Query 020624
Match_columns 323
No_of_seqs 353 out of 1573
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.4 1.3E-13 4.5E-18 108.4 5.9 72 145-220 14-88 (91)
2 2ep4_A Ring finger protein 24; 99.4 2.8E-13 9.7E-18 101.7 4.8 53 166-222 13-65 (74)
3 1x4j_A Ring finger protein 38; 99.4 3.1E-13 1.1E-17 102.0 4.1 51 166-220 21-71 (75)
4 2kiz_A E3 ubiquitin-protein li 99.3 8.5E-13 2.9E-17 97.8 5.1 51 166-220 12-62 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.3 4.2E-13 1.4E-17 95.0 3.1 49 167-219 4-53 (55)
6 2ect_A Ring finger protein 126 99.3 8.4E-13 2.9E-17 100.1 4.3 51 166-220 13-63 (78)
7 1v87_A Deltex protein 2; ring- 99.3 2.9E-12 1E-16 103.8 6.4 53 167-219 24-92 (114)
8 2ecm_A Ring finger and CHY zin 99.3 2E-12 6.7E-17 91.4 4.6 49 167-219 4-53 (55)
9 2ea6_A Ring finger protein 4; 99.3 2.1E-12 7.3E-17 94.9 4.5 51 166-220 13-67 (69)
10 3ztg_A E3 ubiquitin-protein li 99.3 2.4E-12 8.2E-17 100.5 4.2 50 166-220 11-61 (92)
11 2ecl_A Ring-box protein 2; RNF 99.2 2.7E-12 9.3E-17 98.9 3.8 51 166-220 13-75 (81)
12 3ng2_A RNF4, snurf, ring finge 99.2 2.8E-12 9.7E-17 95.0 3.4 51 166-220 8-62 (71)
13 2d8t_A Dactylidin, ring finger 99.2 2.2E-12 7.5E-17 96.4 2.2 49 165-220 12-60 (71)
14 2yur_A Retinoblastoma-binding 99.2 6.3E-12 2.2E-16 94.9 4.5 50 166-220 13-63 (74)
15 2djb_A Polycomb group ring fin 99.2 7.2E-12 2.5E-16 93.8 4.7 50 166-221 13-62 (72)
16 3dpl_R Ring-box protein 1; ubi 99.2 5.7E-12 2E-16 102.6 4.3 50 166-219 35-99 (106)
17 2xeu_A Ring finger protein 4; 99.2 5.7E-12 1.9E-16 91.2 3.1 50 167-220 2-55 (64)
18 1t1h_A Gspef-atpub14, armadill 99.2 3.6E-12 1.2E-16 96.5 1.9 49 166-220 6-54 (78)
19 4ayc_A E3 ubiquitin-protein li 99.2 3.4E-12 1.2E-16 107.5 1.9 49 167-222 52-100 (138)
20 2y43_A E3 ubiquitin-protein li 99.2 6.6E-12 2.3E-16 99.5 3.4 48 167-221 21-69 (99)
21 2csy_A Zinc finger protein 183 99.2 1.3E-11 4.4E-16 94.4 4.9 48 166-220 13-60 (81)
22 1chc_A Equine herpes virus-1 r 99.2 8.2E-12 2.8E-16 92.0 3.6 48 167-220 4-51 (68)
23 2kr4_A Ubiquitin conjugation f 99.2 1.1E-11 3.8E-16 96.6 4.5 62 167-235 13-74 (85)
24 2ecy_A TNF receptor-associated 99.2 1.5E-11 5E-16 90.5 3.9 49 166-220 13-61 (66)
25 2ysl_A Tripartite motif-contai 99.1 1.3E-11 4.5E-16 92.0 3.0 51 166-220 18-68 (73)
26 1g25_A CDK-activating kinase a 99.1 2.5E-11 8.4E-16 89.0 4.4 50 167-220 2-54 (65)
27 3fl2_A E3 ubiquitin-protein li 99.1 1E-11 3.5E-16 102.4 2.4 49 167-221 51-99 (124)
28 2ysj_A Tripartite motif-contai 99.1 2.2E-11 7.5E-16 88.7 3.6 46 166-215 18-63 (63)
29 2ct2_A Tripartite motif protei 99.1 3.7E-11 1.3E-15 92.4 5.0 54 166-220 13-67 (88)
30 2kre_A Ubiquitin conjugation f 99.1 2.1E-11 7E-16 98.1 3.0 63 166-235 27-89 (100)
31 1wgm_A Ubiquitin conjugation f 99.1 2.9E-11 9.9E-16 96.9 3.6 62 167-235 21-83 (98)
32 2ckl_A Polycomb group ring fin 99.1 3E-11 1E-15 97.3 3.3 48 167-221 14-62 (108)
33 3lrq_A E3 ubiquitin-protein li 99.1 2.1E-11 7.2E-16 97.3 2.3 50 167-221 21-70 (100)
34 2ecj_A Tripartite motif-contai 99.1 4.3E-11 1.5E-15 85.2 2.8 46 166-215 13-58 (58)
35 2ecw_A Tripartite motif-contai 99.1 9.6E-11 3.3E-15 89.0 4.7 51 167-220 18-70 (85)
36 2ecn_A Ring finger protein 141 99.1 1.4E-11 4.8E-16 91.4 -0.1 47 166-220 13-59 (70)
37 2yu4_A E3 SUMO-protein ligase 99.1 1.2E-10 4E-15 92.2 5.2 50 166-218 5-59 (94)
38 4a0k_B E3 ubiquitin-protein li 99.1 1.8E-11 6.3E-16 101.5 0.5 50 166-219 46-110 (117)
39 2d8s_A Cellular modulator of i 99.1 9.3E-11 3.2E-15 90.9 4.3 52 166-220 13-69 (80)
40 1z6u_A NP95-like ring finger p 99.1 5.2E-11 1.8E-15 102.2 3.1 50 167-222 77-126 (150)
41 2egp_A Tripartite motif-contai 99.1 4.4E-11 1.5E-15 90.3 2.3 52 166-220 10-64 (79)
42 2ecv_A Tripartite motif-contai 99.1 1.2E-10 4.1E-15 88.5 4.7 52 166-220 17-70 (85)
43 2ckl_B Ubiquitin ligase protei 99.0 5.2E-11 1.8E-15 102.7 2.5 51 167-222 53-103 (165)
44 4ap4_A E3 ubiquitin ligase RNF 99.0 7E-11 2.4E-15 96.7 2.9 50 167-220 6-59 (133)
45 3hct_A TNF receptor-associated 99.0 7.4E-11 2.5E-15 96.6 2.9 50 166-221 16-65 (118)
46 1jm7_A BRCA1, breast cancer ty 99.0 1E-10 3.5E-15 93.9 3.4 50 167-220 20-69 (112)
47 3l11_A E3 ubiquitin-protein li 99.0 7.5E-11 2.6E-15 95.8 1.4 50 166-221 13-62 (115)
48 2c2l_A CHIP, carboxy terminus 99.0 4.4E-10 1.5E-14 102.8 6.1 63 166-234 206-268 (281)
49 1jm7_B BARD1, BRCA1-associated 99.0 9.4E-11 3.2E-15 95.8 1.3 45 167-220 21-66 (117)
50 1rmd_A RAG1; V(D)J recombinati 98.9 2.5E-10 8.5E-15 92.8 2.3 49 167-221 22-70 (116)
51 2vje_A E3 ubiquitin-protein li 98.9 3.1E-10 1.1E-14 83.8 1.9 54 166-224 6-60 (64)
52 1e4u_A Transcriptional repress 98.9 6.2E-10 2.1E-14 85.7 3.3 53 166-222 9-63 (78)
53 4ap4_A E3 ubiquitin ligase RNF 98.9 5.7E-10 1.9E-14 91.3 2.9 51 166-220 70-124 (133)
54 1bor_A Transcription factor PM 98.8 7.8E-10 2.7E-14 79.3 1.5 45 166-220 4-48 (56)
55 2f42_A STIP1 homology and U-bo 98.8 1.9E-09 6.6E-14 95.5 4.0 64 166-235 104-167 (179)
56 4ic3_A E3 ubiquitin-protein li 98.8 6.8E-10 2.3E-14 84.0 -0.1 46 167-223 23-69 (74)
57 3hcs_A TNF receptor-associated 98.8 2.6E-09 8.8E-14 92.4 3.5 50 166-221 16-65 (170)
58 2vje_B MDM4 protein; proto-onc 98.8 1.4E-09 4.8E-14 80.0 1.3 53 167-224 6-59 (63)
59 1wim_A KIAA0161 protein; ring 98.8 6.1E-09 2.1E-13 81.8 4.9 72 167-239 4-82 (94)
60 3knv_A TNF receptor-associated 98.8 1.1E-09 3.6E-14 93.1 0.4 48 166-219 29-76 (141)
61 2y1n_A E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 104.1 3.2 49 167-221 331-379 (389)
62 2ct0_A Non-SMC element 1 homol 98.7 7.9E-09 2.7E-13 79.1 4.3 49 167-219 14-62 (74)
63 2ecg_A Baculoviral IAP repeat- 98.7 5.3E-09 1.8E-13 79.0 1.6 46 167-223 24-70 (75)
64 3htk_C E3 SUMO-protein ligase 98.6 1.1E-08 3.7E-13 95.5 2.4 51 166-220 179-231 (267)
65 2ea5_A Cell growth regulator w 98.5 4E-08 1.4E-12 73.4 3.2 49 166-225 13-62 (68)
66 2yho_A E3 ubiquitin-protein li 98.4 1.9E-08 6.5E-13 77.2 -0.9 46 167-223 17-63 (79)
67 2bay_A PRE-mRNA splicing facto 98.4 8.7E-08 3E-12 70.3 2.5 45 169-220 4-49 (61)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.4 3.6E-07 1.2E-11 66.9 4.6 50 166-220 4-58 (60)
69 3t6p_A Baculoviral IAP repeat- 98.3 5.9E-08 2E-12 93.9 -0.4 47 167-224 294-341 (345)
70 3k1l_B Fancl; UBC, ring, RWD, 98.1 6.8E-07 2.3E-11 86.4 1.5 53 167-219 307-371 (381)
71 3vk6_A E3 ubiquitin-protein li 97.8 1.3E-05 4.4E-10 64.5 3.9 46 170-220 3-48 (101)
72 3nw0_A Non-structural maintena 96.8 0.00051 1.7E-08 63.0 3.0 48 167-218 179-226 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0043 1.5E-07 48.5 2.3 35 167-201 2-36 (101)
74 2lri_C Autoimmune regulator; Z 92.6 0.048 1.6E-06 40.2 1.9 50 167-219 11-60 (66)
75 1wil_A KIAA1045 protein; ring 92.3 0.091 3.1E-06 40.9 3.2 47 166-216 13-74 (89)
76 3m62_A Ubiquitin conjugation f 90.9 0.14 4.8E-06 55.3 4.0 64 166-236 889-953 (968)
77 2ko5_A Ring finger protein Z; 90.6 0.045 1.5E-06 43.5 -0.2 44 167-219 27-71 (99)
78 1f62_A Transcription factor WS 86.0 0.22 7.7E-06 34.2 1.0 48 170-217 2-49 (51)
79 2l5u_A Chromodomain-helicase-D 85.4 0.23 7.8E-06 35.8 0.8 49 166-217 9-57 (61)
80 2ysm_A Myeloid/lymphoid or mix 84.5 0.2 6.8E-06 39.9 0.2 51 166-216 5-55 (111)
81 3lqh_A Histone-lysine N-methyl 83.2 0.39 1.3E-05 42.2 1.5 52 169-220 3-65 (183)
82 3o36_A Transcription intermedi 83.0 0.19 6.6E-06 43.5 -0.6 49 167-218 3-51 (184)
83 1mm2_A MI2-beta; PHD, zinc fin 83.0 0.18 6.3E-06 36.3 -0.6 50 166-218 7-56 (61)
84 2k16_A Transcription initiatio 82.7 0.24 8.2E-06 36.8 -0.1 51 167-217 17-67 (75)
85 2ffw_A Midline-1; B-BOX, ring 81.1 0.95 3.3E-05 34.0 2.8 44 254-301 27-72 (78)
