Query 020624
Match_columns 323
No_of_seqs 353 out of 1573
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:52:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.4 2.8E-13 6.1E-18 94.1 2.1 44 169-216 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.2 9.6E-12 2.1E-16 121.1 2.9 47 169-218 230-276 (348)
3 PF15227 zf-C3HC4_4: zinc fing 99.1 2.4E-11 5.3E-16 84.2 2.2 42 171-215 1-42 (42)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 6.2E-11 1.3E-15 91.5 3.3 46 167-216 18-73 (73)
5 PHA02929 N1R/p28-like protein; 99.0 3.6E-10 7.7E-15 105.5 3.3 50 167-220 173-227 (238)
6 PLN03208 E3 ubiquitin-protein 98.9 9.1E-10 2E-14 99.5 4.5 51 167-220 17-79 (193)
7 smart00504 Ubox Modified RING 98.9 1.5E-09 3.3E-14 80.0 4.4 45 169-220 2-46 (63)
8 KOG0317 Predicted E3 ubiquitin 98.9 8.4E-10 1.8E-14 104.4 3.7 48 167-221 238-285 (293)
9 KOG0823 Predicted E3 ubiquitin 98.9 8.9E-10 1.9E-14 101.5 3.0 56 167-226 46-103 (230)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 8.4E-10 1.8E-14 74.9 1.8 39 171-215 1-39 (39)
11 COG5243 HRD1 HRD ubiquitin lig 98.8 2.1E-09 4.5E-14 104.7 3.2 49 166-218 285-343 (491)
12 TIGR00599 rad18 DNA repair pro 98.8 4.2E-09 9.1E-14 104.8 4.8 48 167-221 25-72 (397)
13 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.3E-09 5E-14 76.4 2.2 47 167-220 1-48 (50)
14 COG5540 RING-finger-containing 98.8 4.1E-09 8.8E-14 100.4 3.5 50 167-219 322-371 (374)
15 cd00162 RING RING-finger (Real 98.7 1.5E-08 3.2E-13 68.3 3.8 44 170-218 1-44 (45)
16 PF12861 zf-Apc11: Anaphase-pr 98.7 1E-08 2.2E-13 81.4 3.3 51 167-219 20-81 (85)
17 PF00097 zf-C3HC4: Zinc finger 98.7 9.8E-09 2.1E-13 69.8 2.2 41 171-215 1-41 (41)
18 PHA02926 zinc finger-like prot 98.7 1.4E-08 3.1E-13 93.3 3.6 56 167-222 169-232 (242)
19 PF14634 zf-RING_5: zinc-RING 98.6 2.3E-08 5E-13 69.6 2.6 44 170-217 1-44 (44)
20 smart00184 RING Ring finger. E 98.6 4.9E-08 1.1E-12 63.4 3.0 39 171-215 1-39 (39)
21 KOG0320 Predicted E3 ubiquitin 98.5 3.8E-08 8.2E-13 87.6 2.7 46 167-217 130-175 (187)
22 KOG0287 Postreplication repair 98.5 4.5E-08 9.8E-13 94.6 3.3 48 167-221 22-69 (442)
23 PF13445 zf-RING_UBOX: RING-ty 98.5 4.3E-08 9.4E-13 68.5 2.0 42 171-213 1-43 (43)
24 KOG0802 E3 ubiquitin ligase [P 98.5 4.7E-08 1E-12 101.0 2.6 47 167-217 290-338 (543)
25 PF04564 U-box: U-box domain; 98.5 7E-08 1.5E-12 74.3 2.8 64 167-236 3-66 (73)
26 KOG2177 Predicted E3 ubiquitin 98.3 2.7E-07 5.8E-12 83.4 1.8 45 166-217 11-55 (386)
27 COG5432 RAD18 RING-finger-cont 98.2 4.2E-07 9.1E-12 86.5 2.0 47 167-220 24-70 (391)
28 TIGR00570 cdk7 CDK-activating 98.2 1.5E-06 3.3E-11 83.8 5.2 52 166-220 1-54 (309)
29 COG5574 PEX10 RING-finger-cont 98.2 6.2E-07 1.3E-11 84.3 2.2 48 166-219 213-261 (271)
30 KOG2164 Predicted E3 ubiquitin 98.1 1.1E-06 2.5E-11 88.9 2.9 49 168-219 186-235 (513)
31 COG5194 APC11 Component of SCF 98.1 1.7E-06 3.7E-11 67.8 2.8 28 188-219 53-80 (88)
32 KOG0804 Cytoplasmic Zn-finger 98.1 7.6E-07 1.7E-11 88.8 0.9 47 166-219 173-221 (493)
33 KOG1493 Anaphase-promoting com 97.9 2.7E-06 5.9E-11 66.1 0.4 50 167-219 19-80 (84)
34 smart00744 RINGv The RING-vari 97.8 1.6E-05 3.5E-10 56.9 3.5 44 170-216 1-49 (49)
35 KOG1734 Predicted RING-contain 97.8 5.2E-06 1.1E-10 78.4 0.9 51 166-218 222-279 (328)
36 KOG0827 Predicted E3 ubiquitin 97.8 7.2E-06 1.6E-10 80.7 1.9 49 168-217 4-53 (465)
37 PF14835 zf-RING_6: zf-RING of 97.7 1.2E-05 2.5E-10 60.8 0.6 49 167-223 6-54 (65)
38 KOG0828 Predicted E3 ubiquitin 97.7 1.8E-05 3.9E-10 80.0 2.1 50 167-219 570-633 (636)
39 KOG2930 SCF ubiquitin ligase, 97.7 2.3E-05 4.9E-10 64.3 2.0 49 166-218 44-106 (114)
40 KOG0825 PHD Zn-finger protein 97.6 1.1E-05 2.5E-10 85.0 -0.2 56 167-226 122-177 (1134)
41 KOG0311 Predicted E3 ubiquitin 97.6 1E-05 2.3E-10 78.8 -1.1 46 167-217 42-87 (381)
42 KOG1645 RING-finger-containing 97.5 9.9E-05 2.2E-09 73.3 4.6 50 167-218 3-54 (463)
43 KOG0978 E3 ubiquitin ligase in 97.4 6.2E-05 1.3E-09 79.5 1.9 48 167-220 642-689 (698)
44 KOG1039 Predicted E3 ubiquitin 97.4 8.8E-05 1.9E-09 72.9 2.5 54 166-220 159-221 (344)
45 PF11793 FANCL_C: FANCL C-term 97.4 5.2E-05 1.1E-09 58.1 0.6 52 168-219 2-65 (70)
46 KOG0824 Predicted E3 ubiquitin 97.3 0.00014 3E-09 69.8 2.6 51 166-222 5-55 (324)
47 KOG4159 Predicted E3 ubiquitin 97.3 0.00014 3E-09 72.9 2.5 50 167-223 83-132 (398)
48 COG5219 Uncharacterized conser 97.3 0.00011 2.5E-09 79.0 2.0 51 167-219 1468-1522(1525)
49 KOG1785 Tyrosine kinase negati 97.1 0.00013 2.7E-09 72.4 0.4 53 169-226 370-422 (563)
50 KOG4265 Predicted E3 ubiquitin 97.0 0.00039 8.5E-09 68.1 2.5 47 168-221 290-337 (349)
51 KOG2660 Locus-specific chromos 96.9 0.00063 1.4E-08 66.1 3.2 52 166-223 13-64 (331)
52 KOG4172 Predicted E3 ubiquitin 96.8 0.00026 5.7E-09 51.9 -0.2 50 169-224 8-58 (62)
53 KOG1941 Acetylcholine receptor 96.8 0.0004 8.7E-09 68.8 1.0 48 167-216 364-412 (518)
54 PF11789 zf-Nse: Zinc-finger o 96.7 0.00055 1.2E-08 50.5 1.0 44 167-214 10-53 (57)
55 COG5152 Uncharacterized conser 96.7 0.00078 1.7E-08 61.5 2.2 50 168-224 196-245 (259)
56 KOG0297 TNF receptor-associate 96.7 0.00085 1.8E-08 67.1 2.3 49 166-220 19-67 (391)
57 KOG2879 Predicted E3 ubiquitin 96.5 0.0017 3.7E-08 61.8 2.8 55 161-219 232-286 (298)
58 PF10367 Vps39_2: Vacuolar sor 96.4 0.00093 2E-08 53.7 0.5 32 167-199 77-108 (109)
59 KOG1814 Predicted E3 ubiquitin 96.3 0.0047 1E-07 61.7 4.9 74 167-240 183-260 (445)
60 KOG1813 Predicted E3 ubiquitin 96.3 0.0024 5.2E-08 61.3 2.3 52 168-226 241-292 (313)
61 KOG4445 Uncharacterized conser 96.2 0.0012 2.7E-08 63.5 0.2 53 166-218 113-184 (368)
62 KOG3039 Uncharacterized conser 96.1 0.0034 7.3E-08 59.1 2.5 51 167-221 220-271 (303)
63 COG5222 Uncharacterized conser 96.1 0.0062 1.3E-07 58.8 4.1 45 168-217 274-318 (427)
64 KOG1428 Inhibitor of type V ad 96.1 0.011 2.3E-07 66.7 6.3 56 167-222 3485-3546(3738)
65 KOG1571 Predicted E3 ubiquitin 95.7 0.0044 9.6E-08 60.9 1.5 44 167-220 304-347 (355)
66 KOG1940 Zn-finger protein [Gen 95.4 0.0092 2E-07 57.2 2.3 56 167-227 157-213 (276)
67 PF04641 Rtf2: Rtf2 RING-finge 95.2 0.015 3.3E-07 55.0 3.3 51 166-221 111-162 (260)
68 KOG1002 Nucleotide excision re 95.2 0.01 2.2E-07 61.1 1.9 49 167-218 535-584 (791)
69 COG5175 MOT2 Transcriptional r 95.1 0.021 4.5E-07 56.1 3.9 50 166-218 12-62 (480)
70 PF12906 RINGv: RING-variant d 94.9 0.021 4.5E-07 40.4 2.5 42 171-215 1-47 (47)
71 KOG3970 Predicted E3 ubiquitin 94.9 0.04 8.7E-07 51.4 4.7 59 167-226 49-111 (299)
72 KOG4185 Predicted E3 ubiquitin 94.8 0.037 8E-07 52.7 4.5 49 168-219 3-54 (296)
73 PF14570 zf-RING_4: RING/Ubox 94.8 0.014 2.9E-07 41.9 1.1 45 171-219 1-47 (48)
74 KOG2114 Vacuolar assembly/sort 94.7 0.024 5.3E-07 61.1 3.3 44 167-219 839-882 (933)
75 PHA03096 p28-like protein; Pro 94.7 0.018 4E-07 55.4 2.2 48 169-217 179-231 (284)
76 PHA02825 LAP/PHD finger-like p 94.3 0.044 9.4E-07 48.6 3.6 47 166-218 6-57 (162)
77 PF05883 Baculo_RING: Baculovi 94.2 0.02 4.3E-07 49.4 1.1 37 168-204 26-68 (134)
78 PHA02862 5L protein; Provision 94.2 0.037 8E-07 48.3 2.7 46 169-220 3-53 (156)
79 KOG1952 Transcription factor N 94.1 0.18 4E-06 54.6 8.3 54 166-219 189-246 (950)
80 KOG4739 Uncharacterized protei 93.6 0.022 4.7E-07 53.4 0.3 44 168-218 3-46 (233)
81 KOG4692 Predicted E3 ubiquitin 93.6 0.045 9.7E-07 54.1 2.4 49 163-219 417-466 (489)
82 KOG4275 Predicted E3 ubiquitin 93.4 0.01 2.2E-07 57.1 -2.3 41 168-219 300-341 (350)
83 KOG3268 Predicted E3 ubiquitin 93.0 0.076 1.7E-06 48.0 2.8 53 167-219 164-227 (234)
84 KOG0827 Predicted E3 ubiquitin 92.9 0.018 4E-07 57.3 -1.4 53 167-223 195-248 (465)
85 KOG1001 Helicase-like transcri 92.9 0.039 8.5E-07 59.0 1.0 45 169-219 455-499 (674)
86 PF14447 Prok-RING_4: Prokaryo 92.9 0.044 9.6E-07 40.3 0.9 44 167-219 6-49 (55)
87 KOG3161 Predicted E3 ubiquitin 92.6 0.043 9.3E-07 57.8 0.8 44 167-219 10-56 (861)
88 KOG0826 Predicted E3 ubiquitin 92.5 0.087 1.9E-06 51.5 2.6 46 167-218 299-344 (357)
89 KOG0801 Predicted E3 ubiquitin 92.4 0.039 8.4E-07 49.1 0.1 29 167-195 176-204 (205)
90 PF07800 DUF1644: Protein of u 92.0 0.23 5.1E-06 44.0 4.5 56 167-225 1-96 (162)
91 KOG2034 Vacuolar sorting prote 92.0 0.07 1.5E-06 58.0 1.5 36 167-203 816-851 (911)
92 COG5236 Uncharacterized conser 91.4 0.16 3.4E-06 50.2 3.0 46 166-218 59-106 (493)
93 KOG3002 Zn finger protein [Gen 91.3 0.19 4.1E-06 48.9 3.4 46 166-222 46-93 (299)
94 KOG4367 Predicted Zn-finger pr 91.0 0.092 2E-06 53.2 1.0 35 167-204 3-37 (699)
95 KOG2932 E3 ubiquitin ligase in 90.0 0.13 2.9E-06 50.0 1.1 40 169-217 91-131 (389)
96 KOG0298 DEAD box-containing he 89.9 0.12 2.6E-06 58.2 0.8 45 167-217 1152-1196(1394)
97 PF08746 zf-RING-like: RING-li 89.6 0.14 3.1E-06 35.6 0.7 43 171-215 1-43 (43)
98 KOG2817 Predicted E3 ubiquitin 87.6 0.41 8.9E-06 47.9 2.8 49 168-217 334-382 (394)
99 PF10272 Tmpp129: Putative tra 87.6 1.2 2.5E-05 44.5 5.9 55 165-221 268-352 (358)
100 KOG3800 Predicted E3 ubiquitin 87.4 0.79 1.7E-05 44.3 4.4 45 170-217 2-48 (300)
101 PF05290 Baculo_IE-1: Baculovi 86.6 0.63 1.4E-05 40.2 3.0 52 167-222 79-134 (140)
102 PF14446 Prok-RING_1: Prokaryo 85.9 0.67 1.5E-05 34.0 2.4 34 167-200 4-38 (54)
103 smart00249 PHD PHD zinc finger 80.6 0.51 1.1E-05 31.4 -0.0 46 170-215 1-47 (47)
104 KOG0309 Conserved WD40 repeat- 80.4 1 2.2E-05 48.7 2.0 24 187-214 1046-1069(1081)
105 KOG3039 Uncharacterized conser 79.8 1.4 3E-05 41.9 2.6 35 167-204 42-76 (303)
106 KOG1812 Predicted E3 ubiquitin 79.0 1 2.2E-05 45.2 1.5 48 167-214 145-195 (384)
107 KOG3053 Uncharacterized conser 78.6 1.4 3E-05 42.1 2.1 55 165-219 17-81 (293)
108 KOG1100 Predicted E3 ubiquitin 77.5 0.79 1.7E-05 42.3 0.2 37 171-218 161-198 (207)
109 KOG1829 Uncharacterized conser 76.6 0.82 1.8E-05 48.2 0.1 42 167-215 510-556 (580)
110 PF03854 zf-P11: P-11 zinc fin 74.3 0.89 1.9E-05 32.6 -0.3 41 170-219 4-45 (50)
111 KOG0825 PHD Zn-finger protein 73.8 2.2 4.9E-05 46.4 2.4 51 167-217 95-151 (1134)
112 KOG3113 Uncharacterized conser 72.6 2.1 4.6E-05 40.8 1.7 51 167-223 110-161 (293)
113 PF02891 zf-MIZ: MIZ/SP-RING z 71.4 2.8 6E-05 30.0 1.7 46 169-217 3-49 (50)
114 KOG4718 Non-SMC (structural ma 70.2 1.1 2.4E-05 41.6 -0.7 44 167-216 180-223 (235)
115 COG5183 SSM4 Protein involved 70.1 3.1 6.7E-05 45.5 2.4 49 167-218 11-64 (1175)
116 KOG1815 Predicted E3 ubiquitin 69.6 2.5 5.5E-05 43.0 1.6 38 166-205 68-105 (444)
117 KOG2066 Vacuolar assembly/sort 65.9 2.3 4.9E-05 46.2 0.4 45 167-216 783-831 (846)
118 KOG3899 Uncharacterized conser 65.8 3.9 8.5E-05 39.8 2.0 33 189-221 325-366 (381)
119 PF04710 Pellino: Pellino; In 64.3 2.2 4.8E-05 43.0 0.0 54 168-221 328-402 (416)
120 KOG0269 WD40 repeat-containing 64.0 5.3 0.00011 43.3 2.7 44 169-217 780-825 (839)
121 COG5220 TFB3 Cdk activating ki 63.7 3.8 8.3E-05 38.9 1.4 47 167-216 9-60 (314)
122 PLN02189 cellulose synthase 63.0 6.2 0.00013 44.3 3.1 52 166-220 32-87 (1040)
123 KOG4362 Transcriptional regula 62.5 2.1 4.6E-05 45.9 -0.5 47 167-217 20-66 (684)
124 PLN02436 cellulose synthase A 60.2 7.4 0.00016 43.9 3.1 52 166-220 34-89 (1094)
125 PF14569 zf-UDP: Zinc-binding 59.7 8.5 0.00019 30.4 2.5 51 166-219 7-61 (80)
126 PLN02638 cellulose synthase A 59.6 8.1 0.00017 43.6 3.3 52 166-220 15-70 (1079)
127 KOG1609 Protein involved in mR 59.3 4.4 9.6E-05 38.3 1.1 51 167-219 77-133 (323)
