Query 020623
Match_columns 323
No_of_seqs 149 out of 1178
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 5.8E-40 1.3E-44 314.0 18.2 275 2-289 108-399 (493)
2 TIGR01130 ER_PDI_fam protein d 100.0 2.7E-28 5.8E-33 238.4 21.8 275 2-290 84-380 (462)
3 PTZ00102 disulphide isomerase; 100.0 2.2E-28 4.7E-33 240.7 20.9 265 2-290 115-391 (477)
4 PF01216 Calsequestrin: Calseq 99.9 7.3E-24 1.6E-28 192.1 24.5 236 2-248 121-374 (383)
5 PF13848 Thioredoxin_6: Thiore 99.9 3E-24 6.5E-29 184.6 21.0 172 60-240 10-184 (184)
6 KOG0912 Thiol-disulfide isomer 99.9 2.6E-23 5.7E-28 185.0 17.4 241 2-254 81-331 (375)
7 KOG4277 Uncharacterized conser 99.7 7.4E-16 1.6E-20 137.5 15.6 231 3-248 110-357 (468)
8 cd03072 PDI_b'_ERp44 PDIb' fam 99.6 1.7E-15 3.6E-20 120.2 10.3 105 131-245 1-111 (111)
9 cd02983 P5_C P5 family, C-term 99.5 3.4E-13 7.4E-18 109.9 13.7 119 129-255 2-129 (130)
10 cd03073 PDI_b'_ERp72_ERp57 PDI 99.5 2.1E-13 4.6E-18 108.0 10.9 102 131-242 1-111 (111)
11 cd02982 PDI_b'_family Protein 99.2 8.4E-11 1.8E-15 91.3 10.4 99 136-242 2-103 (103)
12 cd03066 PDI_b_Calsequestrin_mi 99.2 1.2E-10 2.7E-15 90.8 10.7 94 28-127 1-101 (102)
13 cd03069 PDI_b_ERp57 PDIb famil 99.2 1.3E-10 2.7E-15 91.1 9.8 93 28-127 1-104 (104)
14 cd02981 PDI_b_family Protein D 99.1 4.1E-10 9E-15 86.6 10.3 92 29-126 1-97 (97)
15 PTZ00102 disulphide isomerase; 99.1 1.8E-08 3.9E-13 99.3 24.0 222 7-244 212-467 (477)
16 cd03068 PDI_b_ERp72 PDIb famil 99.0 2.3E-09 4.9E-14 84.4 9.5 93 28-126 1-107 (107)
17 TIGR01130 ER_PDI_fam protein d 98.9 6.1E-07 1.3E-11 87.7 23.3 229 7-248 195-460 (462)
18 KOG0190 Protein disulfide isom 98.9 1.2E-07 2.5E-12 92.2 16.6 216 16-251 10-244 (493)
19 cd03074 PDI_b'_Calsequestrin_C 98.8 8.6E-08 1.9E-12 73.4 10.7 108 129-242 1-120 (120)
20 TIGR02187 GlrX_arch Glutaredox 98.4 1.7E-05 3.7E-10 70.2 17.1 167 60-240 42-214 (215)
21 PF13848 Thioredoxin_6: Thiore 98.4 3.4E-06 7.4E-11 72.0 11.7 121 2-125 51-184 (184)
22 PF00085 Thioredoxin: Thioredo 98.3 1.5E-05 3.2E-10 61.2 12.5 100 131-240 1-102 (103)
23 cd03071 PDI_b'_NRX PDIb' famil 98.3 1.4E-05 3E-10 61.4 10.3 102 132-243 2-116 (116)
24 cd03003 PDI_a_ERdj5_N PDIa fam 98.2 3.6E-05 7.7E-10 59.4 11.6 99 129-237 1-100 (101)
25 PF01216 Calsequestrin: Calseq 98.2 0.00032 7E-09 64.9 19.1 198 29-249 36-254 (383)
26 cd03007 PDI_a_ERp29_N PDIa fam 98.2 3E-05 6.6E-10 61.6 10.9 94 29-126 3-115 (116)
27 PF00085 Thioredoxin: Thioredo 98.1 2.8E-05 6E-10 59.6 8.8 94 29-126 1-103 (103)
28 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 0.00012 2.6E-09 56.6 11.5 100 129-238 1-104 (104)
29 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 8.8E-05 1.9E-09 57.4 10.4 94 27-123 1-104 (104)
30 cd03001 PDI_a_P5 PDIa family, 97.9 0.00029 6.3E-09 54.1 11.9 98 131-238 2-102 (103)
31 KOG0912 Thiol-disulfide isomer 97.9 0.0001 2.2E-09 67.0 10.1 139 36-181 4-158 (375)
32 KOG0191 Thioredoxin/protein di 97.9 0.0012 2.6E-08 63.5 18.4 174 60-245 67-255 (383)
33 cd03001 PDI_a_P5 PDIa family, 97.9 0.00027 5.8E-09 54.3 11.1 92 29-123 2-102 (103)
34 cd02983 P5_C P5 family, C-term 97.9 0.00022 4.7E-09 58.1 10.9 100 27-130 2-118 (130)
35 PRK10996 thioredoxin 2; Provis 97.8 0.00045 9.7E-09 56.8 12.4 101 131-241 37-138 (139)
36 TIGR01126 pdi_dom protein disu 97.8 0.0003 6.6E-09 53.7 10.7 97 134-241 1-101 (102)
37 PRK09381 trxA thioredoxin; Pro 97.8 0.00079 1.7E-08 52.5 12.2 101 131-242 5-108 (109)
38 cd03002 PDI_a_MPD1_like PDI fa 97.7 0.00068 1.5E-08 52.7 10.9 93 29-124 2-109 (109)
39 cd02989 Phd_like_TxnDC9 Phosdu 97.7 0.0012 2.7E-08 52.2 12.3 105 130-238 5-112 (113)
40 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00078 1.7E-08 52.5 11.1 98 131-238 3-108 (108)
41 cd03006 PDI_a_EFP1_N PDIa fami 97.7 0.00036 7.8E-09 55.3 9.2 93 26-123 8-113 (113)
42 cd03003 PDI_a_ERdj5_N PDIa fam 97.6 0.00093 2E-08 51.4 10.9 92 27-123 1-101 (101)
43 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.00099 2.2E-08 52.8 11.0 99 129-238 9-113 (113)
44 cd02961 PDI_a_family Protein D 97.6 0.00087 1.9E-08 50.5 10.4 96 133-238 2-101 (101)
45 cd02957 Phd_like Phosducin (Ph 97.6 0.00089 1.9E-08 52.8 10.6 106 128-238 3-112 (113)
46 cd02996 PDI_a_ERp44 PDIa famil 97.6 0.00095 2.1E-08 52.0 10.2 92 28-123 2-108 (108)
47 cd02995 PDI_a_PDI_a'_C PDIa fa 97.6 0.00092 2E-08 51.2 10.0 93 28-123 1-104 (104)
48 cd03065 PDI_b_Calsequestrin_N 97.5 0.00089 1.9E-08 53.7 9.8 93 28-125 10-117 (120)
49 cd03002 PDI_a_MPD1_like PDI fa 97.5 0.0018 3.9E-08 50.2 11.2 102 131-238 2-108 (109)
50 cd03065 PDI_b_Calsequestrin_N 97.5 0.0012 2.6E-08 52.9 10.0 103 130-242 10-119 (120)
51 cd02998 PDI_a_ERp38 PDIa famil 97.5 0.0016 3.5E-08 49.8 10.2 98 131-238 2-105 (105)
52 PTZ00443 Thioredoxin domain-co 97.5 0.0021 4.5E-08 57.2 12.1 106 129-244 30-141 (224)
53 KOG0910 Thioredoxin-like prote 97.4 0.002 4.3E-08 53.1 10.5 106 128-243 42-149 (150)
54 TIGR01068 thioredoxin thioredo 97.4 0.0033 7.2E-08 47.6 11.2 97 135-241 2-100 (101)
55 TIGR01126 pdi_dom protein disu 97.4 0.0024 5.1E-08 48.6 10.2 89 34-126 2-101 (102)
56 cd02965 HyaE HyaE family; HyaE 97.3 0.0028 6.1E-08 50.0 10.0 81 131-214 12-94 (111)
57 cd02997 PDI_a_PDIR PDIa family 97.3 0.0035 7.7E-08 47.9 10.5 97 131-238 2-104 (104)
58 PF07912 ERp29_N: ERp29, N-ter 97.3 0.0022 4.9E-08 50.9 9.2 96 28-127 5-119 (126)
59 cd02994 PDI_a_TMX PDIa family, 97.3 0.0068 1.5E-07 46.4 11.8 96 131-239 3-100 (101)
60 cd03005 PDI_a_ERp46 PDIa famil 97.3 0.0038 8.3E-08 47.6 10.2 96 131-238 2-102 (102)
61 cd02961 PDI_a_family Protein D 97.2 0.0043 9.3E-08 46.6 10.0 87 34-123 4-101 (101)
62 cd02956 ybbN ybbN protein fami 97.2 0.006 1.3E-07 46.2 10.7 84 146-239 12-96 (96)
63 cd02993 PDI_a_APS_reductase PD 97.2 0.0058 1.3E-07 47.7 10.8 98 131-238 3-109 (109)
64 cd02950 TxlA TRX-like protein 97.2 0.0083 1.8E-07 49.4 12.2 103 138-250 12-118 (142)
65 cd02998 PDI_a_ERp38 PDIa famil 97.2 0.004 8.7E-08 47.6 9.6 92 29-123 2-105 (105)
66 COG3118 Thioredoxin domain-con 97.2 0.005 1.1E-07 56.3 11.1 106 129-244 23-132 (304)
67 KOG0910 Thioredoxin-like prote 97.2 0.0032 7E-08 51.9 8.9 94 30-126 45-147 (150)
68 cd02995 PDI_a_PDI_a'_C PDIa fa 97.1 0.0082 1.8E-07 45.8 10.7 97 131-238 2-104 (104)
69 cd02993 PDI_a_APS_reductase PD 97.1 0.0071 1.5E-07 47.2 10.3 93 28-123 2-109 (109)
70 cd02963 TRX_DnaJ TRX domain, D 97.1 0.0066 1.4E-07 47.7 9.9 86 145-240 23-110 (111)
71 cd02987 Phd_like_Phd Phosducin 97.0 0.01 2.2E-07 50.8 11.4 110 127-241 60-174 (175)
72 cd03070 PDI_b_ERp44 PDIb famil 97.0 0.0025 5.5E-08 48.3 6.7 79 29-115 1-85 (91)
73 PRK10996 thioredoxin 2; Provis 97.0 0.0096 2.1E-07 48.9 10.8 93 29-126 37-138 (139)
74 cd02999 PDI_a_ERp44_like PDIa 97.0 0.0063 1.4E-07 46.9 9.1 83 145-238 17-100 (100)
75 PRK11509 hydrogenase-1 operon 97.0 0.02 4.3E-07 46.6 12.1 113 119-245 10-127 (132)
76 TIGR01068 thioredoxin thioredo 97.0 0.011 2.4E-07 44.6 10.2 90 34-126 2-100 (101)
77 PTZ00051 thioredoxin; Provisio 97.0 0.014 3E-07 44.3 10.7 75 135-213 7-81 (98)
78 PRK09381 trxA thioredoxin; Pro 97.0 0.013 2.7E-07 45.6 10.4 97 27-127 3-108 (109)
79 cd02984 TRX_PICOT TRX domain, 96.9 0.015 3.1E-07 44.0 10.5 92 136-238 2-96 (97)
80 cd03005 PDI_a_ERp46 PDIa famil 96.9 0.0089 1.9E-07 45.5 9.3 89 29-123 2-102 (102)
81 cd03067 PDI_b_PDIR_N PDIb fami 96.9 0.009 1.9E-07 45.7 8.8 103 130-240 2-110 (112)
82 cd02982 PDI_b'_family Protein 96.9 0.0068 1.5E-07 46.4 8.6 77 50-126 14-102 (103)
83 cd02947 TRX_family TRX family; 96.9 0.015 3.3E-07 42.5 10.3 89 139-238 3-92 (93)
84 cd02948 TRX_NDPK TRX domain, T 96.9 0.019 4.1E-07 44.2 11.0 94 135-240 6-101 (102)
85 cd02988 Phd_like_VIAF Phosduci 96.8 0.026 5.7E-07 49.0 12.4 109 125-240 78-190 (192)
86 cd02989 Phd_like_TxnDC9 Phosdu 96.8 0.024 5.2E-07 44.7 11.2 92 28-123 5-112 (113)
87 cd02999 PDI_a_ERp44_like PDIa 96.8 0.0051 1.1E-07 47.5 7.1 71 50-123 20-100 (100)
88 cd02949 TRX_NTR TRX domain, no 96.8 0.019 4.2E-07 43.7 10.2 88 142-239 9-97 (97)
89 cd02948 TRX_NDPK TRX domain, T 96.8 0.015 3.3E-07 44.8 9.5 90 31-125 3-101 (102)
90 cd02994 PDI_a_TMX PDIa family, 96.7 0.021 4.6E-07 43.6 9.7 90 28-125 2-101 (101)
91 cd02997 PDI_a_PDIR PDIa family 96.7 0.022 4.8E-07 43.4 9.6 90 29-123 2-104 (104)
92 cd03007 PDI_a_ERp29_N PDIa fam 96.6 0.048 1E-06 43.4 11.4 98 131-240 3-114 (116)
93 cd02956 ybbN ybbN protein fami 96.6 0.021 4.6E-07 43.1 8.9 85 37-124 2-96 (96)
94 cd03000 PDI_a_TMX3 PDIa family 96.6 0.042 9.2E-07 42.3 10.6 93 137-241 7-103 (104)
95 cd02965 HyaE HyaE family; HyaE 96.5 0.027 5.9E-07 44.4 9.4 97 17-120 2-109 (111)
96 PHA02278 thioredoxin-like prot 96.5 0.023 5E-07 44.2 8.7 86 33-122 2-100 (103)
97 TIGR00424 APS_reduc 5'-adenyly 96.5 0.03 6.6E-07 55.0 11.4 97 26-125 350-461 (463)
98 cd02975 PfPDO_like_N Pyrococcu 96.4 0.045 9.7E-07 43.2 10.2 88 145-243 21-111 (113)
99 cd02962 TMX2 TMX2 family; comp 96.4 0.082 1.8E-06 44.1 11.8 82 130-213 29-118 (152)
100 cd02953 DsbDgamma DsbD gamma f 96.3 0.047 1E-06 41.9 9.7 92 138-239 3-104 (104)
101 PTZ00443 Thioredoxin domain-co 96.3 0.047 1E-06 48.6 10.8 97 27-128 30-140 (224)
102 PRK11509 hydrogenase-1 operon 96.3 0.041 9E-07 44.7 9.2 107 16-130 9-127 (132)
103 COG3118 Thioredoxin domain-con 96.3 0.059 1.3E-06 49.4 11.1 97 29-129 25-132 (304)
104 cd02953 DsbDgamma DsbD gamma f 96.2 0.064 1.4E-06 41.2 10.0 86 36-124 2-104 (104)
105 PLN02309 5'-adenylylsulfate re 96.2 0.057 1.2E-06 53.0 11.6 97 27-126 345-456 (457)
106 KOG4277 Uncharacterized conser 96.2 0.089 1.9E-06 48.1 11.7 179 40-240 36-229 (468)
107 cd02954 DIM1 Dim1 family; Dim1 96.2 0.062 1.3E-06 42.6 9.5 73 137-213 3-78 (114)
108 PF07912 ERp29_N: ERp29, N-ter 96.2 0.18 4E-06 40.2 12.0 104 129-240 4-117 (126)
109 TIGR00424 APS_reduc 5'-adenyly 96.1 0.085 1.8E-06 51.9 12.4 104 129-241 351-462 (463)
110 cd02985 TRX_CDSP32 TRX family, 96.1 0.13 2.9E-06 39.6 11.2 73 136-212 3-80 (103)
111 PLN02309 5'-adenylylsulfate re 96.1 0.092 2E-06 51.6 12.4 104 129-241 345-456 (457)
112 TIGR03143 AhpF_homolog putativ 96.1 0.84 1.8E-05 46.2 19.6 160 63-238 389-554 (555)
113 cd02957 Phd_like Phosducin (Ph 96.0 0.058 1.3E-06 42.4 8.9 92 29-123 6-112 (113)
114 KOG0191 Thioredoxin/protein di 95.8 0.14 3E-06 49.3 12.1 125 4-130 113-255 (383)
115 cd03000 PDI_a_TMX3 PDIa family 95.8 0.12 2.6E-06 39.7 9.6 85 36-126 7-103 (104)
116 cd02963 TRX_DnaJ TRX domain, D 95.7 0.084 1.8E-06 41.3 8.6 89 34-125 10-110 (111)
117 PTZ00051 thioredoxin; Provisio 95.7 0.1 2.2E-06 39.4 8.6 87 28-120 1-96 (98)
118 cd03072 PDI_b'_ERp44 PDIb' fam 95.6 0.11 2.4E-06 40.9 8.9 94 29-126 1-107 (111)
119 cd02949 TRX_NTR TRX domain, no 95.5 0.12 2.6E-06 39.2 8.5 85 37-124 4-97 (97)
120 cd02984 TRX_PICOT TRX domain, 95.3 0.18 3.9E-06 37.8 8.8 86 34-123 1-96 (97)
121 cd02954 DIM1 Dim1 family; Dim1 95.3 0.17 3.6E-06 40.1 8.7 68 34-103 1-78 (114)
122 cd02987 Phd_like_Phd Phosducin 95.2 0.22 4.8E-06 42.5 10.2 98 28-126 63-174 (175)
123 cd02950 TxlA TRX-like protein 95.0 0.23 4.9E-06 40.9 9.3 89 36-127 11-110 (142)
124 TIGR02187 GlrX_arch Glutaredox 95.0 0.53 1.1E-05 41.4 12.1 116 2-125 86-214 (215)
125 cd02992 PDI_a_QSOX PDIa family 94.9 0.49 1.1E-05 37.2 10.7 89 28-119 2-108 (114)
126 PHA02278 thioredoxin-like prot 94.9 0.59 1.3E-05 36.2 10.8 91 137-237 5-100 (103)
127 cd02947 TRX_family TRX family; 94.8 0.19 4.1E-06 36.5 7.6 83 37-124 2-93 (93)
128 cd02981 PDI_b_family Protein D 94.7 0.49 1.1E-05 35.6 9.8 86 138-240 9-96 (97)
129 PLN00410 U5 snRNP protein, DIM 94.7 0.37 8E-06 39.7 9.6 73 29-103 5-88 (142)
130 cd02992 PDI_a_QSOX PDIa family 94.7 0.39 8.5E-06 37.8 9.5 81 130-214 2-89 (114)
131 cd03073 PDI_b'_ERp72_ERp57 PDI 94.6 0.18 3.9E-06 39.7 7.4 65 61-126 39-110 (111)
132 cd02951 SoxW SoxW family; SoxW 94.6 0.59 1.3E-05 37.1 10.6 95 142-245 9-122 (125)
133 TIGR00411 redox_disulf_1 small 94.6 0.28 6.1E-06 35.5 8.1 67 162-241 14-81 (82)
134 cd02985 TRX_CDSP32 TRX family, 94.4 0.51 1.1E-05 36.3 9.5 87 34-125 2-101 (103)
135 PF02114 Phosducin: Phosducin; 94.2 0.4 8.7E-06 43.8 9.8 113 127-248 123-242 (265)
136 cd03066 PDI_b_Calsequestrin_mi 94.2 0.69 1.5E-05 35.5 9.8 90 135-241 7-100 (102)
137 PTZ00062 glutaredoxin; Provisi 94.0 2.4 5.2E-05 37.2 13.8 160 32-210 3-175 (204)
138 cd03069 PDI_b_ERp57 PDIb famil 93.8 0.68 1.5E-05 35.8 9.0 91 136-240 8-102 (104)
139 PLN00410 U5 snRNP protein, DIM 93.8 1.5 3.4E-05 36.1 11.4 72 137-212 12-87 (142)
140 KOG0907 Thioredoxin [Posttrans 93.2 0.76 1.6E-05 35.9 8.4 73 50-126 23-105 (106)
141 cd02952 TRP14_like Human TRX-r 92.9 1.2 2.6E-05 35.5 9.3 93 137-238 10-118 (119)
142 PTZ00062 glutaredoxin; Provisi 92.8 1.7 3.8E-05 38.0 10.9 66 136-213 6-72 (204)
143 cd03068 PDI_b_ERp72 PDIb famil 92.8 0.97 2.1E-05 35.2 8.5 93 135-240 7-106 (107)
144 TIGR01295 PedC_BrcD bacterioci 92.5 2.6 5.7E-05 33.6 10.9 103 130-239 7-121 (122)
145 cd02986 DLP Dim1 family, Dim1- 92.3 1.5 3.3E-05 34.6 9.0 64 145-212 13-77 (114)
146 KOG0907 Thioredoxin [Posttrans 92.1 1.5 3.2E-05 34.3 8.7 64 146-213 21-84 (106)
147 KOG0908 Thioredoxin-like prote 92.1 1 2.2E-05 40.5 8.5 97 28-127 2-106 (288)
148 cd02951 SoxW SoxW family; SoxW 92.0 1.9 4.2E-05 34.0 9.6 88 35-125 3-117 (125)
149 cd02975 PfPDO_like_N Pyrococcu 91.6 2.8 6E-05 32.8 9.9 65 60-125 42-108 (113)
150 cd02986 DLP Dim1 family, Dim1- 91.5 1.7 3.6E-05 34.4 8.4 67 35-103 2-78 (114)
151 cd02962 TMX2 TMX2 family; comp 91.3 1.8 3.9E-05 36.1 9.0 73 29-103 30-118 (152)
152 cd02988 Phd_like_VIAF Phosduci 91.3 3.3 7.2E-05 35.9 10.9 94 28-126 83-191 (192)
153 cd02955 SSP411 TRX domain, SSP 91.1 3.8 8.3E-05 32.8 10.4 105 134-242 3-119 (124)
154 TIGR01295 PedC_BrcD bacterioci 90.6 3.4 7.5E-05 32.9 9.7 91 29-124 8-121 (122)
155 PRK03147 thiol-disulfide oxido 89.9 5 0.00011 33.4 10.7 44 191-242 129-172 (173)
156 cd02973 TRX_GRX_like Thioredox 89.9 1.2 2.5E-05 31.0 5.7 44 163-209 15-58 (67)
157 cd03026 AhpF_NTD_C TRX-GRX-lik 89.7 2.1 4.5E-05 32.1 7.3 61 145-209 10-71 (89)
158 cd03067 PDI_b_PDIR_N PDIb fami 89.5 3.3 7.1E-05 32.0 8.0 92 30-125 4-110 (112)
159 PF02114 Phosducin: Phosducin; 88.5 1.8 4E-05 39.5 7.4 98 29-127 127-238 (265)
160 KOG2603 Oligosaccharyltransfer 88.2 7 0.00015 36.3 10.8 124 119-246 30-170 (331)
161 cd02966 TlpA_like_family TlpA- 87.0 5.4 0.00012 29.8 8.3 66 146-215 19-109 (116)
162 PRK15317 alkyl hydroperoxide r 86.5 7.3 0.00016 39.0 11.0 112 93-209 60-175 (517)
163 KOG1672 ATP binding protein [P 86.4 7.7 0.00017 33.6 9.3 115 117-238 55-174 (211)
164 TIGR03140 AhpF alkyl hydropero 86.2 39 0.00084 33.8 16.8 112 93-209 61-176 (515)
165 PF11009 DUF2847: Protein of u 85.5 3.3 7.2E-05 32.2 6.2 86 30-120 2-105 (105)
166 PRK14018 trifunctional thiored 84.1 12 0.00027 37.5 11.1 75 191-273 130-212 (521)
167 cd02959 ERp19 Endoplasmic reti 84.1 6.7 0.00015 30.9 7.7 72 141-214 14-87 (117)
168 TIGR02740 TraF-like TraF-like 83.4 14 0.0003 33.8 10.5 89 146-243 166-265 (271)
169 PF13905 Thioredoxin_8: Thiore 83.3 12 0.00027 27.5 8.6 20 192-214 74-93 (95)
170 TIGR03143 AhpF_homolog putativ 82.6 23 0.0005 35.8 12.7 126 139-275 357-495 (555)
171 TIGR00411 redox_disulf_1 small 82.4 7.1 0.00015 27.8 6.8 62 60-126 19-81 (82)
172 PF13192 Thioredoxin_3: Thiore 81.7 14 0.0003 26.5 8.0 63 163-239 14-76 (76)
173 cd02952 TRP14_like Human TRX-r 81.4 21 0.00046 28.4 9.5 71 31-102 5-99 (119)
174 cd02958 UAS UAS family; UAS is 81.4 23 0.00049 27.4 10.2 55 179-243 53-112 (114)
175 smart00594 UAS UAS domain. 78.2 31 0.00068 27.1 9.8 55 178-238 62-121 (122)
176 PF07449 HyaE: Hydrogenase-1 e 75.9 3 6.5E-05 32.6 3.0 76 132-212 12-91 (107)
177 PRK00293 dipZ thiol:disulfide 75.8 43 0.00093 34.1 12.1 97 29-126 454-569 (571)
178 PF07449 HyaE: Hydrogenase-1 e 75.1 7.2 0.00016 30.5 5.0 71 28-102 10-91 (107)
179 PRK00293 dipZ thiol:disulfide 74.1 39 0.00085 34.4 11.4 91 145-242 473-570 (571)
180 KOG3170 Conserved phosducin-li 72.4 46 0.001 29.1 9.6 115 117-240 79-199 (240)
181 PF13098 Thioredoxin_2: Thiore 70.8 28 0.0006 26.4 7.5 84 145-238 4-112 (112)
182 TIGR00412 redox_disulf_2 small 67.6 19 0.0004 25.8 5.5 58 60-124 18-76 (76)
183 PF11009 DUF2847: Protein of u 67.2 58 0.0012 25.4 9.0 90 136-234 7-104 (105)
184 PRK03147 thiol-disulfide oxido 66.1 56 0.0012 26.9 9.1 42 83-125 128-170 (173)
185 cd03009 TryX_like_TryX_NRX Try 65.3 46 0.001 26.1 8.0 22 192-216 91-112 (131)
186 TIGR00412 redox_disulf_2 small 65.0 48 0.001 23.6 7.5 41 163-209 14-55 (76)
187 TIGR02740 TraF-like TraF-like 61.9 42 0.0009 30.7 7.9 78 50-127 168-264 (271)
188 KOG0908 Thioredoxin-like prote 59.7 42 0.00091 30.4 7.1 72 163-244 37-108 (288)
189 PF14595 Thioredoxin_9: Thiore 59.4 78 0.0017 25.4 8.3 90 117-213 17-107 (129)
190 cd02969 PRX_like1 Peroxiredoxi 59.4 1E+02 0.0022 25.5 11.2 55 191-249 100-159 (171)
191 PF13778 DUF4174: Domain of un 58.6 89 0.0019 24.6 8.8 91 141-241 5-111 (118)
192 TIGR02739 TraF type-F conjugat 58.4 1.1E+02 0.0023 27.9 9.8 69 162-238 165-244 (256)
193 PF13728 TraF: F plasmid trans 57.2 96 0.0021 27.3 9.1 66 162-235 135-211 (215)
194 cd03010 TlpA_like_DsbE TlpA-li 56.9 82 0.0018 24.4 8.0 21 191-214 91-111 (127)
195 COG4232 Thiol:disulfide interc 56.2 1E+02 0.0022 31.3 9.9 97 30-127 457-568 (569)
196 KOG2603 Oligosaccharyltransfer 55.4 1.4E+02 0.003 28.0 9.9 106 24-131 37-170 (331)
197 cd02964 TryX_like_family Trypa 53.0 1E+02 0.0022 24.2 8.1 20 193-215 92-111 (132)
198 PRK13703 conjugal pilus assemb 52.8 1.5E+02 0.0033 26.8 9.7 74 163-244 159-243 (248)
199 cd03011 TlpA_like_ScsD_MtbDsbE 51.8 1.1E+02 0.0023 23.5 8.1 58 60-120 62-119 (123)
200 cd03011 TlpA_like_ScsD_MtbDsbE 50.8 1.1E+02 0.0024 23.4 9.1 21 191-214 84-104 (123)
201 PF13192 Thioredoxin_3: Thiore 47.8 68 0.0015 22.8 5.6 57 61-124 19-76 (76)
202 KOG2501 Thioredoxin, nucleored 46.7 1.1E+02 0.0025 25.6 7.3 79 126-214 43-126 (157)
203 PF05768 DUF836: Glutaredoxin- 45.6 45 0.00097 24.2 4.4 64 164-239 15-81 (81)
204 TIGR02661 MauD methylamine deh 44.5 2E+02 0.0043 24.4 10.8 47 191-246 137-183 (189)
205 TIGR00385 dsbE periplasmic pro 42.8 74 0.0016 26.6 5.9 50 182-243 121-172 (173)
206 KOG3171 Conserved phosducin-li 42.8 1.6E+02 0.0034 26.2 7.8 99 29-128 140-252 (273)
207 TIGR00385 dsbE periplasmic pro 42.5 1.8E+02 0.004 24.1 8.4 42 83-126 127-170 (173)
208 cd02967 mauD Methylamine utili 42.3 93 0.002 23.4 6.1 12 203-214 95-106 (114)
209 PRK15412 thiol:disulfide inter 42.1 2.1E+02 0.0046 24.1 8.7 40 85-126 134-175 (185)
210 PLN02919 haloacid dehalogenase 42.1 2.3E+02 0.0051 31.3 10.9 89 146-243 420-537 (1057)
211 PF13098 Thioredoxin_2: Thiore 41.3 29 0.00064 26.3 3.0 40 83-123 72-112 (112)
212 cd01659 TRX_superfamily Thiore 38.4 97 0.0021 19.2 5.8 48 163-213 13-63 (69)
213 KOG3171 Conserved phosducin-li 38.2 73 0.0016 28.2 5.1 106 129-253 138-250 (273)
214 PRK15412 thiol:disulfide inter 37.0 1.4E+02 0.0031 25.1 6.9 53 182-246 126-180 (185)
215 KOG0914 Thioredoxin-like prote 34.3 41 0.00089 29.8 3.0 50 164-213 161-215 (265)
216 cd02978 KaiB_like KaiB-like fa 32.6 1.4E+02 0.0031 21.5 5.1 55 150-208 4-60 (72)
217 PF09695 YtfJ_HI0045: Bacteria 31.7 1.3E+02 0.0029 25.2 5.5 52 183-243 108-159 (160)
218 PF12976 DUF3860: Domain of Un 31.3 1.1E+02 0.0024 22.3 4.3 38 11-54 18-55 (92)
219 PF05402 PqqD: Coenzyme PQQ sy 29.9 54 0.0012 22.6 2.6 36 7-44 25-60 (68)
220 PF13728 TraF: F plasmid trans 28.5 3.8E+02 0.0083 23.5 8.3 62 60-121 140-212 (215)
221 PF00837 T4_deiodinase: Iodoth 26.5 1.1E+02 0.0023 27.6 4.3 40 138-178 94-133 (237)
222 cd03012 TlpA_like_DipZ_like Tl 26.4 3E+02 0.0066 21.2 8.6 18 194-214 99-116 (126)
223 PF11090 DUF2833: Protein of u 25.6 1.2E+02 0.0025 22.7 3.7 28 171-198 51-79 (86)
224 PF00578 AhpC-TSA: AhpC/TSA fa 25.5 2.2E+02 0.0047 21.6 5.7 43 145-187 24-68 (124)
225 TIGR02738 TrbB type-F conjugat 25.5 3.8E+02 0.0083 22.0 8.9 70 163-241 66-152 (153)
226 KOG0914 Thioredoxin-like prote 25.2 1.9E+02 0.0042 25.8 5.5 75 29-104 126-216 (265)
227 PF13905 Thioredoxin_8: Thiore 24.9 2.7E+02 0.0058 20.0 6.0 52 51-102 37-91 (95)
228 PRK11200 grxA glutaredoxin 1; 24.7 2E+02 0.0043 20.7 4.9 47 162-209 14-64 (85)
229 PF13899 Thioredoxin_7: Thiore 24.5 2.6E+02 0.0057 19.8 5.6 63 143-212 14-82 (82)
230 PHA02554 13 neck protein; Prov 23.6 1.1E+02 0.0024 28.4 3.9 36 10-45 4-40 (311)
231 KOG3196 NADH:ubiquinone oxidor 23.3 1.1E+02 0.0024 26.5 3.7 36 202-249 165-200 (233)
232 PF10281 Ish1: Putative stress 22.4 1E+02 0.0022 18.9 2.5 22 113-134 3-24 (38)
233 PF09494 Slx4: Slx4 endonuclea 21.7 1.2E+02 0.0026 21.0 3.1 35 112-146 23-57 (64)
234 PTZ00253 tryparedoxin peroxida 21.2 5.2E+02 0.011 22.0 8.4 60 191-257 111-177 (199)
235 KOG1672 ATP binding protein [P 20.2 3.6E+02 0.0079 23.5 6.2 95 29-127 68-178 (211)
236 KOG0913 Thiol-disulfide isomer 20.2 70 0.0015 28.6 1.9 23 2-24 103-125 (248)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-40 Score=314.04 Aligned_cols=275 Identities=20% Similarity=0.292 Sum_probs=231.1
Q ss_pred CCc-ccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC----hhHHHHHHHhhcCceeEE
Q 020623 2 HGI-PTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----ESVMSNLALKYKKKAWFA 76 (323)
Q Consensus 2 ~G~-~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~----~~~f~~~A~~~~~~~~F~ 76 (323)
||. +.+|+|+|++++||.||+++++|+++.|.+.++++.|+...+ +++||||.+ .+.|...|..+++++.|+
T Consensus 108 nG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~---~~vig~F~d~~~~~~~~~~~a~~l~~d~~F~ 184 (493)
T KOG0190|consen 108 NGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKD---VVVIGFFKDLESLAESFFDAASKLRDDYKFA 184 (493)
T ss_pred cCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCc---eEEEEEecccccchHHHHHHHHhccccceee
Confidence 687 599999999999999999999999999999999999999977 479998763 346778888999999999
Q ss_pred eecccchhhHhhcCCCC--CCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcE-EEEE
Q 020623 77 VAKDFSEDTMVLYDFDK--VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKI-VLAI 153 (323)
Q Consensus 77 ~~~~~~~~~~~~~~~~~--~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~-v~~f 153 (323)
++ .+.+++.++++.. .+.++++++.++....|+|+++.+.|.+||+.+++|+|+++|.++...++.+..+. +++|
T Consensus 185 ~t--s~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~ 262 (493)
T KOG0190|consen 185 HT--SDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFF 262 (493)
T ss_pred cc--CcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEE
Confidence 87 5678888777632 34588888865556667899999999999999999999999999998888765444 3445
Q ss_pred EeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCC-eEEEEeCC-cceeeccCCCCCCCCCC
Q 020623 154 VEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP-KMVVWDGN-ENYLTVIGSESIDEEDQ 230 (323)
Q Consensus 154 ~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P-~ivI~~~~-~kY~~~~~~~~~~~~~t 230 (323)
++. .....+.+++.++++|++||+ ++|+++|...+++.++.||+ .....| .+++.+.+ +||.+. .++++
T Consensus 263 ~~~-~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl-~~~~~~~~~v~~~~~~~Ky~~~------~e~~~ 334 (493)
T KOG0190|consen 263 VFF-KCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGL-EEEQLPIRAVILNEDGSKYPLE------EEELD 334 (493)
T ss_pred ecc-ccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCc-ccccCCeeEEeeccccccccCc------ccccc
Confidence 543 223568899999999999998 99999999999999999999 667777 44445544 577653 34578
Q ss_pred HHHHHHHHHHHHcCcccccccCC--CCCC--CCeeEEeccCcceehHHH--HHHHHHHHHhcCCC
Q 020623 231 GSQISRFLEGYREGRTEQKKVAG--PSIF--GFVNSLIGIRSVYIIVFM--VAMLMLLRTLGKDD 289 (323)
Q Consensus 231 ~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~--g~v~~vVg~~~~~iv~~~--~~~~~~~~~~~~~~ 289 (323)
.++|.+|+.+|++|+++|++||+ |+.| ++||+|||+||+.||+-- ..++.+...|||||
T Consensus 335 ~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHC 399 (493)
T KOG0190|consen 335 QENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHC 399 (493)
T ss_pred HHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchh
Confidence 88999999999999999999999 7777 799999999999999964 88999999999999
No 2
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.96 E-value=2.7e-28 Score=238.42 Aligned_cols=275 Identities=21% Similarity=0.300 Sum_probs=219.9
Q ss_pred CCcc--cccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC-----hhHHHHHHHhhcCcee
Q 020623 2 HGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-----ESVMSNLALKYKKKAW 74 (323)
Q Consensus 2 ~G~~--~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~~~f~~~A~~~~~~~~ 74 (323)
+|.. ..|.|.|+++.|++|+.++++|++..+++.++++.++..++ +.+|+|+.+ ...|.++|..+++.+.
