protein, putative; 98.5 6.9E-08 2.4E-12 82.0 5.2 100 100-200 97-201 (208)
130 1z2a_A RAS-related protein RAB 98.5 1.4E-07 4.8E-12 77.9 6.9 58 216-274 4-66 (168)
131 2oil_A CATX-8, RAS-related pro 98.5 1.6E-07 5.4E-12 80.1 7.3 60 215-274 23-86 (193)
132 1fzq_A ADP-ribosylation factor 98.5 1E-07 3.4E-12 81.1 6.1 100 100-200 64-175 (181)
133 2gf9_A RAS-related protein RAB 98.5 1.6E-07 5.5E-12 79.9 7.4 58 216-273 21-82 (189)
134 2bov_A RAla, RAS-related prote 98.5 1.7E-07 5.7E-12 80.5 7.5 101 100-201 66-175 (206)
135 2www_A Methylmalonic aciduria 98.5 2.7E-08 9.4E-13 94.5 2.7 24 216-239 73-96 (349)
136 3bwd_D RAC-like GTP-binding pr 98.5 3.4E-08 1.2E-12 83.0 3.0 99 100-199 60-177 (182)
137 1z0j_A RAB-22, RAS-related pro 98.5 6.7E-08 2.3E-12 80.0 4.7 100 100-200 59-166 (170)
138 1ksh_A ARF-like protein 2; sma 98.5 9.1E-08 3.1E-12 81.0 5.6 56 216-273 17-73 (186)
139 1fzq_A ADP-ribosylation factor 98.5 5.9E-08 2E-12 82.5 4.3 56 216-273 15-71 (181)
140 2efe_B Small GTP-binding prote 98.5 1.6E-07 5.6E-12 78.7 7.0 58 216-273 11-72 (181)
141 2h17_A ADP-ribosylation factor 98.5 7.9E-08 2.7E-12 81.4 5.0 57 216-273 20-76 (181)
142 3gj0_A GTP-binding nuclear pro 98.5 9.2E-08 3.2E-12 83.7 5.6 59 216-274 14-76 (221)
143 1moz_A ARL1, ADP-ribosylation 98.5 2.5E-08 8.7E-13 84.0 1.9 101 100-201 66-178 (183)
144 1z08_A RAS-related protein RAB 98.5 1.7E-07 5.9E-12 77.6 6.9 57 216-273 5-66 (170)
145 1zbd_A Rabphilin-3A; G protein 98.5 2.2E-07 7.4E-12 79.9 7.8 58 216-273 7-68 (203)
146 1ek0_A Protein (GTP-binding pr 98.5 6.4E-08 2.2E-12 80.0 4.2 99 100-199 56-165 (170)
147 2fg5_A RAB-22B, RAS-related pr 98.5 7.6E-08 2.6E-12 82.4 4.8 99 100-201 76-184 (192)
148 2p5s_A RAS and EF-hand domain 98.5 1.2E-07 4.1E-12 81.6 6.0 58 216-273 27-88 (199)
149 2hup_A RAS-related protein RAB 98.5 2E-07 6.9E-12 80.6 7.5 101 100-201 82-191 (201)
150 2hxs_A RAB-26, RAS-related pro 98.5 9.4E-08 3.2E-12 80.0 5.2 100 100-200 60-170 (178)
151 3qq5_A Small GTP-binding prote 98.5 4.6E-08 1.6E-12 95.4 3.7 58 217-274 34-95 (423)
152 2lkc_A Translation initiation 98.5 3E-08 1E-12 83.1 2.1 101 100-202 59-170 (178)
153 1z06_A RAS-related protein RAB 98.5 1.9E-07 6.6E-12 79.4 7.2 58 216-273 19-80 (189)
154 1c1y_A RAS-related protein RAP 98.5 1.7E-07 5.9E-12 77.2 6.7 56 217-274 3-63 (167)
155 1g16_A RAS-related protein SEC 98.5 1.2E-07 4.1E-12 78.5 5.7 57 217-274 3-64 (170)
156 3dz8_A RAS-related protein RAB 98.5 2.1E-07 7.2E-12 79.4 7.4 100 100-200 76-183 (191)
157 2y8e_A RAB-protein 6, GH09086P 98.5 1.7E-07 5.9E-12 78.1 6.7 56 217-273 14-74 (179)
158 2j1l_A RHO-related GTP-binding 98.5 1.8E-07 6.2E-12 81.7 7.1 101 100-201 86-207 (214)
159 4dsu_A GTPase KRAS, isoform 2B 98.5 1.4E-07 4.8E-12 79.5 6.1 101 100-201 56-164 (189)
160 2fn4_A P23, RAS-related protei 98.5 7.8E-08 2.7E-12 80.4 4.4 101 100-201 61-170 (181)
161 1x3s_A RAS-related protein RAB 98.5 1.9E-07 6.4E-12 79.3 6.8 58 217-274 15-76 (195)
162 2il1_A RAB12; G-protein, GDP, 98.5 1.7E-07 5.7E-12 80.3 6.5 57 216-273 25-86 (192)
163 2h57_A ADP-ribosylation factor 98.5 1.8E-07 6E-12 79.7 6.5 58 216-273 20-78 (190)
164 1moz_A ARL1, ADP-ribosylation 98.5 8.4E-08 2.9E-12 80.8 4.4 56 216-273 17-73 (183)
165 3t5g_A GTP-binding protein RHE 98.5 2.2E-07 7.7E-12 78.1 7.0 57 216-274 5-66 (181)
166 1zj6_A ADP-ribosylation factor 98.5 1.2E-07 3.9E-12 80.7 5.2 55 217-273 16-71 (187)
167 2ce2_X GTPase HRAS; signaling 98.5 2.7E-07 9.3E-12 75.5 7.2 56 217-274 3-63 (166)
168 2p5s_A RAS and EF-hand domain 98.5 1.8E-07 6.3E-12 80.4 6.5 99 100-199 81-193 (199)
169 2x77_A ADP-ribosylation factor 98.5 1.6E-08 5.3E-13 86.2 -0.5 101 100-201 70-182 (189)
170 2a9k_A RAS-related protein RAL 98.5 2.8E-07 9.7E-12 77.4 7.4 56 216-273 17-77 (187)
171 2x77_A ADP-ribosylation factor 98.5 1.1E-07 3.8E-12 80.8 4.8 56 216-273 21-77 (189)
172 4djt_A GTP-binding nuclear pro 98.5 8.9E-08 3E-12 83.4 4.3 101 100-201 65-173 (218)
173 2bme_A RAB4A, RAS-related prot 98.5 2.5E-07 8.5E-12 78.1 7.0 57 216-273 9-70 (186)
174 2yc2_C IFT27, small RAB-relate 98.5 1.3E-07 4.5E-12 81.1 5.3 100 100-200 77-189 (208)
175 3tkl_A RAS-related protein RAB 98.5 2.4E-07 8.2E-12 78.8 6.8 57 216-273 15-76 (196)
176 2fu5_C RAS-related protein RAB 98.5 9.2E-08 3.1E-12 80.7 4.1 99 100-201 61-169 (183)
177 2gf0_A GTP-binding protein DI- 98.5 2.4E-07 8.2E-12 79.0 6.8 101 100-201 60-169 (199)
178 2a5j_A RAS-related protein RAB 98.5 2E-07 7E-12 79.5 6.3 59 216-274 20-82 (191)
179 2ce2_X GTPase HRAS; signaling 98.5 1.8E-07 6.1E-12 76.7 5.7 100 100-200 55-162 (166)
180 1mh1_A RAC1; GTP-binding, GTPa 98.5 5.2E-08 1.8E-12 82.0 2.4 101 100-201 57-178 (186)
181 2j0v_A RAC-like GTP-binding pr 98.5 4.4E-08 1.5E-12 85.0 2.1 101 100-201 61-178 (212)
182 2bov_A RAla, RAS-related prote 98.5 3.1E-07 1.1E-11 78.8 7.4 56 216-273 13-73 (206)
183 1xzp_A Probable tRNA modificat 98.4 3.7E-07 1.3E-11 90.4 8.8 88 112-200 315-402 (482)
184 3con_A GTPase NRAS; structural 98.4 2.1E-07 7.3E-12 79.0 6.2 101 100-201 73-181 (190)
185 3gee_A MNME, tRNA modification 98.4 2.1E-07 7.2E-12 92.1 7.0 99 100-201 285-396 (476)
186 1g16_A RAS-related protein SEC 98.4 7.9E-08 2.7E-12 79.6 3.3 100 101-201 57-163 (170)
187 3con_A GTPase NRAS; structural 98.4 3.2E-07 1.1E-11 77.9 7.2 56 216-273 20-80 (190)
188 3cph_A RAS-related protein SEC 98.4 2.8E-07 9.4E-12 79.6 6.9 58 216-274 19-81 (213)
189 4djt_A GTP-binding nuclear pro 98.4 1.9E-07 6.5E-12 81.3 5.9 59 216-274 10-73 (218)
190 3clv_A RAB5 protein, putative; 98.4 3E-07 1E-11 78.0 6.9 26 216-241 6-31 (208)
191 2bme_A RAB4A, RAS-related prot 98.4 1.6E-07 5.3E-12 79.3 5.1 100 100-200 63-170 (186)
192 1zbd_A Rabphilin-3A; G protein 98.4 2E-07 6.8E-12 80.1 5.8 98 100-200 61-168 (203)
193 3q85_A GTP-binding protein REM 98.4 3.7E-07 1.3E-11 75.6 7.3 98 101-199 56-163 (169)
194 4bas_A ADP-ribosylation factor 98.4 2.6E-07 9E-12 78.8 6.5 56 216-273 16-74 (199)
195 3o47_A ADP-ribosylation factor 98.4 1.5E-07 5.2E-12 88.5 5.5 115 85-200 196-324 (329)
196 1vg8_A RAS-related protein RAB 98.4 2.7E-07 9.3E-12 79.3 6.6 57 216-273 7-68 (207)
197 1ega_A Protein (GTP-binding pr 98.4 9.9E-08 3.4E-12 88.7 4.1 102 100-202 60-174 (301)
198 2oil_A CATX-8, RAS-related pro 98.4 1.9E-07 6.5E-12 79.6 5.5 100 100-200 78-185 (193)
199 2atx_A Small GTP binding prote 98.4 7.6E-08 2.6E-12 82.2 3.0 99 100-199 70-189 (194)
200 2fh5_B SR-beta, signal recogni 98.4 2.5E-07 8.7E-12 80.2 6.3 55 217-273 7-65 (214)
201 1z08_A RAS-related protein RAB 98.4 1E-07 3.5E-12 79.0 3.6 95 102-199 61-165 (170)
202 3q72_A GTP-binding protein RAD 98.4 2.3E-07 8E-12 76.6 5.8 100 100-200 53-161 (166)
203 1ky3_A GTP-binding protein YPT 98.4 2.6E-07 8.9E-12 77.2 6.1 100 100-200 62-175 (182)
204 2qu8_A Putative nucleolar GTP- 98.4 1.8E-06 6E-11 76.1 11.8 88 114-201 102-203 (228)
205 3gj0_A GTP-binding nuclear pro 98.4 3.5E-08 1.2E-12 86.4 0.7 100 100-200 68-172 (221)
206 2erx_A GTP-binding protein DI- 98.4 4.9E-07 1.7E-11 74.7 7.7 54 217-273 3-62 (172)
207 3kkq_A RAS-related protein M-R 98.4 4.7E-07 1.6E-11 76.2 7.5 58 216-274 17-78 (183)
208 2gco_A H9, RHO-related GTP-bin 98.4 1.2E-07 4.1E-12 81.9 3.8 100 100-200 77-197 (201)
209 2nzj_A GTP-binding protein REM 98.4 2.9E-07 9.9E-12 76.6 6.1 102 100-201 56-167 (175)
210 1m2o_B GTP-binding protein SAR 98.4 2.5E-07 8.5E-12 79.3 5.8 55 217-273 23-78 (190)
211 1f6b_A SAR1; gtpases, N-termin 98.4 1E-07 3.5E-12 82.4 3.4 99 100-199 73-195 (198)
212 2a5j_A RAS-related protein RAB 98.4 1.2E-07 4.1E-12 80.9 3.8 100 100-200 74-181 (191)
213 1z06_A RAS-related protein RAB 98.4 4.9E-07 1.7E-11 76.9 7.6 97 100-197 73-182 (189)
214 2hxs_A RAB-26, RAS-related pro 98.4 2.9E-07 9.7E-12 77.0 5.9 58 216-274 5-68 (178)
215 2o52_A RAS-related protein RAB 98.4 1.7E-07 5.7E-12 81.0 4.5 100 100-200 78-185 (200)
216 2fn4_A P23, RAS-related protei 98.4 5E-07 1.7E-11 75.4 7.3 57 216-274 8-69 (181)
217 1f6b_A SAR1; gtpases, N-termin 98.4 1.8E-07 6.1E-12 80.8 4.6 55 217-273 25-80 (198)
218 3reg_A RHO-like small GTPase; 98.4 7.7E-08 2.6E-12 82.3 2.2 100 100-200 75-185 (194)
219 2gf9_A RAS-related protein RAB 98.4 8.8E-08 3E-12 81.6 2.5 100 100-200 75-182 (189)
220 3th5_A RAS-related C3 botulinu 97.8 3.6E-08 1.2E-12 85.2 0.0 98 100-198 82-200 (204)
221 2bcg_Y Protein YP2, GTP-bindin 98.4 4.1E-07 1.4E-11 78.5 6.7 57 216-273 7-68 (206)
222 1ky3_A GTP-binding protein YPT 98.4 2.4E-07 8.1E-12 77.5 5.0 57 216-273 7-69 (182)
223 1r8s_A ADP-ribosylation factor 98.4 2.6E-07 8.8E-12 76.2 5.1 54 218-273 1-55 (164)
224 3bc1_A RAS-related protein RAB 98.4 4.7E-07 1.6E-11 76.4 6.9 57 216-273 10-81 (195)
225 2o52_A RAS-related protein RAB 98.4 3.4E-07 1.2E-11 79.0 6.0 58 215-273 23-85 (200)
226 1zd9_A ADP-ribosylation factor 98.4 4.1E-07 1.4E-11 77.5 6.4 57 216-273 21-78 (188)
227 2iwr_A Centaurin gamma 1; ANK 98.4 5E-07 1.7E-11 75.7 6.7 57 216-273 6-65 (178)
228 3j2k_7 ERF3, eukaryotic polype 98.4 2.6E-07 8.7E-12 90.4 5.6 58 216-273 16-106 (439)
229 2atv_A RERG, RAS-like estrogen 98.4 6.3E-07 2.1E-11 76.7 7.4 57 217-274 28-88 (196)
230 2fh5_B SR-beta, signal recogni 98.4 5.8E-07 2E-11 77.9 7.3 99 100-199 58-212 (214)
231 2ew1_A RAS-related protein RAB 98.4 2.3E-07 7.8E-12 80.7 4.6 100 100-200 79-186 (201)
232 2q3h_A RAS homolog gene family 98.4 1.2E-07 4E-12 81.4 2.8 101 100-201 72-193 (201)
233 1m2o_B GTP-binding protein SAR 98.4 8.7E-08 3E-12 82.2 1.9 98 100-198 71-187 (190)
234 1lnz_A SPO0B-associated GTP-bi 98.4 2.3E-07 7.9E-12 88.0 4.9 100 100-202 210-329 (342)
235 2q3h_A RAS homolog gene family 98.4 4.8E-07 1.6E-11 77.6 6.3 56 216-273 19-79 (201)
236 4gzl_A RAS-related C3 botulinu 98.4 1.3E-07 4.4E-12 82.1 2.6 99 100-199 82-201 (204)
237 3cpj_B GTP-binding protein YPT 98.4 4.6E-07 1.6E-11 79.5 6.2 58 216-273 12-73 (223)
238 2atv_A RERG, RAS-like estrogen 98.4 7.3E-07 2.5E-11 76.3 7.3 99 100-200 80-188 (196)
239 3vqt_A RF-3, peptide chain rel 98.4 8.2E-07 2.8E-11 89.3 8.8 90 71-161 73-166 (548)
240 3j25_A Tetracycline resistance 98.4 4.4E-07 1.5E-11 92.9 6.9 90 71-161 40-133 (638)
241 3q85_A GTP-binding protein REM 98.4 4.7E-07 1.6E-11 75.0 5.9 57 217-274 2-63 (169)
242 2gf0_A GTP-binding protein DI- 98.3 7.5E-07 2.6E-11 75.9 7.3 56 216-273 7-67 (199)
243 3oes_A GTPase rhebl1; small GT 98.3 4E-07 1.4E-11 78.4 5.6 56 216-273 23-83 (201)
244 3zvr_A Dynamin-1; hydrolase, D 98.3 8.3E-07 2.8E-11 92.2 8.9 64 182-247 18-81 (772)
245 2ew1_A RAS-related protein RAB 98.3 6.1E-07 2.1E-11 78.0 6.8 57 216-273 25-86 (201)
246 3llu_A RAS-related GTP-binding 98.3 2.7E-07 9.2E-12 79.3 4.3 97 100-198 73-192 (196)
247 1wms_A RAB-9, RAB9, RAS-relate 98.3 4.1E-07 1.4E-11 76.0 5.2 100 100-200 60-171 (177)
248 2yc2_C IFT27, small RAB-relate 98.3 2.2E-07 7.4E-12 79.7 3.5 58 216-273 19-84 (208)
249 3dz8_A RAS-related protein RAB 98.3 1.8E-07 6.1E-12 79.9 2.9 58 216-273 22-83 (191)
250 2fv8_A H6, RHO-related GTP-bin 98.3 5.9E-07 2E-11 77.8 6.2 56 217-273 25-84 (207)
251 2gj8_A MNME, tRNA modification 98.3 3.6E-07 1.2E-11 77.1 4.6 83 114-201 77-164 (172)
252 3l0i_B RAS-related protein RAB 98.3 2.1E-07 7.2E-12 80.0 3.1 57 216-273 32-93 (199)
253 4gzl_A RAS-related C3 botulinu 98.3 7.4E-07 2.5E-11 77.2 6.5 56 216-273 29-89 (204)
254 3iby_A Ferrous iron transport 98.3 1.4E-07 4.7E-12 85.8 1.9 80 119-200 82-164 (256)
255 2j1l_A RHO-related GTP-binding 98.3 8.2E-07 2.8E-11 77.5 6.8 56 216-273 33-93 (214)
256 2bcg_Y Protein YP2, GTP-bindin 98.3 1.7E-07 5.6E-12 81.0 2.3 101 100-201 61-169 (206)
257 3c5c_A RAS-like protein 12; GD 98.3 9.5E-07 3.3E-11 75.3 7.0 57 216-274 20-81 (187)
258 2gco_A H9, RHO-related GTP-bin 98.3 7.9E-07 2.7E-11 76.6 6.4 58 215-273 23-84 (201)
259 2fv8_A H6, RHO-related GTP-bin 98.3 2.5E-07 8.4E-12 80.2 3.2 100 100-200 77-197 (207)
260 2fu5_C RAS-related protein RAB 98.3 2.1E-07 7.2E-12 78.4 2.6 57 216-273 7-68 (183)
261 2cxx_A Probable GTP-binding pr 98.3 4E-06 1.4E-10 70.6 10.5 81 118-201 80-182 (190)
262 3cbq_A GTP-binding protein REM 98.3 4.1E-07 1.4E-11 78.4 4.3 57 216-273 22-83 (195)
263 1g7s_A Translation initiation 98.3 2.7E-07 9.3E-12 93.6 3.6 102 100-202 74-217 (594)
264 3geh_A MNME, tRNA modification 98.3 2.3E-07 7.8E-12 91.5 3.0 99 100-201 276-382 (462)
265 2hup_A RAS-related protein RAB 98.3 7.9E-07 2.7E-11 76.8 5.8 57 216-273 28-89 (201)
266 3izq_1 HBS1P, elongation facto 98.3 2.7E-07 9.1E-12 94.0 3.1 58 216-273 166-256 (611)
267 3izy_P Translation initiation 98.3 2.7E-08 9.3E-13 99.7 -4.1 134 100-234 56-211 (537)
268 1vg8_A RAS-related protein RAB 98.3 1.5E-07 5.2E-12 80.9 1.0 101 100-201 61-173 (207)
269 1nrj_B SR-beta, signal recogni 98.3 3.4E-07 1.1E-11 79.7 3.2 55 216-274 11-67 (218)
270 2cjw_A GTP-binding protein GEM 98.3 5.2E-07 1.8E-11 77.6 4.3 57 217-273 6-67 (192)
271 1mh1_A RAC1; GTP-binding, GTPa 98.3 1.3E-06 4.3E-11 73.4 6.6 56 216-273 4-64 (186)
272 3cpj_B GTP-binding protein YPT 98.3 1.7E-07 5.9E-12 82.3 1.3 100 100-200 66-173 (223)
273 2b6h_A ADP-ribosylation factor 98.3 6.9E-07 2.3E-11 76.6 5.0 57 216-274 28-85 (192)
274 3lvq_E ARF-GAP with SH3 domain 98.3 3.7E-07 1.3E-11 90.2 3.7 117 85-202 353-483 (497)
275 3q3j_B RHO-related GTP-binding 98.3 2.7E-07 9.3E-12 80.8 2.4 101 100-201 79-201 (214)
276 3mca_A HBS1, elongation factor 98.3 1.9E-07 6.4E-12 94.8 1.5 57 216-272 176-265 (592)
277 2zej_A Dardarin, leucine-rich 98.2 9.8E-07 3.4E-11 74.9 5.6 56 218-273 3-67 (184)
278 3reg_A RHO-like small GTPase; 98.2 9.4E-07 3.2E-11 75.4 5.5 56 216-273 22-82 (194)
279 3qq5_A Small GTP-binding prote 98.2 6.8E-07 2.3E-11 87.1 5.0 120 79-201 63-194 (423)
280 3p26_A Elongation factor 1 alp 98.2 4.1E-07 1.4E-11 89.9 3.5 57 217-273 33-122 (483)
281 3p32_A Probable GTPase RV1496/ 98.2 1.2E-06 4.1E-11 83.2 6.3 85 116-202 188-283 (355)
282 2e87_A Hypothetical protein PH 98.2 5.7E-06 2E-10 78.4 10.9 85 118-202 244-335 (357)
283 3llu_A RAS-related GTP-binding 98.2 1.3E-06 4.3E-11 75.0 5.8 59 216-274 19-81 (196)
284 2iwr_A Centaurin gamma 1; ANK 98.2 1.8E-06 6.2E-11 72.2 6.6 94 101-200 59-166 (178)
285 2f7s_A C25KG, RAS-related prot 98.2 6.5E-07 2.2E-11 77.8 3.9 58 215-273 23-95 (217)
286 1m7b_A RND3/RHOE small GTP-bin 98.2 1.9E-06 6.4E-11 73.0 6.6 57 216-273 6-66 (184)
287 3lvq_E ARF-GAP with SH3 domain 98.2 9.2E-07 3.2E-11 87.3 5.2 54 216-273 321-377 (497)
288 3oes_A GTPase rhebl1; small GT 98.2 2.4E-07 8.3E-12 79.8 0.8 101 100-201 76-185 (201)
289 2g3y_A GTP-binding protein GEM 98.2 1.2E-06 4E-11 77.3 4.9 56 217-272 37-97 (211)
290 3l0i_B RAS-related protein RAB 98.2 5E-08 1.7E-12 84.0 -3.9 97 100-199 86-192 (199)
291 2j0v_A RAC-like GTP-binding pr 98.2 2.2E-06 7.6E-11 74.1 6.6 56 216-273 8-68 (212)
292 3cbq_A GTP-binding protein REM 98.2 3.3E-06 1.1E-10 72.7 7.6 98 102-200 78-185 (195)
293 2dy1_A Elongation factor G; tr 98.2 5.7E-06 2E-10 85.0 10.6 88 72-160 48-139 (665)
294 3q5d_A Atlastin-1; G protein, 98.2 6.6E-07 2.3E-11 87.7 3.4 22 219-240 69-90 (447)
295 3t5d_A Septin-7; GTP-binding p 98.2 3.8E-06 1.3E-10 76.6 8.2 80 121-200 116-201 (274)
296 2wkq_A NPH1-1, RAS-related C3 98.2 6.2E-07 2.1E-11 82.8 2.9 100 100-200 207-327 (332)
297 3c5h_A Glucocorticoid receptor 98.2 5.4E-06 1.8E-10 74.8 8.9 80 120-199 162-251 (255)
298 3c5c_A RAS-like protein 12; GD 98.2 1.3E-06 4.4E-11 74.5 4.5 98 100-199 73-182 (187)
299 3t34_A Dynamin-related protein 98.2 2.6E-06 8.9E-11 80.8 7.1 25 218-242 35-59 (360)
300 2f9l_A RAB11B, member RAS onco 98.2 3.3E-06 1.1E-10 72.6 7.1 58 217-274 5-66 (199)
301 2atx_A Small GTP binding prote 98.2 2.1E-06 7.1E-11 73.1 5.8 56 216-273 17-77 (194)
302 3bwd_D RAC-like GTP-binding pr 98.1 6.6E-07 2.2E-11 75.0 2.2 55 217-273 8-67 (182)
303 1zo1_I IF2, translation initia 98.1 1.7E-07 5.8E-12 93.2 -1.8 99 100-199 55-163 (501)
304 3ihw_A Centg3; RAS, centaurin, 98.1 3.2E-06 1.1E-10 72.0 6.4 94 101-200 72-177 (184)
305 3th5_A RAS-related C3 botulinu 97.4 3.2E-07 1.1E-11 79.1 0.0 56 216-273 29-89 (204)
306 3ihw_A Centg3; RAS, centaurin, 98.1 3.5E-06 1.2E-10 71.8 6.5 57 216-273 19-78 (184)
307 1m7b_A RND3/RHOE small GTP-bin 98.1 6.9E-07 2.4E-11 75.7 1.9 100 100-200 59-180 (184)
308 3a1s_A Iron(II) transport prot 98.1 1.6E-06 5.5E-11 78.7 4.4 81 119-201 82-165 (258)
309 3t1o_A Gliding protein MGLA; G 98.1 2.7E-06 9.2E-11 71.9 5.6 26 216-241 13-38 (198)
310 1dar_A EF-G, elongation factor 98.1 6.2E-06 2.1E-10 85.1 9.1 87 74-161 53-143 (691)
311 1oix_A RAS-related protein RAB 98.1 4.6E-06 1.6E-10 71.4 6.8 58 216-274 28-90 (191)
312 1gwn_A RHO-related GTP-binding 98.1 5E-06 1.7E-10 72.2 7.1 57 216-273 27-87 (205)
313 2h5e_A Peptide chain release f 98.1 3.7E-06 1.3E-10 84.1 7.0 115 77-193 61-185 (529)
314 3o47_A ADP-ribosylation factor 98.1 2E-06 6.7E-11 80.9 4.6 54 216-273 164-220 (329)
315 3q3j_B RHO-related GTP-binding 98.1 4.2E-06 1.4E-10 73.1 6.4 57 216-273 26-86 (214)
316 2qag_A Septin-2, protein NEDD5 98.1 2E-06 7E-11 81.9 4.8 58 216-273 36-106 (361)
317 1udx_A The GTP-binding protein 98.1 2.3E-06 7.9E-11 83.2 5.1 55 219-274 159-217 (416)
318 3izy_P Translation initiation 98.1 3.3E-07 1.1E-11 91.8 -0.9 57 216-273 3-63 (537)
319 1gwn_A RHO-related GTP-binding 98.1 9E-07 3.1E-11 77.0 1.9 100 100-200 80-201 (205)
320 4dkx_A RAS-related protein RAB 98.1 3.2E-06 1.1E-10 74.8 5.3 97 102-199 68-172 (216)
321 3i8s_A Ferrous iron transport 98.1 8E-07 2.7E-11 81.3 1.3 82 118-201 83-167 (274)
322 3dpu_A RAB family protein; roc 98.0 1.5E-06 5.2E-11 86.8 2.9 99 100-201 102-206 (535)
323 1f60_A Elongation factor EEF1A 98.0 8.1E-07 2.8E-11 87.3 0.4 58 216-273 6-96 (458)
324 1d2e_A Elongation factor TU (E 98.0 3.3E-06 1.1E-10 81.3 4.6 57 217-273 3-77 (397)
325 2rdo_7 EF-G, elongation factor 98.0 2.3E-05 7.8E-10 81.0 11.2 89 72-161 49-148 (704)
326 2aka_B Dynamin-1; fusion prote 98.0 3.1E-06 1.1E-10 77.3 4.2 91 109-199 150-249 (299)
327 1wb1_A Translation elongation 98.0 1.7E-06 5.8E-11 85.6 2.6 57 216-272 18-83 (482)
328 2elf_A Protein translation elo 98.0 2.3E-06 7.8E-11 81.9 3.1 47 219-274 23-72 (370)
329 1zun_B Sulfate adenylate trans 98.0 4.3E-06 1.5E-10 81.5 5.0 24 217-240 24-47 (434)
330 2wkq_A NPH1-1, RAS-related C3 98.0 8.4E-06 2.9E-10 75.1 6.5 56 216-273 154-214 (332)
331 3dpu_A RAB family protein; roc 98.0 1.2E-05 4E-10 80.4 7.9 53 187-241 13-65 (535)
332 2wji_A Ferrous iron transport 98.0 3.9E-06 1.3E-10 69.9 3.8 79 119-199 80-161 (165)
333 1kk1_A EIF2gamma; initiation o 98.0 5.3E-06 1.8E-10 80.1 5.1 41 216-256 9-51 (410)
334 2c78_A Elongation factor TU-A; 98.0 2.7E-06 9.3E-11 82.0 2.9 58 216-273 10-86 (405)
335 1yrb_A ATP(GTP)binding protein 98.0 1.5E-05 5.2E-10 71.3 7.5 102 100-202 113-256 (262)
336 1zo1_I IF2, translation initia 97.9 1.2E-06 4E-11 87.2 0.1 57 216-273 3-62 (501)
337 1jwy_B Dynamin A GTPase domain 97.9 1.9E-05 6.5E-10 72.7 8.1 103 100-202 135-261 (315)
338 1pui_A ENGB, probable GTP-bind 97.9 5.4E-05 1.9E-09 65.0 10.0 84 119-202 107-198 (210)
339 2zej_A Dardarin, leucine-rich 97.9 7E-06 2.4E-10 69.6 4.2 99 102-201 62-176 (184)
340 4fn5_A EF-G 1, elongation fact 97.9 2.5E-05 8.5E-10 80.8 9.2 89 71-160 51-150 (709)
341 2xex_A Elongation factor G; GT 97.9 1.8E-05 6.3E-10 81.6 8.1 85 77-162 54-142 (693)
342 3zvr_A Dynamin-1; hydrolase, D 97.9 6E-06 2.1E-10 85.8 4.2 100 100-199 154-274 (772)
343 2qm8_A GTPase/ATPase; G protei 97.9 7.2E-06 2.5E-10 77.4 4.3 23 217-239 55-77 (337)
344 1s0u_A EIF-2-gamma, translatio 97.9 9.3E-06 3.2E-10 78.4 5.2 40 217-256 8-49 (408)
345 3tr5_A RF-3, peptide chain rel 97.9 1.8E-06 6.1E-11 86.4 -0.1 58 217-274 13-94 (528)
346 1jny_A EF-1-alpha, elongation 97.9 3.7E-06 1.3E-10 81.9 2.1 57 217-273 6-95 (435)
347 3k53_A Ferrous iron transport 97.9 3E-06 1E-10 77.1 1.2 82 119-202 80-165 (271)
348 2wjg_A FEOB, ferrous iron tran 97.9 4E-06 1.4E-10 70.7 1.8 83 119-202 84-168 (188)
349 2qtf_A Protein HFLX, GTP-bindi 97.8 5.6E-05 1.9E-09 72.0 9.9 92 111-202 248-353 (364)
350 3r7w_A Gtpase1, GTP-binding pr 97.8 3.1E-05 1.1E-09 71.8 7.9 93 100-194 56-172 (307)
351 4dkx_A RAS-related protein RAB 97.8 1.7E-05 5.9E-10 70.0 5.7 56 217-273 13-73 (216)
352 2p67_A LAO/AO transport system 97.8 8.1E-06 2.8E-10 77.0 3.3 23 217-239 56-78 (341)
353 3sjy_A Translation initiation 97.8 7.3E-06 2.5E-10 79.0 2.9 25 216-240 7-31 (403)
354 3p32_A Probable GTPase RV1496/ 97.8 1.2E-05 4.2E-10 76.2 4.3 23 216-238 78-100 (355)
355 2g3y_A GTP-binding protein GEM 97.8 3.1E-05 1.1E-09 68.0 6.3 83 118-200 109-200 (211)
356 2p67_A LAO/AO transport system 97.8 3.4E-05 1.2E-09 72.7 7.0 96 100-201 153-259 (341)
357 3lxx_A GTPase IMAP family memb 97.8 5E-05 1.7E-09 67.3 7.5 101 100-201 82-212 (239)
358 2j69_A Bacterial dynamin-like 97.8 5.6E-05 1.9E-09 78.0 8.8 101 100-200 178-322 (695)
359 3b1v_A Ferrous iron uptake tra 97.8 5.1E-06 1.7E-10 76.1 0.8 81 119-201 79-162 (272)
360 1r5b_A Eukaryotic peptide chai 97.7 7.4E-06 2.5E-10 80.7 1.5 58 216-273 42-132 (467)
361 2xex_A Elongation factor G; GT 97.7 9.4E-06 3.2E-10 83.8 2.2 58 217-274 10-87 (693)
362 2h5e_A Peptide chain release f 97.7 1.4E-05 4.6E-10 80.1 3.3 58 217-274 13-94 (529)
363 2wsm_A Hydrogenase expression/ 97.7 1.6E-05 5.4E-10 69.2 3.3 24 217-240 30-53 (221)
364 2xtp_A GTPase IMAP family memb 97.7 2.4E-05 8.1E-10 70.2 4.4 101 100-202 75-207 (260)
365 3sop_A Neuronal-specific septi 97.7 2.3E-05 7.7E-10 71.7 4.3 57 218-274 3-72 (270)
366 2qag_B Septin-6, protein NEDD5 97.7 3.9E-05 1.3E-09 74.7 6.1 58 217-274 42-107 (427)
367 1nrj_B SR-beta, signal recogni 97.7 1.1E-05 3.9E-10 69.9 2.0 89 100-189 59-170 (218)
368 1udx_A The GTP-binding protein 97.7 6E-05 2.1E-09 73.2 7.3 88 115-202 230-324 (416)
369 2qnr_A Septin-2, protein NEDD5 97.7 2.4E-05 8.1E-10 72.6 4.2 58 216-273 17-87 (301)
370 1tq4_A IIGP1, interferon-induc 97.7 6.9E-05 2.4E-09 72.7 7.3 57 218-274 70-132 (413)
371 2www_A Methylmalonic aciduria 97.6 0.00015 5.2E-09 68.5 9.2 83 117-201 184-277 (349)
372 1g7s_A Translation initiation 97.6 1.4E-05 4.8E-10 81.0 1.5 56 216-273 4-81 (594)
373 3lxw_A GTPase IMAP family memb 97.6 4.4E-05 1.5E-09 68.5 4.3 102 100-202 74-207 (247)
374 2qag_C Septin-7; cell cycle, c 97.5 3.4E-05 1.2E-09 75.0 3.3 60 215-274 29-100 (418)
375 2wsm_A Hydrogenase expression/ 97.5 0.00011 3.6E-09 63.8 6.1 80 120-201 129-212 (221)
376 3avx_A Elongation factor TS, e 97.5 3.8E-05 1.3E-09 82.8 3.2 58 215-272 294-369 (1289)
377 1wxq_A GTP-binding protein; st 97.5 2.5E-05 8.7E-10 75.3 1.5 49 147-195 214-262 (397)
378 1dar_A EF-G, elongation factor 97.5 4.2E-05 1.4E-09 78.8 3.1 58 217-274 12-89 (691)
379 2cjw_A GTP-binding protein GEM 97.5 0.00023 7.7E-09 60.8 7.1 83 118-200 78-169 (192)
380 1n0u_A EF-2, elongation factor 97.4 5.2E-05 1.8E-09 79.9 3.0 25 217-241 19-43 (842)
381 3cb4_D GTP-binding protein LEP 97.4 5.4E-05 1.8E-09 76.8 2.7 58 217-274 4-83 (599)
382 1n0u_A EF-2, elongation factor 97.4 0.0001 3.4E-09 77.7 4.7 89 72-161 56-164 (842)
383 2qag_A Septin-2, protein NEDD5 97.4 0.00017 5.8E-09 68.5 5.7 79 122-200 147-231 (361)
384 2rdo_7 EF-G, elongation factor 97.4 0.00013 4.4E-09 75.4 5.2 58 217-274 10-94 (704)
385 2hf9_A Probable hydrogenase ni 97.4 8E-05 2.7E-09 64.9 3.1 24 217-240 38-61 (226)
386 2j37_W Signal recognition part 97.4 0.0001 3.5E-09 73.3 4.1 31 216-246 100-136 (504)
387 3r7w_B Gtpase2, GTP-binding pr 97.3 0.00015 5.2E-09 68.2 4.9 57 219-275 1-59 (331)
388 2x2e_A Dynamin-1; nitration, h 97.3 5.9E-05 2E-09 71.3 1.9 91 109-199 155-254 (353)
389 3c5h_A Glucocorticoid receptor 97.3 6.6E-05 2.2E-09 67.6 1.7 26 215-240 17-51 (255)
390 2ywe_A GTP-binding protein LEP 97.3 6.1E-05 2.1E-09 76.4 1.6 58 217-274 6-85 (600)
391 2f9l_A RAB11B, member RAS onco 97.2 0.00033 1.1E-08 59.8 5.2 86 116-201 73-166 (199)
392 3ney_A 55 kDa erythrocyte memb 97.2 3E-05 1E-09 67.8 -1.8 55 219-273 21-77 (197)
393 1yrb_A ATP(GTP)binding protein 97.2 5.5E-05 1.9E-09 67.5 -0.1 33 217-249 14-51 (262)
394 2hf9_A Probable hydrogenase ni 97.1 0.0013 4.6E-08 56.9 7.8 78 121-200 140-221 (226)
395 4ido_A Atlastin-1; GTPase, GTP 97.0 0.00094 3.2E-08 65.3 6.8 61 218-278 68-156 (457)
396 2qpt_A EH domain-containing pr 97.0 0.00078 2.7E-08 67.6 6.4 73 100-172 158-243 (550)
397 1ko7_A HPR kinase/phosphatase; 97.0 0.00093 3.2E-08 62.4 6.0 96 140-241 72-168 (314)
398 2dy1_A Elongation factor G; tr 96.9 0.00079 2.7E-08 69.0 5.1 58 217-274 9-86 (665)
399 3t34_A Dynamin-related protein 96.8 0.00076 2.6E-08 63.6 4.1 87 111-199 163-257 (360)
400 2qm8_A GTPase/ATPase; G protei 96.7 0.0021 7.3E-08 60.3 6.3 84 117-202 165-260 (337)
401 2v3c_C SRP54, signal recogniti 96.6 0.00046 1.6E-08 67.2 1.3 23 217-239 99-121 (432)
402 2ged_A SR-beta, signal recogni 96.6 0.00037 1.3E-08 58.7 0.3 72 100-171 95-180 (193)
403 1cip_A Protein (guanine nucleo 96.5 0.00041 1.4E-08 65.8 -0.1 97 103-200 200-341 (353)
404 2qnr_A Septin-2, protein NEDD5 96.5 0.0036 1.2E-07 57.8 6.3 77 121-198 127-209 (301)
405 3szr_A Interferon-induced GTP- 96.3 0.0026 9E-08 64.5 4.5 22 219-240 47-68 (608)
406 1kgd_A CASK, peripheral plasma 96.3 0.0012 4.1E-08 55.9 1.7 36 219-254 7-43 (180)
407 2qag_C Septin-7; cell cycle, c 96.3 0.0037 1.3E-07 60.6 5.3 77 121-197 139-221 (418)
408 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0014 4.6E-08 62.4 1.8 98 102-200 207-350 (362)
409 3l82_B F-box only protein 4; T 96.1 0.011 3.7E-07 52.3 7.0 89 108-196 113-216 (227)
410 1oix_A RAS-related protein RAB 96.1 0.01 3.4E-07 50.2 6.5 84 116-199 97-188 (191)
411 3r7w_B Gtpase2, GTP-binding pr 96.1 0.0051 1.7E-07 57.8 4.8 80 115-195 67-166 (331)
412 3dm5_A SRP54, signal recogniti 95.9 0.011 3.8E-07 57.6 6.8 23 216-238 99-121 (443)
413 1azs_C GS-alpha; complex (lyas 95.9 0.0033 1.1E-07 60.7 2.7 54 108-161 228-298 (402)
414 3vqt_A RF-3, peptide chain rel 95.8 0.0053 1.8E-07 61.5 4.0 57 219-275 33-113 (548)
415 1ye8_A Protein THEP1, hypothet 95.8 0.0033 1.1E-07 53.5 2.1 23 219-241 2-24 (178)
416 1ex7_A Guanylate kinase; subst 95.7 0.0029 1E-07 54.5 1.5 21 220-240 4-24 (186)
417 3ohm_A Guanine nucleotide-bind 95.7 0.0039 1.3E-07 58.5 2.3 97 102-199 172-314 (327)
418 1lvg_A Guanylate kinase, GMP k 95.7 0.0038 1.3E-07 53.7 2.0 22 219-240 6-27 (198)
419 3tau_A Guanylate kinase, GMP k 95.6 0.0047 1.6E-07 53.5 2.5 23 219-241 10-32 (208)
420 2qor_A Guanylate kinase; phosp 95.6 0.0028 9.6E-08 54.5 0.9 23 218-240 13-35 (204)
421 2xtz_A Guanine nucleotide-bind 95.5 0.0032 1.1E-07 59.7 1.1 92 108-199 194-341 (354)
422 3j25_A Tetracycline resistance 95.4 0.0027 9.3E-08 64.7 0.2 57 219-275 4-80 (638)
423 1h65_A Chloroplast outer envel 95.4 0.017 5.9E-07 51.9 5.3 64 100-163 91-170 (270)
424 1s96_A Guanylate kinase, GMP k 95.4 0.0045 1.5E-07 54.5 1.4 23 219-241 18-40 (219)
425 4fid_A G protein alpha subunit 95.3 0.013 4.4E-07 55.2 4.5 60 102-161 166-242 (340)
426 1zp6_A Hypothetical protein AT 95.3 0.0085 2.9E-07 50.4 2.9 23 218-240 10-32 (191)
427 1znw_A Guanylate kinase, GMP k 95.2 0.0066 2.3E-07 52.3 2.0 22 219-240 22-43 (207)
428 3tr0_A Guanylate kinase, GMP k 95.1 0.0072 2.5E-07 51.4 2.0 22 219-240 9-30 (205)
429 3c8u_A Fructokinase; YP_612366 95.1 0.0096 3.3E-07 51.3 2.8 23 217-239 22-44 (208)
430 1z6g_A Guanylate kinase; struc 95.1 0.0075 2.6E-07 52.7 2.0 22 219-240 25-46 (218)
431 3a00_A Guanylate kinase, GMP k 95.0 0.008 2.7E-07 50.9 1.9 21 220-240 4-24 (186)
432 2j37_W Signal recognition part 94.8 0.025 8.6E-07 56.0 5.1 77 120-200 213-310 (504)
433 4gp7_A Metallophosphoesterase; 94.8 0.011 3.9E-07 49.4 2.2 20 219-238 11-30 (171)
434 3tif_A Uncharacterized ABC tra 94.7 0.012 4E-07 52.3 2.3 23 219-241 33-55 (235)
435 1np6_A Molybdopterin-guanine d 94.7 0.011 3.8E-07 50.2 2.0 22 219-240 8-29 (174)
436 2pcj_A ABC transporter, lipopr 94.7 0.012 4E-07 51.9 2.1 23 219-241 32-54 (224)
437 2j41_A Guanylate kinase; GMP, 94.6 0.014 4.6E-07 49.6 2.4 24 218-241 7-30 (207)
438 3l2o_B F-box only protein 4; s 94.6 0.04 1.4E-06 50.9 5.6 88 110-197 200-302 (312)
439 3asz_A Uridine kinase; cytidin 94.6 0.014 4.9E-07 49.9 2.4 24 217-240 6-29 (211)
440 2cbz_A Multidrug resistance-as 94.5 0.015 5E-07 51.7 2.3 23 219-241 33-55 (237)
441 2bdt_A BH3686; alpha-beta prot 94.5 0.014 4.7E-07 49.2 2.0 21 219-239 4-24 (189)
442 1kag_A SKI, shikimate kinase I 94.4 0.014 4.9E-07 48.1 2.0 22 219-240 6-27 (173)
443 1g6h_A High-affinity branched- 94.4 0.016 5.4E-07 52.1 2.3 23 219-241 35-57 (257)
444 2v9p_A Replication protein E1; 94.4 0.015 5.1E-07 54.0 2.2 22 219-240 128-149 (305)
445 1mv5_A LMRA, multidrug resista 94.4 0.017 5.9E-07 51.4 2.5 23 219-241 30-52 (243)
446 1ly1_A Polynucleotide kinase; 94.4 0.02 6.7E-07 47.4 2.7 22 218-239 3-24 (181)
447 2onk_A Molybdate/tungstate ABC 94.4 0.016 5.5E-07 51.7 2.3 23 219-241 26-48 (240)
448 1b0u_A Histidine permease; ABC 94.3 0.016 5.6E-07 52.3 2.3 23 219-241 34-56 (262)
449 2ff7_A Alpha-hemolysin translo 94.3 0.018 6.2E-07 51.5 2.5 23 219-241 37-59 (247)
450 2pze_A Cystic fibrosis transme 94.3 0.017 5.9E-07 51.0 2.3 23 219-241 36-58 (229)
451 1sgw_A Putative ABC transporte 94.3 0.017 6E-07 50.6 2.3 22 220-241 38-59 (214)
452 4g1u_C Hemin import ATP-bindin 94.3 0.017 5.8E-07 52.3 2.3 23 219-241 39-61 (266)
453 3lnc_A Guanylate kinase, GMP k 94.3 0.013 4.4E-07 51.3 1.4 22 219-240 29-51 (231)
454 3gfo_A Cobalt import ATP-bindi 94.2 0.018 6.1E-07 52.5 2.3 23 219-241 36-58 (275)
455 4eun_A Thermoresistant glucoki 94.2 0.019 6.4E-07 49.1 2.3 22 218-239 30-51 (200)
456 2eyu_A Twitching motility prot 94.2 0.017 5.8E-07 52.2 2.1 21 219-239 27-47 (261)
457 1ji0_A ABC transporter; ATP bi 94.2 0.019 6.5E-07 51.1 2.3 23 219-241 34-56 (240)
458 2d2e_A SUFC protein; ABC-ATPas 94.2 0.019 6.5E-07 51.4 2.3 22 219-240 31-52 (250)
459 3b85_A Phosphate starvation-in 94.2 0.017 6E-07 50.3 2.0 22 219-240 24-45 (208)
460 2bbw_A Adenylate kinase 4, AK4 94.2 0.021 7E-07 50.5 2.5 22 217-238 27-48 (246)
461 2olj_A Amino acid ABC transpor 94.1 0.019 6.5E-07 51.9 2.3 23 219-241 52-74 (263)
462 2f1r_A Molybdopterin-guanine d 94.1 0.0092 3.1E-07 50.5 0.1 22 219-240 4-25 (171)
463 2i3b_A HCR-ntpase, human cance 94.1 0.017 5.9E-07 49.6 1.8 22 219-240 3-24 (189)
464 2ghi_A Transport protein; mult 94.1 0.021 7.3E-07 51.4 2.5 22 219-240 48-69 (260)
465 2qi9_C Vitamin B12 import ATP- 94.1 0.02 6.8E-07 51.4 2.3 23 219-241 28-50 (249)
466 3lw7_A Adenylate kinase relate 94.1 0.021 7.2E-07 46.5 2.3 19 219-237 3-21 (179)
467 2ixe_A Antigen peptide transpo 94.1 0.02 6.9E-07 51.9 2.3 23 219-241 47-69 (271)
468 1vpl_A ABC transporter, ATP-bi 94.1 0.02 6.9E-07 51.5 2.3 23 219-241 43-65 (256)
469 2zu0_C Probable ATP-dependent 94.1 0.02 6.9E-07 51.8 2.3 22 219-240 48-69 (267)
470 2rhm_A Putative kinase; P-loop 94.0 0.025 8.7E-07 47.3 2.7 23 217-239 5-27 (193)
471 3uie_A Adenylyl-sulfate kinase 94.0 0.026 8.8E-07 48.2 2.7 24 217-240 25-48 (200)
472 3nh6_A ATP-binding cassette SU 94.0 0.015 5.2E-07 53.9 1.2 23 219-241 82-104 (306)
473 1cke_A CK, MSSA, protein (cyti 93.9 0.022 7.4E-07 49.2 2.2 23 218-240 6-28 (227)
474 3kb2_A SPBC2 prophage-derived 93.9 0.022 7.7E-07 46.6 2.2 22 219-240 3-24 (173)
475 2yz2_A Putative ABC transporte 93.9 0.023 7.7E-07 51.4 2.3 23 219-241 35-57 (266)
476 2qag_B Septin-6, protein NEDD5 93.9 0.032 1.1E-06 54.1 3.5 63 123-185 151-218 (427)
477 2ihy_A ABC transporter, ATP-bi 93.9 0.024 8.4E-07 51.7 2.5 23 219-241 49-71 (279)
478 2nq2_C Hypothetical ABC transp 93.9 0.023 7.8E-07 51.1 2.2 23 219-241 33-55 (253)
479 4fn5_A EF-G 1, elongation fact 93.9 0.031 1E-06 57.6 3.5 22 218-239 14-35 (709)
480 1knq_A Gluconate kinase; ALFA/ 93.8 0.028 9.5E-07 46.6 2.6 22 218-239 9-30 (175)
481 2xxa_A Signal recognition part 93.8 0.028 9.7E-07 54.5 3.0 23 216-238 99-121 (433)
482 2jaq_A Deoxyguanosine kinase; 93.8 0.023 8E-07 47.9 2.1 21 219-239 2-22 (205)
483 1qhx_A CPT, protein (chloramph 93.8 0.027 9.2E-07 46.6 2.5 22 219-240 5-26 (178)
484 3def_A T7I23.11 protein; chlor 93.8 0.05 1.7E-06 48.6 4.4 63 100-162 88-166 (262)
485 2if2_A Dephospho-COA kinase; a 93.7 0.024 8.1E-07 48.3 2.0 21 219-239 3-23 (204)
486 2dby_A GTP-binding protein; GD 93.7 0.092 3.2E-06 49.8 6.3 49 147-195 201-254 (368)
487 3t61_A Gluconokinase; PSI-biol 93.6 0.023 7.9E-07 48.4 1.8 23 218-240 19-41 (202)
488 1htw_A HI0065; nucleotide-bind 93.6 0.026 9E-07 47.0 2.0 23 219-241 35-57 (158)
489 3cm0_A Adenylate kinase; ATP-b 93.6 0.033 1.1E-06 46.4 2.7 23 217-239 4-26 (186)
490 2qt1_A Nicotinamide riboside k 93.6 0.037 1.3E-06 47.3 3.0 24 217-240 21-44 (207)
491 1jjv_A Dephospho-COA kinase; P 93.5 0.035 1.2E-06 47.3 2.8 22 218-239 3-24 (206)
492 1kht_A Adenylate kinase; phosp 93.5 0.032 1.1E-06 46.5 2.3 22 218-239 4-25 (192)
493 1nks_A Adenylate kinase; therm 93.5 0.031 1.1E-06 46.6 2.2 21 219-239 3-23 (194)
494 2pjz_A Hypothetical protein ST 93.4 0.033 1.1E-06 50.4 2.5 23 219-241 32-54 (263)
495 3tui_C Methionine import ATP-b 93.4 0.03 1E-06 53.2 2.3 23 219-241 56-78 (366)
496 3aez_A Pantothenate kinase; tr 93.4 0.034 1.2E-06 51.5 2.6 24 216-239 89-112 (312)
497 4a74_A DNA repair and recombin 93.4 0.028 9.6E-07 48.3 1.9 21 219-239 27-47 (231)
498 2pt7_A CAG-ALFA; ATPase, prote 93.3 0.031 1.1E-06 52.1 2.2 22 219-240 173-194 (330)
499 2v54_A DTMP kinase, thymidylat 93.3 0.036 1.2E-06 46.9 2.4 24 217-240 4-27 (204)
500 2gza_A Type IV secretion syste 93.2 0.031 1.1E-06 52.7 2.1 22 219-240 177-198 (361)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-42 Score=320.47 Aligned_cols=217 Identities=38% Similarity=0.693 Sum_probs=177.2
Q ss_pred ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCce
Q 020622 99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178 (323)
Q Consensus 99 ~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~ 178 (323)
.||||||||.+..+++.+.++++|+|++|+|+|+|.+..++.+.++++++|.++|+||+||++....+.|.+++++.+++
T Consensus 2 ~i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~ 81 (282)
T 1puj_A 2 TIQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIR 81 (282)
T ss_dssp -------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCC
T ss_pred CCcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCc
Confidence 38999999999999999999999999999999999999999999999999999999999999987788899999877888
Q ss_pred EEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEE
Q 020622 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV 258 (323)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~ 258 (323)
++++||+++.|+.+|.+.+.++......+...++..+.+++++++|+||||||||||+|.+++.+.+++.||||++.+++
T Consensus 82 ~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 161 (282)
T 1puj_A 82 SLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 161 (282)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCE
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEE
Confidence 99999999999999988887765543322233444556789999999999999999999999888999999999999988
Q ss_pred EeCCcEEEEecCCccCCCCCCHHHHHHHHhcccccccCcChHHHHHHHHHHHhcCCC
Q 020622 259 RFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPT 315 (323)
Q Consensus 259 ~~~~~~~liDTPGi~~~~~~d~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~~~ 315 (323)
.++.++.|+||||+..+...+.+...++++++++.+..++.++++.++++.|++...