128 KOG3842 Adaptor protein Pellin 58.4 8.2 0.00018 38.1 2.7 51 167-217 340-411 (429)
129 COG5109 Uncharacterized conser 57.1 7.2 0.00016 38.4 2.1 50 167-217 335-384 (396)
130 PLN02915 cellulose synthase A 52.6 13 0.00028 42.0 3.4 52 166-220 13-68 (1044)
131 KOG3579 Predicted E3 ubiquitin 52.2 6.9 0.00015 38.0 1.1 35 167-204 267-305 (352)
132 KOG3799 Rab3 effector RIM1 and 51.9 1.7 3.7E-05 37.8 -2.7 54 166-219 63-117 (169)
133 PF13901 DUF4206: Domain of un 50.4 7.5 0.00016 35.5 1.0 41 167-216 151-196 (202)
134 PLN02195 cellulose synthase A 50.1 15 0.00033 41.1 3.4 51 167-220 5-59 (977)
135 KOG2068 MOT2 transcription fac 49.8 10 0.00022 37.4 1.9 47 168-219 249-297 (327)
136 PLN02400 cellulose synthase 48.3 13 0.00028 42.1 2.6 52 166-220 34-89 (1085)
137 PF06906 DUF1272: Protein of u 47.0 19 0.00042 26.7 2.5 45 169-220 6-52 (57)
138 COG3813 Uncharacterized protei 46.5 15 0.00032 28.8 1.9 43 170-219 7-51 (84)
139 PF10497 zf-4CXXC_R1: Zinc-fin 46.4 24 0.00052 29.1 3.3 50 167-217 6-69 (105)
140 KOG4185 Predicted E3 ubiquitin 45.4 4.7 0.0001 38.3 -1.1 48 168-218 207-265 (296)
141 KOG2462 C2H2-type Zn-finger pr 44.2 11 0.00024 36.4 1.1 59 167-225 160-231 (279)
142 PF04710 Pellino: Pellino; In 43.8 7.7 0.00017 39.2 0.0 49 168-219 277-338 (416)
143 PF00628 PHD: PHD-finger; Int 43.7 7.8 0.00017 26.9 0.0 47 170-216 1-49 (51)
144 PF05605 zf-Di19: Drought indu 43.5 11 0.00024 26.9 0.8 38 168-217 2-39 (54)
145 cd00350 rubredoxin_like Rubred 42.1 12 0.00026 24.3 0.7 10 209-218 17-26 (33)
146 PF01363 FYVE: FYVE zinc finge 40.8 10 0.00022 28.1 0.2 37 166-202 7-44 (69)
147 PF06844 DUF1244: Protein of u 36.7 22 0.00049 27.2 1.5 13 192-204 11-23 (68)
148 cd00065 FYVE FYVE domain; Zinc 34.6 25 0.00054 24.8 1.5 35 169-203 3-38 (57)
149 smart00064 FYVE Protein presen 33.1 33 0.00071 25.2 2.0 38 167-204 9-47 (68)
150 KOG2169 Zn-finger transcriptio 32.9 50 0.0011 35.5 4.0 47 169-220 307-356 (636)
151 KOG4218 Nuclear hormone recept 32.8 14 0.0003 37.0 -0.2 52 167-219 14-77 (475)
152 cd04718 BAH_plant_2 BAH, or Br 31.0 11 0.00023 33.3 -1.2 26 193-218 2-27 (148)
153 KOG4443 Putative transcription 30.8 25 0.00054 37.8 1.3 51 167-217 17-70 (694)
154 PF13765 PRY: SPRY-associated 30.2 34 0.00074 23.9 1.6 30 247-276 1-30 (49)
155 PF10571 UPF0547: Uncharacteri 30.1 26 0.00055 21.8 0.8 10 170-179 2-11 (26)
156 KOG2071 mRNA cleavage and poly 30.0 29 0.00062 36.8 1.6 35 166-200 511-555 (579)
157 KOG1812 Predicted E3 ubiquitin 27.9 31 0.00067 34.7 1.4 44 168-215 306-351 (384)
158 KOG1245 Chromatin remodeling c 26.9 26 0.00056 41.0 0.7 56 164-219 1104-1159(1404)
159 KOG1356 Putative transcription 26.1 14 0.00031 40.6 -1.4 35 167-202 228-262 (889)
160 KOG2231 Predicted E3 ubiquitin 26.1 46 0.00099 36.0 2.3 46 170-218 2-50 (669)
161 PF07975 C1_4: TFIIH C1-like d 25.9 32 0.00068 25.0 0.7 42 171-216 2-50 (51)
162 PF07191 zinc-ribbons_6: zinc- 25.9 5.7 0.00012 30.7 -3.3 39 169-219 2-40 (70)
163 smart00647 IBR In Between Ring 25.8 12 0.00025 26.8 -1.6 14 188-201 45-58 (64)
164 KOG3005 GIY-YIG type nuclease 24.7 40 0.00087 32.5 1.4 57 169-226 183-248 (276)
165 KOG2113 Predicted RNA binding 24.5 44 0.00096 33.1 1.7 43 167-218 342-385 (394)
166 KOG3726 Uncharacterized conser 24.2 38 0.00082 36.6 1.3 42 168-216 654-696 (717)
167 KOG0802 E3 ubiquitin ligase [P 23.5 40 0.00086 35.3 1.3 40 167-217 478-517 (543)
168 PF04216 FdhE: Protein involve 23.5 12 0.00026 35.8 -2.3 43 167-217 171-219 (290)
169 PF04423 Rad50_zn_hook: Rad50 22.8 32 0.0007 24.5 0.3 25 198-222 9-33 (54)
170 KOG0824 Predicted E3 ubiquitin 22.8 27 0.00058 34.3 -0.1 46 167-218 104-149 (324)
171 PF13717 zinc_ribbon_4: zinc-r 21.9 44 0.00095 22.2 0.8 11 169-179 3-13 (36)
172 PF07649 C1_3: C1-like domain; 21.8 52 0.0011 20.6 1.1 29 170-198 2-30 (30)
173 TIGR00622 ssl1 transcription f 21.8 86 0.0019 26.4 2.7 44 169-216 56-110 (112)
174 PF09986 DUF2225: Uncharacteri 21.7 47 0.001 30.6 1.2 13 167-179 4-16 (214)
175 KOG2807 RNA polymerase II tran 21.6 57 0.0012 32.5 1.8 45 168-216 330-374 (378)
176 KOG2979 Protein involved in DN 21.4 48 0.001 31.8 1.2 44 168-215 176-219 (262)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.35 E-value=2.8e-13 Score=94.11 Aligned_cols=44 Identities=30% Similarity=0.831 Sum_probs=37.8
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
..|+||++.|..+..+..|+|||.||.+||.+|+.. ...||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 369999999986677778999999999999999988 66999996
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9.6e-12 Score=121.06 Aligned_cols=47 Identities=26% Similarity=0.702 Sum_probs=42.6
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
..|+||+|.|..++.+++|||+|.||..||+.||.+. ...||+|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 4999999999999999999999999999999999873 4579999863
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.12 E-value=2.4e-11 Score=84.24 Aligned_cols=42 Identities=36% Similarity=0.773 Sum_probs=32.3
Q ss_pred ccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 171 C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
|+||+++|. +|+. |+|||+||..||..|+...+.....||+|
T Consensus 1 CpiC~~~~~-~Pv~--l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVS--LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE---SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-Cccc--cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 8888 99999999999999987654434689998
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.09 E-value=6.2e-11 Score=91.48 Aligned_cols=46 Identities=26% Similarity=0.848 Sum_probs=35.2
Q ss_pred CCccccccccccc----------cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS----------ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 167 ~~~~C~ICle~~~----------~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.+..|+||++.|. +.-.+...+|||.||..||.+|+.. ..+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 4556999999994 1123344679999999999999987 66999997
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.95 E-value=3.6e-10 Score=105.48 Aligned_cols=50 Identities=20% Similarity=0.614 Sum_probs=40.0
Q ss_pred CCccccccccccccccc----cEE-eccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCV----VAV-LTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~v----v~~-LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+..|+||++.+.+.++ +++ ++|||.||.+||.+|+.. ..+||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCEee
Confidence 46789999998874432 233 469999999999999976 779999998654
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.92 E-value=9.1e-10 Score=99.48 Aligned_cols=51 Identities=29% Similarity=0.614 Sum_probs=41.2
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhc------------CCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI------------NKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~------------~~~~~~CPvCr~~~~ 220 (323)
+...|+||++.++ ++++ ++|||+||+.||..|+... .+....||+||..+.
T Consensus 17 ~~~~CpICld~~~-dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVR-DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCC-CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 6688999999988 6766 7899999999999998531 123568999998654
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.90 E-value=1.5e-09 Score=79.97 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=39.5
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
..|+||.+.+. .+++ ++|||+|+..||.+|+.. ...||+|+....
T Consensus 2 ~~Cpi~~~~~~-~Pv~--~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK-DPVI--LPSGQTYERRAIEKWLLS----HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC-CCEE--CCCCCEEeHHHHHHHHHH----CCCCCCCcCCCC
Confidence 57999999999 6766 899999999999999987 668999997663
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8.4e-10 Score=104.41 Aligned_cols=48 Identities=23% Similarity=0.572 Sum_probs=40.7
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
....|.|||+.-. .+-. +||||+||+.||..|+.+ ...||+||..+..
T Consensus 238 a~~kC~LCLe~~~-~pSa--TpCGHiFCWsCI~~w~~e----k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 238 ATRKCSLCLENRS-NPSA--TPCGHIFCWSCILEWCSE----KAECPLCREKFQP 285 (293)
T ss_pred CCCceEEEecCCC-CCCc--CcCcchHHHHHHHHHHcc----ccCCCcccccCCC
Confidence 4578999999976 5655 899999999999999988 6679999986643
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.9e-10 Score=101.46 Aligned_cols=56 Identities=29% Similarity=0.522 Sum_probs=43.9
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC--ccchHhH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE--KKTHKLS 226 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~--~~~~~L~ 226 (323)
....|.|||+.-+ ++|+ ..|||.||+-||.+||+.. .....||+|+..+ ..+.+|+
T Consensus 46 ~~FdCNICLd~ak-dPVv--TlCGHLFCWpClyqWl~~~-~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAK-DPVV--TLCGHLFCWPCLYQWLQTR-PNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccC-CCEE--eecccceehHHHHHHHhhc-CCCeeCCccccccccceEEeee
Confidence 5678999999987 8887 7899999999999999863 2367899998743 3334444
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.87 E-value=8.4e-10 Score=74.86 Aligned_cols=39 Identities=38% Similarity=0.956 Sum_probs=31.6
Q ss_pred ccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 171 C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
|+||++.+. .+ +.+++|||.||.+||.+|++. ...||+|
T Consensus 1 C~iC~~~~~-~~-~~~~~CGH~fC~~C~~~~~~~----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-DP-VVVTPCGHSFCKECIEKYLEK----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-SE-EEECTTSEEEEHHHHHHHHHC----TSB-TTT
T ss_pred CCCCCCccc-Cc-CEECCCCCchhHHHHHHHHHC----cCCCcCC
Confidence 899999988 44 234899999999999999987 5689998
No 11
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.1e-09 Score=104.71 Aligned_cols=49 Identities=29% Similarity=0.655 Sum_probs=40.1
Q ss_pred CCCcccccccccccccc----------ccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELC----------VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~----------vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
.++..|.||++++-..+ ....|||||++|.+|+..|+++ ..+||+||.+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER----qQTCPICr~p 343 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER----QQTCPICRRP 343 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh----ccCCCcccCc
Confidence 47889999999954222 1234999999999999999998 7799999986
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=4.2e-09 Score=104.75 Aligned_cols=48 Identities=21% Similarity=0.740 Sum_probs=41.4
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
....|+||++.|. .+++ ++|||.||..||..|+.. ...||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~-~Pvi--tpCgH~FCs~CI~~~l~~----~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFD-VPVL--TSCSHTFCSLCIRRCLSN----QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhh-CccC--CCCCCchhHHHHHHHHhC----CCCCCCCCCcccc
Confidence 5678999999998 7776 899999999999999976 5589999987543
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.80 E-value=2.3e-09 Score=76.39 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=37.2
Q ss_pred CCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
++..|.||++... . +..+||||. ||..|+..|+.. ...||+||.++.