86 2lbm_A Transcriptional regulat 80.9 2.4 8.2E-05 35.7 5.5 50 165-217 60-116 (142)
87 1weu_A Inhibitor of growth fam 80.8 0.5 1.7E-05 37.0 1.1 49 167-219 35-86 (91)
88 2yql_A PHD finger protein 21A; 80.6 0.09 3.1E-06 37.2 -3.0 49 166-217 7-55 (56)
89 3u5n_A E3 ubiquitin-protein li 80.3 0.26 8.8E-06 43.6 -0.8 49 167-218 6-54 (207)
90 2cs3_A Protein C14ORF4, MY039 79.9 2.9 9.9E-05 32.2 5.1 37 165-204 12-52 (93)
91 1wen_A Inhibitor of growth fam 78.3 0.64 2.2E-05 34.6 1.0 49 167-219 15-66 (71)
92 1weo_A Cellulose synthase, cat 76.6 3.4 0.00012 32.4 4.7 51 167-220 15-69 (93)
93 2puy_A PHD finger protein 21A; 76.0 0.21 7E-06 35.7 -2.3 48 166-216 3-50 (60)
94 2yt5_A Metal-response element- 75.3 0.26 8.8E-06 35.6 -1.9 53 166-218 4-61 (66)
95 1we9_A PHD finger family prote 74.8 0.25 8.4E-06 35.6 -2.1 52 166-217 4-57 (64)
96 1fp0_A KAP-1 corepressor; PHD 73.9 0.54 1.8E-05 36.6 -0.5 49 166-217 23-71 (88)
97 2e6r_A Jumonji/ARID domain-con 72.7 0.26 9E-06 38.4 -2.6 51 166-216 14-64 (92)
98 1wep_A PHF8; structural genomi 72.4 2 6.7E-05 32.2 2.3 51 167-218 11-63 (79)
99 3v43_A Histone acetyltransfera 72.1 2.7 9.3E-05 33.5 3.2 50 167-216 4-62 (112)
100 1xwh_A Autoimmune regulator; P 72.0 0.31 1.1E-05 35.5 -2.2 49 166-217 6-54 (66)
101 2lv9_A Histone-lysine N-methyl 71.9 1.2 4.1E-05 35.0 1.0 50 167-218 27-76 (98)
102 2ro1_A Transcription intermedi 71.7 0.61 2.1E-05 40.8 -0.8 47 168-217 2-48 (189)
103 3v43_A Histone acetyltransfera 65.0 1 3.4E-05 36.1 -0.8 49 169-217 62-111 (112)
104 3asl_A E3 ubiquitin-protein li 62.5 1.2 4.3E-05 32.8 -0.6 48 170-217 20-68 (70)
105 1wev_A Riken cDNA 1110020M19; 61.8 0.68 2.3E-05 35.7 -2.2 50 167-216 15-70 (88)
106 3shb_A E3 ubiquitin-protein li 60.8 1 3.4E-05 34.1 -1.4 48 170-217 28-76 (77)
107 2e6s_A E3 ubiquitin-protein li 60.7 1.2 4E-05 33.7 -1.0 49 169-217 27-76 (77)
108 3ql9_A Transcriptional regulat 60.3 9.6 0.00033 31.5 4.4 51 164-217 53-110 (129)
109 3c6w_A P28ING5, inhibitor of g 59.5 0.87 3E-05 32.5 -1.8 47 167-217 8-57 (59)
110 3i2d_A E3 SUMO-protein ligase 58.2 7.9 0.00027 37.5 4.1 50 168-220 249-299 (371)
111 2vnf_A ING 4, P29ING4, inhibit 58.1 0.9 3.1E-05 32.5 -2.0 47 167-217 9-58 (60)
112 2g6q_A Inhibitor of growth pro 57.1 1.1 3.7E-05 32.4 -1.7 48 167-218 10-60 (62)
113 2ysm_A Myeloid/lymphoid or mix 55.2 0.77 2.6E-05 36.4 -3.1 48 170-217 56-103 (111)
114 4fo9_A E3 SUMO-protein ligase 53.4 11 0.00037 36.4 4.1 50 168-220 215-265 (360)
115 2ri7_A Nucleosome-remodeling f 51.9 2.7 9.4E-05 35.6 -0.3 50 167-217 7-58 (174)
116 2l43_A N-teminal domain from h 51.5 2 7E-05 33.0 -1.1 50 166-217 23-74 (88)
117 2ku3_A Bromodomain-containing 51.1 3 0.0001 30.8 -0.1 49 166-216 14-64 (71)
118 3o70_A PHD finger protein 13; 50.1 1.2 4E-05 32.8 -2.5 49 167-217 18-66 (68)
119 3ask_A E3 ubiquitin-protein li 49.8 2 7E-05 38.9 -1.5 49 169-217 175-224 (226)
120 4gne_A Histone-lysine N-methyl 49.8 4.6 0.00016 32.3 0.7 47 166-217 13-61 (107)
121 2yw8_A RUN and FYVE domain-con 49.6 9.4 0.00032 28.6 2.5 35 166-200 17-52 (82)
122 1z2q_A LM5-1; membrane protein 48.7 9.9 0.00034 28.6 2.5 35 166-200 19-54 (84)
123 2kgg_A Histone demethylase jar 47.6 2.3 7.9E-05 29.3 -1.2 47 170-216 4-52 (52)
124 3t7l_A Zinc finger FYVE domain 47.3 9.2 0.00031 29.3 2.1 35 167-201 19-54 (90)
125 1joc_A EEA1, early endosomal a 47.0 8.9 0.00031 31.2 2.1 34 167-200 68-102 (125)
126 1vfy_A Phosphatidylinositol-3- 45.9 12 0.00041 27.4 2.4 33 168-200 11-44 (73)
127 2kwj_A Zinc finger protein DPF 45.7 2.8 9.7E-05 33.5 -1.1 48 169-216 2-59 (114)
128 1wfk_A Zinc finger, FYVE domai 45.2 12 0.0004 28.7 2.4 35 166-200 7-42 (88)
129 1x4u_A Zinc finger, FYVE domai 44.8 11 0.00036 28.4 2.1 35 166-200 12-47 (84)
130 3mjh_B Early endosome antigen 44.1 5.3 0.00018 25.6 0.2 14 166-179 3-16 (34)
131 1wee_A PHD finger family prote 43.5 1.6 5.6E-05 32.0 -2.7 50 167-217 15-65 (72)
132 2d8v_A Zinc finger FYVE domain 42.2 11 0.00038 27.8 1.7 32 166-201 6-38 (67)
133 2jmi_A Protein YNG1, ING1 homo 40.8 3.2 0.00011 32.3 -1.5 46 167-216 25-74 (90)
134 1dvp_A HRS, hepatocyte growth 40.7 11 0.00037 33.3 1.8 34 167-200 160-194 (220)
135 3zyq_A Hepatocyte growth facto 40.7 11 0.00039 33.4 2.0 34 167-200 163-197 (226)
136 1y02_A CARP2, FYVE-ring finger 39.9 13 0.00043 30.3 1.9 48 164-215 15-63 (120)
137 2kwj_A Zinc finger protein DPF 38.7 1.9 6.5E-05 34.5 -3.2 47 170-216 60-106 (114)
138 1zfo_A LAsp-1; LIM domain, zin 38.6 16 0.00054 22.4 1.8 27 169-197 4-30 (31)
139 3mpx_A FYVE, rhogef and PH dom 36.5 7.4 0.00025 37.2 0.0 49 167-215 374-426 (434)
140 2zet_C Melanophilin; complex, 36.2 15 0.0005 31.1 1.8 49 166-217 66-116 (153)
141 1z60_A TFIIH basal transcripti 34.4 11 0.00039 27.0 0.7 43 169-215 16-58 (59)
142 1zbd_B Rabphilin-3A; G protein 30.8 20 0.00069 29.6 1.8 52 166-217 53-106 (134)
143 1wem_A Death associated transc 30.5 24 0.00081 25.8 1.9 50 167-217 15-69 (76)
144 2o35_A Hypothetical protein DU 30.3 20 0.0007 28.5 1.6 13 192-204 42-54 (105)
145 3fyb_A Protein of unknown func 29.7 21 0.00073 28.3 1.6 13 192-204 41-53 (104)
146 2jmo_A Parkin; IBR, E3 ligase, 28.8 4.3 0.00015 30.4 -2.5 14 188-201 55-68 (80)
147 2pv0_B DNA (cytosine-5)-methyl 27.2 40 0.0014 32.7 3.4 49 166-217 91-147 (386)
148 1x4i_A Inhibitor of growth pro 25.0 15 0.0005 27.0 -0.1 46 167-216 5-53 (70)
149 2vpb_A Hpygo1, pygopus homolog 24.6 31 0.001 24.8 1.6 51 166-216 6-64 (65)
150 3uv9_A TRIM5alpha, tripartite 22.7 63 0.0022 27.6 3.5 29 241-270 8-36 (186)
151 4b3n_A Maltose-binding peripla 22.3 42 0.0014 33.5 2.6 32 241-273 406-437 (602)
152 2gmg_A Hypothetical protein PF 21.1 43 0.0015 26.7 1.9 24 187-219 71-94 (105)
153 1wew_A DNA-binding family prot 20.8 42 0.0014 24.7 1.7 51 167-218 15-72 (78)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=108.40 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=56.1
Q ss_pred cCCCCHHHHhhccccccc---CCCCCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 145 SLGFNHEKIARSCSRVSA---SSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 145 ~~Gl~~e~i~~~~~~~s~---s~~~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
..|+..+.|+.++..... ....++..|+||++.|..+..+.+|+|||.||..||..|+.. ...||+||..+.
T Consensus 14 ~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 14 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFP 88 (91)
T ss_dssp CCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSS
T ss_pred CCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCC
Confidence 457888888877753221 122367789999999986777777999999999999999976 679999998653
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=101.70 Aligned_cols=53 Identities=21% Similarity=0.488 Sum_probs=45.0
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
.++..|+||++.|.....+.+|+|||.||..||.+|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcccccc
Confidence 367889999999986666667899999999999999987 56999999876544
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3.1e-13 Score=102.01 Aligned_cols=51 Identities=25% Similarity=0.643 Sum_probs=44.4
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|.....+..|+|||.||..||.+|+.. ...||+||+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCC
Confidence 367789999999986666777999999999999999987 679999998764
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=8.5e-13 Score=97.78 Aligned_cols=51 Identities=27% Similarity=0.647 Sum_probs=43.4
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|.....+.+++|||.||..||.+|+.. ...||+||..+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcccc
Confidence 366789999999975566667999999999999999988 668999998654
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.33 E-value=4.2e-13 Score=95.04 Aligned_cols=49 Identities=33% Similarity=0.710 Sum_probs=42.4
Q ss_pred CCccccccccccccccccEEec-cCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~Lp-CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
++..|+||++.|..+..+..++ |||.||..||.+|+.. ...||+||+.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEe
Confidence 6678999999998666666687 9999999999999976 67999999765
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=8.4e-13 Score=100.07 Aligned_cols=51 Identities=27% Similarity=0.542 Sum_probs=43.4
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|.....+.+|+|||.||..||.+|+.. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 63 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLT 63 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccC
Confidence 367899999999985556667899999999999999976 679999998664
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.29 E-value=2.9e-12 Score=103.77 Aligned_cols=53 Identities=25% Similarity=0.457 Sum_probs=40.7
Q ss_pred CCcccccccccccccc---------------ccEEeccCCcchhHHHHHHHHhcC-CCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELC---------------VVAVLTCGHLYHADCLENITAEIN-KYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~---------------vv~~LpCgH~Fh~~CI~~Wl~~~~-~~~~~CPvCr~~~ 219 (323)
.+..|+||++.|.... ++..++|||+||..||..|+.... .....||+||..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 4568999999997322 333689999999999999996432 2367999999765
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.29 E-value=2e-12 Score=91.39 Aligned_cols=49 Identities=33% Similarity=0.724 Sum_probs=41.1
Q ss_pred CCccccccccccccc-cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~-~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
+...|+||++.|.+. ..+.+++|||.||..||.+|+.. ...||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcC
Confidence 567899999999632 34556899999999999999988 57999999764
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=94.85 Aligned_cols=51 Identities=24% Similarity=0.645 Sum_probs=41.8
Q ss_pred CCCccccccccccccc----cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~----~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|.+. ..+.+++|||.||..||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccC
Confidence 4678899999999832 12245899999999999999987 679999998764
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=100.49 Aligned_cols=50 Identities=26% Similarity=0.719 Sum_probs=42.5
Q ss_pred CCCccccccccccccccccEEec-cCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~Lp-CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .+++ ++ |||.||..||..|+.... ...||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT-DAVV--IPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS-SCEE--CTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc-CceE--CCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 37789999999998 7776 89 999999999999997632 468999998763
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.7e-12 Score=98.95 Aligned_cols=51 Identities=25% Similarity=0.614 Sum_probs=39.1
Q ss_pred CCCcccccccccccc-----------ccccEEec-cCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSE-----------LCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~-----------~~vv~~Lp-CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.++..|+||++.|.+ +..+.+++ |||.||.+||.+|+.. ..+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcc
Confidence 366778888888752 33344455 9999999999999987 679999998653
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.24 E-value=2.8e-12 Score=95.02 Aligned_cols=51 Identities=24% Similarity=0.645 Sum_probs=41.8
Q ss_pred CCCccccccccccccc----cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~----~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.++..|+||++.|.+. .....++|||.||..||.+|+.. ...||+||..+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccC
Confidence 4778899999999832 22355899999999999999987 679999998654
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-12 Score=96.44 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=41.8
Q ss_pred CCCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 165 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 165 ~~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
..+...|+||++.|. .++. ++|||.||..||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~-~~~~--~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCV-HPVS--LPCKHVFCYLCVKGASWL----GKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCS-SEEE--ETTTEEEEHHHHHHCTTC----SSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccC-CCEE--ccCCCHHHHHHHHHHHHC----CCcCcCcCchhC
Confidence 347789999999998 5555 899999999999999976 579999998764
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.22 E-value=6.3e-12 Score=94.88 Aligned_cols=50 Identities=26% Similarity=0.719 Sum_probs=42.1
Q ss_pred CCCccccccccccccccccEEec-cCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~Lp-CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .+++ ++ |||.||..||..|+.... ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT-DAVV--IPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT-TCEE--CSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh-CCeE--cCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCC
Confidence 36789999999998 6766 89 999999999999998632 368999998653
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.2e-12 Score=93.84 Aligned_cols=50 Identities=18% Similarity=0.461 Sum_probs=41.4
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
.+...|+||++.|. .+++ +++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~-~p~~-~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLI-DATT-ITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCS-SCEE-CSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHH-CcCE-ECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCc
Confidence 36788999999998 5544 2399999999999999987 6799999987643
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.22 E-value=5.7e-12 Score=102.64 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=41.4
Q ss_pred CCCccccccccccccc---------------cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSEL---------------CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~---------------~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
+++..|+||++.|.+. ..+..++|||.||..||.+||.. ..+||+||..+
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~ 99 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREW 99 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCcc
Confidence 4678899999998833 12456899999999999999987 77999999875
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=5.7e-12 Score=91.23 Aligned_cols=50 Identities=26% Similarity=0.694 Sum_probs=40.9
Q ss_pred CCccccccccccccc----cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~----~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
+...|+||++.|.+. ..+..++|||.||..||.+|+.. ...||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCC
Confidence 567899999999832 22345899999999999999987 679999998654
No 18
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.19 E-value=3.6e-12 Score=96.52 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=42.0
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .+++ ++|||+||..||..|+... ...||+||....