T Consensus 162 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 218 (282)
T 1puj_A 162 KVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYP 218 (282)
T ss_dssp EETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCH
T ss_pred EeCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHhCh
Confidence 888899999999999988888888999999999998999999999999999987643
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=8.8e-36 Score=274.71 Aligned_cols=165 Identities=36% Similarity=0.687 Sum_probs=129.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceE
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~v 179 (323)
+|||||||.+..+++.+.++++|+|++|+|+|+|.+..++.+. ++ ++|.++|+||+||++....+.|.+++++.|+++
T Consensus 1 ~~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v 78 (262)
T 3cnl_A 1 MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV 78 (262)
T ss_dssp --------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE
T ss_pred CCCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE
Confidence 3899999999999999999999999999999999999887777 66 999999999999999877888999998888888
Q ss_pred EEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE
Q 020622 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (323)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~ 259 (323)
++|++++.|+++|.+.+.... .+++++|.||||||||+|+|.++..+.+++.||+|+..+++.
T Consensus 79 -~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~ 141 (262)
T 3cnl_A 79 -ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS 141 (262)
T ss_dssp -EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE
T ss_pred -EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE
Confidence 999999999888766543221 469999999999999999999988888999999999998888
Q ss_pred eCCcEEEEecCCccCCCC-CCHHHH
Q 020622 260 FGKDLEFLDSPGIIPMRI-SDQAAA 283 (323)
Q Consensus 260 ~~~~~~liDTPGi~~~~~-~d~~~~ 283 (323)
++.++.|+||||+..+.+ .+.+.+
T Consensus 142 ~~~~~~l~DtpG~~~~~~~~~~~~~ 166 (262)
T 3cnl_A 142 LENGVKILDTPGILYKNIFSEDLAA 166 (262)
T ss_dssp CTTSCEEESSCEECCCCCCSHHHHH
T ss_pred eCCCEEEEECCCcccCcCCCChhhc
Confidence 888999999999998877 555443
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.92 E-value=4.1e-25 Score=212.79 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHH----hHHHHHHH-HHhhCc---eE
Q 020622 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV 179 (323)
Q Consensus 108 ~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~----~~~~~~~~-~~~~g~---~v 179 (323)
..+.+.+....+.++++++|+|++++.+...+.+.+++.++|+++|+||+||++.. ...+|... +++.|+ .+
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v 138 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV 138 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence 45667777777899999999999999988888899999899999999999998753 34566543 455665 78
Q ss_pred EEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcC-----ccccccCCCCceee
Q 020622 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRV 254 (323)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~-----~~~~v~~~pgtT~~ 254 (323)
+++||++|.|+++|.+.+.++... .+++++|.||||||||+|+|++. ....+++.||||++
T Consensus 139 ~~iSA~~g~gi~~L~~~I~~~~~~--------------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~ 204 (369)
T 3ec1_A 139 CLVSAAKGIGMAKVMEAINRYREG--------------GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD 204 (369)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTT--------------SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred EEEECCCCCCHHHHHHHHHhhccc--------------CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe
Confidence 999999999999998887765421 25899999999999999999986 56788999999999
Q ss_pred EEEEEeCCcEEEEecCCccCC
Q 020622 255 LKWVRFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 255 ~~~~~~~~~~~liDTPGi~~~ 275 (323)
...+.++.++.++||||+..+
T Consensus 205 ~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 205 MIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp EEEEECSTTCEEEECCSCCCC
T ss_pred eEEEEeCCCeEEEeCCCcCcH
Confidence 988888888999999999854
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.91 E-value=1.1e-24 Score=209.72 Aligned_cols=154 Identities=26% Similarity=0.362 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHH----hHHHHHHH-HHhhCc---eE
Q 020622 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV 179 (323)
Q Consensus 108 ~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~----~~~~~~~~-~~~~g~---~v 179 (323)
+++.+.+....+.+|++++|+|++++.....+.+.+++.++|+++|+||+||++.. ...+|... +++.|+ .+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 45666666777788899999999988777778888888899999999999998654 35566544 455666 78
Q ss_pred EEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCc------cccccCCCCcee
Q 020622 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTR 253 (323)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~------~~~v~~~pgtT~ 253 (323)
+++||++|.|+++|.+.+.++... .+++++|.||||||||+|+|++.. ...++..||||+
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~~--------------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~ 202 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRGG--------------KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL 202 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHTT--------------SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred EEEeCCCCcCHHHHHhhhhhhccc--------------ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence 999999999999998887665421 258999999999999999999853 455789999999
Q ss_pred eEEEEEeCCcEEEEecCCccCC
Q 020622 254 VLKWVRFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 254 ~~~~~~~~~~~~liDTPGi~~~ 275 (323)
+...+.++.++.++||||+..+
T Consensus 203 ~~~~~~~~~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 203 DLIDIPLDEESSLYDTPGIINH 224 (368)
T ss_dssp CEEEEESSSSCEEEECCCBCCT
T ss_pred ceEEEEecCCeEEEeCCCcCcH
Confidence 9998888888999999999854
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=2.5e-22 Score=197.17 Aligned_cols=165 Identities=22% Similarity=0.312 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHhhCc-eEEEecC
Q 020622 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNG 184 (323)
Q Consensus 108 ~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~-~vi~iSa 184 (323)
.++.++....++++|++|+|+|++.+.+..+..+..++. ++|+++|+||+|+.+..+ ......+.++|. +++++||
T Consensus 69 ~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~lg~~~~~~iSA 147 (439)
T 1mky_A 69 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE-REVKPELYSLGFGEPIPVSA 147 (439)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHH-HHTHHHHGGGSSCSCEECBT
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH-HHHHHHHHhcCCCCEEEEec
Confidence 446667778899999999999999988877778888775 899999999999864311 122123445665 6899999
Q ss_pred cCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe-C
Q 020622 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-G 261 (323)
Q Consensus 185 ~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~ 261 (323)
++|.|+.+|.+.+.+..........+.......++|+++|.||||||||+|+|++.....+++.||||++.. .+.+ +
T Consensus 148 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred cCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 999999999887765543221000010012346899999999999999999999988778999999999853 2333 5
Q ss_pred CcEEEEecCCcc
Q 020622 262 KDLEFLDSPGII 273 (323)
Q Consensus 262 ~~~~liDTPGi~ 273 (323)
..+.++||||+.
T Consensus 228 ~~~~l~Dt~G~~ 239 (439)
T 1mky_A 228 RKYVFVDTAGLR 239 (439)
T ss_dssp EEEEESSCSCC-
T ss_pred EEEEEEECCCCc
Confidence 578899999985
No 6
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.5e-22 Score=198.72 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=114.5
Q ss_pred cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHH
Q 020622 100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh~-------~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||+. .++.++....++++|++|+|+|++.+.+..+..+.+++. ++|+++|+||+|+.+... ...+
T Consensus 55 l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~ 132 (436)
T 2hjg_A 55 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD 132 (436)
T ss_dssp EEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCS
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHH
Confidence 44567763 356667777889999999999999998887888888775 789999999999875421 1111
Q ss_pred HHHhhCc-eEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC
Q 020622 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (323)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p 249 (323)
+.++|. .++++||++|.|+.+|.+.+.+..++.. ........++|+++|.||||||||+|+|++.....+++.|
T Consensus 133 -~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~ 207 (436)
T 2hjg_A 133 -FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA 207 (436)
T ss_dssp -SGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---
T ss_pred -HHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCC
Confidence 234554 7899999999999999888766544211 1111234689999999999999999999998877789999
Q ss_pred CceeeEE--EEE-eCCcEEEEecCCccC
Q 020622 250 GVTRVLK--WVR-FGKDLEFLDSPGIIP 274 (323)
Q Consensus 250 gtT~~~~--~~~-~~~~~~liDTPGi~~ 274 (323)
|||++.. .+. .+..+.|+||||+..
T Consensus 208 gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 208 GTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp ------CCEEEEETTEEEEETTHHHHTC
T ss_pred CceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 9999853 222 355799999999963
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=8.3e-21 Score=187.22 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=118.6
Q ss_pred cccccch-------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHH
Q 020622 100 VQWYPGH-------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh-------~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||. +.++.++....++.+|++|+|+|++.+++..+..+.+++. ++|+++|+||+|+.+... .+.+
T Consensus 75 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~--~~~e 152 (456)
T 4dcu_A 75 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD 152 (456)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CC
T ss_pred EEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh--hHHH
Confidence 5567882 4667777888899999999999999998888888888886 789999999999875421 1222
Q ss_pred HHHhhC-ceEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC
Q 020622 171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (323)
Q Consensus 171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p 249 (323)
+..++ ..++++||++|.|+.+|.+.+.+...... ........++|+++|.+|||||||+|+|++.....+++.|
T Consensus 153 -~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~ 227 (456)
T 4dcu_A 153 -FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA 227 (456)
T ss_dssp -SGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--
T ss_pred -HHHcCCCceEEeecccccchHHHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCC
Confidence 23344 35789999999999999887765443211 1112235689999999999999999999998878899999
Q ss_pred CceeeE--EEEEe-CCcEEEEecCCccC
Q 020622 250 GVTRVL--KWVRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 250 gtT~~~--~~~~~-~~~~~liDTPGi~~ 274 (323)
|||++. ..+.. +..+.|+||||+..
T Consensus 228 gtt~~~~~~~~~~~~~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 228 GTTRDAVDTSFTYNQQEFVIVDTAGMRK 255 (456)
T ss_dssp ----CTTSEEEEETTEEEEETTGGGTTT
T ss_pred CeEEEEEEEEEEECCceEEEEECCCCCc
Confidence 999984 23333 55799999999864
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.83 E-value=1.8e-21 Score=182.82 Aligned_cols=140 Identities=21% Similarity=0.253 Sum_probs=107.4
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHh----HHHHHHHHHhhCceEEEecCcCC
Q 020622 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG 187 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~----~~~~~~~~~~~g~~vi~iSa~~g 187 (323)
.++++|+|++|+|++.|....+ .+.+++ .+++.++|+||+||++..+ .++|.++|.+.|++++++|+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4799999999999999988876 777777 4789999999999998744 67888889888999999999999
Q ss_pred CcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC-------CceeeEEEEEe
Q 020622 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRF 260 (323)
Q Consensus 188 ~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~ 260 (323)
.|+++|.+... .-.++|+|.+|||||||+|+|.+.....++..+ +||+..+++..
T Consensus 162 ~g~~~L~~~~~------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~ 223 (307)
T 1t9h_A 162 DSLADIIPHFQ------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT 223 (307)
T ss_dssp TTCTTTGGGGT------------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred CCHHHHHhhcC------------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence 99988766421 114899999999999999999987665555544 57777666666
Q ss_pred CCcEEEEecCCccCCC
Q 020622 261 GKDLEFLDSPGIIPMR 276 (323)
Q Consensus 261 ~~~~~liDTPGi~~~~ 276 (323)
. ..+++||||+....
T Consensus 224 ~-~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 224 S-GGLVADTPGFSSLE 238 (307)
T ss_dssp T-TEEEESSCSCSSCC
T ss_pred C-CEEEecCCCccccc
Confidence 5 56899999998644
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.80 E-value=3.1e-19 Score=167.20 Aligned_cols=138 Identities=23% Similarity=0.354 Sum_probs=105.9
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHh---HHHHHHHHHhhCceEEEecCcCCC
Q 020622 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~---~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
.++++|++++|+|+++|..+.+ .+.+++ .++|+++|+||+||.+..+ ..++.+++++.|+.++++||++|.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE 154 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3699999999999998754433 344444 3789999999999987652 566777777788899999999999
Q ss_pred cchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC-------CceeeEEEEEeC
Q 020622 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFG 261 (323)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~~ 261 (323)
|+++|.+.+. . -.++++|.+|+|||||+|+|. .....++... +||+....+...
T Consensus 155 gi~~L~~~l~---G---------------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~ 215 (302)
T 2yv5_A 155 GIDELVDYLE---G---------------FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG 215 (302)
T ss_dssp THHHHHHHTT---T---------------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred CHHHHHhhcc---C---------------cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence 9988766532 1 137999999999999999999 6655555544 377776666665
Q ss_pred CcEEEEecCCccC
Q 020622 262 KDLEFLDSPGIIP 274 (323)
Q Consensus 262 ~~~~liDTPGi~~ 274 (323)
...+++||||+..
T Consensus 216 ~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 216 KGSFVGDTPGFSK 228 (302)
T ss_dssp TTEEEESSCCCSS
T ss_pred CCcEEEECcCcCc
Confidence 5678999999963
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.77 E-value=5e-19 Score=169.36 Aligned_cols=141 Identities=23% Similarity=0.329 Sum_probs=106.9
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHh---HHHHHHHHHhhCceEEEecCcC
Q 020622 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL 186 (323)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~---~~~~~~~~~~~g~~vi~iSa~~ 186 (323)
+..++++|+|++| |++.|....+ .+.+++ .+++.++|+||+||++..+ ..+|..+|.+.|++++++|+.+
T Consensus 125 ~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3446999999965 7788765544 677776 3789999999999998765 6678888988999999999999
Q ss_pred CCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCcc-ccccCCC---C----ceeeEEEE
Q 020622 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP---G----VTRVLKWV 258 (323)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~-~~v~~~p---g----tT~~~~~~ 258 (323)
+.|+++|...+ .. -.++|+|.+|||||||+|.|.+... ..++... | +|+.....
T Consensus 203 ~~gl~~L~~~~---~G---------------~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~ 264 (358)
T 2rcn_A 203 QDGLKPLEEAL---TG---------------RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLY 264 (358)
T ss_dssp TBTHHHHHHHH---TT---------------SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEE
T ss_pred CcCHHHHHHhc---CC---------------CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEE
Confidence 99988776532 11 1479999999999999999998766 5555432 3 66666777
Q ss_pred EeCCcEEEEecCCccCC
Q 020622 259 RFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 259 ~~~~~~~liDTPGi~~~ 275 (323)
.+..+..++||||+...
T Consensus 265 ~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 265 HFPHGGDVIDSPGVREF 281 (358)
T ss_dssp ECTTSCEEEECHHHHTC
T ss_pred EECCCCEecCcccHHHh
Confidence 77667789999999753
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=8.7e-18 Score=157.14 Aligned_cols=140 Identities=21% Similarity=0.350 Sum_probs=100.0
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHh---HHHHHHHHHhhCceEEEecCcCCC
Q 020622 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~---~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
.++++|++|+|+|++++.... ..+..|+ .+.|+++|+||+||.+..+ ..+|.+.+... ..++.+||++|.
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~ 158 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGM 158 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCT
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCc
Confidence 468999999999999875433 2344444 3789999999999987654 34455544433 789999999999
Q ss_pred cchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCC-------CceeeEEEEEeC
Q 020622 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFG 261 (323)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p-------gtT~~~~~~~~~ 261 (323)
|++++.+.+. . -.++++|.+|+|||||+|+|.+.....++... ++|+....+...
T Consensus 159 gv~~lf~~l~---g---------------eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~ 220 (301)
T 1u0l_A 159 GIEELKEYLK---G---------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD 220 (301)
T ss_dssp THHHHHHHHS---S---------------SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT
T ss_pred CHHHHHHHhc---C---------------CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcC
Confidence 9988776532 1 13799999999999999999987655555433 366655555555
Q ss_pred CcEEEEecCCccCCC
Q 020622 262 KDLEFLDSPGIIPMR 276 (323)
Q Consensus 262 ~~~~liDTPGi~~~~ 276 (323)
...+++||||+....
T Consensus 221 ~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 221 FGGYVVDTPGFANLE 235 (301)
T ss_dssp TSCEEESSCSSTTCC
T ss_pred CCCEEEECcCCCccC
Confidence 567899999986543
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.50 E-value=9.5e-16 Score=146.39 Aligned_cols=156 Identities=18% Similarity=0.146 Sum_probs=108.7
Q ss_pred cCeEEEEEeCCCCCCCCcHHHHHHh----CCCCeEEEEeccCCccHHhHHHHHHHHHh-h-CceEEEecCcCCCcchhhh
Q 020622 121 MDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 121 aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~iiVlNK~DLl~~~~~~~~~~~~~~-~-g~~vi~iSa~~g~gi~~L~ 194 (323)
+|.+-.++|++.++...++.+.+++ ..++.++++||+|+++....+.|.++++. . +.....+++..+.+..++.
T Consensus 58 ~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (357)
T 2e87_A 58 RDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVA 137 (357)
T ss_dssp HHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 3455566777777778888888777 67889999999999999888889888875 2 4433444455555555555
Q ss_pred HHHHHhhhhh-------hhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcE
Q 020622 195 RLAKALASDV-------NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDL 264 (323)
Q Consensus 195 ~~l~~l~~~~-------~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~ 264 (323)
+.+..+.... ...++.........+|+++|.||||||||+|+|.+.. ..++..|++|++.....+ +..+
T Consensus 138 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~ 216 (357)
T 2e87_A 138 SVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRY 216 (357)
T ss_dssp HHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceE
Confidence 5444333221 1111122222456789999999999999999999876 567888999998765443 3458
Q ss_pred EEEecCCccCCCC
Q 020622 265 EFLDSPGIIPMRI 277 (323)
Q Consensus 265 ~liDTPGi~~~~~ 277 (323)
.++||||+.....
T Consensus 217 ~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 217 QIIDTPGLLDRPI 229 (357)
T ss_dssp EEEECTTTSSSCS
T ss_pred EEEeCCCccccch
Confidence 8999999975443
No 13
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.34 E-value=1.6e-14 Score=138.58 Aligned_cols=186 Identities=17% Similarity=0.115 Sum_probs=95.9
Q ss_pred CCCCCCCcchhhHhhhcccccCcceeeeeccccccccccchHHHHHHHHH--HHHhhcCeEEEEEeCCCCCCC-C-cHHH
Q 020622 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK--DQLKLMDVVIEVRDARIPLST-T-HPLM 141 (323)
Q Consensus 66 ~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~i~~~PGh~~k~~~~l~--~~i~~aDlIl~VvDar~~~~~-~-~~~i 141 (323)
..|-+ |.-|.++-+|.-...+++.+.|...|.+.| .....+.+. +.+++.|+||.|+|+|.+..+ . ...+
T Consensus 36 ~~~~~-~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q-----~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~l 109 (364)
T 2qtf_A 36 SPNVK-FYIQYDKLQQIKNDEEISTLIIFEQLKPRH-----FINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIEL 109 (364)
T ss_dssp SCBTT-TBSCHHHHHHHHTCTTCCEEEESSCCCHHH-----HHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CCCCc-ceechhHHHHHhhccCCCEEEECCCCCHHH-----HHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHH
Confidence 45544 445666666655588999999999887755 445666665 578999999999999988654 2 4445
Q ss_pred HHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecC--cC--CCcchhhhHHHHHhhhhhhhhh----ccCC-
Q 020622 142 DQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG--QL--GMGTMKLSRLAKALASDVNVKR----RSKG- 212 (323)
Q Consensus 142 ~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa--~~--g~gi~~L~~~l~~l~~~~~~~~----~~~~- 212 (323)
.++...+|.+ ..|..+++..+. +-+.. .. ......+.+.+..+........ ..++
T Consensus 110 a~l~~~~~rl--------------~~~~~l~~~~~~--i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~ 173 (364)
T 2qtf_A 110 ARLKYELPII--------------KETYTKSKIGEQ--QGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIES 173 (364)
T ss_dssp HHHHHHHHHH--------------HHC-----------------------CHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHhhhchhh--------------hhhhHHHHhcCC--CCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5443322211 233332222110 00000 00 0001122222222222211100 0000
Q ss_pred CCccceE-eeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEe-CCcEEEEecCCccC
Q 020622 213 LLPRAVR-AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 213 ~~~~~~~-v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~-~~~~~liDTPGi~~ 274 (323)
.....++ |+++|+||||||||+|+|.+... .+++.+++|++. ..+.+ +..+.++||||++.
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 0112344 99999999999999999998764 778899999885 34555 45688999999865
No 14
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.5e-12 Score=123.68 Aligned_cols=58 Identities=38% Similarity=0.591 Sum_probs=49.0
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~ 275 (323)
..+|++||+||||||||+|+|.+.+ ..+++.||||++... +.. +..+.|+||||++..
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 4689999999999999999999876 578999999999643 333 567999999999854
No 15
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.24 E-value=2.4e-11 Score=119.14 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=95.9
Q ss_pred CCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC------
Q 020622 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST------ 136 (323)
Q Consensus 65 ~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~------ 136 (323)
+.++++...|....|++.+.+++..+.+|....+. +.++||| .++.+++...+..+|++|+|+|++.+...
T Consensus 62 ~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~ 140 (439)
T 3j2k_7 62 ETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKG 140 (439)
T ss_pred cchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCC
Confidence 45567778899999999999999999999877665 7789999 78899999999999999999999987531
Q ss_pred -CcH---HHHHHhCCCC-eEEEEeccCCccH----HhH----HHHHHHHHhhC------ceEEEecCcCCCcchhhhH
Q 020622 137 -THP---LMDQWLGNRK-RILVLNREDMISM----ADR----NAWATYFAKQG------TKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 137 -~~~---~i~~~l~~k~-~iiVlNK~DLl~~----~~~----~~~~~~~~~~g------~~vi~iSa~~g~gi~~L~~ 195 (323)
... .+...+ +.| +++|+||+|+.+. ... ++..+++.+.| ..++++||++|.|+.++.+
T Consensus 141 ~qt~e~l~~~~~~-~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 141 GQTREHAMLAKTA-GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHc-CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 111 222222 455 9999999999642 111 22233344444 3589999999999998544
No 16
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.17 E-value=5.9e-11 Score=117.65 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=79.7
Q ss_pred CCCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----C
Q 020622 64 GGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----T 137 (323)
Q Consensus 64 ~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~----~ 137 (323)
.+.++++.+.|....|++.+.+++..+..|...... +-++||| .++.+++...+..+|++|+|+|+..+... .
T Consensus 77 ~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~ 155 (483)
T 3p26_A 77 KSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDL 155 (483)
T ss_dssp ------------------CCSSCCCCEEEEECSSCEEEEECCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCC
T ss_pred CCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccch
Confidence 356777888999999999999999999999887665 7789999 67889999999999999999999886322 1
Q ss_pred cHH------HHHHhCCCCeEEEEeccCCccH--HhHH----HHHHHHHhhC-----ceEEEecCcCCCcchh
Q 020622 138 HPL------MDQWLGNRKRILVLNREDMISM--ADRN----AWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (323)
Q Consensus 138 ~~~------i~~~l~~k~~iiVlNK~DLl~~--~~~~----~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (323)
..+ +...++.+++++|+||+|+.+. ...+ +..+++...+ ..++++||++|.|+.+
T Consensus 156 ~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 156 DGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 122 2222335679999999999872 2222 2223333333 4689999999999985
No 17
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.17 E-value=4e-11 Score=117.24 Aligned_cols=127 Identities=14% Similarity=0.192 Sum_probs=88.9
Q ss_pred CCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--
Q 020622 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-- 140 (323)
Q Consensus 65 ~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~-- 140 (323)
..++.+.+.|+...|++.+++++..+.+|...... +-++||| .++.+.+...+..+|++|+|+|++.+......+
T Consensus 71 ~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l 149 (434)
T 1zun_B 71 DDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS 149 (434)
T ss_dssp CC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEEECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH
T ss_pred cchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 34455666889999999999999999998877555 6788999 567788888999999999999999876432222
Q ss_pred -HHHHhCCCCeEEEEeccCCccH--Hh----HHHHHHHHHhhC-----ceEEEecCcCCCcchh
Q 020622 141 -MDQWLGNRKRILVLNREDMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (323)
Q Consensus 141 -i~~~l~~k~~iiVlNK~DLl~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (323)
+...++.+++++|+||+|+.+. +. ..++.+++++.+ ..++++||++|.|+.+
T Consensus 150 ~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 150 YIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 2222334568999999999862 22 223334455555 5789999999999987
No 18
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.09 E-value=2.8e-10 Score=112.87 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=82.8
Q ss_pred CcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 020622 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~ 147 (323)
..|....|++.+++++..|..+...-.. +-++||| .++.+++...+..+|++|+|+|+.++......+...++ .+
T Consensus 47 ~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ 125 (482)
T 1wb1_A 47 AHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN 125 (482)
T ss_dssp -----------------CCCEEEETTEEEEECCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTT
T ss_pred ccccccccccCccEEecceEEEEECCEEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcC
Confidence 4555667888899999988877765444 6789999 67889999999999999999999886543222222222 26
Q ss_pred CCeEEEEeccCCccHHhHHH----HHHHHHhh----CceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 148 RKRILVLNREDMISMADRNA----WATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 148 k~~iiVlNK~DLl~~~~~~~----~~~~~~~~----g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.|.++|+||+|+.+.+..+. ..+++.+. +..++++||++|.|+++|++.|.+..+
T Consensus 126 ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 126 IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 78899999999997543322 23334433 357899999999999999988877543
No 19
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.03 E-value=1.7e-10 Score=104.42 Aligned_cols=60 Identities=27% Similarity=0.285 Sum_probs=42.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCC-CceeeEEEEE--e-CCcEEEEecCCccCC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p-gtT~~~~~~~--~-~~~~~liDTPGi~~~ 275 (323)
..++|+++|.||||||||+|+|++.....++..+ |+|+...... . +..+.|+||||+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4689999999999999999999998766555433 5787754322 2 557899999999643
No 20
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.02 E-value=3.6e-10 Score=111.61 Aligned_cols=127 Identities=16% Similarity=0.075 Sum_probs=62.3
Q ss_pred CCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC--------C
Q 020622 67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--------T 136 (323)
Q Consensus 67 ~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~--------~ 136 (323)
.+++...|....|++.+++++..+.+|....+. +-++||| .++.+++...+..+|++|+|+|++++.. .
T Consensus 90 ~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDtPGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q 168 (467)
T 1r5b_A 90 WYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ 168 (467)
T ss_dssp -----------------------CCEEECSSEEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCC
T ss_pred hhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEECCCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc
Confidence 445667888889999999999999888876555 7789999 6788889999999999999999998631 1
Q ss_pred CcHHHHH-HhCCCC-eEEEEeccCCcc----HHh----HHHHHHHHHhh-C------ceEEEecCcCCCcchhhh
Q 020622 137 THPLMDQ-WLGNRK-RILVLNREDMIS----MAD----RNAWATYFAKQ-G------TKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 137 ~~~~i~~-~l~~k~-~iiVlNK~DLl~----~~~----~~~~~~~~~~~-g------~~vi~iSa~~g~gi~~L~ 194 (323)
....+.. ...+.| +++|+||+|+.+ .+. ..+..+++.+. + ..++++||++|.|+.++.
T Consensus 169 t~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 169 TREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1111111 122555 899999999964 121 12233344444 3 458999999999987643
No 21
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.02 E-value=4.2e-10 Score=96.28 Aligned_cols=61 Identities=33% Similarity=0.588 Sum_probs=43.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc-cccccCCCCceeeEEEEEeCCcEEEEecCCccCCC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~~~ 276 (323)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++...+..+.++.++||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence 35789999999999999999999875 45678889999998888888899999999986543
No 22
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.01 E-value=7.3e-10 Score=94.32 Aligned_cols=59 Identities=34% Similarity=0.508 Sum_probs=52.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEecCCccCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~~ 275 (323)
..+|+++|.+|||||||+|+|++.....+++.+|+|++......+..+.++||||+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYA 81 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccc
Confidence 46899999999999999999999876678889999999888878889999999998644
No 23
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.01 E-value=2.6e-10 Score=106.44 Aligned_cols=58 Identities=40% Similarity=0.629 Sum_probs=47.8
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccCC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~ 275 (323)
.+|+++|.||||||||+|+|++.+...+++.|+||++... +.. +.++.|+||||+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 4699999999999999999999888778899999988432 222 446889999999754
No 24
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.01 E-value=8.2e-10 Score=107.05 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=74.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-C---CCcHHHHHHhCCCCeEEEEeccCCccHHhH----HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-S---TTHPLMDQWLGNRKRILVLNREDMISMADR----NAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~-~---~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~----~~~~~~ 171 (323)
+-++||| .++.+++...+..+|++|+|+|+.++. . ..+..+...++.+++++|+||+|+.+.++. +++.++
T Consensus 87 iiDtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 87 FIDAPGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp EEECSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EEECCCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 6689999 678888888899999999999999764 1 112223333446789999999999876532 233333
Q ss_pred HHh---hCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+.. .+..++++||++|.|+++|++.|.+..
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 433 236799999999999999998887643
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.98 E-value=1.7e-10 Score=112.89 Aligned_cols=56 Identities=39% Similarity=0.611 Sum_probs=34.9
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (323)
+|++||.||||||||+|+|.++....+++.||+|++... +.. +..+.|+||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 589999999999999999999877678999999998532 233 55789999999864
No 26
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.98 E-value=3.1e-10 Score=99.48 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=50.7
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCc-cccccCCCCceeeEEEEEeC----CcEEEEecCCccCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 275 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~----~~~~liDTPGi~~~ 275 (323)
.++|+++|.+|||||||+|+|++.. ...++..+|+|++....... ..+.|+||||+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 5689999999999999999999886 45788999999998776664 67999999998644
No 27
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.98 E-value=1.7e-09 Score=104.71 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=76.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-C---cHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHh-
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-T---HPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK- 174 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~-~---~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~- 174 (323)
+.++||| .++.+++...+..+|++|+|+|++.+... . +..+...++.+|+++|+||+|+++.++..+..+.+.+
T Consensus 79 iiDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 79 FIDAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp EEECCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 6689999 77889999999999999999999987522 1 1223333446799999999999987654444333322
Q ss_pred ---h---CceEEEecCcCCCcchhhhHHHHHhh
Q 020622 175 ---Q---GTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 175 ---~---g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
. +..++++||++|.|+++|++.+.+..
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 1 35799999999999999998887643
No 28
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=3.6e-10 Score=96.38 Aligned_cols=119 Identities=15% Similarity=-0.012 Sum_probs=70.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHh-HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~-~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+..+.+..+ ..+..+. .+.|+++|+||+|+.+... ..+..++
T Consensus 68 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 146 (195)
T 1x3s_A 68 IWDTAGQ-ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF 146 (195)
T ss_dssp EEEECSS-GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred EEeCCCc-hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH
Confidence 3467887 3344455677899999999999976533221 1122222 1568899999999954321 2233344
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSS 232 (323)
..+.+..++.+||++|.|++++.+.+.+....... ..--+.+|+||||
T Consensus 147 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~-------------~~~~~~~n~gkSs 194 (195)
T 1x3s_A 147 ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG-------------LWESENQNSGPSS 194 (195)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGG-------------GTCC---------
T ss_pred HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhh-------------hhcccccCCCCCC
Confidence 55567889999999999999988877654432111 1122456999997
No 29
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.97 E-value=1.9e-10 Score=113.97 Aligned_cols=59 Identities=31% Similarity=0.419 Sum_probs=29.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe-CCcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~liDTPGi~~ 274 (323)
..++|+++|.||||||||+|+|++.....+++.||||++.. .+.+ +..+.|+||||+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 36789999999999999999999987778899999999964 3333 45689999999964
No 30
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.97 E-value=2.5e-10 Score=112.54 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=91.6
Q ss_pred CCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------
Q 020622 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS------- 135 (323)
Q Consensus 65 ~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~------- 135 (323)
+.++++.+.|....|++.+++++..+..|...... +-++||| .++.+++...+..+|++|+|+|+.++..