T Consensus 1 ~~~~C~iC~~~~~-~--~~~~pCgH~~~C~~C~~~~~~~----~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPR-D--VVLLPCGHLCFCEECAERLLKR----KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBS-S--EEEETTCEEEEEHHHHHHHHHT----TSBBTTTTBB-S
T ss_pred CcCCCccCCccCC-c--eEEeCCCChHHHHHHhHHhccc----CCCCCcCChhhc
Confidence 3568999999866 3 344899999 999999999985 779999998764
No 14
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.1e-09 Score=100.43 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=43.8
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
....|+||++.|...+.+++|||.|.||..|++.|+.. +...||+||.+.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~---y~~~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG---YSNKCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh---hcccCCccCCCC
Confidence 44689999999987888899999999999999999974 477899999765
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.70 E-value=1.5e-08 Score=68.30 Aligned_cols=44 Identities=25% Similarity=0.724 Sum_probs=34.6
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
.|+||++.+. .+ +.+++|||.||..|+..|+.. ....||+|+..
T Consensus 1 ~C~iC~~~~~-~~-~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR-EP-VVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh-Cc-eEecCCCChhcHHHHHHHHHh---CcCCCCCCCCc
Confidence 4999999984 33 333569999999999999976 25579999864
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.70 E-value=1e-08 Score=81.40 Aligned_cols=51 Identities=22% Similarity=0.550 Sum_probs=38.0
Q ss_pred CCccccccccccc-----------cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS-----------ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~-----------~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
+++.|+||...|. +-+++ .-.|+|.||..||.+|+.... ....||+||...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCSHNFHMHCILKWLSTQS-SKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCcee-eccCccHHHHHHHHHHHcccc-CCCCCCCcCCee
Confidence 4677888888887 11222 236999999999999998632 257999999865
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.68 E-value=9.8e-09 Score=69.81 Aligned_cols=41 Identities=32% Similarity=0.766 Sum_probs=34.0
Q ss_pred ccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 171 C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
|+||++.+. .++ .+++|||.||..||.+|+... ....||+|
T Consensus 1 C~iC~~~~~-~~~-~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE-DPV-ILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS-SEE-EETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCcccc-CCC-EEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 899999988 444 348999999999999999852 26679998
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.66 E-value=1.4e-08 Score=93.31 Aligned_cols=56 Identities=18% Similarity=0.560 Sum_probs=40.1
Q ss_pred CCccccccccccccc-----cccEEe-ccCCcchhHHHHHHHHhcC--CCCCCCCCCCCCCccc
Q 020624 167 DMQTCGVCSKLLSEL-----CVVAVL-TCGHLYHADCLENITAEIN--KYDPACPVCTLGEKKT 222 (323)
Q Consensus 167 ~~~~C~ICle~~~~~-----~vv~~L-pCgH~Fh~~CI~~Wl~~~~--~~~~~CPvCr~~~~~~ 222 (323)
.+..|+||+|..-+. ...++| +|+|.||..||..|..... .....||+||..+...
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 568899999986322 123445 6999999999999997521 1245799999876533
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.61 E-value=2.3e-08 Score=69.62 Aligned_cols=44 Identities=27% Similarity=0.787 Sum_probs=35.6
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.|+||.+.|.......+++|||+||..||..+... ...||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 49999999953445566899999999999998722 668999974
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.56 E-value=4.9e-08 Score=63.44 Aligned_cols=39 Identities=31% Similarity=0.818 Sum_probs=31.3
Q ss_pred ccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 171 C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
|+||++... .. .+++|||.||..|+..|+.. ....||+|
T Consensus 1 C~iC~~~~~-~~--~~~~C~H~~c~~C~~~~~~~---~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-DP--VVLPCGHTFCRSCIRKWLKS---GNNTCPIC 39 (39)
T ss_pred CCcCccCCC-Cc--EEecCCChHHHHHHHHHHHh---CcCCCCCC
Confidence 889998844 33 44899999999999999973 15679998
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.8e-08 Score=87.63 Aligned_cols=46 Identities=24% Similarity=0.689 Sum_probs=37.5
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
....|+|||+.+.... .....|||+||..||..-+.. ...||+|++
T Consensus 130 ~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~----~~~CP~C~k 175 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKN----TNKCPTCRK 175 (187)
T ss_pred cccCCCceecchhhcc-ccccccchhHHHHHHHHHHHh----CCCCCCccc
Confidence 4467999999998333 222689999999999999887 678999996
No 22
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.54 E-value=4.5e-08 Score=94.59 Aligned_cols=48 Identities=23% Similarity=0.778 Sum_probs=42.7
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
+..+|.||.++|. .+++ +||||.||.-||..+|.. .+.||.|++++..
T Consensus 22 ~lLRC~IC~eyf~-ip~i--tpCsHtfCSlCIR~~L~~----~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMI--TPCSHTFCSLCIRKFLSY----KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhc-Ccee--ccccchHHHHHHHHHhcc----CCCCCceecccch
Confidence 5678999999999 7776 899999999999999987 8899999987654
No 23
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.52 E-value=4.3e-08 Score=68.46 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=22.2
Q ss_pred cccccccccc-ccccEEeccCCcchhHHHHHHHHhcCCCCCCCC
Q 020624 171 CGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAEINKYDPACP 213 (323)
Q Consensus 171 C~ICle~~~~-~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CP 213 (323)
|+||.+ |.. .....+|+|||+||.+||++++.........||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 752 223344999999999999999986433355676
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.7e-08 Score=101.02 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=40.3
Q ss_pred CCccccccccccccccc--cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCV--VAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~v--v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
....|.||+|.+...+. ...|+|||+||..|+..|+++ ..+||+||.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er----~qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER----QQTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH----hCcCCcchh
Confidence 47899999999985422 345999999999999999998 779999997
No 25
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.50 E-value=7e-08 Score=74.26 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=45.6
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEMES 236 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~~~~l~~e~~~ 236 (323)
+.+.|+||.+.+. +||+ ++|||+|...||+.|+.. ....||+|+.........-+..|++.++.
T Consensus 3 ~~f~CpIt~~lM~-dPVi--~~~G~tyer~~I~~~l~~---~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~ 66 (73)
T PF04564_consen 3 DEFLCPITGELMR-DPVI--LPSGHTYERSAIERWLEQ---NGGTDPFTRQPLSESDLIPNRALKSAIEE 66 (73)
T ss_dssp GGGB-TTTSSB-S-SEEE--ETTSEEEEHHHHHHHHCT---TSSB-TTT-SB-SGGGSEE-HHHHHHHHH
T ss_pred cccCCcCcCcHhh-Ccee--CCcCCEEcHHHHHHHHHc---CCCCCCCCCCcCCcccceECHHHHHHHHH
Confidence 6789999999999 8888 899999999999999976 26799999887665443334555555443
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.7e-07 Score=83.43 Aligned_cols=45 Identities=31% Similarity=0.659 Sum_probs=38.4
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.+...|+||++.|. .+++ |+|||.||..||..++. ....||.||.
T Consensus 11 ~~~~~C~iC~~~~~-~p~~--l~C~H~~c~~C~~~~~~----~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFR-EPVL--LPCGHNFCRACLTRSWE----GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhh-cCcc--ccccchHhHHHHHHhcC----CCcCCcccCC
Confidence 37889999999999 5544 99999999999999776 2578999994
No 27
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.24 E-value=4.2e-07 Score=86.47 Aligned_cols=47 Identities=30% Similarity=0.689 Sum_probs=40.8
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
....|-||-+.|. .++. .+|||.||.-||...|.. .+.||+||+++.
T Consensus 24 s~lrC~IC~~~i~-ip~~--TtCgHtFCslCIR~hL~~----qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRIS-IPCE--TTCGHTFCSLCIRRHLGT----QPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheee-ccee--cccccchhHHHHHHHhcC----CCCCccccccHH
Confidence 3468999999998 6666 799999999999999987 889999998644
No 28
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=1.5e-06 Score=83.84 Aligned_cols=52 Identities=23% Similarity=0.458 Sum_probs=36.3
Q ss_pred CCCccccccccccccccc--cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCV--VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~v--v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
+++..|+||...--..+. ..+.+|||.||..||+..+... ...||+|+....
T Consensus 1 md~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~---~~~CP~C~~~lr 54 (309)
T TIGR00570 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---SGSCPECDTPLR 54 (309)
T ss_pred CCCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC---CCCCCCCCCccc
Confidence 366789999985221232 2223799999999999966442 458999987543
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.2e-07 Score=84.29 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=38.3
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHH-HHHhcCCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLEN-ITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~-Wl~~~~~~~~~CPvCr~~~ 219 (323)
..+..|.||++... .+.. ++|||+||+.||-. |..+. ..-||+||+..
T Consensus 213 ~~d~kC~lC~e~~~-~ps~--t~CgHlFC~~Cl~~~~t~~k---~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPE-VPSC--TPCGHLFCLSCLLISWTKKK---YEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccC-Cccc--ccccchhhHHHHHHHHHhhc---cccCchhhhhc
Confidence 35778999999866 5544 89999999999999 98762 33499999754
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.1e-06 Score=88.88 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=36.9
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhc-CCCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTLGE 219 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~-~~~~~~CPvCr~~~ 219 (323)
+..|+||++... -++. +.|||+||..||-++|... .+.-..||+|+..+
T Consensus 186 ~~~CPICL~~~~-~p~~--t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPS-VPVR--TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCC-cccc--cccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 778999999866 3333 5699999999999966543 33456799998643
No 31
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.12 E-value=1.7e-06 Score=67.76 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=25.4
Q ss_pred ccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 188 TCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 188 pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.|.|.||..||.+||.. ...||+|++..
T Consensus 53 ~CnHaFH~HCI~rWL~T----k~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT----KGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhh----CCCCCCCCcee
Confidence 59999999999999988 77999999765
No 32
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.11 E-value=7.6e-07 Score=88.81 Aligned_cols=47 Identities=28% Similarity=0.762 Sum_probs=38.3
Q ss_pred CCCccccccccccccccccEE--eccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAV--LTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~--LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.+..+|+||||.+. ..+.++ +.|-|.||..|+..|.- .+||+||+-.
T Consensus 173 tELPTCpVCLERMD-~s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q 221 (493)
T KOG0804|consen 173 TELPTCPVCLERMD-SSTTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQ 221 (493)
T ss_pred ccCCCcchhHhhcC-ccccceeeeecccccchHHHhhccc------CcChhhhhhc
Confidence 47889999999987 555444 45999999999999974 4899999743
No 33
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.7e-06 Score=66.11 Aligned_cols=50 Identities=26% Similarity=0.595 Sum_probs=37.0
Q ss_pred CCccccccccccc-----------cccccEEe-ccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS-----------ELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~-----------~~~vv~~L-pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.+++|.||.-.|. +-|.+ + .|.|.||..||.+|+..... ...||+||...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv--~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~ 80 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLV--WGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTW 80 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccH--HHHHHHHHHHHHHHHHhcCccc-cccCCcchhee
Confidence 3448888888887 12222 3 59999999999999975432 56899999765
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.84 E-value=1.6e-05 Score=56.86 Aligned_cols=44 Identities=25% Similarity=0.562 Sum_probs=33.3
Q ss_pred cccccccccccccccEEeccC-----CcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCG-----HLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCg-----H~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.|-||++... +....+.||. |.+|..|+.+|+.... ...||+|.
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 4899998433 3333457985 8999999999998754 45899994
No 35
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.2e-06 Score=78.41 Aligned_cols=51 Identities=22% Similarity=0.554 Sum_probs=40.3
Q ss_pred CCCcccccccccccccc-------ccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELC-------VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~-------vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
.++-.|+||-..+.... .+-.|.|+|+||..||..|..-.+ .++||.|+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK--kqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK--KQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC--CCCCchHHHH
Confidence 47789999998876222 345689999999999999986544 6799999753
No 36
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=7.2e-06 Score=80.74 Aligned_cols=49 Identities=24% Similarity=0.685 Sum_probs=35.5
Q ss_pred CccccccccccccccccEEec-cCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~Lp-CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
...|.||.+.+-....++.+. |||+||..|+.+|+..... ...||+|+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps-~R~cpic~i 53 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS-NRGCPICQI 53 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCc-cCCCCceee
Confidence 356999966655333444444 9999999999999976432 248999983
No 37
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.68 E-value=1.2e-05 Score=60.75 Aligned_cols=49 Identities=22% Similarity=0.648 Sum_probs=24.8
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 223 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~ 223 (323)
+...|++|.+.|. .|+. .-.|.|+||..||..-+. .-||+|..+.+...
T Consensus 6 ~lLrCs~C~~~l~-~pv~-l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 6 ELLRCSICFDILK-EPVC-LGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQD 54 (65)
T ss_dssp HTTS-SSS-S--S-S-B----SSS--B-TTTGGGGTT------TB-SSS--B-S-SS
T ss_pred HhcCCcHHHHHhc-CCce-eccCccHHHHHHhHHhcC------CCCCCcCChHHHHH
Confidence 4568999999998 6654 246999999999977443 35999987765443
No 38
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.8e-05 Score=79.99 Aligned_cols=50 Identities=24% Similarity=0.616 Sum_probs=36.9
Q ss_pred CCccccccccccc---ccc--c---------cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS---ELC--V---------VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~---~~~--v---------v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
....|+||+.... .+. . ..+.||.|+||..|+++|+.. ++..||+||.+.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~---ykl~CPvCR~pL 633 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT---YKLICPVCRCPL 633 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh---hcccCCccCCCC
Confidence 3457999998765 110 1 223699999999999999974 255899999765
No 39
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.3e-05 Score=64.32 Aligned_cols=49 Identities=24% Similarity=0.628 Sum_probs=35.3
Q ss_pred CCCccccccccccc--------------cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLS--------------ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~--------------~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
+..+.|+||...+- +.-+++=-.|.|.||..||.+||+. ...||+|.+.