T Consensus 6 ~~~~~C~IC~~~~~-~Pv~--~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMK-DPVI--VSTGQTYERSSIQKWLDAG---HKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCS-SEEE--ETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCS
T ss_pred cccCCCCCcccccc-CCEE--cCCCCeecHHHHHHHHHHC---cCCCCCCcCCCC
Confidence 37889999999998 7776 8999999999999999642 568999998754
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.19 E-value=3.4e-12 Score=107.45 Aligned_cols=49 Identities=24% Similarity=0.621 Sum_probs=42.1
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
++..|+||++.|. .+++ ++|||.||..||..|+.. ...||+||..+...
T Consensus 52 ~~~~C~iC~~~~~-~~~~--~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFI-EAVT--LNCAHSFCSYCINEWMKR----KIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCS-SEEE--ETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccC-CceE--CCCCCCccHHHHHHHHHc----CCcCCCCCCcCCCC
Confidence 4568999999998 6665 899999999999999976 67899999877543
No 20
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.19 E-value=6.6e-12 Score=99.50 Aligned_cols=48 Identities=23% Similarity=0.786 Sum_probs=41.0
Q ss_pred CCccccccccccccccccEEe-ccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~L-pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
+...|+||++.|. .+++ + +|||.||..||..|+.. ...||+||..+..
T Consensus 21 ~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN-IAMI--IPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS-SEEE--CTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhC-CcCE--ECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 5678999999998 5654 5 89999999999999976 6799999987654
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=94.38 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=41.7
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .+++ ++|||+||..||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ-NPVV--TKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC-SEEE--CTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc-CeeE--ccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 35678999999998 6665 899999999999999987 679999998764
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.19 E-value=8.2e-12 Score=92.03 Aligned_cols=48 Identities=23% Similarity=0.574 Sum_probs=40.4
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
+...|+||++.+. .++ ..++|||.||..||..|+.. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~-~~~-~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYS-MALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCE-EETTTTEEESTTHHHHHHHH----SCSTTTTCCCCC
T ss_pred CCCCCeeCCcccc-CCc-EecCCCCeeHHHHHHHHHhC----cCcCcCCChhhH
Confidence 5678999999988 332 34899999999999999987 679999998764
No 23
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.19 E-value=1.1e-11 Score=96.63 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=48.6
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEME 235 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~~~~l~~e~~ 235 (323)
+...|+||++.|. +||+ ++|||+||..||..|+.. ..+||+|+.........-+..+++.++
T Consensus 13 ~~~~CpI~~~~m~-dPV~--~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~~l~pn~~L~~~i~ 74 (85)
T 2kr4_A 13 DEFRDPLMDTLMT-DPVR--LPSGTVMDRSIILRHLLN----SPTDPFNRQMLTESMLEPVPELKEQIQ 74 (85)
T ss_dssp TTTBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred hheECcccCchhc-CCeE--CCCCCEECHHHHHHHHhc----CCCCCCCcCCCChHhcchHHHHHHHHH
Confidence 7899999999999 8888 899999999999999986 679999998765433222334444333
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=90.52 Aligned_cols=49 Identities=22% Similarity=0.540 Sum_probs=41.6
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .++. ++|||.||..||..|+.. ....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC-SPKQ--TECGHRFCESCMAALLSS---SSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEES-SCCC--CSSSCCCCHHHHHHHHTT---SSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhc-CeeE--CCCCCHHHHHHHHHHHHh---CcCCCCCCCcCCC
Confidence 36789999999998 7776 899999999999999953 2568999998764
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=91.97 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=41.6
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .+++ ++|||.||..||..|+... .....||+||..+.
T Consensus 18 ~~~~~C~IC~~~~~-~~~~--~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ-KPVT--IDCGHNFCLKCITQIGETS-CGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS-SEEE--CTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC-CeEE--cCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcCC
Confidence 36789999999998 6665 7999999999999999631 12668999998764
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=2.5e-11 Score=89.03 Aligned_cols=50 Identities=24% Similarity=0.461 Sum_probs=39.9
Q ss_pred CCcccccccc-cccccccc--EEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSK-LLSELCVV--AVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle-~~~~~~vv--~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
++..|+||++ .|. .++. .+++|||+||..||.+|+... ...||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHH-CSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccC-CCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccc
Confidence 6788999999 787 4432 347999999999999998652 568999998763
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.14 E-value=1e-11 Score=102.39 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=41.9
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
+...|+||++.|. .+++ ++|||.||..||..|+.. ....||+||..+..
T Consensus 51 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF-RPIT--TVCQHNVCKDCLDRSFRA---QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS-SEEE--CTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc-CcEE--eeCCCcccHHHHHHHHhH---CcCCCCCCCccCCC
Confidence 5678999999999 7766 899999999999999974 15589999987755
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.2e-11 Score=88.65 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=38.5
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
.++..|+||++.|. .+++ ++|||+||..||.+|+... .....||+|
T Consensus 18 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ-KPVT--IDCGHNFCLKCITQIGETS-CGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS-SCEE--CTTSSEECHHHHHHHHHHC-SSCCCCSCC
T ss_pred ccCCCCCcCCchhC-CeEE--eCCCCcchHHHHHHHHHcC-CCCCcCcCC
Confidence 36789999999998 6666 7999999999999999852 125689998
No 29
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.7e-11 Score=92.40 Aligned_cols=54 Identities=26% Similarity=0.586 Sum_probs=42.0
Q ss_pred CCCccccccccccccccc-cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~v-v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|.+... ..+++|||.||..||..|+.... ....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCccc
Confidence 367889999999984322 34489999999999999998731 2468999998653
No 30
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.12 E-value=2.1e-11 Score=98.13 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=48.7
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEME 235 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~~~~l~~e~~ 235 (323)
.+...|+||++.|. +||+ ++|||+||..||..|+.. ..+||+|+.........-+..|+..++
T Consensus 27 p~~~~CpI~~~~m~-dPV~--~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~~L~pn~~Lk~~I~ 89 (100)
T 2kre_A 27 PDEFRDPLMDTLMT-DPVR--LPSGTIMDRSIILRHLLN----SPTDPFNRQTLTESMLEPVPELKEQIQ 89 (100)
T ss_dssp STTTBCTTTCSBCS-SEEE--ETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCTTSSEECHHHHHHHH
T ss_pred cHhhCCcCccCccc-CCeE--CCCCCEEchHHHHHHHHc----CCCCCCCCCCCChhhceECHHHHHHHH
Confidence 37889999999999 8888 899999999999999975 679999998765432222334444433
No 31
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.11 E-value=2.9e-11 Score=96.93 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=48.8
Q ss_pred CCccccccccccccccccEEeccC-CcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEME 235 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~~~~l~~e~~ 235 (323)
++..|+||+++|. +||+ ++|| |+||..||..|+.. ..+||+|+..+......-+..|++.++
T Consensus 21 ~~~~CpI~~~~m~-dPV~--~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~~~L~pn~~Lk~~I~ 83 (98)
T 1wgm_A 21 DEFLDPIMSTLMC-DPVV--LPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTMDQIRPNTELKEKIQ 83 (98)
T ss_dssp TTTBCTTTCSBCS-SEEE--CTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCTTTSEECHHHHHHHH
T ss_pred HhcCCcCcccccc-CCeE--CCCCCeEECHHHHHHHHHh----CCCCCCCCCCCChhhceEcHHHHHHHH
Confidence 7889999999999 8888 8999 99999999999976 669999998765433222344444444
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.10 E-value=3e-11 Score=97.26 Aligned_cols=48 Identities=19% Similarity=0.522 Sum_probs=41.4
Q ss_pred CCccccccccccccccccEEe-ccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~L-pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
+...|+||++.|. .+++ + +|||.||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI-DATT--IIECLHSFCKTCIVRYLET----SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS-SEEE--ETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHh-CcCE--eCCCCChhhHHHHHHHHHh----CCcCcCCCccccc
Confidence 6788999999998 5655 6 99999999999999976 5799999987654
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.10 E-value=2.1e-11 Score=97.33 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=40.8
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
+...|+||++.|. .++ ..++|||.||..||..|+... ...||+||..+..