T Consensus 52 ~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDtPGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~ 130 (458)
T 1f60_A 52 GSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKD 130 (458)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTT
T ss_pred cchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEECCCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcc
Confidence 34455666788899999999999999999877655 6789999 6788888899999999999999986531
Q ss_pred ---CCcHHHHHHhCCCCeEEEEeccCCcc--HHhH----HHHHHHHHhhC-----ceEEEecCcCCCcchhh
Q 020622 136 ---TTHPLMDQWLGNRKRILVLNREDMIS--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (323)
Q Consensus 136 ---~~~~~i~~~l~~k~~iiVlNK~DLl~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (323)
..+..+...++.+++++|+||+|+.+ .+.. .+..+++...+ ..++++||++|.|+.++
T Consensus 131 ~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 131 GQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp SHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred hhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11111222222234899999999984 2222 22333344444 46999999999998654
No 31
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.97 E-value=7e-10 Score=99.13 Aligned_cols=64 Identities=23% Similarity=0.389 Sum_probs=42.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCC--CceeeEEEE--Ee-CCcEEEEecCCccCCCCCCH
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWV--RF-GKDLEFLDSPGIIPMRISDQ 280 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~--~~-~~~~~liDTPGi~~~~~~d~ 280 (323)
..++|+++|.+|||||||+|+|++... ..+..+ ++|++.... .. +..+.|+||||+.....++.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 96 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA 96 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH
Confidence 468999999999999999999998766 344444 677775432 23 45799999999986554443
No 32
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.96 E-value=6e-10 Score=104.07 Aligned_cols=60 Identities=38% Similarity=0.616 Sum_probs=49.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe--CCcEEEEecCCccCCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPMR 276 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~--~~~~~liDTPGi~~~~ 276 (323)
+-.|+++|.||||||||+|+|++.+...+++.|+||++... +.. +..+.|+||||+..+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 45799999999999999999999988788999999998543 222 3468899999997543
No 33
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.96 E-value=1.2e-09 Score=110.85 Aligned_cols=162 Identities=15% Similarity=0.022 Sum_probs=95.5
Q ss_pred CCcchhhHhhhcccccCcceeee--ec-c----ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 020622 71 NGSIEAYEEECDWADLDADLYYW--TK-S----LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ 143 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~--~~-~----l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~ 143 (323)
.+.|....|++.++++......+ .. . .-.+-++||| .++..++...+..+|.+|+|+|+..+..........
T Consensus 39 ~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~ 117 (599)
T 3cb4_D 39 QVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117 (599)
T ss_dssp ------------------CEEEEEEECTTSCEEEEEEEECCCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHH
T ss_pred cccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence 44555666888888877654433 21 1 1127789999 667888889999999999999998876543332221
Q ss_pred -H-hCCCCeEEEEeccCCccHHhHHHHHHHHH-hhCc---eEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccc
Q 020622 144 -W-LGNRKRILVLNREDMISMADRNAWATYFA-KQGT---KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRA 217 (323)
Q Consensus 144 -~-l~~k~~iiVlNK~DLl~~~~~~~~~~~~~-~~g~---~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~ 217 (323)
. ..+.|+++|+||+|+.+... .+..+.+. .++. +++++||++|.|+++|++.+.+..+... +....|
T Consensus 118 ~~~~~~ipiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~------~~~~~p 190 (599)
T 3cb4_D 118 TAMEMDLEVVPVLNKIDLPAADP-ERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE------GDPEGP 190 (599)
T ss_dssp HHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC------CCTTSC
T ss_pred HHHHCCCCEEEeeeccCcccccH-HHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc------ccccCC
Confidence 1 23789999999999976431 11122222 2343 4899999999999999888766543211 122335
Q ss_pred eEeeeecC---CCCChhhHHHhhhcC
Q 020622 218 VRAGIVGY---PNVGKSSLINRLLKR 240 (323)
Q Consensus 218 ~~v~ivG~---pNvGKSSLiN~L~~~ 240 (323)
++..+... +++|+.++++-+.|.
T Consensus 191 ~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 191 LQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp CEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred ceeeeeeccccccccEEEEEEEEeCE
Confidence 55555555 899999998887653
No 34
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.96 E-value=6.2e-10 Score=94.39 Aligned_cols=58 Identities=31% Similarity=0.490 Sum_probs=47.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC-CcEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-KDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~~~~liDTPGi~~ 274 (323)
..+|+++|.+|||||||+|+|.+.....+++.||||++. ..+.++ ..+.++||||+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 468999999999999999999987765678889999874 334443 4688999999964
No 35
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.95 E-value=1.5e-10 Score=114.89 Aligned_cols=57 Identities=39% Similarity=0.566 Sum_probs=49.0
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe-CCcEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~liDTPGi~ 273 (323)
.++|+++|.||||||||+|+|.+.....+++.||||++.. .+.+ +..+.|+||||+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 5789999999999999999999987778899999999853 3344 4568999999997
No 36
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.95 E-value=6.8e-10 Score=101.97 Aligned_cols=58 Identities=29% Similarity=0.470 Sum_probs=48.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~ 275 (323)
.++|+++|.+|||||||+|+|++.. ..+++.||+|.+... +.. +..+.++||||+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~ 63 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence 4689999999999999999999876 588999999988643 332 567899999999754
No 37
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.95 E-value=1.1e-09 Score=99.94 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=49.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccCC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~~ 275 (323)
..++|+++|.+|+|||||+|+|++.....+++.+++|.+...+.+ +..+.|+||||+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 368999999999999999999999887778888999887544333 346899999999754
No 38
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.94 E-value=4.3e-09 Score=92.11 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=74.0
Q ss_pred cccccch---------HHHHHHHHHHHHhh---cCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhH
Q 020622 100 VQWYPGH---------IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR 165 (323)
Q Consensus 100 i~~~PGh---------~~k~~~~l~~~i~~---aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~ 165 (323)
+-++||+ ..++...+...+.. +|++++|+|+..+.+..+..+..++. ++|+++|+||+|+.+..+.
T Consensus 83 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~ 162 (223)
T 4dhe_A 83 LVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQES 162 (223)
T ss_dssp EEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHH
T ss_pred EEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhH
Confidence 5567886 34444444455544 88899999999877766666666664 6899999999999886653
Q ss_pred HHH----HHHHHh-------hCceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 166 NAW----ATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 166 ~~~----~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
... .+.+.. .+..++++||++|.|+++|.+.+.+...
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 163 INALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 322 233333 2367899999999999999888776543
No 39
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.93 E-value=6.8e-10 Score=107.58 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=67.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CC---CcHHHHHHhCCCCeEEEEeccCCccHHh----HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-ST---THPLMDQWLGNRKRILVLNREDMISMAD----RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~-~~---~~~~i~~~l~~k~~iiVlNK~DLl~~~~----~~~~~~~ 171 (323)
+-++||| .++.+++...+..+|++|+|+|+.++. .. .+..+...++.+|+++|+||+|+.+.++ .++..++
T Consensus 85 iiDtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~ 163 (408)
T 1s0u_A 85 FVDSPGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF 163 (408)
T ss_dssp EEECSSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred EEECCCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 6688999 678888888889999999999999764 11 1222333344578999999999987542 2333344
Q ss_pred HHh---hCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+.+ .+..++++||++|.|+++|++.|.+..
T Consensus 164 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 433 246799999999999999998887643
No 40
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.93 E-value=1e-09 Score=107.39 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=78.5
Q ss_pred CCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCCcHH
Q 020622 70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHPL 140 (323)
Q Consensus 70 ~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~-------~~~~~~~ 140 (323)
+.+.|....|++.+.+++..+..|...... +-++||| .++.+++...+..+|++|+|+|+.++ ......+
T Consensus 56 ~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~ 134 (435)
T 1jny_A 56 AFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE 134 (435)
T ss_dssp HHHHHHHHHC-----------CEEECSSCEEEECCCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH
T ss_pred hhhhccChHHHhcCceeEeeEEEEecCCeEEEEEECCCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHH
Confidence 345678888999999999998888876555 6789999 66888888899999999999999875 2221122
Q ss_pred H---HHHhCCCCeEEEEeccCCccH----Hh----HHHHHHHHHhhC-----ceEEEecCcCCCcchhh
Q 020622 141 M---DQWLGNRKRILVLNREDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (323)
Q Consensus 141 i---~~~l~~k~~iiVlNK~DLl~~----~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (323)
. ...++.+++++|+||+|+.+. +. .++..+++...+ ..++++||++|.|+.++
T Consensus 135 ~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 135 HIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 2 222234579999999999872 11 223334444444 46899999999998744
No 41
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.92 E-value=1.6e-09 Score=98.56 Aligned_cols=60 Identities=23% Similarity=0.403 Sum_probs=48.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE--e-CCcEEEEecCCccCC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~ 275 (323)
..++|+++|.+|||||||+|+|++.....+++.+++|....... . +..+.|+||||+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 36899999999999999999999988777888899888754432 2 457899999999654
No 42
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.92 E-value=5.4e-10 Score=113.89 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=94.2
Q ss_pred CCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------C
Q 020622 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------S 135 (323)
Q Consensus 65 ~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~-------~ 135 (323)
+.++++.+.|....|++.+++++..+..|...... +.++||| .++.+.+...+..+|++|+|+|+..+. .
T Consensus 212 ~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~ 290 (611)
T 3izq_1 212 SSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLD 290 (611)
T ss_dssp SCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTT
T ss_pred cccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEECCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhh
Confidence 45667778889999999999999999999987665 7789999 668888888899999999999998641 1
Q ss_pred C---CcHHHHHHhCCCCeEEEEeccCCccH--Hh----HHHHHHHHHhhC-----ceEEEecCcCCCcchhh
Q 020622 136 T---THPLMDQWLGNRKRILVLNREDMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (323)
Q Consensus 136 ~---~~~~i~~~l~~k~~iiVlNK~DLl~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (323)
. .+..+...++.+++++|+||+|+.+. .. .....+++.+.| ..++++||++|.|+.++
T Consensus 291 ~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 291 GQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp SHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 11122222334569999999999872 11 122233344444 47899999999999865
No 43
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.90 E-value=4.5e-10 Score=109.79 Aligned_cols=56 Identities=38% Similarity=0.564 Sum_probs=34.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
.+|++||.||||||||+|+|.+.....+++.||+|++...... +..+.|+||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~ 62 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID 62 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCC
Confidence 4699999999999999999999877778999999999765554 4579999999996
No 44
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.90 E-value=2.8e-09 Score=90.42 Aligned_cols=56 Identities=36% Similarity=0.526 Sum_probs=47.7
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEecCCccCC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~~ 275 (323)
++|+++|.+|||||||+|+|.+.. +.++..||+|.+...+... .+.++||||+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCcccc
Confidence 479999999999999999999765 5677889999887777665 8999999998643
No 45
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.90 E-value=2.1e-09 Score=97.90 Aligned_cols=57 Identities=32% Similarity=0.446 Sum_probs=47.0
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccCCC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMR 276 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~ 276 (323)
+|+++|.||||||||+|+|.+.. ..+++.||+|.+... +.. +..+.|+||||+....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 69999999999999999999875 578999999987543 333 4568899999997543
No 46
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.89 E-value=2.8e-09 Score=103.06 Aligned_cols=116 Identities=17% Similarity=0.065 Sum_probs=83.6
Q ss_pred cchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 020622 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR 148 (323)
Q Consensus 73 ~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k 148 (323)
.|....|++.+.+++..+..|...... +-++||| .++.+.+...+..+|++|+|+|+.++......+....+ .+.
T Consensus 50 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~i 128 (405)
T 2c78_A 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128 (405)
T ss_dssp HSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh-HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 455667888999999988888765444 7789999 56788888999999999999999887643333332332 256
Q ss_pred C-eEEEEeccCCcc-HHhHH----HHHHHHHhhC-----ceEEEecCcCCCc
Q 020622 149 K-RILVLNREDMIS-MADRN----AWATYFAKQG-----TKVIFSNGQLGMG 189 (323)
Q Consensus 149 ~-~iiVlNK~DLl~-~~~~~----~~~~~~~~~g-----~~vi~iSa~~g~g 189 (323)
| +++|+||+|+.+ ....+ +..+++...+ ..++++||++|.|
T Consensus 129 p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp CCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred CEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 6 789999999985 22111 2333444444 4689999999987
No 47
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.87 E-value=1.8e-09 Score=97.60 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=47.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCC-ceeeEEE--EEe-CCcEEEEecCCccCCC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKW--VRF-GKDLEFLDSPGIIPMR 276 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pg-tT~~~~~--~~~-~~~~~liDTPGi~~~~ 276 (323)
..++|+|+|.+|||||||+|+|++.....++..|+ +|++... +.. +..+.|+||||+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 35789999999999999999999887666666666 7776432 222 4579999999997543
No 48
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.86 E-value=1.4e-09 Score=101.36 Aligned_cols=56 Identities=32% Similarity=0.456 Sum_probs=46.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCcc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~ 273 (323)
.+|+++|.||||||||+|+|++.+...+++.|+||++... +.. +..+.++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 4699999999999999999999887778889999987432 222 3468899999986
No 49
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.86 E-value=4.7e-09 Score=96.53 Aligned_cols=58 Identities=38% Similarity=0.493 Sum_probs=48.0
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe--CCcEEEEecCCccCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~~~~~liDTPGi~~~ 275 (323)
.++|+++|.||||||||+|+|.+.. ..+++.||+|.+.....+ +..+.++||||....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCcc
Confidence 4689999999999999999999865 468899999988654444 457999999999754
No 50
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.86 E-value=4.5e-09 Score=95.73 Aligned_cols=59 Identities=36% Similarity=0.530 Sum_probs=48.1
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE--e-CCcEEEEecCCccCCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMR 276 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~~ 276 (323)
.++|+++|.||||||||+|+|.+.. ..+++.||+|.+..... . +..+.|+||||+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 5789999999999999999999865 35888999998865433 3 4478999999997543
No 51
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.85 E-value=2.5e-09 Score=103.28 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=87.5
Q ss_pred chhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 020622 74 IEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK 149 (323)
Q Consensus 74 ~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~ 149 (323)
|....|++.+.+++..+..|...... +-++||| .++.+++...+..+|++|+|+|+..+......+....+ .+.|
T Consensus 42 d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp 120 (397)
T 1d2e_A 42 DNAPEERARGITINAAHVEYSTAARHYAHTDCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120 (397)
T ss_dssp HSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred hcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 44455778888999888888765444 7789999 66788888889999999999999987543322222222 2566
Q ss_pred -eEEEEeccCCcc-HHhH----HHHHHHHHhhC-----ceEEEecCcCCCc----------chhhhHHHHHh
Q 020622 150 -RILVLNREDMIS-MADR----NAWATYFAKQG-----TKVIFSNGQLGMG----------TMKLSRLAKAL 200 (323)
Q Consensus 150 -~iiVlNK~DLl~-~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~g----------i~~L~~~l~~l 200 (323)
+++|+||+|+.+ .... .+..+++.+.+ ..++++||++|.| +.+|++.+.+.
T Consensus 121 ~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp CEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred eEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 689999999985 2211 22333444444 4789999998764 66777666553
No 52
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.83 E-value=3.3e-09 Score=97.11 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=38.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccC-------CCCceeeEEEEEe--CC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRF--GK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~-------~pgtT~~~~~~~~--~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|+|||||+|+|++.+...... .++++.+.....+ +. .+.|+||||+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 35789999999999999999999877654432 3445545443333 22 68899999995
No 53
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.83 E-value=9.6e-10 Score=108.49 Aligned_cols=59 Identities=36% Similarity=0.510 Sum_probs=44.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe-CCcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~liDTPGi~~ 274 (323)
..++|+++|.||||||||+|+|++.....+++.||||++.. .+.+ +..+.|+||||+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 36789999999999999999999887777899999999852 2333 45788999999964
No 54
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.83 E-value=2.5e-09 Score=108.34 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=41.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCC----ceeeE-EEE-----EeCCcEEEEecCCccCC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG----VTRVL-KWV-----RFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pg----tT~~~-~~~-----~~~~~~~liDTPGi~~~ 275 (323)
...+|+|+|.||||||||||+|++.... + +.+| +|+.+ .|. ..+..+.|+||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 3567999999999999999999997642 1 3444 44443 221 12457999999999854
No 55
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.82 E-value=2.4e-09 Score=92.79 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=39.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc-cccccCCCCceeeEEEEEeCCcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~-~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (323)
...+|+++|.+|+|||||+|+|.+.. ...+++.+|+|+....+..+.++.++||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 35679999999999999999999876 456678899998766666656889999999853
No 56
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.82 E-value=6.6e-09 Score=94.83 Aligned_cols=59 Identities=34% Similarity=0.499 Sum_probs=48.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEE--Ee-CCcEEEEecCCccCCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMR 276 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~~~~liDTPGi~~~~ 276 (323)
.++|+++|.+|||||||+|+|.+... .++..||+|.+.... .. +..+.++||||+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccc
Confidence 36799999999999999999998754 788999999886432 32 4568899999997544
No 57
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.82 E-value=2.5e-10 Score=115.95 Aligned_cols=126 Identities=13% Similarity=0.059 Sum_probs=55.1
Q ss_pred CCCCCCCCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------C
Q 020622 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------S 135 (323)
Q Consensus 65 ~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~-------~ 135 (323)
+.++++.+.|....|++.+++++..+..|...-+. +.++||| .++.+++...+..+|++|+|+|+..+. .
T Consensus 222 ~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh-~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~ 300 (592)
T 3mca_A 222 GSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGH-RDFISGMIAGASSADFAVLVVDSSQNNFERGFLEN 300 (592)
T ss_dssp -------------------------------------CCEEESS-SEEEEECCC-------CCSEEEEEECCSSTTSCSC
T ss_pred cchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEECCCCccccccccc
Confidence 45667888999999999999999999888876554 7789999 456666777789999999999998753 2
Q ss_pred CCcHHHHHHh--CCC-CeEEEEeccCCcc--HHhHH----HHHHHH-HhhCc-----eEEEecCcCCCcch
Q 020622 136 TTHPLMDQWL--GNR-KRILVLNREDMIS--MADRN----AWATYF-AKQGT-----KVIFSNGQLGMGTM 191 (323)
Q Consensus 136 ~~~~~i~~~l--~~k-~~iiVlNK~DLl~--~~~~~----~~~~~~-~~~g~-----~vi~iSa~~g~gi~ 191 (323)
....+...++ .+. ++|+|+||+|+.+ ..... +..+++ ...|+ .++++||++|.|+.
T Consensus 301 ~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 301 GQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred hHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2222222222 244 5899999999986 32222 223333 33343 68999999999997
No 58
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.81 E-value=5.6e-09 Score=87.21 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=40.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCC---cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+.......+.+|+|.....+.++. .+.++||||...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 5789999999999999999999877666667788877665555543 477999999853
No 59
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.81 E-value=2.4e-08 Score=85.19 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=71.1
Q ss_pred cccccch---------HHHHHHHHHHHHhhc---CeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhH
Q 020622 100 VQWYPGH---------IAKTEKELKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR 165 (323)
Q Consensus 100 i~~~PGh---------~~k~~~~l~~~i~~a---DlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~ 165 (323)
+-++||+ ..++.......+..+ |++++|+|+..+.+..+..+..++. +.|+++|+||+|+.+..+.
T Consensus 73 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~ 152 (195)
T 1svi_A 73 FVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKW 152 (195)
T ss_dssp EEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH
T ss_pred EEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHH
Confidence 4467883 244444455555555 9999999998877666655556654 6899999999999887654
Q ss_pred HHHHHHHHh-----hCceEEEecCcCCCcchhhhHHHHHh
Q 020622 166 NAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 166 ~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+.+.+ .+..++++||++|.|+++|.+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 153 DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp HHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence 433333322 23679999999999999988876543
No 60
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.81 E-value=7.3e-09 Score=86.78 Aligned_cols=58 Identities=29% Similarity=0.535 Sum_probs=40.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEe-CCcEEEEecCCccCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIPM 275 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~-~~~~~liDTPGi~~~ 275 (323)
..+|+++|.+|||||||+|+|.+.. ..++..||+|.+. ..+.. +..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 3679999999999999999999754 3567788888763 23333 456889999998753
No 61
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.80 E-value=1.5e-09 Score=105.11 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=21.1
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~ 255 (323)
++|++||.||||||||+|+|++.+ ..+++.|+||++.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~ 37 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEA 37 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------C
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCC
Confidence 369999999999999999999887 6789999999873
No 62
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.79 E-value=1.6e-08 Score=94.32 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=77.6
Q ss_pred cccccchH---------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH-HHHhC--CCCeEEEEeccCCc-cHHhHH
Q 020622 100 VQWYPGHI---------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI-SMADRN 166 (323)
Q Consensus 100 i~~~PGh~---------~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i-~~~l~--~k~~iiVlNK~DLl-~~~~~~ 166 (323)
+-++||+. ..+.+.....+..+|++++|+|+..+.+..+..+ ...+. +.|+++|+||+|+. +.....
T Consensus 63 lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~ 142 (308)
T 3iev_A 63 FLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVL 142 (308)
T ss_dssp EEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGH
T ss_pred EEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHH
Confidence 34567763 2344556677899999999999998777666655 55554 68999999999998 565555
Q ss_pred HHHHHHHh-hC--ceEEEecCcCCCcchhhhHHHHHhhhh
Q 020622 167 AWATYFAK-QG--TKVIFSNGQLGMGTMKLSRLAKALASD 203 (323)
Q Consensus 167 ~~~~~~~~-~g--~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (323)
.+.+.+.+ .+ ..++++||++|.|+++|.+.+.+....
T Consensus 143 ~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 143 PLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp HHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred HHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 55555544 33 679999999999999998888776543
No 63
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=2.6e-09 Score=102.14 Aligned_cols=56 Identities=41% Similarity=0.569 Sum_probs=40.8
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeC------------------CcEEEEecCCccC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~------------------~~~~liDTPGi~~ 274 (323)
++|++||.||||||||+|+|.+.. +.+++.|+||.+.. .+... ..+.++||||+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 579999999999999999999876 67899999998742 23322 3689999999974
No 64
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.78 E-value=8.9e-09 Score=94.45 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccc-----cccCCCC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~-----~v~~~pg 250 (323)
..++|+++|.||||||||+|+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 3568999999999999999999987754 3445565
No 65
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.78 E-value=3.8e-09 Score=87.04 Aligned_cols=57 Identities=47% Similarity=0.576 Sum_probs=37.5
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE--e-CCcEEEEecCCccC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~-~~~~~liDTPGi~~ 274 (323)
.+|+++|.+|||||||+|+|.+.....++..+++|.+..... . +..+.++||||...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 369999999999999999999877555778889888754433 2 45788999999974
No 66
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.78 E-value=1.6e-08 Score=85.69 Aligned_cols=59 Identities=31% Similarity=0.566 Sum_probs=46.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCccCC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~ 275 (323)
..++|+++|.+|||||||+|+|.+.. ..++..||+|.+... +.. +..+.++||||....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 35789999999999999999999764 466778999887543 333 456889999998754
No 67
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.77 E-value=2.2e-08 Score=107.49 Aligned_cols=127 Identities=17% Similarity=0.078 Sum_probs=81.5
Q ss_pred cchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CC
Q 020622 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NR 148 (323)
Q Consensus 73 ~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k 148 (323)
.|....|++.+++++..++.|...... +-++||| .++.+++...+..+|++|+|+|+.++......+....+. +.
T Consensus 334 lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgI 412 (1289)
T 3avx_A 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 412 (1289)
T ss_dssp --------------CCSCEEEECSSCEEEEEECCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTC
T ss_pred cccccccccCceeEEEEEEEEcCCCEEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCC
Confidence 455677888999999988888876554 7789999 668888888999999999999999876554433333322 56
Q ss_pred C-eEEEEeccCCccHHh-H----HHHHHHHHhhC-----ceEEEecCcCC--------CcchhhhHHHHHh
Q 020622 149 K-RILVLNREDMISMAD-R----NAWATYFAKQG-----TKVIFSNGQLG--------MGTMKLSRLAKAL 200 (323)
Q Consensus 149 ~-~iiVlNK~DLl~~~~-~----~~~~~~~~~~g-----~~vi~iSa~~g--------~gi~~L~~~l~~l 200 (323)
| +++|+||+|+.+..+ . .+..+++.+.+ ..++++||++| .|+.+|.+.+.+.
T Consensus 413 P~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 413 PYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp SCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 6 789999999985322 1 22333444444 46899999999 4677777776653
No 68
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.75 E-value=2.6e-08 Score=95.46 Aligned_cols=119 Identities=18% Similarity=0.041 Sum_probs=84.7
Q ss_pred hcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCe-EEEEe
Q 020622 81 CDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKR-ILVLN 155 (323)
Q Consensus 81 e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~-iiVlN 155 (323)
+.+++++..+..|...... +-++||| .++.+++...+..+|++|+|+| ..+......+...++ .+.|. ++++|
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvN 120 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALT 120 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEE
Confidence 6678889888888766555 6689999 5688888999999999999999 655432222222222 25666 99999
Q ss_pred -ccCCccHHhHHH----HHHHHHhhC---ceEEE--ecCcC---CCcchhhhHHHHHhhh
Q 020622 156 -REDMISMADRNA----WATYFAKQG---TKVIF--SNGQL---GMGTMKLSRLAKALAS 202 (323)
Q Consensus 156 -K~DLl~~~~~~~----~~~~~~~~g---~~vi~--iSa~~---g~gi~~L~~~l~~l~~ 202 (323)
|+|+ +.+...+ ..+++.+.+ .++++ +||++ +.|+++|++.+.++.+
T Consensus 121 NK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 121 RSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred eccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 9999 6543322 222233222 57899 99999 9999999888776654
No 69
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.75 E-value=3.2e-08 Score=84.02 Aligned_cols=84 Identities=26% Similarity=0.381 Sum_probs=61.5
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHH----HHhhC-ceEEEecCcCCCcc
Q 020622 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY----FAKQG-TKVIFSNGQLGMGT 190 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~----~~~~g-~~vi~iSa~~g~gi 190 (323)
...+|++++|+|+..+....+..+..++. +.|+++|+||+|+.+..+.....+. +...+ ..++.+||++|.|+
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTH
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 34459999999998776665556666654 7899999999999876554333332 33323 57999999999999
Q ss_pred hhhhHHHHHhh
Q 020622 191 MKLSRLAKALA 201 (323)
Q Consensus 191 ~~L~~~l~~l~ 201 (323)
+++.+.+.+..
T Consensus 182 ~~l~~~l~~~l 192 (195)
T 3pqc_A 182 SELLDLISTLL 192 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988776543
No 70
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.75 E-value=7.3e-09 Score=91.60 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=42.3
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|++... .+++.+++|++...... +..+.|+||||+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 467899999999999999999998764 46778899988654332 34688999999964
No 71
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=9.1e-09 Score=99.43 Aligned_cols=60 Identities=30% Similarity=0.367 Sum_probs=49.0
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC------------------CcEEEEecCCccC
Q 020622 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG------------------KDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~------------------~~~~liDTPGi~~ 274 (323)
....+++|+|.||||||||+|+|.+...+.+++.|+||++. ..+.+. ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 34578999999999999999999998766899999999874 233333 2578999999975
No 72
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.74 E-value=1e-08 Score=97.43 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=27.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc-----cccCCCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~-----~v~~~pg 250 (323)
..+|+++|.||||||||+|+|++.... .++..|+
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 458999999999999999999987654 3444565
No 73
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.72 E-value=1.9e-08 Score=83.40 Aligned_cols=58 Identities=24% Similarity=0.425 Sum_probs=44.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcc-ccccCCCCceeeEEEEEeC---CcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... ....+.+|++.....+... ..+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 357899999999999999999998653 2345566777666555554 357899999984
No 74
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.72 E-value=8e-09 Score=99.84 Aligned_cols=60 Identities=32% Similarity=0.393 Sum_probs=33.9
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe------------------CCcEEEEecCCccC
Q 020622 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF------------------GKDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~------------------~~~~~liDTPGi~~ 274 (323)
....+|++||.||||||||+|+|.+... .+++.|+||.+.. .+.+ ...+.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3457899999999999999999998765 8899999998742 2222 22489999999985
Q ss_pred C
Q 020622 275 M 275 (323)
Q Consensus 275 ~ 275 (323)
.
T Consensus 99 ~ 99 (396)
T 2ohf_A 99 G 99 (396)
T ss_dssp -
T ss_pred c
Confidence 3
No 75
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.71 E-value=2e-09 Score=90.92 Aligned_cols=114 Identities=15% Similarity=-0.027 Sum_probs=68.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC--CCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+. ++.......+..+|++++|+|+.++.+.... .+...+. +.|+++|+||+|+.+..+ ..+..+
T Consensus 58 l~Dt~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 136 (181)
T 3t5g_A 58 LVDTAGQD-EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA 136 (181)
T ss_dssp EEECCCCC-TTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred EEeCCCch-hhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHH
Confidence 33456652 2222223446789999999998764322111 1222222 679999999999964322 223334
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSS 232 (323)
+....+..++.+||++|.|++++.+.+.+.... .-|..++||||
T Consensus 137 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~------------------~~~~~~~gkss 180 (181)
T 3t5g_A 137 LAESWNAAFLESSAKENQTAVDVFRRIILEAEK------------------MDGACSQGKSS 180 (181)
T ss_dssp HHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT------------------C-----CCBSC
T ss_pred HHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH------------------hcCCcccCcCC
Confidence 455567889999999999999988776554322 22567889987
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.70 E-value=9e-09 Score=87.52 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=69.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHh-------CCCCeEEEEeccCCccHHhHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVLNREDMISMADRNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l-------~~k~~iiVlNK~DLl~~~~~~~~ 168 (323)
+-++||+ .++.......+..+|++|+|+|+..+....+. .+..++ .+.|+++|+||+|+.+....++.
T Consensus 78 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~ 156 (198)
T 3t1o_A 78 LYTVPGQ-VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMV 156 (198)
T ss_dssp EEECCSC-CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHH
T ss_pred EEeCCCh-HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHH
Confidence 4457886 33445555678999999999999744222221 233333 36799999999999765444445
Q ss_pred HHHHHhhCc-eEEEecCcCCCcchhhhHHHHHh
Q 020622 169 ATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 169 ~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.+++...+. .++.+||++|.|++++.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHH
Confidence 555666676 89999999999999988776553
No 77
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.69 E-value=2.2e-08 Score=84.70 Aligned_cols=101 Identities=12% Similarity=-0.009 Sum_probs=70.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH-HHHHh-----CCCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL-MDQWL-----GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~-i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|++|+|+|+..+.+..+ .. +..+. .+.|+++|+||+|+.+..+ .....+
T Consensus 74 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 74 LWDTAGL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp EEEECCS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 4467888 4456666677899999999999976543322 11 11111 3679999999999976422 223334
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+....+..++.+||++|.|++++.+.+.+..
T Consensus 153 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 153 LAEKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445677899999999999999888776544
No 78
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.69 E-value=1.7e-08 Score=83.47 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=67.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++. +.|+++|+||+|+.+.....++.+.+
T Consensus 48 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 126 (164)
T 1r8s_A 48 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 126 (164)
T ss_dssp EEECCCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEEcCCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHh
Confidence 4457887 345555566789999999999998763221 122333332 67899999999997653333333332
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
. ..+..++.+||++|.|++++.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 127 GLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp TGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 2 123568999999999999988876543
No 79
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.68 E-value=1.5e-08 Score=84.01 Aligned_cols=58 Identities=26% Similarity=0.155 Sum_probs=34.7
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCC--cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK--DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~--~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+.....+.+.+|+|........+. .+.++||||...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 3689999999999999999999877667778888888643322222 467999999753
No 80
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.68 E-value=3.6e-08 Score=81.22 Aligned_cols=99 Identities=9% Similarity=-0.086 Sum_probs=67.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|.+++|+|+.++.+... ..+..... +.|+++|+||+|+.+..+ ..+..+
T Consensus 56 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 134 (168)
T 1u8z_A 56 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 134 (168)
T ss_dssp EEECCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH
Confidence 4567887 4455666677899999999999876532211 11222222 689999999999976432 233444
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+....+..++.+||++|.|++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 135 RADQWNVNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp HHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 45556788999999999999998877654
No 81
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.68 E-value=1.8e-08 Score=82.88 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=70.2
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHH
Q 020622 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~ 171 (323)
+-++||+.. ...+.....+..+|++++|+|+..+.+..+..+..++. +.|+++|+||+|+.+..+ ....
T Consensus 53 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~ 129 (161)
T 2dyk_A 53 LVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL---YLGP 129 (161)
T ss_dssp EEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG---GCGG
T ss_pred EEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH---hHHH
Confidence 445677632 24455667789999999999998876655555666654 789999999999986532 1122
Q ss_pred HHhhCc-eEEEecCcCCCcchhhhHHHHH
Q 020622 172 FAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+.+.+. .++.+||++|.|++++.+.+.+
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 130 LYGLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp GGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred HHhCCCCCeEEEecccCCChHHHHHHHHH
Confidence 235565 7899999999999998877654
No 82
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.67 E-value=1.8e-08 Score=93.36 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~ 242 (323)
..+|+|+|.+|||||||+|+|++...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 45799999999999999999998765
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.67 E-value=7.8e-09 Score=88.41 Aligned_cols=101 Identities=18% Similarity=0.090 Sum_probs=68.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC------------CCCeEEEEeccCCccHHhH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG------------NRKRILVLNREDMISMADR 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~------------~k~~iiVlNK~DLl~~~~~ 165 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..++. +.|+++|+||+|+.+....
T Consensus 67 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 145 (199)
T 4bas_A 67 VFDMGGA-KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA 145 (199)
T ss_dssp EEEECCS-GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH
T ss_pred EEECCCC-HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH
Confidence 5567887 3444555566789999999999987643211 22333322 6799999999999876333
Q ss_pred HHHHHHH------HhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 166 NAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 166 ~~~~~~~------~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.++.+.+ ...+..++.+||++|.|++++.+.+.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 146 AELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 3332222 23456789999999999999988776544
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.66 E-value=4.6e-08 Score=83.49 Aligned_cols=100 Identities=7% Similarity=-0.051 Sum_probs=68.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+... ..+..++ .+.|+++|+||+|+.+..+..++.+.+
T Consensus 71 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 149 (188)
T 1zd9_A 71 LWDIGGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM 149 (188)
T ss_dssp EEEECCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHh
Confidence 5578998 4566666677899999999999976532211 2233332 367999999999998653333333333
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
. ..+..++.+||++|.|+++|.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 150 NLSAIQDREICCYSISCKEKDNIDITLQWLIQH 182 (188)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred ChhhhccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 2 123568999999999999988876654
No 85
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.65 E-value=5.8e-08 Score=84.56 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=70.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---------CCCCeEEEEeccCCccHHh--HHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---------GNRKRILVLNREDMISMAD--RNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l---------~~k~~iiVlNK~DLl~~~~--~~~~ 168 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+. ..+..++ .+.|+++|+||+|+.+..+ ....
T Consensus 88 l~Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~ 164 (217)
T 2f7s_A 88 LWDTAGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA 164 (217)
T ss_dssp EEEEESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH
T ss_pred EEECCCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHH
Confidence 5578998 56677777889999999999998764332 1222222 2568999999999976422 2233
Q ss_pred HHHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.++....+..++.+||++|.|++++.+.+.+..
T Consensus 165 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 165 RELADKYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 334445677899999999999999988766543
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.65 E-value=1.1e-08 Score=85.17 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=67.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++ .+.|+++|+||+|+.+.....++.+.+
T Consensus 55 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (171)
T 1upt_A 55 VWDLGGL-TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSL 133 (171)
T ss_dssp EEEECCC-GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCC-hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHh
Confidence 4457887 334444445678999999999998764322 22333333 367999999999998754333333333
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
. ..+..++.+||++|.|++++.+.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 134 GLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 2 2345789999999999999888765543
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.65 E-value=9.1e-09 Score=87.85 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=67.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-------CCCCeEEEEeccCCccHHhHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMISMADRNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-------~~k~~iiVlNK~DLl~~~~~~~~~~ 170 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+.....+..+
T Consensus 71 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 149 (190)
T 2h57_A 71 VFDMSGQ-GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQ 149 (190)
T ss_dssp EEEECCS-TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred EEECCCC-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHH
Confidence 4567886 3344444566789999999999976532211 2233332 3679999999999976533334434
Q ss_pred HHH-----hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 171 YFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.+. ..+..++.+||++|.|+++|.+.+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 150 LLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp HHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 332 2346789999999999999988776543
No 88
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.64 E-value=4.1e-08 Score=81.18 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=41.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc-cccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|++.... ...+..|++.....+.++. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999999976532 2234445555455555543 58899999964
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.63 E-value=2.3e-08 Score=85.07 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+.. ...+..++ .+.|+++|+||+|+.+....++..+.+
T Consensus 64 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 142 (187)
T 1zj6_A 64 MWDIGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 142 (187)
T ss_dssp EEECCC-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence 4567887 445555567789999999999998764322 12233333 367999999999997643333333333
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
. ..+..++.+||++|.|++++.+.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 143 KLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 2 2346789999999999999988776544
No 90
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.63 E-value=4e-08 Score=82.65 Aligned_cols=101 Identities=9% Similarity=-0.104 Sum_probs=70.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+. ++.......+..+|++++|+|+.++.+... ..+..... +.|+++|+||+|+.+..+ ..+..+
T Consensus 70 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 148 (187)
T 2a9k_A 70 ILDTAGQE-DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 148 (187)
T ss_dssp EEECCCTT-CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCCc-ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence 55678873 445555677899999999999876432111 12222222 689999999999976432 334444
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
++...+..++++||++|.|++++.+.+.+..
T Consensus 149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 149 RAEQWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp HHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 5556678899999999999999888765543
No 91
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.63 E-value=5.3e-08 Score=98.84 Aligned_cols=129 Identities=13% Similarity=0.029 Sum_probs=77.5
Q ss_pred CCcchhhHhhhcccccCcceee--eec-c----ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 020622 71 NGSIEAYEEECDWADLDADLYY--WTK-S----LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ 143 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~--~~~-~----l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~ 143 (323)
.+.|....|++.++++...... |.. . .-.+-++||| .++..++...+..+|.+|+|+|+..+..........
T Consensus 41 ~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh-~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~ 119 (600)
T 2ywe_A 41 QLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH-VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119 (600)
T ss_dssp ---------------CCCCSEEEEEECTTSCEEEEEEECCCCS-GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHH
T ss_pred cccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc-HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHH
Confidence 3455566688888887755433 321 1 1126789999 557778888899999999999999876543322221
Q ss_pred H--hCCCCeEEEEeccCCccHHhHHHHHHHHHh-hCc---eEEEecCcCCCcchhhhHHHHHhh
Q 020622 144 W--LGNRKRILVLNREDMISMADRNAWATYFAK-QGT---KVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 144 ~--l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~-~g~---~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
. ..+.|+++|+||+|+..... .+..+.+.+ ++. +++++||++|.|+++|++.+.+..
T Consensus 120 ~a~~~~ipiIvviNKiDl~~a~~-~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 120 KAVEQDLVIIPVINKIDLPSADV-DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp HHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHCCCCEEEEEeccCccccCH-HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 1 23789999999999976432 222233333 343 489999999999999988776554
No 92
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.62 E-value=6.1e-08 Score=79.73 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=37.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|.+..... ....++.+ ...+..+. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 4789999999999999999999765322 22223322 23333433 37899999964
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.62 E-value=2.2e-08 Score=84.91 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=69.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+...+. +.|+++|+||+|+.+....++..+.+
T Consensus 66 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (186)
T 1ksh_A 66 IWDVGGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEAL 144 (186)
T ss_dssp EEEECCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHh
Confidence 5567898 4455555566789999999999987643221 22333332 57999999999998654433433333
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
. ..+..++.+||++|.|++++.+.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 145 ELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2 2345789999999999999888766543
No 94
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.62 E-value=3.5e-08 Score=91.91 Aligned_cols=101 Identities=18% Similarity=0.079 Sum_probs=72.4
Q ss_pred cccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCeEEEEeccCCccHHh-HHH
Q 020622 100 VQWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMAD-RNA 167 (323)
Q Consensus 100 i~~~PGh~~-------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~iiVlNK~DLl~~~~-~~~ 167 (323)
+-++||+.. .+.+.....+..+|++++|+|+.++.+..+..+.+.+. +.|+++|+||+|+.+... ..+
T Consensus 59 l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 138 (301)
T 1wf3_A 59 FVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMK 138 (301)
T ss_dssp EEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHH
T ss_pred EecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHH
Confidence 445677632 24555667789999999999998877665555555443 689999999999986544 333
Q ss_pred HHHHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 168 WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 168 ~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
..+.+ .....++++||++|.|+++|.+.+.+..
T Consensus 139 ~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 139 AYHEL-LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp HHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred HHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 33333 1124689999999999999988876654
No 95
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.62 E-value=1.3e-07 Score=92.70 Aligned_cols=103 Identities=11% Similarity=0.101 Sum_probs=74.1
Q ss_pred cccccch---------HHHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHh--H
Q 020622 100 VQWYPGH---------IAKTE-KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--R 165 (323)
Q Consensus 100 i~~~PGh---------~~k~~-~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~--~ 165 (323)
+-++||+ ++++. ......++.+|++|+|+|+..+....+..+..++. ++|+++|+||+|+.+..+ .
T Consensus 247 l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~ 326 (456)
T 4dcu_A 247 IVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTM 326 (456)
T ss_dssp ETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHH
T ss_pred EEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHH
Confidence 6678884 23332 23345789999999999999887766666666553 789999999999986432 2
Q ss_pred HHHHHHHHhh-----CceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 166 NAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 166 ~~~~~~~~~~-----g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
++..+++.+. +..++++||++|.|+++|.+.+.+...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 327 KEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp HHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 3333334332 367999999999999999888766543
No 96
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.61 E-value=2.9e-08 Score=83.30 Aligned_cols=101 Identities=9% Similarity=0.011 Sum_probs=64.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh-CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l-~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ . .+.... .+.|+++|+||+|+.+..+ .....++
T Consensus 64 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 142 (180)
T 2g6b_A 64 MWDTAGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL 142 (180)
T ss_dssp EEECCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence 4467887 4455556667899999999999976543222 1 111112 3679999999999985421 2223333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
....+..++.+||++|.|++++.+.+.+..