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt----r~vCPLdn~e 106 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT----RNVCPLDNKE 106 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh----cCcCCCcCcc
Confidence 46677888875543 1112222359999999999999998 7799999754
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.62 E-value=1.1e-05 Score=84.96 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=47.0
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLS 226 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~ 226 (323)
....|+||+.-+.+..+....+|+|.||.+||..|... ..+||+||..|.++..+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~----aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC----AQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh----cccCchhhhhhheeeeec
Confidence 45679999999886777767789999999999999987 669999998877666544
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=1e-05 Score=78.83 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=37.5
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
-+..|+|||+.++ ..+. +--|+|.||.+||..-+... ...||.||+
T Consensus 42 ~~v~c~icl~llk-~tmt-tkeClhrfc~~ci~~a~r~g---n~ecptcRk 87 (381)
T KOG0311|consen 42 IQVICPICLSLLK-KTMT-TKECLHRFCFDCIWKALRSG---NNECPTCRK 87 (381)
T ss_pred hhhccHHHHHHHH-hhcc-cHHHHHHHHHHHHHHHHHhc---CCCCchHHh
Confidence 5678999999998 4443 23599999999999977764 679999996
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=9.9e-05 Score=73.29 Aligned_cols=50 Identities=28% Similarity=0.654 Sum_probs=38.5
Q ss_pred CCccccccccccccc--cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSEL--CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~--~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
...+|+||++.+.-. .....|.|||.|-.+||+.|+- ++....||.|.-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~--k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG--KKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh--hhhhhhCcccCCh
Confidence 456899999998721 2233477999999999999994 4557789999643
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=6.2e-05 Score=79.53 Aligned_cols=48 Identities=23% Similarity=0.661 Sum_probs=38.6
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
+-..|++|-.-++ +.++ +.|||+||..||+.-+... ...||.|..+|.
T Consensus 642 ~~LkCs~Cn~R~K-d~vI--~kC~H~FC~~Cvq~r~etR---qRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK-DAVI--TKCGHVFCEECVQTRYETR---QRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchh-hHHH--HhcchHHHHHHHHHHHHHh---cCCCCCCCCCCC
Confidence 4578999998877 4444 6799999999999988663 558999987664
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=8.8e-05 Score=72.94 Aligned_cols=54 Identities=20% Similarity=0.639 Sum_probs=40.8
Q ss_pred CCCccccccccccccccc-----cEEec-cCCcchhHHHHHHHHhcC---CCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCV-----VAVLT-CGHLYHADCLENITAEIN---KYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~v-----v~~Lp-CgH~Fh~~CI~~Wl~~~~---~~~~~CPvCr~~~~ 220 (323)
..+..|.||++... ... .++|| |.|.||..||..|-...+ +-...||+||....
T Consensus 159 s~~k~CGICme~i~-ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETIN-EKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhcc-ccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 36789999999977 333 45566 999999999999985432 22468999997543
No 45
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.38 E-value=5.2e-05 Score=58.12 Aligned_cols=52 Identities=25% Similarity=0.489 Sum_probs=23.2
Q ss_pred Cccccccccccc-cc--cccEE--eccCCcchhHHHHHHHHhcCCC----C---CCCCCCCCCC
Q 020624 168 MQTCGVCSKLLS-EL--CVVAV--LTCGHLYHADCLENITAEINKY----D---PACPVCTLGE 219 (323)
Q Consensus 168 ~~~C~ICle~~~-~~--~vv~~--LpCgH~Fh~~CI~~Wl~~~~~~----~---~~CPvCr~~~ 219 (323)
+..|+||...+. .+ +++.- -.|++.||..||.+|+...... . ..||.|+.+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 457999998865 22 22222 2599999999999999863221 1 2499998654
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00014 Score=69.82 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=39.3
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
.-...|.||+..-. -++. |+|+|.||..||+.-.... ...|++||.++...
T Consensus 5 ~~~~eC~IC~nt~n-~Pv~--l~C~HkFCyiCiKGsy~nd---k~~CavCR~pids~ 55 (324)
T KOG0824|consen 5 TKKKECLICYNTGN-CPVN--LYCFHKFCYICIKGSYKND---KKTCAVCRFPIDST 55 (324)
T ss_pred ccCCcceeeeccCC-cCcc--ccccchhhhhhhcchhhcC---CCCCceecCCCCcc
Confidence 35667999998866 5655 9999999999999844432 45799999986544
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00014 Score=72.87 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=42.2
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 223 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~ 223 (323)
.+..|.||...|. .+++ +||||.||..||++-+.. ...||.||.++....
T Consensus 83 sef~c~vc~~~l~-~pv~--tpcghs~c~~Cl~r~ld~----~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 83 SEFECCVCSRALY-PPVV--TPCGHSFCLECLDRSLDQ----ETECPLCRDELVELP 132 (398)
T ss_pred chhhhhhhHhhcC-CCcc--ccccccccHHHHHHHhcc----CCCCcccccccccch
Confidence 6788999999988 7777 799999999999996654 778999998766533
No 48
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.27 E-value=0.00011 Score=79.02 Aligned_cols=51 Identities=25% Similarity=0.576 Sum_probs=39.0
Q ss_pred CCccccccccccc----cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS----ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~----~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
....|+||...+. ..|-.+.-.|.|-||..|+..|+.... ...||+||..+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRsei 1522 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEI 1522 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCcccccc
Confidence 5578999998876 122233345899999999999998755 77999999654
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.12 E-value=0.00013 Score=72.44 Aligned_cols=53 Identities=26% Similarity=0.567 Sum_probs=40.5
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhH
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLS 226 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~ 226 (323)
+.|-||-|.=+ .+.+-||||..|..|+..|....+ ...||.||...+-+..++
T Consensus 370 eLCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 370 ELCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHHhhccCC---CcccccccchHHHHHHHhhcccCC--CCCCCceeeEecccccee
Confidence 57999998733 344569999999999999986543 679999998766555443
No 50
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00039 Score=68.09 Aligned_cols=47 Identities=26% Similarity=0.594 Sum_probs=36.7
Q ss_pred CccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
...|.||+..-. +.+ +|||.|. .|..|.+..--. .+.||+||.++..
T Consensus 290 gkeCVIClse~r-dt~--vLPCRHLCLCs~Ca~~Lr~q----~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESR-DTV--VLPCRHLCLCSGCAKSLRYQ----TNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCc-ceE--EecchhhehhHhHHHHHHHh----hcCCCccccchHh
Confidence 578999999866 444 4999998 699999885433 5589999987743
No 51
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.93 E-value=0.00063 Score=66.07 Aligned_cols=52 Identities=27% Similarity=0.592 Sum_probs=41.8
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 223 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~ 223 (323)
....+|.+|..+|.+...+ .-|=|.||..||-..|.. ...||.|.....+..
T Consensus 13 n~~itC~LC~GYliDATTI--~eCLHTFCkSCivk~l~~----~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTI--TECLHTFCKSCIVKYLEE----SKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceeecchhH--HHHHHHHHHHHHHHHHHH----hccCCccceeccCcc
Confidence 3678999999999844433 679999999999999988 779999986544443
No 52
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00026 Score=51.92 Aligned_cols=50 Identities=26% Similarity=0.572 Sum_probs=36.2
Q ss_pred ccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 224 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~ 224 (323)
..|.||.|.-. +.|+ -.|||. .|.+|-.+.+.. ....||+||++.+...+
T Consensus 8 dECTICye~pv-dsVl--YtCGHMCmCy~Cg~rl~~~---~~g~CPiCRapi~dvIk 58 (62)
T KOG4172|consen 8 DECTICYEHPV-DSVL--YTCGHMCMCYACGLRLKKA---LHGCCPICRAPIKDVIK 58 (62)
T ss_pred cceeeeccCcc-hHHH--HHcchHHhHHHHHHHHHHc---cCCcCcchhhHHHHHHH
Confidence 67999998744 3444 469997 789998774442 16799999987765544
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.82 E-value=0.0004 Score=68.83 Aligned_cols=48 Identities=27% Similarity=0.712 Sum_probs=38.6
Q ss_pred CCccccccccccccc-cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 167 ~~~~C~ICle~~~~~-~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
-+..|..|-+.+-.. .....|||.|+||..|+.+.|.+.. ..+||-||
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG--TRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC--CCCCccHH
Confidence 457899999987633 3445699999999999999996644 66999998
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.75 E-value=0.00055 Score=50.55 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=29.0
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPV 214 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPv 214 (323)
-...|+|.+..|+ .|+. -..|||+|-.+.|.+|+... ....||+
T Consensus 10 ~~~~CPiT~~~~~-~PV~-s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE-DPVK-SKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S-SEEE-ESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred eccCCCCcCChhh-CCcC-cCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 5678999999999 6665 34799999999999999432 2667998
No 55
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.75 E-value=0.00078 Score=61.47 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=40.4
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHK 224 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~ 224 (323)
...|.||-+.|. .+|+ ..|||.||..|...-.+. ...|-+|-+...-..+
T Consensus 196 PF~C~iCKkdy~-spvv--t~CGH~FC~~Cai~~y~k----g~~C~~Cgk~t~G~f~ 245 (259)
T COG5152 196 PFLCGICKKDYE-SPVV--TECGHSFCSLCAIRKYQK----GDECGVCGKATYGRFW 245 (259)
T ss_pred ceeehhchhhcc-chhh--hhcchhHHHHHHHHHhcc----CCcceecchhhcccee
Confidence 468999999999 7887 789999999998886665 6789999765444433
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.71 E-value=0.00085 Score=67.15 Aligned_cols=49 Identities=31% Similarity=0.608 Sum_probs=40.4
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||...+. +++.. +.|||.||..|+..|+.. +..||.|+....
T Consensus 19 ~~~l~C~~C~~vl~-~p~~~-~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 19 DENLLCPICMSVLR-DPVQT-TTCGHRFCAGCLLESLSN----HQKCPVCRQELT 67 (391)
T ss_pred cccccCcccccccc-CCCCC-CCCCCcccccccchhhcc----CcCCcccccccc
Confidence 36689999999998 55442 589999999999999987 779999986543
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0017 Score=61.78 Aligned_cols=55 Identities=25% Similarity=0.509 Sum_probs=39.7
Q ss_pred ccCCCCCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 161 SASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 161 s~s~~~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
+.+......+|++|.+.=+ .|.+ +.+|||+||.-||..=..... ..+||.|-...
T Consensus 232 sss~~t~~~~C~~Cg~~Pt-iP~~-~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPT-IPHV-IGKCGHIYCYYCIATSRLWDA--SFTCPLCGENV 286 (298)
T ss_pred ccccccCCceeeccCCCCC-CCee-eccccceeehhhhhhhhcchh--hcccCccCCCC
Confidence 3344457889999998855 5544 357999999999998443322 57999997544
No 58
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.44 E-value=0.00093 Score=53.66 Aligned_cols=32 Identities=38% Similarity=0.882 Sum_probs=28.0
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLE 199 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~ 199 (323)
+...|+||-..|. ..+..+.||||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~-~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLG-NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCC-CceEEEeCCCeEEeccccc
Confidence 5678999999998 5777788999999999975
No 59
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0047 Score=61.73 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=51.1
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHh----cCCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHhh
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE----INKYDPACPVCTLGEKKTHKLSERALKSEMESKARN 240 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~----~~~~~~~CPvCr~~~~~~~~L~~~~l~~e~~~k~r~ 240 (323)
....|.||.+..........|||+|+||..|+..++.. .....-.||-|.-+....+-.++.++.+++-.+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKelvg~EL~arYe~ 260 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKELVGDELFARYEK 260 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHHHHHHHHHHHHH
Confidence 34679999999883355556899999999999997653 112245699888766555556666666666554433
No 60
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0024 Score=61.33 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=41.7
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhH
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLS 226 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~ 226 (323)
.+.|-||.+.|. .||+ ..|||.||..|...-++. ...|++|-+.........
T Consensus 241 Pf~c~icr~~f~-~pVv--t~c~h~fc~~ca~~~~qk----~~~c~vC~~~t~g~~~~a 292 (313)
T KOG1813|consen 241 PFKCFICRKYFY-RPVV--TKCGHYFCEVCALKPYQK----GEKCYVCSQQTHGSFNVA 292 (313)
T ss_pred Cccccccccccc-cchh--hcCCceeehhhhcccccc----CCcceecccccccccchH
Confidence 356999999999 8888 889999999998887766 678999987655444433
No 61
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.23 E-value=0.0012 Score=63.48 Aligned_cols=53 Identities=25% Similarity=0.516 Sum_probs=40.9
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhc-------------------CCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI-------------------NKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~-------------------~~~~~~CPvCr~~ 218 (323)
.-...|.|||--|.+.+...+++|-|.||..|+.++|..- ......||+||..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~ 184 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRER 184 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhh
Confidence 3456799999999988878889999999999998765421 1124479999974
No 62
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0034 Score=59.09 Aligned_cols=51 Identities=27% Similarity=0.418 Sum_probs=41.6
Q ss_pred CCccccccccccccccccEEe-ccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~L-pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
....|+||.+.|++....++| +|||+|+.+|++..+.. +..||+|-.+.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~----D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK----DMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc----cccccCCCCcCcc
Confidence 556799999999955555556 69999999999998877 7899999766543
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.09 E-value=0.0062 Score=58.78 Aligned_cols=45 Identities=27% Similarity=0.634 Sum_probs=36.0
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.+.|+.|-.++. .++.. --|||.||.+||..-|... +..||.|..
T Consensus 274 ~LkCplc~~Llr-np~kT-~cC~~~fc~eci~~al~ds---Df~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLR-NPMKT-PCCGHTFCDECIGTALLDS---DFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhh-CcccC-ccccchHHHHHHhhhhhhc---cccCCCccc
Confidence 378999999988 56551 3499999999999976653 789999964
No 64
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.08 E-value=0.011 Score=66.74 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=38.4
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCC------CCCCCCCCCCCCccc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINK------YDPACPVCTLGEKKT 222 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~------~~~~CPvCr~~~~~~ 222 (323)
.++.|.||..+--.......|.|+|+||..|...-|+..=. .--.||+|.......