T Consensus 21 ~~~~C~IC~~~~~-~p~-~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR-DAR-LCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS-SEE-ECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred CCCCCccCCcccc-Ccc-ccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCH
Confidence 6778999999998 443 227899999999999999872 2689999987643
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.3e-11 Score=85.17 Aligned_cols=46 Identities=30% Similarity=0.737 Sum_probs=38.0
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
.+...|+||++.|. .+++ ++|||+||..||..|+... .....||+|
T Consensus 13 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK-EPVI--IECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS-SCCC--CSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred ccCCCCccCCcccC-ccEe--CCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 36789999999998 6666 8999999999999997531 126789998
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=9.6e-11 Score=89.03 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=41.7
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcC--CCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEIN--KYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~--~~~~~CPvCr~~~~ 220 (323)
+...|+||++.|. .+++ ++|||.||..||..|+.... .....||+||..+.
T Consensus 18 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLK-EPVS--ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCS-SCEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhC-ccee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 6778999999998 6665 89999999999999998621 12568999998763
No 36
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-11 Score=91.39 Aligned_cols=47 Identities=23% Similarity=0.724 Sum_probs=40.0
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.+.+ .+++|||.||..||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC----cCcCCCcCCccc
Confidence 367889999999984 44899999999999999975 779999987653
No 37
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=92.23 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=41.7
Q ss_pred CCCccccccccccccccccEEec-cCCcchhHHHHHHHHhcC--CCCCCCCC--CCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEIN--KYDPACPV--CTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~Lp-CgH~Fh~~CI~~Wl~~~~--~~~~~CPv--Cr~~ 218 (323)
.+...|+||++.|. +||+ ++ |||+||..||..|+.... .....||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~-dPV~--~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK-KPVK--NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS-SEEE--ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc-CCEE--cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 47889999999999 8887 86 999999999999998631 22468999 9855
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.06 E-value=1.8e-11 Score=101.50 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=1.7
Q ss_pred CCCcccccccccccccc---------------ccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELC---------------VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~---------------vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
+++..|+||++.|.+.. .+..++|||.||..||.+||.. ..+||+||..+
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~ 110 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREW 110 (117)
T ss_dssp CCC------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCee
Confidence 36678999999997321 2333589999999999999987 67999999864
No 39
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9.3e-11 Score=90.86 Aligned_cols=52 Identities=17% Similarity=0.459 Sum_probs=41.7
Q ss_pred CCCccccccccccccccccEEeccC-----CcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCG-----HLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCg-----H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.++..|.||++.|.++..+ ++||+ |.||.+||++|+.... ...||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeee
Confidence 3677899999998744443 58996 9999999999998743 458999998764
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.05 E-value=5.2e-11 Score=102.20 Aligned_cols=50 Identities=24% Similarity=0.416 Sum_probs=42.3
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
+...|+||++.|. .+++ ++|||.||..||..|+... ...||+||..+...
T Consensus 77 ~~~~C~IC~~~~~-~pv~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QPVT--TECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS-SEEE--CTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc-CCEE--cCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 5678999999998 7776 8999999999999999751 45899999876644
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.05 E-value=4.4e-11 Score=90.28 Aligned_cols=52 Identities=29% Similarity=0.599 Sum_probs=42.5
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcC---CCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEIN---KYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~---~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .+++ ++|||.||..||..|+.... .....||+||..+.
T Consensus 10 ~~~~~C~IC~~~~~-~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELLT-EPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEECS-SCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCcccC-CeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 36789999999998 6776 89999999999999986521 12568999998764
No 42
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=88.51 Aligned_cols=52 Identities=31% Similarity=0.711 Sum_probs=42.4
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhc--CCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI--NKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~--~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .+++ ++|||.||..||..|+... ......||+||..+.
T Consensus 17 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLT-QPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCS-SCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccC-Ccee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 36788999999998 6766 8999999999999999761 122678999998664
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.04 E-value=5.2e-11 Score=102.73 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=41.3
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
+...|+||++.|. .+++ .++|||.||..||..|+... ...||+||..+...
T Consensus 53 ~~~~C~IC~~~~~-~p~~-~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLK-NTMT-TKECLHRFCADCIITALRSG---NKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCS-SEEE-ETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhh-CcCE-eCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCCc
Confidence 5678999999998 5544 24999999999999999752 56899999876543
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=7e-11 Score=96.75 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=41.0
Q ss_pred CCccccccccccccc----cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~----~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
+...|+||++.|.+. ..+..++|||+||..||.+|+.. ...||+||..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN 59 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCc
Confidence 678899999999832 22245899999999999999977 669999998663
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.03 E-value=7.4e-11 Score=96.61 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=42.3
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
.+...|+||++.|. .+++ ++|||.||..||..|+... ...||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALR-EAVQ--TPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhc-CeEE--CCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCH
Confidence 46789999999998 6665 8999999999999999873 3389999987754
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1e-10 Score=93.90 Aligned_cols=50 Identities=20% Similarity=0.553 Sum_probs=41.0
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
+...|+||++.|. .+++ ++|||.||..||..|+.... ....||+||..+.
T Consensus 20 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIK-EPVS--TKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCS-SCCB--CTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCC
T ss_pred CCCCCcccChhhc-CeEE--CCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCC
Confidence 4568999999998 6776 89999999999999997521 1358999998654
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.99 E-value=7.5e-11 Score=95.81 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=42.0
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
.++..|+||++.|. .+++ |+|||.||..||..|+... ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV-EPVT--LPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS-SCEE--CTTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC-ceeE--cCCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 46789999999998 6766 8999999999999998642 5689999987653
No 48
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=4.4e-10 Score=102.75 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=48.1
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEM 234 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~~~~l~~e~ 234 (323)
.+...|+||++.|. +||+ ++|||+||..||..|+... ..+||+|+.+.......-+..++..+
T Consensus 206 ~~~~~c~i~~~~~~-dPv~--~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~~~l~~n~~l~~~i 268 (281)
T 2c2l_A 206 PDYLCGKISFELMR-EPCI--TPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQEQLIPNLAMKEVI 268 (281)
T ss_dssp CSTTBCTTTCSBCS-SEEE--CSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCGGGCEECHHHHHHH
T ss_pred CcccCCcCcCCHhc-CCeE--CCCCCEECHHHHHHHHHHC---CCCCcCCCCCCchhcCcccHHHHHHH
Confidence 37889999999999 8888 8999999999999999863 33599999887544322233344333
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=9.4e-11 Score=95.84 Aligned_cols=45 Identities=27% Similarity=0.738 Sum_probs=39.4
Q ss_pred CCccccccccccccccccEEe-ccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~L-pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
+...|+||++.|. .+++ + +|||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~-~pv~--~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR-EPVC--LGGCEHIFCSNCVSDCIG------TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS-SCBC--CCSSSCCBCTTTGGGGTT------TBCSSSCCBCS
T ss_pred hCCCCCCCChHhh-CccE--eCCCCCHHHHHHHHHHhc------CCCcCCCCcCc
Confidence 6778999999998 7777 7 9999999999999985 47999998764
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.93 E-value=2.5e-10 Score=92.84 Aligned_cols=49 Identities=22% Similarity=0.516 Sum_probs=41.5
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
+...|+||++.|. .+++ ++|||.||..||..|+... ...||+||..+..