T Consensus 84 ~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~ 160 (462)
T TIGR01130 84 NGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDD---VVVIGFFKDLDSELNDTFLSVAEKLRDVYF 160 (462)
T ss_pred CCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCC---cEEEEEECCCCcHHHHHHHHHHHHhhhccc
Confidence 4554 78999999999999999999999999999999999999876 468887653 2478899999887765
Q ss_pred -EEeecccchhhHhhcCCCCCCeEEEecCCCCCC--ccccCCC--CHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcE
Q 020623 75 -FAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH--NIFYGPF--DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKI 149 (323)
Q Consensus 75 -F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~--~~y~g~~--~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~ 149 (323)
|+.. .+..+...++. ..+.+++|++..+.. ..|.|+. +.++|.+||..+++|++.++|.+++..++..+ |+
T Consensus 161 ~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~ 236 (462)
T TIGR01130 161 FFAHS--SDVAAFAKLGA-FPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PL 236 (462)
T ss_pred eEEec--CCHHHHhhcCC-CCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-Cc
Confidence 4443 34455566665 357788887643333 3567764 56899999999999999999999999998776 77
Q ss_pred EEEEEeCC-ChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC--cceeeccCCCC
Q 020623 150 VLAIVEDE-TEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--ENYLTVIGSES 224 (323)
Q Consensus 150 v~~f~~~~-~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~--~kY~~~~~~~~ 224 (323)
+++|+..+ +....+++.+.++++|+++++ +.|+++|+.++.+++..||+ ....+|+++|++.+ .+|.+.
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~-~~~~~P~~vi~~~~~~~~y~~~----- 310 (462)
T TIGR01130 237 VVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAVAIQDLEGNKKYPMD----- 310 (462)
T ss_pred eeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCC-CccCCceEEEEeCCcccccCCC-----
Confidence 77666532 222247888999999999994 99999999999999999999 66789999999986 456653
Q ss_pred CCCCCCHHHHHHHHHHHHcCcccccccCC--CCCC-CCeeEEeccCcceehHH--HHHHHHHHHHhcCCCC
Q 020623 225 IDEEDQGSQISRFLEGYREGRTEQKKVAG--PSIF-GFVNSLIGIRSVYIIVF--MVAMLMLLRTLGKDDE 290 (323)
Q Consensus 225 ~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~-g~v~~vVg~~~~~iv~~--~~~~~~~~~~~~~~~~ 290 (323)
++.++.++|.+|++++++|+++|+++|+ |+.+ +.|++++|.||..++.- -..++.+...||+.|.
T Consensus 311 -~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~ 380 (462)
T TIGR01130 311 -QEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCK 380 (462)
T ss_pred -cCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHH
Confidence 2268999999999999999999999999 5543 89999999999877653 2456667788999884
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=99.96 E-value=2.2e-28 Score=240.68 Aligned_cols=265 Identities=21% Similarity=0.274 Sum_probs=211.4
Q ss_pred CCcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEE
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFA 76 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~ 76 (323)
+|....|.|+|++++|++|+.+.++|++..|++..+++.+..... ++++|++.+ + +.|.++|..+++.+.|.
T Consensus 115 ~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~ 191 (477)
T PTZ00102 115 KGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIF---VAFYGEYTSKDSELYKKFEEVADKHREHAKFF 191 (477)
T ss_pred CCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCc---EEEEEEeccCCcHHHHHHHHHHHhccccceEE
Confidence 455568999999999999999999999999999888877655444 467776542 2 36788899998888776
Q ss_pred eecccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeC
Q 020623 77 VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVED 156 (323)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~ 156 (323)
.... .+.+.+.+|++ .+....+.+..+.++|.+||+.+++|++.++|.+++..++..++++++++ .
T Consensus 192 ~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-~- 257 (477)
T PTZ00102 192 VKKH-----------EGKNKIYVLHK-DEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFC-G- 257 (477)
T ss_pred EEcC-----------CCCCcEEEEec-CCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEe-c-
Confidence 6521 13467888886 35555555556889999999999999999999999999998877665433 2
Q ss_pred CChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhh-HhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHH
Q 020623 157 ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQI 234 (323)
Q Consensus 157 ~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~-~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I 234 (323)
..++.+++.+.++++|+++++ ++|+|+|+++++. +++.||+ . .+|+++|.+..++|.++.+. ..-.+.++|
T Consensus 258 -~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi-~--~~P~~~i~~~~~~y~~~~~~---~~~~~~~~l 330 (477)
T PTZ00102 258 -TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLI-E--EFPGLAYQSPAGRYLLPPAK---ESFDSVEAL 330 (477)
T ss_pred -CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCc-c--cCceEEEEcCCcccCCCccc---cccCCHHHH
Confidence 234567788999999999999 9999999999875 7889999 3 58999998877788764211 123689999
Q ss_pred HHHHHHHHcCcccccccCC--CCCC-CCeeEEeccCcceehHHH--HHHHHHHHHhcCCCC
Q 020623 235 SRFLEGYREGRTEQKKVAG--PSIF-GFVNSLIGIRSVYIIVFM--VAMLMLLRTLGKDDE 290 (323)
Q Consensus 235 ~~Fi~~~~~Gkl~~~~kSe--P~~~-g~v~~vVg~~~~~iv~~~--~~~~~~~~~~~~~~~ 290 (323)
.+|++++.+|+++++++|+ |+.+ ++|++++|.+|..+|+-- ..++.+...||++|-
T Consensus 331 ~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~ 391 (477)
T PTZ00102 331 IEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCK 391 (477)
T ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHH
Confidence 9999999999999999999 5544 899999999998877643 567777789999993
No 4
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.93 E-value=7.3e-24 Score=192.09 Aligned_cols=236 Identities=20% Similarity=0.325 Sum_probs=169.5
Q ss_pred CCcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--hh---HHHHHHHhhcCceeEE
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--ES---VMSNLALKYKKKAWFA 76 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~~---~f~~~A~~~~~~~~F~ 76 (323)
+|..++|.|.|+|+.+|+|+......||..|+++.+++.|-.-++. +.+||||++ ++ .|.++|..++.-+.|.
T Consensus 121 d~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~--~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFf 198 (383)
T PF01216_consen 121 DGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDD--IKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFF 198 (383)
T ss_dssp TTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS---EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEE
T ss_pred CCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccc--eeEEEEeCCCCcHHHHHHHHHHHhhcCceeEE
Confidence 5788999999999999999999999999999999999999886543 689999875 32 6778899988777665
Q ss_pred eecccchhhHhhcCCCCCCeEEEecCCCCCCccccC-CCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCC--CcEEEEE
Q 020623 77 VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDK--RKIVLAI 153 (323)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g-~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~--~~~v~~f 153 (323)
.+ +++.++++.++ +.+.|-+|+++.+++.+..| +.+.++|.+||+.|..|.+..++++++.....+. .-++++|
T Consensus 199 At--fd~~vAk~L~l-K~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaF 275 (383)
T PF01216_consen 199 AT--FDKKVAKKLGL-KLNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAF 275 (383)
T ss_dssp EE---SHHHHHHHT--STT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE
T ss_pred EE--ecchhhhhcCc-cccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEE
Confidence 55 68899999998 58899999998778777664 6789999999999999999999999988766543 4566778
Q ss_pred EeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhh----HhhhcCCcCCCCCCeEEEEeCC---cceeeccCCC
Q 020623 154 VEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFAD----FADTFEANKKSKLPKMVVWDGN---ENYLTVIGSE 223 (323)
Q Consensus 154 ~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~----~~~~~gl~~~~~~P~ivI~~~~---~kY~~~~~~~ 223 (323)
...+ ..++-++.+.|+++|+.+.+ +.++|+|.+.|+- |-..|||+ -.-|+|.++|.. +.|.-+++.
T Consensus 276 aee~-dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id--l~~PqIGvVnvtdadsvW~dm~d~- 351 (383)
T PF01216_consen 276 AEEE-DPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID--LSRPQIGVVNVTDADSVWMDMDDD- 351 (383)
T ss_dssp --TT-SHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT---TTS-EEEEEETTTSEEEEC-STTT-
T ss_pred ecCC-CCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc--ccCCceeEEeccccccchhccCCc-
Confidence 7753 44577899999999999764 9999999999975 44689994 446999999973 467666543
Q ss_pred CCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 224 SIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 224 ~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
++..|.+.++.||+++++|++.+
T Consensus 352 --~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 352 --DDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp --SS---HHHHHHHHHHHHCTCCTB
T ss_pred --ccCCcHHHHHHHHHHHhcCCCCC
Confidence 23468999999999999999875
No 5
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.93 E-value=3e-24 Score=184.56 Aligned_cols=172 Identities=24% Similarity=0.427 Sum_probs=145.0
Q ss_pred hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCCCCCCccccCC-CCHHHHHHHHHhhcCCCeeecChhh
Q 020623 60 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDT 138 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~-~~~~~L~~fI~~~~~Plv~~~t~~~ 138 (323)
+.|.++|..+++++.|+++ .+++++..++++ .|+|++||+..++...|.|+ ++.++|.+||+.+++|+|.++|.+|
T Consensus 10 ~~f~~~A~~~~~~~~F~~~--~~~~~~~~~~~~-~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n 86 (184)
T PF13848_consen 10 EIFEEAAEKLKGDYQFGVT--FNEELAKKYGIK-EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPEN 86 (184)
T ss_dssp HHHHHHHHHHTTTSEEEEE--E-HHHHHHCTCS-SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTH
T ss_pred HHHHHHHHhCcCCcEEEEE--cHHHHHHHhCCC-CCcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhh
Confidence 4788999999988999988 477888899986 49999999855566789997 8999999999999999999999999
Q ss_pred HHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC-cce
Q 020623 139 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENY 216 (323)
Q Consensus 139 ~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~-~kY 216 (323)
+..++..++|++++++...+.+..+.+.+.|+++|+++++ +.|+|+|++.++++++.||+ ++.++|+++|++.. ++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~ 165 (184)
T PF13848_consen 87 FEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKY 165 (184)
T ss_dssp HHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEE
T ss_pred HHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcE
Confidence 9999998887444444333456678899999999999999 99999999989999999999 78899999999963 455
Q ss_pred eeccCCCCCCCCCCHHHHHHHHHH
Q 020623 217 LTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 217 ~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
+++. +++++.++|.+|+++
T Consensus 166 ~~~~-----~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 166 YYLP-----EGEITPESIEKFLND 184 (184)
T ss_dssp EE-------SSCGCHHHHHHHHHH
T ss_pred EcCC-----CCCCCHHHHHHHhcC
Confidence 4432 347999999999986
No 6
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.91 E-value=2.6e-23 Score=185.02 Aligned_cols=241 Identities=16% Similarity=0.268 Sum_probs=185.6
Q ss_pred CCcc--cccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCcee
Q 020623 2 HGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAW 74 (323)
Q Consensus 2 ~G~~--~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~ 74 (323)
||.. .||+|.|+.+++.+|++++...++.++.|.++++....... -.+||||.+ + +.|.++|.-+++++.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K---~~vIgyF~~kdspey~~~~kva~~lr~dc~ 157 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSK---RTVIGYFPSKDSPEYDNLRKVASLLRDDCV 157 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhcccc---ceEEEEeccCCCchHHHHHHHHHHHhhccE
Confidence 5653 59999999999999999999999999999999988776343 268998863 3 367789999999999
Q ss_pred EEeecccchhhHhhcCCCCCCeEEEecCCCCC-CccccCCCC-HHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEE
Q 020623 75 FAVAKDFSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFD-EEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 152 (323)
Q Consensus 75 F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~-~~~y~g~~~-~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~ 152 (323)
|-+. +. ++.....-++. .+.++++.... ...|.|+++ .+.|+.||.+.+.|+|.++|-+|...+...|.|++++
T Consensus 158 f~V~--~g-D~~~~~~~~~~-~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflIL 233 (375)
T KOG0912|consen 158 FLVG--FG-DLLKPHEPPGK-NILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLIL 233 (375)
T ss_pred EEee--cc-ccccCCCCCCC-ceEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEE
Confidence 9776 32 22221111112 26777763222 236899875 6999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHH-HHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCH
Q 020623 153 IVEDETEEKSQKLVTTLK-AAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQG 231 (323)
Q Consensus 153 f~~~~~~e~~~~~~~~l~-~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~ 231 (323)
|...++.+..+.+..+++ ++-.+-+-++|+.+|+..|.+.+..||- .+.++|.|+|-+....|.++. . .+-..+
T Consensus 234 f~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgK-s~~DLPviaIDsF~Hmylfp~-f---~di~~p 308 (375)
T KOG0912|consen 234 FRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGK-SPDDLPVIAIDSFRHMYLFPD-F---NDINIP 308 (375)
T ss_pred EecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCC-CcccCcEEEeeccceeeecCc-h---hhhcCc
Confidence 988755544444443332 2222222299999999999999999998 789999999998888898863 2 233677
Q ss_pred HHHHHHHHHHHcCcccccccCCC
Q 020623 232 SQISRFLEGYREGRTEQKKVAGP 254 (323)
Q Consensus 232 ~~I~~Fi~~~~~Gkl~~~~kSeP 254 (323)
.+|.+|+.|..+|++++.+.-+|
T Consensus 309 GkLkqFv~DL~sgklHrefH~~~ 331 (375)
T KOG0912|consen 309 GKLKQFVADLHSGKLHREFHEGP 331 (375)
T ss_pred cHHHHHHHHHhCchhhHHhhcCC
Confidence 89999999999999999876664
No 7
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.69 E-value=7.4e-16 Score=137.51 Aligned_cols=231 Identities=17% Similarity=0.272 Sum_probs=154.0
Q ss_pred CcccccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC-h---hHHHHHHHhhcCceeEEee
Q 020623 3 GIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E---SVMSNLALKYKKKAWFAVA 78 (323)
Q Consensus 3 G~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-~---~~f~~~A~~~~~~~~F~~~ 78 (323)
|...+|+|+|+.++|++|..|-+++-+..|++-.....-++.... |.+|.|+.. . +.|-++|....--..|..+
T Consensus 110 d~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq--~ffVf~Gtge~PL~d~fidAASe~~~~a~FfSa 187 (468)
T KOG4277|consen 110 DHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQ--PFFVFFGTGEGPLFDAFIDAASEKFSVARFFSA 187 (468)
T ss_pred CeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccC--ceEEEEeCCCCcHHHHHHHHhhhheeeeeeecc
Confidence 467899999999999999999999998888653332334444443 456666543 2 4555566543212223222
Q ss_pred cccchhhHhhcC-CCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCC
Q 020623 79 KDFSEDTMVLYD-FDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE 157 (323)
Q Consensus 79 ~~~~~~~~~~~~-~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~ 157 (323)
+.+++..+. .+..|++.||+. +...+++ ..+.++|..||...++|-+...+..++..+-.+++-+++++++..
T Consensus 188 ---seeVaPe~~~~kempaV~VFKD--etf~i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEk 261 (468)
T KOG4277|consen 188 ---SEEVAPEENDAKEMPAVAVFKD--ETFEIED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEK 261 (468)
T ss_pred ---ccccCCcccchhhccceEEEcc--ceeEEEe-cCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccc
Confidence 445554443 234799999984 4444443 225688999999999999999999999998888776666555421
Q ss_pred ----ChhHHHHHHHHHHHHHHhCC-------CeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-CcceeeccCCCCC
Q 020623 158 ----TEEKSQKLVTTLKAAASANR-------ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENYLTVIGSESI 225 (323)
Q Consensus 158 ----~~e~~~~~~~~l~~~A~~~~-------~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~kY~~~~~~~~~ 225 (323)
+......+.+..+++|+.+| +++|+|+|+.++...+. + ..-..|.++|.|. +..|+..++.
T Consensus 262 hk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqil---M-~als~P~l~i~NtsnqeYfLse~d--- 334 (468)
T KOG4277|consen 262 HKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQIL---M-AALSEPHLFIFNTSNQEYFLSEDD--- 334 (468)
T ss_pred cccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHH---H-HhhcCCeEEEEecCchheeeccCC---
Confidence 11224567788888888765 39999999987754332 3 2345799999997 5578774321
Q ss_pred CCCCCHHHHHHHHHHHHcCcccc
Q 020623 226 DEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 226 ~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
....+.++|.+||++-..|-..-
T Consensus 335 ~qikniedilqFientsegI~d~ 357 (468)
T KOG4277|consen 335 PQIKNIEDILQFIENTSEGIDDE 357 (468)
T ss_pred hhhhhHHHHHHHHhccccccccc
Confidence 12357899999999955444433
No 8
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.64 E-value=1.7e-15 Score=120.19 Aligned_cols=105 Identities=10% Similarity=0.157 Sum_probs=91.0
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHh---CCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA---NRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~---~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
|.++|.+|+..|+.++.|+.++|.. .++.+.+.+.++++|++ +|+ ++|+++|.+.+.+.+++||+ ++.++|.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~---~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHD---KDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEec---chHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCE
Confidence 5789999999999999888866652 45568889999999999 999 99999999999889999999 7778999
Q ss_pred EEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 207 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 207 ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
++|++..+ ||.+. +++++.++|.+|+++|++|+
T Consensus 77 i~i~~~~~~~Ky~~~------~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDF------EDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCC------ccccCHHHHHHHHHHHhcCC
Confidence 99999843 77643 34689999999999999996
No 9
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.52 E-value=3.4e-13 Score=109.88 Aligned_cols=119 Identities=15% Similarity=0.252 Sum_probs=93.3
Q ss_pred CCeeecChhhH-HHhhcCCCcEEEE-EEeC---CChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCC
Q 020623 129 PLSVPINQDTL-NLLKDDKRKIVLA-IVED---ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~-~~~~~~~~~~v~~-f~~~---~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~ 201 (323)
|-+.+++.++. ...+.. +.+|++ |++. .+.+..+++.+.|+++|++|++ +.|+|+|+.++..++++||+ ++
T Consensus 2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-GG 79 (130)
T ss_pred CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-Cc
Confidence 56788887655 446644 568754 4431 2345567889999999999997 89999999998889999999 66
Q ss_pred CCCCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC-CC
Q 020623 202 SKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG-PS 255 (323)
Q Consensus 202 ~~~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe-P~ 255 (323)
.++|++++++.++ ||.++ .+++|.++|.+|+++|++|++....-++ |.
T Consensus 80 ~~~P~v~i~~~~~~KY~~~------~~~~t~e~i~~Fv~~~l~Gkl~~~~~~~~p~ 129 (130)
T cd02983 80 FGYPAMVAINFRKMKFATL------KGSFSEDGINEFLRELSYGRGPTLPVNGLPK 129 (130)
T ss_pred cCCCEEEEEecccCccccc------cCccCHHHHHHHHHHHHcCCcccccCCCCCC
Confidence 7899999999864 88754 4569999999999999999997654444 54
No 10
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.50 E-value=2.1e-13 Score=108.01 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=84.4
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeC---CChhHHHHHHHHHHHHHHhCC-C-eEEEEEcCcchhhHhhhcCCcCCCC--
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSK-- 203 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~---~~~e~~~~~~~~l~~~A~~~~-~-l~F~~vd~~~~~~~~~~~gl~~~~~-- 203 (323)
|+++|.+|...++. +|+++++++. .+.+..+.+.+.++++|+++| + ++|+|+|.+++.+.+++||| +..+
T Consensus 1 v~~~~~en~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~ 77 (111)
T cd03073 1 VGHRTKDNRAQFTK--KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGE 77 (111)
T ss_pred CCeeccchHHHhcc--CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCC
Confidence 57899999999975 6777777653 134566788999999999999 7 99999999999889999999 6656
Q ss_pred CCeEEEEeCC-cceeeccCCCCCCCCC-CHHHHHHHHHHHH
Q 020623 204 LPKMVVWDGN-ENYLTVIGSESIDEED-QGSQISRFLEGYR 242 (323)
Q Consensus 204 ~P~ivI~~~~-~kY~~~~~~~~~~~~~-t~~~I~~Fi~~~~ 242 (323)
.|+++|++.+ .||.. ++++ |.++|.+|+++|+
T Consensus 78 ~P~~~i~~~~~~KY~~-------~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 78 KPVVAIRTAKGKKYVM-------EEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCEEEEEeCCCCccCC-------CcccCCHHHHHHHHHHhC
Confidence 9999999864 58874 3357 9999999999984
No 11
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.23 E-value=8.4e-11 Score=91.29 Aligned_cols=99 Identities=19% Similarity=0.377 Sum_probs=79.2
Q ss_pred hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC--
Q 020623 136 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-- 212 (323)
Q Consensus 136 ~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-- 212 (323)
.+++..+...++|++++|... +.+..+.+...++++|+++++ +.|+|+|+++++++++.||+ +....|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~ 79 (103)
T cd02982 2 AETFFNYEESGKPLLVLFYNK-DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSD 79 (103)
T ss_pred HhHHhhhhhcCCCEEEEEEcC-ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEeccc
Confidence 455666655578898888764 333567888999999999998 99999999998899999999 6568999999998
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.++|.+. .+.++.++|.+|+++++
T Consensus 80 ~~k~~~~------~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 80 GKKYLMP------EEELTAESLEEFVEDFL 103 (103)
T ss_pred ccccCCC------ccccCHHHHHHHHHhhC
Confidence 4577653 23368999999999874
No 12
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.22 E-value=1.2e-10 Score=90.82 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=77.4
Q ss_pred CceecCChHHHHHHHH-hcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEec
Q 020623 28 DVSILNSDAEVSDFVE-NAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~-~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k 101 (323)
+|+.|+|.+++++|++ +++ +++|||+.+ + ..|.++|..+|+++.|+++ .++++...+++ ..|.|++++
T Consensus 1 ~v~~i~~~~~~e~~~~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~--~~~~~~~~~~~-~~~~i~l~~ 74 (102)
T cd03066 1 PVEIINSERELQAFENIEDD---IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFAT--FDSKVAKKLGL-KMNEVDFYE 74 (102)
T ss_pred CceEcCCHHHHHHHhcccCC---eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEE--CcHHHHHHcCC-CCCcEEEeC
Confidence 4688999999999998 777 479999864 2 4788999999999999998 56677777776 478999998
Q ss_pred CCCCCCccc-cCCCCHHHHHHHHHhhc
Q 020623 102 PSYNEHNIF-YGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 102 ~~~~~~~~y-~g~~~~~~L~~fI~~~~ 127 (323)
+..++...| .|+++.+.|.+||+.+.
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHhc
Confidence 755556679 78889999999999874
No 13
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.20 E-value=1.3e-10 Score=91.12 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=75.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
+++.|+|.+++++|+..++ +++|||+.+ + ..|.++|..+|+++.|+++ .++++...+++ .|.+++|++
T Consensus 1 ~~~~i~s~~~l~~f~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~--~~~~~~~~~~~--~~~ivl~~p 73 (104)
T cd03069 1 ASVELRTEAEFEKFLSDDD---ASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHT--SDKQLLEKYGY--GEGVVLFRP 73 (104)
T ss_pred CccccCCHHHHHHHhccCC---cEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEE--ChHHHHHhcCC--CCceEEEec
Confidence 3678899999999998877 479999864 1 4788999999999999998 46677777876 588999954
Q ss_pred ------CCCCCccccCCCCHHHHHHHHHhhc
Q 020623 103 ------SYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 103 ------~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
..++..+|.|+++.+.|.+||+.+.
T Consensus 74 ~~~~~k~de~~~~y~g~~~~~~l~~fi~~~~ 104 (104)
T cd03069 74 PRLSNKFEDSSVKFDGDLDSSKIKKFIRENI 104 (104)
T ss_pred hhhhcccCcccccccCcCCHHHHHHHHHhhC
Confidence 3344567999999999999998763
No 14
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.14 E-value=4.1e-10 Score=86.56 Aligned_cols=92 Identities=26% Similarity=0.351 Sum_probs=75.8
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC-----hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD-----ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+..|++.+++++++..++ +++|||+.+ ...|.++|..+++.+.|+++ .+.++..++++ +.|++++|++.
T Consensus 1 ~~~i~s~~~l~~~~~~~~---~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~--~~~~~~~~~~~-~~~~i~l~~~~ 74 (97)
T cd02981 1 VKELTSKEELEKFLDKDD---VVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT--SDKEVAKKLKV-KPGSVVLFKPF 74 (97)
T ss_pred CeecCCHHHHHHHhccCC---eEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE--ChHHHHHHcCC-CCCceEEeCCc
Confidence 457889999999998887 589999864 14788999999989999998 45677777776 46899999986
Q ss_pred CCCCccccCCCCHHHHHHHHHhh
Q 020623 104 YNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 104 ~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
.+.+..|+|+++.++|.+||..+
T Consensus 75 ~~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 75 EEEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred ccCCccCCCCCCHHHHHHHHHhC
Confidence 66777899999999999999864
No 15
>PTZ00102 disulphide isomerase; Provisional
Probab=99.13 E-value=1.8e-08 Score=99.32 Aligned_cols=222 Identities=14% Similarity=0.159 Sum_probs=155.6
Q ss_pred ccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC------hhHHHHHHHhhcCceeEEeecc
Q 020623 7 EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD------ESVMSNLALKYKKKAWFAVAKD 80 (323)
Q Consensus 7 eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~------~~~f~~~A~~~~~~~~F~~~~~ 80 (323)
.|.++.+.+.|.+|+....-|.+..++. +.+..+...... +++.+... .+.|.++|+++++++.|+.++.
T Consensus 212 ~~~~~~~~~~l~~fI~~~~~P~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~ 287 (477)
T PTZ00102 212 ELFMGKTKEELEEFVSTESFPLFAEINA-ENYRRYISSGKD---LVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDT 287 (477)
T ss_pred ccCCCCCHHHHHHHHHHcCCCceeecCc-cchHHHhcCCcc---EEEEecCHHHHHHHHHHHHHHHHhccCceEEEEEec
Confidence 3445569999999999999999999965 666666655542 22222221 1367899999999998887743
Q ss_pred cc-h-hhHhhcCCCCCCeEEEecCCCCCCccccCC----CCHHHHHHHHHhhcC------------C-----CeeecChh
Q 020623 81 FS-E-DTMVLYDFDKVPALVALQPSYNEHNIFYGP----FDEEFLEEFIKQNFL------------P-----LSVPINQD 137 (323)
Q Consensus 81 ~~-~-~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~----~~~~~L~~fI~~~~~------------P-----lv~~~t~~ 137 (323)
.. . .+...+|+...|++++... +.+..+.+. .+.+.|.+|++...- | .+..++.+
T Consensus 288 ~~~~~~~~~~~gi~~~P~~~i~~~--~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~ 365 (477)
T PTZ00102 288 EQFGSHAKEHLLIEEFPGLAYQSP--AGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGN 365 (477)
T ss_pred hhcchhHHHhcCcccCceEEEEcC--CcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEeccc
Confidence 21 1 2556788888898877653 334445443 578999999995331 2 36678888
Q ss_pred hHHHh-hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 138 TLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 138 ~~~~~-~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
++... ...++++++.|... -=..-+.+...+.++|+.+++ +.|+++|++.....++.+++ ...|.+++++.+
T Consensus 366 ~f~~~v~~~~k~vlv~f~a~-wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v---~~~Pt~~~~~~~ 441 (477)
T PTZ00102 366 TFEEIVFKSDKDVLLEIYAP-WCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW---SAFPTILFVKAG 441 (477)
T ss_pred chHHHHhcCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC---cccCeEEEEECC
Confidence 99876 56678888777653 113346677788899988763 89999999876666778888 578999999876
Q ss_pred ccee-eccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 214 ENYL-TVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 214 ~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
++-. .. .+..+.++|.+||+.....
T Consensus 442 ~~~~~~~------~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 442 ERTPIPY------EGERTVEGFKEFVNKHATN 467 (477)
T ss_pred CcceeEe------cCcCCHHHHHHHHHHcCCC
Confidence 5321 11 3457899999999997654
No 16
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=99.01 E-value=2.3e-09 Score=84.43 Aligned_cols=93 Identities=18% Similarity=0.319 Sum_probs=72.7
Q ss_pred CceecCChHHHHHHHHhc-CCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEec
Q 020623 28 DVSILNSDAEVSDFVENA-GTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~-~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k 101 (323)
|++.|+|.+++++|+..+ + +++|||+.+ + ..|.++|..+|+++.|+++ .++++..++++ ..|.+++|+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~---~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t--~~~~~~~~~~~-~~~~vvl~r 74 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDD---VIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHT--FDSEIFKSLKV-SPGQLVVFQ 74 (107)
T ss_pred CceEcCCHHHHHHHHhcCCC---EEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEE--ChHHHHHhcCC-CCCceEEEC
Confidence 578899999999999887 6 579999864 1 4788999999999999998 46677777777 468899984
Q ss_pred C-----CCC-CCccccCC-CCHHH-HHHHHHhh
Q 020623 102 P-----SYN-EHNIFYGP-FDEEF-LEEFIKQN 126 (323)
Q Consensus 102 ~-----~~~-~~~~y~g~-~~~~~-L~~fI~~~ 126 (323)
+ +++ ...+|.|. .+.++ |.+||+.|
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 3 244 45578877 66655 99999875
No 17
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.88 E-value=6.1e-07 Score=87.74 Aligned_cols=229 Identities=15% Similarity=0.166 Sum_probs=154.3
Q ss_pred ccCCCC--ChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecC-Ch-------hHHHHHHHhhcC-ceeE
Q 020623 7 EYYGPR--KAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL-DE-------SVMSNLALKYKK-KAWF 75 (323)
Q Consensus 7 eY~G~R--~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~~-------~~f~~~A~~~~~-~~~F 75 (323)
.|.|.- +.+.|..|+....-|.+..++ ...+....+.... .+++.+.. +. +.+..+|.++++ .+.|
T Consensus 195 ~~~~~~~~~~~~l~~fi~~~~~p~v~~~~-~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f 271 (462)
T TIGR01130 195 KVDGEMDTDVSDLEKFIRAESLPLVGEFT-QETAAKYFESGPL--VVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNF 271 (462)
T ss_pred cccCcccCCHHHHHHHHHHcCCCceEeeC-CcchhhHhCCCCc--eeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEE
Confidence 466655 568999999999999999995 5666676665532 22333322 21 367889999986 7888
Q ss_pred Eeeccc-chhhHhhcCCC--CCCeEEEecCCCCCCccccC-CCCHHHHHHHHHhhcC-----------------CCeeec
Q 020623 76 AVAKDF-SEDTMVLYDFD--KVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNFL-----------------PLSVPI 134 (323)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~--~~p~ivv~k~~~~~~~~y~g-~~~~~~L~~fI~~~~~-----------------Plv~~~ 134 (323)
+..+.. -..++..+++. ..|.++++.........+.+ .++.+.|.+||.+..- ..+..+
T Consensus 272 ~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l 351 (462)
T TIGR01130 272 AVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVL 351 (462)
T ss_pred EEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEe
Confidence 877431 23456667775 58999998753213445554 7889999999987531 246678
Q ss_pred ChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 135 NQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 135 t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+..++..+. ..++++++.|... --..-+.+...+.++|+.+++ +.|+.+|++.. .... +++ ...|.+++
T Consensus 352 ~~~~f~~~v~~~~~~vlv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-~~~~-~~i---~~~Pt~~~ 425 (462)
T TIGR01130 352 VGKNFDEIVLDETKDVLVEFYAP-WCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-DVPP-FEV---EGFPTIKF 425 (462)
T ss_pred eCcCHHHHhccCCCeEEEEEECC-CCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-ccCC-CCc---cccCEEEE
Confidence 888888764 4467777766652 223345677788888888763 88999998753 3333 667 57899999
Q ss_pred EeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 210 WDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 210 ~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
+...++.... ...+..+.++|.+|++.....+++.
T Consensus 426 ~~~~~~~~~~----~~~g~~~~~~l~~~l~~~~~~~~~~ 460 (462)
T TIGR01130 426 VPAGKKSEPV----PYDGDRTLEDFSKFIAKHATFPLEG 460 (462)
T ss_pred EeCCCCcCce----EecCcCCHHHHHHHHHhcCCCCCcC
Confidence 8765432110 0123578899999999988776654
No 18
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.2e-07 Score=92.20 Aligned_cols=216 Identities=17% Similarity=0.199 Sum_probs=148.5
Q ss_pred HHHHHHHHhc----CCCceecCChHHHHHHHHhcCCcccEEEEecC-C-------hhHHHHHHHhhcCc---eeEEeecc
Q 020623 16 LLVRYLKKFV----APDVSILNSDAEVSDFVENAGTFFPLFIGFGL-D-------ESVMSNLALKYKKK---AWFAVAKD 80 (323)
Q Consensus 16 ~Iv~~l~k~~----~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~-------~~~f~~~A~~~~~~---~~F~~~~~ 80 (323)
.++.|+.-.. +..|.+|+ .+.+++++..++. ++|-|+. . .+.|.++|..++.. +..+-+++
T Consensus 10 ~~~~~~~~a~~~~~~~~Vl~Lt-~dnf~~~i~~~~~---vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa 85 (493)
T KOG0190|consen 10 LPVASSEAASVPKAEEDVLVLT-KDNFKETINGHEF---VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA 85 (493)
T ss_pred cchhhhhhhhcCCcccceEEEe-cccHHHHhccCce---EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec
Confidence 4455555554 33477784 6999999999984 5666643 2 35899999988764 44555544
Q ss_pred c-chhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecCh-hhHHHhhcCCCcEEEEEEeCCC
Q 020623 81 F-SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ-DTLNLLKDDKRKIVLAIVEDET 158 (323)
Q Consensus 81 ~-~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~-~~~~~~~~~~~~~v~~f~~~~~ 158 (323)
. +.+++.+|++.++|++.+||++. ....|.|+.+.+.|.+|+++.+.|....+.. +.+..+.....-+++.|..+
T Consensus 86 t~~~~~~~~y~v~gyPTlkiFrnG~-~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d-- 162 (493)
T KOG0190|consen 86 TEESDLASKYEVRGYPTLKIFRNGR-SAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKD-- 162 (493)
T ss_pred chhhhhHhhhcCCCCCeEEEEecCC-cceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecc--
Confidence 3 56788999999999999999842 2578999999999999999999999999984 56666665533333444332
Q ss_pred hhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-CcceeeccCCCCCCCCCCHHHHHH
Q 020623 159 EEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NENYLTVIGSESIDEEDQGSQISR 236 (323)
Q Consensus 159 ~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~kY~~~~~~~~~~~~~t~~~I~~ 236 (323)
-+ ... ..+..+|...++ +.|++... ..++..+++ .....|.+++.+. +.++... ++.++.+.|.+
T Consensus 163 ~~-~~~--~~~~~~a~~l~~d~~F~~ts~---~~~~~~~~~-~~~~~~~i~l~kk~d~~~~~~------~~~~~~~~l~~ 229 (493)
T KOG0190|consen 163 LE-SLA--ESFFDAASKLRDDYKFAHTSD---SDVAKKLEL-NTEGTFPIVLFKKFDELLVKY------DGSFTPELLKK 229 (493)
T ss_pred cc-cch--HHHHHHHHhccccceeeccCc---HhHHhhccC-CCCCcceEEeccccccchhhc------ccccCHHHHHH
Confidence 11 112 456667777776 99985443 355677777 3333677788776 3333322 34688899999
Q ss_pred HHHHHHcCccccccc
Q 020623 237 FLEGYREGRTEQKKV 251 (323)
Q Consensus 237 Fi~~~~~Gkl~~~~k 251 (323)
||+-...+-+..+..
T Consensus 230 Fi~~~~~plv~~ft~ 244 (493)
T KOG0190|consen 230 FIQENSLPLVTEFTV 244 (493)
T ss_pred HHHHhcccccceecc
Confidence 999887665554443
No 19
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.79 E-value=8.6e-08 Score=73.40 Aligned_cols=108 Identities=16% Similarity=0.259 Sum_probs=82.2
Q ss_pred CCeeecChhhHHHhhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHh----hhcCCc
Q 020623 129 PLSVPINQDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFA----DTFEAN 199 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~----~~~gl~ 199 (323)
|.+.+++++++....... .-++++|...++ .++-++...|+++|+++.+ +.|+|+|.+.|+-+. +.|||+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~d-pdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~ID 79 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEED-PDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGID 79 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCC-ccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcc
Confidence 667888999988876543 456778887544 3467899999999999874 999999999997543 578994
Q ss_pred CCCCCCeEEEEeCC---cceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 200 KKSKLPKMVVWDGN---ENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 200 ~~~~~P~ivI~~~~---~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
-..|+|.++|.. +.++.+++.+ +..|.+.++.||++++
T Consensus 80 --l~~PqIGVV~vtdadSvW~~m~~~~---d~~t~~~Le~WiedVL 120 (120)
T cd03074 80 --LFRPQIGVVNVTDADSVWMEMDDDE---DLPTAEELEDWIEDVL 120 (120)
T ss_pred --cCCCceeeEecccccceeEeccccc---ccCcHHHHHHHHHhhC
Confidence 457999999962 4676664432 3378999999999874
No 20
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.44 E-value=1.7e-05 Score=70.16 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=113.6
Q ss_pred hHHHHHHHhhcCcee--EEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhc--CCCeeec
Q 020623 60 SVMSNLALKYKKKAW--FAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF--LPLSVPI 134 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~--F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~--~Plv~~~ 134 (323)
..++++|..+. ... +...+ +...+++.+|++...|++++|+++......|.|....+.|.+||.... -+.-..+
T Consensus 42 p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L 120 (215)
T TIGR02187 42 QLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL 120 (215)
T ss_pred HHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC
Confidence 46788888874 333 33332 246788999999999999999874222235778777788999988662 2344567
Q ss_pred ChhhHHHhhcCCCcEEEE-EEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 135 NQDTLNLLKDDKRKIVLA-IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~-f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
++.+...+-..++|+.+. |+.. .-..-+.+...+++++.++.++.|..+|.+.++...+.+|+ ...|.+++....