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 56789999855332333446899999999999887765210 012699998776544
No 65
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0044 Score=60.92 Aligned_cols=44 Identities=27% Similarity=0.583 Sum_probs=32.0
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
....|.||++... .- ..+||||..| |+.--.. .+.||+||....
T Consensus 304 ~p~lcVVcl~e~~-~~--~fvpcGh~cc--ct~cs~~-----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK-SA--VFVPCGHVCC--CTLCSKH-----LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCcc-ce--eeecCCcEEE--chHHHhh-----CCCCchhHHHHH
Confidence 5578999999977 33 3489999977 7655322 556999986543
No 66
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.40 E-value=0.0092 Score=57.17 Aligned_cols=56 Identities=27% Similarity=0.634 Sum_probs=42.2
Q ss_pred CCcccccccccccc-ccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhHH
Q 020624 167 DMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSE 227 (323)
Q Consensus 167 ~~~~C~ICle~~~~-~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~~ 227 (323)
....|+||.+.+.. .+.+.+++|||.-|..|.+..... ..+||+|.+ ...+..+.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~----~y~CP~C~~-~~d~~~~~~ 213 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE----GYTCPICSK-PGDMSHYFR 213 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc----CCCCCcccc-hHHHHHHHH
Confidence 44559999988762 345556999999999999887766 589999988 655555543
No 67
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.23 E-value=0.015 Score=54.95 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=38.8
Q ss_pred CCCccccccccccccc-cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 166 VDMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~-~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
.....|||+...|... ..+.+.+|||+|...||.+.- . ...||+|-.++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~----~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K----SKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c----cccccccCCcccc
Confidence 3678999999999633 344445899999999999973 2 5579999877553
No 68
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.16 E-value=0.01 Score=61.08 Aligned_cols=49 Identities=22% Similarity=0.650 Sum_probs=38.7
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhc-CCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~-~~~~~~CPvCr~~ 218 (323)
++..|.+|-+.-+ +.++ ..|.|.||.-||.++.... ....-+||+|-.+
T Consensus 535 ~~~~C~lc~d~ae-d~i~--s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~ 584 (791)
T KOG1002|consen 535 GEVECGLCHDPAE-DYIE--SSCHHKFCRLCIKEYVESFMENNNVTCPVCHIG 584 (791)
T ss_pred CceeecccCChhh-hhHh--hhhhHHHHHHHHHHHHHhhhcccCCCCcccccc
Confidence 5678999999876 5655 7899999999999987642 2336799999754
No 69
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.15 E-value=0.021 Score=56.07 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=33.3
Q ss_pred CCCccccccccccccccc-cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~v-v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
.+++.|+.|+|.+.-.+. .---+||...|.-|....-+. ....||-||..
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~---lngrcpacrr~ 62 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN---LNGRCPACRRK 62 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh---ccCCChHhhhh
Confidence 356679999998762221 111368988888887664333 36689999863
No 70
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.95 E-value=0.021 Score=40.43 Aligned_cols=42 Identities=26% Similarity=0.564 Sum_probs=27.2
Q ss_pred ccccccccccccccEEeccCC-----cchhHHHHHHHHhcCCCCCCCCCC
Q 020624 171 CGVCSKLLSELCVVAVLTCGH-----LYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 171 C~ICle~~~~~~vv~~LpCgH-----~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
|-||++.-.+.. .-+.||+- ..|..|+.+|+.... ...|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 679998866444 23367753 569999999998744 5679988
No 71
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.04 Score=51.42 Aligned_cols=59 Identities=25% Similarity=0.470 Sum_probs=43.1
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhc----CCCCCCCCCCCCCCccchHhH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI----NKYDPACPVCTLGEKKTHKLS 226 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~----~~~~~~CPvCr~~~~~~~~L~ 226 (323)
....|..|-..+..++.+ .|.|=|+||+.|+.+|...- ......||.|..++-....++
T Consensus 49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlv 111 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLV 111 (299)
T ss_pred CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcccc
Confidence 456799999888856544 48899999999999997652 123567999987654443333
No 72
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.037 Score=52.72 Aligned_cols=49 Identities=24% Similarity=0.605 Sum_probs=38.6
Q ss_pred Cccccccccccccc---cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSEL---CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 168 ~~~C~ICle~~~~~---~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
...|-||-++|... .+.++|.|||.+|..|+...+... ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~---~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS---RILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCc---eeeccCCCCcc
Confidence 35699999999833 345668999999999998877552 56799999875
No 73
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.77 E-value=0.014 Score=41.87 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=21.4
Q ss_pred ccccccccccccccEEec--cCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 171 CGVCSKLLSELCVVAVLT--CGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 171 C~ICle~~~~~~vv~~Lp--CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
|++|.+.+. ......+| ||+-.|..|...-+.. ....||-||.++
T Consensus 1 cp~C~e~~d-~~d~~~~PC~Cgf~IC~~C~~~i~~~---~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELD-ETDKDFYPCECGFQICRFCYHDILEN---EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----HHHHHHHTTS---S-SB-TTT--B-
T ss_pred CCCcccccc-cCCCccccCcCCCcHHHHHHHHHHhc---cCCCCCCCCCCC
Confidence 789999985 33333455 8999999998886642 267899999764
No 74
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.024 Score=61.08 Aligned_cols=44 Identities=36% Similarity=0.868 Sum_probs=33.9
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
....|..|--.+. .|.|- ..|||.||.+|++. . ...||-|+...
T Consensus 839 q~skCs~C~~~Ld-lP~Vh-F~CgHsyHqhC~e~---~----~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLD-LPFVH-FLCGHSYHQHCLED---K----EDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccc-cceee-eecccHHHHHhhcc---C----cccCCccchhh
Confidence 3468999998888 66553 56999999999982 2 56899998643
No 75
>PHA03096 p28-like protein; Provisional
Probab=94.68 E-value=0.018 Score=55.44 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=34.8
Q ss_pred cccccccccccccc----ccEEec-cCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELC----VVAVLT-CGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 169 ~~C~ICle~~~~~~----vv~~Lp-CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
..|.||++.....+ .-++|+ |-|.||..||..|-.+.. ...+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh-hcccCccccc
Confidence 67999999865322 234575 999999999999987643 3456776664
No 76
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.34 E-value=0.044 Score=48.55 Aligned_cols=47 Identities=21% Similarity=0.534 Sum_probs=35.3
Q ss_pred CCCccccccccccccccccEEeccCC-----cchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGH-----LYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH-----~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
..+..|=||.+... +.. -||.. .-|.+|+++|+...+ ...|++|..+
T Consensus 6 ~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~ 57 (162)
T PHA02825 6 LMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGP 57 (162)
T ss_pred CCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCe
Confidence 46778999998843 222 47665 449999999998653 7789999864
No 77
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.20 E-value=0.02 Score=49.35 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=27.7
Q ss_pred CccccccccccccccccEEeccC------CcchhHHHHHHHHh
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCG------HLYHADCLENITAE 204 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCg------H~Fh~~CI~~Wl~~ 204 (323)
...|.||++.+.+...+..++|| |.||.+|+.+|-..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 45699999998862333345676 89999999999543
No 78
>PHA02862 5L protein; Provisional
Probab=94.18 E-value=0.037 Score=48.35 Aligned_cols=46 Identities=17% Similarity=0.447 Sum_probs=34.6
Q ss_pred ccccccccccccccccEEeccCC-----cchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGH-----LYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH-----~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
..|=||.+.-. +.+ -||.. .-|.+|+.+|+...+ ...|++|+.++.
T Consensus 3 diCWIC~~~~~--e~~--~PC~C~GS~K~VHq~CL~~WIn~S~--k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCD--ERN--NFCGCNEEYKVVHIKCMQLWINYSK--KKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCC--CCc--ccccccCcchhHHHHHHHHHHhcCC--CcCccCCCCeEE
Confidence 57999998843 223 57764 689999999997643 679999997653
No 79
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.14 E-value=0.18 Score=54.61 Aligned_cols=54 Identities=20% Similarity=0.517 Sum_probs=38.6
Q ss_pred CCCcccccccccccccccc-EEeccCCcchhHHHHHHHHhcCC---CCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVV-AVLTCGHLYHADCLENITAEINK---YDPACPVCTLGE 219 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv-~~LpCgH~Fh~~CI~~Wl~~~~~---~~~~CPvCr~~~ 219 (323)
.+...|.||.+.+.....+ .--.|=|+||..||..|....++ ....||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3677899999998744333 11236699999999999876432 356799997433
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.60 E-value=0.022 Score=53.36 Aligned_cols=44 Identities=23% Similarity=0.626 Sum_probs=31.1
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
-..|..|...=. .....++.|+|+||..|...-. ...||+|++.
T Consensus 3 ~VhCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~------~~~C~lCkk~ 46 (233)
T KOG4739|consen 3 FVHCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS------PDVCPLCKKS 46 (233)
T ss_pred eEEeccccccCC-CCceeeeechhhhhhhhcccCC------ccccccccce
Confidence 346887765533 4455567899999999975532 2389999874
No 81
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.045 Score=54.08 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=38.2
Q ss_pred CCCCCCccccccccccccccccEE-eccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 163 SSSVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 163 s~~~~~~~C~ICle~~~~~~vv~~-LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.+..++..|+||..- ++.++ .||+|.-|..||.+.+.. .+.|=.|+...
T Consensus 417 lp~sEd~lCpICyA~----pi~Avf~PC~H~SC~~CI~qHlmN----~k~CFfCktTv 466 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAG----PINAVFAPCSHRSCYGCITQHLMN----CKRCFFCKTTV 466 (489)
T ss_pred CCCcccccCcceecc----cchhhccCCCCchHHHHHHHHHhc----CCeeeEeccee
Confidence 345688999999743 44443 589999999999999887 67899997544
No 82
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.01 Score=57.13 Aligned_cols=41 Identities=29% Similarity=0.733 Sum_probs=31.0
Q ss_pred CccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
...|.||++.-. +-+. |+|||. -|..|-.. -..||+||+-.
T Consensus 300 ~~LC~ICmDaP~-DCvf--LeCGHmVtCt~CGkr--------m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPR-DCVF--LECGHMVTCTKCGKR--------MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCc-ceEE--eecCcEEeehhhccc--------cccCchHHHHH
Confidence 678999998855 4555 899996 68888655 33799998633
No 83
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.076 Score=47.99 Aligned_cols=53 Identities=23% Similarity=0.555 Sum_probs=36.4
Q ss_pred CCccccccccccccccc----cEEeccCCcchhHHHHHHHHhcC--CC-----CCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCV----VAVLTCGHLYHADCLENITAEIN--KY-----DPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~v----v~~LpCgH~Fh~~CI~~Wl~~~~--~~-----~~~CPvCr~~~ 219 (323)
+...|.||..+--++.. ---+.||..||.-|+..||...- +. -..||.|..+.
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 55679999876433322 22367999999999999997521 11 13599998764
No 84
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.018 Score=57.29 Aligned_cols=53 Identities=23% Similarity=0.415 Sum_probs=41.1
Q ss_pred CCccccccccccccc-cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 020624 167 DMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 223 (323)
Q Consensus 167 ~~~~C~ICle~~~~~-~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~ 223 (323)
-...|.||.+.|+.. .....+.|||.||.+||.+||.. ...||-|+.......
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~----~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT----KRKLPSCRRELPKNG 248 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH----HHHhHHHHhhhhhhh
Confidence 346799999998844 44445789999999999999987 447999987654443
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.92 E-value=0.039 Score=58.99 Aligned_cols=45 Identities=24% Similarity=0.701 Sum_probs=34.6
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
..|.||++ .. ..++ ..|||.||.+|+..-+.... ...||+||...
T Consensus 455 ~~c~ic~~-~~-~~~i--t~c~h~~c~~c~~~~i~~~~--~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LD-SFFI--TRCGHDFCVECLKKSIQQSE--NAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cc-ccee--ecccchHHHHHHHhcccccc--CCCCcHHHHHH
Confidence 78999999 33 4444 78999999999999665543 44799998643
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.89 E-value=0.044 Score=40.28 Aligned_cols=44 Identities=30% Similarity=0.569 Sum_probs=31.1
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
....|-.|... ..+-.+++|||+-|..|..-+- -+.||+|-.++
T Consensus 6 ~~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~r------YngCPfC~~~~ 49 (55)
T PF14447_consen 6 PEQPCVFCGFV---GTKGTVLPCGHLICDNCFPGER------YNGCPFCGTPF 49 (55)
T ss_pred cceeEEEcccc---ccccccccccceeeccccChhh------ccCCCCCCCcc
Confidence 45567777655 2333448999999999976643 45799997655
No 87
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.043 Score=57.77 Aligned_cols=44 Identities=27% Similarity=0.621 Sum_probs=33.8
Q ss_pred CCccccccccccc---cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS---ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~---~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
+...|.||+..|. ..++. |.|||+.|..|++.-. +.+|| |.+..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvs--l~cghtic~~c~~~ly------n~scp-~~~De 56 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVS--LQCGHTICGHCVQLLY------NASCP-TKRDE 56 (861)
T ss_pred HHhhchHHHHHHHHHhcCccc--ccccchHHHHHHHhHh------hccCC-CCccc
Confidence 5678999988876 23555 8899999999998854 44899 76643
No 88
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.087 Score=51.54 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=35.9
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
+...|+||+..-. .|.+ ...-|.+||..||...+.+ ...||+=-.+
T Consensus 299 ~~~~CpvClk~r~-Nptv-l~vSGyVfCY~Ci~~Yv~~----~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQ-NPTV-LEVSGYVFCYPCIFSYVVN----YGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccC-CCce-EEecceEEeHHHHHHHHHh----cCCCCccCCc
Confidence 6678999998866 3433 1346999999999999987 7789996544
No 89
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.039 Score=49.13 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=26.7
Q ss_pred CCccccccccccccccccEEeccCCcchh
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHA 195 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~ 195 (323)
+...|.||||+|..++.++.|||=.+||.