T Consensus 22 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILA-DPVE--TSCKHLFCRICILRCLKVM---GSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhc-CcEE--cCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCH
Confidence 4678999999998 6766 8999999999999999863 4589999987653
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.91 E-value=3.1e-10 Score=83.80 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=42.5
Q ss_pred CCCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 224 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~ 224 (323)
.++..|.||++.+. +.++..+||||. ||.+|+..|+.. ...||+||..+....+
T Consensus 6 ~~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~~i~ 60 (64)
T 2vje_A 6 NAIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQMIVL 60 (64)
T ss_dssp GGGSCCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCCEEEE
T ss_pred CCcCCCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchhceEe
Confidence 47778999999977 444422399999 899999999876 6689999998765443
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.89 E-value=6.2e-10 Score=85.70 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=40.2
Q ss_pred CCCccccccccccccccccEEec--cCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLT--CGHLYHADCLENITAEINKYDPACPVCTLGEKKT 222 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~Lp--CgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~ 222 (323)
.++..|+||++.+...+. .+++ |||.||..||..++.. ....||+||..+...
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCccCCC
Confidence 477899999999863222 2244 9999999999998743 267899999877543
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=5.7e-10 Score=91.28 Aligned_cols=51 Identities=24% Similarity=0.645 Sum_probs=41.6
Q ss_pred CCCccccccccccccc----cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~----~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|.+. .....++|||.||..||.+|+.. ...||+||..+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCC
Confidence 3678899999999832 12245899999999999999987 679999998764
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=7.8e-10 Score=79.29 Aligned_cols=45 Identities=24% Similarity=0.512 Sum_probs=38.0
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|+||++.|. .+++ |+|||.||..||..| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~-~p~~--l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAK-CPKL--LPCLHTLCSGCLEAS-------GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCB-CCSC--STTSCCSBTTTCSSS-------SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccC-CeEE--cCCCCcccHHHHccC-------CCCCCcCCcEee
Confidence 36788999999999 6776 899999999999873 457999998654
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.81 E-value=1.9e-09 Score=95.46 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEME 235 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~~~~l~~e~~ 235 (323)
.+...|+||++.|. +||+ ++|||+||..||..|+... ..+||+|+.........-+..|+..++
T Consensus 104 p~~f~CPI~~elm~-DPV~--~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~~~L~pN~~Lk~~Ie 167 (179)
T 2f42_A 104 PDYLCGKISFELMR-EPCI--TPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQDQLIPNLAMKEVID 167 (179)
T ss_dssp CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred cHhhcccCccccCC-CCeE--CCCCCEECHHHHHHHHHhC---CCCCCCCcCCCChhhCcchHHHHHHHH
Confidence 47899999999999 8888 8999999999999999763 237999998775443222344444433
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.78 E-value=6.8e-10 Score=83.97 Aligned_cols=46 Identities=26% Similarity=0.603 Sum_probs=38.3
Q ss_pred CCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTH 223 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~ 223 (323)
++..|+||++.+. .++. ++|||. ||..|+..| ..||+||..+....
T Consensus 23 ~~~~C~iC~~~~~-~~~~--~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVF--VPCGHLVTCKQCAEAV--------DKCPMCYTVITFKQ 69 (74)
T ss_dssp HHTBCTTTSSSBC-CEEE--ETTCCBCCCHHHHTTC--------SBCTTTCCBCSEEE
T ss_pred cCCCCCCCCCCCC-CEEE--cCCCChhHHHHhhhcC--------ccCCCcCcCccCcE
Confidence 5678999999987 5555 899999 999999988 37999998776543
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.77 E-value=2.6e-09 Score=92.38 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=42.6
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
.+...|+||++.|. .++. ++|||+||..||..|+... ...||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~-~pv~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALR-EAVQ--TPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhc-CcEE--CCCCCHHHHHHHHHHHHhC---CCCCCCCccCcch
Confidence 47789999999998 6766 8999999999999999763 3489999987654
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=1.4e-09 Score=80.00 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=41.6
Q ss_pred CCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 224 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~ 224 (323)
....|.||++.+. +.++..+||||. ||..|+..|... ...||+||..+....+
T Consensus 6 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 6 LLKPCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQLVIK 59 (63)
T ss_dssp GGSBCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCCEEEE
T ss_pred cCCCCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhhceEE
Confidence 5678999999876 444423499998 999999999866 5689999988765443
No 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=6.1e-09 Score=81.81 Aligned_cols=72 Identities=14% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCccccccccccccccccEEe-ccCCcchhHHHHHHHHhc---CC-CCCCCCC--CCCCCccchHhHHHHHHHHHHHHHh
Q 020624 167 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEI---NK-YDPACPV--CTLGEKKTHKLSERALKSEMESKAR 239 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~L-pCgH~Fh~~CI~~Wl~~~---~~-~~~~CPv--Cr~~~~~~~~L~~~~l~~e~~~k~r 239 (323)
+...|+||++.+. .++...| +|||.||.+||.+++... .. ....||. |+..........+..+..++..+.+
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCB-GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccc-cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 5678999999998 5544333 799999999999987642 11 2357999 9987333333444444344433333
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.76 E-value=1.1e-09 Score=93.14 Aligned_cols=48 Identities=25% Similarity=0.520 Sum_probs=40.5
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.+...|+||++.|. .++. ++|||.||..||..|+... ...||+||...
T Consensus 29 ~~~~~C~IC~~~~~-~pv~--~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLR-RPFQ--AQCGHRYCSFCLASILSSG---PQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHGGGS---CEECHHHHHTT
T ss_pred CcCcCCCCCChhhc-CcEE--CCCCCccCHHHHHHHHhcC---CCCCCCCCCcc
Confidence 37788999999998 6766 8999999999999999752 45899999753
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.73 E-value=3.2e-09 Score=104.06 Aligned_cols=49 Identities=27% Similarity=0.584 Sum_probs=40.4
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 221 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~ 221 (323)
....|+||++.+. .++. ++|||.||..||..|+... ...||+||..+..
T Consensus 331 ~~~~C~ICle~~~-~pv~--lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDK-DVKI--EPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBC-CEEE--ETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCC-CeEE--eCCCChhhHHHHHHHHhcC---CCCCCCCCCccCC
Confidence 3468999999987 5555 8999999999999999831 6689999987654
No 62
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=7.9e-09 Score=79.06 Aligned_cols=49 Identities=27% Similarity=0.549 Sum_probs=39.1
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
....|.||.+.|..+..- ..|+|.||..||.+||+... ..+||+|+...
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w 62 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYW 62 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCS--SCCCTTTCSCC
T ss_pred CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcC--CCCCCCCcCcC
Confidence 567899999999844333 47999999999999997632 37999999764
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=5.3e-09 Score=79.05 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=37.1
Q ss_pred CCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTH 223 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~ 223 (323)
+...|+||++.+. .++. ++|||. ||..|+.. ...||+||..+....
T Consensus 24 ~~~~C~IC~~~~~-~~~~--~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVF--VPCGHLVTCKQCAEA--------VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCC-CBCC--SSSCCCCBCHHHHHH--------CSBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCC-CEEE--ecCCCHHHHHHHhhC--------CCCCccCCceecCcE
Confidence 4567999999988 6666 899999 99999954 358999998775543
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.1e-08 Score=95.54 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=41.6
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCC--CCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPV--CTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPv--Cr~~~~ 220 (323)
.....|+||++.|. .||+ .+.|||+||..||..|+.... ...||+ |+....
T Consensus 179 ~~el~CPIcl~~f~-DPVt-s~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYE-APLI-SRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCS-SEEE-ESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEEC
T ss_pred ceeeECcCccCccc-CCee-eCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCc
Confidence 47789999999999 7875 248999999999999987522 468999 998543
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=4e-08 Score=73.37 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=38.6
Q ss_pred CCCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCccchHh
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHKL 225 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L 225 (323)
.+...|.||++.+. ..+. +||||. ||..|+.. ...||+||..+....++
T Consensus 13 ~~~~~C~IC~~~~~-~~v~--~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~~~i 62 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-NWVL--LPCRHTCLCDGCVKY--------FQQCPMCRQFVQESFAL 62 (68)
T ss_dssp CCSSCCSSSSSSCC-CCEE--TTTTBCCSCTTHHHH--------CSSCTTTCCCCCCEECC
T ss_pred CCCCCCCCcCcCCC-CEEE--ECCCChhhhHHHHhc--------CCCCCCCCcchhceEEe
Confidence 36788999999876 4444 899999 99999983 35899999987665543
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.42 E-value=1.9e-08 Score=77.23 Aligned_cols=46 Identities=24% Similarity=0.582 Sum_probs=36.9
Q ss_pred CCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTH 223 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~ 223 (323)
+...|.||++.+. ..+. +||||. ||..|+..| ..||+||..+....