T Consensus 121 ~~~~~~~l~~~~~pv~I~~F~a~-~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V---~~vPtl~i~~~~ 196 (215)
T TIGR02187 121 SEKTVELLQSLDEPVRIEVFVTP-TCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGV---MSVPKIVINKGV 196 (215)
T ss_pred CHHHHHHHHhcCCCcEEEEEECC-CCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCC---ccCCEEEEecCC
Confidence 777777766666777654 5542 11222455567888888876699999999988888899999 578999886533
Q ss_pred cceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 214 ENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 214 ~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.+|. | ....+.+.+|+++
T Consensus 197 ~~~~---G------~~~~~~l~~~l~~ 214 (215)
T TIGR02187 197 EEFV---G------AYPEEQFLEYILS 214 (215)
T ss_pred EEEE---C------CCCHHHHHHHHHh
Confidence 2221 2 3567788888764
No 21
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.42 E-value=3.4e-06 Score=72.01 Aligned_cols=121 Identities=23% Similarity=0.345 Sum_probs=89.1
Q ss_pred CCcccccCCC-CChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecC-Ch-------hHHHHHHHhhcCc
Q 020623 2 HGIPTEYYGP-RKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL-DE-------SVMSNLALKYKKK 72 (323)
Q Consensus 2 ~G~~~eY~G~-R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~~-------~~f~~~A~~~~~~ 72 (323)
++.+..|.|. .+.+.|.+|+.+..-|.+..++ .+.+..+...... ++++.|.. +. ..+.++|.++++.
T Consensus 51 ~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t-~~n~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 127 (184)
T PF13848_consen 51 DEKPVVYDGDKFTPEELKKFIKKNSFPLVPELT-PENFEKLFSSPKP--PVLILFDNKDNESTEAFKKELQDIAKKFKGK 127 (184)
T ss_dssp TTSEEEESSSTTSHHHHHHHHHHHSSTSCEEES-TTHHHHHHSTSSE--EEEEEEETTTHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCceecccccCCHHHHHHHHHHhccccccccc-hhhHHHHhcCCCc--eEEEEEEcCCchhHHHHHHHHHHHHHhcCCe
Confidence 3457889998 8999999999999999999995 5788888777641 13444432 21 2567889999988
Q ss_pred eeEEeeccc-chhhHhhcCCC--CCCeEEEecCCCCCCc-cccCCCCHHHHHHHHHh
Q 020623 73 AWFAVAKDF-SEDTMVLYDFD--KVPALVALQPSYNEHN-IFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 73 ~~F~~~~~~-~~~~~~~~~~~--~~p~ivv~k~~~~~~~-~y~g~~~~~~L~~fI~~ 125 (323)
+.|..++.. .++++..+|+. ..|.++++....+... .+.|+++.+.|.+|+++
T Consensus 128 ~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 128 INFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 888877432 35677788876 7899999986433322 23588999999999974
No 22
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.34 E-value=1.5e-05 Score=61.16 Aligned_cols=100 Identities=8% Similarity=0.253 Sum_probs=78.5
Q ss_pred eeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
|..+|.+++...... ++++++.|... .-..-+.+...|.++|+.+++ +.|+.+|.+....+++.|++ ...|.++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~-~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAP-WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV---KSVPTII 76 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEEST-TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC---SSSSEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCC-CCCccccccceecccccccccccccchhhhhccchhhhccCC---CCCCEEE
Confidence 467899999987765 67887777763 234456788899999999995 99999999988889999999 6899999
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
++...+..... .+..+.++|.+||++
T Consensus 77 ~~~~g~~~~~~------~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 77 FFKNGKEVKRY------NGPRNAESLIEFIEK 102 (103)
T ss_dssp EEETTEEEEEE------ESSSSHHHHHHHHHH
T ss_pred EEECCcEEEEE------ECCCCHHHHHHHHHc
Confidence 98875432222 234789999999985
No 23
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=98.27 E-value=1.4e-05 Score=61.37 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=71.3
Q ss_pred eecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhC----C----C--eEEEEEcCcchhhHh-hhcCCcC
Q 020623 132 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----R----E--LVFCYVGIKQFADFA-DTFEANK 200 (323)
Q Consensus 132 ~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~----~----~--l~F~~vd~~~~~~~~-~~~gl~~ 200 (323)
..+|+.+.-.+.. .|-+++|++.++....+...+.|+.+|++. + + +.|.+...++....+ ++.+++
T Consensus 2 ~~Lse~~a~~Ln~--~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~- 78 (116)
T cd03071 2 LELSESNAVQLNE--GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLP- 78 (116)
T ss_pred ccccHHHHHhhcC--CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCC-
Confidence 3567777766654 577788887543324677777888777752 1 2 777776655555544 566784
Q ss_pred CCCCCeEEEEeC-C-cceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 201 KSKLPKMVVWDG-N-ENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 201 ~~~~P~ivI~~~-~-~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
..-|.++|+|. + ++|..+ ..++|.+++.+|+.+|++
T Consensus 79 -d~~P~LviLDip~r~~~v~~------~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 79 -EAAPLLTILDMSARAKYVMD------VEEITPAIVEAFVSDFLA 116 (116)
T ss_pred -ccCceEEEEeccccceEeCc------hHhcCHHHHHHHHHHhhC
Confidence 77899999996 3 467664 356999999999999974
No 24
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.19 E-value=3.6e-05 Score=59.39 Aligned_cols=99 Identities=10% Similarity=0.110 Sum_probs=75.2
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
|-+.++|..++......++++++.|... .-..-..+...+.++|+++++ +.|+.+|++..+.+++.+++ ...|.+
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~-wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSP-RCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV---NSYPSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECC-CChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC---CccCEE
Confidence 5678899999998877667777777653 223456788899999999998 99999999988888999999 589999
Q ss_pred EEEeCCcceeeccCCCCCCCCCCHHHHHHH
Q 020623 208 VVWDGNENYLTVIGSESIDEEDQGSQISRF 237 (323)
Q Consensus 208 vI~~~~~kY~~~~~~~~~~~~~t~~~I~~F 237 (323)
+++......... .+..+.+.|.+|
T Consensus 77 ~~~~~g~~~~~~------~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKY------YGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccC------CCCCCHHHHHhh
Confidence 888643221111 345678888877
No 25
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.17 E-value=0.00032 Score=64.93 Aligned_cols=198 Identities=13% Similarity=0.112 Sum_probs=120.3
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecC----Chh---------HHHHHHHhhcC--ceeEEeecc-cchhhHhhcCCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGL----DES---------VMSNLALKYKK--KAWFAVAKD-FSEDTMVLYDFD 92 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~----~~~---------~f~~~A~~~~~--~~~F~~~~~-~~~~~~~~~~~~ 92 (323)
|..| |.+++++++++.++ .+|.|.. +.. .+-++|.+... .+-||.++. -+..+++++|+.
T Consensus 36 Vi~L-neKNfk~~lKkyd~---l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 36 VIDL-NEKNFKRALKKYDV---LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp CEEE--TTTHHHHHHH-SE---EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred eEEc-chhHHHHHHHhhcE---EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 7788 57999999999985 5555542 111 23355554432 367887753 366789999998
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLK 170 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~ 170 (323)
..++|.+|+. ++...|+|.++.+-|..||..-.-.+|..++.+.=.+.|. ...+-++.|...+ .+. ..+.+.
T Consensus 112 E~~SiyVfkd--~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~---~s~-~yk~Fe 185 (383)
T PF01216_consen 112 EEGSIYVFKD--GEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSE---DSE-HYKEFE 185 (383)
T ss_dssp STTEEEEEET--TEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SST---TSH-HHHHHH
T ss_pred ccCcEEEEEC--CcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCC---CcH-HHHHHH
Confidence 8999999985 6777899999999999999999989999998754333222 1245566666532 223 447899
Q ss_pred HHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC--CcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccc
Q 020623 171 AAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG--NENYLTVIGSESIDEEDQGSQISRFLEGYREGRTE 247 (323)
Q Consensus 171 ~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~--~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~ 247 (323)
++|..|.. +.|.-+-. +.++..||+ + +--+-...+ +.--..+ ....+.+.|.+||+.-..-.++
T Consensus 186 eAAe~F~p~IkFfAtfd---~~vAk~L~l-K---~nev~fyepF~~~pi~ip------~~p~~e~e~~~fi~~h~rptlr 252 (383)
T PF01216_consen 186 EAAEHFQPYIKFFATFD---KKVAKKLGL-K---LNEVDFYEPFMDEPITIP------GKPYTEEELVEFIEEHKRPTLR 252 (383)
T ss_dssp HHHHHCTTTSEEEEE-S---HHHHHHHT--S---TT-EEEE-TTSSSEEEES------SSS--HHHHHHHHHHT-S-SEE
T ss_pred HHHHhhcCceeEEEEec---chhhhhcCc-c---ccceeeeccccCCCccCC------CCCCCHHHHHHHHHHhchhHhh
Confidence 99999988 88765432 456778888 4 223444554 2222222 2357899999999988766555
Q ss_pred cc
Q 020623 248 QK 249 (323)
Q Consensus 248 ~~ 249 (323)
..
T Consensus 253 kl 254 (383)
T PF01216_consen 253 KL 254 (383)
T ss_dssp E-
T ss_pred hC
Confidence 43
No 26
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.16 E-value=3e-05 Score=61.61 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=71.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecC---Ch---hHHHHHHHhhcC---ceeEEeecc------cchhhHhhcCCC-
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGL---DE---SVMSNLALKYKK---KAWFAVAKD------FSEDTMVLYDFD- 92 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~---~~---~~f~~~A~~~~~---~~~F~~~~~------~~~~~~~~~~~~- 92 (323)
+..| +.+.++++++.++. ++|-|+. .- +.|+++|.++.. .+.++.++. .+.+++.+|+++
T Consensus 3 ~v~L-~~~nF~~~v~~~~~---vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDL-DTVTFYKVIPKFKY---SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeEC-ChhhHHHHHhcCCc---EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence 5667 46899999988884 6777754 22 478889887732 466776643 246799999998
Q ss_pred -CCCeEEEecCCC-CCCccccCC-CCHHHHHHHHHhh
Q 020623 93 -KVPALVALQPSY-NEHNIFYGP-FDEEFLEEFIKQN 126 (323)
Q Consensus 93 -~~p~ivv~k~~~-~~~~~y~g~-~~~~~L~~fI~~~ 126 (323)
+.|+|.+|+++. ++...|.|+ .+.+.|.+||+++
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 899999999852 345689996 9999999999986
No 27
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.07 E-value=2.8e-05 Score=59.57 Aligned_cols=94 Identities=24% Similarity=0.453 Sum_probs=71.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv 99 (323)
|..+ +.+++++.+.+.+. +++|.|... .+.|.++|..+.+.+.|+.++. ...+++.++++...|++++
T Consensus 1 v~~l-t~~~f~~~i~~~~~--~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVL-TDENFEKFINESDK--PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEE-STTTHHHHHTTTSS--EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CEEC-CHHHHHHHHHccCC--CEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEE
Confidence 3556 56889998887332 577777643 2478899999887788877743 3567889999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|+++ .....|.|..+.+.|.+||++|
T Consensus 78 ~~~g-~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNG-KEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETT-EEEEEEESSSSHHHHHHHHHHH
T ss_pred EECC-cEEEEEECCCCHHHHHHHHHcC
Confidence 9873 2233678999999999999986
No 28
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.02 E-value=0.00012 Score=56.64 Aligned_cols=100 Identities=16% Similarity=0.280 Sum_probs=74.4
Q ss_pred CCeeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 129 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 129 Plv~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
|.+.+++..++.... ..++++++.|... .-..-+.+...+.++|+++++ +.|+.+|++....+++.+|+ ...|.
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i---~~~Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAP-WCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI---RAYPT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC---CcccE
Confidence 567789999998864 4456777777653 223456788899999999987 99999999988888899999 57999
Q ss_pred EEEEeCC-cceeeccCCCCCCCCCC-HHHHHHHH
Q 020623 207 MVVWDGN-ENYLTVIGSESIDEEDQ-GSQISRFL 238 (323)
Q Consensus 207 ivI~~~~-~kY~~~~~~~~~~~~~t-~~~I~~Fi 238 (323)
++++..+ +.-... .+..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~------~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSY------NGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEc------cCCCCCHHHHHhhC
Confidence 9998875 322222 23344 78888875
No 29
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.99 E-value=8.8e-05 Score=57.40 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=70.0
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
|.+..+ +.+++++.+.+.+. +++|-|... ...|.++|.++.+.+.|+..+. ...+++.++++...|++
T Consensus 1 ~~v~~l-~~~~f~~~i~~~~~--~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 1 PSVITL-TPEDFPELVLNRKE--PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred CcceEc-CHHHHHHHHhcCCC--eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 456778 57889888766543 577777543 2478899999877777876643 35678889999999999
Q ss_pred EEecCCCCCCccccCCCC-HHHHHHHH
Q 020623 98 VALQPSYNEHNIFYGPFD-EEFLEEFI 123 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~-~~~L~~fI 123 (323)
++|+++.+....|.|..+ .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999874344556889876 89999986
No 30
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.90 E-value=0.00029 Score=54.06 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=71.7
Q ss_pred eeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
|.+++.+++...... +.++++.|... .-..-+.+...+.++|+++++ +.|+.+|.+..+.+++.||+ ...|.++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~-~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i---~~~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAP-WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV---RGFPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECC-CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC---CccCEEE
Confidence 567888889876544 44466666552 223456777889999999887 99999999988888899999 5799999
Q ss_pred EEeCC-cceeeccCCCCCCCCCCHHHHHHHH
Q 020623 209 VWDGN-ENYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 209 I~~~~-~kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
+.+.. ...... .+..+.++|.+|+
T Consensus 78 ~~~~~~~~~~~~------~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDY------QGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeec------CCCCCHHHHHHHh
Confidence 98765 222222 3457888999886
No 31
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.89 E-value=0.0001 Score=66.95 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCce-----eEEeecc-cchhhHhhcCCCCCCeEEEec
Q 020623 36 AEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKA-----WFAVAKD-FSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~-----~F~~~~~-~~~~~~~~~~~~~~p~ivv~k 101 (323)
+.++..+..++ +++|.|..+ .+.|.++|.+++.++ .+|.++. ..++++.+|.+.++|++.+|+
T Consensus 4 ~N~~~il~s~e---lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 4 ENIDSILDSNE---LVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccHHHhhccce---EEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 45677888887 478888653 358999998887654 4565543 467789999999999999999
Q ss_pred CCCCCCccccCCCCHHHHHHHHHhhcCCCeeecChh-hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-e
Q 020623 102 PSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQD-TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-L 179 (323)
Q Consensus 102 ~~~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~-~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l 179 (323)
++.=-.-.|.|..+.+.|.+||++..--.+.++..- ....+...++..++++....+. .+| +.++++|.-+|+ .
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kds---pey-~~~~kva~~lr~dc 156 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDS---PEY-DNLRKVASLLRDDC 156 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCC---chH-HHHHHHHHHHhhcc
Confidence 854445568899999999999998877667777653 3444544234445555442122 333 456666666654 4
Q ss_pred EE
Q 020623 180 VF 181 (323)
Q Consensus 180 ~F 181 (323)
.|
T Consensus 157 ~f 158 (375)
T KOG0912|consen 157 VF 158 (375)
T ss_pred EE
Confidence 44
No 32
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0012 Score=63.54 Aligned_cols=174 Identities=17% Similarity=0.245 Sum_probs=125.0
Q ss_pred hHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCC--------
Q 020623 60 SVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL-------- 130 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Pl-------- 130 (323)
..|.++|..++....++.++. ...+++..|++.+.|++.+|+++ .....|.|..+.+.+..|+....-+.
T Consensus 67 ~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (383)
T KOG0191|consen 67 PTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGE 145 (383)
T ss_pred hHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhccccccccCCc
Confidence 578899999998777777743 46788999999999999999985 45667888888899999999887654
Q ss_pred eeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--C-eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+.+++..++..+... ..+.++.|... --..-+.+...+.++|+.+. + +..+-+|++......+.+++ ..+|.
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aP-wc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v---~~~Pt 221 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAP-WCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEV---RGYPT 221 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEecc-ccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcc---cCCce
Confidence 555555666654332 33334444332 11234566678888888775 3 88888888766677888888 68999
Q ss_pred EEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 207 MVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 207 ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
+.+...+.+ +++ ++.-+.+.|.+|+++...-.
T Consensus 222 ~~~f~~~~~~~~~~-------~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYY-------SGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred EEEecCCCcccccc-------cccccHHHHHHHHHhhcCCC
Confidence 987776554 222 23468899999999987764
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.87 E-value=0.00027 Score=54.26 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=68.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv 99 (323)
|..+ +.+++++++.+.+. +++|.|... .+.|.++|.++...+.|+..+. ...+++.++++.+.|++++
T Consensus 2 v~~l-~~~~~~~~i~~~~~--~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 2 VVEL-TDSNFDKKVLNSDD--VWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred eEEc-CHHhHHHHHhcCCC--cEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 5667 46888888876653 466666542 2467888988877777776632 3567888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHH
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
|+++......|.|+.+.+.|.+|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 79 FGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ECCCCcceeecCCCCCHHHHHHHh
Confidence 987534455788999999999997
No 34
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.87 E-value=0.00022 Score=58.05 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC-----h-------hHHHHHHHhhcCc-eeEEeeccc-chhhHhhcCCC
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-----E-------SVMSNLALKYKKK-AWFAVAKDF-SEDTMVLYDFD 92 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-----~-------~~f~~~A~~~~~~-~~F~~~~~~-~~~~~~~~~~~ 92 (323)
|-+.+|++.+.+++....++ .++|+|.++ . +.+.++|++++.. +.|..++.. ...+...+|+.
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~---~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~ 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQ---LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIG 78 (130)
T ss_pred CceEEecCHHHHHhhccCCC---eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCC
Confidence 55788999888888887765 589998652 1 2678999999999 888877432 23467788874
Q ss_pred --CCCeEEEecCCCCCCcc-ccCCCCHHHHHHHHHhhcCCC
Q 020623 93 --KVPALVALQPSYNEHNI-FYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 93 --~~p~ivv~k~~~~~~~~-y~g~~~~~~L~~fI~~~~~Pl 130 (323)
..|++++++.. +.++. +.|+++.+.|.+|+.+..-.-
T Consensus 79 ~~~~P~v~i~~~~-~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 79 GFGYPAMVAINFR-KMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred ccCCCEEEEEecc-cCccccccCccCHHHHHHHHHHHHcCC
Confidence 47999999873 32544 679999999999998775443
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=97.83 E-value=0.00045 Score=56.80 Aligned_cols=101 Identities=11% Similarity=0.207 Sum_probs=74.8
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+..++.+++..+...++++++.|... .-..-..+...|.++++++.+ +.|+.+|.+..+.+++.|++ ...|.+++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~-wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V---~~~Ptlii 112 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAP-WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI---RSIPTIMI 112 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC---CccCEEEE
Confidence 44567778887777677777777653 223345677889999999887 99999999988888999999 57999998
Q ss_pred EeCCcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 210 WDGNENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 210 ~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.+..+..... .+..+.+.|.+|++..
T Consensus 113 ~~~G~~v~~~------~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNGQVVDML------NGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECCEEEEEE------cCCCCHHHHHHHHHHh
Confidence 8743333322 2346788999999865
No 36
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.83 E-value=0.0003 Score=53.65 Aligned_cols=97 Identities=11% Similarity=0.172 Sum_probs=72.2
Q ss_pred cChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEE
Q 020623 134 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 134 ~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~ 210 (323)
++.+++......++++++.|... .-..-+.+...+.++|+.+++ +.|+.+|.+..+.+.+.||+ ...|.++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~-~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i---~~~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAP-WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV---SGFPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECC-CCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC---CcCCEEEEe
Confidence 46678888776677777777653 223345566778888888774 99999999888888889999 579999998
Q ss_pred eCCcc-eeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 211 DGNEN-YLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 211 ~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
+.++. +.+ .+..+.++|..|+++.
T Consensus 77 ~~~~~~~~~-------~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKKPVDY-------EGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCcceee-------cCCCCHHHHHHHHHhc
Confidence 87653 333 3457888999999864
No 37
>PRK09381 trxA thioredoxin; Provisional
Probab=97.75 E-value=0.00079 Score=52.47 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=74.1
Q ss_pred eeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
+.+++.+++.. +...++++++.|... .-..-..+...++++|+++++ +.|+.+|.+..+.++..|++ ..+|.++
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~-~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~ 80 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAE-WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL 80 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECC-CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC---CcCCEEE
Confidence 56778888875 455567777777653 122346677899999999987 99999999887788888998 5799999
Q ss_pred EEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 209 VWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 209 I~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
++.... .+.+ .+..+.+.|.+|++..+
T Consensus 81 ~~~~G~~~~~~-------~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATK-------VGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEe-------cCCCCHHHHHHHHHHhc
Confidence 886433 2322 23467888999988764
No 38
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.69 E-value=0.00068 Score=52.65 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=67.7
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-c--chhhHhhcCCCCCCeE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-F--SEDTMVLYDFDKVPAL 97 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~--~~~~~~~~~~~~~p~i 97 (323)
+..++ .+++++.+.+.+. +++|-|... ...|.++|..+.+.+.|+..+. . ..+++.++++...|++
T Consensus 2 v~~l~-~~~~~~~i~~~~~--~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYELT-PKNFDKVVHNTNY--TTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEcc-hhhHHHHHhcCCC--eEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 56674 5788888877664 567777542 2478899998877666655432 2 4567889999999999
Q ss_pred EEecCCCC----CCccccCCCCHHHHHHHHH
Q 020623 98 VALQPSYN----EHNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 98 vv~k~~~~----~~~~y~g~~~~~~L~~fI~ 124 (323)
++|+++.. ....|.|+.+.+.|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99987531 2346789999999999984
No 39
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.68 E-value=0.0012 Score=52.19 Aligned_cols=105 Identities=10% Similarity=0.175 Sum_probs=73.2
Q ss_pred CeeecCh-hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 130 LSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 130 lv~~~t~-~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
.+.+++. +.+......++++++.|... .-..-+.+...|.++|++++++.|+.+|.+..+.+++.|++ ..+|.++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~-~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v---~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHP-EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNI---KVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECC-CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCC---ccCCEEE
Confidence 4455555 66666666667777777653 22334667789999999998899999999988888999999 5899999
Q ss_pred EEeCCcceeeccCCCCC--CCCCCHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESI--DEEDQGSQISRFL 238 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~--~~~~t~~~I~~Fi 238 (323)
+....+.-....|..++ .+.++.++|..|+
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 88754311111122221 2468889999886
No 40
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.68 E-value=0.00078 Score=52.53 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=69.5
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhC----C--C-eEEEEEcCcchhhHhhhcCCcCCCC
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----R--E-LVFCYVGIKQFADFADTFEANKKSK 203 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~----~--~-l~F~~vd~~~~~~~~~~~gl~~~~~ 203 (323)
+.+++.+++...+..++++++.|... --..-..+...++++|+.+ + + +.|+.+|++....+++.||+ ..
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a~-wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v---~~ 78 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYAD-WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI---NK 78 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEECC-CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC---Cc
Confidence 67889999999887777777767653 1233456667788887753 2 3 89999999988888999999 58
Q ss_pred CCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 204 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 204 ~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.|.+++..... ..... .+.-+.+.|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~------~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREY------RGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceec------CCCCCHHHHHhhC
Confidence 89999876533 11111 2345778888875
No 41
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.68 E-value=0.00036 Score=55.35 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=68.2
Q ss_pred CCCceecCChHHHHHH---HHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhH-hhcCCC
Q 020623 26 APDVSILNSDAEVSDF---VENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTM-VLYDFD 92 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~f---l~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~-~~~~~~ 92 (323)
.++|.+++ .+.+.+. ++.+. +++|-|... ...|.++|+++++.+.|+.++. .+.+++ .+|++.
T Consensus 8 ~~~v~~l~-~~~f~~~~~v~~~~~---~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 8 RSPVLDFY-KGQLDYAEELRTDAE---VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred CCCeEEec-hhhhHHHHhcccCCC---EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 35688885 5777765 34555 467777542 2478999999987777777643 245677 589998
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
+.|++++|+++ +....|.|..+.+.|..|+
T Consensus 84 ~~PTl~lf~~g-~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 84 YFPVIHLYYRS-RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ccCEEEEEECC-ccceEEeCCCCHHHHHhhC
Confidence 99999999864 3456788999999999984
No 42
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.64 E-value=0.00093 Score=51.37 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
|.+..+ +.++++..+.+.. +++|-|... ...|.++|+++.+.+.|+.++. -.++++.++++...|++
T Consensus 1 ~~~~~l-~~~~f~~~v~~~~---~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 1 PEIVTL-DRGDFDAAVNSGE---IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred CCeEEc-CHhhHHHHhcCCC---eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 346677 4678888886654 567777542 2578899999987777766642 25678889999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHH
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
++|+++ .....|.|..+.+.|.+|.
T Consensus 77 ~~~~~g-~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 77 YVFPSG-MNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEEcCC-CCcccCCCCCCHHHHHhhC
Confidence 999864 3344678999999999883
No 43
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.62 E-value=0.00099 Score=52.81 Aligned_cols=99 Identities=8% Similarity=0.071 Sum_probs=72.2
Q ss_pred CCeeecChhhHHHh---hcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHh-hhcCCcCCCC
Q 020623 129 PLSVPINQDTLNLL---KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA-DTFEANKKSK 203 (323)
Q Consensus 129 Plv~~~t~~~~~~~---~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~-~~~gl~~~~~ 203 (323)
+-|.+++.+|+..+ ...++++++.|... --..-+.+...+.++|+++++ +.|+-+|++.....+ +.+++ ..
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~-WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I---~~ 84 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAP-WDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF---FY 84 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC---cc
Confidence 46889999999876 34556666767653 223457788899999999998 999999999877777 58898 57
Q ss_pred CCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 204 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 204 ~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.|.+.++...+ ...+ .+..+.+.|..|+
T Consensus 85 ~PTl~lf~~g~~~~~y-------~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRGPIEY-------KGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCccceEE-------eCCCCHHHHHhhC
Confidence 99999886432 1112 2346778887763
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.62 E-value=0.00087 Score=50.46 Aligned_cols=96 Identities=10% Similarity=0.206 Sum_probs=70.1
Q ss_pred ecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhC--CC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 133 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 133 ~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~--~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+++..++......++++++.|... .-..-..+...++++|+.+ ++ +.|+.+|.+....+.+.||+ ...|.+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAP-WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV---RGYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECC-CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC---CCCCEEEE
Confidence 467778888777777777777763 2234567778899999888 45 99999999877788899999 57899999
Q ss_pred EeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 210 WDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 210 ~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
++.++ ..... .+..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~------~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKY------EGPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccC------CCCcCHHHHHhhC
Confidence 98763 22221 2345778887774
No 45
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.61 E-value=0.00089 Score=52.82 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=72.6
Q ss_pred CCCeeecChhhHHHhhcCC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 128 LPLSVPINQDTLNLLKDDK---RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 128 ~Plv~~~t~~~~~~~~~~~---~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
...+.+++.+++....... .++++.|.... -..-..+...|+++|++++++.|+.+|.+.. .+++.|++ ..+
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~-c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i---~~~ 77 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPG-FPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDI---KVL 77 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCC-CCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCC---CcC
Confidence 3456778888887654332 67777777632 2334677789999999998899999999876 78888999 589
Q ss_pred CeEEEEeCCcceeeccCCCCC-CCCCCHHHHHHHH
Q 020623 205 PKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFL 238 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~-~~~~t~~~I~~Fi 238 (323)
|.++++...+......|..++ ...++.+.|.+|+
T Consensus 78 Pt~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 78 PTLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred CEEEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 999988764322111232221 2457778887765
No 46
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.57 E-value=0.00095 Score=52.02 Aligned_cols=92 Identities=22% Similarity=0.355 Sum_probs=66.0
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC------ceeEEeec-ccchhhHhhcCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK------KAWFAVAK-DFSEDTMVLYDFD 92 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~------~~~F~~~~-~~~~~~~~~~~~~ 92 (323)
.|.++ +.+.+++.++.++ +++|-|... ...|.++|..++. .+.|+..+ +...+++.++++.
T Consensus 2 ~v~~l-~~~~f~~~i~~~~---~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~ 77 (108)
T cd02996 2 EIVSL-TSGNIDDILQSAE---LVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN 77 (108)
T ss_pred ceEEc-CHhhHHHHHhcCC---EEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC
Confidence 35677 4688998887766 467776542 2467788877632 35666553 2356888999999
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
+.|++++|+++......|.|+.+.++|.+||
T Consensus 78 ~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 78 KYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred cCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999987432345688998999999996
No 47
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.57 E-value=0.00092 Score=51.20 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=65.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC--ceeEEeecccchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK--KAWFAVAKDFSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~--~~~F~~~~~~~~~~~~~~~~~~~p~i 97 (323)
||..|+ .+.+++.+.+.+. +++|-|... ...+.++|..+.+ .+.|+..+....+++..+++.+.|++
T Consensus 1 ~v~~l~-~~~f~~~i~~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~ 77 (104)
T cd02995 1 PVKVVV-GKNFDEVVLDSDK--DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTI 77 (104)
T ss_pred CeEEEc-hhhhHHHHhCCCC--cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEE
Confidence 467774 5788887776543 466666432 2477888988865 46676665434456667777789999
Q ss_pred EEecCCC-CCCccccCCCCHHHHHHHH
Q 020623 98 VALQPSY-NEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 98 vv~k~~~-~~~~~y~g~~~~~~L~~fI 123 (323)
++|+++. .....|.|..+.+.|.+||
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9998753 2345688999999999996
No 48
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.55 E-value=0.00089 Score=53.65 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=69.4
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC------------hhHHHHHHHhh--cCceeEEeecc-cchhhHhhcCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD------------ESVMSNLALKY--KKKAWFAVAKD-FSEDTMVLYDFD 92 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~------------~~~f~~~A~~~--~~~~~F~~~~~-~~~~~~~~~~~~ 92 (323)
.|..|+ .+++++.+.+++. ++++.|... .+.+.++|.++ .+.+.|+.++. -+.+++.+|++.
T Consensus 10 ~v~~lt-~~nF~~~v~~~~~--~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 10 RVIDLN-EKNYKQVLKKYDV--LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred ceeeCC-hhhHHHHHHhCCc--eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 467774 6999998988885 567777431 12345677776 55677776643 367899999999
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+.|++++|+++ +...|.|..+.+.|.+||.+
T Consensus 87 ~iPTl~lfk~G--~~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 87 EEDSIYVFKDD--EVIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cccEEEEEECC--EEEEeeCCCCHHHHHHHHHH
Confidence 99999999974 33348899999999999975
No 49
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.53 E-value=0.0018 Score=50.25 Aligned_cols=102 Identities=10% Similarity=0.154 Sum_probs=72.2
Q ss_pred eeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc--hhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~--~~~~~~~~gl~~~~~~P~ 206 (323)
+.+++.+++.... ..++++++.|... .=..-+++...+.++|+.+++ +.|+.+|++. ...+++.|++ ...|.
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~-wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i---~~~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAP-WCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV---QGFPT 77 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECC-CCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC---CcCCE
Confidence 5688999998865 4456777777653 223345677789999999987 8899999886 6678888999 57899
Q ss_pred EEEEeCCcc-eeeccCCCCCCCCCCHHHHHHHH
Q 020623 207 MVVWDGNEN-YLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 207 ivI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
+++++..++ ..... ....+..+.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAV--EDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCccccccc--ccccCccCHHHHHHHh
Confidence 999987541 00000 0113457888999987
No 50
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.50 E-value=0.0012 Score=52.94 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=70.6
Q ss_pred CeeecChhhHHHhh-cCCCcEEEEEEeCCC-hhHHH--HHHHHHHHHHHhC--CC-eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 130 LSVPINQDTLNLLK-DDKRKIVLAIVEDET-EEKSQ--KLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 130 lv~~~t~~~~~~~~-~~~~~~v~~f~~~~~-~e~~~--~~~~~l~~~A~~~--~~-l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
-+..+|.+||.... .++.++++.|...-- ++.-+ .+...+.++|.++ .+ +.|+.+|+++.+.+++.||+ .
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I---~ 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL---D 86 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC---c
Confidence 46677888888654 444566555543210 11122 3335667778876 55 99999999999999999999 5
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.+|.++++...+.-. . .+..+.+.|.+||++..
T Consensus 87 ~iPTl~lfk~G~~v~-~------~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDDEVIE-Y------DGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECCEEEE-e------eCCCCHHHHHHHHHHHh
Confidence 899999987543222 2 23468899999999875
No 51
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.47 E-value=0.0016 Score=49.84 Aligned_cols=98 Identities=12% Similarity=0.251 Sum_probs=70.5
Q ss_pred eeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--C-eEEEEEcCcc-hhhHhhhcCCcCCCCCC
Q 020623 131 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ-FADFADTFEANKKSKLP 205 (323)
Q Consensus 131 v~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~-l~F~~vd~~~-~~~~~~~~gl~~~~~~P 205 (323)
+.+++.+++...... ++++++.|... .-..-.++...+.++++.++ + +.|+.+|... .+.+++.|++ ...|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i---~~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAP-WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV---SGFP 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECC-CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC---CCcC
Confidence 457788888877654 45777777653 22334566788899998876 3 9999999988 7888999999 5789
Q ss_pred eEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 206 KMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 206 ~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.+++.+..+ +.... .+..+.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~------~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKY------EGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCcccc------CCccCHHHHHhhC
Confidence 999988653 21111 3457888998885
No 52
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.47 E-value=0.0021 Score=57.22 Aligned_cols=106 Identities=12% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCeeecChhhHHHhhcC-----CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCC
Q 020623 129 PLSVPINQDTLNLLKDD-----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~-----~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
..+.++|..|+..+... ++++++.|... .-..-+.+...+.++|+++++ +.|+.+|.+..+.+++.|++ .
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyAp-WC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I---~ 105 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAP-WCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI---K 105 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECC-CChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC---C
Confidence 35788899999886532 35777777653 223346677889999999998 99999999988888999999 5
Q ss_pred CCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 203 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
..|.+++++....+.+. .+..+.++|.+|+..-...
T Consensus 106 ~~PTl~~f~~G~~v~~~------~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 106 GYPTLLLFDKGKMYQYE------GGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred cCCEEEEEECCEEEEee------CCCCCHHHHHHHHHHHHHh
Confidence 89999998854333332 2457889999999887643
No 53
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.002 Score=53.15 Aligned_cols=106 Identities=11% Similarity=0.169 Sum_probs=79.1
Q ss_pred CCCeeecChhhHHH-hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCC
Q 020623 128 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP 205 (323)
Q Consensus 128 ~Plv~~~t~~~~~~-~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P 205 (323)
.+.+...+.+.+.. +.++++|+++-|... -=..=+.+...|.+++.++.| +.|+.+|.+++.++++.|+| ..+|
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~-WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I---~avP 117 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAE-WCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI---SAVP 117 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecC-cCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce---eeee
Confidence 34666666666654 567889998877652 001235677899999999998 99999999999999999999 6899
Q ss_pred eEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 206 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 206 ~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.++++...++--. +-+..+.+.|.+||++|+.
T Consensus 118 tvlvfknGe~~d~------~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDR------FVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeee------ecccCCHHHHHHHHHHHhc
Confidence 9999887543211 1245788999999999874
No 54
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.41 E-value=0.0033 Score=47.56 Aligned_cols=97 Identities=6% Similarity=0.153 Sum_probs=66.7
Q ss_pred ChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+.+++...... ++++++.|... .-..-..+...|+++++++++ +.|+.+|.+....+++.||+ ...|.++++..
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAP-WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI---RSIPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECC-CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CcCCEEEEEeC
Confidence 45566654433 45777777653 222345666788999988886 99999999877778889999 57999999865
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
.+..... .+..+.+.|.+|++..