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 143 AKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445677899999999999999887765543
No 97
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.61 E-value=5.1e-08 Score=100.75 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=33.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgt 251 (323)
..++|+|+|.+|+|||||+|+|++.....++..|+|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 367899999999999999999999988888888888
No 98
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.60 E-value=4.6e-08 Score=81.68 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=68.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh-CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l-~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......++.+|++++|+|+..+.+..+. . +.... .+.|+++|+||+|+.+..+ ..+..++
T Consensus 68 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 146 (179)
T 1z0f_A 68 IWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF 146 (179)
T ss_dssp EEECTTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4467887 44556667788999999999999765432221 1 11111 2678999999999975432 2334444
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHH
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
....+..++.+||++|.|++++.+.+.+
T Consensus 147 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 147 AEENGLLFLEASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5566788999999999999998776544
No 99
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.60 E-value=6.8e-08 Score=81.01 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=42.3
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.........|+++.+.. .+..+. .+.++||||..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 46899999999999999999999876544444566555543 233443 57899999964
No 100
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.60 E-value=8.5e-08 Score=96.05 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=66.0
Q ss_pred cchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CC
Q 020622 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NR 148 (323)
Q Consensus 73 ~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k 148 (323)
.|-...|++.+.++......+...-.. +-++||| .++...+...+..+|.+|+|+|+..+.......+...+. +.
T Consensus 57 ~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~i 135 (528)
T 3tr5_A 57 SDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHT 135 (528)
T ss_dssp HHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTC
T ss_pred cccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCC
Confidence 344455667778887777766654333 6789999 556677888899999999999999877655555444443 78
Q ss_pred CeEEEEeccCCccH
Q 020622 149 KRILVLNREDMISM 162 (323)
Q Consensus 149 ~~iiVlNK~DLl~~ 162 (323)
|+++|+||+|+...
T Consensus 136 PiivviNK~Dl~~~ 149 (528)
T 3tr5_A 136 PIMTFINKMDRDTR 149 (528)
T ss_dssp CEEEEEECTTSCCS
T ss_pred CEEEEEeCCCCccc
Confidence 99999999999643
No 101
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.59 E-value=2.8e-08 Score=83.43 Aligned_cols=101 Identities=12% Similarity=0.020 Sum_probs=68.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH-HHHHh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL-MDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~-i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ .. +..+. .+.|+++|+||+|+.+..+ ..+..++
T Consensus 65 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 143 (181)
T 2efe_B 65 IWDTAGQ-ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTY 143 (181)
T ss_dssp EEECCCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEeCCCC-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHH
Confidence 4567887 3455555677899999999999876543211 11 11111 1568999999999975432 2334444
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
....+..++.+||++|.|++++.+.+.+..
T Consensus 144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 144 AQENGLFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp HHHTTCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 555678899999999999999888776543
No 102
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.59 E-value=2.9e-08 Score=85.82 Aligned_cols=101 Identities=14% Similarity=0.011 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---hC-CCCeEEEEeccCCccHHh-HHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---LG-NRKRILVLNREDMISMAD-RNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l~-~k~~iiVlNK~DLl~~~~-~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+ .. +.|+++|+||+|+..... .....++.
T Consensus 73 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 151 (213)
T 3cph_A 73 LWDTAGQ-ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA 151 (213)
T ss_dssp EECCTTG-GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHH
Confidence 4567887 3444445667899999999999876532111 111111 11 578999999999953321 12222333
Q ss_pred HhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
...+..++++||++|.|++++.+.+.+..
T Consensus 152 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 152 KELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp HHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44577899999999999999988776543
No 103
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.8e-08 Score=84.72 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=46.7
Q ss_pred CCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCcccc--ccCCCCceeeEEEEEeCCc
Q 020622 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKD 263 (323)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~--v~~~pgtT~~~~~~~~~~~ 263 (323)
....+..+.+.+.++...... +.....++|+++|.+|||||||+|+|.+..... ++..|++|.+. ....
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~ 92 (193)
T 2ged_A 22 NKRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSG 92 (193)
T ss_dssp TTTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTT
T ss_pred HHHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCe
Confidence 344566666666555433221 112346789999999999999999999865322 23345555443 3457
Q ss_pred EEEEecCCccCC
Q 020622 264 LEFLDSPGIIPM 275 (323)
Q Consensus 264 ~~liDTPGi~~~ 275 (323)
+.++||||....
T Consensus 93 ~~l~Dt~G~~~~ 104 (193)
T 2ged_A 93 VTLVDFPGHVKL 104 (193)
T ss_dssp CSEEEETTCCBS
T ss_pred EEEEECCCCchH
Confidence 889999999643
No 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.59 E-value=3.5e-08 Score=84.81 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++. +.|+++|+||+|+.+....+++.+.+
T Consensus 77 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 155 (192)
T 2b6h_A 77 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL 155 (192)
T ss_dssp EEECC------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence 5578888 445555567789999999999998663221 122333332 67999999999997653333333332
Q ss_pred Hh-----hCceEEEecCcCCCcchhhhHHHHH
Q 020622 173 AK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~~-----~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.. .+..++.+||++|.|++++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 156 GLQHLRSRTWYVQATCATQGTGLYDGLDWLSH 187 (192)
T ss_dssp TGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence 21 2356899999999999998877654
No 105
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.58 E-value=3.3e-08 Score=84.26 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=68.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-H-H---HHHHhC-CCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-P-L---MDQWLG-NRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~-~---i~~~l~-~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+... . . +..... +.|+++|+||+|+.+... .....++
T Consensus 69 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 147 (196)
T 3tkl_A 69 IWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147 (196)
T ss_dssp EEEECCS-GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEECCCc-HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 4467887 4455556677899999999999876432211 1 1 111112 578999999999976532 1223334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
....+..++.+||++|.|++++.+.+.+..
T Consensus 148 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 148 ADSLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp HHHTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445678899999999999999877765543
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.58 E-value=3.7e-08 Score=91.79 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=45.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEE--e--CCcEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F--GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~--~--~~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|++.....++..+|+|.+..... + +..+.++||||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 4689999999999999999999875556677899998865433 2 2357899999975
No 107
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=6.4e-08 Score=82.87 Aligned_cols=58 Identities=26% Similarity=0.423 Sum_probs=45.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccc-cccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.... ...+.+|+|.....+..+. .+.++||||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 3678999999999999999999976532 4566778777766655532 58899999964
No 108
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.58 E-value=4.5e-08 Score=80.52 Aligned_cols=100 Identities=13% Similarity=-0.074 Sum_probs=67.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|.+++|+|+.++.+..+ ..+.... .+.|+++|+||+|+.+..+ .....+
T Consensus 55 l~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1kao_A 55 ILDTAGT-EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133 (167)
T ss_dssp EEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCc-hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH
Confidence 4467887 3344555567899999999999876432211 1122222 2689999999999975432 222333
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
...+.+..++.+||++|.|++++.+.+.+.
T Consensus 134 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHTSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEecCCCCcCHHHHHHHHHHH
Confidence 444567789999999999999988876543
No 109
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.58 E-value=3.8e-08 Score=82.22 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=68.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+..+. .+.|+++|+||+|+.+..+ ..+...+
T Consensus 67 ~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (179)
T 2y8e_A 67 LWDTAGQ-ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 145 (179)
T ss_dssp EEEECCS-GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHH
Confidence 4467887 3445555677899999999999876432111 1111111 2678999999999976432 2333444
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+.+.
T Consensus 146 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 146 AKELNVMFIETSAKAGYNVKQLFRRVAAA 174 (179)
T ss_dssp HHHHTCEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 55567889999999999999988876554
No 110
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.58 E-value=2.7e-08 Score=82.25 Aligned_cols=100 Identities=11% Similarity=-0.005 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..+. .+.|+++|.||+|+.+... ..+..++
T Consensus 59 ~~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (170)
T 1r2q_A 59 IWDTAGQ-ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSY 137 (170)
T ss_dssp EEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEeCCCc-HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHH
Confidence 4457887 3455556677899999999999876532211 1111221 2567889999999975422 2333344
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|+++|.+.+.+.
T Consensus 138 ~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 138 ADDNSLLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999988876543
No 111
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.58 E-value=3.9e-08 Score=99.02 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=33.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccc--cccCCCCceee
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRV 254 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~--~v~~~pgtT~~ 254 (323)
...+|+|+|.+|||||||||+|++.+.. .++..|+||+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence 3568999999999999999999998764 57888888764
No 112
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.58 E-value=8.6e-08 Score=79.18 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=41.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+. .+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35789999999999999999999754322 234455555555555433 57899999974
No 113
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=8.4e-08 Score=79.40 Aligned_cols=101 Identities=12% Similarity=-0.008 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHH---HHHh---CCCCeEEEEeccCCccHHhH--HHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLM---DQWL---GNRKRILVLNREDMISMADR--NAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i---~~~l---~~k~~iiVlNK~DLl~~~~~--~~~~ 169 (323)
+-++||+. ++.......+..+|++++|+|+.++.+.. ...+ .+.. .+.|+++|+||+|+.+..+. ....
T Consensus 55 ~~Dt~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~ 133 (172)
T 2erx_A 55 ITDTTGSH-QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE 133 (172)
T ss_dssp EEECCSCS-SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEECCCch-hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH
Confidence 44678873 34455556788999999999997653221 1112 2221 26899999999999765321 2222
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
......+..++++||++|.|++++.+.+.+..
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 134 ALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 33344567899999999999999988876554
No 114
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.58 E-value=2.8e-08 Score=95.20 Aligned_cols=57 Identities=39% Similarity=0.498 Sum_probs=44.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEE----------------------eCCcEEEEecCCcc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVR----------------------FGKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~----------------------~~~~~~liDTPGi~ 273 (323)
++|++||.||||||||+|+|.+.. ..+++.|+||.+. .... .+..+.++||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 368999999999999999999865 5778899988762 2222 23468999999997
Q ss_pred CC
Q 020622 274 PM 275 (323)
Q Consensus 274 ~~ 275 (323)
..
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 115
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.57 E-value=9.2e-08 Score=79.84 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=41.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+. .+.++||||..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 36789999999999999999999765322 223344454455555543 57899999975
No 116
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.57 E-value=5.3e-08 Score=80.83 Aligned_cols=56 Identities=23% Similarity=0.434 Sum_probs=39.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.......+..|.+ ...+.. +..+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--VETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccc--eEEEEECCEEEEEEECCCCh
Confidence 3578999999999999999999876543333322322 222333 4568899999974
No 117
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.57 E-value=1e-07 Score=80.39 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=39.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeCC---cEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|++... ....++||.+.. .+..+. .+.++||||...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 357899999999999999999997653 344455555432 233332 266899999653
No 118
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.57 E-value=2.3e-08 Score=83.80 Aligned_cols=57 Identities=26% Similarity=0.465 Sum_probs=42.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~liDTPGi~ 273 (323)
...+|+++|.+|||||||+|+|.+... .....|++|.+.. .+.. +..+.++||||..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 467899999999999999999997653 4455667665542 2333 4568899999974
No 119
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.56 E-value=9.1e-08 Score=80.01 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=41.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|++|.+. ..+..+. .+.++||||..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 467899999999999999999997654 345556666554 3344443 47899999964
No 120
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.56 E-value=1.3e-07 Score=77.78 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=37.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|.+... ....+.|+... ..+..+. .+.++||||..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 57899999999999999999997653 23333343332 2233433 57899999964
No 121
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.55 E-value=1.6e-08 Score=85.77 Aligned_cols=98 Identities=10% Similarity=0.039 Sum_probs=65.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....++..+.+
T Consensus 69 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 147 (181)
T 2h17_A 69 MWDIGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 147 (181)
T ss_dssp EEEESSS-GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHh
Confidence 4567887 3344444566789999999999987643221 1233333 367899999999997643233333332
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHH
Q 020622 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
. ..+..++.+||++|.|++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 148 KLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp TGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 1 2235789999999999998877654
No 122
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.55 E-value=5.3e-08 Score=80.46 Aligned_cols=99 Identities=9% Similarity=-0.012 Sum_probs=67.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHhCCCCeEEEEeccCCccHHh--HHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWLGNRKRILVLNREDMISMAD--RNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l~~k~~iiVlNK~DLl~~~~--~~~~~~~~ 172 (323)
+-++||+. ++.......+..+|++++|+|+.++.+..+ .. +.....+.|+++|+||+|+.+..+ ..+..+..
T Consensus 58 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 136 (168)
T 1z2a_A 58 LWDTAGQE-EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA 136 (168)
T ss_dssp EECCTTGG-GTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred EEcCCCcH-hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHH
Confidence 34678873 344445567789999999999976542211 11 111223789999999999976432 22333444
Q ss_pred HhhCceEEEecCcCCCcchhhhHHHHH
Q 020622 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
...+..++.+||++|.|++++.+.+.+
T Consensus 137 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 137 KRLKLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp HHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred HHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 556788999999999999998877654
No 123
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.55 E-value=2.7e-08 Score=94.46 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=44.9
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeC--CcEEEEecCCccC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG--KDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~--~~~~liDTPGi~~ 274 (323)
+|+|+|+||||||||||+|.+.+ ..+++.|+||.+.. .+.++ ..+.|+||||+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 58999999999999999999765 46788999998743 34443 5699999999863
No 124
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.54 E-value=1.1e-07 Score=81.42 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+.... .+.|+++|+||+|+.+..+ ..+..++
T Consensus 79 l~Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 157 (192)
T 2il1_A 79 IWDTAGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF 157 (192)
T ss_dssp EEEECCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4567887 44556667778999999999999875433221 111111 2678999999999976432 1222233
Q ss_pred HHhh-CceEEEecCcCCCcchhhhHHHHH
Q 020622 172 FAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~-g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.... +..++.+||++|.|++++.+.+.+
T Consensus 158 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 158 AQQITGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp HHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 3332 578999999999999998877654
No 125
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.54 E-value=1.1e-07 Score=79.51 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=38.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++... .....|.++.+ ...+..+. .+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 357899999999999999999997643 23333444433 33444444 68899999963
No 126
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.54 E-value=2.5e-08 Score=83.46 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hCCCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ +..+ ..+.|+++|+||+|+.+... ......
T Consensus 62 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 138 (181)
T 3tw8_B 62 IWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTSAESFVN--VKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYK 138 (181)
T ss_dssp EEEETTG-GGCSSCCGGGGTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEcCCCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHH
Confidence 3467776 3333344455788999999999976532211 2222 22578999999999876432 223334
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.....+..++.+||++|.|++++.+.+.+...
T Consensus 139 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 139 FAGQMGIQLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44556778999999999999999887766543
No 127
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.53 E-value=8.9e-08 Score=78.99 Aligned_cols=99 Identities=10% Similarity=-0.075 Sum_probs=65.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ .. +.... .+.|+++|+||+|+.+..+ ..+..+
T Consensus 55 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1c1y_A 55 ILDTAGT-EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 133 (167)
T ss_dssp EEEECSS-CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEECCCh-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH
Confidence 3456776 2334445566788999999999876532211 11 22222 2689999999999976432 222233
Q ss_pred HHHhh-CceEEEecCcCCCcchhhhHHHHH
Q 020622 171 YFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 171 ~~~~~-g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+.... +..++++||++|.|++++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 134 LARQWCNCAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp HHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHccCCcEEEecCCCCCCHHHHHHHHHH
Confidence 34444 578999999999999998877654
No 128
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.53 E-value=7.1e-08 Score=81.35 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=66.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ . .+.... .+.|+++|+||+|+.+..+ ..+..+
T Consensus 70 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~ 148 (183)
T 3kkq_A 70 VLDTAGQ-EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148 (183)
T ss_dssp EEECCSC-GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred EEECCCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH
Confidence 3567887 3444555567889999999999986532211 1 122222 2679999999999875321 222333
Q ss_pred HHHhhCceEEEecCc-CCCcchhhhHHHHHh
Q 020622 171 YFAKQGTKVIFSNGQ-LGMGTMKLSRLAKAL 200 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~-~g~gi~~L~~~l~~l 200 (323)
.....+..++.+||+ +|.|++++.+.+.+.
T Consensus 149 ~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp HHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred HHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence 444556789999999 999999988776543
No 129
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.53 E-value=6.9e-08 Score=82.03 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=68.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh--CCCCeEEEEeccCCccH-HhHHHHHHHHHh
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL--GNRKRILVLNREDMISM-ADRNAWATYFAK 174 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l--~~k~~iiVlNK~DLl~~-~~~~~~~~~~~~ 174 (323)
+-++||+ .++.......+..+|++|+|+|+..+.+..+. .+..+. ...|+++|+||+|+... ....+..+++.+
T Consensus 97 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~ 175 (208)
T 3clv_A 97 IWDTAGQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQD 175 (208)
T ss_dssp EEECTTG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHH
Confidence 4467887 34555566778999999999999876432211 111221 25899999999993221 123444555666
Q ss_pred hCceEEEecCcCCCcchhhhHHHHHh
Q 020622 175 QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.+..++++||++|.|++++.+.+.+.
T Consensus 176 ~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 176 NNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp TTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 77889999999999999988876554
No 130
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.53 E-value=1.4e-07 Score=77.86 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=39.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+... .....|.++.+ ...+..+. .+.++||||...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 357899999999999999999997643 22223333333 23334333 588999999753
No 131
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.52 E-value=1.6e-07 Score=80.14 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=41.5
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCcccccc-CCCCceeeEEEEEeC---CcEEEEecCCccC
Q 020622 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~-~~pgtT~~~~~~~~~---~~~~liDTPGi~~ 274 (323)
...++|+|+|.+|||||||+|+|.+....... +..|++.....+..+ ..+.++||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 34689999999999999999999986543222 223444443444433 3578999999853
No 132
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.52 E-value=1e-07 Score=81.06 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....++..+.+
T Consensus 64 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 142 (181)
T 1fzq_A 64 VWDIGGQ-RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL 142 (181)
T ss_dssp EEECSSC-GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHh
Confidence 4467887 3455555677899999999999876533211 2233333 257999999999997654333333332
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
. ..+..++.+||++|.|++++.+.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 143 NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175 (181)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CchhccCCceEEEEccCCCCCCHHHHHHHHHHH
Confidence 1 123568999999999999988876543
No 133
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.52 E-value=1.6e-07 Score=79.92 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=42.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+.... .+.++||||..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 46899999999999999999999765322 233445555555454432 57899999964
No 134
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.52 E-value=1.7e-07 Score=80.47 Aligned_cols=101 Identities=9% Similarity=-0.095 Sum_probs=69.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+..... +.|+++|+||+|+.+..+ ..+..+
T Consensus 66 l~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (206)
T 2bov_A 66 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 144 (206)
T ss_dssp EEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEcCCCh-hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH
Confidence 4567887 3455555677889999999999876432111 11222222 689999999999976432 233444
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+....+..++.+||++|.|++++.+.+.+..
T Consensus 145 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 145 RAEQWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp HHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4555678899999999999999888765543
No 135
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.52 E-value=2.7e-08 Score=94.52 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
....|+|+|+||||||||+|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999985
No 136
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.52 E-value=3.4e-08 Score=83.02 Aligned_cols=99 Identities=11% Similarity=-0.093 Sum_probs=63.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCeEEEEeccCCccHHhH--------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISMADR-------- 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~iiVlNK~DLl~~~~~-------- 165 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+. ....+.|+++|+||+|+.+....
T Consensus 60 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 138 (182)
T 3bwd_D 60 LWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAV 138 (182)
T ss_dssp EECCCC--CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CC
T ss_pred EEECCCC-hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCC
Confidence 3456776 23333344557889999999998765432211 122 22236899999999999764331
Q ss_pred ----HHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHH
Q 020622 166 ----NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 166 ----~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+..++....+. .++.+||++|.|++++.+.+.+
T Consensus 139 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 139 PITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 222333344564 8999999999999998877654
No 137
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.52 E-value=6.7e-08 Score=79.99 Aligned_cols=100 Identities=9% Similarity=-0.067 Sum_probs=67.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+...+ ...|+++|+||+|+.+..+ ......+
T Consensus 59 ~~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~ 137 (170)
T 1z0j_A 59 IWDTAGL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY 137 (170)
T ss_dssp EEEECCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEcCCCc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH
Confidence 4467887 3455555677899999999999876543221 1111111 2567899999999986432 1222333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|+++|.+.+.+.
T Consensus 138 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 138 ADSIHAIFVETSAKNAININELFIEISRR 166 (170)
T ss_dssp HHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 44567889999999999999988776543
No 138
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.52 E-value=9.1e-08 Score=81.04 Aligned_cols=56 Identities=23% Similarity=0.381 Sum_probs=39.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.......+..|.+. ..+.. +..+.++||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEECCEEEEEEECCCCH
Confidence 35789999999999999999999866322333334332 22333 4468899999973
No 139
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.51 E-value=5.9e-08 Score=82.51 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=42.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.....+.+..|++.. .+.. +..+.++||||..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE--EEEETTEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE--EEEECCEEEEEEECCCCH
Confidence 357899999999999999999998765455566665433 2222 4468899999974
No 140
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.51 E-value=1.6e-07 Score=78.68 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=40.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccccc-CCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~-~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++....... +..|++.....+.... .+.++||||..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 3578999999999999999999976543221 2234444444444432 58899999964
No 141
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.51 E-value=7.9e-08 Score=81.41 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=42.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.......+..|++..... ..+..+.++||||..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV-INNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEE-ETTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEE-ECCEEEEEEECCCCH
Confidence 467899999999999999999998765555666665543221 124568899999974
No 142
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.51 E-value=9.2e-08 Score=83.71 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=45.6
Q ss_pred cceEeeeecCCCCChhhHHHhhh-cCccccccCCCCceeeEEEEEeCC---cEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~-~~~~~~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+++ +.......+.+|+|.....+.... .+.++||||...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 46899999999999999999955 333445677888888876665543 578999999753
No 143
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.50 E-value=2.5e-08 Score=84.01 Aligned_cols=101 Identities=12% Similarity=0.009 Sum_probs=64.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+. ++.......+..+|++++|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+.....+..+++
T Consensus 66 i~Dt~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~ 144 (183)
T 1moz_A 66 VWDLGGQT-SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL 144 (183)
T ss_dssp EEEEC-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCCH-hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence 44577773 333344456789999999999987643221 2233333 357899999999997653333333333
Q ss_pred Hh-----hCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 173 AK-----QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 173 ~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.. .+..++.+||++|.|++++.+.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 145 NLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 21 234689999999999999888776544
No 144
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.50 E-value=1.7e-07 Score=77.62 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=39.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 467899999999999999999997643 223344444443 3344432 47788999963
No 145
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.50 E-value=2.2e-07 Score=79.90 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=41.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++..... ..+..|++.....+.... .+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 35789999999999999999999765322 223345555444444432 57899999974
No 146
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.50 E-value=6.4e-08 Score=79.97 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=66.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccHH---h--HHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA---D--RNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~~---~--~~~~ 168 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+..+. .+.|+++|+||+|+.+.. + ....
T Consensus 56 ~~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~ 134 (170)
T 1ek0_A 56 IWDTAGQ-ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEG 134 (170)
T ss_dssp EEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHH
T ss_pred EEECCCC-hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHH
Confidence 4467887 34555566778999999999999865332111 111121 267899999999997541 1 1222
Q ss_pred HHHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020622 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+.....+..++.+||++|.|++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHT
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2334456788999999999999998877654
No 147
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=7.6e-08 Score=82.40 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=69.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---h-----CCCCeEEEEeccCCccHHh--HHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---L-----GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~---l-----~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+.. .+..+ + .+.|+++|+||+|+.+..+ .++..
T Consensus 76 i~Dt~G~-~~~~~~~~~~~~~~d~iilV~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~ 152 (192)
T 2fg5_A 76 IWDTAGQ-ERFHSLAPMYYRGSAAAVIVYDITKQDSFY--TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 152 (192)
T ss_dssp EEEECCS-GGGGGGTHHHHTTCSEEEEEEETTCTHHHH--HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEcCCCc-hhhHhhhHHhhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHH
Confidence 4467887 345555567789999999999987654221 11222 1 2678999999999975322 23444
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
++..+.+..++.+||++|.|+++|.+.+.+..
T Consensus 153 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 153 EYAESIGAIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp HHHHTTTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 45556678899999999999999988776543
No 148
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.50 E-value=1.2e-07 Score=81.60 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=37.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcc-ccccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++... ....+..|++.....+.++. .+.|+||||..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 367899999999999999999997653 23344556655555555543 47899999964
No 149
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.50 E-value=2e-07 Score=80.61 Aligned_cols=101 Identities=9% Similarity=-0.017 Sum_probs=69.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+. .+.|+++|+||+|+.+..+ .++..++
T Consensus 82 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 160 (201)
T 2hup_A 82 IWDTAGQ-ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSL 160 (201)
T ss_dssp EECCTTC-GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCc-HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHH
Confidence 5567898 4455666677899999999999876533211 1111111 3578999999999976321 2233344
Q ss_pred HHhhCc-eEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
....+. .++.+||++|.|++++.+.+.+..
T Consensus 161 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 161 AEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455677 899999999999999887765543
No 150
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.50 E-value=9.4e-08 Score=79.96 Aligned_cols=100 Identities=16% Similarity=0.046 Sum_probs=66.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh---CCCC-eEEEEeccCCccHHh--HHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL---GNRK-RILVLNREDMISMAD--RNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l---~~k~-~iiVlNK~DLl~~~~--~~~~ 168 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+. . +..+. ...| +++|+||+|+.+..+ .++.
T Consensus 60 ~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~ 138 (178)
T 2hxs_A 60 IWDIGGQ-TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH 138 (178)
T ss_dssp EEECTTC-CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH
T ss_pred EEECCCC-ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH
Confidence 4567887 33444555678999999999999765432211 1 11111 1456 789999999975321 2223
Q ss_pred HHHHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.++....+..++.+||++|.|++++.+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 139 LRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp HHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 33444567889999999999999988876554
No 151
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.50 E-value=4.6e-08 Score=95.39 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=37.1
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEE--Ee-CC-cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GK-DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~--~~-~~-~~~liDTPGi~~ 274 (323)
.++|+|+|.+|+|||||+|+|++.....++..+|||.+.... .. +. .+.|+||||+..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 578999999999999999999998776788899999885433 33 23 789999999974
No 152
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.50 E-value=3e-08 Score=83.09 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=63.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHHhh--
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-- 175 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~~~-- 175 (323)
+-++||+. ++.......+..+|++++|+|+.++...........+. +.|+++|+||+|+.+... .+..+.+...
T Consensus 59 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~ 136 (178)
T 2lkc_A 59 FLDTPGHE-AFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNL 136 (178)
T ss_dssp ESCCCSSS-SSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTC
T ss_pred EEECCCCH-HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCc
Confidence 34456652 12222223457899999999988765443333333332 789999999999986421 1222222221
Q ss_pred -----C--ceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 176 -----G--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 176 -----g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
+ ..++++||++|.|+++|.+.+.+...
T Consensus 137 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 137 VPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp CBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred ChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 1 47899999999999999887765543
No 153
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.50 E-value=1.9e-07 Score=79.39 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=40.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc-ccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~-v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++..... ..+..|++.....+..+. .+.|+||||..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 46899999999999999999999754322 122233333334444443 58899999964
No 154
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.50 E-value=1.7e-07 Score=77.23 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=37.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+.... .....|+... ..+..+. .+.++||||...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 478999999999999999999975431 2222233222 2223332 478999999753
No 155
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.50 E-value=1.2e-07 Score=78.47 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=37.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|++... .....|+++.+. ..+..+. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 57899999999999999999997653 334445555443 3344433 478999999753
No 156
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=2.1e-07 Score=79.43 Aligned_cols=100 Identities=12% Similarity=-0.051 Sum_probs=68.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.+... ..+....
T Consensus 76 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 154 (191)
T 3dz8_A 76 IWDTAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLL 154 (191)
T ss_dssp EECHHHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEeCCCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 4567887 5566677788999999999999876432211 1111111 2678999999999965422 1222233
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+.+.
T Consensus 155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 155 AEQLGFDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567889999999999999988776543
No 157
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.49 E-value=1.7e-07 Score=78.15 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=40.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|++... .....|.++.+. ..+.++. .+.++||||..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 57899999999999999999996543 333445555553 3344443 58899999964
No 158
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.49 E-value=1.8e-07 Score=81.72 Aligned_cols=101 Identities=12% Similarity=-0.001 Sum_probs=58.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCeEEEEeccCCccHHhHH-------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADRN------- 166 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~iiVlNK~DLl~~~~~~------- 166 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+.+.....
T Consensus 86 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 164 (214)
T 2j1l_A 86 IWDTAGQ-DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNG 164 (214)
T ss_dssp EEEC----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTT
T ss_pred EEECCCc-hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccc
Confidence 4567887 44555555678899999999998765332111 111222378999999999998654221
Q ss_pred -------HHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHHhh
Q 020622 167 -------AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 167 -------~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+..++.+..+. .++.+||++|.|++++.+.+.+..
T Consensus 165 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 165 LEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 12233344565 899999999999999888765543
No 159
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.49 E-value=1.4e-07 Score=79.53 Aligned_cols=101 Identities=11% Similarity=-0.037 Sum_probs=66.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCeEEEEeccCCccHHhH-HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMADR-NAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~iiVlNK~DLl~~~~~-~~~~~~ 171 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+.... .+.|+++|+||+|+.+.... ....+.
T Consensus 56 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~ 134 (189)
T 4dsu_A 56 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDL 134 (189)
T ss_dssp EEECCCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHH
Confidence 3467887 4455555677889999999999876432111 1111222 26799999999999754322 222233
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
....+..++.+||++|.|++++.+.+.+..
T Consensus 135 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 344577899999999999999888766544
No 160
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.48 E-value=7.8e-08 Score=80.41 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=67.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+. ++.......+..+|++++|+|+.++.+..+ ..+..+ . .+.|+++|+||+|+.+..+ ......
T Consensus 61 ~~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 139 (181)
T 2fn4_A 61 ILDTAGQE-EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139 (181)
T ss_dssp EEECCCTT-TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCch-hhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 45678873 344445566789999999999876432211 111122 1 2679999999999976432 122233
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+....+..++.+||++|.|++++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp HHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 3445577899999999999999888766543
No 161
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=1.9e-07 Score=79.29 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=41.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc-cccCCCCceeeEEEEEeCC---cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+.... ...+..|++.....+.+.. .+.|+||||...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 578999999999999999999976532 2233345555545555543 478999999753
No 162
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.48 E-value=1.7e-07 Score=80.34 Aligned_cols=57 Identities=28% Similarity=0.408 Sum_probs=37.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCC--ceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pg--tT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.... ....|. ++.....+.++. .+.++||||..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 4678999999999999999999976532 222333 333344455543 57899999964
No 163
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=79.74 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=38.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.........|.+......+.. +..+.++||||..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCH
Confidence 367899999999999999999998653222222211112222333 4578999999964
No 164
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.48 E-value=8.4e-08 Score=80.77 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=39.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCH
Confidence 467899999999999999999997655445555554432 2333 4568899999985
No 165
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.47 E-value=2.2e-07 Score=78.08 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=38.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+... ....+.|+.. ...+..+. .+.++||||...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence 357899999999999999999996542 2333333332 22333433 467999999753
No 166
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=1.2e-07 Score=80.69 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=39.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINNTRFLMWDIGGQE 71 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEETTEEEEEEECCC--
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEECCEEEEEEECCCCH
Confidence 57899999999999999999997655444555554432 2222 4568899999985
No 167
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.47 E-value=2.7e-07 Score=75.53 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=37.7
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+.... ...+.++.+ ...+..+. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchh
Confidence 468999999999999999999976432 222333333 22233332 367899999753
No 168
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.47 E-value=1.8e-07 Score=80.44 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=65.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCeEEEEeccCCccHHh--------H
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--------R 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~iiVlNK~DLl~~~~--------~ 165 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+... .
T Consensus 81 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~ 159 (199)
T 2p5s_A 81 LWDTAGQ-ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPG 159 (199)
T ss_dssp EEECTTC-TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCH
T ss_pred EEECCCC-cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCH
Confidence 5567887 44556666778999999999998765432221 111111 2689999999999974211 1
Q ss_pred HHHHHHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020622 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
....++....+..++.+||++|.|++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 160 HFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp HHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 1222334456778999999999999988776554
No 169
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.47 E-value=1.6e-08 Score=86.18 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=64.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+. ++.......++.+|++++|+|+.++.+.. ...+..++. +.|+++|+||+|+.+.....+..+.+
T Consensus 70 ~~Dt~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 148 (189)
T 2x77_A 70 VWDLGGQT-GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQL 148 (189)
T ss_dssp EEEECCSS-SSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCCH-hHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence 34566652 22222233467899999999998764322 222334432 57999999999998653333333322
Q ss_pred H-----hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
. ..+..++.+||++|.|++++.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 149 GVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 1 2235789999999999999888766543
No 170
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.47 E-value=2.8e-07 Score=77.37 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=39.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... ....+.|+... ..+..+. .+.|+||||..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 357899999999999999999997653 23334444432 2233433 57899999964
No 171
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.46 E-value=1.1e-07 Score=80.81 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=39.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.......+..|.+. ..+.. +..+.++||||..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEETTEEEEEEEECCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEECCEEEEEEECCCCH
Confidence 35789999999999999999998765443333334332 22333 4468899999974
No 172
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.46 E-value=8.9e-08 Score=83.41 Aligned_cols=101 Identities=8% Similarity=-0.079 Sum_probs=65.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+. ++.......+..+|++|+|+|+.++.+..+. .+..... +.|+++|+||+|+.+..+ .....++
T Consensus 65 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 143 (218)
T 4djt_A 65 VWDTAGQE-KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEV 143 (218)
T ss_dssp EEEECSGG-GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHH
T ss_pred EEecCCch-hhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 44678873 3333344567889999999999865433221 1112222 579999999999986532 1222233
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
....+..++.+||++|.|++++.+.+.+..
T Consensus 144 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 144 LKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp TTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred HHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 344567899999999999999988776554
No 173
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.46 E-value=2.5e-07 Score=78.05 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=41.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 468899999999999999999997653 233345555443 3344443 57899999964
No 174
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.46 E-value=1.3e-07 Score=81.10 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=59.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-------CCCCeEEEEeccCCcc-HHh--HHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMIS-MAD--RNA 167 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-------~~k~~iiVlNK~DLl~-~~~--~~~ 167 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+. .+.|+++|+||+|+.+ ..+ ..+
T Consensus 77 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~ 155 (208)
T 2yc2_C 77 LLDTAGS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM 155 (208)
T ss_dssp EEETTTT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHH
T ss_pred EEECCCc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHH
Confidence 5568998 4555555566789999999999876543211 1111111 3678999999999986 322 233
Q ss_pred HHHHHHhhCceEEEecCcC-CCcchhhhHHHHHh
Q 020622 168 WATYFAKQGTKVIFSNGQL-GMGTMKLSRLAKAL 200 (323)
Q Consensus 168 ~~~~~~~~g~~vi~iSa~~-g~gi~~L~~~l~~l 200 (323)
..++....+..++.+||++ |.|++++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 156 AQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp HHHHHHHTTCEEEECCC-------CHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHH
Confidence 3444556678899999999 99999988876654
No 175
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.46 E-value=2.4e-07 Score=78.81 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=41.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++... .....|++|.+. ..+..+. .+.++||||..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 367999999999999999999997643 344456655554 3344443 47899999964
No 176
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.46 E-value=9.2e-08 Score=80.67 Aligned_cols=99 Identities=9% Similarity=0.047 Sum_probs=57.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCeEEEEeccCCccHHh--HHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+.. .+..++ .+.|+++|+||+|+.+..+ ..+..
T Consensus 61 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 137 (183)
T 2fu5_C 61 IWDTAGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 137 (183)
T ss_dssp EEEC----------CCTTTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHH
T ss_pred EEcCCCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHH
Confidence 4567887 344444456678999999999987653211 122221 2579999999999975321 22333
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
++....+..++.+||++|.|++++.+.+.+..
T Consensus 138 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 138 KLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp HHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34455678899999999999999888765543
No 177
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=2.4e-07 Score=79.00 Aligned_cols=101 Identities=12% Similarity=-0.003 Sum_probs=68.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHH---HHHHh---CCCCeEEEEeccCCccHHh-HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPL---MDQWL---GNRKRILVLNREDMISMAD-RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~---i~~~l---~~k~~iiVlNK~DLl~~~~-~~~~~~ 170 (323)
+-++||+. ++.......+..+|++++|+|+.++.+.. ... +.... .+.|+++|+||+|+.+... ......
T Consensus 60 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 138 (199)
T 2gf0_A 60 ITDTTGSH-QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA 138 (199)
T ss_dssp EEECCGGG-SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred EEeCCChH-HhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH
Confidence 45678873 34455556788999999999987643221 111 22221 2579999999999976321 222233
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.....+..++.+||++|.|+++|.+.+.+..
T Consensus 139 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 139 VAQEWKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp HHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 3445677899999999999999988876654
No 178
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.45 E-value=2e-07 Score=79.50 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=40.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccc-cCCCCceeeEEEEEeCC---cEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+...... .+..|++.....+..+. .+.|+||||...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 468999999999999999999997654322 22234444444555544 578999999753
No 179
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.45 E-value=1.8e-07 Score=76.65 Aligned_cols=100 Identities=10% Similarity=-0.029 Sum_probs=65.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCeEEEEeccCCccHHh-HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD-RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~iiVlNK~DLl~~~~-~~~~~~~ 171 (323)
+-++||+. ++.......+..+|.+++|+|+.++.+..+ ..+..... +.|+++|+||+|+.+... .....+.
T Consensus 55 ~~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 133 (166)
T 2ce2_X 55 ILDTAGQE-EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDL 133 (166)
T ss_dssp EEECCCCS-SCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred EEECCCch-hhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHH
Confidence 34578873 334445567789999999999875432111 11112222 689999999999986322 2223333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..+.+..++.+|+++|.|++++.+.+.+.
T Consensus 134 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 134 ARSYGIPYIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp HHHHTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 44567789999999999999988776543
No 180
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.45 E-value=5.2e-08 Score=82.04 Aligned_cols=101 Identities=15% Similarity=-0.034 Sum_probs=65.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCeEEEEeccCCccHHhH--------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR-------- 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~iiVlNK~DLl~~~~~-------- 165 (323)
+-++||+. ++.......+..+|++++|+|+.++.+..+. .+... ..+.|+++|+||+|+.+....
T Consensus 57 i~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (186)
T 1mh1_A 57 LWDTAGQE-DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135 (186)
T ss_dssp EECCCCSG-GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred EEECCCCH-hHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccc
Confidence 44678873 3333333456889999999998765332221 12222 237899999999999764321
Q ss_pred ------HHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHHhh
Q 020622 166 ------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 166 ------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.+..+.....+. .++++||++|.|++++.+.+.+..
T Consensus 136 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 122233344565 899999999999999888766543
No 181
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.45 E-value=4.4e-08 Score=84.98 Aligned_cols=101 Identities=11% Similarity=0.000 Sum_probs=64.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCeEEEEeccCCccHHh---------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD--------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~iiVlNK~DLl~~~~--------- 164 (323)
+-++||+. ++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|+||+|+.+...
T Consensus 61 i~Dt~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v 139 (212)
T 2j0v_A 61 LWDTAGQE-DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVI 139 (212)
T ss_dssp EECCCCCC-CCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCC
T ss_pred EEECCCcH-HHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCC
Confidence 33566662 222233345789999999999876543211 11112223789999999999976432
Q ss_pred -HHHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHHhh
Q 020622 165 -RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 165 -~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
..+..+.....+. .++.+||++|.|++++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 2222333445564 899999999999999888766543
No 182
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.45 E-value=3.1e-07 Score=78.76 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=40.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+|+|.+|||||||+|+|.+... ....++|+.+. ..+.++. .+.|+||||..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 367999999999999999999997653 33344444442 2334443 57899999974
No 183
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.45 E-value=3.7e-07 Score=90.44 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=65.9
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcch
Q 020622 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (323)
Q Consensus 112 ~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (323)
+.....++.+|++|+|+|+..+.+..+..+.+.+.++|+++|+||+|+.+....++..+++ ..+..++++||++|.|++
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~ 393 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLE 393 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence 4455678999999999999887765556666667789999999999997542222222222 223578999999999999
Q ss_pred hhhHHHHHh
Q 020622 192 KLSRLAKAL 200 (323)
Q Consensus 192 ~L~~~l~~l 200 (323)
+|.+.+.+.
T Consensus 394 eL~~~l~~~ 402 (482)
T 1xzp_A 394 KLEESIYRE 402 (482)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887664
No 184
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.45 E-value=2.1e-07 Score=78.97 Aligned_cols=101 Identities=11% Similarity=-0.013 Sum_probs=62.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC--CCCeEEEEeccCCccHH-hHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA-DRNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~--~k~~iiVlNK~DLl~~~-~~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+..+.. +.|+++|+||+|+.+.. ...+..+.
T Consensus 73 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 151 (190)
T 3con_A 73 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHEL 151 (190)
T ss_dssp EEECCC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred EEECCCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHH
Confidence 4567887 44555556778999999999998765432111 1222222 68999999999997632 12233334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
..+.+..++.+|+++|.|++++.+.+.+..
T Consensus 152 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445677899999999999999887766543
No 185
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.45 E-value=2.1e-07 Score=92.06 Aligned_cols=99 Identities=19% Similarity=0.097 Sum_probs=64.7
Q ss_pred cccccchHHHHHHH--------HHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhCCCCeEEEEeccCCccHHhHHH
Q 020622 100 VQWYPGHIAKTEKE--------LKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNA 167 (323)
Q Consensus 100 i~~~PGh~~k~~~~--------l~~~i~~aDlIl~VvDar~~~~~----~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~ 167 (323)
+-++||+. ++... ....+..+|++|+|+|+..+.+. ....+...+.++|+++|+||+|+.+......
