BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020623
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 98/258 (37%), Gaps = 34/258 (13%)
Query: 8 YYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLAL 67
Y GPR A+ +V +LKK P L ++ E F+ + F E+ L
Sbjct: 91 YDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKA 150
Query: 68 KYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS------------YNEHNIFYGPFD 115
+ + A E + YD D ++ +PS Y E + G
Sbjct: 151 ASNLRDNYRFAHTNVESLVNEYD-DNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGK-- 207
Query: 116 EEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKS-----QKLVTTLK 170
+++FI++N + + +D +L++ I V+ E K +++ K
Sbjct: 208 ---IKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAK 264
Query: 171 AAASANRELVFCYVGIKQFA-DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEED 229
A +L F K F+ + +D + ++P + + T G + + +E+
Sbjct: 265 KFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAI-------RTAKGEKFVMQEE 317
Query: 230 ---QGSQISRFLEGYREG 244
G + RFL+ Y +G
Sbjct: 318 FSRDGKALERFLQDYFDG 335
>pdb|3HE7|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
Length = 242
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 3 GIPTEYYGPRKAELLVRYLKKFVAPDVSILN-SDAEVSDFVENAGTFFPLFIGFGLDESV 61
G+ T+Y+GP L++ LK P+V++ S+AE+S T L GF D
Sbjct: 97 GLDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISH--TQKATLVCLATGFYPDHVE 154
Query: 62 MS 63
+S
Sbjct: 155 LS 156
>pdb|1SP8|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|C Chain C, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|D Chain D, 4-hydroxyphenylpyruvate Dioxygenase
Length = 418
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 183 YVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241
+ G +FA+F +S L MV+ + +EN L + +E + + SQI FL+ +
Sbjct: 220 FTGFHEFAEFTTEDVGTAESGLNSMVLANNSENVLLPL-NEPVHGTKRRSQIQTFLDHH 277
>pdb|3TYF|B Chain B, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|D Chain D, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|B Chain B, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|H Chain H, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 259
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 4 IPTEYYGPRKAELLVRYLKKFVAPDVSILN-SDAEVSDFVENAGTFFPLFIGFGLDESVM 62
+ T+Y+GP L++ LK P+V++ S+AE+S T L GF D +
Sbjct: 105 VGTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISH--TQKATLVCLATGFYPDHVEL 162
Query: 63 S 63
S
Sbjct: 163 S 163
>pdb|1QRN|E Chain E, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
Length = 243
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 3 GIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVM 62
G P +Y+GP + LK P+V++ AE + A T L GF D +
Sbjct: 98 GRPEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSAEEISHTQKA-TLVCLATGFYPDHVEL 156
Query: 63 S 63
S
Sbjct: 157 S 157
>pdb|2XDQ|B Chain B, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
Chlb)2 Complex
Length = 511
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 105 NEHNIFYGPFDEEFLEEFI-----KQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETE 159
N H I + P +++ +++F P++ I D L + + K+V I+ +TE
Sbjct: 28 NVHGIMHAPLGDDYFNVMRSMLERERDFTPVTASI-VDRHVLARGSQEKVVDNIIRKDTE 86
Query: 160 EKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEAN 199
E +V T +S +E + +V + AD A+
Sbjct: 87 EHPDLIVLTPTCTSSILQEDLQNFVRRASLSTTADVLLAD 126
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 142 LKDDKRKIVLAIVEDETEEKSQKLVTTLK-----AAASANRELVFCYV--GIKQFADFAD 194
L+DD + V +I + + EEK Q++ ++ K RE F Y+ G++Q D +
Sbjct: 35 LQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYE 94
Query: 195 TFEANKKSKLPKMVVW 210
+A++ P + W
Sbjct: 95 CLDASR----PTLCYW 106
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 142 LKDDKRKIVLAIVEDETEEKSQKLVTTLK-----AAASANRELVFCYV--GIKQFADFAD 194
L+DD + V +I + + EEK Q++ ++ K RE F Y+ G++Q D +
Sbjct: 35 LQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYE 94
Query: 195 TFEANKKSKLPKMVVW 210
+A++ P + W
Sbjct: 95 CLDASR----PTLCYW 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,222,226
Number of Sequences: 62578
Number of extensions: 377725
Number of successful extensions: 812
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 19
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)