T Consensus 78 g~~~~~~------~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 GKEVDRS------VGALPKAALKQLINKN 100 (101)
T ss_pred CcEeeee------cCCCCHHHHHHHHHhh
Confidence 4322121 1235678899998763
No 55
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.40 E-value=0.0024 Score=48.62 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=64.3
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC--ceeEEeecc-cchhhHhhcCCCCCCeEEEecC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK--KAWFAVAKD-FSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~--~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
+.+.+++++..+. +++|-|... ...+.++|..+.. .+.|+..+. ...+++.++++...|++++|++
T Consensus 2 ~~~~~~~~~~~~~---~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 2 TASNFDDIVLSNK---DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred chhhHHHHhccCC---cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecC
Confidence 3567788777544 467777542 2467788888876 466665532 3567788899999999999987
Q ss_pred CCCCCccccCCCCHHHHHHHHHhh
Q 020623 103 SYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 103 ~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+ +....|.|..+.+.|..||.++
T Consensus 79 ~-~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 79 G-KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred C-CcceeecCCCCHHHHHHHHHhc
Confidence 4 3355688999999999999875
No 56
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.33 E-value=0.0028 Score=49.97 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=63.5
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCC-ChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~-~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
..++|..|+......+.+.++.|...- .-..-..+...|.++|++|.+ +.|+.+|.++.+.++..|++ ...|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V---~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV---LRTPALL 88 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC---CcCCEEE
Confidence 456777888887777778877776521 112345677899999999998 99999999998889999999 5799999
Q ss_pred EEeCCc
Q 020623 209 VWDGNE 214 (323)
Q Consensus 209 I~~~~~ 214 (323)
++...+
T Consensus 89 ~fkdGk 94 (111)
T cd02965 89 FFRDGR 94 (111)
T ss_pred EEECCE
Confidence 887543
No 57
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.33 E-value=0.0035 Score=47.93 Aligned_cols=97 Identities=10% Similarity=0.219 Sum_probs=68.7
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--C-eEEEEEcCcc--hhhHhhhcCCcCCCCCC
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ--FADFADTFEANKKSKLP 205 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~-l~F~~vd~~~--~~~~~~~~gl~~~~~~P 205 (323)
+.+++..++......++++++.|...- -..-.++...+.++++.++ + +.|+.+|... ...++..+|+ ...|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i---~~~P 77 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPW-CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV---KGFP 77 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCC-CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC---cccc
Confidence 567788888887777778877777631 2334566677888888776 4 8898899986 7778888999 5789
Q ss_pred eEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 206 KMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 206 ~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.+++....+ .+.+ .+..+.+++.+|+
T Consensus 78 t~~~~~~g~~~~~~-------~g~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENGKFVEKY-------EGERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCCCeeEEe-------CCCCCHHHHHhhC
Confidence 998877543 2222 2346778887774
No 58
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.32 E-value=0.0022 Score=50.88 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=65.8
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEec------CChhHHHHHH-Hhh--cCceeEEee--cc----cchhhHhhcCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFG------LDESVMSNLA-LKY--KKKAWFAVA--KD----FSEDTMVLYDFD 92 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~------~~~~~f~~~A-~~~--~~~~~F~~~--~~----~~~~~~~~~~~~ 92 (323)
.+..|+ .-.+++++..... ++|=|. +..+.|.++| +.. .++..++.+ ++ .+.+++.+|+++
T Consensus 5 G~v~LD-~~tFdKvi~kf~~---~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 5 GCVPLD-ELTFDKVIPKFKY---VLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp TSEEES-TTHHHHHGGGSSE---EEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred ceeecc-ceehhheeccCce---EEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 455674 4678888988773 667662 2357899999 333 345666655 33 267889999986
Q ss_pred C--CCeEEEecCCCCCCccc--cCCCCHHHHHHHHHhhc
Q 020623 93 K--VPALVALQPSYNEHNIF--YGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 93 ~--~p~ivv~k~~~~~~~~y--~g~~~~~~L~~fI~~~~ 127 (323)
+ .|.+.+|+...++...| +|+++.++|.+|++.|+
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 4 69999999655666667 78999999999999985
No 59
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.29 E-value=0.0068 Score=46.37 Aligned_cols=96 Identities=13% Similarity=0.180 Sum_probs=68.3
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
|.+++.+++..+... . .++.|... --..-+.+...+.++|+.+++ +.|+.+|.+..+.+++.+++ ..+|.++
T Consensus 3 v~~l~~~~f~~~~~~-~-~lv~f~a~-wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLVLEG-E-WMIEFYAP-WCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV---TALPTIY 76 (101)
T ss_pred eEEcChhhHHHHhCC-C-EEEEEECC-CCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC---cccCEEE
Confidence 678899999987753 3 44545542 123345677788888888764 99999999887788888998 6899998
Q ss_pred EEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 209 VWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 209 I~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
+.. +++.... .+..+.++|.+|++
T Consensus 77 ~~~-~g~~~~~------~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAK-DGVFRRY------QGPRDKEDLISFIE 100 (101)
T ss_pred EeC-CCCEEEe------cCCCCHHHHHHHHh
Confidence 864 4433222 23568899999986
No 60
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.28 E-value=0.0038 Score=47.62 Aligned_cols=96 Identities=10% Similarity=0.187 Sum_probs=67.4
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC----eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~----l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
+.+++.+++......+ ++++.|... .-..-+.+...+.++|+++++ +.|+.+|.+....+++.|++ ..+|.
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAP-WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV---RGYPT 76 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECC-CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC---CcCCE
Confidence 5678889998877554 566666553 122345666788888888753 89999999877788889998 57999
Q ss_pred EEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 207 MVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 207 ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
++++...+ ...+ .+..+.+.|.+||
T Consensus 77 ~~~~~~g~~~~~~-------~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKY-------KGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEe-------eCCCCHHHHHhhC
Confidence 99886443 2222 2346778888875
No 61
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.24 E-value=0.0043 Score=46.57 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=63.5
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhh--cCceeEEeecc-cchhhHhhcCCCCCCeEEEecC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKY--KKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~--~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
+.+++.+.+++.. +++|-|... ...+.++|..+ .+.+.|+..+. ....++.++++...|++++|++
T Consensus 4 ~~~~~~~~i~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 4 TDDNFDELVKDSK---DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cHHHHHHHHhCCC---cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 4578888888876 356666542 24677888888 46677776642 2467888999988999999987
Q ss_pred CCCCCccccCCCCHHHHHHHH
Q 020623 103 SYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 103 ~~~~~~~y~g~~~~~~L~~fI 123 (323)
.......|.|..+.++|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 433455678888899999885
No 62
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.23 E-value=0.006 Score=46.18 Aligned_cols=84 Identities=15% Similarity=0.257 Sum_probs=61.0
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSES 224 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~ 224 (323)
++++++.|... .-..-+.+...+.++++.+++ +.|+.+|.+..+.+++.|++ ..+|.+++++..+.....
T Consensus 12 ~~~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i---~~~Pt~~~~~~g~~~~~~----- 82 (96)
T cd02956 12 QVPVVVDFWAP-RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV---QALPTVYLFAAGQPVDGF----- 82 (96)
T ss_pred CCeEEEEEECC-CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC---CCCCEEEEEeCCEEeeee-----
Confidence 56777777653 222345677889999999987 99999999988888899999 579999998743222111
Q ss_pred CCCCCCHHHHHHHHH
Q 020623 225 IDEEDQGSQISRFLE 239 (323)
Q Consensus 225 ~~~~~t~~~I~~Fi~ 239 (323)
.+..+.+.|.+|++
T Consensus 83 -~g~~~~~~l~~~l~ 96 (96)
T cd02956 83 -QGAQPEEQLRQMLD 96 (96)
T ss_pred -cCCCCHHHHHHHhC
Confidence 23467888888874
No 63
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.22 E-value=0.0058 Score=47.74 Aligned_cols=98 Identities=10% Similarity=0.161 Sum_probs=68.6
Q ss_pred eeecChhhHHHhhc---CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcc-hhhHhh-hcCCcCCCC
Q 020623 131 SVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-FADFAD-TFEANKKSK 203 (323)
Q Consensus 131 v~~~t~~~~~~~~~---~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~-~~~~~~-~~gl~~~~~ 203 (323)
|.+++.+++..+.. .++++++.|... .=..-+++...+.++|+.+++ +.|+.+|.+. ...++. .+++ ..
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v---~~ 78 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAP-WCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL---KS 78 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECC-CCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC---Cc
Confidence 67889999988763 457887777653 223346677788999998875 8999999875 345554 5888 57
Q ss_pred CCeEEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 204 LPKMVVWDGNE--NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 204 ~P~ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.|.+++.+.++ .+.+. | +.-+.++|..||
T Consensus 79 ~Pti~~f~~~~~~~~~y~-g-----~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYP-S-----EQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceecc-C-----CCCCHHHHHhhC
Confidence 99999887653 23332 1 125778888875
No 64
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.22 E-value=0.0083 Score=49.45 Aligned_cols=103 Identities=10% Similarity=0.143 Sum_probs=72.4
Q ss_pred hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCc--chhhHhhhcCCcCCCCCCeEEEEeCCc
Q 020623 138 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 138 ~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~--~~~~~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
.+......++++++.|... .=..-..+...|.++++++++ +.|+.++.+ .+...+..|++ ...|.+++++.++
T Consensus 12 ~~~~a~~~gk~vvV~F~A~-WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V---~~iPt~v~~~~~G 87 (142)
T cd02950 12 PPEVALSNGKPTLVEFYAD-WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV---DGIPHFVFLDREG 87 (142)
T ss_pred CHHHHHhCCCEEEEEEECC-cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC---CCCCEEEEECCCC
Confidence 3444455678888777652 113345677889999999876 788887765 34567888999 5799999998765
Q ss_pred cee-eccCCCCCCCCCCHHHHHHHHHHHHcCcccccc
Q 020623 215 NYL-TVIGSESIDEEDQGSQISRFLEGYREGRTEQKK 250 (323)
Q Consensus 215 kY~-~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~ 250 (323)
+-. .. .+..+.+.|.++++.+++|.-.|..
T Consensus 88 ~~v~~~------~G~~~~~~l~~~l~~l~~~~~~~~~ 118 (142)
T cd02950 88 NEEGQS------IGLQPKQVLAQNLDALVAGEPLPYA 118 (142)
T ss_pred CEEEEE------eCCCCHHHHHHHHHHHHcCCCCCcc
Confidence 321 11 2346788999999999998865543
No 65
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.20 E-value=0.004 Score=47.60 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=64.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhc--CceeEEeecc-c-chhhHhhcCCCCCCe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYK--KKAWFAVAKD-F-SEDTMVLYDFDKVPA 96 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~--~~~~F~~~~~-~-~~~~~~~~~~~~~p~ 96 (323)
+..++ .++++..+.+.+. +++|-|... .+.|.+++.++. +.+.|+..+. . ..+++.++++.+.|+
T Consensus 2 ~~~l~-~~~~~~~~~~~~~--~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~ 78 (105)
T cd02998 2 VVELT-DSNFDKVVGDDKK--DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPT 78 (105)
T ss_pred eEEcc-hhcHHHHhcCCCC--cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCE
Confidence 35564 4778887766553 456666432 247788888876 3466655532 3 467888999989999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
+++|+++......|.|..+.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999987433455688999999999996
No 66
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.005 Score=56.28 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCeeecChhhHHHh-h-cCC-CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 129 PLSVPINQDTLNLL-K-DDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 129 Plv~~~t~~~~~~~-~-~~~-~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
|.+..+|..||..- . .+. .|+++.|... --....++...|.+++..|+| +.++.+|++..+.+...||+ ..+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap-~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi---qsI 98 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAP-WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV---QSI 98 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCC-CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc---CcC
Confidence 34888999999863 2 333 5998888764 234568899999999999999 99999999998999999999 689
Q ss_pred CeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC
Q 020623 205 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 244 (323)
Q Consensus 205 P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G 244 (323)
|.++.+.... +..|. .+....+.|.+|++.+..-
T Consensus 99 PtV~af~dGq---pVdgF---~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQ---PVDGF---QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCc---Ccccc---CCCCcHHHHHHHHHHhcCh
Confidence 9998765321 11121 2335678999999999765
No 67
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0032 Score=51.90 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=72.6
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEe
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~ 100 (323)
..+.|.+++++.+.+.+. |++|-|... .+...+++..|.+.+.|+.++ +...+++..|++...|++++|
T Consensus 45 ~~~~s~~~~~~~Vi~S~~--PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINSDV--PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccCHHHHHHHHHccCC--CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 345578999887777776 899998642 356788999998888888773 356788999999999999999
Q ss_pred cCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 101 QPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 101 k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+++ +....+-|-.+.+.|.+||.+.
T Consensus 123 knG-e~~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 123 KNG-EKVDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred ECC-EEeeeecccCCHHHHHHHHHHH
Confidence 984 3344566777888899998764
No 68
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.13 E-value=0.0082 Score=45.81 Aligned_cols=97 Identities=9% Similarity=0.215 Sum_probs=68.4
Q ss_pred eeecChhhHHHhh-cCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC---eEEEEEcCcchhhHhhhcCCcCCCCCCe
Q 020623 131 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPK 206 (323)
Q Consensus 131 v~~~t~~~~~~~~-~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~---l~F~~vd~~~~~~~~~~~gl~~~~~~P~ 206 (323)
|.+++..++.... ..++++++.|... .-..-+.+...+.++|+.+++ +.|+.+|.+.. .....+++ ...|.
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~---~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAP-WCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV---DGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECC-CCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC---CCCCE
Confidence 6688999998764 4456777767653 223456788899999998764 89999999764 45666777 57899
Q ss_pred EEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 207 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 207 ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
+++...++ +-... .+..+..+|.+||
T Consensus 77 ~~~~~~~~~~~~~~~------~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKY------EGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEc------cCCcCHHHHHhhC
Confidence 99887643 21111 3457888888885
No 69
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.11 E-value=0.0071 Score=47.24 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=63.1
Q ss_pred CceecCChHHHHHHHHh--cCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecc-c-chhhHh-hcCCCC
Q 020623 28 DVSILNSDAEVSDFVEN--AGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKD-F-SEDTMV-LYDFDK 93 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~--~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~-~-~~~~~~-~~~~~~ 93 (323)
.|.++ |.++++.++.. .+. +++|-|... ...|.++|..+++. +.|+..+. . ...++. .+++..
T Consensus 2 ~v~~~-~~~~~~~~~~~~~~~k--~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~ 78 (109)
T cd02993 2 AVVTL-SRAEIEALAKGERRNQ--STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS 78 (109)
T ss_pred cceec-cHHHHHHHHhhhhcCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc
Confidence 36677 45788887742 232 577777542 24788899888764 66665532 1 234554 588888
Q ss_pred CCeEEEecCCCCCCccccCC-CCHHHHHHHH
Q 020623 94 VPALVALQPSYNEHNIFYGP-FDEEFLEEFI 123 (323)
Q Consensus 94 ~p~ivv~k~~~~~~~~y~g~-~~~~~L~~fI 123 (323)
.|++++|++.......|.|+ .+.++|.+||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999998743345578885 7899999996
No 70
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.08 E-value=0.0066 Score=47.72 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=62.1
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGS 222 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~ 222 (323)
.++|+++.|... .-..-+.+...+.++++++++ +.|+.+|.+..+.+++.+|+ ...|.+++.+..+.....
T Consensus 23 ~~~~vlV~F~a~-wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~i~~~g~~~~~~--- 95 (111)
T cd02963 23 FKKPYLIKITSD-WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA---HSVPAIVGIINGQVTFYH--- 95 (111)
T ss_pred CCCeEEEEEECC-ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC---ccCCEEEEEECCEEEEEe---
Confidence 457787777753 123345666788899998874 89999999877788889999 589999988744322222
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 020623 223 ESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 223 ~~~~~~~t~~~I~~Fi~~ 240 (323)
.+..+.+.|.+||++
T Consensus 96 ---~G~~~~~~l~~~i~~ 110 (111)
T cd02963 96 ---DSSFTKQHVVDFVRK 110 (111)
T ss_pred ---cCCCCHHHHHHHHhc
Confidence 245678899999875
No 71
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.04 E-value=0.01 Score=50.75 Aligned_cols=110 Identities=18% Similarity=0.287 Sum_probs=74.3
Q ss_pred cCCCeeecCh-hhHHHhhcC-C--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCC
Q 020623 127 FLPLSVPINQ-DTLNLLKDD-K--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 127 ~~Plv~~~t~-~~~~~~~~~-~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
.+.-+.+++. ++|...... + .++++.|+.. .-..-+.+...|.++|++|+++.|+.+|++.. .++..|++ .
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~-wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v---~ 134 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEP-GIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT---D 134 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECC-CCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC---C
Confidence 3566778887 777765432 2 3666666653 22334566689999999998899999999865 67788888 5
Q ss_pred CCCeEEEEeCCcceeeccCCCC-CCCCCCHHHHHHHHHHH
Q 020623 203 KLPKMVVWDGNENYLTVIGSES-IDEEDQGSQISRFLEGY 241 (323)
Q Consensus 203 ~~P~ivI~~~~~kY~~~~~~~~-~~~~~t~~~I~~Fi~~~ 241 (323)
.+|+++++..........|... +..+++.+.|..|+..+
T Consensus 135 ~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 135 ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 7999998875432111112111 23478999999998753
No 72
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.04 E-value=0.0025 Score=48.30 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=51.1
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--h---hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--~---~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+.++.+.++|+. +.... ..+||||++ + ..|+++|..++++|.|.+. +.+.+ ..... ..+.+++|++.
T Consensus 1 Ikef~~~~eL~~-id~~k---r~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~--~G~~~-~~~~~-~~~~~i~frp~ 72 (91)
T cd03070 1 IKEFRNLDELNN-VDRSK---RNIIGYFESKDSDEYDNFRKVANILRDDCSFLVG--FGDVT-KPERP-PGDNIIYFPPG 72 (91)
T ss_pred CceecCHHHHHh-hCcCC---ceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEE--ecccc-ccccC-CCCCeEEECCC
Confidence 356777778777 44333 479999864 2 3789999999999988766 22212 11111 23567888874
Q ss_pred -CCCCccccCCCC
Q 020623 104 -YNEHNIFYGPFD 115 (323)
Q Consensus 104 -~~~~~~y~g~~~ 115 (323)
.....+|.|+++
T Consensus 73 ~~~~~~~y~G~~t 85 (91)
T cd03070 73 HNAPDMVYLGSLT 85 (91)
T ss_pred CCCCceEEccCCC
Confidence 334467889874
No 73
>PRK10996 thioredoxin 2; Provisional
Probab=97.03 E-value=0.0096 Score=48.86 Aligned_cols=93 Identities=10% Similarity=0.282 Sum_probs=67.1
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv 99 (323)
+..+ +.++++.+++++. +++|-|..+ ...|.+++.++.+.+.|...+ +...+++.++++.+.|++++
T Consensus 37 ~i~~-~~~~~~~~i~~~k---~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 37 VINA-TGETLDKLLQDDL---PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CEEc-CHHHHHHHHhCCC---eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 4455 6788999887665 467776542 246888888887777665553 23567888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
|+++ +....+.|..+.+.|++||.+.
T Consensus 113 ~~~G-~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNG-QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 9752 2223456888899999999865
No 74
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.02 E-value=0.0063 Score=46.93 Aligned_cols=83 Identities=6% Similarity=0.064 Sum_probs=61.8
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCc-chhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSE 223 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~-~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~ 223 (323)
.++++++.|... --..-+.+...|.++|+.++++.|+.+|.+ .++.++..|++ ..+|.+++++......+
T Consensus 17 ~g~~vlV~F~a~-WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V---~~~PT~~lf~~g~~~~~----- 87 (100)
T cd02999 17 REDYTAVLFYAS-WCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV---VGFPTILLFNSTPRVRY----- 87 (100)
T ss_pred CCCEEEEEEECC-CCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC---eecCEEEEEcCCceeEe-----
Confidence 457777777652 123356777899999999988888999998 67888899999 57999999886522222
Q ss_pred CCCCCCCHHHHHHHH
Q 020623 224 SIDEEDQGSQISRFL 238 (323)
Q Consensus 224 ~~~~~~t~~~I~~Fi 238 (323)
.+..+.+.|.+||
T Consensus 88 --~G~~~~~~l~~f~ 100 (100)
T cd02999 88 --NGTRTLDSLAAFY 100 (100)
T ss_pred --cCCCCHHHHHhhC
Confidence 3457888898885
No 75
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.01 E-value=0.02 Score=46.59 Aligned_cols=113 Identities=10% Similarity=0.089 Sum_probs=78.2
Q ss_pred HHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCCChhH---HHHHHHHHHHHHHhCC-C-eEEEEEcCcchhhHh
Q 020623 119 LEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEK---SQKLVTTLKAAASANR-E-LVFCYVGIKQFADFA 193 (323)
Q Consensus 119 L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~---~~~~~~~l~~~A~~~~-~-l~F~~vd~~~~~~~~ 193 (323)
|.+=+..+.+|.+.. .++..+.......|+ |+.. ++.. .....-.|.++|++|+ + +.|+.+|.++.+.++
T Consensus 10 l~~rl~~~g~~~~~~---~~~~~~~~~~~~~vl-~~~g-dp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA 84 (132)
T PRK11509 10 LWQRMLARGWTPVSE---SRLDDWLTQAPDGVV-LLSS-DPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIG 84 (132)
T ss_pred HHHHHHHcCCCcccc---ccHHHHHhCCCcEEE-EeCC-CCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHH
Confidence 333333456777665 667777665544444 4442 2322 3345578999999998 4 999999999999999
Q ss_pred hhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 194 DTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 194 ~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
..||+ ...|.++++...+.-... .+-.+.+.+.+||+.+++--
T Consensus 85 ~~fgV---~siPTLl~FkdGk~v~~i------~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 85 DRFGV---FRFPATLVFTGGNYRGVL------NGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred HHcCC---ccCCEEEEEECCEEEEEE------eCcCCHHHHHHHHHHHhcCc
Confidence 99999 589999998854321111 23467799999999998753
No 76
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.99 E-value=0.011 Score=44.60 Aligned_cols=90 Identities=20% Similarity=0.387 Sum_probs=63.1
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSY 104 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~ 104 (323)
+.++++..+.+++. +++|.|... .+.|.+++.++.+++.|+..+. .+.++..++++...|++++|+.+
T Consensus 2 ~~~~~~~~~~~~~~--~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g- 78 (101)
T TIGR01068 2 TDANFDETIASSDK--PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG- 78 (101)
T ss_pred CHHHHHHHHhhcCC--cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC-
Confidence 35788887776553 466666532 2467888888876677766632 35567888999899999999742
Q ss_pred CCCccccCCCCHHHHHHHHHhh
Q 020623 105 NEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 105 ~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
.....+.|..+.+.|.+||+++
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhh
Confidence 2223456877889999999865
No 77
>PTZ00051 thioredoxin; Provisional
Probab=96.99 E-value=0.014 Score=44.27 Aligned_cols=75 Identities=9% Similarity=0.262 Sum_probs=57.4
Q ss_pred ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 135 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
+.+.+..+...++++++.|... .-..-..+...+.+++++++++.|+.+|.+....+++.|++ ...|.+++....
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g 81 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAE-WCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI---TSMPTFKVFKNG 81 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECC-CCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC---ceeeEEEEEeCC
Confidence 3456777777677777777763 22334667788999999988899999999988888999999 579999887643
No 78
>PRK09381 trxA thioredoxin; Provisional
Probab=96.95 E-value=0.013 Score=45.59 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=66.9
Q ss_pred CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 27 PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
..|+.++ .+++++.+.+.+. +++|-|+.. .+.+.+++.++.+.+.|+..+. ...+++.++++...|++
T Consensus 3 ~~v~~~~-~~~~~~~v~~~~~--~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 3 DKIIHLT-DDSFDTDVLKADG--AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CcceeeC-hhhHHHHHhcCCC--eEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 4577785 4677764443333 567777542 2477889999987776665532 34667778999899999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
++|+++ .....+.|..+.+.|+.||..+.
T Consensus 80 ~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 999742 22334678888999999998753
No 79
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.95 E-value=0.015 Score=44.00 Aligned_cols=92 Identities=13% Similarity=0.280 Sum_probs=61.4
Q ss_pred hhhHHHhhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCC-CeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 136 QDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 136 ~~~~~~~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~-~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
.+++....... +++++.|... .-..-..+...|.++++++. ++.|+.+|.+..+.+...|++ ..+|.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~-~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i---~~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAP-WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI---TAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECC-CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC---ccccEEEEEEC
Confidence 34555555443 7777777653 22334667788999999954 499999999877788889999 57999999875
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
.+.-....| .+.+.|.+.|
T Consensus 78 g~~~~~~~g-------~~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSG-------ADPKELAKKV 96 (97)
T ss_pred CEEEEEEeC-------CCHHHHHHhh
Confidence 432222122 4556666554
No 80
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.94 E-value=0.0089 Score=45.55 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=63.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeecc-cchhhHhhcCCCCCCe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAKD-FSEDTMVLYDFDKVPA 96 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~~-~~~~~~~~~~~~~~p~ 96 (323)
+..+ +.+++++.+.+.. ++|-|... .+.|.++|.++.+ .+.|+.++. ...+++.++++...|+
T Consensus 2 ~~~l-~~~~f~~~~~~~~----~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 2 VLEL-TEDNFDHHIAEGN----HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT 76 (102)
T ss_pred eeEC-CHHHHHHHhhcCC----EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence 4567 4578988886553 56666432 2478889998875 566665542 2456788899988999
Q ss_pred EEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 97 LVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 97 ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
+++|+++ .....|.|..+.++|.+||
T Consensus 77 ~~~~~~g-~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDG-EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCC-CeeeEeeCCCCHHHHHhhC
Confidence 9999763 2344688999999999986
No 81
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.94 E-value=0.009 Score=45.75 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=70.2
Q ss_pred CeeecC-hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc--hhhHhhhcCCcCCCCCC
Q 020623 130 LSVPIN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLP 205 (323)
Q Consensus 130 lv~~~t-~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~--~~~~~~~~gl~~~~~~P 205 (323)
++..++ ...|.+++.....++++|+. +..+..+.++.|+++|..-+| =+.+|+|+.+ -..++..+-+ ++...|
T Consensus 2 ~ie~i~d~KdfKKLLRTr~NVLvLy~k--s~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp 78 (112)
T cd03067 2 LIEDISDHKDFKKLLRTRNNVLVLYSK--SAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKP 78 (112)
T ss_pred ccccccchHHHHHHHhhcCcEEEEEec--chhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCC
Confidence 344444 34677777777788888876 445566778999999999998 7888999975 3468888888 433334
Q ss_pred eEEE--EeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 206 KMVV--WDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 206 ~ivI--~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.=.+ +-.++.|...- +..+|..++..|++|
T Consensus 79 ~~~~LkHYKdG~fHkdY-----dR~~t~kSmv~FlrD 110 (112)
T cd03067 79 KPVELKHYKDGDFHTEY-----NRQLTFKSMVAFLRD 110 (112)
T ss_pred CcchhhcccCCCccccc-----cchhhHHHHHHHhhC
Confidence 3332 33356554321 346899999999875
No 82
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.93 E-value=0.0068 Score=46.39 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=55.6
Q ss_pred cEEEEecC-C-------hhHHHHHHHhhcCceeEEeeccc-chhhHhhcCCC--CCCeEEEecCCCCCCcccc-CCCCHH
Q 020623 50 PLFIGFGL-D-------ESVMSNLALKYKKKAWFAVAKDF-SEDTMVLYDFD--KVPALVALQPSYNEHNIFY-GPFDEE 117 (323)
Q Consensus 50 ~~vVgf~~-~-------~~~f~~~A~~~~~~~~F~~~~~~-~~~~~~~~~~~--~~p~ivv~k~~~~~~~~y~-g~~~~~ 117 (323)
++++.|.. + .+.++++|+++++.+.|+.++.. .++++..+++. +.|++++++...+....+. |.++.+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~ 93 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAE 93 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHH
Confidence 46666643 2 13678999999988888877432 34578889998 8999999987423444454 445899
Q ss_pred HHHHHHHhh
Q 020623 118 FLEEFIKQN 126 (323)
Q Consensus 118 ~L~~fI~~~ 126 (323)
.|.+||.+.
T Consensus 94 ~l~~fi~~~ 102 (103)
T cd02982 94 SLEEFVEDF 102 (103)
T ss_pred HHHHHHHhh
Confidence 999999763
No 83
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.93 E-value=0.015 Score=42.49 Aligned_cols=89 Identities=15% Similarity=0.297 Sum_probs=60.8
Q ss_pred HHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc-cee
Q 020623 139 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYL 217 (323)
Q Consensus 139 ~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~-kY~ 217 (323)
+......++++++.|.... -..-..+...++++++.++++.|+++|....+.++..|++ ...|.+++....+ ...
T Consensus 3 ~~~~~~~~~~~ll~~~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v---~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPW-CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV---RSIPTFLFFKNGKEVDR 78 (93)
T ss_pred hHHHHhcCCcEEEEEECCC-ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc---ccccEEEEEECCEEEEE
Confidence 4444444477777776532 2234566778888888855699999999877778889999 5789999887654 222
Q ss_pred eccCCCCCCCCCCHHHHHHHH
Q 020623 218 TVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 218 ~~~~~~~~~~~~t~~~I~~Fi 238 (323)
+. | ..+.+.|..||
T Consensus 79 ~~-g------~~~~~~l~~~i 92 (93)
T cd02947 79 VV-G------ADPKEELEEFL 92 (93)
T ss_pred Ee-c------CCCHHHHHHHh
Confidence 21 2 24567888776
No 84
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.92 E-value=0.019 Score=44.25 Aligned_cols=94 Identities=14% Similarity=0.206 Sum_probs=66.6
Q ss_pred ChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
|.+++..+...++|+++.|... --..-+.+...|.+++..+++ +.|+.+|.+ ....++.|++ ...|.+++...
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~-wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v---~~~Pt~~~~~~ 80 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQE-WCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG---KCEPTFLFYKN 80 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECC-cCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC---CcCcEEEEEEC
Confidence 5667777777778887777653 223446677789999999874 889999988 5577889999 57899988875
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.+.-....| .+...|.++|+.
T Consensus 81 g~~~~~~~G-------~~~~~~~~~i~~ 101 (102)
T cd02948 81 GELVAVIRG-------ANAPLLNKTITE 101 (102)
T ss_pred CEEEEEEec-------CChHHHHHHHhh
Confidence 432222212 466788888764
No 85
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.84 E-value=0.026 Score=49.01 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=74.7
Q ss_pred hhcCCCeeecChhhHHH-hhcCC--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCC
Q 020623 125 QNFLPLSVPINQDTLNL-LKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKK 201 (323)
Q Consensus 125 ~~~~Plv~~~t~~~~~~-~~~~~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~ 201 (323)
...+..|.+++.+++.. +...+ .++++.|+.. .-..-+.+...|.++|++|+++.|+.++++. ....|++
T Consensus 78 ~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~-wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i--- 150 (192)
T cd02988 78 KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKD-GIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPD--- 150 (192)
T ss_pred hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECC-CCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCC---
Confidence 34577888889888875 44333 3666666653 2234466778999999999889999999864 3567888
Q ss_pred CCCCeEEEEeCCcceeeccCCCCC-CCCCCHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNENYLTVIGSESI-DEEDQGSQISRFLEG 240 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~~~~~~~~~-~~~~t~~~I~~Fi~~ 240 (323)
..+|+++++..........|...+ ...++.+.|..++.+
T Consensus 151 ~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 151 KNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 589999998764321111233333 237899999988865
No 86
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.84 E-value=0.024 Score=44.74 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=64.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
.+..|++.+++++.+.++. +++|-|+.+ ...+.++|.++.+ +.|...+ +...+++.++++...|+++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~---~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSE---RVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHHhCCC---cEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 4678888899999888776 467766542 2477888988764 5565543 2356788899999999999
Q ss_pred EecCCCCC-C----cccc--CCCCHHHHHHHH
Q 020623 99 ALQPSYNE-H----NIFY--GPFDEEFLEEFI 123 (323)
Q Consensus 99 v~k~~~~~-~----~~y~--g~~~~~~L~~fI 123 (323)
+|+++..- + ..+. ++++.++|++|+
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99975321 1 1122 467889999997
No 87
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.83 E-value=0.0051 Score=47.47 Aligned_cols=71 Identities=10% Similarity=0.153 Sum_probs=52.8
Q ss_pred cEEEEecCC--------hhHHHHHHHhhcCceeEEeecc--cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHH
Q 020623 50 PLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD--FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFL 119 (323)
Q Consensus 50 ~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~--~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L 119 (323)
+++|-|... ...|.++|+.+.+ ..|...+. ...+++.++++...|++++|+++ ....|.|..+.+.|
T Consensus 20 ~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~~~l 96 (100)
T cd02999 20 YTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTLDSL 96 (100)
T ss_pred EEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCHHHH
Confidence 577877542 2478899998874 44443332 24678889999999999999874 45568899999999
Q ss_pred HHHH
Q 020623 120 EEFI 123 (323)
Q Consensus 120 ~~fI 123 (323)
.+||
T Consensus 97 ~~f~ 100 (100)
T cd02999 97 AAFY 100 (100)
T ss_pred HhhC
Confidence 9996
No 88
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.81 E-value=0.019 Score=43.68 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=60.4
Q ss_pred hhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeecc
Q 020623 142 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVI 220 (323)
Q Consensus 142 ~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~ 220 (323)
+...++++++.|... .-..-..+...++++++++++ +.|..+|.+..+.+++.+++ ...|.+++++..+.-...
T Consensus 9 ~~~~~~~vlv~f~a~-~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v---~~vPt~~i~~~g~~v~~~- 83 (97)
T cd02949 9 YHESDRLILVLYTSP-TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI---MGTPTVQFFKDKELVKEI- 83 (97)
T ss_pred HHhCCCeEEEEEECC-CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---eeccEEEEEECCeEEEEE-
Confidence 334556666666642 122335666788899999887 99999999877788889999 589999998754322222
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q 020623 221 GSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 221 ~~~~~~~~~t~~~I~~Fi~ 239 (323)
.+..+.+.|.+|++
T Consensus 84 -----~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 -----SGVKMKSEYREFIE 97 (97)
T ss_pred -----eCCccHHHHHHhhC
Confidence 23356777888763
No 89
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.79 E-value=0.015 Score=44.79 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=62.7
Q ss_pred ecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecccchhhHhhcCCCCCCeEEEec
Q 020623 31 ILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKDFSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 31 ~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~~~~~~~~~~~~~~~p~ivv~k 101 (323)
.|.|.++++.+++.+. +++|-|... ...|.+++..+.+. ..|...+....+++.++++...|++++|+
T Consensus 3 ~i~~~~~~~~~i~~~~---~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLSNKG---LTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHccCC---eEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEE
Confidence 4678999999887655 577777542 24778888888643 55665532256788899999999999998
Q ss_pred CCCCCCccccCCCCHHHHHHHHHh
Q 020623 102 PSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 102 ~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
++ +......|. +.+.|.+||.+
T Consensus 80 ~g-~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 80 NG-ELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CC-EEEEEEecC-ChHHHHHHHhh
Confidence 52 222223453 77889998864
No 90
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=96.70 E-value=0.021 Score=43.55 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=63.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeecc-cchhhHhhcCCCCCCeE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAKD-FSEDTMVLYDFDKVPAL 97 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~~-~~~~~~~~~~~~~~p~i 97 (323)
.|..| +.+++++.++. . .+|-|... .+.|.++|..+.. .+.|+..+. .+.+++.++++...|++
T Consensus 2 ~v~~l-~~~~f~~~~~~-~----~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 2 NVVEL-TDSNWTLVLEG-E----WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI 75 (101)
T ss_pred ceEEc-ChhhHHHHhCC-C----EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence 36677 46788887743 2 45666542 3478888887654 466665532 35677889999999999
Q ss_pred EEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 98 VALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 98 vv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
++++++ +...|.|+.+.++|.+||++
T Consensus 76 ~~~~~g--~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 76 YHAKDG--VFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEeCCC--CEEEecCCCCHHHHHHHHhC
Confidence 999763 33467899999999999964
No 91
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.66 E-value=0.022 Score=43.39 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=62.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhc--CceeEEeecc-c--chhhHhhcCCCCCC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYK--KKAWFAVAKD-F--SEDTMVLYDFDKVP 95 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~--~~~~F~~~~~-~--~~~~~~~~~~~~~p 95 (323)
+..++ .+.++..+++.. +++|-|..+ .+.+.+++..+. ..+.|+..+. . ..+++.++++...|
T Consensus 2 ~~~l~-~~~~~~~~~~~~---~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 77 (104)
T cd02997 2 VVHLT-DEDFRKFLKKEK---HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP 77 (104)
T ss_pred eEEec-hHhHHHHHhhCC---CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence 45664 568888887776 467777542 246677887776 3455554432 2 45677889998899
Q ss_pred eEEEecCCCCCCccccCCCCHHHHHHHH
Q 020623 96 ALVALQPSYNEHNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 96 ~ivv~k~~~~~~~~y~g~~~~~~L~~fI 123 (323)
++++|+++ +....|.|..+.+.|.+||
T Consensus 78 t~~~~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCC-CeeEEeCCCCCHHHHHhhC
Confidence 99999863 3344678888899999885
No 92
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.64 E-value=0.048 Score=43.37 Aligned_cols=98 Identities=18% Similarity=0.306 Sum_probs=64.5
Q ss_pred eeecChhhHHHhhcCCCcEEEEEEe--CCChhHHHHHHHHHHHHHHhCC----CeEEEEEcCcc-----hhhHhhhcCCc
Q 020623 131 SVPINQDTLNLLKDDKRKIVLAIVE--DETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQ-----FADFADTFEAN 199 (323)
Q Consensus 131 v~~~t~~~~~~~~~~~~~~v~~f~~--~~~~e~~~~~~~~l~~~A~~~~----~l~F~~vd~~~-----~~~~~~~~gl~ 199 (323)
+..|+.+||.......+.+++-|.. .- -.+ ...++++|.++. .+.++-||+++ ...+++.|||
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pw-c~k----~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I- 76 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPY-GEK----HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKL- 76 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCC-CCC----hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCC-
Confidence 5789999999988776666555554 21 111 134555554432 39999999954 3457899999
Q ss_pred CCCCCCeEEEEeCCc--ceeeccCCCCCCCC-CCHHHHHHHHHH
Q 020623 200 KKSKLPKMVVWDGNE--NYLTVIGSESIDEE-DQGSQISRFLEG 240 (323)
Q Consensus 200 ~~~~~P~ivI~~~~~--kY~~~~~~~~~~~~-~t~~~I~~Fi~~ 240 (323)
+...+|.|.+....+ ....+ ++. -+.++|.+||+.
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y------~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPY------SGADVTVDALQRFLKG 114 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccC------CCCcccHHHHHHHHHh
Confidence 545899998877531 21111 233 788999999875
No 93
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.58 E-value=0.021 Score=43.09 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=58.6
Q ss_pred HHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCC
Q 020623 37 EVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNE 106 (323)
Q Consensus 37 ~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~ 106 (323)
++++.+.++ +. +++|-|..+ .+.+.+++..+.+.+.|+.++ +...+++.++++...|++++|+++ ..