T Consensus 285 liDT~G~~-~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~ 363 (476)
T 3gee_A 285 LTDTAGLR-EAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI 363 (476)
T ss_dssp EEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH
T ss_pred EEECCCCC-cchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH
Confidence 55678873 23222 23346889999999999987765 3444555566899999999999987654322
Q ss_pred HHHHHHhh-CceEEEecCcCCCcchhhhHHHHHhh
Q 020622 168 WATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 168 ~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+.+.+. ...++++||++|.|+++|.+.+.+..
T Consensus 364 --~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 364 --RAIADGTGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp --HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred --HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 223332 35789999999999999988776544
No 186
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.45 E-value=7.9e-08 Score=79.57 Aligned_cols=100 Identities=14% Similarity=0.001 Sum_probs=65.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCeEEEEeccCCccHHh-HHHHHHHHH
Q 020622 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD-RNAWATYFA 173 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~iiVlNK~DLl~~~~-~~~~~~~~~ 173 (323)
-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..+ . .+.|+++|+||+|+.+... .....++.+
T Consensus 57 ~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (170)
T 1g16_A 57 WDTAGQ-ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 135 (170)
T ss_dssp ECCTTG-GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH
T ss_pred EeCCCC-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH
Confidence 367887 3344445567789999999999876543211 111111 1 2678999999999953221 222333344
Q ss_pred hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 174 KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+.+..++.+||++|.|++++.+.+.+..
T Consensus 136 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 136 ELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5677899999999999999888766543
No 187
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.44 E-value=3.2e-07 Score=77.86 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=37.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++... ....++|+.+. ..+..+. .+.|+||||..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 357899999999999999999997643 23334444432 2233332 37899999964
No 188
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.44 E-value=2.8e-07 Score=79.61 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=41.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|++... .....|+++.+. ..+.++. .+.|+||||...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 357899999999999999999997643 334455555543 3344443 588999999753
No 189
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.44 E-value=1.9e-07 Score=81.27 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccc-cccCCCCceeeEEEEEeC----CcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~----~~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|++.... ......+++.....+... ..+.++||||...
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchh
Confidence 3679999999999999999999965432 223444554444333332 2378999999864
No 190
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.44 E-value=3e-07 Score=77.98 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
..++|+++|.+|||||||+|+|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 46889999999999999999999865
No 191
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.44 E-value=1.6e-07 Score=79.31 Aligned_cols=100 Identities=9% Similarity=-0.040 Sum_probs=68.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHh-CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i---~~~l-~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+ .... .+.|+++|+||+|+.+..+ ..+..++
T Consensus 63 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 141 (186)
T 2bme_A 63 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF 141 (186)
T ss_dssp EEEECCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4567887 44555566778999999999998765432211 11 1111 2678999999999975422 2333344
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+.+.
T Consensus 142 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 142 AQENELMFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 55567889999999999999988776543
No 192
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.44 E-value=2e-07 Score=80.12 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=67.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---h-----CCCCeEEEEeccCCccHHh--HHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---L-----GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~---l-----~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+.. .+..+ + .+.|+++|+||+|+.+... .....
T Consensus 61 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 137 (203)
T 1zbd_A 61 IWDTAGL-ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGR 137 (203)
T ss_dssp EEEECCS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHH
T ss_pred EEECCCc-hhhcchHHHhhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHH
Confidence 4567888 445555667789999999999987653211 11111 1 2679999999999976421 22233
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+.....+..++.+||++|.|++++.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 138 QLADHLGFEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp HHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344567889999999999999988776554
No 193
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.44 E-value=3.7e-07 Score=75.61 Aligned_cols=98 Identities=16% Similarity=-0.027 Sum_probs=61.5
Q ss_pred ccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCeEEEEeccCCccHHh--HHHHHH
Q 020622 101 QWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~-~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
-++||+. ++...+. ..+..+|++++|+|+.++.+.. ...+..+.. +.|+++|+||+|+.+..+ .....+
T Consensus 56 ~D~~g~~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 134 (169)
T 3q85_A 56 YDIWEQG-DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH 134 (169)
T ss_dssp ECCCCC---------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EECCCcc-ccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH
Confidence 3567773 3333233 4478899999999987643221 122222221 679999999999975432 222333
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+....+..++.+||++|.|++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 135 LAGTLSCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp HHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence 44556788999999999999998776654
No 194
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.44 E-value=2.6e-07 Score=78.76 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=38.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccc--cCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v--~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
...+|+++|.+|||||||+|+|++.....+ .+..|.+.. .+.. ...+.++||||..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCH
Confidence 457899999999999999999998765443 333443322 2232 3468899999984
No 195
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.43 E-value=1.5e-07 Score=88.50 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=73.3
Q ss_pred ccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCeEEEEe
Q 020622 85 DLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLN 155 (323)
Q Consensus 85 ~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~iiVlN 155 (323)
+++.++..+...... +-++||+ .++.......+..+|++|+|+|+.++.+.. ...+..++. +.|+++|+|
T Consensus 196 T~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~N 274 (329)
T 3o47_A 196 TIGFNVETVEYKNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 274 (329)
T ss_dssp ETTEEEEEEEETTEEEEEEECC------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred ccceEEEEEecCcEEEEEEECCCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEE
Confidence 455555444433222 6678997 556666667789999999999997654322 223333332 678999999
Q ss_pred ccCCccHHhHHHHHHHHHh-----hCceEEEecCcCCCcchhhhHHHHHh
Q 020622 156 REDMISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 156 K~DLl~~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
|+|+.+.....++...+.. .+..++.+||++|.|+++|++.+.+.
T Consensus 275 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 275 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324 (329)
T ss_dssp CTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 9999875444444443322 12468999999999999988876554
No 196
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.43 E-value=2.7e-07 Score=79.28 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=40.3
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++... .....|.++.+. ..+..+. .+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 357899999999999999999997653 223344444443 3333333 57899999964
No 197
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.43 E-value=9.9e-08 Score=88.72 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=72.6
Q ss_pred cccccchHHHHHHHHH--------HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCcc-HHhHHHH
Q 020622 100 VQWYPGHIAKTEKELK--------DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~--------~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~-~~~~~~~ 168 (323)
+-++||+..+....+. ..++.+|++++|+|+.. ++..+..+.+.+. ++|+++|+||+|+.. .....+.
T Consensus 60 ~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPH 138 (301)
T ss_dssp EESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHH
T ss_pred EEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHH
Confidence 4568998622222222 33578999999999977 6555556666665 789999999999987 4444455
Q ss_pred HHHHHh-hCc-eEEEecCcCCCcchhhhHHHHHhhh
Q 020622 169 ATYFAK-QGT-KVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 169 ~~~~~~-~g~-~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.+.+.+ .+. .++++||++|.|+++|.+.+....+
T Consensus 139 l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 139 LQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 555544 453 6899999999999999888766543
No 198
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.43 E-value=1.9e-07 Score=79.63 Aligned_cols=100 Identities=8% Similarity=-0.049 Sum_probs=67.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+..+.+... ..+..+. .+.|+++|+||+|+.+..+ ......+
T Consensus 78 i~Dt~G~-~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 156 (193)
T 2oil_A 78 IWDTAGL-ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMF 156 (193)
T ss_dssp EEEESCC-CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEeCCCc-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHH
Confidence 4467887 3344455667899999999999976543211 1122221 2578999999999976422 2233334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+.+.
T Consensus 157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 157 AENNGLLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44567889999999999999988776543
No 199
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=7.6e-08 Score=82.18 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=64.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCeEEEEeccCCccHHh---------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD--------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~iiVlNK~DLl~~~~--------- 164 (323)
+-++||+. ++.......+..+|++++|+|+.++.+..+ ..+.....+.|+++|+||+|+.+...
T Consensus 70 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 148 (194)
T 2atx_A 70 LYDTAGQE-DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK 148 (194)
T ss_dssp EECCCCSS-SSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTT
T ss_pred EEECCCCc-chhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhccccc
Confidence 44577772 233333455788999999999876533211 11222223789999999999976421
Q ss_pred -----HHHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHH
Q 020622 165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
..+..++....+. .++.+||++|.|++++.+.+.+
T Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 149 EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp CCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 1222333444565 7899999999999998877654
No 200
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.43 E-value=2.5e-07 Score=80.24 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=40.8
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeC----CcEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~----~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|.+... ....+.++.+...+..+ ..+.++||||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 56899999999999999999997652 33445555555555554 248999999974
No 201
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.43 E-value=1e-07 Score=79.01 Aligned_cols=95 Identities=16% Similarity=0.031 Sum_probs=61.9
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------h-CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------L-GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l-~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
++||+ .++.......+..+|++++|+|+.++.+.. .+..+ . .+.|+++|+||+|+.+..+ ..+..++
T Consensus 61 Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 137 (170)
T 1z08_A 61 DTAGQ-ERFHALGPIYYRDSNGAILVYDITDEDSFQ--KVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY 137 (170)
T ss_dssp ECCCC--------CCSSTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred ECCCc-HhhhhhHHHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 67887 334444445578999999999987643211 12222 1 2678999999999976422 2233344
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHH
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
....+..++.+||++|.|++++.+.+.+
T Consensus 138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 138 AESVGAKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp HHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 4556788999999999999998877654
No 202
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.43 E-value=2.3e-07 Score=76.63 Aligned_cols=100 Identities=15% Similarity=-0.043 Sum_probs=56.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|++++|+|..++.+..+ ..+..+. .+.|+++|+||+|+.+..+ ......
T Consensus 53 i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 131 (166)
T 3q72_A 53 VYDIWEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA 131 (166)
T ss_dssp EEECC----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH
T ss_pred EEECCCC-ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH
Confidence 3457887 4455555567899999999999876532211 1111221 2579999999999975432 122223
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.....+..++.+||++|.|++++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 132 CAVVFDCKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HHHHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence 344456889999999999999988776554
No 203
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.43 E-value=2.6e-07 Score=77.24 Aligned_cols=100 Identities=8% Similarity=-0.083 Sum_probs=59.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----CCCCeEEEEeccCCccHHh---HH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISMAD---RN 166 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-----~~k~~iiVlNK~DLl~~~~---~~ 166 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+.... .+.|+++|+||+|+.+... ..
T Consensus 62 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~ 140 (182)
T 1ky3_A 62 VWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140 (182)
T ss_dssp EECCC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH
T ss_pred EEECCCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH
Confidence 4467887 44555555667899999999998765432111 111221 3679999999999964321 22
Q ss_pred HHHHHHH-hhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 167 AWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 167 ~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
+..++.. ..+..++.+||++|.|++++.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 141 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp HHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 2222232 234678999999999999988876554
No 204
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.42 E-value=1.8e-06 Score=76.09 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=59.3
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHh-C---CCCeEEEEeccCCccHHhH----H-HHHHHHHhhC--ceE
Q 020622 114 LKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWL-G---NRKRILVLNREDMISMADR----N-AWATYFAKQG--TKV 179 (323)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~---~i~~~l-~---~k~~iiVlNK~DLl~~~~~----~-~~~~~~~~~g--~~v 179 (323)
+......+|++|+|+|+.++.+.... .+...+ . +.|+++|+||+|+.+..+. . ...+.....+ ..+
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 34456788999999999877554322 222222 2 6899999999999865321 1 2222333344 689
Q ss_pred EEecCcCCCcchhhhHHHHHhh
Q 020622 180 IFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+.+||++|.|++++.+.+.+..
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHH
Confidence 9999999999999988776544
No 205
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.42 E-value=3.5e-08 Score=86.42 Aligned_cols=100 Identities=11% Similarity=-0.060 Sum_probs=68.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHh
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~ 174 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|+||+|+.+.....+..++...
T Consensus 68 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 146 (221)
T 3gj0_A 68 VWDTAGQ-EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK 146 (221)
T ss_dssp EEEECSG-GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHH
T ss_pred EEeCCCh-HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHH
Confidence 4567887 3344445566789999999999986543221 112222237899999999999764332222333445
Q ss_pred hCceEEEecCcCCCcchhhhHHHHHh
Q 020622 175 QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.+..++.+||++|.|++++.+.+.+.
T Consensus 147 ~~~~~~~~Sa~~~~gi~~l~~~l~~~ 172 (221)
T 3gj0_A 147 KNLQYYDISAKSNYNFEKPFLWLARK 172 (221)
T ss_dssp HTCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 67889999999999999988776554
No 206
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=4.9e-07 Score=74.68 Aligned_cols=54 Identities=30% Similarity=0.394 Sum_probs=36.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCC---CceeeEEEEEeCC---cEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP---GVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p---gtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|.+.... ....| .+++. .+.... .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~--~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIPTVEDTYRQ--VISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC-SSCCCCSCEEEEE--EEEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccccEEE--EEEECCEEEEEEEEECCCch
Confidence 478999999999999999999975431 12222 22222 222222 47899999975
No 207
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.42 E-value=4.7e-07 Score=76.24 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=37.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee-EEEEEeCCc---EEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGKD---LEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~~~~~~~~~---~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+... .....|.++.. ...+..+.. +.++||||...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchh
Confidence 468999999999999999999997532 22222222222 223333332 55799999753
No 208
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.42 E-value=1.2e-07 Score=81.88 Aligned_cols=100 Identities=13% Similarity=0.048 Sum_probs=65.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH----HHHhCCCCeEEEEeccCCccHHhH--------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMADR-------- 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i----~~~l~~k~~iiVlNK~DLl~~~~~-------- 165 (323)
+-++||+ .++.......++.+|++++|+|+.++.+..+. .+ .....+.|+++|+||+|+.+....
T Consensus 77 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 155 (201)
T 2gco_A 77 LWDTAGQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMK 155 (201)
T ss_dssp EECCCCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTT
T ss_pred EEECCCc-hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccc
Confidence 4467887 33333334567899999999998764322111 12 222237899999999999865321
Q ss_pred ------HHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHHh
Q 020622 166 ------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 166 ------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.+..++....+. .++.+||++|.|+++|.+.+.+.
T Consensus 156 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 156 QEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 122233344555 78999999999999988876543
No 209
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.41 E-value=2.9e-07 Score=76.58 Aligned_cols=102 Identities=15% Similarity=-0.093 Sum_probs=60.6
Q ss_pred cccccchHHHHHHHH-HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh-----CCCCeEEEEeccCCccHHh--HHHHH
Q 020622 100 VQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l-~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+.....+.+ ...+..+|++++|+|..++.+.... .+..+. .+.|+++|+||+|+.+..+ ..+..
T Consensus 56 ~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~ 135 (175)
T 2nzj_A 56 VVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR 135 (175)
T ss_dssp EECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHH
T ss_pred EEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHH
Confidence 445788743212222 3446789999999998764322111 111111 2679999999999976422 12222
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.+....+..++.+||++|.|++++.+.+.+..
T Consensus 136 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 136 ACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp HHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 33345567899999999999999888765543
No 210
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.41 E-value=2.5e-07 Score=79.32 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=40.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..+|+++|.+|||||||+|+|.+.......+..+.+. ..+.. +..+.++||||..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETTEEEEEEECCCSG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECCEEEEEEECCCCH
Confidence 4579999999999999999999876544444555543 23333 3468899999985
No 211
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.41 E-value=1e-07 Score=82.36 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=61.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++ .+.|+++|+||+|+......++..+.+
T Consensus 73 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 151 (198)
T 1f6b_A 73 TFDLGGH-IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMF 151 (198)
T ss_dssp EEEECC-----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCc-HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHh
Confidence 4456887 333333345678999999999997653221 12233333 367999999999997532222233333
Q ss_pred Hh-----------------hCceEEEecCcCCCcchhhhHHHHH
Q 020622 173 AK-----------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 ~~-----------------~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.. .+..++.+||++|.|++++.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 152 GLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 21 2356899999999999998877643
No 212
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.41 E-value=1.2e-07 Score=80.94 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+. .+.|+++|+||+|+.+..+ ..+..++
T Consensus 74 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 152 (191)
T 2a5j_A 74 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF 152 (191)
T ss_dssp EECCTTG-GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH
Confidence 4467887 3344445567889999999999876432221 1111111 2678999999999975322 2233334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..+.+..++.+||++|.|++++.+.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 153 AREHGLIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp HHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999988776543
No 213
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.41 E-value=4.9e-07 Score=76.87 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=63.7
Q ss_pred cccccchHHHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCeEEEEeccCCccHHh--HHHHH
Q 020622 100 VQWYPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~-~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~ 169 (323)
+-++||+ .++. ......++.+|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.+..+ .....
T Consensus 73 l~Dt~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 151 (189)
T 1z06_A 73 LWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ 151 (189)
T ss_dssp EEECCCS-HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEECCCc-hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH
Confidence 4568998 4454 555677899999999999876432211 1222332 2679999999999976432 12222
Q ss_pred HHHHhhCceEEEecCcCC---CcchhhhHHH
Q 020622 170 TYFAKQGTKVIFSNGQLG---MGTMKLSRLA 197 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g---~gi~~L~~~l 197 (323)
++....+..++.+||+++ .|++++.+.+
T Consensus 152 ~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l 182 (189)
T 1z06_A 152 KFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182 (189)
T ss_dssp HHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCcCCcccCHHHHHHHH
Confidence 333456678999999999 6666655543
No 214
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.41 E-value=2.9e-07 Score=76.98 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=39.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeC----CcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~----~~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+.... ....|.++.+ ...+..+ ..+.++||||...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 4688999999999999999999975432 1112333222 3334443 3588999999753
No 215
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.41 E-value=1.7e-07 Score=80.97 Aligned_cols=100 Identities=9% Similarity=-0.040 Sum_probs=68.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---h-CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~---l-~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+..+ . .+.|+++|+||+|+.+..+ ..+..++
T Consensus 78 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 156 (200)
T 2o52_A 78 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF 156 (200)
T ss_dssp EECCTTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEcCCCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence 5568997 44555556778999999999998765432111 11111 1 2678999999999975432 2333444
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+.+.
T Consensus 157 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 157 AQENELMFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 55567889999999999999988776543
No 216
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.40 E-value=5e-07 Score=75.43 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=40.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|++... ....+.||... ..+..+. .+.++||||...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence 357899999999999999999997642 34445555442 2233332 577899999753
No 217
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.40 E-value=1.8e-07 Score=80.84 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=36.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..+|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcH
Confidence 56899999999999999999997654444444555533 3333 3468899999964
No 218
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.40 E-value=7.7e-08 Score=82.27 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=66.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH----HHHHhCCCCeEEEEeccCCccHH----hHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL----MDQWLGNRKRILVLNREDMISMA----DRNAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~----i~~~l~~k~~iiVlNK~DLl~~~----~~~~~~ 169 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ .. +.....+.|+++|+||+|+.+.. ...+..
T Consensus 75 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 153 (194)
T 3reg_A 75 LWDTAGQ-EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGD 153 (194)
T ss_dssp EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHH
T ss_pred EEECCCc-HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHH
Confidence 4567886 3344444456789999999999876543222 11 22222368999999999997531 122333
Q ss_pred HHHHhhCce-EEEecCcCCCcchhhhHHHHHh
Q 020622 170 TYFAKQGTK-VIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 170 ~~~~~~g~~-vi~iSa~~g~gi~~L~~~l~~l 200 (323)
++....+.. ++.+||++|.|++++.+.+.+.
T Consensus 154 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 154 DLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp HHHHHHTCSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEeecCCCCCHHHHHHHHHHH
Confidence 344455665 9999999999999988776554
No 219
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.40 E-value=8.8e-08 Score=81.57 Aligned_cols=100 Identities=10% Similarity=-0.044 Sum_probs=65.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+..+ ..+..++
T Consensus 75 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (189)
T 2gf9_A 75 IWDTAGQ-ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL 153 (189)
T ss_dssp EEECCSC-CSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEeCCCc-HHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence 4456776 22333344567899999999998765322111 111111 2679999999999976432 2233334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..+.+..++.+||++|.|++++.+.+.+.
T Consensus 154 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 154 ADDLGFEFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45567889999999999999988876554
No 220
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.76 E-value=3.6e-08 Score=85.19 Aligned_cols=98 Identities=15% Similarity=-0.003 Sum_probs=65.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhC----CCCeEEEEeccCCccHHhH--------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMADR-------- 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l~----~k~~iiVlNK~DLl~~~~~-------- 165 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+...+. +.|+++|+||+|+.+....
T Consensus 82 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 160 (204)
T 3th5_A 82 LWDTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160 (204)
Confidence 4478887 45555556678899999999998776543332 2222222 6799999999999764311
Q ss_pred ------HHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHH
Q 020622 166 ------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 166 ------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~ 198 (323)
.+..++.+..+. .++.+||++|.|++++.+.+.
T Consensus 161 ~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 111222233344 688999999999998877654
No 221
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.39 E-value=4.1e-07 Score=78.46 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=40.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|+++.+ ...+..+. .+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 357899999999999999999997653 23334444444 33444443 58899999964
No 222
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.39 E-value=2.4e-07 Score=77.51 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=35.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCce--eeEEEEEeC----CcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFG----KDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT--~~~~~~~~~----~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++.... ....|.++ .....+..+ ..+.++||||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 3678999999999999999999976532 22223333 333333333 257899999953
No 223
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.39 E-value=2.6e-07 Score=76.19 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=37.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|.+.... ...|.+......+.. +..+.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCCCSSCCEEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccCcCceeEEEEEECCEEEEEEEcCCCh
Confidence 36999999999999999999875532 223322222222333 4568899999984
No 224
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.39 E-value=4.7e-07 Score=76.36 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=38.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE---EEEEeCC------------cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFGK------------DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~---~~~~~~~------------~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 468999999999999999999997543 222223222222 2333321 58899999974
No 225
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.39 E-value=3.4e-07 Score=79.01 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=36.2
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020622 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
...++|+++|.+|||||||+|+|++... .....|.++.+ ...+..+. .+.|+||||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKF-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 3468999999999999999999997643 22333443333 33444443 68899999964
No 226
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.38 E-value=4.1e-07 Score=77.49 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=38.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.... ....|.+..+...+.. +..+.|+||||..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGFNMRKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEETTEEEEEEEECCSH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCceeEEEEEeCCEEEEEEECCCCH
Confidence 4689999999999999999999976532 1222322222222332 3468899999974
No 227
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.38 E-value=5e-07 Score=75.73 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=38.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.......+..|.+. ...+.++. .+.++||||..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCc
Confidence 35789999999999999999999765433233333222 22333332 46789999974
No 228
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.38 E-value=2.6e-07 Score=90.45 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=42.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcccc------------------------------ccCCCCceeeEEEEEe---CC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~------------------------------v~~~pgtT~~~~~~~~---~~ 262 (323)
..++|+++|.+|+|||||+|+|+...... ....+|+|.+.....+ +.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 35789999999999999999996542211 1123689998765444 45
Q ss_pred cEEEEecCCcc
Q 020622 263 DLEFLDSPGII 273 (323)
Q Consensus 263 ~~~liDTPGi~ 273 (323)
.+.|+||||..
T Consensus 96 ~~~iiDTPGh~ 106 (439)
T 3j2k_7 96 HFTILDAPGHK 106 (439)
T ss_pred EEEEEECCChH
Confidence 78999999964
No 229
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.38 E-value=6.3e-07 Score=76.74 Aligned_cols=57 Identities=28% Similarity=0.433 Sum_probs=38.1
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeCC---cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+...... ..|.++... ..+.++. .+.++||||...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 57899999999999999999997653221 122222222 2233332 478999999864
No 230
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.37 E-value=5.8e-07 Score=77.94 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=60.7
Q ss_pred cccccchHHHHHH-HHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHh-------CCCCeEEEEeccCCccHHhHHHH
Q 020622 100 VQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWL-------GNRKRILVLNREDMISMADRNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~-~l~~~i~~aDlIl~VvDar~~~~~~~~---~i~~~l-------~~k~~iiVlNK~DLl~~~~~~~~ 168 (323)
+-++||| .++.. .....+..+|++|+|+|+......... .+...+ .+.|+++|+||+|+.+.......
T Consensus 58 i~Dt~G~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 136 (214)
T 2fh5_B 58 LIDLPGH-ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLI 136 (214)
T ss_dssp EEECCCC-HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred EEECCCC-hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHH
Confidence 5568999 44555 344568999999999998752111111 111111 15799999999999765332222
Q ss_pred HHH----HH---------------------------------hh--CceEEEecCcCC------CcchhhhHHHHH
Q 020622 169 ATY----FA---------------------------------KQ--GTKVIFSNGQLG------MGTMKLSRLAKA 199 (323)
Q Consensus 169 ~~~----~~---------------------------------~~--g~~vi~iSa~~g------~gi~~L~~~l~~ 199 (323)
.+. +. .. +..++.+||++| .|++++.+.+.+
T Consensus 137 ~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 137 QQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 211 11 00 345888999999 999998887654
No 231
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.37 E-value=2.3e-07 Score=80.71 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh-CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l-~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+... .. +.... .+.|+++|+||+|+.+..+ ..+..++
T Consensus 79 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 157 (201)
T 2ew1_A 79 IWDTAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF 157 (201)
T ss_dssp EEEECCS-GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 4467887 4455555667899999999999876543211 11 11111 2578999999999975422 1222233
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+.+.
T Consensus 158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 158 SEAQDMYYLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44556789999999999999988776543
No 232
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.37 E-value=1.2e-07 Score=81.45 Aligned_cols=101 Identities=12% Similarity=-0.057 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--H----HHHHhCCCCeEEEEeccCCccHHh---------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDMISMAD--------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~----i~~~l~~k~~iiVlNK~DLl~~~~--------- 164 (323)
+-++||+. ++.......+..+|++|+|+|+.++.+..+. . +.....+.|+++|+||+|+.+...
T Consensus 72 i~Dt~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 150 (201)
T 2q3h_A 72 LCDTAGQD-EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCK 150 (201)
T ss_dssp EEECCCST-TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred EEECCCCH-HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccc
Confidence 44567772 2222233457889999999998765432221 1 222223789999999999975321
Q ss_pred -----HHHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHHhh
Q 020622 165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
..+...+....+. .++.+||++|.|++++.+.+.+..
T Consensus 151 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 151 EKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 1122233334565 899999999999999887765543
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.37 E-value=8.7e-08 Score=82.20 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=63.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~ 172 (323)
+-++||+. ++.......+..+|++++|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+....++..+.+
T Consensus 71 i~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 149 (190)
T 1m2o_B 71 TFDLGGHI-QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSAL 149 (190)
T ss_dssp EEECCCSG-GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCCH-HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHh
Confidence 34567773 233333345689999999999986543211 1233332 367999999999997632233333333
Q ss_pred Hh------------hCceEEEecCcCCCcchhhhHHHH
Q 020622 173 AK------------QGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 173 ~~------------~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
.. .+..++.+||++|.|++++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 150 GLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp TCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred CCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 21 235689999999999999887654
No 234
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.37 E-value=2.3e-07 Score=87.98 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=66.7
Q ss_pred cccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC-----CCCcH---HHHHH---hCCCCeEEEEeccCCccH
Q 020622 100 VQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL-----STTHP---LMDQW---LGNRKRILVLNREDMISM 162 (323)
Q Consensus 100 i~~~PGh~~k------~~~~l~~~i~~aDlIl~VvDar~~~-----~~~~~---~i~~~---l~~k~~iiVlNK~DLl~~ 162 (323)
+.++||+... ....+.+.++++|++|+|+|+.... ...+. ++..+ +.++|+++|+||+|+.+.
T Consensus 210 l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 210 MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp EEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred EecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 6778997432 3355566788999999999996521 11111 12222 136899999999999875
Q ss_pred Hh-HHHHHHHHHhhC--ceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 163 AD-RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 163 ~~-~~~~~~~~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.+ .+++.+ .+. ..++++||+++.|+++|++.+.+...
T Consensus 290 ~e~~~~l~~---~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 290 AENLEAFKE---KLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp HHHHHHHHH---HCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHH---HhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 43 222222 233 56899999999999999888766543
No 235
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.36 E-value=4.8e-07 Score=77.59 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=36.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.. .....+.||.+.. .+..+. .+.++||||.-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 46789999999999999999999765 2344445555432 233333 46699999985
No 236
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.36 E-value=1.3e-07 Score=82.07 Aligned_cols=99 Identities=15% Similarity=-0.020 Sum_probs=65.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccHHhH--------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR-------- 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~~~~-------- 165 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+....
T Consensus 82 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 160 (204)
T 4gzl_A 82 LWDTAGL-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160 (204)
T ss_dssp EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred EEECCCc-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccc
Confidence 4567887 33444444567899999999999865433221 122222 37899999999999765431
Q ss_pred ------HHHHHHHHhhC-ceEEEecCcCCCcchhhhHHHHH
Q 020622 166 ------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 166 ------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.+...+....+ ..++.+||++|.|++++.+.+.+
T Consensus 161 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 12222333445 35899999999999998877654
No 237
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.35 E-value=4.6e-07 Score=79.54 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=39.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccc-cCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+|+|.+|||||||+|+|.+...... .+..|++.....+..+. .+.|+||||..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 357899999999999999999997653221 12223333334444544 68899999964
No 238
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=7.3e-07 Score=76.34 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=67.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+.. .......+..+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|+.+..+ ..+..+
T Consensus 80 l~Dt~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 157 (196)
T 2atv_A 80 ILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK 157 (196)
T ss_dssp EEECCCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH
Confidence 456788854 44455678899999999999765432111 122222 2679999999999976422 222333
Q ss_pred HHHhhCceEEEecCcCCC-cchhhhHHHHHh
Q 020622 171 YFAKQGTKVIFSNGQLGM-GTMKLSRLAKAL 200 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~-gi~~L~~~l~~l 200 (323)
+..+.+..++.+||++|. |++++.+.+.+.
T Consensus 158 ~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 158 LATELACAFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp HHHHHTSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred HHHHhCCeEEEECCCcCCcCHHHHHHHHHHH
Confidence 344557889999999999 999988776543
No 239
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.35 E-value=8.2e-07 Score=89.28 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=59.2
Q ss_pred CCcchhhHhhhcccccCcceeeeecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 020622 71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~~~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (323)
.+.|-...|+|.++++......|...-. -+.++||| ..+..++...+.-+|.+|+|+||..+...--..+.+...
T Consensus 73 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~ 151 (548)
T 3vqt_A 73 ATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR 151 (548)
T ss_dssp ---------------CTTTEEEEEETTEEEEEECCCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT
T ss_pred cccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh
Confidence 4667777799999998888666654433 37899999 679999999999999999999999887655444444433
Q ss_pred CCCeEEEEeccCCcc
Q 020622 147 NRKRILVLNREDMIS 161 (323)
Q Consensus 147 ~k~~iiVlNK~DLl~ 161 (323)
+.|+++++||+|...
T Consensus 152 ~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 152 ATPVMTFVNKMDREA 166 (548)
T ss_dssp TCCEEEEEECTTSCC
T ss_pred CCceEEEEecccchh
Confidence 889999999999753
No 240
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.35 E-value=4.4e-07 Score=92.88 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=71.8
Q ss_pred CCcchhhHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 020622 71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (323)
.+.|-...|+|.++++......|...-.. +.++||| ..+..++...+.-+|.+|+||||..+....-..+.+...
T Consensus 40 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~ 118 (638)
T 3j25_A 40 TRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 118 (638)
T ss_dssp CSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH
T ss_pred cccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc
Confidence 45677777999999998876666544333 7899999 679999999999999999999999988765555554443
Q ss_pred CCCeEEEEeccCCcc
Q 020622 147 NRKRILVLNREDMIS 161 (323)
Q Consensus 147 ~k~~iiVlNK~DLl~ 161 (323)
+.|+++++||+|...
T Consensus 119 ~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 119 GIPTIFFINKIDQNG 133 (638)
T ss_dssp TCSCEECCEECCSSS
T ss_pred CCCeEEEEecccccc
Confidence 789999999999753
No 241
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.35 E-value=4.7e-07 Score=74.95 Aligned_cols=57 Identities=19% Similarity=0.057 Sum_probs=33.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+........ +.+|.+. ..+..+. .+.++||||...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 3689999999999999999998654332222 2223332 2233333 467999999853
No 242
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=7.5e-07 Score=75.86 Aligned_cols=56 Identities=29% Similarity=0.325 Sum_probs=36.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCC--CceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p--gtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.... ....| +.+.. ..+..+. .+.|+||||..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR-DTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC-CTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGG
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC-CcccCcccccee-EEEEECCEEEEEEEEeCCChH
Confidence 3578999999999999999999975432 11112 21111 1222332 57899999975
No 243
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.35 E-value=4e-07 Score=78.37 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=37.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee-E-EEEEe---CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~-~-~~~~~---~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.... ...+.|+.. . ..+.. ...+.|+||||..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 83 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD 83 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc
Confidence 4688999999999999999999976543 222233332 1 12222 2246899999974
No 244
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.35 E-value=8.3e-07 Score=92.21 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=39.4
Q ss_pred ecCcCCCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCccccccC
Q 020622 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 247 (323)
Q Consensus 182 iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~ 247 (323)
.++-.+.|+++|...+.++......... +..-...+|+|+|.+|+|||||+|+|++....+++.
T Consensus 18 ~~~~~~~~~~~li~~inkl~d~l~~lg~--~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~ 81 (772)
T 3zvr_A 18 GSHMGNRGMEDLIPLVNRLQDAFSAIGQ--NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS 81 (772)
T ss_dssp -------CGGGHHHHHHHHHHHHHTTTC--CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcCc--cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCC
Confidence 4556677888888887776554332111 111234589999999999999999999976544443
No 245
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=6.1e-07 Score=77.97 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=40.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+.++. .+.++||||..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 467899999999999999999997543 333334444443 2344443 57899999963
No 246
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.34 E-value=2.7e-07 Score=79.30 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=62.5
Q ss_pred cccccchHHHHHHHH---HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------CCCCeEEEEeccCCccHHhH----
Q 020622 100 VQWYPGHIAKTEKEL---KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADR---- 165 (323)
Q Consensus 100 i~~~PGh~~k~~~~l---~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~~k~~iiVlNK~DLl~~~~~---- 165 (323)
+-++||+ .++.+.. ...+..+|++|+|+|+.+........+..++ .+.|+++|.||+|+.+.+..
T Consensus 73 i~Dt~G~-~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 151 (196)
T 3llu_A 73 IWDFPGQ-MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQ 151 (196)
T ss_dssp EEECCSS-CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHH
T ss_pred EEECCCC-HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHH
Confidence 4467887 3333444 5678899999999999875211122232322 26799999999999874321
Q ss_pred HH----HHHHHH-----hhCceEEEecCcCCCcchhhhHHHH
Q 020622 166 NA----WATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (323)
Q Consensus 166 ~~----~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (323)
.. ..+.+. ..+..++.+||++ .|++++.+.+.
T Consensus 152 ~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~ 192 (196)
T 3llu_A 152 RDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVV 192 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHH
Confidence 11 112222 2356789999999 99988876654
No 247
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.34 E-value=4.1e-07 Score=75.95 Aligned_cols=100 Identities=6% Similarity=-0.096 Sum_probs=65.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh-----CCCCeEEEEeccCCccHHh-HHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL-----GNRKRILVLNREDMISMAD-RNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l-----~~k~~iiVlNK~DLl~~~~-~~~~ 168 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+.... .+.|+++|+||+|+.+... .++.
T Consensus 60 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~ 138 (177)
T 1wms_A 60 IWDTAGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEA 138 (177)
T ss_dssp EEECCCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHH
T ss_pred EEeCCCc-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHH
Confidence 4467887 3455555567789999999999876543211 1122222 3569999999999974321 2222
Q ss_pred HHHHH-hhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 169 ATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 169 ~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
.++.. ..+..++.+||++|.|++++.+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 139 QAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171 (177)
T ss_dssp HHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 33333 234779999999999999887776543
No 248
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.34 E-value=2.2e-07 Score=79.74 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=18.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCcee-e--EEEEEeCC-----cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-V--LKWVRFGK-----DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~-~--~~~~~~~~-----~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+...........|+. + ...+..+. .+.|+||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 35799999999999999999999763222333333332 2 23344443 48899999973
No 249
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=1.8e-07 Score=79.90 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=41.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccc-cccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.... ...+..|++.....+.... .+.|+||||..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 4689999999999999999999975422 2223345666655555432 48899999953
No 250
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=5.9e-07 Score=77.78 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=36.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeCC---cEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|+|.+..... ...|.++... ..+..+. .+.|+||||..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcH
Confidence 5689999999999999999999765321 2223222222 2234443 57899999974
No 251
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.32 E-value=3.6e-07 Score=77.12 Aligned_cols=83 Identities=14% Similarity=0.059 Sum_probs=58.5
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCC
Q 020622 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
....+..+|++++|+|+.++.+..+..+...+ .+.|+++|+||+|+.+... ++....+..++.+||++|.
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCT
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCC
Confidence 44568999999999999887765443332222 1579999999999854211 0111234678999999999
Q ss_pred cchhhhHHHHHhh
Q 020622 189 GTMKLSRLAKALA 201 (323)
Q Consensus 189 gi~~L~~~l~~l~ 201 (323)
|+++|.+.+.+..
T Consensus 152 gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 152 GVDVLRNHLKQSM 164 (172)
T ss_dssp THHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHh
Confidence 9999988776543
No 252
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.32 E-value=2.1e-07 Score=80.04 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=40.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|++... .....|++|.+ ...+..+. .+.|+||||..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCC-CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999997543 22323444433 34444443 57899999964
No 253
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.32 E-value=7.4e-07 Score=77.18 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=37.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCc--EEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKD--LEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~--~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|++.+... ......||.+... +.. +.. +.++||||.-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence 368899999999999999999996543 3344455554322 222 333 4499999974
No 254
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.31 E-value=1.4e-07 Score=85.76 Aligned_cols=80 Identities=19% Similarity=0.106 Sum_probs=57.5
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHH-HHHHhhCceEEEecCcCCCcchhhhH
Q 020622 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA-TYFAKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~-~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
..+|++|+|+|+... ..+..+..++. +.|+++|+||+|+.+........ .....+|.+++++||++|.|+++|++
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 789999999999762 22233444443 68999999999997654211111 12234678999999999999999988
Q ss_pred HHHHh
Q 020622 196 LAKAL 200 (323)
Q Consensus 196 ~l~~l 200 (323)
.+.+.
T Consensus 160 ~i~~~ 164 (256)
T 3iby_A 160 SLLHC 164 (256)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 87665
No 255
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.31 E-value=8.2e-07 Score=77.49 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=32.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.... .....|+.+. ..+..+. .+.|+||||..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 3689999999999999999999975432 2222333322 2233333 47899999964
No 256
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.31 E-value=1.7e-07 Score=80.96 Aligned_cols=101 Identities=9% Similarity=-0.049 Sum_probs=65.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---h-CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~---l-~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+..+.+..+. .+..+ . .+.|+++|+||+|+.+..+ .....++
T Consensus 61 l~Dt~G~-~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 139 (206)
T 2bcg_Y 61 IWDTAGQ-ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139 (206)
T ss_dssp EECCTTT-TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEeCCCh-HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 4456776 23333344567899999999998765432111 11111 1 2578999999999976422 2222333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
....+..++++||++|.|++++.+.+.+..
T Consensus 140 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 140 ADANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp HHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445677899999999999999888766543
No 257
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.31 E-value=9.5e-07 Score=75.32 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=37.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+... ......|+.+. ..+.++. .+.|+||||...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 468999999999999999999997652 23334444432 2233332 467899999854
No 258
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.30 E-value=7.9e-07 Score=76.63 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=39.9
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeCC---cEEEEecCCcc
Q 020622 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (323)
...++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+..+. .+.++||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 34678999999999999999999976532 22234433332 2334443 57899999963
No 259
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=2.5e-07 Score=80.24 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=64.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH----hCCCCeEEEEeccCCccHHhHHH------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISMADRNA------ 167 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~----l~~k~~iiVlNK~DLl~~~~~~~------ 167 (323)
+-++||+. ++.......+..+|++|+|+|+..+.+..+ ..+... ..+.|+++|+||+|+.+.....+
T Consensus 77 i~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 155 (207)
T 2fv8_A 77 LWDTAGQE-DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMK 155 (207)
T ss_dssp EEECTTCT-TCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTT
T ss_pred EEECCCcH-HHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcc
Confidence 44678873 233333455688999999999876432111 112222 23789999999999986532221
Q ss_pred --------HHHHHHhhCc-eEEEecCcCCCcchhhhHHHHHh
Q 020622 168 --------WATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 168 --------~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..++....+. .++.+||++|.|+++|.+.+.+.
T Consensus 156 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 156 QEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1122233444 78999999999999988876654
No 260
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.30 E-value=2.1e-07 Score=78.39 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=24.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.. ......|+++.+.. .+.++. .+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 35789999999999999999999653 23333455555432 344433 58899999964
No 261
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.29 E-value=4e-06 Score=70.60 Aligned_cols=81 Identities=21% Similarity=0.138 Sum_probs=52.1
Q ss_pred HhhcCeEEEEEeCCCCC-----------CCCcHHHHHHh--CCCCeEEEEeccCCccHH--hHHHHHHHHHhhCc-----
Q 020622 118 LKLMDVVIEVRDARIPL-----------STTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQGT----- 177 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~-----------~~~~~~i~~~l--~~k~~iiVlNK~DLl~~~--~~~~~~~~~~~~g~----- 177 (323)
+..+++++.|+|+.... ...+..+...+ .+.|+++|+||+|+.+.. +.+++. .+.+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~ 156 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLA---EKFEVPLSEI 156 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHH---HHHTCCGGGH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHH---HHhhhhhhcc
Confidence 45577888888875321 11112233333 278999999999998753 222222 23342
Q ss_pred --eEEEecCcCCCcchhhhHHHHHhh
Q 020622 178 --KVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 178 --~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.++.+||++|.|++++.+.+.+..
T Consensus 157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 157 DKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 479999999999999888766543
No 262
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.29 E-value=4.1e-07 Score=78.44 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=39.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|++|.+. ..+.++. .+.++||||..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 357899999999999999999986432 234456655543 2233433 36678999985
No 263
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.29 E-value=2.7e-07 Score=93.62 Aligned_cols=102 Identities=19% Similarity=0.117 Sum_probs=67.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHH--------------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA-------------- 163 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~-------------- 163 (323)
+-++||| ..+.......+..+|++|+|+|+.++..........++. +.|+++|+||+|+.+..
