BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020624
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 159 RVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
R++ D C +C ++ E +L CGH Y DCL+N++ ++ + CPVC
Sbjct: 4 RLTVPELQDQLQCPICLEVFKE---PLMLQCGHSYCKDCLDNLSQHLDS-ELCCPVC 56
>sp|Q9JIT1|RNF32_MOUSE RING finger protein 32 OS=Mus musculus GN=Rnf32 PE=2 SV=1
Length = 368
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSE 227
+Q C +C + EL +L+C H++H CL+ NK CP+C + +T + +
Sbjct: 126 IQPCPICKEEF-ELHPQVLLSCSHVFHRACLQAFEKFTNK--KTCPLCRKNQYQTRVIHD 182
Query: 228 RALKSEMESKARNNKRWKNRIV 249
A ++ R W+ IV
Sbjct: 183 GARLFRVKCATRIQAYWRGYIV 204
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 142 DSESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 201
D + G E+I R + ++TC VC +E + L C H YH C++
Sbjct: 542 DDQPRGLTKEQIDNLAMRSFGENDA-LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRW 600
Query: 202 TAEINKYDPACPVC 215
+E + CP+C
Sbjct: 601 LSE----NSTCPIC 610
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 142 DSESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 201
D + G E+I +R + ++TC VC +E + L C H YH C++
Sbjct: 557 DDQPRGLTKEQIDNLSTRNFGENDA-LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRW 615
Query: 202 TAEINKYDPACPVC 215
+E + CP+C
Sbjct: 616 LSE----NSTCPIC 625
>sp|P12868|PEP5_YEAST Vacuolar membrane protein PEP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEP5 PE=1 SV=2
Length = 1029
Score = 37.0 bits (84), Expect = 0.19, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCL--ENITAEINKYDPACPVCTLGEKKTHKLS 226
QTC +C +L ++ VV CGH+YH CL E T E + CP C + + ++KL
Sbjct: 926 QTCFMC-RLTLDIPVV-FFKCGHIYHQHCLNEEEDTLESERKLFKCPKCLVDLETSNKLF 983
Query: 227 ERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRHK 264
E A++ KN +++ L+S DR K
Sbjct: 984 E----------AQHEVVEKNDLLNFALNSEEGSRDRFK 1011
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 142 DSESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 201
D + G E+I +R + ++TC VC +E + L C H YH C++
Sbjct: 540 DDQPRGLTKEQIDNLSTRNFGENDA-LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRW 598
Query: 202 TAEINKYDPACPVC 215
+E + CP+C
Sbjct: 599 LSE----NSTCPIC 608
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERAL 230
C +C LL A L CGH + CLE + + ACP C G + L + L
Sbjct: 21 CIICQGLLD---WPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKNTL 77
Query: 231 KSEMESKARNNKR 243
++ K R R
Sbjct: 78 LQDLADKYRRAAR 90
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 163 SSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
+S ++ TC VC + + + V+A+L C H +HA CLE D CPVC
Sbjct: 252 TSLTELPTCAVCLERMDD-SVLAIL-CNHSFHARCLEQWA------DNTCPVC 296
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 142 DSESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 201
D + G E+I +R + ++TC VC +E + L C H YH C++
Sbjct: 675 DDQPRGLTKEQIDNLSTRNYGENDA-LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRW 733
Query: 202 TAEINKYDPACPVC 215
+E + CP+C
Sbjct: 734 LSE----NSTCPIC 743
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
++TC VC +E + L C H YH C++ +E + CP+C
Sbjct: 543 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE----NSTCPIC 586
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSE 227
+Q C +C + EL +L+C H++H CL+ NK CP+C + +T +
Sbjct: 124 VQPCPICKEEF-ELRPQVLLSCSHVFHRACLQAFEKFTNK--KTCPLCRKNQYQTRVIHG 180
Query: 228 RALKSEMESKARNNKRWKNRIV 249
A ++ R W+ +V
Sbjct: 181 GARLFRIKCVTRIQAYWRGYVV 202
>sp|Q75DC2|ASR1_ASHGO Alcohol-sensitive RING finger protein 1 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=ASR1 PE=3 SV=1
Length = 328
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 28/161 (17%)
Query: 97 REERPVIPSWSNESTVGSGVGSS-DGWSM--NAFSELMATSHKERWSFDSESLGFNHEKI 153
R E V+ +E + VG D + + S+L+A + ++ + D E N E +
Sbjct: 61 RTEASVLVDTDHEVKIDLSVGQLLDFYGLLDEIGSQLLAITLQDHSTQDDE---VNEEGL 117
Query: 154 ARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINK------ 207