T Consensus 2 ~f~~~i~~~~~~--~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~ 78 (96)
T cd02956 2 NFQQVLQESTQV--PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG-QP 78 (96)
T ss_pred ChHHHHHhcCCC--eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC-EE
Confidence 345555433 33 567777542 246788898887766665553 236678889999999999999742 22
Q ss_pred CccccCCCCHHHHHHHHH
Q 020623 107 HNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 107 ~~~y~g~~~~~~L~~fI~ 124 (323)
...+.|..+.+.|.+||.
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 335778888999999973
No 94
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.55 E-value=0.042 Score=42.29 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=63.3
Q ss_pred hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---C-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 137 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 137 ~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+++..+.. ++++++.|... .=..-+.+...|.++|+.++ . +.++.+|.+.++.+++.+++ ..+|.+++++.
T Consensus 7 ~~~~~~~~-~~~vlv~f~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I---~~~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVRK-EDIWLVDFYAP-WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV---RGYPTIKLLKG 81 (104)
T ss_pred hhhhhhcc-CCeEEEEEECC-CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC---ccccEEEEEcC
Confidence 45555433 45666666542 12233455667888888763 2 88889999888888889999 57999999865
Q ss_pred CcceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 213 NENYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 213 ~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
...+.+ .+..+.+.|.+|++++
T Consensus 82 ~~~~~~-------~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 DLAYNY-------RGPRTKDDIVEFANRV 103 (104)
T ss_pred CCceee-------cCCCCHHHHHHHHHhh
Confidence 433332 2357889999999875
No 95
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.54 E-value=0.027 Score=44.36 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC----------hhHHHHHHHhhcCceeEEeec-ccchhh
Q 020623 17 LVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----------ESVMSNLALKYKKKAWFAVAK-DFSEDT 85 (323)
Q Consensus 17 Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~----------~~~f~~~A~~~~~~~~F~~~~-~~~~~~ 85 (323)
+|.+|....+=+ .+ |...++++++.+. +++|-|..+ ...+.++|++|.+.+.|+..+ +-.+++
T Consensus 2 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~---~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~l 75 (111)
T cd02965 2 LVARLQTRHGWP--RV-DAATLDDWLAAGG---DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQAL 75 (111)
T ss_pred HhHHHHHhcCCc--cc-ccccHHHHHhCCC---CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHH
Confidence 345555544333 45 5678888886666 467766432 247889999998777676553 346788
Q ss_pred HhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHH
Q 020623 86 MVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120 (323)
Q Consensus 86 ~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~ 120 (323)
+.+|++.+.|++++|+++ .....+.|..+.++|.
T Consensus 76 a~~f~V~sIPTli~fkdG-k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 76 AARFGVLRTPALLFFRDG-RYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHHcCCCcCCEEEEEECC-EEEEEEeCccCHHHHh
Confidence 999999999999999963 2222455766666554
No 96
>PHA02278 thioredoxin-like protein
Probab=96.49 E-value=0.023 Score=44.18 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=58.3
Q ss_pred CChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-cc----chhhHhhcCCCCCCeEEE
Q 020623 33 NSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DF----SEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 33 ~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~----~~~~~~~~~~~~~p~ivv 99 (323)
+|.+++++.+.+.+ +++|-|... .+.|.++|.++.....|...+ +. .++++.++++.+.|++++
T Consensus 2 ~~~~~~~~~i~~~~---~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~ 78 (103)
T PHA02278 2 NSLVDLNTAIRQKK---DVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG 78 (103)
T ss_pred CCHHHHHHHHhCCC---cEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence 56788988887665 577877643 357888887754444444332 11 157888999999999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHH
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEF 122 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~f 122 (323)
|+++ .......|..+.+.|.+|
T Consensus 79 fk~G-~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDG-QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECC-EEEEEEeCCCCHHHHHhh
Confidence 9963 222235577777788776
No 97
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.48 E-value=0.03 Score=55.01 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=67.7
Q ss_pred CCCceecCChHHHHHHHH--hcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecc-cc-hhh-HhhcCC
Q 020623 26 APDVSILNSDAEVSDFVE--NAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKD-FS-EDT-MVLYDF 91 (323)
Q Consensus 26 ~p~v~~i~s~~~l~~fl~--~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~-~~-~~~-~~~~~~ 91 (323)
.+.|..|+ .+.+++.++ +.+. +++|-|... ...|.++|.++.+. +.|+.++. .+ .++ +.++++
T Consensus 350 ~~~Vv~L~-~~nf~~~v~~~~~~k--~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 350 SNNVVSLS-RPGIENLLKLEERKE--AWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCeEECC-HHHHHHHHhhhcCCC--eEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC
Confidence 44678884 678999875 2222 577777542 35789999998764 55655532 12 233 357899
Q ss_pred CCCCeEEEecCCCCCCcccc-CCCCHHHHHHHHHh
Q 020623 92 DKVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQ 125 (323)
Q Consensus 92 ~~~p~ivv~k~~~~~~~~y~-g~~~~~~L~~fI~~ 125 (323)
...|++++|+++......|. |..+.+.|..||+.
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 89999999998644556787 58999999999975
No 98
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.44 E-value=0.045 Score=43.17 Aligned_cols=88 Identities=8% Similarity=0.111 Sum_probs=61.5
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc---ceeeccC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE---NYLTVIG 221 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~---kY~~~~~ 221 (323)
.+.++++.|... .=..-+.+...+.++|..+..+.|..+|.+..+.+++.||+ ...|.+++.+.++ +..+
T Consensus 21 ~~~~vvv~f~a~-wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v---~~vPt~~i~~~g~~~~~~~~--- 93 (113)
T cd02975 21 NPVDLVVFSSKE-GCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV---ERVPTTIFLQDGGKDGGIRY--- 93 (113)
T ss_pred CCeEEEEEeCCC-CCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC---CcCCEEEEEeCCeecceEEE---
Confidence 345555544331 11234667788888998885599999999988888899999 5789999987532 2222
Q ss_pred CCCCCCCCCHHHHHHHHHHHHc
Q 020623 222 SESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 222 ~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
.+......+.+||+++.+
T Consensus 94 ----~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 ----YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ----EecCchHHHHHHHHHHHh
Confidence 123567899999998864
No 99
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.35 E-value=0.082 Score=44.13 Aligned_cols=82 Identities=15% Similarity=0.283 Sum_probs=59.7
Q ss_pred CeeecChhhHHHhhc-C-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCC----
Q 020623 130 LSVPINQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKK---- 201 (323)
Q Consensus 130 lv~~~t~~~~~~~~~-~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~---- 201 (323)
.+.+++++++..... . +.++++.|... .-..-+.+...+.++|+++.+ +.|+.+|.++++.+++.|++ ..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~-wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V-~~~~~v 106 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTT-WSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV-STSPLS 106 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc-eecCCc
Confidence 456777777777543 2 34566666653 223456777899999999873 99999999998888999998 32
Q ss_pred CCCCeEEEEeCC
Q 020623 202 SKLPKMVVWDGN 213 (323)
Q Consensus 202 ~~~P~ivI~~~~ 213 (323)
.++|.+++....
T Consensus 107 ~~~PT~ilf~~G 118 (152)
T cd02962 107 KQLPTIILFQGG 118 (152)
T ss_pred CCCCEEEEEECC
Confidence 358999988754
No 100
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.35 E-value=0.047 Score=41.94 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=58.7
Q ss_pred hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHH---HHHHHhCCC-eEEEEEcCcc----hhhHhhhcCCcCCCCCCeEEE
Q 020623 138 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIKQ----FADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 138 ~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l---~~~A~~~~~-l~F~~vd~~~----~~~~~~~~gl~~~~~~P~ivI 209 (323)
.+.+....++++++.|... .=..-+.+...+ .++++.+++ +.|+.+|.++ ...++..|++ ...|.+++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i---~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTAD-WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV---FGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEcc-hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC---CCCCEEEE
Confidence 3445555677877766642 112223444333 466777774 9999999865 4567888999 57999999
Q ss_pred EeC-Ccc-eeeccCCCCCCCCCCHHHHHHHHH
Q 020623 210 WDG-NEN-YLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 210 ~~~-~~k-Y~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
+++ +++ .... .+..+.++|.++++
T Consensus 79 ~~~~~g~~~~~~------~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRL------PGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCccc------ccccCHHHHHHHhC
Confidence 986 542 2221 34577888888763
No 101
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.34 E-value=0.047 Score=48.60 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCceecCChHHHHHHHHhc----CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCC
Q 020623 27 PDVSILNSDAEVSDFVENA----GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDK 93 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~~~----~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~ 93 (323)
..+.++ +.+.+++++... +. +++|-|... .+.|.++|..+++.+.|+..+. ...+++.++++.+
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~--~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTG--PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCC--CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCc
Confidence 457778 578999887642 12 567777542 2478899999987777776532 3567888999999
Q ss_pred CCeEEEecCCCCCCccc-cCCCCHHHHHHHHHhhcC
Q 020623 94 VPALVALQPSYNEHNIF-YGPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 94 ~p~ivv~k~~~~~~~~y-~g~~~~~~L~~fI~~~~~ 128 (323)
.|++++|+++ ....| .|..+.++|.+|+..+.-
T Consensus 107 ~PTl~~f~~G--~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKG--KMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECC--EEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999853 33334 477899999999987753
No 102
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.28 E-value=0.041 Score=44.71 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEEecCC-------hh---HHHHHHHhhcC-ceeEEeec-ccch
Q 020623 16 LLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-------ES---VMSNLALKYKK-KAWFAVAK-DFSE 83 (323)
Q Consensus 16 ~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-------~~---~f~~~A~~~~~-~~~F~~~~-~~~~ 83 (323)
.++.-|..+ |- ..++ .+.+++|+...+. .++.+..+ .+ ...++|++|.+ ++.|+.++ +.+.
T Consensus 9 ~l~~rl~~~-g~--~~~~-~~~~~~~~~~~~~---~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~ 81 (132)
T PRK11509 9 ALWQRMLAR-GW--TPVS-ESRLDDWLTQAPD---GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE 81 (132)
T ss_pred HHHHHHHHc-CC--Cccc-cccHHHHHhCCCc---EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH
Confidence 345555553 33 3443 4788899988774 34433211 11 57899999973 47777663 3477
Q ss_pred hhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCC
Q 020623 84 DTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 84 ~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Pl 130 (323)
+++.+||+.+.|++++||++ +......|-.+.+.+.+||....-+.
T Consensus 82 ~LA~~fgV~siPTLl~FkdG-k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 82 AIGDRFGVFRFPATLVFTGG-NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred HHHHHcCCccCCEEEEEECC-EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 89999999999999999973 22224567778899999998765443
No 103
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.059 Score=49.38 Aligned_cols=97 Identities=16% Similarity=0.307 Sum_probs=73.0
Q ss_pred ceecCChHHHHH-HHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSD-FVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~-fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~iv 98 (323)
++.++ ..+++. +++.... .|++|.|... .+..++++..|+..+.++.++. .++.++..+|+...|+++
T Consensus 25 I~dvT-~anfe~~V~~~S~~-~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 25 IKDVT-EANFEQEVIQSSRE-VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ceech-HhHHHHHHHHHccC-CCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 67785 477765 4444433 3889988542 2467899999999988887753 477888999999999999
Q ss_pred EecCCCCCC-ccccCCCCHHHHHHHHHhhcCC
Q 020623 99 ALQPSYNEH-NIFYGPFDEEFLEEFIKQNFLP 129 (323)
Q Consensus 99 v~k~~~~~~-~~y~g~~~~~~L~~fI~~~~~P 129 (323)
+|+. +.+ .-|.|..-++.|+.|+..+.-+
T Consensus 103 af~d--GqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKD--GQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeC--CcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9985 333 3588888889999999887655
No 104
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.25 E-value=0.064 Score=41.20 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCcccEEEEecCC--h------hHH---HHHHHhhcCceeEEeeccc-----chhhHhhcCCCCCCeEEE
Q 020623 36 AEVSDFVENAGTFFPLFIGFGLD--E------SVM---SNLALKYKKKAWFAVAKDF-----SEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~~--~------~~f---~~~A~~~~~~~~F~~~~~~-----~~~~~~~~~~~~~p~ivv 99 (323)
+++++.++.+. +++|-|..+ . ..+ .+++..+.+.+.|...+-. ..+++.++++...|++++
T Consensus 2 ~~~~~~~~~~k---~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGK---PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCC---eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 46777777776 567777543 1 122 3567777656666544311 346778899999999999
Q ss_pred ecC-CCCCCccccCCCCHHHHHHHHH
Q 020623 100 LQP-SYNEHNIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 100 ~k~-~~~~~~~y~g~~~~~~L~~fI~ 124 (323)
|++ ..+....+.|..+.+.|.+||+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 986 2233445678889999999873
No 105
>PLN02309 5'-adenylylsulfate reductase
Probab=96.21 E-value=0.057 Score=53.03 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=68.1
Q ss_pred CCceecCChHHHHHHHH--hcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecc--cchhhHh-hcCCC
Q 020623 27 PDVSILNSDAEVSDFVE--NAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKD--FSEDTMV-LYDFD 92 (323)
Q Consensus 27 p~v~~i~s~~~l~~fl~--~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~--~~~~~~~-~~~~~ 92 (323)
+.|..+ +.+++++++. +.+. +++|-|... ...|.++|.++... +.|+..+. ...+++. ++++.
T Consensus 345 ~~Vv~L-t~~nfe~ll~~~~~~k--~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 345 QNVVAL-SRAGIENLLKLENRKE--PWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CCcEEC-CHHHHHHHHHhhcCCC--eEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 467778 4688888774 2332 467776542 35788999988654 77766642 2345564 58999
Q ss_pred CCCeEEEecCCCCCCcccc-CCCCHHHHHHHHHhh
Q 020623 93 KVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQN 126 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~-g~~~~~~L~~fI~~~ 126 (323)
..|++++|+++......|. |..+.+.|..||+.-
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999987644556787 478999999999863
No 106
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.18 E-value=0.089 Score=48.14 Aligned_cols=179 Identities=15% Similarity=0.238 Sum_probs=106.2
Q ss_pred HHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc---eeEEeeccc-chhhHhhcCCCCCCeEEEecCCCCCC
Q 020623 40 DFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK---AWFAVAKDF-SEDTMVLYDFDKVPALVALQPSYNEH 107 (323)
Q Consensus 40 ~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~---~~F~~~~~~-~~~~~~~~~~~~~p~ivv~k~~~~~~ 107 (323)
+|+.+.+.. ..+|-|... ++...++...+++. +..+..+.+ =+.++..+++.+.|+|.++|. +..
T Consensus 36 kFkdnkddd-iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a 112 (468)
T KOG4277|consen 36 KFKDNKDDD-IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DHA 112 (468)
T ss_pred HhhhcccCC-eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--Cee
Confidence 466543322 578887531 34667777766653 222322221 246777899999999999995 566
Q ss_pred ccccCCCCHHHHHHHHHhhcCCCeeecChhhHH--HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEc
Q 020623 108 NIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLN--LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVG 185 (323)
Q Consensus 108 ~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~--~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd 185 (323)
..|.|+.+.++|..|....+-|++.+++..... .+-...+|..++| - +.+ --+.+.+.++|...-.+...+..
T Consensus 113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~-G--tge--~PL~d~fidAASe~~~~a~FfSa 187 (468)
T KOG4277|consen 113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFF-G--TGE--GPLFDAFIDAASEKFSVARFFSA 187 (468)
T ss_pred eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEE-e--CCC--CcHHHHHHHHhhhheeeeeeecc
Confidence 678899999999999999999999999974433 2222335554433 2 122 23556777777754222222221
Q ss_pred CcchhhHh-hhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 186 IKQFADFA-DTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 186 ~~~~~~~~-~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.. ..+ ++-.+ ...|++++...+ .|... ++.+.+.+++||+.
T Consensus 188 se---eVaPe~~~~---kempaV~VFKDe-tf~i~-------de~dd~dLseWinR 229 (468)
T KOG4277|consen 188 SE---EVAPEENDA---KEMPAVAVFKDE-TFEIE-------DEGDDEDLSEWINR 229 (468)
T ss_pred cc---ccCCcccch---hhccceEEEccc-eeEEE-------ecCchhHHHHHHhH
Confidence 11 111 22223 456888876643 35442 23455778888864
No 107
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.17 E-value=0.062 Score=42.59 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=54.3
Q ss_pred hhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 137 DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 137 ~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
+.+..... .++++++-|... --..-+.+...|.++|.++++ +.|+.+|.++.+.+.+.||+ ...|.++++...
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~-WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V---~~iPTf~~fk~G 78 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRD-WDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL---YDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECC-CChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC---CCCCEEEEEECC
Confidence 34444443 345666666542 112345677899999999998 89999999999999999999 579999988854
No 108
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.16 E-value=0.18 Score=40.17 Aligned_cols=104 Identities=18% Similarity=0.342 Sum_probs=62.6
Q ss_pred CCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHH-Hh---CCCeEEEEEcCcchh-----hHhhhcCCc
Q 020623 129 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAA-SA---NRELVFCYVGIKQFA-----DFADTFEAN 199 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A-~~---~~~l~F~~vd~~~~~-----~~~~~~gl~ 199 (323)
+-+..++.-+|.++...-+-+++=| +. .. ..-+-.+.++.+| +. -.++.++.|..++|. .+.+.||+
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKF-D~-ay-PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i- 79 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKF-DV-AY-PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI- 79 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEE-EE-SS---CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT--
T ss_pred CceeeccceehhheeccCceEEEEE-ec-cC-CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC-
Confidence 4567889999999876544332222 21 00 0112334666666 33 334999999998773 46789999
Q ss_pred CCCCCCeEEEEeCC-cceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 200 KKSKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 200 ~~~~~P~ivI~~~~-~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
+..++|.+.+...+ ..+...+. +++++.++|++|+..
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~----~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPF----DGDVTADNLQRFVKS 117 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-T----CS-S-HHHHHHHHHH
T ss_pred CcccCCEEEEecCCCCCCccCCc----cCCccHHHHHHHHHh
Confidence 77889999987753 23322221 457999999999975
No 109
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.15 E-value=0.085 Score=51.91 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=73.7
Q ss_pred CCeeecChhhHHHhhc---CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchh-hHh-hhcCCcCC
Q 020623 129 PLSVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-DFA-DTFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~---~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~-~~~-~~~gl~~~ 201 (323)
+.|.++|.+|++.+.. .++++++.|... --..-+.+...|.++|+++++ +.|+.+|++... .++ +.|++
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyAp-WC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I--- 426 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAP-WCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--- 426 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECC-CChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC---
Confidence 5788999999998764 456777777653 123346677889999999875 889999887543 343 67899
Q ss_pred CCCCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 202 ~~~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
..+|.++++..++ +-..++ .+.-+.++|..||+.+
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~-----~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYP-----SEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCC-----CCCCCHHHHHHHHHhh
Confidence 5899999987643 111111 1346889999999864
No 110
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.13 E-value=0.13 Score=39.58 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=50.9
Q ss_pred hhhHHHhhcC--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchh---hHhhhcCCcCCCCCCeEEEE
Q 020623 136 QDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFA---DFADTFEANKKSKLPKMVVW 210 (323)
Q Consensus 136 ~~~~~~~~~~--~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~---~~~~~~gl~~~~~~P~ivI~ 210 (323)
.+.+...+.. ++++++-|... .-..-+.+...|.++|++++++.|+.+|.+... .+++.+++ ...|.+++.
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V---~~~Pt~~~~ 78 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALK-HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI---IEVPHFLFY 78 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECC-CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC---CcCCEEEEE
Confidence 3455554432 56777777653 122345677899999999966999999987553 67888999 579998887
Q ss_pred eC
Q 020623 211 DG 212 (323)
Q Consensus 211 ~~ 212 (323)
..
T Consensus 79 ~~ 80 (103)
T cd02985 79 KD 80 (103)
T ss_pred eC
Confidence 53
No 111
>PLN02309 5'-adenylylsulfate reductase
Probab=96.10 E-value=0.092 Score=51.63 Aligned_cols=104 Identities=11% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCeeecChhhHHHhhc---CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCc-chhhHhh-hcCCcCC
Q 020623 129 PLSVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-QFADFAD-TFEANKK 201 (323)
Q Consensus 129 Plv~~~t~~~~~~~~~---~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~-~~~~~~~-~~gl~~~ 201 (323)
+.|.+++.+++..+.. .++++++.|+.. --..-+.+...+.++|+++.+ +.|+.+|++ ....++. .|++
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyAp-WC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I--- 420 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAP-WCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--- 420 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC---
Confidence 3678889999988753 456777777653 123346777889999999874 999999998 5555664 6899
Q ss_pred CCCCeEEEEeCCc-ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 202 ~~~P~ivI~~~~~-kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
..+|.++++..+. +...+. .+.-+.++|..||+.+
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~-----~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYP-----SEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecC-----CCCcCHHHHHHHHHHh
Confidence 5899999987643 211111 1245789999999875
No 112
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.06 E-value=0.84 Score=46.20 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=101.2
Q ss_pred HHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecC-CCCCCccccCCCCHHHHHHHHH---hhcCCCeeecChh
Q 020623 63 SNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQP-SYNEHNIFYGPFDEEFLEEFIK---QNFLPLSVPINQD 137 (323)
Q Consensus 63 ~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~-~~~~~~~y~g~~~~~~L~~fI~---~~~~Plv~~~t~~ 137 (323)
+++| .+.+.+.+...+ ..+.+++.+|++...|++++++. ..+....|+|-=.-.++..||. .-+-| =..++.+
T Consensus 389 ~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~-~~~l~~~ 466 (555)
T TIGR03143 389 GEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGP-GQPLGEE 466 (555)
T ss_pred HHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHhcCC-CCCCCHH
Confidence 4555 345556554332 23566778899888899999853 2223467876222333444443 22322 3366888
Q ss_pred hHHHhhcCCCcEE-EEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcce
Q 020623 138 TLNLLKDDKRKIV-LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY 216 (323)
Q Consensus 138 ~~~~~~~~~~~~v-~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY 216 (323)
....+..-++|+- -+|+.. +=..=++..+.++++|..++++..-++|...++.+++.+++ ...|+++|.+ ++.
T Consensus 467 ~~~~i~~~~~~~~i~v~~~~-~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v---~~vP~~~i~~--~~~ 540 (555)
T TIGR03143 467 LLEKIKKITKPVNIKIGVSL-SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGI---MSVPAIVVDD--QQV 540 (555)
T ss_pred HHHHHHhcCCCeEEEEEECC-CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCc---eecCEEEECC--EEE
Confidence 8887776666763 344432 11122567788899999998899999999999999999998 6789998743 122
Q ss_pred eeccCCCCCCCCCCHHHHHHHH
Q 020623 217 LTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 217 ~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
. .+..+.+.|.+++
T Consensus 541 -~-------~G~~~~~~~~~~~ 554 (555)
T TIGR03143 541 -Y-------FGKKTIEEMLELI 554 (555)
T ss_pred -E-------eeCCCHHHHHHhh
Confidence 2 1234667777665
No 113
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.03 E-value=0.058 Score=42.35 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=60.1
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecC-C-------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGL-D-------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~-~-------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~ 100 (323)
+..|++ +++.+.+.+.+...+++|-|.. . .+.+.++|.++. .+.|..++....+++.++++...|++++|
T Consensus 6 v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~~l~~~~~i~~~Pt~~~f 83 (113)
T cd02957 6 VREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKAFLVNYLDIKVLPTLLVY 83 (113)
T ss_pred EEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhhHHHHhcCCCcCCEEEEE
Confidence 567876 8888887765200156777654 2 247888999886 45666553221277889999899999999
Q ss_pred cCCCCCCccc------cC-CCCHHHHHHHH
Q 020623 101 QPSYNEHNIF------YG-PFDEEFLEEFI 123 (323)
Q Consensus 101 k~~~~~~~~y------~g-~~~~~~L~~fI 123 (323)
+++.. ...+ .| +++.+.|++|+
T Consensus 84 ~~G~~-v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 84 KNGEL-IDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred ECCEE-EEEEecHHHhCCCCCCHHHHHHHh
Confidence 97421 1112 22 46788898886
No 114
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.14 Score=49.27 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=84.8
Q ss_pred cccccCCCCChHHHHHHHHHhcCCCceecC-------ChHHHHHHHHhcCCcccEEEEec-CC-------hhHHHHHHHh
Q 020623 4 IPTEYYGPRKAELLVRYLKKFVAPDVSILN-------SDAEVSDFVENAGTFFPLFIGFG-LD-------ESVMSNLALK 68 (323)
Q Consensus 4 ~~~eY~G~R~a~~Iv~~l~k~~~p~v~~i~-------s~~~l~~fl~~~~~~~~~vVgf~-~~-------~~~f~~~A~~ 68 (323)
.+.+|.|.|+++.+..|+.+.+.+.+..+. ....+..+....+. ..+|-|+ +. ...+.++|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~--~~lv~f~aPwc~~ck~l~~~~~~~a~~ 190 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDA--DWLVEFYAPWCGHCKKLAPEWEKLAKL 190 (383)
T ss_pred ceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCc--ceEEEEeccccHHhhhcChHHHHHHHH
Confidence 578999999999999999999877754332 22444444444332 3566554 32 2578888887
Q ss_pred hc--CceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhhcCCC
Q 020623 69 YK--KKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPL 130 (323)
Q Consensus 69 ~~--~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~~Pl 130 (323)
+. ..+..+..+. ....++..+++...|++++|++.......|.|..+.+.|..|+.+..-+.
T Consensus 191 ~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 191 LKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred hccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 75 3344544321 23456778888889999999874331334457889999999999988773
No 115
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=95.77 E-value=0.12 Score=39.72 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeecc-cchhhHhhcCCCCCCeEEEecCC
Q 020623 36 AEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAKD-FSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+++++.. .++ +++|.|..+ ...+.+++..+++ .+.++..+. ..++++.++++...|++++|+.
T Consensus 7 ~~~~~~~-~~~---~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~- 81 (104)
T cd03000 7 DSFKDVR-KED---IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKG- 81 (104)
T ss_pred hhhhhhc-cCC---eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcC-
Confidence 5666643 344 467777542 2478888888753 255554432 3467788999999999999964
Q ss_pred CCCCccccCCCCHHHHHHHHHhh
Q 020623 104 YNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 104 ~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
+....|.|..+.+.|.+|++..
T Consensus 82 -~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 -DLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred -CCceeecCCCCHHHHHHHHHhh
Confidence 3445578989999999999863
No 116
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.72 E-value=0.084 Score=41.33 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=59.5
Q ss_pred ChHHHHH-HHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeecc-cchhhHhhcCCCCCCeEEEec
Q 020623 34 SDAEVSD-FVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAKD-FSEDTMVLYDFDKVPALVALQ 101 (323)
Q Consensus 34 s~~~l~~-fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k 101 (323)
+.+.+++ .+.. .+. +++|-|... ...+.++++++.+ .+.|+.++. .+.+++.++++.+.|++++|+
T Consensus 10 ~~~~~~~~~~~~~~~~--~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 10 TFSQYENEIVPKSFKK--PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eHHHHHHhhccccCCC--eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 4555654 3432 332 677777542 2478889998865 366665532 356788899999999999997
Q ss_pred CCCCCCccccCCCCHHHHHHHHHh
Q 020623 102 PSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 102 ~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
.+ .....+.|..+.+.|.+||.+
T Consensus 88 ~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NG-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CC-EEEEEecCCCCHHHHHHHHhc
Confidence 53 222234688889999999975
No 117
>PTZ00051 thioredoxin; Provisional
Probab=95.65 E-value=0.1 Score=39.39 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=57.2
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~iv 98 (323)
++..++|.++++++++.+. +++|-|..+ .+.+.+++.++. ++.|...+. ...+++.++++.+.|+++
T Consensus 1 ~v~~i~~~~~~~~~~~~~~---~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 76 (98)
T PTZ00051 1 MVHIVTSQAEFESTLSQNE---LVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFK 76 (98)
T ss_pred CeEEecCHHHHHHHHhcCC---eEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEE
Confidence 4678899999999988776 466766542 236777887765 355554432 345678899998999999
Q ss_pred EecCCCCCCccccCCCCHHHHH
Q 020623 99 ALQPSYNEHNIFYGPFDEEFLE 120 (323)
Q Consensus 99 v~k~~~~~~~~y~g~~~~~~L~ 120 (323)
+|+++ .....+.|. ..++|.
T Consensus 77 ~~~~g-~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 77 VFKNG-SVVDTLLGA-NDEALK 96 (98)
T ss_pred EEeCC-eEEEEEeCC-CHHHhh
Confidence 99752 222234564 444443
No 118
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.63 E-value=0.11 Score=40.86 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=59.9
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCCh------hHHHHHHHh---hcCceeEEeecccc-hhhHhhcCCCC--CCe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE------SVMSNLALK---YKKKAWFAVAKDFS-EDTMVLYDFDK--VPA 96 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~~------~~f~~~A~~---~~~~~~F~~~~~~~-~~~~~~~~~~~--~p~ 96 (323)
|++++ .+..+.+.+..- +..+-|+..+ +.|.++|++ ++..+.|..++... ..++..+|++. .|.
T Consensus 1 ~~e~t-~e~~~~~~~~~~---~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREIT-FENAEELTEEGL---PFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPV 76 (111)
T ss_pred Ccccc-cccHHHHhcCCC---CeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence 34553 355556555443 3333333321 367899999 99999998875321 23667788864 688
Q ss_pred EEEecCCCCCCcc-ccCCCCHHHHHHHHHhh
Q 020623 97 LVALQPSYNEHNI-FYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 97 ivv~k~~~~~~~~-y~g~~~~~~L~~fI~~~ 126 (323)
+++.......++. +.+.++.+.|++|+++.
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHH
Confidence 8887652213555 56889999999999864
No 119
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.49 E-value=0.12 Score=39.22 Aligned_cols=85 Identities=7% Similarity=0.103 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCC
Q 020623 37 EVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEH 107 (323)
Q Consensus 37 ~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~ 107 (323)
+++..+.+++. ++++-|... ...+.++++++.+.+.|...+. ..++++.++++.+.|++++|+++ +..
T Consensus 4 ~~~~~~~~~~~--~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v 80 (97)
T cd02949 4 ALRKLYHESDR--LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELV 80 (97)
T ss_pred hHHHHHHhCCC--eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEE
Confidence 45555555443 466666532 2466788888876666665532 35678889999889999999742 222
Q ss_pred ccccCCCCHHHHHHHHH
Q 020623 108 NIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 108 ~~y~g~~~~~~L~~fI~ 124 (323)
..+.|..+.+.|.+||+
T Consensus 81 ~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 81 KEISGVKMKSEYREFIE 97 (97)
T ss_pred EEEeCCccHHHHHHhhC
Confidence 34567778888999874
No 120
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.27 E-value=0.18 Score=37.84 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=56.1
Q ss_pred ChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCC
Q 020623 34 SDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSY 104 (323)
Q Consensus 34 s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~ 104 (323)
|.+++++.+.++.. .+++|-|... .+.+.+++.++...+.|..++. ...+++.++++...|++++|++
T Consensus 1 s~~~~~~~~~~~~~-~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~-- 77 (97)
T cd02984 1 SEEEFEELLKSDAS-KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRN-- 77 (97)
T ss_pred CHHHHHHHHhhCCC-CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEEC--
Confidence 46788888887721 1466666532 2467788888655666655532 3556788999999999999975
Q ss_pred CCCc-cccCCCCHHHHHHHH
Q 020623 105 NEHN-IFYGPFDEEFLEEFI 123 (323)
Q Consensus 105 ~~~~-~y~g~~~~~~L~~fI 123 (323)
++.. .+.| ...+.|.++|
T Consensus 78 g~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred CEEEEEEeC-CCHHHHHHhh
Confidence 2222 2335 3567788776
No 121
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.26 E-value=0.17 Score=40.13 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=49.9
Q ss_pred ChHHHHHHHHh-cCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCC
Q 020623 34 SDAEVSDFVEN-AGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 34 s~~~l~~fl~~-~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
+.+++++.+.. ++. +++|-|... .+.+.++|.++.+.+.|..++ +..++++.++++...|++++||++
T Consensus 1 ~~~~~~~~i~~~~~~--~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 1 SGWAVDQAILSEEEK--VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred CHHHHHHHHhccCCC--EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 35677777764 232 577877642 357899999998776666553 346788999999999999999964
No 122
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.23 E-value=0.22 Score=42.51 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=64.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv 99 (323)
.+..|++.+++.+.+...+...+++|-|..+ .+.+.++|.+|. .+.|..++....+++.++++...|++++
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~~l~~~f~v~~vPTlll 141 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASATGASDEFDTDALPALLV 141 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccchhhHHhCCCCCCCEEEE
Confidence 3678877688888776543111466666542 247889999886 5677665322225788899988999999
Q ss_pred ecCCCCC-Cc-ccc----CCCCHHHHHHHHHhh
Q 020623 100 LQPSYNE-HN-IFY----GPFDEEFLEEFIKQN 126 (323)
Q Consensus 100 ~k~~~~~-~~-~y~----g~~~~~~L~~fI~~~ 126 (323)
|+++..- .. -+. .+|+.+.|+.|+.++
T Consensus 142 yk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 142 YKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9974211 11 111 368889999998764
No 123
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=95.01 E-value=0.23 Score=40.86 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-c--chhhHhhcCCCCCCeEEEecCCC
Q 020623 36 AEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-F--SEDTMVLYDFDKVPALVALQPSY 104 (323)
Q Consensus 36 ~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~--~~~~~~~~~~~~~p~ivv~k~~~ 104 (323)
.+++..+..+. +++|-|... ...+.+++.++.+.+.|..++- . ..+++.+|++...|++++|.+.-
T Consensus 11 ~~~~~a~~~gk---~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALSNGK---PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHHhCCC---EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 34555555555 567777542 2467888888876665654421 1 13567889999999999996421
Q ss_pred CCCccccCCCCHHHHHHHHHhhc
Q 020623 105 NEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 105 ~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
.....+.|..+.+.|.++|....
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHH
Confidence 12224558777888888887644
No 124
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.96 E-value=0.53 Score=41.43 Aligned_cols=116 Identities=20% Similarity=0.171 Sum_probs=71.9
Q ss_pred CCcc--cccCCCCChHHHHHHHHHhcC--CCceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhh
Q 020623 2 HGIP--TEYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKY 69 (323)
Q Consensus 2 ~G~~--~eY~G~R~a~~Iv~~l~k~~~--p~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~ 69 (323)
+|.. ..|.|....+.+.+|+....+ +....+ +.+..+.+.+.+.. +.++.|... ...+.+++...
T Consensus 86 ~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~p--v~I~~F~a~~C~~C~~~~~~l~~l~~~~ 162 (215)
T TIGR02187 86 EGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEP--VRIEVFVTPTCPYCPYAVLMAHKFALAN 162 (215)
T ss_pred CCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCC--cEEEEEECCCCCCcHHHHHHHHHHHHhc
Confidence 4544 368899999999999988742 223445 33334444333331 233435432 13455666553
Q ss_pred cCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 70 KKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 70 ~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+++.|...+ +..++++.++++...|++++++.. . .+.|....+.|.+||..
T Consensus 163 -~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 -DKILGEMIEANENPDLAEKYGVMSVPKIVINKGV--E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred -CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence 345554442 246778889999889999998642 2 16787788899999874
No 125
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.91 E-value=0.49 Score=37.18 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=58.6
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC---ceeEEeecc---cchhhHhhcCCCC
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVAKD---FSEDTMVLYDFDK 93 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~---~~~F~~~~~---~~~~~~~~~~~~~ 93 (323)
++..+ +.+.+++.+.+++. +++|-|... .+.|.++|.++++ .+.|+..+. ...+++.++++..
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~--~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 2 PVIVL-DAASFNSALLGSPS--AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred CeEEC-CHHhHHHHHhcCCC--eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence 46677 56889998877763 577777542 2478889988754 356665531 2346778899988
Q ss_pred CCeEEEecCCCCCC---ccccCC-CCHHHH
Q 020623 94 VPALVALQPSYNEH---NIFYGP-FDEEFL 119 (323)
Q Consensus 94 ~p~ivv~k~~~~~~---~~y~g~-~~~~~L 119 (323)
.|++++|++...+. ..|+|+ ...+.+
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHH
Confidence 99999998753221 356666 344443
No 126
>PHA02278 thioredoxin-like protein
Probab=94.87 E-value=0.59 Score=36.22 Aligned_cols=91 Identities=11% Similarity=0.157 Sum_probs=58.5
Q ss_pred hhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcch----hhHhhhcCCcCCCCCCeEEEEe
Q 020623 137 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMVVWD 211 (323)
Q Consensus 137 ~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~----~~~~~~~gl~~~~~~P~ivI~~ 211 (323)
..+..+...++++++-|... -=..-+.+...|.++|+++.+ +.|+.+|.+.. +.+++.|++ ...|.+++..
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~-WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I---~~iPT~i~fk 80 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQD-NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI---MSTPVLIGYK 80 (103)
T ss_pred HHHHHHHhCCCcEEEEEECC-CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC---ccccEEEEEE
Confidence 45566656667777766652 112335566788888887544 77888888754 467888999 5899999987
Q ss_pred CCcceeeccCCCCCCCCCCHHHHHHH
Q 020623 212 GNENYLTVIGSESIDEEDQGSQISRF 237 (323)
Q Consensus 212 ~~~kY~~~~~~~~~~~~~t~~~I~~F 237 (323)
..+.-... .+..+.+.|.++
T Consensus 81 ~G~~v~~~------~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKY------EDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEE------eCCCCHHHHHhh
Confidence 64322222 223566666654
No 127
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.82 E-value=0.19 Score=36.51 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCC
Q 020623 37 EVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEH 107 (323)
Q Consensus 37 ~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~ 107 (323)
+++..++... +++|-|... ...+.+++.+ ...+.|...+. ...+++..+++.+.|++++|+.+ ...