T Consensus 74 liDTPGh-e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~ 152 (594)
T 1g7s_A 74 FIDTPGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (594)
T ss_dssp EECCCTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHH
Confidence 4578998 334433344567799999999999876543333333333 78999999999997420
Q ss_pred ---h--------HHHHHHHHHhhC---------------ceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 164 ---D--------RNAWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 164 ---~--------~~~~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
. ..+..+.+.+.+ ..++++||++|.|+.+|++.+..+.+
T Consensus 153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 111222233222 26899999999999999988876554
No 264
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.29 E-value=2.3e-07 Score=91.47 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=66.0
Q ss_pred cccccchHHHHHH--------HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHH
Q 020622 100 VQWYPGHIAKTEK--------ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~--------~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~ 171 (323)
+-++||+. +... .....+..+|++|+|+|+..+.+..+..+...+..+|+++|+||+|+.+....... +.
T Consensus 276 liDT~G~~-~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~-~~ 353 (462)
T 3geh_A 276 VLDTAGIR-ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSL-EY 353 (462)
T ss_dssp ECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTC-CC
T ss_pred EEECCccc-cchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHH-HH
Confidence 55678873 2222 22334688999999999998877766777777778999999999999876542210 00
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+. .+..++.+||++|.|+++|.+.+.+..
T Consensus 354 ~~-~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 354 PE-NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CT-TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hc-cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 10 235789999999999999988876654
No 265
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.28 E-value=7.9e-07 Score=76.81 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=36.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|.++.+ ...+.++. .+.|+||||..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999987643 22222322233 23344443 68899999974
No 266
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.7e-07 Score=94.02 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=42.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccC------------------------------CCCceeeEEEEEe---CC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------------------------------RPGVTRVLKWVRF---GK 262 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~------------------------------~pgtT~~~~~~~~---~~ 262 (323)
..++|+++|.+|+|||||+|+|++........ .+|+|.+.....+ +.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 46899999999999999999998653322111 2688888543332 45
Q ss_pred cEEEEecCCcc
Q 020622 263 DLEFLDSPGII 273 (323)
Q Consensus 263 ~~~liDTPGi~ 273 (323)
.+.|+||||..
T Consensus 246 ~~~iiDTPG~e 256 (611)
T 3izq_1 246 NFTIVDAPGHR 256 (611)
T ss_dssp EEEEEECCSSS
T ss_pred eEEEEECCCCc
Confidence 78999999973
No 267
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.27 E-value=2.7e-08 Score=99.73 Aligned_cols=134 Identities=19% Similarity=0.141 Sum_probs=84.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHh--HHHHHHHH---
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYF--- 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~--~~~~~~~~--- 172 (323)
+-++||| ..+...+...+..+|++|+|+|+.++......+....+. +.|+++|+||+|+.+... .......+
T Consensus 56 ~iDTPGh-e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~ 134 (537)
T 3izy_P 56 FLDTPGH-AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVV 134 (537)
T ss_dssp CEECSSS-CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSC
T ss_pred EEECCCh-HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhh
Confidence 5578998 445555556678899999999999876554444333332 789999999999975321 11111111
Q ss_pred -Hhh--CceEEEecCcCCCcchhhhHHHHHhhhhhhhhhccCC------------CCccceEeeeecCCCCChhhHH
Q 020622 173 -AKQ--GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKG------------LLPRAVRAGIVGYPNVGKSSLI 234 (323)
Q Consensus 173 -~~~--g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~------------~~~~~~~v~ivG~pNvGKSSLi 234 (323)
... ...++++||++|.|+++|++.+..+............ ....++..+.|+..+++|+..+
T Consensus 135 ~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 135 CEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp CCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred HHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 111 1468899999999999999888776542221111000 0112455677888888887765
No 268
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.27 E-value=1.5e-07 Score=80.87 Aligned_cols=101 Identities=10% Similarity=-0.033 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh-----CCCCeEEEEeccCCccHHh-HHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL-----GNRKRILVLNREDMISMAD-RNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l-----~~k~~iiVlNK~DLl~~~~-~~~~ 168 (323)
+-++||+. ++.......+..+|++|+|+|+.++.+..+ .. +.... .+.|+++|+||+|+.+... ....
T Consensus 61 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 139 (207)
T 1vg8_A 61 IWDTAGQE-RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRA 139 (207)
T ss_dssp EEEECSSG-GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHH
T ss_pred EEeCCCcH-HHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHH
Confidence 34567762 233333355688999999999976543211 11 12222 3679999999999974322 2222
Q ss_pred HHHHH-hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 169 ATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 169 ~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.++.. ..+..++.+||++|.|++++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp HHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 23333 3457899999999999999988776543
No 269
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.26 E-value=3.4e-07 Score=79.70 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=39.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccc--cCCCCceeeEEEEEeCCcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v--~~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+...... +..|+++.+. ....+.++||||...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHH
Confidence 356899999999999999999997653221 2334444332 345788999999964
No 270
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.26 E-value=5.2e-07 Score=77.58 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=35.9
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|++.+.....++..+.++.+. ..+.++. .+.++||+|.-
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence 578999999999999999999964332233333333332 2334433 35689999964
No 271
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.26 E-value=1.3e-06 Score=73.37 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=37.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... ......|+.+. ..+..+. .+.++||||..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 357899999999999999999996542 22222333322 1223322 35699999984
No 272
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.7e-07 Score=82.28 Aligned_cols=100 Identities=10% Similarity=-0.054 Sum_probs=62.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+..+. .+.|+++|+||+|+.+..+ ..+..++
T Consensus 66 i~Dt~G~-~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 144 (223)
T 3cpj_B 66 IWDTAGQ-ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTF 144 (223)
T ss_dssp EECCTTT-TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHH
T ss_pred EEECCCc-cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 4457887 33333344557899999999998765432211 111111 1578999999999975422 2233334
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 145 AQENQLLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp HHHTTCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44567889999999999999988776554
No 273
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.26 E-value=6.9e-07 Score=76.64 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=35.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe-CCcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+.......+..| .....+.. +..+.++||||...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEETTEEEEEEECC----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEECCEEEEEEECCCCHh
Confidence 35789999999999999999998765432222112 11222333 34688999999853
No 274
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.26 E-value=3.7e-07 Score=90.19 Aligned_cols=117 Identities=11% Similarity=-0.032 Sum_probs=74.6
Q ss_pred ccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCeEEEEe
Q 020622 85 DLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLN 155 (323)
Q Consensus 85 ~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~iiVlN 155 (323)
+++.++..+...-.. +-++||+ .++.......++.+|++|+|+|+.++.+.. ...+..++. ++|+++|+|
T Consensus 353 T~~~~~~~~~~~~~~~~l~Dt~G~-~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~N 431 (497)
T 3lvq_E 353 TVGFNVETVTYKNVKFNVWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 431 (497)
T ss_dssp CSSEEEEEEESSSCEEEEEEECCC-GGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred ccceeEEEEEeCCEEEEEEECCCc-HHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEE
Confidence 455555444433222 5567886 444444556789999999999998653221 122333332 689999999
Q ss_pred ccCCccHHhHHHHHHHHHh-----hCceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 156 REDMISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 156 K~DLl~~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
|+|+.+.....+..+.+.. .+..++++||++|.|++++++.|.+...
T Consensus 432 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 432 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp CCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred CCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999765333333322211 1245899999999999999888766543
No 275
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.26 E-value=2.7e-07 Score=80.76 Aligned_cols=101 Identities=11% Similarity=0.008 Sum_probs=65.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH----HHHHhCCCCeEEEEeccCCccH-----------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL----MDQWLGNRKRILVLNREDMISM----------- 162 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~----i~~~l~~k~~iiVlNK~DLl~~----------- 162 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ .. +.....+.|+++|.||+|+.+.
T Consensus 79 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 157 (214)
T 3q3j_B 79 LWDTSGS-PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQK 157 (214)
T ss_dssp EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTT
T ss_pred EEECCCC-HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccc
Confidence 3456776 3333344455789999999999987543222 11 1122236799999999999752
Q ss_pred ---HhHHHHHHHHHhhCc-eEEEecCcCCCc-chhhhHHHHHhh
Q 020622 163 ---ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKALA 201 (323)
Q Consensus 163 ---~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~l~~l~ 201 (323)
....+..++....+. .++.+||++|.| ++++.+.+.+..
T Consensus 158 ~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 158 QAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 111222333445566 899999999998 999888766543
No 276
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.25 E-value=1.9e-07 Score=94.80 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=29.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccc------------------------------cCCCCceeeEEEEEe---CC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v------------------------------~~~pgtT~~~~~~~~---~~ 262 (323)
..++|+++|.+|+|||||+|+|+....... ...+|+|++.....+ +.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 467899999999999999999974321111 125689988655443 35
Q ss_pred cEEEEecCCc
Q 020622 263 DLEFLDSPGI 272 (323)
Q Consensus 263 ~~~liDTPGi 272 (323)
.+.|+||||.
T Consensus 256 ~i~iiDTPGh 265 (592)
T 3mca_A 256 IYEIGDAPGH 265 (592)
T ss_dssp ---CCEEESS
T ss_pred EEEEEECCCh
Confidence 7889999995
No 277
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.25 E-value=9.8e-07 Score=74.94 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=34.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCcccccc-CCCCceeeEEEEEe--------CCcEEEEecCCcc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRF--------GKDLEFLDSPGII 273 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~-~~pgtT~~~~~~~~--------~~~~~liDTPGi~ 273 (323)
++|+++|.+|||||||+|+|.+......+ ..|.+..+.....+ ...+.++||||..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 57999999999999999999985322222 22333334322211 2357899999974
No 278
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.24 E-value=9.4e-07 Score=75.39 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=37.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC-C--cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-~--~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... ......|+... ..+..+ . .+.++||||..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999997653 22222333222 122332 2 35899999963
No 279
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.24 E-value=6.8e-07 Score=87.13 Aligned_cols=120 Identities=12% Similarity=0.083 Sum_probs=76.5
Q ss_pred hhhcccccCcceeeeecccc-c--cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020622 79 EECDWADLDADLYYWTKSLR-P--VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 79 e~e~~~~~~~~~~~~~~~l~-~--i~~~PGh~~------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.....+.+..+..+...-. + +-++|||.. ...+.....+..+|++|+|+|+ ........+..++. +
T Consensus 63 ~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~ 140 (423)
T 3qq5_A 63 SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEME 140 (423)
T ss_dssp -------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTT
T ss_pred CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcC
Confidence 34455566665555443322 2 667899842 1234466778899999999998 33333334444443 7
Q ss_pred CCeEEEEeccCCccHHhHHHHHHHHH-hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 148 RKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 148 k~~iiVlNK~DLl~~~~~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
.|+++|+||+|+.+.... +..+.+. ..+..++++||++|.|+++|++.+.+..
T Consensus 141 ~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 141 IPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp CCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 899999999999866543 2223332 3467889999999999999998887665
No 280
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.24 E-value=4.1e-07 Score=89.92 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=40.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCc------------------------------cccccCCCCceeeEEEEEe---CCc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRR------------------------------MCPAAPRPGVTRVLKWVRF---GKD 263 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~------------------------------~~~v~~~pgtT~~~~~~~~---~~~ 263 (323)
.++|+++|.+|+|||||+|+|++.. .......+|+|.+.....+ +..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 5789999999999999999997541 1112334688888654443 457
Q ss_pred EEEEecCCcc
Q 020622 264 LEFLDSPGII 273 (323)
Q Consensus 264 ~~liDTPGi~ 273 (323)
+.|+||||..
T Consensus 113 ~~iiDTPG~~ 122 (483)
T 3p26_A 113 FTIVDAPGHR 122 (483)
T ss_dssp EEEECCCCCG
T ss_pred EEEEECCCcH
Confidence 8999999974
No 281
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.23 E-value=1.2e-06 Score=83.18 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=58.0
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHh----h-------CceEEEecC
Q 020622 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK----Q-------GTKVIFSNG 184 (323)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~----~-------g~~vi~iSa 184 (323)
..+..+|++|+|+|+...... ..+...+..+|.++|+||+|+.+........+.+.+ . +.+++++||
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA 265 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSA 265 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred HHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEc
Confidence 345999999999997543221 111122235699999999999876544333333322 1 357999999
Q ss_pred cCCCcchhhhHHHHHhhh
Q 020622 185 QLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 185 ~~g~gi~~L~~~l~~l~~ 202 (323)
++|.|+++|.+.+.+...
T Consensus 266 ~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 266 VEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GGTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999888776654
No 282
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.22 E-value=5.7e-06 Score=78.40 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=61.1
Q ss_pred HhhcCeEEEEEeCCCCCCCC-c--HHHHH-H---hCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcc
Q 020622 118 LKLMDVVIEVRDARIPLSTT-H--PLMDQ-W---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~-~--~~i~~-~---l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi 190 (323)
...+|.+++|+|+..+.+.. + ..+.. + ..++|+++|+||+|+.+..+..+..+.+...+..++++||++|.|+
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI 323 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence 35699999999987543211 1 11211 1 1278999999999999876655555555556678999999999999
Q ss_pred hhhhHHHHHhhh
Q 020622 191 MKLSRLAKALAS 202 (323)
Q Consensus 191 ~~L~~~l~~l~~ 202 (323)
++|.+.+.+...
T Consensus 324 ~~l~~~i~~~l~ 335 (357)
T 2e87_A 324 DLVKEEIIKTLR 335 (357)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888766543
No 283
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.22 E-value=1.3e-06 Score=75.04 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=37.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe----CCcEEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|.|.++...........|.......+ ...+.++||||.-.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 357899999999999999999987533221111122222222222 24688999999753
No 284
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.22 E-value=1.8e-06 Score=72.21 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=60.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHh----CCCCeEEEEeccCCccH--H--hHHH
Q 020622 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLNREDMISM--A--DRNA 167 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~l----~~k~~iiVlNK~DLl~~--~--~~~~ 167 (323)
-++||+.. ...+..+|++|+|+|+.++.+..+.. +.... .+.|+++|.||+|+.+. . ...+
T Consensus 59 ~Dt~G~~~------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~ 132 (178)
T 2iwr_A 59 REEAGAPD------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 132 (178)
T ss_dssp EECSSSCC------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH
T ss_pred EECCCCch------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH
Confidence 35677743 34568899999999987654322211 11221 25689999999999421 1 1122
Q ss_pred HHHHHHhh-CceEEEecCcCCCcchhhhHHHHHh
Q 020622 168 WATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 168 ~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..++.... +..++.+||++|.|++++.+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 133 ARALXADMKRCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp HHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHH
Confidence 22333343 4789999999999999988776544
No 285
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.22 E-value=6.5e-07 Score=77.77 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=37.5
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeC-------------CcEEEEecCCcc
Q 020622 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-------------KDLEFLDSPGII 273 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~-------------~~~~liDTPGi~ 273 (323)
...++|+++|.+|||||||+|+|++... .....|.++.+. ..+.+. ..+.|+||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH
Confidence 3468999999999999999999997543 212222222222 112222 248899999963
No 286
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.21 E-value=1.9e-06 Score=72.99 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=37.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE-EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|.+.... ..+..+. .+.++||||..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence 357899999999999999999997643 222223222221 1223322 47899999963
No 287
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.20 E-value=9.2e-07 Score=87.30 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=39.3
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~-~~~~~liDTPGi~ 273 (323)
..++|+++|.||||||||+|+|++..... ..| |.+.. .+.. +..+.|+||||..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TIP--TVGFNVETVTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC--CCC--CSSEEEEEEESSSCEEEEEEECCCG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC--cCC--ccceeEEEEEeCCEEEEEEECCCcH
Confidence 45899999999999999999999876433 333 33332 2332 4568999999964
No 288
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.20 E-value=2.4e-07 Score=79.81 Aligned_cols=101 Identities=11% Similarity=-0.068 Sum_probs=64.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCeEEEEeccCCccHHh--HHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMAD--RNAWAT 170 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~iiVlNK~DLl~~~~--~~~~~~ 170 (323)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+..+.. +.|+++|+||+|+.+..+ ..+..+
T Consensus 76 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 154 (201)
T 3oes_A 76 LVDTAGQ-DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK 154 (201)
T ss_dssp EEEECCC-CTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEECCCc-cchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH
Confidence 4456775 2233333455688999999999875432211 11112211 579999999999975432 122233
Q ss_pred HHHhhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
+....+..++.+||++|.|++++.+.+.+..
T Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 155 LAESWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp HHHHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3445678899999999999999887766543
No 289
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=1.2e-06 Score=77.26 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=36.8
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi 272 (323)
.++|+++|.+|||||||+|++.+.....+...+.++.+ ...+.++. .+.++||+|.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCC
Confidence 57899999999999999999997543233333433333 23334433 3568999995
No 290
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.18 E-value=5e-08 Score=84.03 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=56.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----C----CCCeEEEEeccCCccHHhH--HHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G----NRKRILVLNREDMISMADR--NAWA 169 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~----~k~~iiVlNK~DLl~~~~~--~~~~ 169 (323)
+-++||+ .++.......+..+|++|+|+|+.++.+.. .+..++ . +.|+++|+||+|+.+.... ....
T Consensus 86 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~ 162 (199)
T 3l0i_B 86 IWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 162 (199)
T ss_dssp EECCTTC-TTCCCCSCC--CCCSEEEECC-CCCSHHHH--HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-C
T ss_pred EEECCCc-HhHHHHHHHHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHH
Confidence 4477886 333333445678999999999988653321 122221 1 5789999999999755321 1122
Q ss_pred HHHHhhCceEEEecCcCCCcchhhhHHHHH
Q 020622 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
++....+..++.+||++|.|++++.+.+.+
T Consensus 163 ~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 163 EFADSLGIPFLETSAKNATNVEQSFMTMAA 192 (199)
T ss_dssp HHHHTTTCCBCCCCC---HHHHHHHHHHTT
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 234445678899999999999988776543
No 291
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.18 E-value=2.2e-06 Score=74.10 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=38.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... ......|+.+. ..+..+. .+.|+||||.-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcH
Confidence 467899999999999999999997542 22333333332 1233333 57899999974
No 292
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.18 E-value=3.3e-06 Score=72.68 Aligned_cols=98 Identities=16% Similarity=-0.039 Sum_probs=62.4
Q ss_pred cccchHHHHHHHH-HHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCeEEEEeccCCccHHh--HHHHHHH
Q 020622 102 WYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (323)
Q Consensus 102 ~~PGh~~k~~~~l-~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~~ 171 (323)
+++|... +...+ ...+..+|++|+|+|..++.+.. ...+..+. .+.|+++|.||+|+.+... .++..++
T Consensus 78 Dt~g~~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 156 (195)
T 3cbq_A 78 DIWEQGD-AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 156 (195)
T ss_dssp CCCCCSG-GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred ecCCCcc-chhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHH
Confidence 5566622 22212 24568899999999987643221 12222221 2679999999999975421 2223333
Q ss_pred HHhhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
....+..++.+||++|.|++++.+.+.+.
T Consensus 157 a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 185 (195)
T 3cbq_A 157 AGTLSCKHIETSAALHHNTRELFEGAVRQ 185 (195)
T ss_dssp HHHTTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHhCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 44456789999999999999988766543
No 293
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.18 E-value=5.7e-06 Score=84.96 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=61.6
Q ss_pred CcchhhHhhhcccccCcceeeeecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 020622 72 GSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (323)
+.|-...|++...++......+..... .+.++||| .++...+...+..+|.+++|+|+..+.......+...+. +
T Consensus 48 ~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~-~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ 126 (665)
T 2dy1_A 48 TTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLG 126 (665)
T ss_dssp SSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTT
T ss_pred cccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc-cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHcc
Confidence 344445566677776665554443322 26678999 456678888999999999999988776544344444332 7
Q ss_pred CCeEEEEeccCCc
Q 020622 148 RKRILVLNREDMI 160 (323)
Q Consensus 148 k~~iiVlNK~DLl 160 (323)
.|+++|+||+|+.
T Consensus 127 ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 127 LPRMVVVTKLDKG 139 (665)
T ss_dssp CCEEEEEECGGGC
T ss_pred CCEEEEecCCchh
Confidence 8999999999986
No 294
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.17 E-value=6.6e-07 Score=87.71 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.1
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
-|+|+|.+|+|||||+|.|++.
T Consensus 69 vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 4899999999999999999864
No 295
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.17 E-value=3.8e-06 Score=76.58 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=48.8
Q ss_pred cCeEEEEEeC-CCCCCCCcHHHHHHhC-CCCeEEEEeccCCccHHhHHHH----HHHHHhhCceEEEecCcCCCcchhhh
Q 020622 121 MDVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 121 aDlIl~VvDa-r~~~~~~~~~i~~~l~-~k~~iiVlNK~DLl~~~~~~~~----~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (323)
+|++++++|. +.+....+..+.+.+. ++|+++|+||+|+++..+.... .+.+...+..++.+|++++.|+.++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 7788888855 4466666666666665 7899999999999987665443 33444556788889999999999887
Q ss_pred HHHHHh
Q 020622 195 RLAKAL 200 (323)
Q Consensus 195 ~~l~~l 200 (323)
+.+.+.
T Consensus 196 ~~l~~~ 201 (274)
T 3t5d_A 196 KKIKDR 201 (274)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 776543
No 296
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.17 E-value=6.2e-07 Score=82.83 Aligned_cols=100 Identities=16% Similarity=0.008 Sum_probs=65.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCeEEEEeccCCccHHh---------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~iiVlNK~DLl~~~~--------- 164 (323)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+.....++|+++|+||+|+.+...
T Consensus 207 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 285 (332)
T 2wkq_A 207 LWDTAGL-EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285 (332)
T ss_dssp EEEECCC-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred EEeCCCc-hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccc
Confidence 4467887 33444444567899999999998765432221 1222223789999999999975321
Q ss_pred -----HHHHHHHHHhhCc-eEEEecCcCCCcchhhhHHHHHh
Q 020622 165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
..+..++....+. .++.+||++|.|++++.+.+.+.
T Consensus 286 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 1122233344554 89999999999999988776543
No 297
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.16 E-value=5.4e-06 Score=74.79 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=54.8
Q ss_pred hcCeEEEEEeCCCC--CCCCc--HHHHHHh-----CCCCeEEEEeccCCccHHhHHHHHHHHHh-hCceEEEecCcCCCc
Q 020622 120 LMDVVIEVRDARIP--LSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG 189 (323)
Q Consensus 120 ~aDlIl~VvDar~~--~~~~~--~~i~~~l-----~~k~~iiVlNK~DLl~~~~~~~~~~~~~~-~g~~vi~iSa~~g~g 189 (323)
++|++|+|+|+.++ .+..+ ..+..+. .+.|+++|.||+|+.+.....+..++... .+..++.+||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999875 33211 1111111 36899999999999876555444444433 357889999999999
Q ss_pred chhhhHHHHH
Q 020622 190 TMKLSRLAKA 199 (323)
Q Consensus 190 i~~L~~~l~~ 199 (323)
++++.+.+.+
T Consensus 242 v~elf~~l~~ 251 (255)
T 3c5h_A 242 VDLAFSTLVQ 251 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 298
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.16 E-value=1.3e-06 Score=74.51 Aligned_cols=98 Identities=10% Similarity=-0.049 Sum_probs=63.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--H---HHHHh----CCCCeEEEEeccCCccHHh--HHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL----GNRKRILVLNREDMISMAD--RNAW 168 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~---i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~ 168 (323)
+-++||+. ++.. +...+..+|++++|+|+.++.+..+. . +.... .+.|+++|+||+|+.+..+ ..+.
T Consensus 73 i~Dt~G~~-~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 150 (187)
T 3c5c_A 73 VMDTADLD-TPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150 (187)
T ss_dssp EEECCC----CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH
T ss_pred EEECCCCC-cchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH
Confidence 44678873 2222 34678899999999998754322111 1 11111 3689999999999965322 2233
Q ss_pred HHHHHhhCceEEEecC-cCCCcchhhhHHHHH
Q 020622 169 ATYFAKQGTKVIFSNG-QLGMGTMKLSRLAKA 199 (323)
Q Consensus 169 ~~~~~~~g~~vi~iSa-~~g~gi~~L~~~l~~ 199 (323)
.++..+.+..++.+|| ++|.|++++.+.+.+
T Consensus 151 ~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp HHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence 3444556788999999 899999988876654
No 299
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.16 E-value=2.6e-06 Score=80.76 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcCcc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRM 242 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~ 242 (323)
.+|++||.+|+|||||+|+|.+...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 3799999999999999999998654
No 300
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.16 E-value=3.3e-06 Score=72.58 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=38.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccc-cCCCCceeeEEEEEeCC---cEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v-~~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (323)
.++|+++|.+|||||||+|+|.+...... .+..|++.....+.++. .+.++||||...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 57899999999999999999998643221 12223333333444543 356799999753
No 301
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.16 E-value=2.1e-06 Score=73.10 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=38.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeE--EEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... ......|+.+. ..+..+. .+.++||||..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCc
Confidence 357899999999999999999997642 23333444332 2233332 47789999974
No 302
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.14 E-value=6.6e-07 Score=75.00 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=31.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-C--CcEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G--KDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~--~~~~liDTPGi~ 273 (323)
.++|+++|.+|||||||+|++.+... ....+.|+.+... +.. + -.+.++||||..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-C
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCCh
Confidence 57899999999999999999997542 2222333332110 111 2 235699999974
No 303
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.13 E-value=1.7e-07 Score=93.22 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccHH--hHHHHHH---HH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWAT---YF 172 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~~--~~~~~~~---~~ 172 (323)
+-++||| ..+...+...+..+|++|+|+|+.++......+....+ .+.|+++++||+|+.+.+ ....... .+
T Consensus 55 ~iDTPGh-e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~ 133 (501)
T 1zo1_I 55 FLDTPGH-AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGIL 133 (501)
T ss_dssp EECCCTT-TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCC
T ss_pred EEECCCc-HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhh
Confidence 5678999 44555555667889999999999887655444433333 378999999999997532 1111000 00
Q ss_pred -HhhC--ceEEEecCcCCCcchhhhHHHHH
Q 020622 173 -AKQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 173 -~~~g--~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
...+ ..++++||++|.|+++|++.+..
T Consensus 134 ~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 134 PEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 1112 47899999999999998887643
No 304
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.13 E-value=3.2e-06 Score=72.01 Aligned_cols=94 Identities=10% Similarity=-0.035 Sum_probs=60.4
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH-HHHh-----CCCCeEEEEeccCCccHH----hHHHHH
Q 020622 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM-DQWL-----GNRKRILVLNREDMISMA----DRNAWA 169 (323)
Q Consensus 101 ~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~-~~i-~~~l-----~~k~~iiVlNK~DLl~~~----~~~~~~ 169 (323)
-++||+.. +. .+..+|++++|+|+.++.+..+ ..+ ..+. .+.|+++|.||+|+.... ...+..
T Consensus 72 ~Dt~G~~~-~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~ 145 (184)
T 3ihw_A 72 RDEGGPPE-LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRAR 145 (184)
T ss_dssp EECSSSCC-HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHH
T ss_pred EECCCChh-hh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHH
Confidence 45677622 22 6678999999999876543222 111 1221 246899999999995211 122233
Q ss_pred HHHHhhC-ceEEEecCcCCCcchhhhHHHHHh
Q 020622 170 TYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 170 ~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
++..+.+ ..++.+||++|.|++++.+.+.+.
T Consensus 146 ~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 146 KLSTDLKRCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp HHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 3344555 788999999999999988776543
No 305
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.42 E-value=3.2e-07 Score=79.15 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=36.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CC--cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK--DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~--~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... ......||.+... +.. +. .+.++||||..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 357899999999999999999986542 2222333333211 122 22 35599999974
No 306
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.12 E-value=3.5e-06 Score=71.77 Aligned_cols=57 Identities=28% Similarity=0.313 Sum_probs=36.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|++++.... ....|........+.++. .+.++||||..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCTTCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCCcceEEEEEEECCEEEEEEEEECCCCh
Confidence 4689999999999999999999975432 112221111112333332 35679999964
No 307
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.12 E-value=6.9e-07 Score=75.69 Aligned_cols=100 Identities=14% Similarity=0.030 Sum_probs=62.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCeEEEEeccCCccHHh---------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD--------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~iiVlNK~DLl~~~~--------- 164 (323)
+-++||+. ++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|.||+|+.+...
T Consensus 59 i~Dt~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 137 (184)
T 1m7b_A 59 LWDTSGSP-YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHR 137 (184)
T ss_dssp EEEECCSG-GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred EEECCCCh-hhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcc
Confidence 34567762 233333345689999999999876533221 11222224789999999999974210
Q ss_pred -----HHHHHHHHHhhC-ceEEEecCc-CCCcchhhhHHHHHh
Q 020622 165 -----RNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKAL 200 (323)
Q Consensus 165 -----~~~~~~~~~~~g-~~vi~iSa~-~g~gi~~L~~~l~~l 200 (323)
.++..++..+.+ ..++.+||+ ++.|++++.+.+.+.
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 138 QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 112223333445 678999998 689999988776543
No 308
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.12 E-value=1.6e-06 Score=78.73 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=56.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHH-HHHhC-CCCeEEEEeccCCccHHhHHH-HHHHHHhhCceEEEecCcCCCcchhhhH
Q 020622 119 KLMDVVIEVRDARIPLSTTHPLM-DQWLG-NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i-~~~l~-~k~~iiVlNK~DLl~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
..+|++++|+|+..... ...+ ..+.. +.|+++|+||+|+........ ..+..+.+|.+++++||++|.|+++|++
T Consensus 82 ~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp SCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHH
Confidence 68999999999976421 1122 22222 789999999999875432111 1222344678999999999999999988
Q ss_pred HHHHhh
Q 020622 196 LAKALA 201 (323)
Q Consensus 196 ~l~~l~ 201 (323)
.+.+..
T Consensus 160 ~i~~~~ 165 (258)
T 3a1s_A 160 KIVEYA 165 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876654
No 309
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.12 E-value=2.7e-06 Score=71.94 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.9
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
..++|+++|.+|||||||+|.|.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999988754
No 310
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.10 E-value=6.2e-06 Score=85.06 Aligned_cols=87 Identities=16% Similarity=0.055 Sum_probs=53.0
Q ss_pred chhhHhhhcccccCcceeeeecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 020622 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK 149 (323)
Q Consensus 74 ~~~~~e~e~~~~~~~~~~~~~~~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~ 149 (323)
|-...|++...++..+...+..... .+-++||| ..+.......+..+|.+|+|+|+..+.......+...+ .+.|
T Consensus 53 d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p 131 (691)
T 1dar_A 53 DFMEQERERGITITAAVTTCFWKDHRINIIDTPGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131 (691)
T ss_dssp --------------CCEEEEEETTEEEEEECCCSS-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred cCchhhhhcccccccceEEEEECCeEEEEEECcCc-cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC
Confidence 3334456666777766655543322 26789999 45677788889999999999999887654443333333 2789
Q ss_pred eEEEEeccCCcc
Q 020622 150 RILVLNREDMIS 161 (323)
Q Consensus 150 ~iiVlNK~DLl~ 161 (323)
+++|+||+|+..
T Consensus 132 ~ivviNKiD~~~ 143 (691)
T 1dar_A 132 RIAFANKMDKTG 143 (691)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECCCccc
Confidence 999999999875
No 311
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.10 E-value=4.6e-06 Score=71.44 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=39.0
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCcee--eEEEEEeCC-c--EEEEecCCccC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGK-D--LEFLDSPGIIP 274 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~--~~~~~~~~~-~--~~liDTPGi~~ 274 (323)
..++|+++|.+|||||||+|+|.+.... ....|.++. ....+.++. . +.++||||...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 3578999999999999999999976532 222333333 333444433 3 45699999853
No 312
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.10 E-value=5e-06 Score=72.24 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=37.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE-EEEeCC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~-~~~~~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|.+..+.. .+..+. .+.|+||||..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 357899999999999999999997643 2222333222221 233332 47899999963
No 313
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.09 E-value=3.7e-06 Score=84.14 Aligned_cols=115 Identities=13% Similarity=0.056 Sum_probs=68.9
Q ss_pred hHhhhcccccCcceeeeeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEE
Q 020622 77 YEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRIL 152 (323)
Q Consensus 77 ~~e~e~~~~~~~~~~~~~~~l~~--i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~ii 152 (323)
..|++.+.++......+...-.. +-++||| ..+...+...+..+|.+|+|+|+..+.......+...+. +.|+++
T Consensus 61 ~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiiv 139 (529)
T 2h5e_A 61 EMEKQRGISITTSVMQFPYHDCLVNLLDTPGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILT 139 (529)
T ss_dssp ---------CCTTEEEEEETTEEEEEECCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEE
T ss_pred hhcccCCcceeeeEEEEEECCeEEEEEECCCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEE
Confidence 34666677777666555544333 6789999 456677778899999999999998876544444444443 789999
Q ss_pred EEeccCCccHHhHHHHHHHHH-hhCceEE-----EecCcCCCcchhh
Q 020622 153 VLNREDMISMADRNAWATYFA-KQGTKVI-----FSNGQLGMGTMKL 193 (323)
Q Consensus 153 VlNK~DLl~~~~~~~~~~~~~-~~g~~vi-----~iSa~~g~gi~~L 193 (323)
++||+|+...... +..+.++ .++..++ ..|++++.|+.+|
T Consensus 140 viNK~Dl~~~~~~-~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl 185 (529)
T 2h5e_A 140 FMNKLDRDIRDPM-ELLDEVENELKIGCAPITWPIGCGKLFKGVYHL 185 (529)
T ss_dssp EEECTTSCCSCHH-HHHHHHHHHHCCEEEESEEEESCGGGCCEEEET
T ss_pred EEcCcCCccccHH-HHHHHHHHHhCCCccceecceecccCcceeeeh
Confidence 9999999764331 2223332 2343322 2466666666554
No 314
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.09 E-value=2e-06 Score=80.88 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=36.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEe-CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi~ 273 (323)
..++|+|+|.+|||||||+|+|.+.... ...| |.+... +.. +..+.|+||||-.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCH
Confidence 3568999999999999999999976643 2234 443332 322 3468899999954
No 315
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.09 E-value=4.2e-06 Score=73.10 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=36.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE-EEEeC---CcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFG---KDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~-~~~~~---~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+... .....|.+..+.. .+..+ ..+.|+||||..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 357999999999999999999997653 2222232222221 12222 247799999964
No 316
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.09 E-value=2e-06 Score=81.90 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=31.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCC------CceeeEEE--EEe--CC---cEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLKW--VRF--GK---DLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p------gtT~~~~~--~~~--~~---~~~liDTPGi~ 273 (323)
..++|+++|.+|+|||||+|+|++......+..+ +.|..... +.+ .. .+.++||||+.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 3578999999999999999999876554333221 22333222 111 11 47899999994
No 317
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.08 E-value=2.3e-06 Score=83.18 Aligned_cols=55 Identities=38% Similarity=0.590 Sum_probs=44.0
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEE--EEEeC--CcEEEEecCCccC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG--KDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~--~~~~~--~~~~liDTPGi~~ 274 (323)
.|++||.||+|||||+|+|.+... .++..|+||.... .+... ..+.++||||+..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 489999999999999999998654 6788899887643 34443 5688999999963
No 318
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.08 E-value=3.3e-07 Score=91.82 Aligned_cols=57 Identities=30% Similarity=0.517 Sum_probs=44.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe----CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~----~~~~~liDTPGi~ 273 (323)
++.+|+++|.+|+|||||+|+|.+... .....||+|.++....+ +..+.|+||||.-
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 456799999999999999999997653 44567899988543322 3468999999963
No 319
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.08 E-value=9e-07 Score=77.04 Aligned_cols=100 Identities=14% Similarity=0.030 Sum_probs=63.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCeEEEEeccCCccHHh---------
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD--------- 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~iiVlNK~DLl~~~~--------- 164 (323)
+-++||+. ++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|.||+|+.+...
T Consensus 80 i~Dt~G~~-~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 158 (205)
T 1gwn_A 80 LWDTSGSP-YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHR 158 (205)
T ss_dssp EEEECCSG-GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred EEeCCCcH-hhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccc
Confidence 44578863 233333345689999999999876533221 11222224689999999999974210
Q ss_pred -----HHHHHHHHHhhC-ceEEEecCc-CCCcchhhhHHHHHh
Q 020622 165 -----RNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKAL 200 (323)
Q Consensus 165 -----~~~~~~~~~~~g-~~vi~iSa~-~g~gi~~L~~~l~~l 200 (323)
..+..++.++.+ ..++.+||+ ++.|++++.+.+.+.
T Consensus 159 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 159 QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 112223333455 578999999 688999988776543
No 320
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.07 E-value=3.2e-06 Score=74.77 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=65.1
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---h-CCCCeEEEEeccCCccHHh--HHHHHHHHH
Q 020622 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMISMAD--RNAWATYFA 173 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~---l-~~k~~iiVlNK~DLl~~~~--~~~~~~~~~ 173 (323)
+++|. .++..........+|++++|+|..+..+..+. .+..+ . .+.|++||.||+||.+..+ .++..++.+
T Consensus 68 DtaGq-e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~ 146 (216)
T 4dkx_A 68 DTAGL-ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK 146 (216)
T ss_dssp CCSCT-TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCc-hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH
Confidence 45665 44555556678999999999998765433221 11111 1 2568999999999976432 223334445
Q ss_pred hhCceEEEecCcCCCcchhhhHHHHH
Q 020622 174 KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
+.+..++.+||++|.|++++.+.|.+
T Consensus 147 ~~~~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 147 ELNVMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp HHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence 56788999999999999998776554
No 321
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.06 E-value=8e-07 Score=81.34 Aligned_cols=82 Identities=21% Similarity=0.089 Sum_probs=56.8
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHHH-HHHHHHhhCceEEEecCcCCCcchhhh
Q 020622 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (323)
...+|++|+|+|+.... ....+...+. +.|+++|+||+|+.+...... .....+.+|.+++++||++|.|+++|+
T Consensus 83 ~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred hcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 47999999999987621 1222222222 789999999999976532111 112223457889999999999999998
Q ss_pred HHHHHhh
Q 020622 195 RLAKALA 201 (323)
Q Consensus 195 ~~l~~l~ 201 (323)
+.+.+..
T Consensus 161 ~~i~~~~ 167 (274)
T 3i8s_A 161 LAIDRYK 167 (274)
T ss_dssp HHHHTCC
T ss_pred HHHHHHH
Confidence 8776554
No 322
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.04 E-value=1.5e-06 Score=86.80 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=62.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----CCCCeEEEEeccCCccHHh--HHHHHHHHH
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFA 173 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~iiVlNK~DLl~~~~--~~~~~~~~~ 173 (323)
+.++||+ ..+.......++.+|++|+|+|+..+ .....+...+ .++|+++|+||+|+.+..+ .....+.+.
T Consensus 102 i~Dt~G~-e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~ 178 (535)
T 3dpu_A 102 FWDFGGQ-EIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFP 178 (535)
T ss_dssp EECCCSC-CTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCG
T ss_pred EEECCcH-HHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHH
Confidence 5567885 22333334557889999999998754 1112222222 2589999999999976432 333444555
Q ss_pred hhCceEEEecCcCCCcchhhhHHHHHhh
Q 020622 174 KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
..+..++.+||++|.|+++|.+.+.+..
T Consensus 179 ~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 179 AIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 6677799999999999999988776654
No 323
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.01 E-value=8.1e-07 Score=87.34 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=40.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCc-cc-----------------------------cccCCCCceeeEEEEEe---CC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MC-----------------------------PAAPRPGVTRVLKWVRF---GK 262 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~-~~-----------------------------~v~~~pgtT~~~~~~~~---~~ 262 (323)
..++|+++|.+|+|||||+|+|++.. .. ......|+|.+.....+ +.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 35789999999999999999998541 00 00113688877543333 34
Q ss_pred cEEEEecCCcc
Q 020622 263 DLEFLDSPGII 273 (323)
Q Consensus 263 ~~~liDTPGi~ 273 (323)
.+.|+||||..
T Consensus 86 ~~~iiDtPGh~ 96 (458)
T 1f60_A 86 QVTVIDAPGHR 96 (458)
T ss_dssp EEEEEECCCCT
T ss_pred eEEEEECCCcH
Confidence 68899999963
No 324
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.01 E-value=3.3e-06 Score=81.32 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=41.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcc------c---------cccCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRM------C---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~------~---------~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
.++|+++|.+|+|||||+|+|++... . ......|+|.+...+.+ +..+.|+||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 57899999999999999999986310 0 01124678887654444 3579999999973
No 325
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.01 E-value=2.3e-05 Score=81.01 Aligned_cols=89 Identities=15% Similarity=0.011 Sum_probs=62.0
Q ss_pred CcchhhHhhhcccccCcceeeeeccc-------c--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH
Q 020622 72 GSIEAYEEECDWADLDADLYYWTKSL-------R--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD 142 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~~~~~~l-------~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~ 142 (323)
+.|-...|++..+++...+..+...- . .+-++||| ..+..++...+..+|.+|+|+|+..+.......+.
T Consensus 49 ~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 49 TMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred eecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 44444456677777766655443221 1 26789999 55777888899999999999999887654333333
Q ss_pred HHh--CCCCeEEEEeccCCcc
Q 020622 143 QWL--GNRKRILVLNREDMIS 161 (323)
Q Consensus 143 ~~l--~~k~~iiVlNK~DLl~ 161 (323)
... .+.|+++|+||+|+..
T Consensus 128 ~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 128 RQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHHHcCCCEEEEEeCCCccc
Confidence 333 2789999999999864
No 326
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.01 E-value=3.1e-06 Score=77.29 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhcCeEE-EEEeCCCCCCCCcH-HHHHHhC--CCCeEEEEeccCCccHHh-HHHHHHH-HHhh--C-ceE
Q 020622 109 KTEKELKDQLKLMDVVI-EVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-FAKQ--G-TKV 179 (323)
Q Consensus 109 k~~~~l~~~i~~aDlIl-~VvDar~~~~~~~~-~i~~~l~--~k~~iiVlNK~DLl~~~~-~~~~~~~-~~~~--g-~~v 179 (323)
.....+...+..++.++ +|+|+..+....+. .+.+.+. ++|+++|+||+|+.+... ..++.+. +... + ..+
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 229 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence 45556667788888655 79999877665553 3555554 689999999999986543 2222111 1111 2 357
Q ss_pred EEecCcCCCcchhhhHHHHH
Q 020622 180 IFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~ 199 (323)
+++||++|.|+++|.+.+.+
T Consensus 230 ~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 230 VNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CCCCCBCTTSCBCHHHHHHH
T ss_pred ECCChhhccccccHHHHHHH
Confidence 78999999999999887765
No 327
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.01 E-value=1.7e-06 Score=85.62 Aligned_cols=57 Identities=23% Similarity=0.461 Sum_probs=35.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcc------ccccCCCCceeeEEE--EEe-CCcEEEEecCCc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRM------CPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGI 272 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~------~~v~~~pgtT~~~~~--~~~-~~~~~liDTPGi 272 (323)
..++|+++|.+|+|||||+|+|.+... ...+..+|+|.+... +.. +..+.++||||.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 357899999999999999999997651 234556788887532 333 347899999997
No 328
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.00 E-value=2.3e-06 Score=81.92 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=37.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCccC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (323)
+|+++|.+|+|||||+|+|+ ..|+|.+.....+ +..+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 79999999999999999999 3466766554444 45689999999853
No 329
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.99 E-value=4.3e-06 Score=81.47 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=22.0
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|+++|.+|+|||||+|+|++.