T Consensus 17 ~~~~C~IC~~~~~-~~v~--~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 17 EAMLCMVCCEEEI-NSTF--CPCGHTVCCESCAAQL--------QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HHTBCTTTSSSBC-CEEE--ETTCBCCBCHHHHTTC--------SBCTTTCCBCCEEE
T ss_pred CCCEeEEeCcccC-cEEE--ECCCCHHHHHHHHHhc--------CcCCCCCchhhCeE
Confidence 4567999999877 5544 899999 999999875 27999998775543
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.41 E-value=8.7e-08 Score=70.28 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=39.2
Q ss_pred ccccccccccccccccEEe-ccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 169 QTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~L-pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
..|+||++.+. ++|+ + +|||+|...||++|+.+ +.+||+++....
T Consensus 4 ~~CpIs~~~m~-dPV~--~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPR-RPVL--SPKSRTIFEKSLLEQYVKD----TGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCS-SEEE--ETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCC
T ss_pred EEecCCCCCCC-CCEE--eCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCC
Confidence 57999999999 7876 7 89999999999999987 457999987653
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.36 E-value=3.6e-07 Score=66.86 Aligned_cols=50 Identities=24% Similarity=0.498 Sum_probs=38.6
Q ss_pred CCCccccccccccccccccEEeccC--C---cchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCG--H---LYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCg--H---~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
.+...|.||++... .+. ++||. | .||..||++|+.... ...||+|++.+.
T Consensus 4 ~~~~~CrIC~~~~~-~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NER--FRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS-CCC--CCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC-Cce--ecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 36778999998844 343 38865 4 999999999998643 578999998764
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.32 E-value=5.9e-08 Score=93.85 Aligned_cols=47 Identities=32% Similarity=0.675 Sum_probs=39.1
Q ss_pred CCccccccccccccccccEEeccCCc-chhHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 224 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~-Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~ 224 (323)
++..|+||++.+. .++. |||||. ||..|+..| ..||+||..+....+
T Consensus 294 ~~~~C~IC~~~~~-~~v~--lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 294 EERTCKVCMDKEV-SVVF--IPCGHLVVCQECAPSL--------RKCPICRGIIKGTVR 341 (345)
T ss_dssp TTCBCTTTSSSBC-CEEE--ETTCCEEECTTTGGGC--------SBCTTTCCBCCEEEE
T ss_pred CCCCCCccCCcCC-ceEE--cCCCChhHhHHHHhcC--------CcCCCCCCCccCeEE
Confidence 4678999999988 6665 899999 999999987 379999988765543
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.09 E-value=6.8e-07 Score=86.36 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=38.1
Q ss_pred CCcccccccccccccccc-----EEeccCCcchhHHHHHHHHhcCC-------CCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVV-----AVLTCGHLYHADCLENITAEINK-------YDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv-----~~LpCgH~Fh~~CI~~Wl~~~~~-------~~~~CPvCr~~~ 219 (323)
....|+||++.+.+...+ .-+.|||.||..||.+|+..... -...||.||.+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 567899999998852211 11479999999999999976321 014699999754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.80 E-value=1.3e-05 Score=64.45 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=36.0
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
-|.+|--.+. --.+.+||.|+||.+|+..|.++. ...||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeee
Confidence 4888876665 223558999999999999998653 679999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.83 E-value=0.00051 Score=63.00 Aligned_cols=48 Identities=27% Similarity=0.590 Sum_probs=36.9
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
....|.||.+....+..- -.|+|.||..|+..|+.... ...||.|+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~ 226 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNA--EPRCPHCNDY 226 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCS--SCBCTTTCCB
T ss_pred CCCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCC--CCCCCCCCCC
Confidence 467899999998833222 24999999999999996522 5689999864
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.73 E-value=0.0043 Score=48.53 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=28.2
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI 201 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~W 201 (323)
++..|.||++.+...++..-+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 56789999987543566555899999999999983
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.62 E-value=0.048 Score=40.24 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=35.9
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
....|.||.+. +.++.--.|...||..|+...+.........||.|....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 55679999753 343322258899999999987766544578999997643
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.34 E-value=0.091 Score=40.88 Aligned_cols=47 Identities=21% Similarity=0.618 Sum_probs=31.1
Q ss_pred CCCccccccccccccccccEEec---cCCcchhHHHHHH--HHh----------cCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLT---CGHLYHADCLENI--TAE----------INKYDPACPVCT 216 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~Lp---CgH~Fh~~CI~~W--l~~----------~~~~~~~CPvCr 216 (323)
..+..|.||- .|. .... +| |+-+||..|+.+. ++. .-....+||.|.
T Consensus 13 ~~D~~C~VC~-~~t-~~~l--~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 13 VNDEMCDVCE-VWT-AESL--FPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCSCCCTTTC-CCC-SSCC--SSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCcccCccc-ccc-ccce--eccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 3778999996 334 2333 44 8999999999995 111 112256899994
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.94 E-value=0.14 Score=55.25 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=49.1
Q ss_pred CCCccccccccccccccccEEeccC-CcchhHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEMES 236 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~~~~~L~~~~l~~e~~~ 236 (323)
.+...|+|-++.+. +||+ ++.| +.|-+.+|++|+.. +.+||+=|.+.......-+.+|+..++.
T Consensus 889 P~~F~cPIs~~lM~-DPVi--lpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~~liPN~~Lk~~I~~ 953 (968)
T 3m62_A 889 PDEFLDPLMYTIMK-DPVI--LPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLEDVTPNEELRQKILC 953 (968)
T ss_dssp CGGGBCTTTCSBCS-SEEE--CTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred cHHhCCcchhhHHh-CCeE--cCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 38899999999999 8988 9998 68999999999976 6799999887654332223445544443
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.57 E-value=0.045 Score=43.45 Aligned_cols=44 Identities=23% Similarity=0.551 Sum_probs=34.9
Q ss_pred CCccccccccccccccccEEeccC-CcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
.-..|-.|+-..+ ..+.|. |..|..|+...|.. ...||+|.++.
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~pL 71 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSV----SNRCPICKMPL 71 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSS----SSEETTTTEEC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhh----ccCCcccCCcC
Confidence 5567999996655 335676 99999999998876 67899998754
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.04 E-value=0.22 Score=34.17 Aligned_cols=48 Identities=25% Similarity=0.507 Sum_probs=31.2
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.|.||...-..+.++.--.|...||..|+..=+.........||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998653323333222588999999997644333334678999974
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.43 E-value=0.23 Score=35.77 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=34.3
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.++..|.||.+. +.++.--.|...||..|+..-+.........||.|..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 467789999863 3333222588999999999754443344788999964
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.53 E-value=0.2 Score=39.93 Aligned_cols=51 Identities=27% Similarity=0.552 Sum_probs=33.5
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.++..|.||.+.-...+.+.--.|+..||..|+...+.........||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 478899999876331222322369999999999886543223356777774
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=83.19 E-value=0.39 Score=42.17 Aligned_cols=52 Identities=17% Similarity=0.361 Sum_probs=33.6
Q ss_pred cccccccccccccc----ccEEeccCCcchhHHHHHHHH---hc----CCCCCCCCCCCCCCc
Q 020624 169 QTCGVCSKLLSELC----VVAVLTCGHLYHADCLENITA---EI----NKYDPACPVCTLGEK 220 (323)
Q Consensus 169 ~~C~ICle~~~~~~----vv~~LpCgH~Fh~~CI~~Wl~---~~----~~~~~~CPvCr~~~~ 220 (323)
..|+||...|.++. ++.--.|..-||..|+.---. .. ......||.|+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 46999999988554 333335889999999843110 00 001679999986543
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.05 E-value=0.19 Score=43.47 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
++..|.||.+. +..+.-=.|.-.||..|+..-+.........||.|+..
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 56789999854 34331124889999999987655433446889999853
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.04 E-value=0.18 Score=36.26 Aligned_cols=50 Identities=32% Similarity=0.533 Sum_probs=34.1
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
.++..|.||.+. +.++.--.|...||..|+..-+.........||.|...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 356789999863 33332225889999999986444433346789999753
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.71 E-value=0.24 Score=36.76 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=33.4
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
+...|.||........++.-=.|.--||..|+..-..........||.|+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 556799998775422333222588899999997644322223678999963
No 85
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=81.09 E-value=0.95 Score=33.99 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=33.6
Q ss_pred CCCCcccccccCccccCCCCCcccccc-CCCCCCchhhcc-cccCCCCCC
Q 020624 254 DSNSVVLDRHKGSWNEGKGPKMASSSS-LKSSSGKPFLKR-HFSFGSKGS 301 (323)
Q Consensus 254 ~~~~~~~~~~~~~~~~Gk~~k~~~S~~-~~~s~~~~~lr~-Hf~~~~~~~ 301 (323)
+.+.+.|+.|.+.. ..+++++|. +..+||..||+. |..++....