T Consensus 2 ~~~~~~~~~~---~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~ 76 (93)
T cd02947 2 EFEELIKSAK---PVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG-KEV 76 (93)
T ss_pred chHHHHhcCC---cEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECC-EEE
Confidence 4555666654 456655432 2366677766 44566665532 24678888999889999999763 223
Q ss_pred ccccCCCCHHHHHHHHH
Q 020623 108 NIFYGPFDEEFLEEFIK 124 (323)
Q Consensus 108 ~~y~g~~~~~~L~~fI~ 124 (323)
..+.|..+.+.|.+||.
T Consensus 77 ~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 77 DRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEecCCCHHHHHHHhC
Confidence 34567777789999873
No 128
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=94.70 E-value=0.49 Score=35.56 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=54.0
Q ss_pred hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC-Ccc
Q 020623 138 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG-NEN 215 (323)
Q Consensus 138 ~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~-~~k 215 (323)
.+..+.....+.++.|... .+ ......++++|..+|+ +.|+++... .++..+++ ..|.++++.+ ...
T Consensus 9 ~l~~~~~~~~~~vvg~f~~--~~--~~~~~~f~~~A~~~r~~~~F~~~~~~---~~~~~~~~----~~~~i~l~~~~~~~ 77 (97)
T cd02981 9 ELEKFLDKDDVVVVGFFKD--EE--SEEYKTFEKVAESLRDDYGFGHTSDK---EVAKKLKV----KPGSVVLFKPFEEE 77 (97)
T ss_pred HHHHHhccCCeEEEEEECC--CC--cHHHHHHHHHHHhcccCCeEEEEChH---HHHHHcCC----CCCceEEeCCcccC
Confidence 3455555556667777653 22 2456789999999997 999988743 34444555 2467777754 221
Q ss_pred eeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 216 YLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 216 Y~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.... ++..+.+.|.+||..
T Consensus 78 ~~~y------~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEY------DGEFTEESLVEFIKD 96 (97)
T ss_pred CccC------CCCCCHHHHHHHHHh
Confidence 1111 334678999999874
No 129
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=94.67 E-value=0.37 Score=39.72 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=52.7
Q ss_pred ceecCChHHHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEE
Q 020623 29 VSILNSDAEVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~iv 98 (323)
+..|.|.+++++.+... +. +++|-|+.+ .+.+.++|.++.+.+.|..++ +-.++++..|++...|+++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~--lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEER--LVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCC--EEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 45678999999887633 32 578888653 358899999998777776653 2356889999997566666
Q ss_pred -EecCC
Q 020623 99 -ALQPS 103 (323)
Q Consensus 99 -v~k~~ 103 (323)
+||++
T Consensus 83 ~ffk~g 88 (142)
T PLN00410 83 FFFRNK 88 (142)
T ss_pred EEEECC
Confidence 88863
No 130
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.66 E-value=0.39 Score=37.77 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=57.4
Q ss_pred CeeecChhhHHHhhcC-CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC---C-eEEEEEcCcc--hhhHhhhcCCcCCC
Q 020623 130 LSVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIKQ--FADFADTFEANKKS 202 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~-~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~---~-l~F~~vd~~~--~~~~~~~~gl~~~~ 202 (323)
.+.+++..++...... ++++++.|... .-..-..+...++++|++++ + +.|+.+|+.. .+.+++.|++ .
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~-wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i---~ 77 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYAS-WCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV---T 77 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECC-CCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC---C
Confidence 4678899999887544 45666666653 12234566778888888754 4 8888898753 4567888999 5
Q ss_pred CCCeEEEEeCCc
Q 020623 203 KLPKMVVWDGNE 214 (323)
Q Consensus 203 ~~P~ivI~~~~~ 214 (323)
.+|.++++....
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 789999987643
No 131
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.62 E-value=0.18 Score=39.72 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=47.6
Q ss_pred HHHHHHHhhc-CceeEEeeccc-chhhHhhcCCC--C--CCeEEEecCCCCCCccccCCC-CHHHHHHHHHhh
Q 020623 61 VMSNLALKYK-KKAWFAVAKDF-SEDTMVLYDFD--K--VPALVALQPSYNEHNIFYGPF-DEEFLEEFIKQN 126 (323)
Q Consensus 61 ~f~~~A~~~~-~~~~F~~~~~~-~~~~~~~~~~~--~--~p~ivv~k~~~~~~~~y~g~~-~~~~L~~fI~~~ 126 (323)
.|.++|++++ ..+.|+.++.. ...++..+|++ + .|++++... .+.++...+++ +.+.|.+|+++.
T Consensus 39 ~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~-~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 39 RVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTA-KGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeC-CCCccCCCcccCCHHHHHHHHHHh
Confidence 6789999999 69999887432 12356677876 3 798888764 23455556788 999999999763
No 132
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.61 E-value=0.59 Score=37.06 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=58.3
Q ss_pred hhcCC-CcEEEEEEeCCChhHHHHHHHHH---HHHHHhCCC-eEEEEEcCcch-------------hhHhhhcCCcCCCC
Q 020623 142 LKDDK-RKIVLAIVEDETEEKSQKLVTTL---KAAASANRE-LVFCYVGIKQF-------------ADFADTFEANKKSK 203 (323)
Q Consensus 142 ~~~~~-~~~v~~f~~~~~~e~~~~~~~~l---~~~A~~~~~-l~F~~vd~~~~-------------~~~~~~~gl~~~~~ 203 (323)
....+ +|+++.|... .=..-+.+...+ ..+++.+++ +.++.+|.+.. ..+...|++ ..
T Consensus 9 a~~~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v---~~ 84 (125)
T cd02951 9 AAADGKKPLLLLFSQP-GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV---RF 84 (125)
T ss_pred HHHcCCCcEEEEEeCC-CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC---cc
Confidence 34456 7887777652 111123333322 234444444 77888887642 356778888 57
Q ss_pred CCeEEEEeCC-cceeeccCCCCCCCCCCHHHHHHHHHHHHcCc
Q 020623 204 LPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEGYREGR 245 (323)
Q Consensus 204 ~P~ivI~~~~-~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gk 245 (323)
.|.+++++.+ ++-... +.+..+.+.+.+++++++++.
T Consensus 85 ~Pt~~~~~~~gg~~~~~-----~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 85 TPTVIFLDPEGGKEIAR-----LPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred ccEEEEEcCCCCceeEE-----ecCCCCHHHHHHHHHHHHhhh
Confidence 8999999987 543221 123467889999999998764
No 133
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.61 E-value=0.28 Score=35.47 Aligned_cols=67 Identities=7% Similarity=0.107 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 162 SQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 162 ~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
-+.+...|.++|+.++. +.+..+|.++.+...+.+|+ ...|.+++ + ++... .+..+.+.|.++++.
T Consensus 14 C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~vPt~~~-~--g~~~~-------~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 14 CPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI---MAVPAIVI-N--GDVEF-------IGAPTKEELVEAIKK 80 (82)
T ss_pred hHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC---ccCCEEEE-C--CEEEE-------ecCCCHHHHHHHHHh
Confidence 35667788899988876 99999999877777888999 46899876 3 33222 123567888888876
Q ss_pred H
Q 020623 241 Y 241 (323)
Q Consensus 241 ~ 241 (323)
.
T Consensus 81 ~ 81 (82)
T TIGR00411 81 R 81 (82)
T ss_pred h
Confidence 4
No 134
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=94.44 E-value=0.51 Score=36.25 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=56.3
Q ss_pred ChHHHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-cc---hhhHhhcCCCCCCeEEEe
Q 020623 34 SDAEVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-FS---EDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 34 s~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-~~---~~~~~~~~~~~~p~ivv~ 100 (323)
|.+++++.+.+. +. +++|-|... .+.+.++|..+ ..+.|...+. .+ .+++.++++...|++++|
T Consensus 2 ~~~~~~~~i~~~~~k--~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGR--LVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCC--EEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 567888888764 22 577777542 24788889888 4566655432 12 267889999999999999
Q ss_pred cCCCCCCccccCCCCHHHHHHHHHh
Q 020623 101 QPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 101 k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+++ +....+.|. ....|..-|..
T Consensus 79 ~~G-~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 79 KDG-EKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred eCC-eEEEEEeCC-CHHHHHHHHHh
Confidence 753 222345564 45666665543
No 135
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.25 E-value=0.4 Score=43.78 Aligned_cols=113 Identities=15% Similarity=0.269 Sum_probs=62.6
Q ss_pred cCCCeeecCh-hhHHHhhcC-C--CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCC
Q 020623 127 FLPLSVPINQ-DTLNLLKDD-K--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 202 (323)
Q Consensus 127 ~~Plv~~~t~-~~~~~~~~~-~--~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~ 202 (323)
++.-|.+++. +.+-..... + ..+|+.|+.. +...-..+-..|..+|++|+.+.|+-+.+..-+ +...|.. .
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~-~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~---~ 197 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEP-GFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD---K 197 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-T-TSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T---T
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeC-CCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc---c
Confidence 3566777753 556555432 2 2344555543 334456677899999999999999988875432 4556655 6
Q ss_pred CCCeEEEEeCCc---ceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccc
Q 020623 203 KLPKMVVWDGNE---NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 248 (323)
Q Consensus 203 ~~P~ivI~~~~~---kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~ 248 (323)
.+|+|++..... .+--.. ..+..+++.+.|..|+..+ |-|+-
T Consensus 198 ~LPtllvYk~G~l~~~~V~l~--~~~g~df~~~dlE~~L~~~--G~l~~ 242 (265)
T PF02114_consen 198 NLPTLLVYKNGDLIGNFVGLT--DLLGDDFFTEDLEAFLIEY--GVLPE 242 (265)
T ss_dssp C-SEEEEEETTEEEEEECTGG--GCT-TT--HHHHHHHHHTT--TSSS-
T ss_pred CCCEEEEEECCEEEEeEEehH--HhcCCCCCHHHHHHHHHHc--CCCCC
Confidence 899999887532 222111 1124568999999999854 54443
No 136
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.23 E-value=0.69 Score=35.54 Aligned_cols=90 Identities=12% Similarity=0.187 Sum_probs=56.4
Q ss_pred ChhhHHHhhc-CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~-~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+.+.+..+.. .....++.|... .+ ....+.|.++|..+|+ +.|.+.... .+...+++ ..|.++++..
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~--~~--~~~~~~F~~vA~~~R~d~~F~~~~~~---~~~~~~~~----~~~~i~l~~~ 75 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKS--ED--SEHYKAFEEAAEEFHPYIKFFATFDS---KVAKKLGL----KMNEVDFYEP 75 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECC--CC--CHHHHHHHHHHHhhhcCCEEEEECcH---HHHHHcCC----CCCcEEEeCC
Confidence 4455677776 444555556542 12 2345789999999987 999776543 33455566 3578888754
Q ss_pred -Cccee-eccCCCCCCCCCCHHHHHHHHHHH
Q 020623 213 -NENYL-TVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 213 -~~kY~-~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
..... +. ++.++.+.|.+||+.-
T Consensus 76 ~~e~~~~y~------~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 76 FMEEPVTIP------DKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCcccC------CCCCCHHHHHHHHHHh
Confidence 32211 21 2357889999999754
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=94.01 E-value=2.4 Score=37.17 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=88.6
Q ss_pred cCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCC
Q 020623 32 LNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 32 i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
..+.+++.++++.+.- .+++.|... .+.+.++|+++. .+.|..++ .+ +++...|++++|+++
T Consensus 3 ~~~~ee~~~~i~~~~g--~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~---~d----~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 3 FIKKEEKDKLIESNTG--KLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVN---LA----DANNEYGVFEFYQNS 72 (204)
T ss_pred CCCHHHHHHHHhcCCC--cEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEc---cc----cCcccceEEEEEECC
Confidence 4578899998886522 355656332 247788898885 57787762 23 788889999999863
Q ss_pred CCCCccccCCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCC-C-h--hHHHHHHHHHHHHHHhCCCe
Q 020623 104 YNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE-T-E--EKSQKLVTTLKAAASANREL 179 (323)
Q Consensus 104 ~~~~~~y~g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~-~-~--e~~~~~~~~l~~~A~~~~~l 179 (323)
. .-..+.|. +...|..+++.+.-+.-..-..+....+.++ .|+++ |.... + + .-..+.++.|++ + ++
T Consensus 73 ~-~i~r~~G~-~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~-~~Vvv-f~Kg~~~~p~C~~C~~~k~~L~~----~-~i 143 (204)
T PTZ00062 73 Q-LINSLEGC-NTSTLVSFIRGWAQKGSSEDTVEKIERLIRN-HKILL-FMKGSKTFPFCRFSNAVVNMLNS----S-GV 143 (204)
T ss_pred E-EEeeeeCC-CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCEEE-EEccCCCCCCChhHHHHHHHHHH----c-CC
Confidence 1 12234554 5777888888776653332222334444433 56654 54421 0 0 112334444443 2 36
Q ss_pred EEEEEcCcchhhHhhhcC-CcCCCCCCeEEEE
Q 020623 180 VFCYVGIKQFADFADTFE-ANKKSKLPKMVVW 210 (323)
Q Consensus 180 ~F~~vd~~~~~~~~~~~g-l~~~~~~P~ivI~ 210 (323)
.|...|..+-....+.+. ++.....|+|.|.
T Consensus 144 ~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 144 KYETYNIFEDPDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred CEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 666777753333222221 1111468998763
No 138
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.79 E-value=0.68 Score=35.76 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=55.5
Q ss_pred hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC-
Q 020623 136 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN- 213 (323)
Q Consensus 136 ~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~- 213 (323)
.+.+..+.......++.|.... + ....+.+.++|..+|+ +.|.++... .++..+++ .|.++++.+.
T Consensus 8 ~~~l~~f~~~~~~~Vvg~f~~~--~--~~~~~~F~~vA~~~R~d~~F~~~~~~---~~~~~~~~-----~~~ivl~~p~~ 75 (104)
T cd03069 8 EAEFEKFLSDDDASVVGFFEDE--D--SKLLSEFLKAADTLRESFRFAHTSDK---QLLEKYGY-----GEGVVLFRPPR 75 (104)
T ss_pred HHHHHHHhccCCcEEEEEEcCC--C--chHHHHHHHHHHhhhhcCEEEEEChH---HHHHhcCC-----CCceEEEechh
Confidence 4456666655555666666531 1 2455788999999987 999887654 33444544 4567787542
Q ss_pred --cceeeccCCCCCCCCCCHHHHHHHHHH
Q 020623 214 --ENYLTVIGSESIDEEDQGSQISRFLEG 240 (323)
Q Consensus 214 --~kY~~~~~~~~~~~~~t~~~I~~Fi~~ 240 (323)
.+|. ++....+++++.+.|.+||+.
T Consensus 76 ~~~k~d--e~~~~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 76 LSNKFE--DSSVKFDGDLDSSKIKKFIRE 102 (104)
T ss_pred hhcccC--cccccccCcCCHHHHHHHHHh
Confidence 1221 111112445788999999975
No 139
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=93.75 E-value=1.5 Score=36.05 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=48.9
Q ss_pred hhHHHhhc--CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEE-EEeC
Q 020623 137 DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV-VWDG 212 (323)
Q Consensus 137 ~~~~~~~~--~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv-I~~~ 212 (323)
+.+..... .++++++-|...- -..-..+-..|.++|+++++ ..|+.+|.++.+.+++.|++ . ..|.++ +...
T Consensus 12 ~e~d~~I~~~~~~lVVvdF~A~W-CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I-~--~~~t~~~ffk~ 87 (142)
T PLN00410 12 WAVDQAILAEEERLVVIRFGHDW-DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYEL-Y--DPCTVMFFFRN 87 (142)
T ss_pred HHHHHHHHhcCCCEEEEEEECCC-ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCc-c--CCCcEEEEEEC
Confidence 44444332 3466666666521 12234566799999999999 88899999999999999999 3 344444 5554
No 140
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.76 Score=35.88 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=50.9
Q ss_pred cEEEEecCC--------hhHHHHHHHhhcCceeEEeeccc--chhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHH
Q 020623 50 PLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDF--SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFL 119 (323)
Q Consensus 50 ~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~--~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L 119 (323)
+++|-|+.. .+.|.++|.+|.+ +.|..++ . ..+++..+++...|++++||.+ ++..-+-|. +.+.|
T Consensus 23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvd-vde~~~~~~~~~V~~~PTf~f~k~g-~~~~~~vGa-~~~~l 98 (106)
T KOG0907|consen 23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVD-VDELEEVAKEFNVKAMPTFVFYKGG-EEVDEVVGA-NKAEL 98 (106)
T ss_pred eEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEe-cccCHhHHHhcCceEeeEEEEEECC-EEEEEEecC-CHHHH
Confidence 567777542 4689999999997 7776552 2 4778889999889999999873 333334454 44577
Q ss_pred HHHHHhh
Q 020623 120 EEFIKQN 126 (323)
Q Consensus 120 ~~fI~~~ 126 (323)
++.|..+
T Consensus 99 ~~~i~~~ 105 (106)
T KOG0907|consen 99 EKKIAKH 105 (106)
T ss_pred HHHHHhc
Confidence 7777654
No 141
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=92.87 E-value=1.2 Score=35.50 Aligned_cols=93 Identities=18% Similarity=0.297 Sum_probs=58.7
Q ss_pred hhHHHhhcC--CCcEEEEEEeCCCh------hHHHHHHHHHHHHHHhCCC-eEEEEEcCcch-------hhHhhhcCCcC
Q 020623 137 DTLNLLKDD--KRKIVLAIVEDETE------EKSQKLVTTLKAAASANRE-LVFCYVGIKQF-------ADFADTFEANK 200 (323)
Q Consensus 137 ~~~~~~~~~--~~~~v~~f~~~~~~------e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~-------~~~~~~~gl~~ 200 (323)
+++...... ++|+++.|....+. ..=..+...|++++.++++ +.|+.+|.++. ..+...+++ .
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~ 88 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-T 88 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-c
Confidence 344444433 57887777762221 1113455789999999995 99999998653 356677888 4
Q ss_pred CCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHH
Q 020623 201 KSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 201 ~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
..+|.+++++..++-- + ++=++...++.|+
T Consensus 89 -~~iPT~~~~~~~~~l~---~----~~c~~~~~~~~~~ 118 (119)
T cd02952 89 -TGVPTLLRWKTPQRLV---E----DECLQADLVEMFF 118 (119)
T ss_pred -cCCCEEEEEcCCceec---c----hhhcCHHHHHHhh
Confidence 5899999996543321 1 1225667777775
No 142
>PTZ00062 glutaredoxin; Provisional
Probab=92.78 E-value=1.7 Score=38.03 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=46.4
Q ss_pred hhhHHHhhcCC-CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 136 QDTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 136 ~~~~~~~~~~~-~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
.+.+..+..++ ...++.|... --+.-+++...|.++|++|+++.|+.+|.+ +++ ...|.+++....
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~-w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V---~~vPtfv~~~~g 72 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSS-KEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN---NEYGVFEFYQNS 72 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCC-CCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc---ccceEEEEEECC
Confidence 34444554433 3455555442 234567888999999999999999999976 777 578999987754
No 143
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.76 E-value=0.97 Score=35.23 Aligned_cols=93 Identities=15% Similarity=0.255 Sum_probs=53.9
Q ss_pred ChhhHHHhhcCC-CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 135 NQDTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 135 t~~~~~~~~~~~-~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
+.+.+..+.... ...++.|.... + ....+.+.++|..+|+ +.|.++... .++..+++ ..|.++++.+
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~--~--~~~~~~F~~vA~~~Rdd~~F~~t~~~---~~~~~~~~----~~~~vvl~rp 75 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGE--E--DPAYQLYQDAANSLREDYKFHHTFDS---EIFKSLKV----SPGQLVVFQP 75 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCC--C--CHHHHHHHHHHHhcccCCEEEEEChH---HHHHhcCC----CCCceEEECc
Confidence 345566665544 45556665421 1 2345678999999998 999887654 34455676 2466888866
Q ss_pred C---cceeeccCCCCCCCC-CCH-HHHHHHHHH
Q 020623 213 N---ENYLTVIGSESIDEE-DQG-SQISRFLEG 240 (323)
Q Consensus 213 ~---~kY~~~~~~~~~~~~-~t~-~~I~~Fi~~ 240 (323)
. .||... ....++. .+. ++|.+||+.
T Consensus 76 ~~~~~k~e~~--~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 76 EKFQSKYEPK--SHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHhhhcCcc--eeeeeccccchHHHHHHHHhc
Confidence 3 244221 0001222 344 449999874
No 144
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.52 E-value=2.6 Score=33.56 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=61.6
Q ss_pred CeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcc-----------hhhHhhhcCC
Q 020623 130 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----------FADFADTFEA 198 (323)
Q Consensus 130 lv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~-----------~~~~~~~~gl 198 (323)
-+.+++.+.+.....++...++.|... .=..=+.+...|.+++++.+ +.|.++|.+. +..+.+.+++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~-~Cp~C~~~~P~l~~~~~~~~-~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRK-TCPYCRKFSGTLSGVVAQTK-APIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECC-CChhHHHHhHHHHHHHHhcC-CcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 355677777877776666655545432 22233567788999999844 5555666652 2244456665
Q ss_pred c-CCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 199 N-KKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 199 ~-~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
. .-...|.+++....+.-....| ...+.+.|.+|+.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G-----~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCG-----SSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeC-----CCCCHHHHHHHhh
Confidence 2 2245899998776431111122 2357899998874
No 145
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=92.34 E-value=1.5 Score=34.63 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=49.0
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
.++++++=|...-. ..-..+-..|.++|+++++ +.|..+|.++.+.+.+.+++ ...|.++.+..
T Consensus 13 ~~klVVVdF~a~WC-~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I---~amPtfvffkn 77 (114)
T cd02986 13 AEKVLVLRFGRDED-AVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI---SYIPSTIFFFN 77 (114)
T ss_pred CCCEEEEEEeCCCC-hhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc---eeCcEEEEEEC
Confidence 35677776765321 2234565899999999999 99999999999999999999 45798886654
No 146
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=1.5 Score=34.26 Aligned_cols=64 Identities=16% Similarity=0.363 Sum_probs=48.1
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~ 213 (323)
++++++-|+.. -=..-+.+...+.++|.+|+++.|+.+|.++...+++.+++ ...|.++++...
T Consensus 21 ~kliVvdF~a~-wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V---~~~PTf~f~k~g 84 (106)
T KOG0907|consen 21 DKLVVVDFYAT-WCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNV---KAMPTFVFYKGG 84 (106)
T ss_pred CCeEEEEEECC-CCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCc---eEeeEEEEEECC
Confidence 36666656541 11122456679999999999999999999987778899998 578999988764
No 147
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=1 Score=40.46 Aligned_cols=97 Identities=22% Similarity=0.307 Sum_probs=65.7
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEE
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv 99 (323)
+|++|++.++++.-+...+.. .++|-|..+ .+.|+.+|.+|..-++..+--+.-...+..+|+...|+.++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k-~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGK-LVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhccCce-EEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 689999999999877766642 467778643 46899999999755544432111123345678888999999
Q ss_pred ecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 100 LQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|+++ -....+.|. +...|+.-|.++.
T Consensus 81 f~ng-~kid~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 81 FRNG-VKIDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred EecC-eEeeeecCC-CHHHHHHHHHHHh
Confidence 9973 223346665 5666777777664
No 148
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=91.97 E-value=1.9 Score=34.04 Aligned_cols=88 Identities=10% Similarity=0.132 Sum_probs=54.0
Q ss_pred hHHHHHHHHhc-CCcccEEEEecCC--h------hHH---HHHHHhhcCceeEEeeccc--------------chhhHhh
Q 020623 35 DAEVSDFVENA-GTFFPLFIGFGLD--E------SVM---SNLALKYKKKAWFAVAKDF--------------SEDTMVL 88 (323)
Q Consensus 35 ~~~l~~fl~~~-~~~~~~vVgf~~~--~------~~f---~~~A~~~~~~~~F~~~~~~--------------~~~~~~~ 88 (323)
.+++++.++++ + +++|-|..+ . ..+ ..++..+.+.+.+...+-. ..+++.+
T Consensus 3 ~~~~~~a~~~~~k---~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 3 YEDLAEAAADGKK---PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHHcCCC---cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 46777777777 5 567777543 1 112 1444555545544333211 2467788
Q ss_pred cCCCCCCeEEEecCC-CCCCccccCCCCHHHHHHHHHh
Q 020623 89 YDFDKVPALVALQPS-YNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 89 ~~~~~~p~ivv~k~~-~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
+++...|+++++.+. -+....+.|..+.+.+.++|..
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 999899999999873 1222345687777888888765
No 149
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=91.60 E-value=2.8 Score=32.81 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=45.9
Q ss_pred hHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCCCC-CCccccCCCCHHHHHHHHHh
Q 020623 60 SVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPSYN-EHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~~~-~~~~y~g~~~~~~L~~fI~~ 125 (323)
..+.++|..+ +.+.|...+ +..++++.+|++...|++++|+.+.. ....|.|--...+|.+||..
T Consensus 42 ~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 42 QLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIED 108 (113)
T ss_pred HHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHH
Confidence 4677788766 456565542 24677888999999999999986322 23357786677889998864
No 150
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=91.55 E-value=1.7 Score=34.44 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=47.7
Q ss_pred hHHHHHHHHhc-CCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCeEEEecCC
Q 020623 35 DAEVSDFVENA-GTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPALVALQPS 103 (323)
Q Consensus 35 ~~~l~~fl~~~-~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ivv~k~~ 103 (323)
.++++..+.+. +. +++|-|+.. ++.|.++|.++.+.+.|..++ +..++++..|++...|+.++|+++
T Consensus 2 ~~~~d~~i~~~~~k--lVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKSTAEK--VLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhcCCC--EEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 46677666543 32 677878653 358899999997657676653 235778899999778999999863
No 151
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.34 E-value=1.8 Score=36.07 Aligned_cols=73 Identities=14% Similarity=0.273 Sum_probs=50.7
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcC-ceeEEeec-ccchhhHhhcCCCC-----
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK-KAWFAVAK-DFSEDTMVLYDFDK----- 93 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~-~~~F~~~~-~~~~~~~~~~~~~~----- 93 (323)
+..+ +.+++++.+..+... +++|-|... ...|.++|.++.+ .+.|+.++ +..++++.++++..
T Consensus 30 v~~l-~~~~f~~~l~~~~~~-~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 30 IKYF-TPKTLEEELERDKRV-TWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred cEEc-CHHHHHHHHHhcCCC-EEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 5667 468898888654321 567777542 2478889988864 47776664 23567888888866
Q ss_pred -CCeEEEecCC
Q 020623 94 -VPALVALQPS 103 (323)
Q Consensus 94 -~p~ivv~k~~ 103 (323)
.|++++|+++
T Consensus 108 ~~PT~ilf~~G 118 (152)
T cd02962 108 QLPTIILFQGG 118 (152)
T ss_pred CCCEEEEEECC
Confidence 7999999863
No 152
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=91.25 E-value=3.3 Score=35.88 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=59.0
Q ss_pred CceecCChHHHHHHH-HhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEE
Q 020623 28 DVSILNSDAEVSDFV-ENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALV 98 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl-~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~iv 98 (323)
.|..|+ .+++..-+ +..... +++|-|+.. ...+.++|.+|. .+.|..++ .+....+|++...|+++
T Consensus 83 ~v~eis-~~~f~~eV~~as~~~-~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~--ad~~~~~~~i~~lPTll 157 (192)
T cd02988 83 EVYEIS-KPDYVREVTEASKDT-WVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKII--STQCIPNYPDKNLPTIL 157 (192)
T ss_pred eEEEeC-HHHHHHHHHhcCCCC-EEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEE--hHHhHhhCCCCCCCEEE
Confidence 467784 56665444 333211 466766542 357889999986 46676553 23445688888899999
Q ss_pred EecCCCCC-Cc----cccC-CCCHHHHHHHHHhh
Q 020623 99 ALQPSYNE-HN----IFYG-PFDEEFLEEFIKQN 126 (323)
Q Consensus 99 v~k~~~~~-~~----~y~g-~~~~~~L~~fI~~~ 126 (323)
+|+++..- +. .+-| .++.++|+.++.+.
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99974221 11 1223 58889999988753
No 153
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=91.14 E-value=3.8 Score=32.84 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=57.5
Q ss_pred cChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHH-HH--HHHHHh-CCCeEEEEEcCcchhhHhh--------hcCCcCC
Q 020623 134 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT-TL--KAAASA-NRELVFCYVGIKQFADFAD--------TFEANKK 201 (323)
Q Consensus 134 ~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~-~l--~~~A~~-~~~l~F~~vd~~~~~~~~~--------~~gl~~~ 201 (323)
.+.+.+......++|+++.|... -=..=..+.+ .+ .++++. ++++.++.+|.++.+.... .+|.
T Consensus 3 ~~~eal~~Ak~~~KpVll~f~a~-WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~--- 78 (124)
T cd02955 3 WGEEAFEKARREDKPIFLSIGYS-TCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ--- 78 (124)
T ss_pred CCHHHHHHHHHcCCeEEEEEccC-CCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC---
Confidence 34556666666778887766431 0011112211 12 134444 3358889999876543322 2465
Q ss_pred CCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 202 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
...|.+++++++++-....+.....++.+...+..+++.++
T Consensus 79 ~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 79 GGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred CCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 57999999999753211111111134566777888887765
No 154
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=90.61 E-value=3.4 Score=32.89 Aligned_cols=91 Identities=10% Similarity=0.182 Sum_probs=53.2
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecc-----cc-----hhhHhhcC
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKD-----FS-----EDTMVLYD 90 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~-----~~-----~~~~~~~~ 90 (323)
...| +.+++.+.+++.+. .+|.|+.. .+.+.+++++.+..+.+..++. .. .++..+++
T Consensus 8 ~~~i-t~~~~~~~i~~~~~---~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 8 LEVT-TVVRALEALDKKET---ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ceec-CHHHHHHHHHcCCc---EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 3455 57888888887763 35555432 3578888887543444433321 11 12334454
Q ss_pred C----CCCCeEEEecCCCCCCccccC-CCCHHHHHHHHH
Q 020623 91 F----DKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIK 124 (323)
Q Consensus 91 ~----~~~p~ivv~k~~~~~~~~y~g-~~~~~~L~~fI~ 124 (323)
+ ...|++++|+++ .......| ..+.++|++|+.
T Consensus 84 i~~~i~~~PT~v~~k~G-k~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDG-KQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCC-eEEEEEeCCCCCHHHHHHHhh
Confidence 3 348999999974 22223446 446889999874
No 155
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=89.91 E-value=5 Score=33.39 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=29.5
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
...+.||+ ...|.+++++.+++-...- .+..+.+.+.++++.++
T Consensus 129 ~~~~~~~v---~~~P~~~lid~~g~i~~~~-----~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 129 QVIDAYGV---GPLPTTFLIDKDGKVVKVI-----TGEMTEEQLEEYLEKIK 172 (173)
T ss_pred hHHHHcCC---CCcCeEEEECCCCcEEEEE-----eCCCCHHHHHHHHHHhc
Confidence 44567787 4689999999876432210 23467888999888653
No 156
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=89.88 E-value=1.2 Score=31.02 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 163 QKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.+...|.+++..+.++.|..+|.+..+.+.+.+|+ ...|+++|
T Consensus 15 ~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i---~~vPti~i 58 (67)
T cd02973 15 PDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV---MSVPAIVI 58 (67)
T ss_pred HHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC---cccCEEEE
Confidence 455667788877776799999999887778888999 46899876
No 157
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=89.70 E-value=2.1 Score=32.14 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=44.6
Q ss_pred CCCcEE-EEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 145 DKRKIV-LAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 145 ~~~~~v-~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
..+|+- .+|+.. .=..=+.....+.+++..+.++.|..+|.++++..++.+|+ ...|+++|
T Consensus 10 l~~pv~i~~F~~~-~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V---~~vPt~vi 71 (89)
T cd03026 10 LNGPINFETYVSL-SCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI---MSVPAIFL 71 (89)
T ss_pred cCCCEEEEEEECC-CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC---ccCCEEEE
Confidence 346763 455542 11122456677889999888899999999988888999999 57999976
No 158
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=89.52 E-value=3.3 Score=31.99 Aligned_cols=92 Identities=11% Similarity=0.167 Sum_probs=59.1
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCCh-------hHHHHHHHhhcCceeEEeecc---cchhhHhhcCCC----CCC
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-------SVMSNLALKYKKKAWFAVAKD---FSEDTMVLYDFD----KVP 95 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~~-------~~f~~~A~~~~~~~~F~~~~~---~~~~~~~~~~~~----~~p 95 (323)
..|++..++++++..... ++|.|..+. ..|.++|...+..-..+.++. -+..++++++++ ..|
T Consensus 4 e~i~d~KdfKKLLRTr~N---VLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 4 EDISDHKDFKKLLRTRNN---VLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred ccccchHHHHHHHhhcCc---EEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 457778889998887652 577775431 378899999887755555432 245678888775 233
Q ss_pred e-EEEecCCCCCCccccCCCCHHHHHHHHHh
Q 020623 96 A-LVALQPSYNEHNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 96 ~-ivv~k~~~~~~~~y~g~~~~~~L~~fI~~ 125 (323)
. +.-|+.+ +=+-.|+-+++...|..|+++
T Consensus 81 ~~LkHYKdG-~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDG-DFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCC-CccccccchhhHHHHHHHhhC
Confidence 2 2223321 113357777888999999875
No 159
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=88.50 E-value=1.8 Score=39.49 Aligned_cols=98 Identities=18% Similarity=0.108 Sum_probs=51.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~ 100 (323)
|..|.+.+.+-+.+....-...+||-++.+ +..+..+|.+|. .+.|.-+......+..+|.....|+|++|
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~~~~~f~~~~LPtllvY 205 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCPASENFPDKNLPTLLVY 205 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCCTTTTS-TTC-SEEEEE
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccCcccCCcccCCCEEEEE
Confidence 677877676666554432111244444432 246788999987 45554331111124556766678999999
Q ss_pred cCCCC-CCc-cc----cCCCCHHHHHHHHHhhc
Q 020623 101 QPSYN-EHN-IF----YGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 101 k~~~~-~~~-~y----~g~~~~~~L~~fI~~~~ 127 (323)
+.+.- ... .+ ..+|+..+|+.|+.++.
T Consensus 206 k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 206 KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp ETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 97421 121 12 13688899999998775
No 160
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=7 Score=36.28 Aligned_cols=124 Identities=14% Similarity=0.202 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCCeeecChhhHHHhhcCC-CcEEEEEEeCC-ChhH----HHHHHHHHHHHHHhCC-------C--eEEEE
Q 020623 119 LEEFIKQNFLPLSVPINQDTLNLLKDDK-RKIVLAIVEDE-TEEK----SQKLVTTLKAAASANR-------E--LVFCY 183 (323)
Q Consensus 119 L~~fI~~~~~Plv~~~t~~~~~~~~~~~-~~~v~~f~~~~-~~e~----~~~~~~~l~~~A~~~~-------~--l~F~~ 183 (323)
+.+-+.-.+---|..++.+++.++...+ ++.-++..... .... -.+..++++-+|..++ + +-|+.
T Consensus 30 v~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~ 109 (331)
T KOG2603|consen 30 VVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCM 109 (331)
T ss_pred HHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEE
Confidence 4443332444567888888888876543 55532222211 1110 1234478888888754 2 78999
Q ss_pred EcCcchhhHhhhcCCcCCCCCCeEEEEeCC-cceeeccCCCCC-CCCCCHHHHHHHHHHHHcCcc
Q 020623 184 VGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTVIGSESI-DEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 184 vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~-~kY~~~~~~~~~-~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
||.++-++..+.|++ ...|.+++..|. +.-.. .+..+. +-...+++|.+|+++.-+=..
T Consensus 110 Vd~~e~p~~Fq~l~l---n~~P~l~~f~P~~~n~~~-s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 110 VDYDESPQVFQQLNL---NNVPHLVLFSPAKGNKKR-SDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred EeccccHHHHHHhcc---cCCCeEEEeCCCcccccc-CccchhhhcchhHHHHHHHHHHhhhhee
Confidence 999988888999999 479999999873 21111 111111 123458999999998754333
No 161
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=86.98 E-value=5.4 Score=29.77 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--CeEEEEEcCcch-----------------------hhHhhhcCCcC
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQF-----------------------ADFADTFEANK 200 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~l~F~~vd~~~~-----------------------~~~~~~~gl~~ 200 (323)
++++++.|... .-..-+.....|.++.+++. ++.++.++.+.. ..+.+.||+
T Consensus 19 ~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (116)
T cd02966 19 GKVVLVNFWAS-WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV-- 95 (116)
T ss_pred CCEEEEEeecc-cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc--
Confidence 45665555542 11223455567777777773 466665555432 334566777
Q ss_pred CCCCCeEEEEeCCcc
Q 020623 201 KSKLPKMVVWDGNEN 215 (323)
Q Consensus 201 ~~~~P~ivI~~~~~k 215 (323)
...|.++|+|++++
T Consensus 96 -~~~P~~~l~d~~g~ 109 (116)
T cd02966 96 -RGLPTTFLIDRDGR 109 (116)
T ss_pred -CccceEEEECCCCc
Confidence 36899999888763
No 162
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.47 E-value=7.3 Score=39.01 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh---cCCCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVTT 168 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~---~~Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~~ 168 (323)
..|++.+.+++.+....|+|-=.-.++..||..- +-| =..++++....+..-++|+ +.+|+.. +=.--+...+.