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCHHHHHHHHHhh
Confidence 578999999999999999999864
No 330
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.98 E-value=8.4e-06 Score=75.13 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=39.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEE--EEeC-Cc--EEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG-KD--LEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~--~~~~-~~--~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|++.+... .....+||.+... +..+ .. +.++||||..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 357899999999999999999996542 3444556655322 2333 33 4599999974
No 331
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.97 E-value=1.2e-05 Score=80.37 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=34.8
Q ss_pred CCcchhhhHHHHHhhhhhhhhhccCCCCccceEeeeecCCCCChhhHHHhhhcCc
Q 020622 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
..|+..+.+.++++...... .........++|+++|.||||||||+|+|.+..
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~--g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSK--GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHT--TCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred HhCHHHHHHHHHHHHHhhcc--CcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677777777766542110 011112346899999999999999999999764
No 332
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.97 E-value=3.9e-06 Score=69.87 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=52.1
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccHHhHH-HHHHHHHhhCceEEEecCcCCCcchhhhH
Q 020622 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
..+|++++|+|+..... ...+...+ .++|+++|.||+|+....... +..+.....+..++++||++|.|++++.+
T Consensus 80 ~~~~~~i~v~D~~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 80 EKPDLVVNIVDATALER--NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp HCCSEEEEEEETTCHHH--HHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEecCCchhH--hHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHH
Confidence 47999999999875211 11111112 278999999999986542211 11122234567899999999999999887
Q ss_pred HHHH
Q 020622 196 LAKA 199 (323)
Q Consensus 196 ~l~~ 199 (323)
.+.+
T Consensus 158 ~l~~ 161 (165)
T 2wji_A 158 AISI 161 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 333
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.97 E-value=5.3e-06 Score=80.11 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=30.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCcc--ccccCCCCceeeEE
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK 256 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~--~~v~~~pgtT~~~~ 256 (323)
..++|+++|.+|+|||||+|+|++... ......+|+|.+..
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 51 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG 51 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEe
Confidence 457899999999999999999996432 22233478887643
No 334
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.96 E-value=2.7e-06 Score=82.04 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=41.5
Q ss_pred cceEeeeecCCCCChhhHHHhhhcC---c----cc-c--c------cCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKR---R----MC-P--A------APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~---~----~~-~--v------~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
..++|+++|.+|+|||||+|+|++. . .. . . ...+|+|.+.....+ +..+.|+||||..
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3578999999999999999999863 1 00 0 0 113577877544433 3579999999985
No 335
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.95 E-value=1.5e-05 Score=71.26 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=63.0
Q ss_pred cccccchHHHH-----HHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-H----HHH--hCCCCeEEEEeccCCccHHhHHH
Q 020622 100 VQWYPGHIAKT-----EKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQW--LGNRKRILVLNREDMISMADRNA 167 (323)
Q Consensus 100 i~~~PGh~~k~-----~~~l~~~i~~aDlIl~VvDar~~~~~~~~~-i----~~~--l~~k~~iiVlNK~DLl~~~~~~~ 167 (323)
+.++||..... .+.+.+.+.. +++++++|+.......+.. . ... ..++|.++|+||+|+.+..+..+
T Consensus 113 iiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~ 191 (262)
T 1yrb_A 113 LIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 191 (262)
T ss_dssp EEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHH
T ss_pred EEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHH
Confidence 34467764432 2334445566 9999999987554332211 0 011 12689999999999987643221
Q ss_pred HHH----------H------------------HHhhC--ceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 168 WAT----------Y------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 168 ~~~----------~------------------~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
..+ . +.+.+ ..++++||++|.|+++|.+.+.+...
T Consensus 192 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 192 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 111 1 12223 36899999999999999888776543
No 336
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.95 E-value=1.2e-06 Score=87.20 Aligned_cols=57 Identities=26% Similarity=0.406 Sum_probs=43.4
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe---CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (323)
++.+|+++|.+|+|||||+|+|.+.. ...+..+|+|.++..+.+ +..+.|+||||..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe 62 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHA 62 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcH
Confidence 45679999999999999999998743 334555788877543333 4578899999974
No 337
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.94 E-value=1.9e-05 Score=72.73 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=64.7
Q ss_pred cccccchHH------------HHHHHHHHHHhhcCeEEEEEeC-CCCCCCCc-HHHHHHhC--CCCeEEEEeccCCccHH
Q 020622 100 VQWYPGHIA------------KTEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNREDMISMA 163 (323)
Q Consensus 100 i~~~PGh~~------------k~~~~l~~~i~~aDlIl~VvDa-r~~~~~~~-~~i~~~l~--~k~~iiVlNK~DLl~~~ 163 (323)
+-++||+.. .........+..+|++++|+|+ ..+....+ ..+..++. ++|+++|+||+|+.+..
T Consensus 135 lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp EEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred EEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 556788743 3455666778999999999996 55555444 36776664 68999999999998654
Q ss_pred h-HHHHHHH-HHhhCceEEE---ecCcC---CCcchhhhHHHHHhhh
Q 020622 164 D-RNAWATY-FAKQGTKVIF---SNGQL---GMGTMKLSRLAKALAS 202 (323)
Q Consensus 164 ~-~~~~~~~-~~~~g~~vi~---iSa~~---g~gi~~L~~~l~~l~~ 202 (323)
. ..++.+. +...+..+++ +|+.+ +.|+.++.+.+.++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 215 TDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp CCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 3 1222211 1111123444 45555 6777777777666554
No 338
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.91 E-value=5.4e-05 Score=64.99 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=60.3
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHH----HHHHHHHhhC--ceEEEecCcCCCcc
Q 020622 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN----AWATYFAKQG--TKVIFSNGQLGMGT 190 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~----~~~~~~~~~g--~~vi~iSa~~g~gi 190 (323)
..+|.+++++|+..+....+..+..++. +.|.++|.||+|+++..+.. .....+.+.+ ..++++|++++.|+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 5789999999998776544444555543 67899999999998765322 2223333333 46789999999999
Q ss_pred hhhhHHHHHhhh
Q 020622 191 MKLSRLAKALAS 202 (323)
Q Consensus 191 ~~L~~~l~~l~~ 202 (323)
+++.+.+.++..
T Consensus 187 ~~l~~~l~~~~~ 198 (210)
T 1pui_A 187 DKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999988877653
No 339
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.91 E-value=7e-06 Score=69.58 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=61.7
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHH---hCCCCeEEEEeccCCccHHhHH----HHHHH
Q 020622 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRN----AWATY 171 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~---~~i~~~---l~~k~~iiVlNK~DLl~~~~~~----~~~~~ 171 (323)
+++|. .++.......+..+|++++|+|..++..+.+ ..+..+ ..+.|+++|.||+|+.+..... ...+.
T Consensus 62 Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 140 (184)
T 2zej_A 62 DFAGR-EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKE 140 (184)
T ss_dssp EECSH-HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHH
T ss_pred ecCCC-HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHH
Confidence 45675 3444434456788999999999876532111 111111 1367899999999998764432 22222
Q ss_pred HH-hhCce----EEEecCcCCC-cchhhhHHHHHhh
Q 020622 172 FA-KQGTK----VIFSNGQLGM-GTMKLSRLAKALA 201 (323)
Q Consensus 172 ~~-~~g~~----vi~iSa~~g~-gi~~L~~~l~~l~ 201 (323)
+. ..+.. ++.+||++|. |+++|.+.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 141 LLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp TTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 32 23444 8899999996 8888877765543
No 340
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.91 E-value=2.5e-05 Score=80.78 Aligned_cols=89 Identities=16% Similarity=0.052 Sum_probs=55.2
Q ss_pred CCcchhhHhhhcccccCcceeeee--cc-------ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH
Q 020622 71 NGSIEAYEEECDWADLDADLYYWT--KS-------LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM 141 (323)
Q Consensus 71 ~~~~~~~~e~e~~~~~~~~~~~~~--~~-------l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i 141 (323)
.|.|-...|+|-++++...-..+. .. +--+.++||| ..+..++...++-+|-+|+|||+..+....-..+
T Consensus 51 ~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v 129 (709)
T 4fn5_A 51 ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV 129 (709)
T ss_dssp -----------------CCEEEEEECCTTSCSCCEEEEEECCCSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred ccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH
Confidence 467777889999999887655443 21 1227799999 6789999999999999999999998886655444
Q ss_pred HHHhC--CCCeEEEEeccCCc
Q 020622 142 DQWLG--NRKRILVLNREDMI 160 (323)
Q Consensus 142 ~~~l~--~k~~iiVlNK~DLl 160 (323)
.+... +.|+++++||+|..
T Consensus 130 ~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 130 WRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp HHHHHHHTCCEEEEEECSSST
T ss_pred HHHHHHcCCCeEEEEcccccc
Confidence 44432 88999999999975
No 341
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.90 E-value=1.8e-05 Score=81.58 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=53.8
Q ss_pred hHhhhcccccCcceeeeecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCeEE
Q 020622 77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRIL 152 (323)
Q Consensus 77 ~~e~e~~~~~~~~~~~~~~~l~--~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~ii 152 (323)
..|++...++......+...-. .+-++|||. ++...+...+..+|.+|+|+|+..+.......+...+. +.|+++
T Consensus 54 ~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~-df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~il 132 (693)
T 2xex_A 54 EQEQDRGITITSAATTAAWEGHRVNIIDTPGHV-DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIV 132 (693)
T ss_dssp ----------CCSEEEEEETTEEEEEECCCCCS-SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhhcCceEeeeeEEEEECCeeEEEEECcCCc-chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEE
Confidence 3455666676666554443322 367899994 46667778889999999999998876654444443333 789999
Q ss_pred EEeccCCccH
Q 020622 153 VLNREDMISM 162 (323)
Q Consensus 153 VlNK~DLl~~ 162 (323)
|+||+|+...
T Consensus 133 viNK~Dl~~~ 142 (693)
T 2xex_A 133 FVNKMDKLGA 142 (693)
T ss_dssp EEECTTSTTC
T ss_pred EEECCCcccc
Confidence 9999999753
No 342
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.89 E-value=6e-06 Score=85.78 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=69.9
Q ss_pred cccccchHH------------HHHHHHHHHH-hhcCeEEEEEeCCCCCCCCcH-HHHHHhC--CCCeEEEEeccCCccHH
Q 020622 100 VQWYPGHIA------------KTEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMA 163 (323)
Q Consensus 100 i~~~PGh~~------------k~~~~l~~~i-~~aDlIl~VvDar~~~~~~~~-~i~~~l~--~k~~iiVlNK~DLl~~~ 163 (323)
+.++||... +..+.+.+.+ ..+|+|++|+|++.+....+. .+...+. ++|+++|+||+|+++..
T Consensus 154 LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 154 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp EEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTT
T ss_pred EEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcc
Confidence 557787532 3334444555 578999999999988877776 5777765 68999999999999764
Q ss_pred hH-HHHHH-HHH--hhC-ceEEEecCcCCCcchhhhHHHHH
Q 020622 164 DR-NAWAT-YFA--KQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 164 ~~-~~~~~-~~~--~~g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
.. ....+ .+. +.+ ..++++||++|.|+++|.+.+.+
T Consensus 234 ~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 234 TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred hhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 32 11111 000 113 35788999999999999887765
No 343
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.88 E-value=7.2e-06 Score=77.41 Aligned_cols=23 Identities=52% Similarity=0.801 Sum_probs=20.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
...++++|.||+|||||+|.|.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999973
No 344
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.88 E-value=9.3e-06 Score=78.37 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=27.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcc--ccccCCCCceeeEE
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK 256 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~--~~v~~~pgtT~~~~ 256 (323)
.++|+++|.+|+|||||+|+|.+... ......+|+|.+..
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 49 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG 49 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEec
Confidence 57899999999999999999996532 22233478887643
No 345
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.87 E-value=1.8e-06 Score=86.44 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=38.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc---------------ccc------CCCCceeeEEE--E-EeCCcEEEEecCCc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAA------PRPGVTRVLKW--V-RFGKDLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~---------------~v~------~~pgtT~~~~~--~-~~~~~~~liDTPGi 272 (323)
..+|+|+|.+|+|||||+|+|+..... .+. ..+|+|..... + ..+..+.|+||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 347999999999999999999722110 011 12466655322 2 22457889999998
Q ss_pred cC
Q 020622 273 IP 274 (323)
Q Consensus 273 ~~ 274 (323)
..
T Consensus 93 ~d 94 (528)
T 3tr5_A 93 AD 94 (528)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 346
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.87 E-value=3.7e-06 Score=81.95 Aligned_cols=57 Identities=32% Similarity=0.480 Sum_probs=34.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCc-ccc-----------------------------ccCCCCceeeEEEEEe---CCc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCP-----------------------------AAPRPGVTRVLKWVRF---GKD 263 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~-~~~-----------------------------v~~~pgtT~~~~~~~~---~~~ 263 (323)
.++|+++|.+|+|||||+|+|+... ... ....+|+|.+.....+ +..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 5789999999999999999998541 110 0114688888654333 457
Q ss_pred EEEEecCCcc
Q 020622 264 LEFLDSPGII 273 (323)
Q Consensus 264 ~~liDTPGi~ 273 (323)
+.|+||||..
T Consensus 86 ~~iiDtpG~~ 95 (435)
T 1jny_A 86 FTIIDAPGHR 95 (435)
T ss_dssp EEECCCSSST
T ss_pred EEEEECCCcH
Confidence 9999999974
No 347
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.86 E-value=3e-06 Score=77.09 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=56.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHH-HHh-CC-CCeEEEEeccCCccHHhHHH-HHHHHHhhCceEEEecCcCCCcchhhh
Q 020622 119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GN-RKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~-~~l-~~-k~~iiVlNK~DLl~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (323)
..+|++++|+|+..+. .+..+. ... .+ .|+++|+||+|+.+...... .....+.+|.+++++|+++|.|+.+|.
T Consensus 80 ~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence 6899999999998642 111111 111 24 89999999999876542111 112233467889999999999999998
Q ss_pred HHHHHhhh
Q 020622 195 RLAKALAS 202 (323)
Q Consensus 195 ~~l~~l~~ 202 (323)
+.+.....
T Consensus 158 ~~i~~~~~ 165 (271)
T 3k53_A 158 RMIALMAE 165 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88776543
No 348
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.85 E-value=4e-06 Score=70.72 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=53.8
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCeEEEEeccCCccHHhHH-HHHHHHHhhCceEEEecCcCCCcchhhhHH
Q 020622 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSRL 196 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~iiVlNK~DLl~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~ 196 (323)
..+|++++|+|+.... .....+..+. .+.|+++|+||+|+....... ...+.....+..++++||+++.|++++.+.
T Consensus 84 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKA 162 (188)
T ss_dssp HCCSEEEEEEEGGGHH-HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHH
T ss_pred cCCCEEEEEecchhHH-HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHH
Confidence 4599999999986421 0011111222 268999999999987543211 111222345678999999999999999887
Q ss_pred HHHhhh
Q 020622 197 AKALAS 202 (323)
Q Consensus 197 l~~l~~ 202 (323)
+.+...
T Consensus 163 i~~~~~ 168 (188)
T 2wjg_A 163 ISIAVK 168 (188)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 766543
No 349
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.85 E-value=5.6e-05 Score=72.05 Aligned_cols=92 Identities=15% Similarity=-0.011 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHh--CCCCeEEEEeccCCccHHhH--HHHHH-HHHhh-C--
Q 020622 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWL--GNRKRILVLNREDMISMADR--NAWAT-YFAKQ-G-- 176 (323)
Q Consensus 111 ~~~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l--~~k~~iiVlNK~DLl~~~~~--~~~~~-~~~~~-g-- 176 (323)
.+.+.+.+..+|++++|+|+..+.+.... .+...+ .++|+++|.||+|+.+.... ..... ..... .
T Consensus 248 f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 248 FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 34455668999999999998765311111 112222 36899999999999864311 11111 11233 2
Q ss_pred ceEEEecCcCCCcchhhhHHHHHhhh
Q 020622 177 TKVIFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
..++++||+++.|+++|.+.+.++..
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 36799999999999999988877654
No 350
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.84 E-value=3.1e-05 Score=71.79 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=59.1
Q ss_pred cccccchHHHH-----HHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHH---hCCCCeEEEEeccCCccHHhHH
Q 020622 100 VQWYPGHIAKT-----EKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQW---LGNRKRILVLNREDMISMADRN 166 (323)
Q Consensus 100 i~~~PGh~~k~-----~~~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~---l~~k~~iiVlNK~DLl~~~~~~ 166 (323)
+-++||+. ++ .......+..+|++|+|+|+.++.+..+.. +..+ ..+.|+++|+||+|+.+.++..
T Consensus 56 i~Dt~G~~-~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~ 134 (307)
T 3r7w_A 56 LWDCGGQD-VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE 134 (307)
T ss_dssp EEEECCSH-HHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH
T ss_pred EEECCCcH-HHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh
Confidence 55679983 34 233345568999999999998765433221 1111 1278999999999998743322
Q ss_pred --------HHHHHHHhhC---ceEEEecCcCCCcchhhh
Q 020622 167 --------AWATYFAKQG---TKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 167 --------~~~~~~~~~g---~~vi~iSa~~g~gi~~L~ 194 (323)
+..++....| ..++.+||++ .|+.++.
T Consensus 135 ~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~ 172 (307)
T 3r7w_A 135 ELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAW 172 (307)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHH
Confidence 2223334455 5789999999 5555443
No 351
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.84 E-value=1.7e-05 Score=70.01 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=33.7
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccccccCCCCceee--EEEEEeCC---cEEEEecCCcc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (323)
.+||++||-+|||||||++++.... +.....|.+..+ ...+..+. .+.|+||+|--
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 4689999999999999999998643 222222322222 22233332 36799999964
No 352
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.81 E-value=8.1e-06 Score=77.01 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.5
Q ss_pred ceEeeeecCCCCChhhHHHhhhc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
...|+++|.||+|||||+|.|.+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999963
No 353
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.80 E-value=7.3e-06 Score=79.01 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.7
Q ss_pred cceEeeeecCCCCChhhHHHhhhcC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
..++|+++|.+|+|||||+|+|++.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 3578999999999999999999974
No 354
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.79 E-value=1.2e-05 Score=76.18 Aligned_cols=23 Identities=52% Similarity=0.713 Sum_probs=20.7
Q ss_pred cceEeeeecCCCCChhhHHHhhh
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLL 238 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~ 238 (323)
....|+++|.||||||||+|.|.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999986
No 355
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=3.1e-05 Score=68.00 Aligned_cols=83 Identities=14% Similarity=0.025 Sum_probs=53.5
Q ss_pred HhhcCeEEEEEeCCCCCCCCcH-HH-HHHh-----CCCCeEEEEeccCCccHHh--HHHHHHHHHhhCceEEEecCcCCC
Q 020622 118 LKLMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~-~i-~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
...+|.+|+|+|..+..+.... .+ ..+. .+.|+++|.||+||.+..+ ..+...+....+..++.+||++|.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 4668999999997654322111 11 1111 2579999999999975322 112122233456788999999999
Q ss_pred cchhhhHHHHHh
Q 020622 189 GTMKLSRLAKAL 200 (323)
Q Consensus 189 gi~~L~~~l~~l 200 (323)
|++++.+.+.+.
T Consensus 189 ~v~elf~~l~~~ 200 (211)
T 2g3y_A 189 NVKELFEGIVRQ 200 (211)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999988776543
No 356
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.78 E-value=3.4e-05 Score=72.70 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=58.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHH----hh
Q 020622 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFA----KQ 175 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~----~~ 175 (323)
+.++||+.. ... .....+|++++|+|+..+..... +.....++|.++|+||+|+.+........+.++ ..
T Consensus 153 liDTpG~~~-~~~---~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~ 226 (341)
T 2p67_A 153 IVETVGVGQ-SET---EVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHIL 226 (341)
T ss_dssp EEEEECCTT-HHH---HHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHS
T ss_pred EEeCCCccc-hHH---HHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhc
Confidence 445788632 211 24689999999999865422110 100112468999999999987544333222222 11
Q ss_pred -------CceEEEecCcCCCcchhhhHHHHHhh
Q 020622 176 -------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (323)
Q Consensus 176 -------g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (323)
...++++||++|.|+++|.+.+.+..
T Consensus 227 ~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 227 RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 24688999999999999988877654
No 357
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.76 E-value=5e-05 Score=67.28 Aligned_cols=101 Identities=12% Similarity=0.034 Sum_probs=56.7
Q ss_pred cccccchH----------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-------CCCeEEEEeccCCccH
Q 020622 100 VQWYPGHI----------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLNREDMISM 162 (323)
Q Consensus 100 i~~~PGh~----------~k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-------~k~~iiVlNK~DLl~~ 162 (323)
+-++||.. .++.+.+......+|++|+|+|+.. .+..+......+. .+|+++|+||+|+++.
T Consensus 82 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 82 VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp EEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred EEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 66788853 2233333333456799999999864 3333333222221 3589999999999876
Q ss_pred HhHH--------HHHHHHHhhCceEEEecCcCC-----CcchhhhHHHHHhh
Q 020622 163 ADRN--------AWATYFAKQGTKVIFSNGQLG-----MGTMKLSRLAKALA 201 (323)
Q Consensus 163 ~~~~--------~~~~~~~~~g~~vi~iSa~~g-----~gi~~L~~~l~~l~ 201 (323)
.... ...+...+++..++++++..+ .++.+|++.+..+.
T Consensus 161 ~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 161 TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp ----------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 5433 223334456666777776643 45666666555443
No 358
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.75 E-value=5.6e-05 Score=77.96 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=67.8
Q ss_pred cccccchHHH--HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH-HHHhC--CCCeEEEEeccCCccHH--------hHH
Q 020622 100 VQWYPGHIAK--TEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMISMA--------DRN 166 (323)
Q Consensus 100 i~~~PGh~~k--~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i-~~~l~--~k~~iiVlNK~DLl~~~--------~~~ 166 (323)
+-++||+... ..+.+...+..+|++|+|+|+..+.+..+..+ ...+. ++|+++|+||+|+.... +..
T Consensus 178 LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~ 257 (695)
T 2j69_A 178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQ 257 (695)
T ss_dssp EEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHH
T ss_pred EEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHH
Confidence 6688997432 23455577899999999999988766555433 33444 67899999999997553 111
Q ss_pred H----HHH----HHHhh---------CceEEEecCc--------------CCCcchhhhHHHHHh
Q 020622 167 A----WAT----YFAKQ---------GTKVIFSNGQ--------------LGMGTMKLSRLAKAL 200 (323)
Q Consensus 167 ~----~~~----~~~~~---------g~~vi~iSa~--------------~g~gi~~L~~~l~~l 200 (323)
. ..+ .+... ...++++||+ ++.|+.+|.+.+.+.
T Consensus 258 ~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 258 ASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp HHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHH
Confidence 1 111 12111 1358999999 999999987766553
No 359
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.75 E-value=5.1e-06 Score=76.12 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=54.5
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCeEEEEeccCCccHHhHH-HHHHHHHhhCceEEEecCcCCCcchhhhH
Q 020622 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~iiVlNK~DLl~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
..+|++++|+|+.... ....+...+ .+.|+++|+||+|+....... ...+....++.+++++||++|.|+++|.+
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHH
Confidence 3699999999987531 112222222 278999999999987543211 11122234578899999999999999988
Q ss_pred HHHHhh
Q 020622 196 LAKALA 201 (323)
Q Consensus 196 ~l~~l~ 201 (323)
.+.+..
T Consensus 157 ~i~~~~ 162 (272)
T 3b1v_A 157 KAAHTT 162 (272)
T ss_dssp HHHHSC
T ss_pred HHHHHH
Confidence 776543
No 360
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.72 E-value=7.4e-06 Score=80.66 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=32.6
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccc------------------------cc------cCCCCceeeEEE--EEe-CC
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------PA------APRPGVTRVLKW--VRF-GK 262 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~------------------------~v------~~~pgtT~~~~~--~~~-~~ 262 (323)
..++|+++|.+|+|||||+|+|+..... .+ ....|+|.+... +.. +.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 3578999999999999999999742110 00 113577877543 222 45
Q ss_pred cEEEEecCCcc
Q 020622 263 DLEFLDSPGII 273 (323)
Q Consensus 263 ~~~liDTPGi~ 273 (323)
.+.|+||||..
T Consensus 122 ~~~iiDtPGh~ 132 (467)
T 1r5b_A 122 RFSLLDAPGHK 132 (467)
T ss_dssp EEEECCCCC--
T ss_pred EEEEEECCCcH
Confidence 68899999974
No 361
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.71 E-value=9.4e-06 Score=83.76 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=35.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc-----------cccC------CCCceeeEEE--EE-eCCcEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKW--VR-FGKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~-----------~v~~------~pgtT~~~~~--~~-~~~~~~liDTPGi~~ 274 (323)
..+|+++|.+|+|||||+|+|+..... .+.+ .+|+|..... +. .+..+.|+||||...
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 468999999999999999999842111 1111 3566665322 22 245689999999964
No 362
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.71 E-value=1.4e-05 Score=80.06 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=35.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc---------------ccc------CCCCceeeE---EEEEeCCcEEEEecCCc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAA------PRPGVTRVL---KWVRFGKDLEFLDSPGI 272 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~---------------~v~------~~pgtT~~~---~~~~~~~~~~liDTPGi 272 (323)
..+|+++|.+|+|||||+|+|+..... .+. ...|+|... ...+.+..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 467999999999999999999863211 111 134555442 22222456899999998
Q ss_pred cC
Q 020622 273 IP 274 (323)
Q Consensus 273 ~~ 274 (323)
..
T Consensus 93 ~d 94 (529)
T 2h5e_A 93 ED 94 (529)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 363
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.71 E-value=1.6e-05 Score=69.19 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
..+|+++|.+|||||||+|+|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 364
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.70 E-value=2.4e-05 Score=70.22 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=62.4
Q ss_pred cccccchHH----------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-------CCCeEEEEe-ccCCcc
Q 020622 100 VQWYPGHIA----------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLN-REDMIS 161 (323)
Q Consensus 100 i~~~PGh~~----------k~~~~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-------~k~~iiVlN-K~DLl~ 161 (323)
+-++|||.. ...+.+...+..+|++|+|+|+.. +...+..+..++. .+|.++|+| |+|+.+
T Consensus 75 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 75 IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp EEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred EEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 556788742 123344445678999999999974 3333333333332 458888888 999975
Q ss_pred HHhHHHH---------HHHHHhhCce---E--EEecCcCCCcchhhhHHHHHhhh
Q 020622 162 MADRNAW---------ATYFAKQGTK---V--IFSNGQLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 162 ~~~~~~~---------~~~~~~~g~~---v--i~iSa~~g~gi~~L~~~l~~l~~ 202 (323)
.. ...+ .+.....+.. + +++||+++.|+++|.+.+..+..
T Consensus 154 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 154 GS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp CC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHH
Confidence 32 2221 1123333321 2 67899999999999888766543
No 365
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.70 E-value=2.3e-05 Score=71.73 Aligned_cols=57 Identities=26% Similarity=0.424 Sum_probs=34.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCcccccc-------CCCCceee--EEE----EEeCCcEEEEecCCccC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV--LKW----VRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~-------~~pgtT~~--~~~----~~~~~~~~liDTPGi~~ 274 (323)
++++++|.+|+|||||+|+|.+......+ +.+.++.. +.. ..+...+.++||||+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 57999999999999999999975433222 22333321 111 11234688999999964
No 366
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.69 E-value=3.9e-05 Score=74.69 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=38.8
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc--c-ccCCCCceeeEEEEEe-C----CcEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC--P-AAPRPGVTRVLKWVRF-G----KDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~--~-v~~~pgtT~~~~~~~~-~----~~~~liDTPGi~~ 274 (323)
.++++|+|.+|+|||||+|.|.+.... . ....|+.++....+.. . ..+.++||||+..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 346899999999999999999986421 1 1223566665322222 1 2578999999964
No 367
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.69 E-value=1.1e-05 Score=69.87 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=46.2
Q ss_pred cccccchHHHHHHHHHHHHhh----cCeEEEEEeCC-CCCCCC--cHHHHHHh--------CCCCeEEEEeccCCccHHh
Q 020622 100 VQWYPGHIAKTEKELKDQLKL----MDVVIEVRDAR-IPLSTT--HPLMDQWL--------GNRKRILVLNREDMISMAD 164 (323)
Q Consensus 100 i~~~PGh~~k~~~~l~~~i~~----aDlIl~VvDar-~~~~~~--~~~i~~~l--------~~k~~iiVlNK~DLl~~~~ 164 (323)
+-++||+. ++...+...+.. +|++|+|+|+. .+.+.. ...+..++ .+.|+++|+||+|+.+...
T Consensus 59 l~Dt~G~~-~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 59 LVDFPGHV-KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEECCCCG-GGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEECCCcH-HHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 45678883 333444444444 99999999998 332221 12232322 3678999999999986543
Q ss_pred HHHHH-------HHH-HhhCceEEEecCcCCCc
Q 020622 165 RNAWA-------TYF-AKQGTKVIFSNGQLGMG 189 (323)
Q Consensus 165 ~~~~~-------~~~-~~~g~~vi~iSa~~g~g 189 (323)
..++. ..+ ...+..++.+|+++|.+
T Consensus 138 ~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 138 PSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 22221 111 22234577889988765
No 368
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.68 E-value=6e-05 Score=73.18 Aligned_cols=88 Identities=25% Similarity=0.308 Sum_probs=61.7
Q ss_pred HHHHhhcCeEEEEEeCC-CCCCCCc---HHHHHH---hCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCC
Q 020622 115 KDQLKLMDVVIEVRDAR-IPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187 (323)
Q Consensus 115 ~~~i~~aDlIl~VvDar-~~~~~~~---~~i~~~---l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g 187 (323)
.+.++++|.+++++|+. .+..... .++..+ +..+|.++|+||+|+........+.+.+...+..++++||+++
T Consensus 230 l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 34578899999999985 2221111 112222 2368999999999998764445555556556778999999999
Q ss_pred CcchhhhHHHHHhhh
Q 020622 188 MGTMKLSRLAKALAS 202 (323)
Q Consensus 188 ~gi~~L~~~l~~l~~ 202 (323)
.|+++|.+.+.++..
T Consensus 310 ~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 310 AGLPALKEALHALVR 324 (416)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999888766554
No 369
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.68 E-value=2.4e-05 Score=72.61 Aligned_cols=58 Identities=28% Similarity=0.328 Sum_probs=30.1
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCC------CceeeE--EEEEe-----CCcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVL--KWVRF-----GKDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p------gtT~~~--~~~~~-----~~~~~liDTPGi~ 273 (323)
..++|+++|.+|||||||+|+|.+.+....+..+ ..|... ..+.+ ...+.++||||+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 3578999999999999999999875333322211 012111 11111 2357899999994
No 370
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.66 E-value=6.9e-05 Score=72.68 Aligned_cols=57 Identities=26% Similarity=0.213 Sum_probs=35.8
Q ss_pred eEeeeecCCCCChhhHHHhhhcCcccccc----CCCCceeeEEEEEe--CCcEEEEecCCccC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA----PRPGVTRVLKWVRF--GKDLEFLDSPGIIP 274 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~~~~v~----~~pgtT~~~~~~~~--~~~~~liDTPGi~~ 274 (323)
..++|+|.+|+|||||+|+|.+......+ ...-+|+....++. ..++.+.|+||+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccc
Confidence 46899999999999999999984321111 11123443222222 24689999999964
No 371
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.64 E-value=0.00015 Score=68.52 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=52.1
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHHhHHHHHHHH----Hh-------hCceEEEecCc
Q 020622 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYF----AK-------QGTKVIFSNGQ 185 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~----~~-------~g~~vi~iSa~ 185 (323)
..+.+|++++|+|+..+... ..+...+...+.++|+||+|+.+..........+ .. ...+++++||+
T Consensus 184 l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~ 261 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISAR 261 (349)
T ss_dssp HHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTT
T ss_pred HHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecC
Confidence 46799999999998765321 1122223367889999999998654322212222 11 02468899999
Q ss_pred CCCcchhhhHHHHHhh
Q 020622 186 LGMGTMKLSRLAKALA 201 (323)
Q Consensus 186 ~g~gi~~L~~~l~~l~ 201 (323)
+|.|+++|.+.+.++.
T Consensus 262 ~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 262 SGEGISEMWDKMKDFQ 277 (349)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988887654
No 372
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.60 E-value=1.4e-05 Score=81.02 Aligned_cols=56 Identities=23% Similarity=0.447 Sum_probs=36.8
Q ss_pred cceEeeeecCCCCChhhHHHhhhcCccccccCCC-CceeeE--EEEEeC-------------------CcEEEEecCCcc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRFG-------------------KDLEFLDSPGII 273 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~p-gtT~~~--~~~~~~-------------------~~~~liDTPGi~ 273 (323)
++.+|+++|.+|+|||||+|+|++... ....| |+|.++ ..+... .++.|+||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 356799999999999999999997532 22233 555542 222110 148999999974
No 373
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.58 E-value=4.4e-05 Score=68.51 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=63.0
Q ss_pred cccccchH-------HHHHHHHHHH----HhhcCeEEEEEeCCCCCCCCcHHHHHHhC--------CCCeEEEEeccCCc
Q 020622 100 VQWYPGHI-------AKTEKELKDQ----LKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMI 160 (323)
Q Consensus 100 i~~~PGh~-------~k~~~~l~~~----i~~aDlIl~VvDar~~~~~~~~~i~~~l~--------~k~~iiVlNK~DLl 160 (323)
+.++||.. .+..+.+... ...+|++|+|+|+.. ++..+..+.+++. ++|++++.||+|+.
T Consensus 74 liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 74 VVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp EEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 66778852 1122333333 389999999999874 4443444333332 56899999999996
Q ss_pred cHHh---H-----HHHHHHHHhhCceEEEecCcC-----CCcchhhhHHHHHhhh
Q 020622 161 SMAD---R-----NAWATYFAKQGTKVIFSNGQL-----GMGTMKLSRLAKALAS 202 (323)
Q Consensus 161 ~~~~---~-----~~~~~~~~~~g~~vi~iSa~~-----g~gi~~L~~~l~~l~~ 202 (323)
+... + ....+...++|..++++++.. +.|+.+|++.+.++..
T Consensus 153 ~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 153 GGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 5321 1 122334455666677666554 5778888887776654
No 374
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.54 E-value=3.4e-05 Score=74.97 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=34.1
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCccccccC------CCCcee-eEEEE--E---eCCcEEEEecCCccC
Q 020622 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------RPGVTR-VLKWV--R---FGKDLEFLDSPGIIP 274 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~~~v~~------~pgtT~-~~~~~--~---~~~~~~liDTPGi~~ 274 (323)
+..++|+|+|.+|+|||||+|+|.+......+. .+.|+. +...+ . ....+.++||||+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 346789999999999999999999865422210 111222 11111 1 112578999999964
No 375
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.54 E-value=0.00011 Score=63.82 Aligned_cols=80 Identities=9% Similarity=-0.022 Sum_probs=53.8
Q ss_pred hcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHH--hHHHHHHHHHhh--CceEEEecCcCCCcchhhhH
Q 020622 120 LMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 120 ~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~--~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~ 195 (323)
..+.+++|+|+..+.. .........++|.++|+||+|+.+.. +..+..+.+... +..++++|+++|.|+++|.+
T Consensus 129 ~~~~~i~vvd~~~~~~--~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD--VVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp SCSEEEEEEEGGGCTT--HHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHH
T ss_pred ccCcEEEEEeCCCcch--hhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHH
Confidence 4678999999876532 11110111268899999999997542 334444444443 36789999999999999988
Q ss_pred HHHHhh
Q 020622 196 LAKALA 201 (323)
Q Consensus 196 ~l~~l~ 201 (323)
.+.+..
T Consensus 207 ~l~~~~ 212 (221)
T 2wsm_A 207 FLRGIL 212 (221)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 376
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.50 E-value=3.8e-05 Score=82.81 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=36.2
Q ss_pred ccceEeeeecCCCCChhhHHHhhhcCcc----c-----------cccCCCCceeeEEEEEe---CCcEEEEecCCc
Q 020622 215 PRAVRAGIVGYPNVGKSSLINRLLKRRM----C-----------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (323)
Q Consensus 215 ~~~~~v~ivG~pNvGKSSLiN~L~~~~~----~-----------~v~~~pgtT~~~~~~~~---~~~~~liDTPGi 272 (323)
...++|+++|.+|+|||||+|+|++... . ......|+|.+...+.+ +..+.|+||||.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH 369 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH 369 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh
Confidence 3468999999999999999999986310 0 11234677777533332 457899999996
No 377
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.48 E-value=2.5e-05 Score=75.34 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=36.5
Q ss_pred CCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcchhhhH
Q 020622 147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 147 ~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
.+|+++|+||+|+.......++.+.+...+..++++||+.+.|+.+|.+
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 5899999999999854444445444444466899999999998877644
No 378
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.48 E-value=4.2e-05 Score=78.84 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=34.7
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc-----cc------cC------CCCceeeEEEEE---eCCcEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVR---FGKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~~---~~~~~~liDTPGi~~ 274 (323)
..+|+|+|.+|+|||||+|+|+..... .+ .+ ..|+|....... .+..+.|+||||...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 568999999999999999999842110 11 11 345665533222 245789999999853
No 379
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.46 E-value=0.00023 Score=60.81 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=53.0
Q ss_pred HhhcCeEEEEEeCCCCCCCCcH-H----HHHHh--CCCCeEEEEeccCCccHHh--HHHHHHHHHhhCceEEEecCcCCC
Q 020622 118 LKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM 188 (323)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~-~----i~~~l--~~k~~iiVlNK~DLl~~~~--~~~~~~~~~~~g~~vi~iSa~~g~ 188 (323)
...+|.+++|+|..+..+.... . +.... .+.|+++|.||+|+..... ..+...+....+..++.+||++|.
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 4668999999998654322111 1 11111 2579999999999975322 111112223345678999999999
Q ss_pred cchhhhHHHHHh
Q 020622 189 GTMKLSRLAKAL 200 (323)
Q Consensus 189 gi~~L~~~l~~l 200 (323)
|++++.+.+.+.
T Consensus 158 ~v~~lf~~l~~~ 169 (192)
T 2cjw_A 158 NVKELFEGIVRQ 169 (192)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999988766543
No 380
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.42 E-value=5.2e-05 Score=79.86 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
..+|+|+|.+|+|||||+|+|+...
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~ 43 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRA 43 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998653
No 381
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.40 E-value=5.4e-05 Score=76.81 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=29.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccc--------c------cCCCCceeeEEEEEe------C--CcEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVLKWVRF------G--KDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~--------v------~~~pgtT~~~~~~~~------~--~~~~liDTPGi~~ 274 (323)
..+|+++|.+|+|||||+++|+...... + ....|+|.....+.+ + ..+.|+||||...
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3579999999999999999998632111 0 112466665322222 1 2577999999853
No 382
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.39 E-value=0.0001 Score=77.71 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=54.6
Q ss_pred CcchhhHhhhcccccCccee--eee----------------ccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC
Q 020622 72 GSIEAYEEECDWADLDADLY--YWT----------------KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP 133 (323)
Q Consensus 72 ~~~~~~~e~e~~~~~~~~~~--~~~----------------~~l~~i~~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~ 133 (323)
+.|-...|++.++++..... .|. ...-.+-++||| .++.......+..+|.+|+|+|+..+
T Consensus 56 ~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 56 FTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGH-VDFSSEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp -----------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCC-CSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred eecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCc-hhhHHHHHHHHHhCCEEEEEEeCCCC
Confidence 34444456666677766543 332 111126789999 45667788889999999999999987
Q ss_pred CCCCcHHHHHHh--CCCCeEEEEeccCCcc
Q 020622 134 LSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (323)
Q Consensus 134 ~~~~~~~i~~~l--~~k~~iiVlNK~DLl~ 161 (323)
.......+.... .+.|+++|+||+|+..
T Consensus 135 ~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 135 VCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 655444332222 3789999999999873
No 383
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.38 E-value=0.00017 Score=68.55 Aligned_cols=79 Identities=8% Similarity=0.073 Sum_probs=43.8
Q ss_pred CeEEEEEeC-CCCCCCCcHHHHHHhC-CCCeEEEEeccCCccHHhHHHHH----HHHHhhCceEEEecCcCCCcchhhhH
Q 020622 122 DVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 122 DlIl~VvDa-r~~~~~~~~~i~~~l~-~k~~iiVlNK~DLl~~~~~~~~~----~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
|++++++|. +.++...+..+...+. +.|+|+|+||+|+.+..++..+. +.+...+..++.+|++.+.+-+.+..
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~ 226 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKE 226 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHH
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHH
Confidence 568888875 5555544544555554 67999999999999876654432 22333457789999999988333334
Q ss_pred HHHHh
Q 020622 196 LAKAL 200 (323)
Q Consensus 196 ~l~~l 200 (323)
++..+
T Consensus 227 l~~~i 231 (361)
T 2qag_A 227 QTRLL 231 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 384
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.37 E-value=0.00013 Score=75.40 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=38.8
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc-----cc------cC------CCCceeeEEEEEe---C-------CcEEEEec
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVRF---G-------KDLEFLDS 269 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~~~---~-------~~~~liDT 269 (323)
..+|+|+|.+|+|||||+++|+..... .+ .+ ..|+|.......+ + ..+.|+||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 457999999999999999999753210 01 11 2466665432222 2 56889999
Q ss_pred CCccC
Q 020622 270 PGIIP 274 (323)
Q Consensus 270 PGi~~ 274 (323)
||...