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 66789999999999999999999999996
No 90
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.04 E-value=0.23 Score=43.98 Aligned_cols=56 Identities=27% Similarity=0.527 Sum_probs=36.3
Q ss_pred CCccccccccccccccccEEecc------------CCc-chhHHHHHHHHhcCC--------------------------
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTC------------GHL-YHADCLENITAEINK-------------------------- 207 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpC------------gH~-Fh~~CI~~Wl~~~~~-------------------------- 207 (323)
|+.+|+||+|.=- ..|+ |-| +-. -|..|++++-+...+
T Consensus 1 ed~~CpICme~PH-NAVL--LlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEHPH-NAVL--LLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccCCC-ceEE--EEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 4678999998744 3333 444 433 378999997653211
Q ss_pred -CCCCCCCCCCCCccchHh
Q 020624 208 -YDPACPVCTLGEKKTHKL 225 (323)
Q Consensus 208 -~~~~CPvCr~~~~~~~~L 225 (323)
....||+||..++.+...
T Consensus 78 ~~~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 78 QPELACPLCRGEVKGWTVV 96 (162)
T ss_pred cccccCccccCceeceEEc
Confidence 135799999887766543
No 91
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.03 E-value=0.07 Score=57.95 Aligned_cols=36 Identities=31% Similarity=0.682 Sum_probs=29.0
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITA 203 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~ 203 (323)
-+..|.+|...|. .....+.+|||.||++||.+-..
T Consensus 816 p~d~C~~C~~~ll-~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLL-IKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhh-cCcceeeeccchHHHHHHHHHHH
Confidence 5688999998887 33444579999999999998554
No 92
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.37 E-value=0.16 Score=50.24 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=35.3
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHH--HHhcCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI--TAEINKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~W--l~~~~~~~~~CPvCr~~ 218 (323)
.+...|.||-+-++ -+.++||+|..|.-|.-+. |-. ...||+||..
T Consensus 59 Een~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~----~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYM----QKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHh----ccCCCccccc
Confidence 46789999998866 2355899999999998762 333 5689999864
No 93
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.28 E-value=0.19 Score=48.89 Aligned_cols=46 Identities=33% Similarity=0.738 Sum_probs=35.4
Q ss_pred CCCccccccccccccccccEEecc--CCcchhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTC--GHLYHADCLENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpC--gH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
.+.+.|+||.+.+. .|+ ..| ||+-|..|-.+- ...||.||.+....
T Consensus 46 ~~lleCPvC~~~l~-~Pi---~QC~nGHlaCssC~~~~-------~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS-PPI---FQCDNGHLACSSCRTKV-------SNKCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCc-ccc---eecCCCcEehhhhhhhh-------cccCCccccccccH
Confidence 37788999999988 443 467 799999996532 55799999887644
No 94
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=90.98 E-value=0.092 Score=53.20 Aligned_cols=35 Identities=26% Similarity=0.599 Sum_probs=30.4
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHh
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE 204 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~ 204 (323)
++..|+||...|. .|++ |+|||..|..|...-+..
T Consensus 3 eelkc~vc~~f~~-epii--l~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYR-EPII--LPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhcc-CceE--eecccHHHHHHHHhhccc
Confidence 6789999999998 8877 999999999999875543
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=0.13 Score=50.03 Aligned_cols=40 Identities=23% Similarity=0.762 Sum_probs=26.3
Q ss_pred cccccccccccccccc-EEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVV-AVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv-~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
-.|--|-.-+. +. +.+||.|+||.+|... .. ++.||.|.-
T Consensus 91 HfCd~Cd~PI~---IYGRmIPCkHvFCl~CAr~--~~----dK~Cp~C~d 131 (389)
T KOG2932|consen 91 HFCDRCDFPIA---IYGRMIPCKHVFCLECARS--DS----DKICPLCDD 131 (389)
T ss_pred EeecccCCcce---eeecccccchhhhhhhhhc--Cc----cccCcCccc
Confidence 34666643322 11 3479999999999754 11 679999964
No 96
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.87 E-value=0.12 Score=58.15 Aligned_cols=45 Identities=24% Similarity=0.571 Sum_probs=37.7
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
+...|.||++.+.... ++..|||.+|..|+..|+.. ...||+|..
T Consensus 1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~----~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYA----SSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHH----hccCcchhh
Confidence 5568999999988333 33689999999999999988 779999974
No 97
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.61 E-value=0.14 Score=35.58 Aligned_cols=43 Identities=23% Similarity=0.668 Sum_probs=22.2
Q ss_pred ccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 171 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 171 C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
|.+|-++...+..=..-.|+=.+|..|++.++.... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 678888876333221124888999999999886632 3479988
No 98
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.64 E-value=0.41 Score=47.93 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=38.0
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
...|||=.+.-.+.+....|.|||+-+.+-|.+..... .....||.|-.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng-~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNG-SQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCC-CeeeeCCCCCc
Confidence 46899987776666666679999999999999976553 22578999964
No 99
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.57 E-value=1.2 Score=44.48 Aligned_cols=55 Identities=18% Similarity=0.394 Sum_probs=35.6
Q ss_pred CCCCccccccccccccccccEE----------------eccCC-----cchhHHHHHHHHhcCCC---------CCCCCC
Q 020624 165 SVDMQTCGVCSKLLSELCVVAV----------------LTCGH-----LYHADCLENITAEINKY---------DPACPV 214 (323)
Q Consensus 165 ~~~~~~C~ICle~~~~~~vv~~----------------LpCgH-----~Fh~~CI~~Wl~~~~~~---------~~~CPv 214 (323)
..+.+.|--|+..-. .+.-. -+|+. ..|.+|+-+|+...+.. +-.||.
T Consensus 268 ~~e~e~CigC~~~~~--~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPt 345 (358)
T PF10272_consen 268 GQELEPCIGCMQAQP--NVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPT 345 (358)
T ss_pred ccccCCccccccCCC--CcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCC
Confidence 357888999987532 11100 12333 34889999999875522 347999
Q ss_pred CCCCCcc
Q 020624 215 CTLGEKK 221 (323)
Q Consensus 215 Cr~~~~~ 221 (323)
||+.+..
T Consensus 346 CRa~FCi 352 (358)
T PF10272_consen 346 CRAKFCI 352 (358)
T ss_pred Cccccee
Confidence 9998764
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.43 E-value=0.79 Score=44.31 Aligned_cols=45 Identities=22% Similarity=0.556 Sum_probs=32.1
Q ss_pred cccccccc-cccccc-cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 170 TCGVCSKL-LSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 170 ~C~ICle~-~~~~~v-v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.|++|... |....+ ..+-+|||.-|..|++..+... ...||.|..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g---~~~CpeC~~ 48 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG---PAQCPECMV 48 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC---CCCCCcccc
Confidence 58999854 332232 2233799999999999977653 668999975
No 101
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.61 E-value=0.63 Score=40.21 Aligned_cols=52 Identities=27% Similarity=0.556 Sum_probs=37.8
Q ss_pred CCccccccccccccccccEEe-c---cCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 167 DMQTCGVCSKLLSELCVVAVL-T---CGHLYHADCLENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~L-p---CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
..-.|.||.|.-. +... | | ||..-|..|--..|+... ..+.||+|+..++..
T Consensus 79 ~lYeCnIC~etS~-ee~F--LKPneCCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSA-EERF--LKPNECCGYSICNACYANLWKFCN-LYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccc-hhhc--CCcccccchHHHHHHHHHHHHHcc-cCCCCCccccccccc
Confidence 4567999999866 3222 3 2 999999999888544322 478999999887644
No 102
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=85.91 E-value=0.67 Score=34.03 Aligned_cols=34 Identities=35% Similarity=0.717 Sum_probs=25.6
Q ss_pred CCcccccccccccc-ccccEEeccCCcchhHHHHH
Q 020624 167 DMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLEN 200 (323)
Q Consensus 167 ~~~~C~ICle~~~~-~~vv~~LpCgH~Fh~~CI~~ 200 (323)
....|.+|-+.|++ +++|.--.||-.||++|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45679999999963 44443345999999999654
No 103
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.39 E-value=1 Score=48.73 Aligned_cols=24 Identities=33% Similarity=0.739 Sum_probs=20.2
Q ss_pred eccCCcchhHHHHHHHHhcCCCCCCCCC
Q 020624 187 LTCGHLYHADCLENITAEINKYDPACPV 214 (323)
Q Consensus 187 LpCgH~Fh~~CI~~Wl~~~~~~~~~CPv 214 (323)
..|||+-|..|..+|+.. ...||-
T Consensus 1046 g~C~Hv~H~sc~~eWf~~----gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRT----GDVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhc----CCcCCC
Confidence 569999999999999987 447774
No 105
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.83 E-value=1.4 Score=41.92 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHh
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE 204 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~ 204 (323)
+-.+|+.||..+. +||+ .+=||+|+.+||-+++..
T Consensus 42 ~FdcCsLtLqPc~-dPvi--t~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCR-DPVI--TPDGYLFDREAILEYILA 76 (303)
T ss_pred Ccceeeeeccccc-CCcc--CCCCeeeeHHHHHHHHHH
Confidence 5678999999998 8888 789999999999996643
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=1 Score=45.20 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=32.1
Q ss_pred CCccccccc-cccccccccEEeccCCcchhHHHHHHHHhcC--CCCCCCCC
Q 020624 167 DMQTCGVCS-KLLSELCVVAVLTCGHLYHADCLENITAEIN--KYDPACPV 214 (323)
Q Consensus 167 ~~~~C~ICl-e~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~--~~~~~CPv 214 (323)
....|.||. +.........++.|+|.||.+|+.+.+.... .....||.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 467899999 4444323333567999999999999876431 22445643
No 107
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.56 E-value=1.4 Score=42.09 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=38.2
Q ss_pred CCCCcccccccccccccccc-EEeccC-----CcchhHHHHHHHHhcCCC----CCCCCCCCCCC
Q 020624 165 SVDMQTCGVCSKLLSELCVV-AVLTCG-----HLYHADCLENITAEINKY----DPACPVCTLGE 219 (323)
Q Consensus 165 ~~~~~~C~ICle~~~~~~vv-~~LpCg-----H~Fh~~CI~~Wl~~~~~~----~~~CPvCr~~~ 219 (323)
.+.+..|-||...=++.... -+-||. |--|..||..|..+++.. .-.||.|+.++
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 34678899999775533322 234763 678999999999886542 23699998653
No 108
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=0.79 Score=42.28 Aligned_cols=37 Identities=32% Similarity=0.698 Sum_probs=25.8
Q ss_pred ccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 171 CGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 171 C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
|-+|-+. .-.+..|||.|. +|..|-.. ...||+|+..
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~--------~~~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES--------LRICPICRSP 198 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc--------CccCCCCcCh
Confidence 8888766 233556899976 77888543 3469999754
No 109
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=76.62 E-value=0.82 Score=48.19 Aligned_cols=42 Identities=26% Similarity=0.678 Sum_probs=27.8
Q ss_pred CCccccccccc-----cccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 167 DMQTCGVCSKL-----LSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 167 ~~~~C~ICle~-----~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
....|.||... |....+.+-..||++||..|+.. . .+.||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~----s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---K----SPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---c----CCCCCch
Confidence 44677888432 22233445567999999999755 2 4459999
No 110
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=74.25 E-value=0.89 Score=32.62 Aligned_cols=41 Identities=22% Similarity=0.601 Sum_probs=24.3
Q ss_pred cccccccccccccccEEeccC-CcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.|--|+-..+ ..+.|. |..|..|+...+.. ...||+|..+.
T Consensus 4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~----s~~C~iC~~~L 45 (50)
T PF03854_consen 4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSR----SDRCPICGKPL 45 (50)
T ss_dssp ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SS----SSEETTTTEE-
T ss_pred cChhhhhcCC-----CeeeecchhHHHHHHHHHhcc----ccCCCcccCcC
Confidence 4666764433 235787 99999999999877 67899998654
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.76 E-value=2.2 Score=46.36 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=36.1
Q ss_pred CCccccccccccccc-cccEEec---cCCcchhHHHHHHHHhc--CCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSEL-CVVAVLT---CGHLYHADCLENITAEI--NKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~-~vv~~Lp---CgH~Fh~~CI~~Wl~~~--~~~~~~CPvCr~ 217 (323)
+..+|.||...|... +-..+++ |+|.||..||..|.... ....-.|++|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 567899999888841 1122345 99999999999998753 223456788865
No 112
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.62 E-value=2.1 Score=40.82 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=35.0
Q ss_pred CCccccccccccccccccEE-eccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 020624 167 DMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 223 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~-LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~ 223 (323)
....|+|---.+...-.... -+|||+|-...+.+.- ..+|++|-+.+....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik------as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK------ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh------hccccccCCcccccC
Confidence 45679987766663333333 4799999999888753 448999987654433
No 113
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=71.44 E-value=2.8 Score=29.97 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=21.6
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhc-CCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTL 217 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~-~~~~~~CPvCr~ 217 (323)
..|+|....+. .|+ +...|.|.-|.+ ++.|+... ......||+|.+
T Consensus 3 L~CPls~~~i~-~P~-Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIR-IPV-RGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-S-SEE-EETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEE-eCc-cCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 46999888877 443 445799997655 44555432 223568999975
No 114
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=70.17 E-value=1.1 Score=41.62 Aligned_cols=44 Identities=23% Similarity=0.674 Sum_probs=33.1
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
+...|.+|-.+.- ..++.-.||=-||..|++..+++ ...||.|.
T Consensus 180 nlk~Cn~Ch~LvI--qg~rCg~c~i~~h~~c~qty~q~----~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVI--QGIRCGSCNIQYHRGCIQTYLQR----RDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhh--eeeccCcccchhhhHHHHHHhcc----cCcCCchh
Confidence 4568999998855 22222356677999999999988 67899993
No 115
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=70.11 E-value=3.1 Score=45.46 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=35.3
Q ss_pred CCccccccccccccccccEEeccCC-----cchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGH-----LYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH-----~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
|...|-||..+-..++.. --||.+ -.|.+|+-+|+.-.. ...|-+|.++
T Consensus 11 d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~ 64 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYE 64 (1175)
T ss_pred cchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCC--Ccceeeecce
Confidence 668999999765433332 146754 379999999997543 6689999874
No 116
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.59 E-value=2.5 Score=42.99 Aligned_cols=38 Identities=21% Similarity=0.501 Sum_probs=30.5
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI 205 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~ 205 (323)
.....|.||.+.+.. ....+.|||.||..|+...+...