A + + + CG+C ++ ++ C H+YH CL + E+N
Sbjct: 118 AEQ------RAQLTLVQCGICGEMNGDI-DTCCNRCHHMYHHSCLGQLLVEVNAEREQGW 170
Query: 208 ------YDPACPVCTLGEKKTHKLSERALKSEMESKARNNK 242
Y+ P+ G ++ L +R + + RNN+
Sbjct: 171 SHCIFCYEQLVPLYISGARRVLSLQDRGVH---RGRVRNNR 208
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 35.0 bits (79), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
D +C VC +L +V +LTC H++H C++ E CP+C
Sbjct: 273 DGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLE----HRTCPMC 317
>sp|Q9H0A6|RNF32_HUMAN RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1
Length = 362
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSE 227
+Q C +C + EL +L+C H++H CL+ NK CP+C + +T + +
Sbjct: 124 VQPCPICKEEF-ELRPQVLLSCSHVFHKACLQAFEKFTNK--KTCPLCRKNQYQTRVIHD 180
Query: 228 RALKSEMESKARNNKRWKNRIV 249
A ++ R W+ +V
Sbjct: 181 GARLFRIKCVTRIQAYWRGCVV 202
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
D +C VC +L +V +LTC H++H C++ E CP+C
Sbjct: 273 DGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLE----HRTCPMC 317
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
D +C VC +L +V +LTC H++H C++ E CP+C
Sbjct: 273 DGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHR----TCPMC 317
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
D +C VC +L +V +LTC H++H C++ E CP+C
Sbjct: 276 DGDSCAVCIELYKPNDLVRILTCNHVFHKTCVDPWLLE----HRTCPMC 320
>sp|Q91W86|VPS11_MOUSE Vacuolar protein sorting-associated protein 11 homolog OS=Mus
musculus GN=Vps11 PE=1 SV=3
Length = 941
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 152 KIARSCSRVSASSSVDMQT-CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDP 210
+I + + AS + +T C +C+ L EL V L CGH +H C E+ + D
Sbjct: 802 RIRQEIQELKASPKIFQKTKCSICNSAL-ELPSVHFL-CGHSFHQHCFESYSES----DA 855
Query: 211 ACPVCTLGEKKTHKLSERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRH-KGSWNE 269
CP C +K + RA E K + ++++++ SN DS SV+ D +G +N+
Sbjct: 856 DCPTCLPENRKVMDMI-RA----QEQKRDLHDQFQHQLKCSN-DSFSVIADYFGRGVFNK 909
>sp|Q9H270|VPS11_HUMAN Vacuolar protein sorting-associated protein 11 homolog OS=Homo
sapiens GN=VPS11 PE=1 SV=1
Length = 941
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 152 KIARSCSRVSASSSVDMQT-CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDP 210
+I + + AS + +T C +C+ L EL V L CGH +H C E+ + D
Sbjct: 802 RIRQEIQELKASPKIFQKTKCSICNSAL-ELPSVHFL-CGHSFHQHCFESYSES----DA 855
Query: 211 ACPVCTLGEKKTHKLSERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRH-KGSWNE 269
CP C +K + RA E K + ++++++ SN DS SV+ D +G +N+
Sbjct: 856 DCPTCLPENRKVMDMI-RA----QEQKRDLHDQFQHQLRCSN-DSFSVIADYFGRGVFNK 909
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC--TLGEKKTHKLS 226
Q C +C ++ + + TCGHLY + CLE K+ +CP+C L + + +
Sbjct: 1090 QICIICRDIIKQGFIT---TCGHLYCSFCLEAWL----KHSSSCPMCKTKLNKNNAYYIG 1142
Query: 227 E-RALKSEMESKARNNKR 243
E R + S E NKR
Sbjct: 1143 ESRDIYSRQEFVTGFNKR 1160
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLS 226
D +C VC + VV +LTC H +H +C++ E CP+C K+ ++
Sbjct: 256 DGDSCAVCIEPYKPSDVVRILTCNHFFHKNCIDPWLLE----HRTCPMCKCDILKSLGIA 311
Query: 227 E 227
E
Sbjct: 312 E 312
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPA----CPVCTLGEKK---TH 223
C +CS VA + CGH +H CL I ++ A CP C + K +
Sbjct: 7 CTICSDFFDHSRDVAAIHCGHTFHLQCL------IQWFETAPSRTCPQCRIQVGKRTIIN 60
Query: 224 KL-------SERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRHKGSWNEGKGPKMA 276
KL E L +E +N R + D + V++D + + E + A
Sbjct: 61 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEE----RNA 116
Query: 277 SSSSLKSSSGK 287
+ SL+ + GK
Sbjct: 117 TVVSLQQALGK 127
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 158 SRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCL-ENITA-EINKYDPACPVC 215
++V + V TC +C KLL + ++ C H + C+ E IT EI +CPVC
Sbjct: 7 AKVKRETVVACMTCPLCDKLLRDATTIS--ECLHTFCRKCIYEKITEDEIE----SCPVC 60
Query: 216 --TLGEKKTHKLSERALKSEMESKARNNKRWKNR 247