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~-~Cp~Cp~~v~~ 137 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSL-SCHNCPDVVQA 137 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcC-CCCCcHHHHHH
Confidence 3589988875434456787732445566665532 333 4556787777777656676 4455542 11123567788
Q ss_pred HHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 169 LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 169 l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.++|..++.+.+-++|...++++++.+++ ...|+++|
T Consensus 138 ~~~~a~~~~~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 175 (517)
T PRK15317 138 LNLMAVLNPNITHTMIDGALFQDEVEARNI---MAVPTVFL 175 (517)
T ss_pred HHHHHHhCCCceEEEEEchhCHhHHHhcCC---cccCEEEE
Confidence 899999888899999999999999999998 58999976
No 163
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=86.37 E-value=7.7 Score=33.59 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=70.7
Q ss_pred HHHHHHHHhhcCCCeeecC-hhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhh
Q 020623 117 EFLEEFIKQNFLPLSVPIN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADT 195 (323)
Q Consensus 117 ~~L~~fI~~~~~Plv~~~t-~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~ 195 (323)
+.-++|+++ ...-+.++. ...+.........++..|+.++ --.-+-+-+.|..+|+.|-+..|+.+++..-+=+...
T Consensus 55 ~kr~~~~~~-GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~-f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~k 132 (211)
T KOG1672|consen 55 EKRKEWLSK-GHGEYEEVASEKDFFEEVKKSEKVVCHFYRPE-FFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTK 132 (211)
T ss_pred HHHHHHHHc-CCceEEEeccHHHHHHHhhcCceEEEEEEcCC-CcceehHHHHHHHHHHhcccceEEEEecccCceeeee
Confidence 345556554 344555555 3344444333345655566532 1111233379999999999999999999865556788
Q ss_pred cCCcCCCCCCeEEEEeCCc--ceeeccCCCCC--CCCCCHHHHHHHH
Q 020623 196 FEANKKSKLPKMVVWDGNE--NYLTVIGSESI--DEEDQGSQISRFL 238 (323)
Q Consensus 196 ~gl~~~~~~P~ivI~~~~~--kY~~~~~~~~~--~~~~t~~~I~~Fi 238 (323)
|+| .-+|+++++.... -|.. |..++ .++++.+.+..=|
T Consensus 133 L~I---kVLP~v~l~k~g~~~D~iV--GF~dLGnkDdF~te~LE~rL 174 (211)
T KOG1672|consen 133 LNI---KVLPTVALFKNGKTVDYVV--GFTDLGNKDDFTTETLENRL 174 (211)
T ss_pred eee---eEeeeEEEEEcCEEEEEEe--eHhhcCCCCcCcHHHHHHHH
Confidence 888 4789999877542 2322 54444 3567877776644
No 164
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.21 E-value=39 Score=33.82 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=77.4
Q ss_pred CCCeEEEecCCCCCCccccCCCCHHHHHHHHH---hhcCCCeeecChhhHHHhhcCCCcE-EEEEEeCCChhHHHHHHHH
Q 020623 93 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIK---QNFLPLSVPINQDTLNLLKDDKRKI-VLAIVEDETEEKSQKLVTT 168 (323)
Q Consensus 93 ~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~---~~~~Plv~~~t~~~~~~~~~~~~~~-v~~f~~~~~~e~~~~~~~~ 168 (323)
..|++.+++++.+....|+|-=.-.++..||. .-+-| -..++++....+..-++|+ +.+|+.. +=.--+...+.
T Consensus 61 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~-~Cp~Cp~~v~~ 138 (515)
T TIGR03140 61 RKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSL-TCQNCPDVVQA 138 (515)
T ss_pred CCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeC-CCCCCHHHHHH
Confidence 46999887654344567876323334555544 33444 3677888888777656676 4455542 11122567788
Q ss_pred HHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 169 LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 169 l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.++|..++.+..-++|+..|+++++.+++ ...|.++|
T Consensus 139 ~~~~a~~~p~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 176 (515)
T TIGR03140 139 LNQMALLNPNISHTMIDGALFQDEVEALGI---QGVPAVFL 176 (515)
T ss_pred HHHHHHhCCCceEEEEEchhCHHHHHhcCC---cccCEEEE
Confidence 899999999988999999999999999998 58999987
No 165
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=85.51 E-value=3.3 Score=32.22 Aligned_cols=86 Identities=10% Similarity=0.171 Sum_probs=44.5
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCC------h---hHHHHHHHhhcCceeEEeec-----ccchhhHhhcCCC-CC
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLD------E---SVMSNLALKYKKKAWFAVAK-----DFSEDTMVLYDFD-KV 94 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~------~---~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~~-~~ 94 (323)
..|+|.++++++++..... +++| |-.+ . ..|++.+....+.+.++..+ ..+..++.++|+. ..
T Consensus 2 ~~L~t~eql~~i~~~S~~~-~~~i-FKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEK-PVLI-FKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH---S-EEEE-EEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHhcccC-cEEE-EEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 3688999999999883321 4444 3211 1 24555555544334444331 2467788899986 47
Q ss_pred CeEEEecCCCCCCcccc---CCCCHHHHH
Q 020623 95 PALVALQPSYNEHNIFY---GPFDEEFLE 120 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~---g~~~~~~L~ 120 (323)
|.++++++ +..+|+ ...+.+.|+
T Consensus 80 PQ~ili~~---g~~v~~aSH~~It~~~lk 105 (105)
T PF11009_consen 80 PQVILIKN---GKVVWHASHWDITAEALK 105 (105)
T ss_dssp SEEEEEET---TEEEEEEEGGG-SHHHH-
T ss_pred CcEEEEEC---CEEEEECccccCCHHhcC
Confidence 99999985 455554 356666653
No 166
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=84.11 E-value=12 Score=37.53 Aligned_cols=75 Identities=5% Similarity=0.009 Sum_probs=42.9
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcC---cccccccCC--CCCC---CCeeE
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG---RTEQKKVAG--PSIF---GFVNS 262 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~G---kl~~~~kSe--P~~~---g~v~~ 262 (323)
.+...||+ ..+|..+|++++++-...- .+..+.+.|.++|+....- .+++|.+-. +..+ +.=+.
T Consensus 130 ~lak~fgV---~giPTt~IIDkdGkIV~~~-----~G~~~~eeL~a~Ie~~~~~~~~~~~~~~~~~~q~~d~~~~~~~~~ 201 (521)
T PRK14018 130 TLAQSLNI---SVYPSWAIIGKDGDVQRIV-----KGSISEAQALALIRNPNADLGSLKHSYYKPDGQKKDSKIMNTRTI 201 (521)
T ss_pred HHHHHcCC---CCcCeEEEEcCCCeEEEEE-----eCCCCHHHHHHHHHHhhhhhHHhhhhhccccCCccccCCCCccEE
Confidence 45567777 5799999999876432110 2357889999999944421 223343222 2222 22334
Q ss_pred EeccCcceehH
Q 020623 263 LIGIRSVYIIV 273 (323)
Q Consensus 263 vVg~~~~~iv~ 273 (323)
++|--+++-+-
T Consensus 202 ~~agGCFWg~e 212 (521)
T PRK14018 202 YLAGGCFWGLE 212 (521)
T ss_pred EEecCCchhhH
Confidence 55666666665
No 167
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=84.10 E-value=6.7 Score=30.90 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=40.0
Q ss_pred HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchh-hHhhhcCCcCCCCCCeEEEEeCCc
Q 020623 141 LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFA-DFADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 141 ~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~-~~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
.-...++|+++.|... -=..-+.+...+.+.+..... ..|+.++.+... .....|++ .+...|.++++++++
T Consensus 14 ~A~~~~kpVlV~F~a~-WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~~~G 87 (117)
T cd02959 14 EAKDSGKPLMLLIHKT-WCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHcCCcEEEEEeCC-cCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhccc-CCCccceEEEECCCC
Confidence 3344567887767542 112223444555555443322 456666665433 23456777 444599999999754
No 168
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=83.44 E-value=14 Score=33.84 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=57.9
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcc---------hhhHhhhcCCcCCCCCCeEEEEeCC-c
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---------FADFADTFEANKKSKLPKMVVWDGN-E 214 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~---------~~~~~~~~gl~~~~~~P~ivI~~~~-~ 214 (323)
+++.++.|... .-.--......|++++++|.- +.++.+|... ....++.||+ ...|.+++++.+ +
T Consensus 166 ~k~~Lv~F~As-wCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV---~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 166 KKSGLFFFFKS-DCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI---RTVPAVFLADPDPN 241 (271)
T ss_pred CCeEEEEEECC-CCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC---CcCCeEEEEECCCC
Confidence 45666666542 112235666789999999873 5556666532 1245678888 579999999984 5
Q ss_pred ceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 215 NYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 215 kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+..... .+.++.+.|.+.+.....
T Consensus 242 ~v~~v~-----~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIG-----FGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEE-----eCCCCHHHHHHHHHHHhc
Confidence 544321 245788889888887654
No 169
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=83.31 E-value=12 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=12.6
Q ss_pred HhhhcCCcCCCCCCeEEEEeCCc
Q 020623 192 FADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 192 ~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
+.+.|++ ...|.++|+++++
T Consensus 74 l~~~~~i---~~iP~~~lld~~G 93 (95)
T PF13905_consen 74 LLKKYGI---NGIPTLVLLDPDG 93 (95)
T ss_dssp HHHHTT----TSSSEEEEEETTS
T ss_pred HHHHCCC---CcCCEEEEECCCC
Confidence 3445566 4578888888765
No 170
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=82.61 E-value=23 Score=35.83 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=77.6
Q ss_pred HHHhhc-CCCcEEE-EEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc-c
Q 020623 139 LNLLKD-DKRKIVL-AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-N 215 (323)
Q Consensus 139 ~~~~~~-~~~~~v~-~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~-k 215 (323)
+..++. ..+|+.+ +|++. +.+...++.+.|+++|.--..+.+...|...-....+.||+ ...|+++|.+.++ .
T Consensus 357 l~~~~~~l~~~v~l~~~~~~-~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v---~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDG-SNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKI---TKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHhcCCCEEEEEEECC-CchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCC---CcCCEEEEEeCCCcc
Confidence 444443 3568754 55553 33456677788888886555577777676544567788898 4789999986432 1
Q ss_pred --eeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC------CCCCCC--eeEEeccCcceehHHH
Q 020623 216 --YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG------PSIFGF--VNSLIGIRSVYIIVFM 275 (323)
Q Consensus 216 --Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe------P~~~g~--v~~vVg~~~~~iv~~~ 275 (323)
..+. | -.....+..||..+++=.-.+.-.|+ -.+.++ ++++|+.+|.+|--..
T Consensus 433 ~~i~f~-g------~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~ 495 (555)
T TIGR03143 433 TGLKFH-G------VPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVV 495 (555)
T ss_pred cceEEE-e------cCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHH
Confidence 1221 2 23456788999998764433322243 233344 6677899999988433
No 171
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=82.44 E-value=7.1 Score=27.84 Aligned_cols=62 Identities=23% Similarity=0.197 Sum_probs=43.4
Q ss_pred hHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHHHHHHhh
Q 020623 60 SVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~ 126 (323)
..+.+++..+...+.+...+. .+.+++.++++...|++++ . +...+.|..+.+.|.++|...
T Consensus 19 ~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~---g~~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 19 RVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--N---GDVEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred HHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--C---CEEEEecCCCHHHHHHHHHhh
Confidence 466777877766666555532 3566778899888999876 2 224567877889999998753
No 172
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=81.73 E-value=14 Score=26.51 Aligned_cols=63 Identities=22% Similarity=0.420 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 163 QKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
+.+.+.+++++..+. +..-..+..+++.+ ..+|+ ...|+++| | ++-.+. | ...+.+.|.+||+
T Consensus 14 ~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv---~~vPalvI-n--g~~~~~-G-----~~p~~~el~~~l~ 76 (76)
T PF13192_consen 14 PELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGV---MSVPALVI-N--GKVVFV-G-----RVPSKEELKELLE 76 (76)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT----SSSSEEEE-T--TEEEEE-S-----S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCC---CCCCEEEE-C--CEEEEE-e-----cCCCHHHHHHHhC
Confidence 466778888888885 77777888766666 88899 67899965 3 332221 2 1357788888875
No 173
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=81.44 E-value=21 Score=28.37 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=48.5
Q ss_pred ecCChHHHHHHHHhcCCcccEEEEecC-------C--------hhHHHHHHHhhcCceeEEeecc--------cchhhHh
Q 020623 31 ILNSDAEVSDFVENAGTFFPLFIGFGL-------D--------ESVMSNLALKYKKKAWFAVAKD--------FSEDTMV 87 (323)
Q Consensus 31 ~i~s~~~l~~fl~~~~~~~~~vVgf~~-------~--------~~~f~~~A~~~~~~~~F~~~~~--------~~~~~~~ 87 (323)
.+.+.+++.+.+...+.. +++|-|.. + ...+.+++.++.+.+.|..++- .+.++..
T Consensus 5 ~~~~~~~f~~~i~~~~~~-~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~ 83 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGK-PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT 83 (119)
T ss_pred cccCHHHHHHHHHhcCCC-eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh
Confidence 467888888888763211 57777754 2 2478889988876666655431 1346777
Q ss_pred hcCCC-CCCeEEEecC
Q 020623 88 LYDFD-KVPALVALQP 102 (323)
Q Consensus 88 ~~~~~-~~p~ivv~k~ 102 (323)
++++. ..|++++|+.
T Consensus 84 ~~~I~~~iPT~~~~~~ 99 (119)
T cd02952 84 DPKLTTGVPTLLRWKT 99 (119)
T ss_pred ccCcccCCCEEEEEcC
Confidence 88887 8999999965
No 174
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=81.39 E-value=23 Score=27.39 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=37.0
Q ss_pred eEEEEEcCcc--hhhHhhhcCCcCCCCCCeEEEEeC-Ccc--eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 179 LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDG-NEN--YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 179 l~F~~vd~~~--~~~~~~~~gl~~~~~~P~ivI~~~-~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+.+..+|... ...+++.|++ ..+|.++++++ +++ +.. .+..+++.+..-++.+..
T Consensus 53 ~v~~~~d~~~~e~~~~~~~~~~---~~~P~~~~i~~~~g~~l~~~-------~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 53 FIFWQCDIDSSEGQRFLQSYKV---DKYPHIAIIDPRTGEVLKVW-------SGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEEEecCCCccHHHHHHHhCc---cCCCeEEEEeCccCcEeEEE-------cCCCCHHHHHHHHHHHHh
Confidence 6666677753 3457788887 57999999998 553 322 344677777777766654
No 175
>smart00594 UAS UAS domain.
Probab=78.15 E-value=31 Score=27.12 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=35.2
Q ss_pred CeEEEEEcCcch--hhHhhhcCCcCCCCCCeEEEEeCCc---ceeeccCCCCCCCCCCHHHHHHHH
Q 020623 178 ELVFCYVGIKQF--ADFADTFEANKKSKLPKMVVWDGNE---NYLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 178 ~l~F~~vd~~~~--~~~~~~~gl~~~~~~P~ivI~~~~~---kY~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
++.+..+|...- .++++.|++ ..+|.++++++++ .+... + .+.+..+.+.+..++
T Consensus 62 ~fv~~~~dv~~~eg~~l~~~~~~---~~~P~~~~l~~~~g~~~~~~~-~--~~~G~~~~~~l~~~l 121 (122)
T smart00594 62 NFIFWQVDVDTSEGQRVSQFYKL---DSFPYVAIVDPRTGQRVIEWV-G--VVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCChhHHHHHHhcCc---CCCCEEEEEecCCCceeEEEe-c--cccCCCCHHHHHHhh
Confidence 366666776532 356788888 5799999999853 22221 1 124567788877765
No 176
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=75.89 E-value=3 Score=32.62 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=48.7
Q ss_pred eecChhhHHHhhcCCCcEEEEEEeCCChhH---HHHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeE
Q 020623 132 VPINQDTLNLLKDDKRKIVLAIVEDETEEK---SQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 207 (323)
Q Consensus 132 ~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~---~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~i 207 (323)
..++.+++..+...+...++ |+.. +... .....-.|=++.+.+.+ +..++++......+...||+ ...|++
T Consensus 12 ~~vd~~~ld~~l~~~~~~vl-f~~g-Dp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv---~~~PaL 86 (107)
T PF07449_consen 12 PRVDADTLDAFLAAPGDAVL-FFAG-DPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV---RRWPAL 86 (107)
T ss_dssp EEE-CCCHHHHHHCCSCEEE-EESS--TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT----TSSSEE
T ss_pred eeechhhHHHHHhCCCcEEE-EECC-CCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC---ccCCeE
Confidence 34456677777665544444 4442 2322 23444577788899999 88888885544567789999 589999
Q ss_pred EEEeC
Q 020623 208 VVWDG 212 (323)
Q Consensus 208 vI~~~ 212 (323)
++...
T Consensus 87 vf~R~ 91 (107)
T PF07449_consen 87 VFFRD 91 (107)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 98764
No 177
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=75.78 E-value=43 Score=34.14 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=60.6
Q ss_pred ceecCChHHHHHHHHhcC-CcccEEEEecCC--------hh-HH--HHHHHhhcCceeEEeecc-----cchhhHhhcCC
Q 020623 29 VSILNSDAEVSDFVENAG-TFFPLFIGFGLD--------ES-VM--SNLALKYKKKAWFAVAKD-----FSEDTMVLYDF 91 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~-~~~~~vVgf~~~--------~~-~f--~~~A~~~~~~~~F~~~~~-----~~~~~~~~~~~ 91 (323)
...+.|.+++++.++... ...+++|-|..+ +. .| .++.+.+. ++.+..++- ...+++.++++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC
Confidence 566778888887765321 011678887543 11 22 34555555 444443321 12467788999
Q ss_pred CCCCeEEEecCCCCC--CccccCCCCHHHHHHHHHhh
Q 020623 92 DKVPALVALQPSYNE--HNIFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 92 ~~~p~ivv~k~~~~~--~~~y~g~~~~~~L~~fI~~~ 126 (323)
...|++++|++.-+. ...+.|..+.+++.+++++.
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 899999999752222 23456888999999999874
No 178
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=75.06 E-value=7.2 Score=30.47 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=46.5
Q ss_pred CceecCChHHHHHHHHhcCCcccEEEEecCC-------hh---HHHHHHHhhcCceeEEeec-ccchhhHhhcCCCCCCe
Q 020623 28 DVSILNSDAEVSDFVENAGTFFPLFIGFGLD-------ES---VMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFDKVPA 96 (323)
Q Consensus 28 ~v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~-------~~---~f~~~A~~~~~~~~F~~~~-~~~~~~~~~~~~~~~p~ 96 (323)
....++ .+.+++|+...+. .++.|..+ .+ ..-++.+.+......+++. ..+..+..+||+...|+
T Consensus 10 g~~~vd-~~~ld~~l~~~~~---~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 10 GWPRVD-ADTLDAFLAAPGD---AVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp TEEEE--CCCHHHHHHCCSC---EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred CCeeec-hhhHHHHHhCCCc---EEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCe
Confidence 355664 6889999998774 44444221 12 4556776666666665552 34677888999988999
Q ss_pred EEEecC
Q 020623 97 LVALQP 102 (323)
Q Consensus 97 ivv~k~ 102 (323)
++++|.
T Consensus 86 Lvf~R~ 91 (107)
T PF07449_consen 86 LVFFRD 91 (107)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
No 179
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=74.08 E-value=39 Score=34.42 Aligned_cols=91 Identities=9% Similarity=0.155 Sum_probs=55.0
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHH-H--HHHHHhCCCeEEEEEcCcch----hhHhhhcCCcCCCCCCeEEEEeCCccee
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTT-L--KAAASANRELVFCYVGIKQF----ADFADTFEANKKSKLPKMVVWDGNENYL 217 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~-l--~~~A~~~~~l~F~~vd~~~~----~~~~~~~gl~~~~~~P~ivI~~~~~kY~ 217 (323)
.++|+++-|..+- =..=+.+... + .+++++++++.++.+|.++. ..+++.||+ ...|.+++.+.+++-.
T Consensus 473 ~gK~VlVdF~A~W-C~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v---~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 473 KGKPVMLDLYADW-CVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV---LGLPTILFFDAQGQEI 548 (571)
T ss_pred cCCcEEEEEECCc-CHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC---CCCCEEEEECCCCCCc
Confidence 3578777676421 0111222222 1 35556666788888998643 356788998 5689999998765321
Q ss_pred eccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 218 TVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 218 ~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
.. ....+..+.+.+.+++++.+
T Consensus 549 ~~---~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 549 PD---ARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred cc---ccccCCCCHHHHHHHHHHhc
Confidence 00 00134578889999998764
No 180
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=72.45 E-value=46 Score=29.10 Aligned_cols=115 Identities=10% Similarity=0.136 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCCeeecChhhH-HHhhcCCCcEEE-EEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhh
Q 020623 117 EFLEEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVL-AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFAD 194 (323)
Q Consensus 117 ~~L~~fI~~~~~Plv~~~t~~~~-~~~~~~~~~~v~-~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~ 194 (323)
.++++-...+++..|.++|...| ......+.-+.+ +-+.......-.-+...|..+|.+|+++.|+-+-+..- +.
T Consensus 79 ~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---Ip 155 (240)
T KOG3170|consen 79 AEWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IP 155 (240)
T ss_pred HHHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cC
Confidence 45666677889999999996544 455544433322 11121122222334478999999999999998876531 22
Q ss_pred hcCCcCCCCCCeEEEEeCC---cceeeccCCCCC-CCCCCHHHHHHHHHH
Q 020623 195 TFEANKKSKLPKMVVWDGN---ENYLTVIGSESI-DEEDQGSQISRFLEG 240 (323)
Q Consensus 195 ~~gl~~~~~~P~ivI~~~~---~kY~~~~~~~~~-~~~~t~~~I~~Fi~~ 240 (323)
.| ....+|.+.|.... +.|.-+ ..+ ....|.+.+..|+-+
T Consensus 156 NY---Pe~nlPTl~VY~~G~lk~q~igl---l~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 156 NY---PESNLPTLLVYHHGALKKQMIGL---LELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred CC---cccCCCeEEEeecchHHhheehh---hhhcCCcCCHHHHHHHHHh
Confidence 22 45779999886642 233211 112 235788888888743
No 181
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=70.75 E-value=28 Score=26.42 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHH---HHHHhCCC-eEEEEEcCcch--------------------hhHhhhcCCcC
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLK---AAASANRE-LVFCYVGIKQF--------------------ADFADTFEANK 200 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~---~~A~~~~~-l~F~~vd~~~~--------------------~~~~~~~gl~~ 200 (323)
.++++++.|.+. +=.-=..+.+.+. ++++..++ +.++.++...- ..++..+|+
T Consensus 4 ~~k~~v~~F~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-- 80 (112)
T PF13098_consen 4 NGKPIVVVFTDP-WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV-- 80 (112)
T ss_dssp TSSEEEEEEE-T-T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC--
Confidence 457787777653 1111123333333 45555554 66666666432 135678888
Q ss_pred CCCCCeEEEEeCCcc-eeeccCCCCCCCCCCHHHHHHHH
Q 020623 201 KSKLPKMVVWDGNEN-YLTVIGSESIDEEDQGSQISRFL 238 (323)
Q Consensus 201 ~~~~P~ivI~~~~~k-Y~~~~~~~~~~~~~t~~~I~~Fi 238 (323)
...|.+++.|.+++ .....| -.+.+++.+++
T Consensus 81 -~gtPt~~~~d~~G~~v~~~~G------~~~~~~l~~~L 112 (112)
T PF13098_consen 81 -NGTPTIVFLDKDGKIVYRIPG------YLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEES------S--HHHHHHHH
T ss_pred -CccCEEEEEcCCCCEEEEecC------CCCHHHHHhhC
Confidence 56899999997653 322223 35677777654
No 182
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=67.64 E-value=19 Score=25.85 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=39.4
Q ss_pred hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCCCCCCccccCCC-CHHHHHHHHH
Q 020623 60 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPF-DEEFLEEFIK 124 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~-~~~~L~~fI~ 124 (323)
+.+++++.++...+.|..++ +.+.+.++++...|++++ + +..++.|.. +.+.|++|++
T Consensus 18 ~~~~~~~~e~~~~~~~~~v~--~~~~a~~~~v~~vPti~i--~---G~~~~~G~~~~~~~l~~~l~ 76 (76)
T TIGR00412 18 KNVKKAVEELGIDAEFEKVT--DMNEILEAGVTATPGVAV--D---GELVIMGKIPSKEEIKEILK 76 (76)
T ss_pred HHHHHHHHHcCCCeEEEEeC--CHHHHHHcCCCcCCEEEE--C---CEEEEEeccCCHHHHHHHhC
Confidence 46788888887667776553 344566788888999998 2 233366642 5578888863
No 183
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=67.21 E-value=58 Score=25.35 Aligned_cols=90 Identities=8% Similarity=0.224 Sum_probs=49.7
Q ss_pred hhhHHHhhcC--CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC-eEEEEEcCcchh----hHhhhcCCcCCCCCCeEE
Q 020623 136 QDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFA----DFADTFEANKKSKLPKMV 208 (323)
Q Consensus 136 ~~~~~~~~~~--~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~-l~F~~vd~~~~~----~~~~~~gl~~~~~~P~iv 208 (323)
.+.+..+... .+|+ ++|=...+=.-+...++.|+..+....+ +.+.++|.-++. .+++.||+. -+-|+++
T Consensus 7 ~eql~~i~~~S~~~~~-~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~--HeSPQ~i 83 (105)
T PF11009_consen 7 EEQLEEILEESKEKPV-LIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVK--HESPQVI 83 (105)
T ss_dssp HHHHHHHHHH---SEE-EEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------SSEEE
T ss_pred HHHHHHHHHhcccCcE-EEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCC--cCCCcEE
Confidence 3445555432 3454 4454422223345666888888888877 999999997763 467899994 7789999
Q ss_pred EEeCCc-ceeeccCCCCCCCCCCHHHH
Q 020623 209 VWDGNE-NYLTVIGSESIDEEDQGSQI 234 (323)
Q Consensus 209 I~~~~~-kY~~~~~~~~~~~~~t~~~I 234 (323)
++...+ .|.- . -..+|.++|
T Consensus 84 li~~g~~v~~a-S-----H~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHA-S-----HWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEE-E-----GGG-SHHHH
T ss_pred EEECCEEEEEC-c-----cccCCHHhc
Confidence 887654 4432 1 124666665
No 184
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=66.15 E-value=56 Score=26.85 Aligned_cols=42 Identities=19% Similarity=0.438 Sum_probs=30.7
Q ss_pred hhhHhhcCCCCCCeEEEecCCCCC-CccccCCCCHHHHHHHHHh
Q 020623 83 EDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFLEEFIKQ 125 (323)
Q Consensus 83 ~~~~~~~~~~~~p~ivv~k~~~~~-~~~y~g~~~~~~L~~fI~~ 125 (323)
.++...+++...|+++++.+. +. ...+.|..+.++|.+++..
T Consensus 128 ~~~~~~~~v~~~P~~~lid~~-g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 128 RQVIDAYGVGPLPTTFLIDKD-GKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred chHHHHcCCCCcCeEEEECCC-CcEEEEEeCCCCHHHHHHHHHH
Confidence 456678888888998888752 22 2246788888999999875
No 185
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=65.26 E-value=46 Score=26.09 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=16.5
Q ss_pred HhhhcCCcCCCCCCeEEEEeCCcce
Q 020623 192 FADTFEANKKSKLPKMVVWDGNENY 216 (323)
Q Consensus 192 ~~~~~gl~~~~~~P~ivI~~~~~kY 216 (323)
+.+.||+ ...|.+++++.+++-
T Consensus 91 ~~~~~~v---~~~P~~~lid~~G~i 112 (131)
T cd03009 91 LNRTFKI---EGIPTLIILDADGEV 112 (131)
T ss_pred HHHHcCC---CCCCEEEEECCCCCE
Confidence 4456777 568999999987653
No 186
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=65.01 E-value=48 Score=23.63 Aligned_cols=41 Identities=17% Similarity=-0.016 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEEcCcchhhHhhhcCCcCCCCCCeEEE
Q 020623 163 QKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~-l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI 209 (323)
+.+...++++++++.. +.|+.+|. ...+..+|+ ...|++++
T Consensus 14 ~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v---~~vPti~i 55 (76)
T TIGR00412 14 QMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV---TATPGVAV 55 (76)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC---CcCCEEEE
Confidence 5666789999999876 88888872 223556788 67899988
No 187
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=61.86 E-value=42 Score=30.70 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=50.0
Q ss_pred cEEEEecCC--------hhHHHHHHHhhcCceeEEeeccc----------chhhHhhcCCCCCCeEEEecCCCCC-Cccc
Q 020623 50 PLFIGFGLD--------ESVMSNLALKYKKKAWFAVAKDF----------SEDTMVLYDFDKVPALVALQPSYNE-HNIF 110 (323)
Q Consensus 50 ~~vVgf~~~--------~~~f~~~A~~~~~~~~F~~~~~~----------~~~~~~~~~~~~~p~ivv~k~~~~~-~~~y 110 (323)
+++|-|+.. ...+.+++.++...+.+...++. +..++.++|+...|+++++++..+. ..+.
T Consensus 168 ~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~ 247 (271)
T TIGR02740 168 SGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIG 247 (271)
T ss_pred eEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEE
Confidence 456666542 24778888887633332222211 2456778999899999999862122 2245
Q ss_pred cCCCCHHHHHHHHHhhc
Q 020623 111 YGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 111 ~g~~~~~~L~~fI~~~~ 127 (323)
.|..+.++|.++|..-.
T Consensus 248 ~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 248 FGVMSADELVDRILLAA 264 (271)
T ss_pred eCCCCHHHHHHHHHHHh
Confidence 58889999999987654
No 188
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.73 E-value=42 Score=30.42 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHH
Q 020623 163 QKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 242 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~ 242 (323)
+.+...+..+|.+|++.+|+.||.++-...+..+|+ ..-|.++..-...|--...| -++..|++-|..|.
T Consensus 37 k~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV---~amPTFiff~ng~kid~~qG-------Ad~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 37 KRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGV---NAMPTFIFFRNGVKIDQIQG-------ADASGLEEKVAKYA 106 (288)
T ss_pred HhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCc---ccCceEEEEecCeEeeeecC-------CCHHHHHHHHHHHh
Confidence 445579999999999999999999877777888999 36788887664433333333 46677888777776
Q ss_pred cC
Q 020623 243 EG 244 (323)
Q Consensus 243 ~G 244 (323)
+.
T Consensus 107 st 108 (288)
T KOG0908|consen 107 ST 108 (288)
T ss_pred cc
Confidence 53
No 189
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=59.45 E-value=78 Score=25.40 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCCCeeecChhhHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhh-h
Q 020623 117 EFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFAD-T 195 (323)
Q Consensus 117 ~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~-~ 195 (323)
+.+.+|.+... ++.+....+....+++-++++..+==.+....+..|.++|+..+++.+-++.-++....++ +
T Consensus 17 ~~~~~~~~~~~------l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~ 90 (129)
T PF14595_consen 17 ERMNRIYKTFQ------LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQY 90 (129)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTT
T ss_pred HHHHHHHHccC------CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHH
Confidence 44555555544 4555555554444555444433111134567778999999998875555554444445554 3
Q ss_pred cCCcCCCCCCeEEEEeCC
Q 020623 196 FEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 196 ~gl~~~~~~P~ivI~~~~ 213 (323)
+.. .....|.+++.|.+
T Consensus 91 lt~-g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 91 LTN-GGRSIPTFIFLDKD 107 (129)
T ss_dssp TT--SS--SSEEEEE-TT
T ss_pred HhC-CCeecCEEEEEcCC
Confidence 332 44789999999875
No 190
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=59.42 E-value=1e+02 Score=25.50 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=35.4
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcc--eeeccCCCCC---CCCCCHHHHHHHHHHHHcCccccc
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNEN--YLTVIGSESI---DEEDQGSQISRFLEGYREGRTEQK 249 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~k--Y~~~~~~~~~---~~~~t~~~I~~Fi~~~~~Gkl~~~ 249 (323)
.+...||+ ...|.++|+|++++ |....+ ++. ....+.+.+.+-|+..++|+-.++
T Consensus 100 ~~~~~~~v---~~~P~~~lid~~G~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 159 (171)
T cd02969 100 EVAKAYGA---ACTPDFFLFDPDGKLVYRGRID-DSRPGNDPPVTGRDLRAALDALLAGKPVPV 159 (171)
T ss_pred HHHHHcCC---CcCCcEEEECCCCeEEEeeccc-CCcccccccccHHHHHHHHHHHHcCCCCCc
Confidence 34456677 45799999998763 332111 111 124577889999999999876553
No 191
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=58.56 E-value=89 Score=24.61 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=49.5
Q ss_pred HhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhC--CC-eEEEEEcCcchh-----------hHhhhcCCcCCCCCCe
Q 020623 141 LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RE-LVFCYVGIKQFA-----------DFADTFEANKKSKLPK 206 (323)
Q Consensus 141 ~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~--~~-l~F~~vd~~~~~-----------~~~~~~gl~~~~~~P~ 206 (323)
.+.-..|++++ |.+..+.....+..+.|++..... |+ +.|..++..... .+...|++ .... -.
T Consensus 5 ~~~w~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~-~~~~-f~ 81 (118)
T PF13778_consen 5 QFRWKNRLLVV-FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRI-PPGG-FT 81 (118)
T ss_pred HhcCcCceEEE-ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCC-CCCc-eE
Confidence 34444566543 554323334556667777644444 45 555555543222 45567888 4444 45
Q ss_pred EEEEeCCc--ceeeccCCCCCCCCCCHHHHHHHHHHH
Q 020623 207 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGY 241 (323)
Q Consensus 207 ivI~~~~~--kY~~~~~~~~~~~~~t~~~I~~Fi~~~ 241 (323)
++++..++ |-.. ...++.+.|-+.|+.+
T Consensus 82 ~vLiGKDG~vK~r~-------~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 82 VVLIGKDGGVKLRW-------PEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEEeCCCcEEEec-------CCCCCHHHHHHHHhCC
Confidence 55566554 3332 2357888998888753
No 192
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=58.42 E-value=1.1e+02 Score=27.86 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCCC-eEEEEEcCcch---------hhHhhhcCCcCCCCCCeEEEEeCC-cceeeccCCCCCCCCCC
Q 020623 162 SQKLVTTLKAAASANRE-LVFCYVGIKQF---------ADFADTFEANKKSKLPKMVVWDGN-ENYLTVIGSESIDEEDQ 230 (323)
Q Consensus 162 ~~~~~~~l~~~A~~~~~-l~F~~vd~~~~---------~~~~~~~gl~~~~~~P~ivI~~~~-~kY~~~~~~~~~~~~~t 230 (323)
-.++...|+.+|++|.= +..+.+|+.-. ...++.||+ ...|++++++++ +++.+.. -+-++
T Consensus 165 C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~Pal~Lv~~~t~~~~pv~-----~G~iS 236 (256)
T TIGR02739 165 SQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV---KYFPALYLVNPKSQKMSPLA-----YGFIS 236 (256)
T ss_pred hHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC---ccCceEEEEECCCCcEEEEe-----eccCC
Confidence 35677899999999974 77777887622 224567888 579999999986 5676652 23456
Q ss_pred HHHHHHHH
Q 020623 231 GSQISRFL 238 (323)
Q Consensus 231 ~~~I~~Fi 238 (323)
.+.|.+=+
T Consensus 237 ~deL~~Ri 244 (256)
T TIGR02739 237 QDELKERI 244 (256)
T ss_pred HHHHHHHH
Confidence 66654433
No 193
>PF13728 TraF: F plasmid transfer operon protein
Probab=57.17 E-value=96 Score=27.25 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhCCC-eEEEEEcCc---ch------hhHhhhcCCcCCCCCCeEEEEeCCc-ceeeccCCCCCCCCCC
Q 020623 162 SQKLVTTLKAAASANRE-LVFCYVGIK---QF------ADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSESIDEEDQ 230 (323)
Q Consensus 162 ~~~~~~~l~~~A~~~~~-l~F~~vd~~---~~------~~~~~~~gl~~~~~~P~ivI~~~~~-kY~~~~~~~~~~~~~t 230 (323)
-+.....|+.+|++|.= +..+.+|+. .+ ...++.||+ ...|++++++++. ++.+.. -+-++
T Consensus 135 C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v---~~~Pal~Lv~~~~~~~~pv~-----~G~~s 206 (215)
T PF13728_consen 135 CQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV---KVTPALFLVNPNTKKWYPVS-----QGFMS 206 (215)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC---CcCCEEEEEECCCCeEEEEe-----eecCC
Confidence 35677899999999952 666666653 12 345677899 5899999999864 666652 23355
Q ss_pred HHHHH
Q 020623 231 GSQIS 235 (323)
Q Consensus 231 ~~~I~ 235 (323)
.+.|.