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 356789999999873 34447899999999999988753
No 117
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.88 E-value=2.3 Score=46.22 Aligned_cols=45 Identities=29% Similarity=0.588 Sum_probs=31.4
Q ss_pred CCccccccccccc-cc---cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS-EL---CVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 167 ~~~~C~ICle~~~-~~---~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.+..|.-|.+..- .+ ..+.++.|||+||..|+..-..+ . .|-.|-
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~----~-~~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR----N-ACNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh----c-ccChhh
Confidence 4458999987743 11 34567899999999999886554 2 266664
No 118
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.79 E-value=3.9 Score=39.84 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=24.6
Q ss_pred cCCcchhHHHHHHHHhcCC---------CCCCCCCCCCCCcc
Q 020624 189 CGHLYHADCLENITAEINK---------YDPACPVCTLGEKK 221 (323)
Q Consensus 189 CgH~Fh~~CI~~Wl~~~~~---------~~~~CPvCr~~~~~ 221 (323)
|.-..|.+|+.+|+...+. .+-.||.||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 5567789999999876442 24579999987653
No 119
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=64.32 E-value=2.2 Score=43.00 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=0.0
Q ss_pred Cccccccccccc----------------cccccEEeccCCcchhHHHHHHHHhcC-----CCCCCCCCCCCCCcc
Q 020624 168 MQTCGVCSKLLS----------------ELCVVAVLTCGHLYHADCLENITAEIN-----KYDPACPVCTLGEKK 221 (323)
Q Consensus 168 ~~~C~ICle~~~----------------~~~vv~~LpCgH~Fh~~CI~~Wl~~~~-----~~~~~CPvCr~~~~~ 221 (323)
...|++|+..-. ..+..+.-||||+.-.....-|-+-.- .....||.|-.....
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 678999997522 113334469999988888888875421 224689999766543
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.97 E-value=5.3 Score=43.35 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=30.6
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCC--CCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPV--CTL 217 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPv--Cr~ 217 (323)
..|.+|-..+. +-.+-.-.|||.-|.+|+.+|+.. ...||. |-.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~----~s~ca~~~C~~ 825 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFK----ASPCAKSICPH 825 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhc----CCCCccccCCc
Confidence 46888876655 222222349999999999999987 556765 643
No 121
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=63.67 E-value=3.8 Score=38.91 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=34.0
Q ss_pred CCccccccccccccccccEEe--c-cCCcchhHHHHHHHHhcCCCCCCCC--CCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVL--T-CGHLYHADCLENITAEINKYDPACP--VCT 216 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~L--p-CgH~Fh~~CI~~Wl~~~~~~~~~CP--vCr 216 (323)
.+..|+||..+--..|.+..| | |=|..|..|+++.+... ...|| -|-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G---pAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG---PAQCPYKGCG 60 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC---CCCCCCccHH
Confidence 567899999663324444333 5 99999999999988763 45698 773
No 122
>PLN02189 cellulose synthase
Probab=63.04 E-value=6.2 Score=44.35 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=35.0
Q ss_pred CCCccccccccccc---cccc-cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~---~~~v-v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.....|.||-+.+. ++.. ++.-.||---|..|.+- -.++ .+..||.|+..++
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey-er~e--g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY-ERRE--GTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhc--CCccCcccCCchh
Confidence 35678999999965 2222 23334888899999954 2222 3779999987554
No 123
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=62.47 E-value=2.1 Score=45.90 Aligned_cols=47 Identities=19% Similarity=0.546 Sum_probs=35.8
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
-...|+||...+. .++. +.|-|.||..|+..-+.... ....||+|+.
T Consensus 20 k~lEc~ic~~~~~-~p~~--~kc~~~~l~~~~n~~f~~~~-~~~~~~lc~~ 66 (684)
T KOG4362|consen 20 KILECPICLEHVK-EPSL--LKCDHIFLKFCLNKLFESKK-GPKQCALCKS 66 (684)
T ss_pred hhccCCceeEEee-ccch--hhhhHHHHhhhhhceeeccC-ccccchhhhh
Confidence 4567999999988 5544 78999999999988554322 1567999984
No 124
>PLN02436 cellulose synthase A
Probab=60.18 E-value=7.4 Score=43.89 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=35.1
Q ss_pred CCCccccccccccc---cccc-cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~---~~~v-v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.....|.||-+... ++.. |+.--||---|..|.+- -.++ ....||.|+..++
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey-er~e--g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY-ERRE--GNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhc--CCccCcccCCchh
Confidence 36678999999964 2222 33334888899999954 2222 3779999987554
No 125
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=59.68 E-value=8.5 Score=30.38 Aligned_cols=51 Identities=25% Similarity=0.457 Sum_probs=21.7
Q ss_pred CCCccccccccccc---cccc-cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 166 ~~~~~C~ICle~~~---~~~v-v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.....|.||-+..- ++.+ ++.--|+-..|..|.+-=.++ ....||.|+..+
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke---g~q~CpqCkt~y 61 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE---GNQVCPQCKTRY 61 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT---S-SB-TTT--B-
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc---CcccccccCCCc
Confidence 46788999998865 2222 333458888999998764443 267999998655
No 126
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=59.61 E-value=8.1 Score=43.63 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=35.1
Q ss_pred CCCccccccccccc---ccc-ccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLS---ELC-VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~---~~~-vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.....|.||-++.. ++. -|+.--||---|..|.+- -.++ .+..||.|+..++
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY-Er~e--G~q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY-ERKD--GNQSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhh-hhhc--CCccCCccCCchh
Confidence 46678999999865 222 233345888899999844 2222 2779999986553
No 127
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=59.27 E-value=4.4 Score=38.28 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=34.9
Q ss_pred CCccccccccccccccc-cEEeccC-----CcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCV-VAVLTCG-----HLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~v-v~~LpCg-----H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
++..|-||.+....... .-..||. +..|..|++.|+...+ ...|.+|....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~ 133 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFF 133 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc--Ceeeecccccc
Confidence 35789999987542210 1225664 5579999999997533 77999997643
No 128
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=58.45 E-value=8.2 Score=38.10 Aligned_cols=51 Identities=20% Similarity=0.419 Sum_probs=33.2
Q ss_pred CCccccccccccc---------------cc-cccEEeccCCcchhHHHHHHHHhcC-----CCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS---------------EL-CVVAVLTCGHLYHADCLENITAEIN-----KYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~---------------~~-~vv~~LpCgH~Fh~~CI~~Wl~~~~-----~~~~~CPvCr~ 217 (323)
.+..|++|+.+=. .+ +..+.-||||+.-..=..-|-+..- ..+..||.|-.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~ 411 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCAT 411 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhh
Confidence 4678999997622 11 2233468999977766666865422 34678999964
No 129
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.10 E-value=7.2 Score=38.43 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=36.6
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
....|||--+.-++......|.|||+.-.+-+...-+. +.....||.|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~n-G~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQN-GVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhc-CcEEeeCCCCCc
Confidence 34689987777665555556999999999999886554 333678999954
No 130
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.58 E-value=13 Score=41.98 Aligned_cols=52 Identities=29% Similarity=0.531 Sum_probs=35.5
Q ss_pred CCCccccccccccc---ccc-ccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLS---ELC-VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~---~~~-vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
...+.|.||-+... ++. -|+.--|+---|..|.+- -.++ ....||.|+..++
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyey-e~~~--g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEY-ERSE--GNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhh-hhhc--CCccCCccCCchh
Confidence 46788999999865 222 233345888899999944 3232 2779999987654
No 131
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.19 E-value=6.9 Score=38.03 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=27.7
Q ss_pred CCccccccccccccccccEEecc----CCcchhHHHHHHHHh
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTC----GHLYHADCLENITAE 204 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpC----gH~Fh~~CI~~Wl~~ 204 (323)
..++|.+|.|.|+ +... +.| .|.||.-|-.+-++.
T Consensus 267 apLcCTLC~ERLE-DTHF--VQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLE-DTHF--VQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred Cceeehhhhhhhc-cCce--eecCCCcccceecccCHHHHHh
Confidence 5689999999998 3333 355 799999999997764
No 132
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.94 E-value=1.7 Score=37.79 Aligned_cols=54 Identities=26% Similarity=0.477 Sum_probs=28.6
Q ss_pred CCCcccccccccc-ccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLL-SELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 166 ~~~~~C~ICle~~-~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.++.+|.||+..- .++--....-|.-.||+.|--.-..+..+....|-+|+...
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 3788999999762 21111111123334555565543333334456788887543
No 133
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=50.43 E-value=7.5 Score=35.51 Aligned_cols=41 Identities=22% Similarity=0.647 Sum_probs=28.1
Q ss_pred CCccccccccc-----cccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKL-----LSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 167 ~~~~C~ICle~-----~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
-...|-||.+. |....++.--.|+-+||..|... ..||-|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcH
Confidence 56789999853 22223444456999999999752 2699994
No 134
>PLN02195 cellulose synthase A
Probab=50.14 E-value=15 Score=41.14 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=35.0
Q ss_pred CCccccccccccc---cc-cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLS---EL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~---~~-~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
....|.||-+... ++ +-++.-.||---|+.|.+- -.++ .+..||.|+..++
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyey-er~e--g~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEY-EIKE--GRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhh-hhhc--CCccCCccCCccc
Confidence 4568999999765 12 2234446888899999843 3332 3779999987665
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=49.75 E-value=10 Score=37.36 Aligned_cols=47 Identities=28% Similarity=0.528 Sum_probs=32.0
Q ss_pred CccccccccccccccccEEec--cCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLT--CGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~Lp--CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
...|+||.+... ......|| ||+.-|..|+..-... +..||.||.+.
T Consensus 249 ~~s~p~~~~~~~-~~d~~~lP~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLD-LTDSNFLPCPCGFRLCLFCHKTISDG----DGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCccc-ccccccccccccccchhhhhhccccc----CCCCCccCCcc
Confidence 368999999874 22222344 7887777777664443 77999999654
No 136
>PLN02400 cellulose synthase
Probab=48.31 E-value=13 Score=42.11 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=35.1
Q ss_pred CCCccccccccccc---cccc-cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~---~~~v-v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
...+.|.||-+... ++.. |+.--|+---|+.|.+- = .+.....||.|+..++
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-E--RkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-E--RKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-e--cccCCccCcccCCccc
Confidence 36678999999865 2222 33345888899999854 2 2223779999987654
No 137
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=46.98 E-value=19 Score=26.71 Aligned_cols=45 Identities=29% Similarity=0.539 Sum_probs=31.1
Q ss_pred ccccccccccccccccEEeccC--CcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 169 QTCGVCSKLLSELCVVAVLTCG--HLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCg--H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
..|-.|-..|..+...+ .-|. ..||.+|.+..|.. .||-|-..+.
T Consensus 6 pnCE~C~~dLp~~s~~A-~ICSfECTFC~~C~e~~l~~------~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEA-YICSFECTFCADCAETMLNG------VCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcc-eEEeEeCcccHHHHHHHhcC------cCcCCCCccc
Confidence 35778888877333222 3365 67999999998744 8999976553
No 138
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.52 E-value=15 Score=28.80 Aligned_cols=43 Identities=28% Similarity=0.534 Sum_probs=28.4
Q ss_pred cccccccccccccccEEecc--CCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTC--GHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpC--gH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.|--|-.+|-.+.. ..+-| .|.||.+|.+.-| ...||-|-...
T Consensus 7 nCECCDrDLpp~s~-dA~ICtfEcTFCadCae~~l------~g~CPnCGGel 51 (84)
T COG3813 7 NCECCDRDLPPDST-DARICTFECTFCADCAENRL------HGLCPNCGGEL 51 (84)
T ss_pred CCcccCCCCCCCCC-ceeEEEEeeehhHhHHHHhh------cCcCCCCCchh
Confidence 46667777662222 22346 4899999998866 44899996543
No 139
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=46.39 E-value=24 Score=29.09 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCccccccccccccccccEE------ecc---CCcchhHHHHHHHHhc-----CCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAV------LTC---GHLYHADCLENITAEI-----NKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~------LpC---gH~Fh~~CI~~Wl~~~-----~~~~~~CPvCr~ 217 (323)
....|..|...-. +..+.- ..| .=.||..||..+..+. ......||.||.
T Consensus 6 ~g~~CHqCrqKt~-~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTL-DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCC-CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 4566777776422 122111 235 6679999999876542 234678999974
No 140
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.43 E-value=4.7 Score=38.30 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=36.2
Q ss_pred Cccccccccccccc---cccEEec--------cCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSEL---CVVAVLT--------CGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 168 ~~~C~ICle~~~~~---~vv~~Lp--------CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
...|.||...|... .+..++. |||..|..|++.-+... ...||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~---~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA---GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh---hhcCCcccce
Confidence 36799999998822 2334466 99999999999977653 3689999863
No 141
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=44.18 E-value=11 Score=36.38 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=41.5
Q ss_pred CCcccccccccccccccc------EEeccCCcchhHHHHH-HHHhcCC------CCCCCCCCCCCCccchHh
Q 020624 167 DMQTCGVCSKLLSELCVV------AVLTCGHLYHADCLEN-ITAEINK------YDPACPVCTLGEKKTHKL 225 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv------~~LpCgH~Fh~~CI~~-Wl~~~~~------~~~~CPvCr~~~~~~~~L 225 (323)
-...|.+|-..|...+.. ..|+|...+|..-..+ ||.+... .-..||.|.+.|-++..|
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNL 231 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNL 231 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHH
Confidence 456899999998844321 2367877777777665 9987542 245799999988776654
No 142
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.77 E-value=7.7 Score=39.24 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=0.0
Q ss_pred Cccccccccccc-----------cccccEEeccCCcchhHHHHHHHHhcC--CCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLS-----------ELCVVAVLTCGHLYHADCLENITAEIN--KYDPACPVCTLGE 219 (323)
Q Consensus 168 ~~~C~ICle~~~-----------~~~vv~~LpCgH~Fh~~CI~~Wl~~~~--~~~~~CPvCr~~~ 219 (323)
...|+|=+..|. +...-..|.|||++-.+ .|-.... .....||+|+..-
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 456888766654 11111238899997764 5654322 1266899998643
No 143
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=43.67 E-value=7.8 Score=26.87 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=29.9
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHh--cCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE--INKYDPACPVCT 216 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~--~~~~~~~CPvCr 216 (323)
.|.||........++.=-.|+-.||..|+..-... .......||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 48899985443344322358899999999874331 112267888884
No 144
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=43.51 E-value=11 Score=26.95 Aligned_cols=38 Identities=29% Similarity=0.629 Sum_probs=21.0
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
...|+.|.+.|. .... +.| |.+.-... .....||+|..