LG KL + ++ +K KR K R
Sbjct: 61 DIDLGGTPLEKLRPDHILQDLRAKLFPLKRKKER 94
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
C VC + C++ L CGH++H +C I + CPVC
Sbjct: 618 CVVCLENFENGCLLMGLPCGHVFHQNC---IVMWLAGGRHCCPVC 659
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
C VC + C++ L CGH++H +C I + CPVC
Sbjct: 619 CVVCLENFENGCLLMGLPCGHVFHQNC---IVMWLAGGRHCCPVC 660
>sp|O00237|RN103_HUMAN E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1
SV=1
Length = 685
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
C VC + C++ L CGH++H +C I + CPVC
Sbjct: 621 CVVCLENFENGCLLMGLPCGHVFHQNC---IVMWLAGGRHCCPVC 662
>sp|Q757D9|BRE1_ASHGO E3 ubiquitin-protein ligase BRE1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BRE1
PE=3 SV=1
Length = 643
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCL-ENITAEINKYDPACPVCTLG 218
C +CSK + + TCGH++ ADC E + A + K CP C G
Sbjct: 591 CSLCSKNWKD---TVIKTCGHVFCADCCKERLAARMRK----CPTCNKG 632
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADC-LENIT-AEINKYDPACPVC--TLGEKKTHKLS 226
C +C++ L +A+ CGH Y +C LE+ E N P CP C + + K KL
Sbjct: 916 CSICTQSPIPLGEMALTPCGHAYCLNCVLEHFDFQEKNSQKPLCPNCREPISKYKIFKLR 975
Query: 227 ER---------ALKSEMESKARNNK 242
R K EME ++N K
Sbjct: 976 HRDTSVKEIRFHTKQEMEDPSQNFK 1000
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 171 CGVCSKLLSELCVVAVL--TCGHLYHADCLENITAEINKYDPACPVC--TLGEKKTHKLS 226
C +C E ++ L TC H++H +C++ E NK CPVC L +
Sbjct: 114 CAICLLEFEEEHILLRLLTTCYHVFHQECIDQ-WLESNK---TCPVCRRNLDPNAPENIK 169
Query: 227 ERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLDRHKGSWNEGKGPKMASSSSLKSSSG 286
E ++ E+ +NR + SN V+L R NE K + S ++G
Sbjct: 170 ELIIEVIQENAH------ENRDQEQTSTSNEVMLSRQSSGNNERKIETLPDKFSRSKTTG 223
>sp|Q9CWS1|RN135_MOUSE E3 ubiquitin-protein ligase RNF135 OS=Mus musculus GN=Rnf135 PE=2
SV=1
Length = 417
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 165 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI----TAEINKYDPACPVCTLGEK 220
S D +C +C LL + L CGH + CL ++ ++ ACP+C G
Sbjct: 15 SEDDLSCIICQGLLDQ---PTTLPCGHSFCLRCLHDLWVSKRGAVDGCPWACPICRKGPL 71
Query: 221 KTHKLSERALKSEMESKARNNKR 243
KL + L ++ K R
Sbjct: 72 TKPKLHKNPLLQDLVDKYLQAAR 94
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221
D C VC + + VV VL C H++H C++ +E CP+C L K
Sbjct: 260 DFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSE----HCTCPMCKLNILK 310
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217
D C VC + + VV VL C H++H C++ +E CP+C L
Sbjct: 260 DFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSE----HCTCPMCKL 306
>sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF
PE=1 SV=3
Length = 3046
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216
C VC KL LC TC +YH +C++ E+ + + C VC
Sbjct: 393 CRVCHKLGDLLCCE---TCSAVYHLECVKPPLEEVPEDEWQCEVCV 435
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 16/58 (27%)
Query: 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDP------ACPVCTL 217
VD + C VC + V+ +L C H++H C+ DP CP+C L
Sbjct: 260 VDAENCAVCIENFKVKDVIRILPCKHIFHRICI----------DPWLLDHRTCPMCKL 307
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217
+D + C VC + +V +L C H++H C++ E CP+C L
Sbjct: 259 IDAENCAVCIENYKTKDLVRILPCKHIFHRLCIDPWLIE----HRTCPMCKL 306
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217
VD + C VC + ++ +L C H++H C++ + CP+C L
Sbjct: 264 VDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLD----HRTCPMCKL 311
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
D C +C ++ E +L CGH Y +CL++++ ++ + CPVC
Sbjct: 12 DQLQCPICLEVFKE---PLMLQCGHSYCKNCLDSLSEHLDS-ELRCPVC 56
>sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis
thaliana GN=MBD9 PE=2 SV=1
Length = 2176
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLS 226
D C VC + V+ TC YH CL I + CP C + + +++
Sbjct: 1286 DEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCVIAK----RMA 1341
Query: 227 ERALKSEMESKARNNKRWKNRIVDSNLDSNSVVLD 261
+ AL+S + R ++++ + ++++ + + D