T Consensus 207 ~~~L~ 211 (215)
T PF13728_consen 207 LDELE 211 (215)
T ss_pred HHHHH
Confidence 55554
No 194
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=56.86 E-value=82 Score=24.42 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=14.5
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCc
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
.++..||+ ..+|..+++|.++
T Consensus 91 ~~~~~~~v---~~~P~~~~ld~~G 111 (127)
T cd03010 91 RVGIDLGV---YGVPETFLIDGDG 111 (127)
T ss_pred hHHHhcCC---CCCCeEEEECCCc
Confidence 34455666 4689888888766
No 195
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=56.24 E-value=1e+02 Score=31.34 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=63.5
Q ss_pred eecCChHHHHHHHHhcCCcccEEEEecCC--------h-hHHH--HHHHhhcCceeE--Eeecc--cchhhHhhcCCCCC
Q 020623 30 SILNSDAEVSDFVENAGTFFPLFIGFGLD--------E-SVMS--NLALKYKKKAWF--AVAKD--FSEDTMVLYDFDKV 94 (323)
Q Consensus 30 ~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~-~~f~--~~A~~~~~~~~F--~~~~~--~~~~~~~~~~~~~~ 94 (323)
..+.+.++++..+.++... |+++-|..+ + -.|. .++.++.+-... -++++ -..++.+++++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~-pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAK-PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCC-cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 4455666999988877642 789988653 1 1332 233344433333 23322 13445678888788
Q ss_pred CeEEEecCCCCCCccccCCCCHHHHHHHHHhhc
Q 020623 95 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQNF 127 (323)
Q Consensus 95 p~ivv~k~~~~~~~~y~g~~~~~~L~~fI~~~~ 127 (323)
|++++|.+..++.....|-.+.+.+.+|+++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999999976566666778889999999998653
No 196
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.39 E-value=1.4e+02 Score=27.98 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=67.3
Q ss_pred hcCCCceecCChHHHHHHHHhcCCcccEEEE-ecCC------------hhHHHHHHHhhcCc--------eeEEeec-cc
Q 020623 24 FVAPDVSILNSDAEVSDFVENAGTFFPLFIG-FGLD------------ESVMSNLALKYKKK--------AWFAVAK-DF 81 (323)
Q Consensus 24 ~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVg-f~~~------------~~~f~~~A~~~~~~--------~~F~~~~-~~ 81 (323)
.....|..++ .+.+..|+....-+ ..+|. |+.. .++|.-+|..++.+ .+|..++ +-
T Consensus 37 ts~~~VI~~n-~d~~~~~v~~~prN-ys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 37 TSESGVIRMN-DDKFSKFVRPPPRN-YSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred cCCCCeEEec-CcchhhhccCCCCC-eEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 3445688885 58999999865543 34444 4321 24677788877542 4666553 23
Q ss_pred chhhHhhcCCCCCCeEEEecCCCC---CCcccc-C--CCCHHHHHHHHHhhcCCCe
Q 020623 82 SEDTMVLYDFDKVPALVALQPSYN---EHNIFY-G--PFDEEFLEEFIKQNFLPLS 131 (323)
Q Consensus 82 ~~~~~~~~~~~~~p~ivv~k~~~~---~~~~y~-g--~~~~~~L~~fI~~~~~Plv 131 (323)
++++.+.+++...|.+++|.|... +...++ + .++.|.+-+|+.+..-=.+
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 667777888888999999976432 222333 1 2458899999987654333
No 197
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=52.98 E-value=1e+02 Score=24.20 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=15.0
Q ss_pred hhhcCCcCCCCCCeEEEEeCCcc
Q 020623 193 ADTFEANKKSKLPKMVVWDGNEN 215 (323)
Q Consensus 193 ~~~~gl~~~~~~P~ivI~~~~~k 215 (323)
.+.||+ ...|.++|++.+++
T Consensus 92 ~~~~~v---~~iPt~~lid~~G~ 111 (132)
T cd02964 92 EKQFKV---EGIPTLVVLKPDGD 111 (132)
T ss_pred HHHcCC---CCCCEEEEECCCCC
Confidence 345777 56899999998764
No 198
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=52.79 E-value=1.5e+02 Score=26.80 Aligned_cols=74 Identities=7% Similarity=0.012 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEEcCcc---hh------hHhhhcCCcCCCCCCeEEEEeCC-cceeeccCCCCCCCCCCH
Q 020623 163 QKLVTTLKAAASANRE-LVFCYVGIKQ---FA------DFADTFEANKKSKLPKMVVWDGN-ENYLTVIGSESIDEEDQG 231 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~-l~F~~vd~~~---~~------~~~~~~gl~~~~~~P~ivI~~~~-~kY~~~~~~~~~~~~~t~ 231 (323)
.++...|+.+|++|.= +..+.+|+.- ++ ..++.+|+ ...|++++++++ +++.+.. -+-++.
T Consensus 159 ~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~PAl~Lv~~~t~~~~pv~-----~G~iS~ 230 (248)
T PRK13703 159 GQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV---KYFPALMLVDPKSGSVRPLS-----YGFITQ 230 (248)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC---cccceEEEEECCCCcEEEEe-----eccCCH
Confidence 5677899999999974 7778888742 21 23456777 578999999985 5776652 244677
Q ss_pred HHHHHHHHHHHcC
Q 020623 232 SQISRFLEGYREG 244 (323)
Q Consensus 232 ~~I~~Fi~~~~~G 244 (323)
+.|.+=+..+..|
T Consensus 231 deL~~Ri~~v~t~ 243 (248)
T PRK13703 231 DDLAKRFLNVSTD 243 (248)
T ss_pred HHHHHHHHHHHhc
Confidence 7776555555444
No 199
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=51.83 E-value=1.1e+02 Score=23.47 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=35.8
Q ss_pred hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCCCCCCccccCCCCHHHHH
Q 020623 60 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 120 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g~~~~~~L~ 120 (323)
+...+.++++.-. |....+.+.+++..+++...|+++++.+. +....+.|-.+.+.|.
T Consensus 62 ~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~~~P~~~vid~~-gi~~~~~g~~~~~~~~ 119 (123)
T cd03011 62 GAVARFMQKKGYG--FPVINDPDGVISARWGVSVTPAIVIVDPG-GIVFVTTGVTSEWGLR 119 (123)
T ss_pred HHHHHHHHHcCCC--ccEEECCCcHHHHhCCCCcccEEEEEcCC-CeEEEEeccCCHHHHH
Confidence 3445556555433 33232234568888999889999999863 3333455767777764
No 200
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=50.84 E-value=1.1e+02 Score=23.37 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=16.6
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCc
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~ 214 (323)
.+...|++ ...|.++|++.++
T Consensus 84 ~~~~~~~i---~~~P~~~vid~~g 104 (123)
T cd03011 84 VISARWGV---SVTPAIVIVDPGG 104 (123)
T ss_pred HHHHhCCC---CcccEEEEEcCCC
Confidence 46677888 5689999999876
No 201
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=47.79 E-value=68 Score=22.80 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEecCCCCCCccccC-CCCHHHHHHHHH
Q 020623 61 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIK 124 (323)
Q Consensus 61 ~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~k~~~~~~~~y~g-~~~~~~L~~fI~ 124 (323)
...+++..+. ...-+.+..+.+-..+||+...|++++ ++...|.| --+.++|++||+
T Consensus 19 ~~~~~~~~~~--i~~ei~~~~~~~~~~~ygv~~vPalvI-----ng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 19 LLKEAAEELG--IEVEIIDIEDFEEIEKYGVMSVPALVI-----NGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHHHHHHTT--EEEEEEETTTHHHHHHTT-SSSSEEEE-----TTEEEEESS--HHHHHHHHHH
T ss_pred HHHHHHHhcC--CeEEEEEccCHHHHHHcCCCCCCEEEE-----CCEEEEEecCCCHHHHHHHhC
Confidence 3445565553 333333222222337899988999977 35667888 457889999985
No 202
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=46.69 E-value=1.1e+02 Score=25.56 Aligned_cols=79 Identities=14% Similarity=0.262 Sum_probs=44.4
Q ss_pred hcCCCeeecChh---hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcC
Q 020623 126 NFLPLSVPINQD---TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANK 200 (323)
Q Consensus 126 ~~~Plv~~~t~~---~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~ 200 (323)
+.-|.+..||+. -+..+.+.+.|+-++|++.+..+ +++..-+ ..+.+ +..-.-|. .-+++...|++
T Consensus 43 ~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~--~~~~~y~----~~~~~~W~~iPf~d~-~~~~l~~ky~v-- 113 (157)
T KOG2501|consen 43 HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDE--ESLDEYM----LEHHGDWLAIPFGDD-LIQKLSEKYEV-- 113 (157)
T ss_pred EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCH--HHHHHHH----HhcCCCeEEecCCCH-HHHHHHHhccc--
Confidence 556778888874 34445555678888888753322 2222222 22332 22111111 12356677888
Q ss_pred CCCCCeEEEEeCCc
Q 020623 201 KSKLPKMVVWDGNE 214 (323)
Q Consensus 201 ~~~~P~ivI~~~~~ 214 (323)
...|+++|+++++
T Consensus 114 -~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 114 -KGIPALVILKPDG 126 (157)
T ss_pred -CcCceeEEecCCC
Confidence 5789999999875
No 203
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=45.58 E-value=45 Score=24.17 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCc---ceeeccCCCCCCCCCCHHHHHHHHH
Q 020623 164 KLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE---NYLTVIGSESIDEEDQGSQISRFLE 239 (323)
Q Consensus 164 ~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~---kY~~~~~~~~~~~~~t~~~I~~Fi~ 239 (323)
+....|+.++...+ +..-.+|...-+.+.+.||. ..|.+.+.+..+ .... ...++.+.|.+|++
T Consensus 15 ~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~----~IPVl~~~~~~~~~~~~~~-------~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 15 EAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY----RIPVLHIDGIRQFKEQEEL-------KWRFDEEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT----STSEEEETT-GGGCTSEEE-------ESSB-HHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC----CCCEEEEcCccccccccee-------CCCCCHHHHHHHhC
Confidence 44455655444444 88888999866677888877 488877655321 1111 12478899999985
No 204
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=44.53 E-value=2e+02 Score=24.45 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=32.9
Q ss_pred hHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCcc
Q 020623 191 DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 191 ~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
.+...||+ ...|..+++|.+++.... + ..-+.+.+.+.++....|..
T Consensus 137 ~i~~~y~v---~~~P~~~lID~~G~I~~~-g-----~~~~~~~le~ll~~l~~~~~ 183 (189)
T TIGR02661 137 EIGMAFQV---GKIPYGVLLDQDGKIRAK-G-----LTNTREHLESLLEADREGFA 183 (189)
T ss_pred HHHHhccC---CccceEEEECCCCeEEEc-c-----CCCCHHHHHHHHHHHHcCcc
Confidence 44566777 468999999988754432 2 12366889999998887754
No 205
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=42.82 E-value=74 Score=26.57 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=34.2
Q ss_pred EEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 182 CYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 182 ~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
+..|.. ..+...||+ ...|..+++|.+++ |.. .+..+.+.+.++++.++.
T Consensus 121 v~~D~~--~~~~~~~~v---~~~P~~~~id~~G~i~~~~-------~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 121 ILIDPN--GKLGLDLGV---YGAPETFLVDGNGVILYRH-------AGPLNNEVWTEGFLPAME 172 (173)
T ss_pred EEECCC--CchHHhcCC---eeCCeEEEEcCCceEEEEE-------eccCCHHHHHHHHHHHhh
Confidence 344543 355667887 45899999998764 433 234788999999998873
No 206
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=42.79 E-value=1.6e+02 Score=26.18 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=57.8
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEE-ecCCh-------hHHHHHHHhhcCceeEEeecccchhhHhhcCCCCCCeEEEe
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIG-FGLDE-------SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVAL 100 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVg-f~~~~-------~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~~~~p~ivv~ 100 (323)
|.++++.+++-+-+...-....++|- |.+.. ....-+|..|- .+.|-.+++....+..++.....|++++|
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~~gas~~F~~n~lP~LliY 218 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSNTGASDRFSLNVLPTLLIY 218 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeeccccchhhhcccCCceEEEe
Confidence 88899999887777665322123333 32221 23445676664 45565554333334445555568999999
Q ss_pred cCCCC-CCc-----cccCCCCHHHHHHHHHhhcC
Q 020623 101 QPSYN-EHN-----IFYGPFDEEFLEEFIKQNFL 128 (323)
Q Consensus 101 k~~~~-~~~-----~y~g~~~~~~L~~fI~~~~~ 128 (323)
+.+.- ..+ .+-.+|...+|+.|++...+
T Consensus 219 kgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 219 KGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred eCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 97421 111 12245677889999987654
No 207
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=42.47 E-value=1.8e+02 Score=24.10 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=28.6
Q ss_pred hhhHhhcCCCCCCeEEEecCCCCCCc--cccCCCCHHHHHHHHHhh
Q 020623 83 EDTMVLYDFDKVPALVALQPSYNEHN--IFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 83 ~~~~~~~~~~~~p~ivv~k~~~~~~~--~y~g~~~~~~L~~fI~~~ 126 (323)
..+...|++...|+.+++.+ +.+. .+.|..+.++|++||.+.
T Consensus 127 ~~~~~~~~v~~~P~~~~id~--~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVDG--NGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CchHHhcCCeeCCeEEEEcC--CceEEEEEeccCCHHHHHHHHHHH
Confidence 34556677767787666654 2343 345888899999999865
No 208
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=42.28 E-value=93 Score=23.42 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=6.3
Q ss_pred CCCeEEEEeCCc
Q 020623 203 KLPKMVVWDGNE 214 (323)
Q Consensus 203 ~~P~ivI~~~~~ 214 (323)
..|..+|+|.++
T Consensus 95 ~~P~~~vid~~G 106 (114)
T cd02967 95 KLPYAVLLDEAG 106 (114)
T ss_pred CcCeEEEECCCC
Confidence 345555555544
No 209
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=42.15 E-value=2.1e+02 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=26.2
Q ss_pred hHhhcCCCCCCeEEEecCCCCCCc--cccCCCCHHHHHHHHHhh
Q 020623 85 TMVLYDFDKVPALVALQPSYNEHN--IFYGPFDEEFLEEFIKQN 126 (323)
Q Consensus 85 ~~~~~~~~~~p~ivv~k~~~~~~~--~y~g~~~~~~L~~fI~~~ 126 (323)
+...|++...|+..++.+ +... .+.|+.+.+.|+++|+.-
T Consensus 134 ~~~~~gv~~~P~t~vid~--~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 134 LGLDLGVYGAPETFLIDG--NGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred HHHhcCCCcCCeEEEECC--CceEEEEEecCCCHHHHHHHHHHH
Confidence 344567767787666654 2333 445888888888888753
No 210
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=42.06 E-value=2.3e+02 Score=31.27 Aligned_cols=89 Identities=10% Similarity=0.133 Sum_probs=53.1
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEc-----Ccc----h------------------hhHhhhc
Q 020623 146 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVG-----IKQ----F------------------ADFADTF 196 (323)
Q Consensus 146 ~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd-----~~~----~------------------~~~~~~~ 196 (323)
++++++-|...- =..-......|++++++|++ +.++-+. ... + ..+...|
T Consensus 420 GK~vll~FWAsW-C~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 420 GKVVILDFWTYC-CINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCEEEEEEECCc-ChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 567766666421 12234556788888888875 6666552 210 1 1233455
Q ss_pred CCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 197 EANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 197 gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
++ ...|.++++|.+++....- .++...+.+.++++..+.
T Consensus 499 ~V---~~iPt~ilid~~G~iv~~~-----~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GV---SSWPTFAVVSPNGKLIAQL-----SGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CC---CccceEEEECCCCeEEEEE-----ecccCHHHHHHHHHHHHH
Confidence 66 4689999999876432210 234567888888887754
No 211
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=41.31 E-value=29 Score=26.27 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=25.6
Q ss_pred hhhHhhcCCCCCCeEEEecCCCCC-CccccCCCCHHHHHHHH
Q 020623 83 EDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFDEEFLEEFI 123 (323)
Q Consensus 83 ~~~~~~~~~~~~p~ivv~k~~~~~-~~~y~g~~~~~~L~~fI 123 (323)
.+++..+++...|+++++.. +++ -..+.|-.+.++|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 35677889989999999864 222 22456888888888875
No 212
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=38.44 E-value=97 Score=19.17 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcchhhHhh---hcCCcCCCCCCeEEEEeCC
Q 020623 163 QKLVTTLKAAASANRELVFCYVGIKQFADFAD---TFEANKKSKLPKMVVWDGN 213 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~---~~gl~~~~~~P~ivI~~~~ 213 (323)
......+.+++...+++.+..++.+....... .+++ ...|.+++.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~~~~~~ 63 (69)
T cd01659 13 QALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV---GGVPTLVVFGPG 63 (69)
T ss_pred HhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC---ccccEEEEEeCC
Confidence 34444555553334458888988876654332 4555 678999888754
No 213
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=38.22 E-value=73 Score=28.20 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=62.5
Q ss_pred CCeeecCh-hhHHHhhcCC---CcEEEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCC
Q 020623 129 PLSVPINQ-DTLNLLKDDK---RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKL 204 (323)
Q Consensus 129 Plv~~~t~-~~~~~~~~~~---~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~ 204 (323)
..|.+++. ..|-.-.... ..+++.++.+ ....-+.+-..+.=+|..|+-+.|+-+-.... ...+.|.+ .-+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEd-gi~gcealn~~~~cLAAeyP~vKFckikss~~-gas~~F~~---n~l 212 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYED-GIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT-GASDRFSL---NVL 212 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecC-CCchHHHHhhhHHHhhccCCceeEEEeeeccc-cchhhhcc---cCC
Confidence 46677764 2333322222 2334455543 22334556678999999999999998876522 33455656 578
Q ss_pred CeEEEEeCCc---ceeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC
Q 020623 205 PKMVVWDGNE---NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG 253 (323)
Q Consensus 205 P~ivI~~~~~---kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe 253 (323)
|++.|....+ .|- .--.+|-++|.+|.+..++...
T Consensus 213 P~LliYkgGeLIgNFv--------------~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 213 PTLLIYKGGELIGNFV--------------SVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred ceEEEeeCCchhHHHH--------------HHHHHHhhhhhhhhHHHHHHHc
Confidence 9999877532 221 1223566777777777776443
No 214
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=36.97 E-value=1.4e+02 Score=25.13 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=35.8
Q ss_pred EEEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCcc
Q 020623 182 CYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGRT 246 (323)
Q Consensus 182 ~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl 246 (323)
++.|.. ..+...||+ ...|..+++|.+++ |.. .+.++.+.+.+.++.++...+
T Consensus 126 ~~~D~~--~~~~~~~gv---~~~P~t~vid~~G~i~~~~-------~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 126 SLFDGD--GMLGLDLGV---YGAPETFLIDGNGIIRYRH-------AGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred EEEcCC--ccHHHhcCC---CcCCeEEEECCCceEEEEE-------ecCCCHHHHHHHHHHHHHHHH
Confidence 345543 234556787 46799999998774 333 245788899999998886543
No 215
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.28 E-value=41 Score=29.85 Aligned_cols=50 Identities=20% Similarity=0.398 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCc-C--CCCCCeEEEEeCC
Q 020623 164 KLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEAN-K--KSKLPKMVVWDGN 213 (323)
Q Consensus 164 ~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~-~--~~~~P~ivI~~~~ 213 (323)
..-..+.++..+|.. +.|..+|...|++....|+++ . ..++|.+++....
T Consensus 161 ~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~g 215 (265)
T KOG0914|consen 161 RFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKG 215 (265)
T ss_pred ccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccc
Confidence 344578888889874 999999999999999999885 2 3789999987753
No 216
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=32.62 E-value=1.4e+02 Score=21.49 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=39.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHhCCC--eEEEEEcCcchhhHhhhcCCcCCCCCCeEE
Q 020623 150 VLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 208 (323)
Q Consensus 150 v~~f~~~~~~e~~~~~~~~l~~~A~~~~~--l~F~~vd~~~~~~~~~~~gl~~~~~~P~iv 208 (323)
..+|+...+ ..+...++.++++.+.+.+ ..+=.+|..+.+..++...+ --.|+++
T Consensus 4 L~Lyv~g~t-p~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~i---vAtPtLv 60 (72)
T cd02978 4 LRLYVAGRT-PKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKI---VATPTLV 60 (72)
T ss_pred EEEEECCCC-chHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCE---EEechhh
Confidence 345666432 3466777888888888754 88888999888888888777 3456654
No 217
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=31.71 E-value=1.3e+02 Score=25.20 Aligned_cols=52 Identities=6% Similarity=0.105 Sum_probs=34.5
Q ss_pred EEcCcchhhHhhhcCCcCCCCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHc
Q 020623 183 YVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 243 (323)
Q Consensus 183 ~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~ 243 (323)
++|.+- -.....+|. ..--+|+++|.+++-.+.. ++.++.+++.+++.-+..
T Consensus 108 vlD~~G--~~~~aW~L~--~~~SaiiVlDK~G~V~F~k-----~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 108 VLDSNG--VVRKAWQLQ--EESSAIIVLDKQGKVQFVK-----EGALSPAEVQQVIALLKK 159 (160)
T ss_pred EEcCCC--ceeccccCC--CCCceEEEEcCCccEEEEE-----CCCCCHHHHHHHHHHHhc
Confidence 556542 234556673 3445788999887544433 568999999999987654
No 218
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=31.26 E-value=1.1e+02 Score=22.30 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHhcCCCceecCChHHHHHHHHhcCCcccEEEE
Q 020623 11 PRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIG 54 (323)
Q Consensus 11 ~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~~~~~~~~vVg 54 (323)
+|+.-+|.+|+.+++.|. +..+++.++++.++. ++=||
T Consensus 18 ~~NT~EI~~~~~~~M~~~----s~Pe~~~NiL~~D~~--I~ri~ 55 (92)
T PF12976_consen 18 PRNTIEISAWLASQMDPN----SCPEDVTNILEADES--IVRIG 55 (92)
T ss_pred cccHHHHHHHHHhccCCC----CCHHHHHHHHhcccc--ceeee
Confidence 788899999999999987 346888888887764 34455
No 219
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=29.94 E-value=54 Score=22.61 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=23.9
Q ss_pred ccCCCCChHHHHHHHHHhcCCCceecCChHHHHHHHHh
Q 020623 7 EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVEN 44 (323)
Q Consensus 7 eY~G~R~a~~Iv~~l~k~~~p~v~~i~s~~~l~~fl~~ 44 (323)
-.+|+|+.++|++.+.++.+-+...+ .+++..|++.
T Consensus 25 ~~~g~~t~~ei~~~l~~~y~~~~~~~--~~dv~~fl~~ 60 (68)
T PF05402_consen 25 LLDGPRTVEEIVDALAEEYDVDPEEA--EEDVEEFLEQ 60 (68)
T ss_dssp H--SSS-HHHHHHHHHHHTT--HHHH--HHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHcCCCHHHH--HHHHHHHHHH
Confidence 35799999999999999986665545 4677777653
No 220
>PF13728 TraF: F plasmid transfer operon protein
Probab=28.54 E-value=3.8e+02 Score=23.45 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=40.1
Q ss_pred hHHHHHHHhhcCceeEEeecc----------cchhhHhhcCCCCCCeEEEecCCCCCCc-cccCCCCHHHHHH
Q 020623 60 SVMSNLALKYKKKAWFAVAKD----------FSEDTMVLYDFDKVPALVALQPSYNEHN-IFYGPFDEEFLEE 121 (323)
Q Consensus 60 ~~f~~~A~~~~~~~~F~~~~~----------~~~~~~~~~~~~~~p~ivv~k~~~~~~~-~y~g~~~~~~L~~ 121 (323)
..+..+|.+|.-.+.....++ .+..++.++++...|++.+..+...... +-.|-.+.++|.+
T Consensus 140 pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 140 PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELED 212 (215)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHH
Confidence 356778888764443322221 2466788899988999999887433322 3458888877765
No 221
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=26.49 E-value=1.1e+02 Score=27.57 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=27.6
Q ss_pred hHHHhhcCCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCCC
Q 020623 138 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE 178 (323)
Q Consensus 138 ~~~~~~~~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~~ 178 (323)
++-.+...+||+++-|-+.+ =..+..-.+.+++++++|++
T Consensus 94 ~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 94 RILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred eHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhh
Confidence 34556677899988775542 23355566788899999887
No 222
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=26.38 E-value=3e+02 Score=21.18 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=11.3
Q ss_pred hhcCCcCCCCCCeEEEEeCCc
Q 020623 194 DTFEANKKSKLPKMVVWDGNE 214 (323)
Q Consensus 194 ~~~gl~~~~~~P~ivI~~~~~ 214 (323)
..||+ ...|..+|+|.++
T Consensus 99 ~~~~v---~~~P~~~vid~~G 116 (126)
T cd03012 99 RAYGN---QYWPALYLIDPTG 116 (126)
T ss_pred HHhCC---CcCCeEEEECCCC
Confidence 34555 3567887777765
No 223
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=25.63 E-value=1.2e+02 Score=22.74 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHhCCC-eEEEEEcCcchhhHhhhcCC
Q 020623 171 AAASANRE-LVFCYVGIKQFADFADTFEA 198 (323)
Q Consensus 171 ~~A~~~~~-l~F~~vd~~~~~~~~~~~gl 198 (323)
.+-++|+. .+|+|++....-++++.+|.
T Consensus 51 ~~l~~Y~~l~N~V~~~N~~HIRfLk~lGA 79 (86)
T PF11090_consen 51 KMLKQYPVLWNFVWVGNKSHIRFLKSLGA 79 (86)
T ss_pred HHHHHhhheeEEEEeCCHHHHHHHHhcCc
Confidence 34455777 99999998877789999886
No 224
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=25.46 E-value=2.2e+02 Score=21.58 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=25.2
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHHHHhCC--CeEEEEEcCc
Q 020623 145 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIK 187 (323)
Q Consensus 145 ~~~~~v~~f~~~~~~e~~~~~~~~l~~~A~~~~--~l~F~~vd~~ 187 (323)
.++|+++.|.....-..-......|+++..+++ ++.++.+..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d 68 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD 68 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc
Confidence 457887777763112233455566777777665 4666666654
No 225
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=25.46 E-value=3.8e+02 Score=22.04 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEEcCcc---hh-------hHh-hhc---CCcCCCCCCeEEEEeCCcc--eeeccCCCCC
Q 020623 163 QKLVTTLKAAASANRE-LVFCYVGIKQ---FA-------DFA-DTF---EANKKSKLPKMVVWDGNEN--YLTVIGSESI 225 (323)
Q Consensus 163 ~~~~~~l~~~A~~~~~-l~F~~vd~~~---~~-------~~~-~~~---gl~~~~~~P~ivI~~~~~k--Y~~~~~~~~~ 225 (323)
.+....|.+++++++- +..+-+|... |+ ..+ ..+ |+ ...|..+++|.+++ +...
T Consensus 66 r~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v---~~iPTt~LID~~G~~i~~~~------ 136 (153)
T TIGR02738 66 HQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP---VVTPATFLVNVNTRKAYPVL------ 136 (153)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCC---CCCCeEEEEeCCCCEEEEEe------
Confidence 4556778888888853 5555555431 21 111 233 44 47899999998742 3222
Q ss_pred CCCCCHHHHHHHHHHH
Q 020623 226 DEEDQGSQISRFLEGY 241 (323)
Q Consensus 226 ~~~~t~~~I~~Fi~~~ 241 (323)
.+..+.+.+.+.++..
T Consensus 137 ~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 137 QGAVDEAELANRMDEI 152 (153)
T ss_pred ecccCHHHHHHHHHHh
Confidence 2356788888877764
No 226
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.24 E-value=1.9e+02 Score=25.77 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=49.6
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEecCC--------hhHHHHHHHhhcCc-eeEEeecc-cchhhHhhcCCC------
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKKK-AWFAVAKD-FSEDTMVLYDFD------ 92 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~~~--------~~~f~~~A~~~~~~-~~F~~~~~-~~~~~~~~~~~~------ 92 (323)
++.+++.+.+++.+..+... ..+|-|+.. +..|.+++.+|..+ ..||.++- -=++.+.+|+++
T Consensus 126 ikyf~~~q~~deel~rnk~t-~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRT-YWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred eeeecchhhHHHHhccCCce-EEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 67776666666666665542 577888652 24789999998755 57877631 124566667653
Q ss_pred CCCeEEEecCCC
Q 020623 93 KVPALVALQPSY 104 (323)
Q Consensus 93 ~~p~ivv~k~~~ 104 (323)
..|++++|+.+-
T Consensus 205 QLPT~ilFq~gk 216 (265)
T KOG0914|consen 205 QLPTYILFQKGK 216 (265)
T ss_pred cCCeEEEEccch
Confidence 469999998753
No 227
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=24.91 E-value=2.7e+02 Score=20.02 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEe--cCChhHHHHHHHhhcCce-eEEeecccchhhHhhcCCCCCCeEEEecC
Q 020623 51 LFIGF--GLDESVMSNLALKYKKKA-WFAVAKDFSEDTMVLYDFDKVPALVALQP 102 (323)
Q Consensus 51 ~vVgf--~~~~~~f~~~A~~~~~~~-~F~~~~~~~~~~~~~~~~~~~p~ivv~k~ 102 (323)
.+|+. .++.+.+.+..+++.... .+....+....+...+++...|+++++.+
T Consensus 37 ~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~ 91 (95)
T PF13905_consen 37 EFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDP 91 (95)
T ss_dssp EEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEET
T ss_pred EEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECC
Confidence 44544 334456666666552221 22222222456777889888999998875
No 228
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=24.65 E-value=2e+02 Score=20.66 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcCcch----hhHhhhcCCcCCCCCCeEEE
Q 020623 162 SQKLVTTLKAAASANRELVFCYVGIKQF----ADFADTFEANKKSKLPKMVV 209 (323)
Q Consensus 162 ~~~~~~~l~~~A~~~~~l~F~~vd~~~~----~~~~~~~gl~~~~~~P~ivI 209 (323)
-....+.|++++.+++++.+..+|...- ..+....|. .....|+|.|
T Consensus 14 C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~-~~~~vP~ifi 64 (85)
T PRK11200 14 CVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK-PVETVPQIFV 64 (85)
T ss_pred HHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC-CCCcCCEEEE
Confidence 3567778888887776777777777632 123333343 2256899875
No 229
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=24.53 E-value=2.6e+02 Score=19.80 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=33.5
Q ss_pred hcCCCcEEEEEEeCCChhHHHHHH------HHHHHHHHhCCCeEEEEEcCcchhhHhhhcCCcCCCCCCeEEEEeC
Q 020623 143 KDDKRKIVLAIVEDETEEKSQKLV------TTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 212 (323)
Q Consensus 143 ~~~~~~~v~~f~~~~~~e~~~~~~------~~l~~~A~~~~~l~F~~vd~~~~~~~~~~~gl~~~~~~P~ivI~~~ 212 (323)
...++|+++.|... -=..-..+. ..++++.. +++.++.+|.+.........+ ...|.++++|+
T Consensus 14 ~~~~kpvlv~f~a~-wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~~~~----~~~P~~~~ldp 82 (82)
T PF13899_consen 14 KKEGKPVLVDFGAD-WCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQFDR----QGYPTFFFLDP 82 (82)
T ss_dssp HHHTSEEEEEEETT-TTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHHHHH----CSSSEEEEEET
T ss_pred HHcCCCEEEEEECC-CCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHHhCC----ccCCEEEEeCC
Confidence 34568888777542 111112222 23343222 348889999875543332211 23899999875
No 230
>PHA02554 13 neck protein; Provisional
Probab=23.61 E-value=1.1e+02 Score=28.39 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHhcCCCceecC-ChHHHHHHHHhc
Q 020623 10 GPRKAELLVRYLKKFVAPDVSILN-SDAEVSDFVENA 45 (323)
Q Consensus 10 G~R~a~~Iv~~l~k~~~p~v~~i~-s~~~l~~fl~~~ 45 (323)
-+++..+|..++.|++|-||..|+ +.+++.+.++.+
T Consensus 4 ~~~sp~eLkD~iLRrLGAPii~Ievt~dQi~D~I~rA 40 (311)
T PHA02554 4 NPNNPRELKDYILRRLGAPIINVEVTEDQIYDCIQRA 40 (311)
T ss_pred CCCCHHHHHHHHHHhcCCCeeEeecCHHHHHHHHHHH
Confidence 367899999999999999987663 567888777654
No 231
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=23.31 E-value=1.1e+02 Score=26.54 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=28.2
Q ss_pred CCCCeEEEEeCCcceeeccCCCCCCCCCCHHHHHHHHHHHHcCccccc
Q 020623 202 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQK 249 (323)
Q Consensus 202 ~~~P~ivI~~~~~kY~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~ 249 (323)
-+-|.+.|.| +|| +++|++.+.+-+++..+||..|.
T Consensus 165 vnaPmi~IND---~yy---------edlt~k~l~eIle~L~~~k~pp~ 200 (233)
T KOG3196|consen 165 VNAPMIAIND---DYY---------EDLTPKKLVEILEDLKAGKKPPA 200 (233)
T ss_pred ccCceeeecc---hhh---------ccCCHHHHHHHHHHHhcCCCCCC
Confidence 3468777766 343 13899999999999999999885
No 232
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.38 E-value=1e+02 Score=18.86 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHhhcCCCeeec
Q 020623 113 PFDEEFLEEFIKQNFLPLSVPI 134 (323)
Q Consensus 113 ~~~~~~L~~fI~~~~~Plv~~~ 134 (323)
..+.++|++|+..+.+|.=...
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC
Confidence 4577899999999887765444
No 233
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=21.68 E-value=1.2e+02 Score=20.99 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHhhcCCCeeecChhhHHHhhcCC
Q 020623 112 GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDK 146 (323)
Q Consensus 112 g~~~~~~L~~fI~~~~~Plv~~~t~~~~~~~~~~~ 146 (323)
.|..-++|..|++.+.+|...+.+......+++..
T Consensus 23 ePI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~~ 57 (64)
T PF09494_consen 23 EPINLEELHAWLKASGIGFDRKVDPSKLKEWLDSQ 57 (64)
T ss_pred CCccHHHHHHHHHHcCCCccceeCHHHHHHHHHHC
Confidence 56788999999999999999999999999998753
No 234
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=21.23 E-value=5.2e+02 Score=21.99 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=33.5
Q ss_pred hHhhhcCCc-C--CCCCCeEEEEeCCcc--eeeccCCCCCCCCCCHHHHHHHHHHHHcCcccccccCC--CCCC
Q 020623 191 DFADTFEAN-K--KSKLPKMVVWDGNEN--YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVAG--PSIF 257 (323)
Q Consensus 191 ~~~~~~gl~-~--~~~~P~ivI~~~~~k--Y~~~~~~~~~~~~~t~~~I~~Fi~~~~~Gkl~~~~kSe--P~~~ 257 (323)
.++..||+- . +...|...|+|++++ +... + ..-...++.+.++.+.+++.... .+. |..|
T Consensus 111 ~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~-~-----~~~~~r~~~e~l~~l~a~~~~~~-~~~~cp~~w 177 (199)
T PTZ00253 111 SIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITV-N-----DMPVGRNVEEVLRLLEAFQFVEK-HGEVCPANW 177 (199)
T ss_pred HHHHHcCCcccCCCceEEEEEEECCCCEEEEEEe-c-----CCCCCCCHHHHHHHHHhhhhHHh-cCCEeCCCC
Confidence 466778862 1 123588899998763 3221 1 01233456666666666665443 244 7666
No 235
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=20.23 E-value=3.6e+02 Score=23.54 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=56.5
Q ss_pred ceecCChHHHHHHHHhcCCcccEEEEec-CC-------hhHHHHHHHhhcCceeEEeecc-cchhhHhhcCCCCCCeEEE
Q 020623 29 VSILNSDAEVSDFVENAGTFFPLFIGFG-LD-------ESVMSNLALKYKKKAWFAVAKD-FSEDTMVLYDFDKVPALVA 99 (323)
Q Consensus 29 v~~i~s~~~l~~fl~~~~~~~~~vVgf~-~~-------~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~~~~~~~~p~ivv 99 (323)
..+|.|+.++=.+...... +++-|. ++ +..++.+|.++.+ ..|..++. ..+=++.++++...|+|++
T Consensus 68 y~ev~~Ekdf~~~~~kS~k---VVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSEK---VVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred EEEeccHHHHHHHhhcCce---EEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 6788888777666655542 344443 22 3577889998874 45554421 1233455777777899999
Q ss_pred ecCCCCC-Cc-ccc--C---CCCHHHHHHHHHhhc
Q 020623 100 LQPSYNE-HN-IFY--G---PFDEEFLEEFIKQNF 127 (323)
Q Consensus 100 ~k~~~~~-~~-~y~--g---~~~~~~L~~fI~~~~ 127 (323)
|+++.-. +. -|. | +|+.+.|+.=|....
T Consensus 144 ~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~ 178 (211)
T KOG1672|consen 144 FKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSG 178 (211)
T ss_pred EEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhcc
Confidence 9974221 11 133 3 477777766655443
No 236
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=20.19 E-value=70 Score=28.65 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=21.0
Q ss_pred CCcccccCCCCChHHHHHHHHHh
Q 020623 2 HGIPTEYYGPRKAELLVRYLKKF 24 (323)
Q Consensus 2 ~G~~~eY~G~R~a~~Iv~~l~k~ 24 (323)
+|+-..|.|+|+.+++++|+..+
T Consensus 103 DGeFrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 103 DGEFRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred ccccccccCcccchhHHHHHHhh
Confidence 67778899999999999999887
Done!