T Consensus 2 ~f~CP~C~~~~~-~~~L----~~H-----~~~~H~~~--~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFS-ESSL----VEH-----CEDEHRSE--SKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccC-HHHH----HHH-----HHhHCcCC--CCCccCCCchh
Confidence 467999999655 2222 222 33332211 22568999975
No 145
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.08 E-value=12 Score=24.26 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q 020624 209 DPACPVCTLG 218 (323)
Q Consensus 209 ~~~CPvCr~~ 218 (323)
...||+|..+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 5689999764
No 146
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=40.78 E-value=10 Score=28.10 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=18.0
Q ss_pred CCCccccccccccccccccEE-eccCCcchhHHHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLENIT 202 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~-LpCgH~Fh~~CI~~Wl 202 (323)
.+...|.+|...|.-...-.. -.||++||..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 356789999999972221111 2499999999986543
No 147
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.66 E-value=22 Score=27.21 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=9.7
Q ss_pred cchhHHHHHHHHh
Q 020624 192 LYHADCLENITAE 204 (323)
Q Consensus 192 ~Fh~~CI~~Wl~~ 204 (323)
-||+.|+..|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999986
No 148
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.58 E-value=25 Score=24.81 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=24.2
Q ss_pred ccccccccccccccc-cEEeccCCcchhHHHHHHHH
Q 020624 169 QTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITA 203 (323)
Q Consensus 169 ~~C~ICle~~~~~~v-v~~LpCgH~Fh~~CI~~Wl~ 203 (323)
..|.+|...|..... ..--.||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 469999888773221 11135999999999887554
No 149
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=32.90 E-value=50 Score=35.47 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=26.0
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHH-HHHh--cCCCCCCCCCCCCCCc
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLEN-ITAE--INKYDPACPVCTLGEK 220 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~-Wl~~--~~~~~~~CPvCr~~~~ 220 (323)
+.|+|+...+. .+. +...|+|+ .|.+. |+.. .++....||+|.+...
T Consensus 307 L~CPl~~~Rm~-~P~-r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 307 LNCPLSKMRMS-LPA-RGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ecCCcccceee-cCC-cccccccc---eecchhhhHHhccCCCeeeCccCCcccc
Confidence 46777766655 221 12345555 45554 4433 3445678999976543
No 151
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=32.78 E-value=14 Score=37.01 Aligned_cols=52 Identities=23% Similarity=0.485 Sum_probs=27.9
Q ss_pred CCccccccccccccccccEEeccC---Ccc--------hhHHHHHHHHh-cCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCG---HLY--------HADCLENITAE-INKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCg---H~F--------h~~CI~~Wl~~-~~~~~~~CPvCr~~~ 219 (323)
.++.|+||-+... +-..+.|.|. -.| |..|++.---. ..-..+.||.||+.-
T Consensus 14 l~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQK 77 (475)
T KOG4218|consen 14 LGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQK 77 (475)
T ss_pred cccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHH
Confidence 5667888887766 5555556543 222 33454431100 001145799999753
No 152
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=31.00 E-value=11 Score=33.29 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=20.4
Q ss_pred chhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 193 YHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 193 Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
||..||++=|......+..||.|...
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCC
Confidence 89999999776655557899999853
No 153
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=30.79 E-value=25 Score=37.77 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=34.1
Q ss_pred CCccccccccccc--cccccEEeccCCcchhHHHHHHHHhcC-CCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS--ELCVVAVLTCGHLYHADCLENITAEIN-KYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~--~~~vv~~LpCgH~Fh~~CI~~Wl~~~~-~~~~~CPvCr~ 217 (323)
....|.||-..=. .+..++.-.||-.||..|+..|+.... .....||-||.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 4566888865533 222333346999999999999997642 23467888875
No 154
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=30.20 E-value=34 Score=23.90 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=20.7
Q ss_pred ccccCCCCCCCcccccccCccccCCCCCcc
Q 020624 247 RIVDSNLDSNSVVLDRHKGSWNEGKGPKMA 276 (323)
Q Consensus 247 ~vld~~~~~~~~~~~~~~~~~~~Gk~~k~~ 276 (323)
+++|.++++..+.++++.+++..+...+-.
T Consensus 1 ltlDp~TAh~~L~lS~d~k~v~~~~~~~~~ 30 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSEDGKSVRYSEQPQNY 30 (49)
T ss_dssp -EB-TTTS-TTEEEETTSSEEEE-SST-S-
T ss_pred CEECcccCCCCeEECCCCeEEEEccCCccC
Confidence 368999999999999999998877666433
No 155
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.10 E-value=26 Score=21.84 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=5.9
Q ss_pred cccccccccc
Q 020624 170 TCGVCSKLLS 179 (323)
Q Consensus 170 ~C~ICle~~~ 179 (323)
.|+-|.....
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 4666666544
No 156
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=29.96 E-value=29 Score=36.83 Aligned_cols=35 Identities=20% Similarity=0.524 Sum_probs=24.3
Q ss_pred CCCcccccccccccc----ccc------cEEeccCCcchhHHHHH
Q 020624 166 VDMQTCGVCSKLLSE----LCV------VAVLTCGHLYHADCLEN 200 (323)
Q Consensus 166 ~~~~~C~ICle~~~~----~~v------v~~LpCgH~Fh~~CI~~ 200 (323)
.....|+||.|.|.+ ... ...+-=|-+||..|+.+
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e 555 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSE 555 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccch
Confidence 577899999999881 000 11133589999999877
No 157
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=31 Score=34.70 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=28.1
Q ss_pred Cccccccccccc--cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLS--ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 168 ~~~C~ICle~~~--~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
-..|++|.-.+. .+-....=.|||-||..|...|... ...|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~----~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH----NGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC----CccccCc
Confidence 345777765443 2433333359999999999999765 4455444
No 158
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=26.85 E-value=26 Score=41.04 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=43.0
Q ss_pred CCCCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 164 SSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 164 ~~~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.+.....|.||..-......+.-.-|--.||..|+..-+......+..||-|+...
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34577899999988774445433458888999999998877666688999998654
No 159
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=26.10 E-value=14 Score=40.55 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENIT 202 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl 202 (323)
....|..|..-+. .-.-+--.|||.||..|+..|.
T Consensus 228 ~~~mC~~C~~tlf-n~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTLF-NIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhccccc-ceeEEccccCCeeeecchhhcc
Confidence 4468999987755 1122224599999999999994
No 160
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=46 Score=36.04 Aligned_cols=46 Identities=30% Similarity=0.683 Sum_probs=32.8
Q ss_pred cccccccccccccccEEeccCC-cchhHHHHHHHHhc--CCCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGH-LYHADCLENITAEI--NKYDPACPVCTLG 218 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH-~Fh~~CI~~Wl~~~--~~~~~~CPvCr~~ 218 (323)
.|.||-.-+. +++.-.||| .-|..|..+....- .+....||+|+..
T Consensus 2 ~c~ic~~s~~---~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~ 50 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRRE 50 (669)
T ss_pred CcceeecCcc---ccccccccccccchhhhhhhhhhcccccccccCcccccc
Confidence 5999987644 444467999 89999998854332 2335678999874
No 161
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=25.91 E-value=32 Score=24.98 Aligned_cols=42 Identities=21% Similarity=0.403 Sum_probs=19.8
Q ss_pred cccccccccccc-------ccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 171 CGVCSKLLSELC-------VVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 171 C~ICle~~~~~~-------vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
|--|+..|.... ..+--.|++.||.+|=. .. .+. --.||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~-fi-HE~--LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDV-FI-HET--LHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHH-TT-TTT--S-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcCh-hh-hcc--ccCCcCCC
Confidence 566777777432 12223599999999932 22 211 34799883
No 162
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.89 E-value=5.7 Score=30.71 Aligned_cols=39 Identities=26% Similarity=0.518 Sum_probs=21.1
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
..|++|...+.... ||.+|..|-..... ...||-|..+.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~~~~-----~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKDYKK-----EAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--EEEE-----EEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccccee-----cccCCCcccHH
Confidence 57999998876111 77888888765432 45799997654
No 163
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=25.78 E-value=12 Score=26.84 Aligned_cols=14 Identities=21% Similarity=0.524 Sum_probs=12.5
Q ss_pred ccCCcchhHHHHHH
Q 020624 188 TCGHLYHADCLENI 201 (323)
Q Consensus 188 pCgH~Fh~~CI~~W 201 (323)
.|||.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 58999999998887
No 164
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=24.71 E-value=40 Score=32.53 Aligned_cols=57 Identities=25% Similarity=0.443 Sum_probs=35.2
Q ss_pred cccccccccc-ccccccEE---eccCCcchhHHHHHHHHhcC-----CCCCCCCCCCCCCccchHhH
Q 020624 169 QTCGVCSKLL-SELCVVAV---LTCGHLYHADCLENITAEIN-----KYDPACPVCTLGEKKTHKLS 226 (323)
Q Consensus 169 ~~C~ICle~~-~~~~vv~~---LpCgH~Fh~~CI~~Wl~~~~-----~~~~~CPvCr~~~~~~~~L~ 226 (323)
..|-+|.+.+ +.+...+. -.|+-++|..|+..-+.... .....||.|+. +.....++
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~-~~~w~~lv 248 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEK-FLSWTTLV 248 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhc-eeeHHHHH
Confidence 5899999988 32222211 13899999999999433322 12457999976 33344343
No 165
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=24.51 E-value=44 Score=33.09 Aligned_cols=43 Identities=7% Similarity=-0.063 Sum_probs=29.5
Q ss_pred CCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
....|.+|-+-+- ..+..+|||. ||.+|.. +.. +++||+|..-
T Consensus 342 s~~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~----~~~~~~c~~~ 385 (394)
T KOG2113|consen 342 SSLKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASA----SPTSSTCDHN 385 (394)
T ss_pred hhcccccccCcee---eeEeecCCcccChhhhhh--ccc----CCcccccccc
Confidence 4566888875543 1223579987 8999977 333 7899999754
No 166
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.18 E-value=38 Score=36.62 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=30.2
Q ss_pred Cccccccccccc-cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 168 ~~~C~ICle~~~-~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
...|-||+..=. +..+.+.+.|+-.||..|-... ...||+|.
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~-------~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY-------ASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhhhhhh-------hccCcccC
Confidence 457999986522 3446666789999999985553 44699995
No 167
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=40 Score=35.31 Aligned_cols=40 Identities=25% Similarity=0.681 Sum_probs=31.4
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
....|.||+... ..++.+|- |.-|+..|+.. ...||.|..
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~----~~~~pl~~~ 517 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYV----QEVCPLCHT 517 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhh----ccccCCCch
Confidence 456799999886 33446787 99999999977 668999975
No 168
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.49 E-value=12 Score=35.76 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCccccccccccccccccEEec------cCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLT------CGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~Lp------CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
....|+||-..-. +.+|. =.|.+|.-|-.+|--. ...||.|-.
T Consensus 171 ~~g~CPvCGs~P~----~s~l~~~~~~G~R~L~Cs~C~t~W~~~----R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPV----LSVLRGGEREGKRYLHCSLCGTEWRFV----RIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EE----EEEEE------EEEEEETTT--EEE------TTS-TTT--
T ss_pred cCCcCCCCCCcCc----eEEEecCCCCccEEEEcCCCCCeeeec----CCCCcCCCC
Confidence 4579999986633 22221 1467888899999655 668999954
No 169
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.79 E-value=32 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=11.1
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 198 LENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 198 I~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
+..++..-......||+|..++..-
T Consensus 9 ~~k~i~~l~~~~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 9 LKKYIEELKEAKGCCPLCGRPLDEE 33 (54)
T ss_dssp HHHHHHHHTT-SEE-TTT--EE-HH
T ss_pred HHHHHHHHhcCCCcCCCCCCCCCHH
Confidence 4445444333344899998766433
No 170
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.79 E-value=27 Score=34.27 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=35.8
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
+...|-||...|...... --|.|-|+..|...|... ...||.|+..
T Consensus 104 ~~~~~~~~~g~l~vpt~~--qg~w~qf~~~~p~~~~~~----~~~~~d~~~~ 149 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI--QGCWHQFCYVCPKSNFAM----GNDCPDCRGK 149 (324)
T ss_pred CccceeeeeeeEEecccc--cCceeeeeecCCchhhhh----hhccchhhcC
Confidence 677899999998822222 239999999999999987 5689999753
No 171
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.88 E-value=44 Score=22.16 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=7.9
Q ss_pred ccccccccccc
Q 020624 169 QTCGVCSKLLS 179 (323)
Q Consensus 169 ~~C~ICle~~~ 179 (323)
..|+-|...|.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 35777877776
No 172
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.81 E-value=52 Score=20.58 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=10.5
Q ss_pred cccccccccccccccEEeccCCcchhHHH
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCL 198 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI 198 (323)
.|.+|.+.........-..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58888888663244444578888898885
No 173
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.80 E-value=86 Score=26.40 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=29.3
Q ss_pred ccccccccccccccc-----------cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCV-----------VAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 169 ~~C~ICle~~~~~~v-----------v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
..|--|+..|...++ .+--.|++.||.+|-.-+-.. -..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~----Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES----LHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh----ccCCcCCC
Confidence 458999888863321 112469999999996554433 44799995
No 174
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.68 E-value=47 Score=30.57 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=11.2
Q ss_pred CCccccccccccc
Q 020624 167 DMQTCGVCSKLLS 179 (323)
Q Consensus 167 ~~~~C~ICle~~~ 179 (323)
....||||-..|.
T Consensus 4 k~~~CPvC~~~F~ 16 (214)
T PF09986_consen 4 KKITCPVCGKEFK 16 (214)
T ss_pred CceECCCCCCeee
Confidence 4568999999998
No 175
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=21.59 E-value=57 Score=32.46 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=30.7
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
...|-.|.+.+......+--.|.+.||.+|-.- +-+. --.||-|-
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~-iHes---Lh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVF-IHES---LHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHH-HHhh---hhcCCCcC
Confidence 345999987777555555557999999999432 2221 33699995
No 176
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.39 E-value=48 Score=31.81 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=31.9
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
...|+|=...+. .|++ --.|||+|-++=|.+.+... ..-.||+=
T Consensus 176 s~rdPis~~~I~-nPvi-SkkC~HvydrDsI~~~l~~~--~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIV-NPVI-SKKCGHVYDRDSIMQILCDE--ITIRCPVL 219 (262)
T ss_pred cccCchhhhhhh-chhh-hcCcCcchhhhhHHHHhccC--ceeecccc
Confidence 357999877777 5554 24699999999999987542 24568874
Done!