Sbjct: 1342 QEALESYKLVRRRKGRKYQGELTRASMELTAHLAD 1376
>sp|Q91187|RAG1_ONCMY V(D)J recombination-activating protein 1 OS=Oncorhynchus mykiss
GN=rag1 PE=3 SV=1
Length = 1073
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217
TC VC LLSE C HL+ C I I P CP CTL
Sbjct: 309 TCQVCDHLLSE---PVQSPCRHLFCRSC---IAKYIYSLGPHCPACTL 350
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221
D C VC + + VV +L C H++H C++ +E CP+C L K
Sbjct: 260 DFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSE----HCTCPMCKLNILK 310
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216
++C +C + + +L C H YH++C+ N +INK CPVC+
Sbjct: 286 ESCVICRLDYEDDEDLILLPCKHSYHSECINNWL-KINK---VCPVCS 329
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 152 KIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPA 211
KI + S +D C +C + + +L C H +H +C++ E
Sbjct: 284 KIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIE----HRT 339
Query: 212 CPVCTLGEKKTH 223
CP+C L K +
Sbjct: 340 CPMCKLDVLKFY 351
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 171 CGVC-SKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
C VC S +S+ + + CGH++H CL+ + NK CP+C
Sbjct: 85 CTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKI--TCPIC 128
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 160 VSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215
VS+S + C VC + L CGH YH DC+ N +CPVC
Sbjct: 246 VSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRN----SCPVC 297
>sp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana
GN=ATL71 PE=3 SV=1
Length = 197
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 22/98 (22%)
Query: 136 KERWSFDS--------ESLGFNHE------KIARSCSRVSASSSVDMQTCGVCSKLLSE- 180
+ER+ F+ E LG E K+ +RVS S + T CS L++
Sbjct: 77 QERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADY 136
Query: 181 --LCVVAVLT-CGHLYHADCLENITAEINKYDPACPVC 215
+ ++ VL C HL+H +C++ + P CPVC
Sbjct: 137 KKMDMIRVLPDCNHLFHDNCVDPWL----RLHPTCPVC 170
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSE 227
C VC ++ VL C H +HA C++ K + CP+C + H+ SE
Sbjct: 463 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL----KANRTCPICRADASEVHRDSE 515
>sp|Q5M929|RN135_RAT E3 ubiquitin-protein ligase RNF135 OS=Rattus norvegicus GN=Rnf135
PE=2 SV=1
Length = 415
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENI----TAEINKYDPACPVCTLGEKKTHKL 225
+C +C LL L CGH + CL+++ A ++ ACP+C G L
Sbjct: 20 SCIICQGLLDW---PTTLPCGHSFCLQCLKDLWVSKRAGVDSCPWACPICRKGPSAKPVL 76
Query: 226 SERALKSEMESKARN 240
+ L ++ K R
Sbjct: 77 HKNPLLQDLVDKYRQ 91
>sp|Q6FWF3|BRE1_CANGA E3 ubiquitin-protein ligase BRE1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=BRE1 PE=3 SV=1
Length = 693
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 171 CGVCSKLLSELCVVAVLTCGHLYHADCL-ENITAEINKYDPACPVC 215
C +CSK + A+ TCGH++ DC E + A + K CP C
Sbjct: 641 CSLCSKNWKNM---AIRTCGHVFCEDCCKERLAARMRK----CPTC 679
>sp|P38681|NIR_NEUCR Nitrite reductase [NAD(P)H] OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nit-6 PE=2 SV=2
Length = 1176
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 32 SPAKLSLSL---PSTSSLTSSPLSSQSHLYPASSTTAKWPRHSPGH 74
SPA SL++ PST SLT+ P HL A+ ++A P +PGH
Sbjct: 112 SPATKSLTISPPPSTPSLTTLPYD---HLILATGSSALLPTSTPGH 154
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 159 RVSASSSVDMQT-CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217
R + S+ QT C VC ++ VL C H +HA C++ K + CP+C
Sbjct: 453 RFNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL----KGNRTCPICRA 508
Query: 218 GEKKTHKLSE 227
+ H+ SE
Sbjct: 509 DASEVHRDSE 518
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.123 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,731,893
Number of Sequences: 539616
Number of extensions: 4334618
Number of successful extensions: 14296
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 13732
Number of HSP's gapped (non-prelim): 468
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)