T Consensus 90 PG~~d 94 (704)
T 2rdo_7 90 PGHVD 94 (704)
T ss_pred CCccc
Confidence 99863
No 385
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.37 E-value=8e-05 Score=64.86 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
..+|+++|.+|||||||+|+|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 386
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.35 E-value=0.0001 Score=73.25 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.0
Q ss_pred cceEeeeecCCCCChhhHHHhhh------cCcccccc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLL------KRRMCPAA 246 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~------~~~~~~v~ 246 (323)
.+..|+|+|.+||||||++|.|. ++++..++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35679999999999999999998 55544443
No 387
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.34 E-value=0.00015 Score=68.19 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=36.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCccccccCCCCceeeEEEEEe--CCcEEEEecCCccCC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~~v~~~pgtT~~~~~~~~--~~~~~liDTPGi~~~ 275 (323)
||+++|.+|||||||++.+.+..........+.|.......+ .-++.|+||||--..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhc
Confidence 478999999999999998875432211112334443322222 246899999997643
No 388
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.33 E-value=5.9e-05 Score=71.26 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhh-cCeEEEEEeCCCCCCCCcH-HHHHHhC--CCCeEEEEeccCCccHHh-HHHHHHH-H--HhhC-ceE
Q 020622 109 KTEKELKDQLKL-MDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-F--AKQG-TKV 179 (323)
Q Consensus 109 k~~~~l~~~i~~-aDlIl~VvDar~~~~~~~~-~i~~~l~--~k~~iiVlNK~DLl~~~~-~~~~~~~-~--~~~g-~~v 179 (323)
+..+.+...+.. .++|++|+|+...+...+. .+.+.+. ++++++|+||+|+.+... ...+.+. . .+.+ ..+
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v 234 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 234 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence 344455556644 4577778888766555443 2555554 689999999999986543 1222110 0 0123 256
Q ss_pred EEecCcCCCcchhhhHHHHH
Q 020622 180 IFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~ 199 (323)
+.+||+++.|+++|.+.+.+
T Consensus 235 ~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 235 VNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCCCHHHHHTTCCHHHHHHH
T ss_pred EeCCcccccccccHHHHHHH
Confidence 78999999999998887655
No 389
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.29 E-value=6.6e-05 Score=67.58 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.3
Q ss_pred ccceEeeeecCC---------CCChhhHHHhhhcC
Q 020622 215 PRAVRAGIVGYP---------NVGKSSLINRLLKR 240 (323)
Q Consensus 215 ~~~~~v~ivG~p---------NvGKSSLiN~L~~~ 240 (323)
...++|+++|.+ |||||||+|+|.+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 346899999999 99999999999974
No 390
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.29 E-value=6.1e-05 Score=76.41 Aligned_cols=58 Identities=26% Similarity=0.365 Sum_probs=32.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCcccc--------c------cCCCCceeeE---EEEEe---C--CcEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVL---KWVRF---G--KDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~~--------v------~~~pgtT~~~---~~~~~---~--~~~~liDTPGi~~ 274 (323)
..+|+++|.+|+|||||+|+|+...... + ....|+|... ...+. + ..+.|+||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4579999999999999999998632111 0 1124566542 22121 1 2477999999864
No 391
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.21 E-value=0.00033 Score=59.83 Aligned_cols=86 Identities=13% Similarity=-0.014 Sum_probs=56.4
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCeEEEEeccCCccHHh--HHHHHHHHHhhCceEEEecCcCC
Q 020622 116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (323)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~~~~~~g~~vi~iSa~~g 187 (323)
.....+|.+++|+|.....+..+. .+...+ .+.++++|+||+|+.+... .........+.+..++.+|++++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS 152 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 445789999999998765432221 111111 2568999999999975321 12222334445677888999999
Q ss_pred CcchhhhHHHHHhh
Q 020622 188 MGTMKLSRLAKALA 201 (323)
Q Consensus 188 ~gi~~L~~~l~~l~ 201 (323)
.|++++.+.+.+..
T Consensus 153 ~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 153 TNVEEAFKNILTEI 166 (199)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999888776543
No 392
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.18 E-value=3e-05 Score=67.84 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=38.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCcc-ccccCCCCceeeEEEEEe-CCcEEEEecCCcc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~-~~v~~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (323)
-++|+|.+|+|||||+|.|++... ......+.|||....-.. +.++.++|...|.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMT 77 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhh
Confidence 489999999999999999997543 234566788887542222 4556667766653
No 393
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.17 E-value=5.5e-05 Score=67.52 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=25.6
Q ss_pred ceEeeeecCCCCChhhHHHhhh-----cCccccccCCC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRP 249 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~-----~~~~~~v~~~p 249 (323)
...++++|.+|||||||+|.|. +++...+..-|
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4568999999999999999998 66655554334
No 394
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.07 E-value=0.0013 Score=56.93 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=50.1
Q ss_pred cCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHH--hHHHHHHHHHhh--CceEEEecCcCCCcchhhhHH
Q 020622 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRL 196 (323)
Q Consensus 121 aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~--~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~~ 196 (323)
.+.++.|+|+..+....... ... ..++.++|+||+|+.+.. ...+..+.+... +..++.+||++|.|+++|.+.
T Consensus 140 ~~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp CSEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHH
T ss_pred cCcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHH
Confidence 45677888864332221111 111 268899999999997642 233344444433 467899999999999998887
Q ss_pred HHHh
Q 020622 197 AKAL 200 (323)
Q Consensus 197 l~~l 200 (323)
+.+.
T Consensus 218 l~~~ 221 (226)
T 2hf9_A 218 IEKS 221 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 395
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.01 E-value=0.00094 Score=65.35 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=39.2
Q ss_pred eEeeeecCCCCChhhHHHhhhc-----------------CccccccCC-CCceeeE-EEE---Ee----CC--cEEEEec
Q 020622 218 VRAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPR-PGVTRVL-KWV---RF----GK--DLEFLDS 269 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~-----------------~~~~~v~~~-pgtT~~~-~~~---~~----~~--~~~liDT 269 (323)
.-|+|+|.+++|||+|+|.|++ ...+.+++. -.+|+.+ .|. .. +. .+.|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 3478999999999999997652 123444332 2366664 231 11 22 3889999
Q ss_pred CCccCCCCC
Q 020622 270 PGIIPMRIS 278 (323)
Q Consensus 270 PGi~~~~~~ 278 (323)
.|+.....+
T Consensus 148 EG~~d~~~~ 156 (457)
T 4ido_A 148 QGTFDSQST 156 (457)
T ss_dssp CCBTCTTCC
T ss_pred cCCCCcccC
Confidence 999866543
No 396
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.01 E-value=0.00078 Score=67.60 Aligned_cols=73 Identities=21% Similarity=0.126 Sum_probs=50.8
Q ss_pred cccccchHHH----------HHHHHHHHHhhcCeEEEEEeCCCC-CCCCcHHHHHHhC--CCCeEEEEeccCCccHHhHH
Q 020622 100 VQWYPGHIAK----------TEKELKDQLKLMDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRN 166 (323)
Q Consensus 100 i~~~PGh~~k----------~~~~l~~~i~~aDlIl~VvDar~~-~~~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~ 166 (323)
+-++||+... +.+.+...+..+|+||+|+|+... ....+..+.+.+. +.++++|+||+|+++..++.
T Consensus 158 lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~ 237 (550)
T 2qpt_A 158 IIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLM 237 (550)
T ss_dssp EEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHH
T ss_pred EEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHH
Confidence 5578888531 345556778999999999999763 3333444555554 46899999999999877655
Q ss_pred HHHHHH
Q 020622 167 AWATYF 172 (323)
Q Consensus 167 ~~~~~~ 172 (323)
.....+
T Consensus 238 ~~~~~l 243 (550)
T 2qpt_A 238 RVYGAL 243 (550)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544433
No 397
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.96 E-value=0.00093 Score=62.38 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHhCCCCeEEEEeccCCccHHhHHHHHHHHHhhCceEEEecCcCCCcchhhhHHHHHhhhh-hhhhhccCCCCccce
Q 020622 140 LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD-VNVKRRSKGLLPRAV 218 (323)
Q Consensus 140 ~i~~~l~~k~~iiVlNK~DLl~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~-~~~~~~~~~~~~~~~ 218 (323)
.+.+++......+|++|-|..+.. ..+..++.+..++.++..+...+..|..++...... ...+... ..-...
T Consensus 72 rler~l~~~~P~IIltrg~~~pee----lie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~--v~~~g~ 145 (314)
T 1ko7_A 72 RMRKLCRPETPAIIVTRDLEPPEE----LIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVL--VDVYGV 145 (314)
T ss_dssp HHHHHCCTTCCCEEECTTCCCCHH----HHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEE--EEETTE
T ss_pred HHHHHhcCCCCEEEEeCCCCCCHH----HHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEE--EEECCE
Confidence 355566666778889999988654 344455567888888888877777777776543211 0000000 000134
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
-++|+|.+|+||||+.+.|.++.
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998753
No 398
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.87 E-value=0.00079 Score=69.04 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=37.7
Q ss_pred ceEeeeecCCCCChhhHHHhhhcCccc-----cc------cC------CCCceeeEEEEE---eCCcEEEEecCCccC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVR---FGKDLEFLDSPGIIP 274 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~~~~-----~v------~~------~pgtT~~~~~~~---~~~~~~liDTPGi~~ 274 (323)
..+|+++|.+|+|||||+|+|++.... .+ .+ ..|+|...+... ....+.|+||||...
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 457999999999999999999843211 00 11 124454433322 244688999999753
No 399
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.80 E-value=0.00076 Score=63.63 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=56.3
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCC-C-CCcHHHHHHhC--CCCeEEEEeccCCccHHhHHHHHHHHH----hhCceEEEe
Q 020622 111 EKELKDQLKLMDVVIEVRDARIPL-S-TTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA----KQGTKVIFS 182 (323)
Q Consensus 111 ~~~l~~~i~~aDlIl~VvDar~~~-~-~~~~~i~~~l~--~k~~iiVlNK~DLl~~~~~~~~~~~~~----~~g~~vi~i 182 (323)
...+...+.++|+||+++|+.... . .....+...+. ++++++|+||+|+++.... +.+.+. .++..++.+
T Consensus 163 ~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcCccccccCCeEEE
Confidence 555667789999999999864322 2 22233444443 5799999999999875431 112222 234567889
Q ss_pred cCcCCCcchhhhHHHHH
Q 020622 183 NGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 183 Sa~~g~gi~~L~~~l~~ 199 (323)
++..+.++++.......
T Consensus 241 ~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 241 VNRSQADINKNVDMIAA 257 (360)
T ss_dssp CCCCHHHHHTTCCHHHH
T ss_pred EECChHHhccCCCHHHH
Confidence 99998888776555433
No 400
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.69 E-value=0.0021 Score=60.31 Aligned_cols=84 Identities=14% Similarity=0.032 Sum_probs=50.8
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCeEEEEeccCCccHH-hHHHHHHHHHh----h-------CceEEEecC
Q 020622 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA-DRNAWATYFAK----Q-------GTKVIFSNG 184 (323)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~iiVlNK~DLl~~~-~~~~~~~~~~~----~-------g~~vi~iSa 184 (323)
..+.+|++++|+|+..+... ..+...+...+.++++||+|+.+.. ......+.+.. . ..+++++|+
T Consensus 165 v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sa 242 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISG 242 (337)
T ss_dssp HHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBT
T ss_pred HHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeC
Confidence 35799999999997533210 0010001124668888999986532 22222222221 1 246899999
Q ss_pred cCCCcchhhhHHHHHhhh
Q 020622 185 QLGMGTMKLSRLAKALAS 202 (323)
Q Consensus 185 ~~g~gi~~L~~~l~~l~~ 202 (323)
+++.|+++|.+.+.++..
T Consensus 243 l~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 243 LHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998877654
No 401
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.63 E-value=0.00046 Score=67.21 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
+..|+++|.+||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999975
No 402
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.00037 Score=58.73 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=41.3
Q ss_pred cccccchHH---HHHHHHHHHHhhcCeEEEEEeCC-CCCCCC--cHHHHHHh--------CCCCeEEEEeccCCccHHhH
Q 020622 100 VQWYPGHIA---KTEKELKDQLKLMDVVIEVRDAR-IPLSTT--HPLMDQWL--------GNRKRILVLNREDMISMADR 165 (323)
Q Consensus 100 i~~~PGh~~---k~~~~l~~~i~~aDlIl~VvDar-~~~~~~--~~~i~~~l--------~~k~~iiVlNK~DLl~~~~~ 165 (323)
+-++||+.. .....+...+..+|++|+|+|+. ...+.. ...+..++ .+.|+++|+||+|+.+....
T Consensus 95 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 95 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 445676621 12233344456699999999987 221110 01122222 26899999999999876544
Q ss_pred HHHHHH
Q 020622 166 NAWATY 171 (323)
Q Consensus 166 ~~~~~~ 171 (323)
.+..+.
T Consensus 175 ~~~~~~ 180 (193)
T 2ged_A 175 SKIKDA 180 (193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 403
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.49 E-value=0.00041 Score=65.84 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=58.1
Q ss_pred ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---------CCcH---HHHHHh-----CCCCeEEEEeccCCccHH--
Q 020622 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTHP---LMDQWL-----GNRKRILVLNREDMISMA-- 163 (323)
Q Consensus 103 ~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~~---------~~~~---~i~~~l-----~~k~~iiVlNK~DLl~~~-- 163 (323)
.+|+ ..+.+......+.++.||+|+|..+... ..+. .+...+ .+.|+++++||+||....
T Consensus 200 t~GQ-e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~ 278 (353)
T 1cip_A 200 VGGQ-RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 278 (353)
T ss_dssp ECCS-GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHT
T ss_pred CCCc-hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhcc
Confidence 4454 3344444455689999999999875321 1111 111222 357899999999985321
Q ss_pred ---------------hHHHHHHHHH----h-------hCceEEEecCcCCCcchhhhHHHHHh
Q 020622 164 ---------------DRNAWATYFA----K-------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 164 ---------------~~~~~~~~~~----~-------~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
...+..+++. + .+..++.+||+++.|+.++.+.+...
T Consensus 279 ~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 279 KSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp TSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 1122222232 1 23567889999999998887765543
No 404
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.49 E-value=0.0036 Score=57.78 Aligned_cols=77 Identities=6% Similarity=0.019 Sum_probs=40.0
Q ss_pred cCeEEEEEeCC-CCCCCCcHHHHHHhC-CCCeEEEEeccCCccHHhHH----HHHHHHHhhCceEEEecCcCCCcchhhh
Q 020622 121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 121 aDlIl~VvDar-~~~~~~~~~i~~~l~-~k~~iiVlNK~DLl~~~~~~----~~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (323)
+++++++++.. .++...+.++...+. ..++++|+||+|+....++. +..+++...+..++.+||+++ |++++.
T Consensus 127 a~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f 205 (301)
T 2qnr_A 127 VHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDF 205 (301)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------C
T ss_pred hhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHH
Confidence 34466665532 223332323333333 46899999999998765432 233445556778899999999 998876
Q ss_pred HHHH
Q 020622 195 RLAK 198 (323)
Q Consensus 195 ~~l~ 198 (323)
..+.
T Consensus 206 ~~l~ 209 (301)
T 2qnr_A 206 KEQT 209 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 405
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.30 E-value=0.0026 Score=64.47 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.5
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|||.+|+|||||+|+|.|-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 3899999999999999999985
No 406
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.30 E-value=0.0012 Score=55.90 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=25.4
Q ss_pred EeeeecCCCCChhhHHHhhhcCccc-cccCCCCceee
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRV 254 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~-~v~~~pgtT~~ 254 (323)
.++|+|.+|+|||||+|.|.+.... .......||+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~ 43 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRP 43 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCC
Confidence 4899999999999999999874321 12334445554
No 407
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.29 E-value=0.0037 Score=60.59 Aligned_cols=77 Identities=9% Similarity=-0.003 Sum_probs=40.8
Q ss_pred cCeEEEEEeCC-CCCCCCcHHHHHHhC-CCCeEEEEeccCCccHHhHHH----HHHHHHhhCceEEEecCcCCCcchhhh
Q 020622 121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (323)
Q Consensus 121 aDlIl~VvDar-~~~~~~~~~i~~~l~-~k~~iiVlNK~DLl~~~~~~~----~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (323)
++++|++++.. .++...+..+...+. +.++|+|+||+|+++..++.. ..+.+...+..++.+|++++.++.++.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~ 218 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 218 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHH
Confidence 45566666553 445444444444444 678999999999998766543 334445567788889999988887654
Q ss_pred HHH
Q 020622 195 RLA 197 (323)
Q Consensus 195 ~~l 197 (323)
..+
T Consensus 219 ~~l 221 (418)
T 2qag_C 219 KKI 221 (418)
T ss_dssp ---
T ss_pred HHH
Confidence 433
No 408
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.23 E-value=0.0014 Score=62.43 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=55.3
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---------CCCcH---HHHHHh-----CCCCeEEEEeccCCccHH-
Q 020622 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---------STTHP---LMDQWL-----GNRKRILVLNREDMISMA- 163 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~---------~~~~~---~i~~~l-----~~k~~iiVlNK~DLl~~~- 163 (323)
+.+|+ ..+.+......+.++.||+|+|..+.. .+.+. .+...+ .+.|+|+++||+||....
T Consensus 207 Dt~Gq-~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki 285 (362)
T 1zcb_A 207 DVGGQ-RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV 285 (362)
T ss_dssp EECC--------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT
T ss_pred eccch-hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhc
Confidence 45666 444444445568999999999987631 01111 111222 357899999999986321
Q ss_pred -----------------hHHHHHHHH----H-------hhCceEEEecCcCCCcchhhhHHHHHh
Q 020622 164 -----------------DRNAWATYF----A-------KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (323)
Q Consensus 164 -----------------~~~~~~~~~----~-------~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (323)
...+..+++ . ..+..++++||+++.|+.++.+.+.+.
T Consensus 286 ~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 286 QVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp TTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 122222222 1 123567889999999998887765543
No 409
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.15 E-value=0.011 Score=52.31 Aligned_cols=89 Identities=9% Similarity=-0.079 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCC-CcHHH---HHHh------CCCCeEEEEecc-CCccHHhHHHHHHHH--Hh
Q 020622 108 AKTEKELKDQLKLMDVVIEVRDARIPLST-THPLM---DQWL------GNRKRILVLNRE-DMISMADRNAWATYF--AK 174 (323)
Q Consensus 108 ~k~~~~l~~~i~~aDlIl~VvDar~~~~~-~~~~i---~~~l------~~k~~iiVlNK~-DLl~~~~~~~~~~~~--~~ 174 (323)
.+++..-+...+++|.||+|||+.+.... ...++ ..++ .+.|++|..||. |+...-...+..+.+ .+
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~ 192 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 192 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC
Confidence 44443444677999999999999765321 12233 2222 245888899995 664322222222222 11
Q ss_pred h--CceEEEecCcCCCcchhhhHH
Q 020622 175 Q--GTKVIFSNGQLGMGTMKLSRL 196 (323)
Q Consensus 175 ~--g~~vi~iSa~~g~gi~~L~~~ 196 (323)
. ...+..+||.+|+|+.+=.+.
T Consensus 193 l~R~W~Iq~csA~TGeGL~EGLdW 216 (227)
T 3l82_B 193 LNHPWLVQDTEAETLTGFLNGIEW 216 (227)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHH
T ss_pred CCCCEEEEEeECCCCcCHHHHHHH
Confidence 1 246889999999997664444
No 410
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.09 E-value=0.01 Score=50.21 Aligned_cols=84 Identities=14% Similarity=0.020 Sum_probs=54.0
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCeEEEEeccCCccHHh--HHHHHHHHHhhCceEEEecCcCC
Q 020622 116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (323)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~iiVlNK~DLl~~~~--~~~~~~~~~~~g~~vi~iSa~~g 187 (323)
.....+|.+++|+|.....+..+. .+...+ .+.++++|+||+|+.+... .........+.+..++.+|++++
T Consensus 97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS 176 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 345778999999998654322111 111111 2568999999999975321 12222334445667888999999
Q ss_pred CcchhhhHHHHH
Q 020622 188 MGTMKLSRLAKA 199 (323)
Q Consensus 188 ~gi~~L~~~l~~ 199 (323)
.|++++.+.+.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999998877654
No 411
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.05 E-value=0.0051 Score=57.78 Aligned_cols=80 Identities=6% Similarity=-0.031 Sum_probs=48.6
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------CCCCeEEEEeccCCccHHhH----HH----HHHHHHh-----
Q 020622 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADR----NA----WATYFAK----- 174 (323)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~~k~~iiVlNK~DLl~~~~~----~~----~~~~~~~----- 174 (323)
....+.++.+|+|+|..+.....-..+.+++ .+.|+++|.||+||.+.+++ ++ ..+.+.+
T Consensus 67 ~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~ 146 (331)
T 3r7w_B 67 ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG 146 (331)
T ss_dssp HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence 4557899999999999876111111222222 36789999999999865321 11 1122333
Q ss_pred hCceEEEecCcCCCcchhhhH
Q 020622 175 QGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~ 195 (323)
.+..++.+||+. .++.+...
T Consensus 147 ~~i~f~eTSAkd-~nV~eAFs 166 (331)
T 3r7w_B 147 VQVSFYLTSIFD-HSIYEAFS 166 (331)
T ss_dssp CCEEEECCCSSS-SHHHHHHH
T ss_pred cCceEEEeccCC-CcHHHHHH
Confidence 245678899987 46665433
No 412
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.95 E-value=0.011 Score=57.63 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred cceEeeeecCCCCChhhHHHhhh
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLL 238 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~ 238 (323)
.+..|+++|.+|+||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 36679999999999999999987
No 413
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.88 E-value=0.0033 Score=60.65 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCc--HHHH----HHh-----CCCCeEEEEeccCCcc
Q 020622 108 AKTEKELKDQLKLMDVVIEVRDARIPL------STTH--PLMD----QWL-----GNRKRILVLNREDMIS 161 (323)
Q Consensus 108 ~k~~~~l~~~i~~aDlIl~VvDar~~~------~~~~--~~i~----~~l-----~~k~~iiVlNK~DLl~ 161 (323)
.++.+......+.++.+|+|+|..+.. ...+ .+.. ..+ .+.|++||+||+||..
T Consensus 228 e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 228 RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence 445554455678999999999987510 0011 1111 222 2468999999999853
No 414
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.81 E-value=0.0053 Score=61.47 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=35.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCccc---------------cccC------CCCceee---EEEEEeCCcEEEEecCCccC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMC---------------PAAP------RPGVTRV---LKWVRFGKDLEFLDSPGIIP 274 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~---------------~v~~------~pgtT~~---~~~~~~~~~~~liDTPGi~~ 274 (323)
+|+|+|...+|||||.-+|+-.... .+.+ .-|+|.. ....+.+..+.||||||-..
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999998732110 1111 1254443 23344466789999999975
Q ss_pred C
Q 020622 275 M 275 (323)
Q Consensus 275 ~ 275 (323)
.
T Consensus 113 F 113 (548)
T 3vqt_A 113 F 113 (548)
T ss_dssp C
T ss_pred H
Confidence 4
No 415
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.80 E-value=0.0033 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
+++++|.+|+|||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 416
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.72 E-value=0.0029 Score=54.49 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.4
Q ss_pred eeeecCCCCChhhHHHhhhcC
Q 020622 220 AGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~ 240 (323)
|+|+|.+||||+||++.|+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999865
No 417
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.69 E-value=0.0039 Score=58.45 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=58.5
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCC-------CCCCCCcH------HHHHHh-----CCCCeEEEEeccCCccHH
Q 020622 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDAR-------IPLSTTHP------LMDQWL-----GNRKRILVLNREDMISMA 163 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar-------~~~~~~~~------~i~~~l-----~~k~~iiVlNK~DLl~~~ 163 (323)
|.-|.+.++.+......+.++.+|+|+|.. +. +..+. .+...+ .+.|+++++||+||....
T Consensus 172 wDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~-~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k 250 (327)
T 3ohm_A 172 VDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES-DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK 250 (327)
T ss_dssp EEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSC-TTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHH
T ss_pred EEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccccc-ccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhh
Confidence 333444556555556678999999999764 11 11111 122222 257899999999986532
Q ss_pred ------------------hHHHHHHHHH----------hhCceEEEecCcCCCcchhhhHHHHH
Q 020622 164 ------------------DRNAWATYFA----------KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 164 ------------------~~~~~~~~~~----------~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
..++..+++. +.+..++++||+++.|+..+.+.+..
T Consensus 251 i~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 251 IMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp TTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 1222223321 12345788999999999887766554
No 418
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.66 E-value=0.0038 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.9
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|+|.+|+|||||+|.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999863
No 419
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.64 E-value=0.0047 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
-++|+|.+|+|||||++.|.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48999999999999999998764
No 420
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.61 E-value=0.0028 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEeeeecCCCCChhhHHHhhhcC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
..|+|+|.||+|||||.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999999864
No 421
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.53 E-value=0.0032 Score=59.67 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCc--HH----HHHHh-----CCCCeEEEEeccCCccHH-------
Q 020622 108 AKTEKELKDQLKLMDVVIEVRDARIPL------STTH--PL----MDQWL-----GNRKRILVLNREDMISMA------- 163 (323)
Q Consensus 108 ~k~~~~l~~~i~~aDlIl~VvDar~~~------~~~~--~~----i~~~l-----~~k~~iiVlNK~DLl~~~------- 163 (323)
.++.+......+.++.+|+|+|..... ...+ .+ +.... .+.|+++|+||+||....
T Consensus 194 e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~ 273 (354)
T 2xtz_A 194 RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLN 273 (354)
T ss_dssp TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGG
T ss_pred hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccccccc
Confidence 444444445568899999999975100 0111 11 11122 256899999999985321
Q ss_pred ----------------hHHHHHHH----HHh------------hCceEEEecCcCCCcchhhhHHHHH
Q 020622 164 ----------------DRNAWATY----FAK------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (323)
Q Consensus 164 ----------------~~~~~~~~----~~~------------~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (323)
..++-.++ |.+ ....++.+||+++.|+.++.+.+.+
T Consensus 274 ~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 274 VCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp GSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 11122222 211 1234678999999999887766544
No 422
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.42 E-value=0.0027 Score=64.73 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=37.3
Q ss_pred EeeeecCCCCChhhHHHhhhcCccc-----c------ccCC------CCceeeEE---EEEeCCcEEEEecCCccCC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRRMC-----P------AAPR------PGVTRVLK---WVRFGKDLEFLDSPGIIPM 275 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~~~-----~------v~~~------pgtT~~~~---~~~~~~~~~liDTPGi~~~ 275 (323)
||+|+|...+|||||..+|+..... . +.+. -|+|.... ..+.+..+.||||||-...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 5899999999999999998732111 1 1111 15555432 2333667889999998743
No 423
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.37 E-value=0.017 Score=51.86 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=38.7
Q ss_pred cccccchH------HHHHHHHHHHH--hhcCeEEEEEeCCCC-CCCCcHHHHHHh----CC---CCeEEEEeccCCccHH
Q 020622 100 VQWYPGHI------AKTEKELKDQL--KLMDVVIEVRDARIP-LSTTHPLMDQWL----GN---RKRILVLNREDMISMA 163 (323)
Q Consensus 100 i~~~PGh~------~k~~~~l~~~i--~~aDlIl~VvDar~~-~~~~~~~i~~~l----~~---k~~iiVlNK~DLl~~~ 163 (323)
+-++||+. ..+.+.+...+ ..+|++|+|+|.... +...+..+...+ +. +|+++|+||+|+.+.+
T Consensus 91 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 91 IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred EEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 55678873 23334443332 379999999887532 222233333333 21 5899999999998654
No 424
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.36 E-value=0.0045 Score=54.54 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
-++|+|.+|+|||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999998754
No 425
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.34 E-value=0.013 Score=55.24 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=38.1
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCcH--H----HHHH-----hCCCCeEEEEeccCCcc
Q 020622 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTHP--L----MDQW-----LGNRKRILVLNREDMIS 161 (323)
Q Consensus 102 ~~PGh~~k~~~~l~~~i~~aDlIl~VvDar~~~------~~~~~--~----i~~~-----l~~k~~iiVlNK~DLl~ 161 (323)
|.-|.+.++.+......+.++.||+|+|..... ...+. + +... +.+.|+++++||+||..
T Consensus 166 wDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 166 IDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp EECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred ccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 333444667766667789999999999986210 01111 1 1111 13578999999999865
No 426
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.30 E-value=0.0085 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEeeeecCCCCChhhHHHhhhcC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
-.++++|.+|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999874
No 427
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.22 E-value=0.0066 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
-++|+|.+|+|||||+|.|.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3799999999999999999864
No 428
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.14 E-value=0.0072 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.9
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
-++++|.+|+|||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 429
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.14 E-value=0.0096 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.6
Q ss_pred ceEeeeecCCCCChhhHHHhhhc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
+..++|+|.+|+|||||++.|.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999875
No 430
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.11 E-value=0.0075 Score=52.71 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.0
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|+|.+|+|||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999874
No 431
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.04 E-value=0.008 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.3
Q ss_pred eeeecCCCCChhhHHHhhhcC
Q 020622 220 AGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~ 240 (323)
++|+|.+|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 432
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.82 E-value=0.025 Score=56.00 Aligned_cols=77 Identities=18% Similarity=0.115 Sum_probs=48.2
Q ss_pred hcCeEEEEEeCCCCCCCCcHHHHHHhC-CCCe-EEEEeccCCccHHhHHHHHHHHHhhCce------------------E
Q 020622 120 LMDVVIEVRDARIPLSTTHPLMDQWLG-NRKR-ILVLNREDMISMADRNAWATYFAKQGTK------------------V 179 (323)
Q Consensus 120 ~aDlIl~VvDar~~~~~~~~~i~~~l~-~k~~-iiVlNK~DLl~~~~~~~~~~~~~~~g~~------------------v 179 (323)
.+|.+++|+|+..+.. ...+...+. ..++ ++|+||+|....... ..+.....+.+ .
T Consensus 213 ~pd~vllVvDa~~g~~--~~~~a~~~~~~~~i~gvVlNK~D~~~~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~ 288 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--CEAQAKAFKDKVDVASVIVTKLDGHAKGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQ 288 (504)
T ss_dssp CCSEEEEEEETTCCTT--HHHHHHHHHHHHCCCCEEEECTTSCCCCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHH
T ss_pred cCceEEEEEecccccc--HHHHHHHHHhhcCceEEEEeCCccccchHH--HHHHHHHhCCCeEEeccccchhhhhccCcc
Confidence 7899999999987643 333333332 3564 899999998754321 11111222222 2
Q ss_pred EEecCcCCCc-chhhhHHHHHh
Q 020622 180 IFSNGQLGMG-TMKLSRLAKAL 200 (323)
Q Consensus 180 i~iSa~~g~g-i~~L~~~l~~l 200 (323)
+++|+..|.| +.+|.+.+.+.
T Consensus 289 ~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 289 PFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHHCCCTTTTTTTTHHHHTTT
T ss_pred eeeehhcCCCcHHHHHHHHHHH
Confidence 3568888988 88888776654
No 433
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.77 E-value=0.011 Score=49.36 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=17.6
Q ss_pred EeeeecCCCCChhhHHHhhh
Q 020622 219 RAGIVGYPNVGKSSLINRLL 238 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~ 238 (323)
-++++|.+|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999644
No 434
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.75 E-value=0.012 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 38999999999999999999754
No 435
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.71 E-value=0.011 Score=50.18 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.8
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|+|.+|+|||||+|.|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4799999999999999999863
No 436
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.69 E-value=0.012 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999753
No 437
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.65 E-value=0.014 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.0
Q ss_pred eEeeeecCCCCChhhHHHhhhcCc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
..++|+|.+|+||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 358999999999999999998653
No 438
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.64 E-value=0.04 Score=50.88 Aligned_cols=88 Identities=9% Similarity=-0.046 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCC-cHHHH---HH------hCCCCeEEEEec-cCCccHHhHHHHHHHH--Hhh-
Q 020622 110 TEKELKDQLKLMDVVIEVRDARIPLSTT-HPLMD---QW------LGNRKRILVLNR-EDMISMADRNAWATYF--AKQ- 175 (323)
Q Consensus 110 ~~~~l~~~i~~aDlIl~VvDar~~~~~~-~~~i~---~~------l~~k~~iiVlNK-~DLl~~~~~~~~~~~~--~~~- 175 (323)
++..-+...+++|.||+|||+.+...-. ..++. .+ +.+.|++|..|| -|+...-...+..+.+ .+.
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~ 279 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 279 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCC
Confidence 3333446678999999999996654211 11221 11 346789999997 5775322222222222 111
Q ss_pred -CceEEEecCcCCCcchhhhHHH
Q 020622 176 -GTKVIFSNGQLGMGTMKLSRLA 197 (323)
Q Consensus 176 -g~~vi~iSa~~g~gi~~L~~~l 197 (323)
...+..+||.+|+|+.+=.+.+
T Consensus 280 r~W~Iq~csA~tGeGL~EGldWL 302 (312)
T 3l2o_B 280 HPWLVQDTEAETLTGFLNGIEWI 302 (312)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHH
T ss_pred CcEEEEecccCCCcCHHHHHHHH
Confidence 2458899999999987655543
No 439
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.60 E-value=0.014 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
+..|+++|.+|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 440
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.50 E-value=0.015 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.8
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 441
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.48 E-value=0.014 Score=49.20 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.2
Q ss_pred EeeeecCCCCChhhHHHhhhc
Q 020622 219 RAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~ 239 (323)
.++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999975
No 442
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.43 E-value=0.014 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.8
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.|+++|.+|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 443
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.41 E-value=0.016 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999753
No 444
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.40 E-value=0.015 Score=53.97 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.0
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|+|.+|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999999863
No 445
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.39 E-value=0.017 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.8
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 446
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.39 E-value=0.02 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred eEeeeecCCCCChhhHHHhhhc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 447
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.37 E-value=0.016 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999753
No 448
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.34 E-value=0.016 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999753
No 449
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.33 E-value=0.018 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 450
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.29 E-value=0.017 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.8
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999753
No 451
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.29 E-value=0.017 Score=50.58 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.2
Q ss_pred eeeecCCCCChhhHHHhhhcCc
Q 020622 220 AGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 220 v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
++++|.+|+|||||++.|.+-.
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999999753
No 452
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.29 E-value=0.017 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 38999999999999999999853
No 453
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.27 E-value=0.013 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=15.0
Q ss_pred EeeeecCCCCChhhHHHhhh-cC
Q 020622 219 RAGIVGYPNVGKSSLINRLL-KR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~-~~ 240 (323)
-++|+|.+|+|||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999999 64
No 454
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.22 E-value=0.018 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999999753
No 455
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.20 E-value=0.019 Score=49.08 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.6
Q ss_pred eEeeeecCCCCChhhHHHhhhc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
..++++|.+|+|||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 456
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.19 E-value=0.017 Score=52.16 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.5
Q ss_pred EeeeecCCCCChhhHHHhhhc
Q 020622 219 RAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~ 239 (323)
.++|+|.+|+|||||++.|.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 489999999999999999986
No 457
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.18 E-value=0.019 Score=51.06 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999753
No 458
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.17 E-value=0.019 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.3
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++++|.+|+|||||++.|.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999984
No 459
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.17 E-value=0.017 Score=50.29 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=20.4
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++++|.+|+|||||++.|.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999986
No 460
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.16 E-value=0.021 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.1
Q ss_pred ceEeeeecCCCCChhhHHHhhh
Q 020622 217 AVRAGIVGYPNVGKSSLINRLL 238 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~ 238 (323)
+..++|+|.+|+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999998
No 461
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.14 E-value=0.019 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48999999999999999999753
No 462
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.12 E-value=0.0092 Score=50.52 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.9
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|+|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 463
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.10 E-value=0.017 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++++|.+|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 3799999999999999998863
No 464
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.10 E-value=0.021 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++++|.+|+|||||++.|.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999975
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.10 E-value=0.02 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.8
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37999999999999999999854
No 466
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.09 E-value=0.021 Score=46.51 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=18.0
Q ss_pred EeeeecCCCCChhhHHHhh
Q 020622 219 RAGIVGYPNVGKSSLINRL 237 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L 237 (323)
.|+++|.||+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 467
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.07 E-value=0.02 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++|+|.+|+|||||++.|.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.06 E-value=0.02 Score=51.54 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 469
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.06 E-value=0.02 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.3
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++++|.+|+|||||++.|.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
No 470
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.03 E-value=0.025 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
+..|.++|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 471
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.96 E-value=0.026 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.8
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
+..|+++|.+|+||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998754
No 472
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.96 E-value=0.015 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.8
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++|+|.+|+|||||++.|.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999753
No 473
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.94 E-value=0.022 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred eEeeeecCCCCChhhHHHhhhcC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
..|+++|.+|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 474
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.94 E-value=0.022 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.6
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.|+++|.+|+||||+.+.|.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.91 E-value=0.023 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999753
No 476
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.90 E-value=0.032 Score=54.11 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=45.4
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHhC-CCCeEEEEeccCCccHHhHHHHHHHHH----hhCceEEEecCc
Q 020622 123 VVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFA----KQGTKVIFSNGQ 185 (323)
Q Consensus 123 lIl~VvDar~~~~~~~~~i~~~l~-~k~~iiVlNK~DLl~~~~~~~~~~~~~----~~g~~vi~iSa~ 185 (323)
++++|+|++.+++..+..+...+. +.++|+|+||+|.++..+...+.+.+. ..|..++++|.-
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 477888998888888888888876 679999999999998887666555444 345777888753
No 477
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.89 E-value=0.024 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999753
No 478
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.87 E-value=0.023 Score=51.05 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999854
No 479
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.87 E-value=0.031 Score=57.60 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEeeeecCCCCChhhHHHhhhc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
-+|+|+|...+|||||.-+|+.
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~ 35 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLF 35 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999873
No 480
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.85 E-value=0.028 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.6
Q ss_pred eEeeeecCCCCChhhHHHhhhc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
..++++|.+|+||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 481
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.83 E-value=0.028 Score=54.54 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.2
Q ss_pred cceEeeeecCCCCChhhHHHhhh
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLL 238 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~ 238 (323)
.+..|+++|.+||||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999987
No 482
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.82 E-value=0.023 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.4
Q ss_pred EeeeecCCCCChhhHHHhhhc
Q 020622 219 RAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~ 239 (323)
.|+|+|.+|+||||+.+.|.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 489999999999999999986
No 483
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.82 E-value=0.027 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.8
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.|.++|.||+||||+.+.|.++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999863
No 484
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.81 E-value=0.05 Score=48.56 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=38.8
Q ss_pred cccccchH------HHHHHHHHHHH--hhcCeEEEEEeCCCC-CCCCcHHHHHHhC-------CCCeEEEEeccCCccH
Q 020622 100 VQWYPGHI------AKTEKELKDQL--KLMDVVIEVRDARIP-LSTTHPLMDQWLG-------NRKRILVLNREDMISM 162 (323)
Q Consensus 100 i~~~PGh~------~k~~~~l~~~i--~~aDlIl~VvDar~~-~~~~~~~i~~~l~-------~k~~iiVlNK~DLl~~ 162 (323)
+-++|||. ..+.+.+...+ ..+|++|+|+|.... +...+..+.+.+. .+|+++|+||+|+.+.
T Consensus 88 liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 88 IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred EEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 56778873 24444444444 378999999876543 2222333443332 2489999999999643
No 485
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.74 E-value=0.024 Score=48.26 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.4
Q ss_pred EeeeecCCCCChhhHHHhhhc
Q 020622 219 RAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~ 239 (323)
.|+++|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999875
No 486
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.74 E-value=0.092 Score=49.82 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=33.7
Q ss_pred CCCeEEEEeccCC--cc---HHhHHHHHHHHHhhCceEEEecCcCCCcchhhhH
Q 020622 147 NRKRILVLNREDM--IS---MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (323)
Q Consensus 147 ~k~~iiVlNK~DL--l~---~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (323)
.||++++.||.|. .+ ........++....+..++++||+.+.++.+|.+
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG 254 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence 4899999999973 33 2223344444555577899999998877766643
No 487
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.64 E-value=0.023 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.1
Q ss_pred eEeeeecCCCCChhhHHHhhhcC
Q 020622 218 VRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
..|+|+|.+|+||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 488
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.61 E-value=0.026 Score=47.00 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|..|+|||||++.|.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998754
No 489
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.60 E-value=0.033 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.3
Q ss_pred ceEeeeecCCCCChhhHHHhhhc
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
+..|+++|.||+||||+.+.|.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999974
No 490
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.56 E-value=0.037 Score=47.25 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.4
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
+..|+++|.+|+||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999875
No 491
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.53 E-value=0.035 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEeeeecCCCCChhhHHHhhhc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
..|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 492
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.45 E-value=0.032 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.6
Q ss_pred eEeeeecCCCCChhhHHHhhhc
Q 020622 218 VRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 218 ~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
..|+|.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999865
No 493
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.45 E-value=0.031 Score=46.56 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.2
Q ss_pred EeeeecCCCCChhhHHHhhhc
Q 020622 219 RAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~ 239 (323)
.|+|+|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 494
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.44 E-value=0.033 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.7
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
.++++|.+|+|||||++.|.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999753
No 495
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.39 E-value=0.03 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.6
Q ss_pred EeeeecCCCCChhhHHHhhhcCc
Q 020622 219 RAGIVGYPNVGKSSLINRLLKRR 241 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~~ 241 (323)
-++++|.+|+|||||++.|.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 37999999999999999999753
No 496
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.39 E-value=0.034 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.2
Q ss_pred cceEeeeecCCCCChhhHHHhhhc
Q 020622 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 216 ~~~~v~ivG~pNvGKSSLiN~L~~ 239 (323)
.+.-++|+|.+|+|||||++.|.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345699999999999999999986
No 497
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.37 E-value=0.028 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.5
Q ss_pred EeeeecCCCCChhhHHHhhhc
Q 020622 219 RAGIVGYPNVGKSSLINRLLK 239 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~ 239 (323)
-++++|.+|+|||||++.|.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 498
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.31 E-value=0.031 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++++|.+|+|||||+|+|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999974
No 499
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.27 E-value=0.036 Score=46.85 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.2
Q ss_pred ceEeeeecCCCCChhhHHHhhhcC
Q 020622 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 217 ~~~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
+..|+|+|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999865
No 500
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.23 E-value=0.031 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.3
Q ss_pred EeeeecCCCCChhhHHHhhhcC
Q 020622 219 RAGIVGYPNVGKSSLINRLLKR 240 (323)
Q Consensus 219 ~v~ivG~pNvGKSSLiN~L~~~ 240 (323)
.++|+|.+|+|||||+|+|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999974
Done!