T Consensus 27 ~~~~v~C~~C~~~~----~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~ 72 (78)
T 2ffw_A 27 SAEKVLCQFCDQDP----AQDAVKTCVTCEVSYCDECLKATHPNKKPFTG 72 (78)
T ss_dssp SSCCCBCSSCCSSS----CCBCCEEETTTTEEECHHHHHHHSCCCSSSCS
T ss_pred CCCCccCCcCCCCC----CCCCeeEccCccchhhhhhhHhhcCCCCCCCC
Confidence 34567888887331 268999999 699999999998 988765443
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.94 E-value=2.4 Score=35.75 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=34.1
Q ss_pred CCCCccccccccccccccccEEeccCCcchhHHHHHHHH-----h--cCCCCCCCCCCCC
Q 020624 165 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITA-----E--INKYDPACPVCTL 217 (323)
Q Consensus 165 ~~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~-----~--~~~~~~~CPvCr~ 217 (323)
...+..|.||.+- +..+--=.|-.+||..||..-+. + .......||+|..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3467889999865 33331125889999999997542 1 1234789999974
No 87
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.80 E-value=0.5 Score=37.03 Aligned_cols=49 Identities=16% Similarity=0.444 Sum_probs=31.7
Q ss_pred CCccccccccccccccccEEec--cC-CcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~Lp--Cg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
+...| ||..... +.++.-=. |. .-||..|+. |.........||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 45567 9998754 44442223 54 579999997 333333478999998654
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.60 E-value=0.09 Score=37.16 Aligned_cols=49 Identities=33% Similarity=0.536 Sum_probs=33.5
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.++..|.||.+. +.++.--.|...||..|+..-+.........||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 467789999874 3443223588999999998644433334678998853
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.27 E-value=0.26 Score=43.58 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=33.9
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
++..|.||.+. +..+.-=.|...||..|+.+-+.........||.|+..
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 56779999854 33321124889999999987665444446889999863
No 90
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.95 E-value=2.9 Score=32.25 Aligned_cols=37 Identities=16% Similarity=0.392 Sum_probs=29.0
Q ss_pred CCCCccccccccccccccccEEecc----CCcchhHHHHHHHHh
Q 020624 165 SVDMQTCGVCSKLLSELCVVAVLTC----GHLYHADCLENITAE 204 (323)
Q Consensus 165 ~~~~~~C~ICle~~~~~~vv~~LpC----gH~Fh~~CI~~Wl~~ 204 (323)
......|.+|.+.|+ +... +.| +|.||..|-...++.
T Consensus 12 ~~a~l~CtlC~erLE-dtHF--VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLE-DTHF--VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCS-STTS--EECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhc-cCce--eeCCCccCCeeeccccHHHHHh
Confidence 346789999999999 4433 344 799999999998765
No 91
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=78.35 E-value=0.64 Score=34.57 Aligned_cols=49 Identities=16% Similarity=0.444 Sum_probs=31.4
Q ss_pred CCccccccccccccccccEEec--cC-CcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~Lp--Cg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
+...| ||..... +.++.-=. |. .-||..|+. |.........||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 45567 8988644 44332113 55 589999998 444333478999997654
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=76.64 E-value=3.4 Score=32.35 Aligned_cols=51 Identities=31% Similarity=0.508 Sum_probs=36.3
Q ss_pred CCccccccccccc---cccc-cEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCCCc
Q 020624 167 DMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 220 (323)
Q Consensus 167 ~~~~C~ICle~~~---~~~v-v~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~~ 220 (323)
....|.||-+..- ++.+ ++.--|+-..|..|.+-=..+ ....||.|+..++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke---G~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE---GTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT---SCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc---cCccccccCCccc
Confidence 5678999999854 2222 223358899999999875444 2779999987764
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.99 E-value=0.21 Score=35.70 Aligned_cols=48 Identities=33% Similarity=0.619 Sum_probs=33.1
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.++..|.||... +.++.--.|.-.||..|+..-+.........||.|.
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence 367789999874 344322358899999999864443333467899994
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=75.30 E-value=0.26 Score=35.61 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=34.4
Q ss_pred CCCcccccccccccc--ccccEEeccCCcchhHHHHHHHHh---cCCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAE---INKYDPACPVCTLG 218 (323)
Q Consensus 166 ~~~~~C~ICle~~~~--~~vv~~LpCgH~Fh~~CI~~Wl~~---~~~~~~~CPvCr~~ 218 (323)
.++..|.||...... +.++.--.|.-.||..|+..-+.. .......||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 367889999976432 222211258899999999873322 12347889999643
No 95
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.84 E-value=0.25 Score=35.55 Aligned_cols=52 Identities=19% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCCcccccccccccc-ccccEEeccCCcchhHHHHHHHHhc-CCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~-~~vv~~LpCgH~Fh~~CI~~Wl~~~-~~~~~~CPvCr~ 217 (323)
.+...|+||...+.+ ..++.--.|..-||..|+.--.... ......||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 467789999988752 3344334688899999986532211 123688999964
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.88 E-value=0.54 Score=36.65 Aligned_cols=49 Identities=22% Similarity=0.481 Sum_probs=33.7
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.+...|.||.+. +..+.--.|.-.||..|+.+=+.........||.|..
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 366789999864 3333112478889999998755443344778999975
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.75 E-value=0.26 Score=38.42 Aligned_cols=51 Identities=29% Similarity=0.447 Sum_probs=33.6
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.+...|.||...-....++.-=.|...||..|+..=+.........||.|.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 64 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCc
Confidence 467789999876432223311258899999999864433333467899994
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.38 E-value=2 Score=32.17 Aligned_cols=51 Identities=16% Similarity=0.362 Sum_probs=33.1
Q ss_pred CCccccccccccc-cccccEEeccCCcchhHHHHHHHHhc-CCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~-~~~vv~~LpCgH~Fh~~CI~~Wl~~~-~~~~~~CPvCr~~ 218 (323)
+...| ||...+. ...++.--.|..-||..|+.--.... ......||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 45566 9998874 23444334588899999996432221 1237899999864
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.05 E-value=2.7 Score=33.46 Aligned_cols=50 Identities=20% Similarity=0.484 Sum_probs=30.2
Q ss_pred CCcccccccccc------ccccccEEeccCCcchhHHHHH---HHHhcCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLL------SELCVVAVLTCGHLYHADCLEN---ITAEINKYDPACPVCT 216 (323)
Q Consensus 167 ~~~~C~ICle~~------~~~~vv~~LpCgH~Fh~~CI~~---Wl~~~~~~~~~CPvCr 216 (323)
....|.+|+..= ..+..+.--.|+..||..||.. ...........||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 345799998652 1123332235999999999952 2222223467788885
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.03 E-value=0.31 Score=35.54 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.++..|.||.+. +.++.--.|.-.||..|+..-+.........||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 467889999864 3333222588999999998644333334678999964
No 101
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=71.88 E-value=1.2 Score=34.96 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=32.3
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
+...| ||......+.++.--.|.--||..|+..=+.. ......||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH-IPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS-CCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC-CCCCEECCCCcCC
Confidence 44567 89876554444433358899999999752222 1226799999754
No 102
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.73 E-value=0.61 Score=40.81 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=31.9
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
+..|.||.+. +..+.--.|...||..|+..=+.........||.|+.
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 4569999854 3333223588999999997644333334678999975
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.98 E-value=1 Score=36.06 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=31.6
Q ss_pred cccccccccccccccc-EEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVV-AVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv-~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
..|.||.+.-.+...+ .--.|...||..|+..-+.........||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688888642212222 112488999999998755544444679999974
No 104
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=62.51 E-value=1.2 Score=32.78 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=29.3
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHhcCCC-CCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL 217 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~-~~~CPvCr~ 217 (323)
.|.||...-..+.++.-=.|...||..|+..=|...... ...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567777542212222111488999999998644433333 678999975
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.82 E-value=0.68 Score=35.72 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=32.3
Q ss_pred CCcccccccccccc--ccccEEeccCCcchhHHHHHHHHh----cCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAE----INKYDPACPVCT 216 (323)
Q Consensus 167 ~~~~C~ICle~~~~--~~vv~~LpCgH~Fh~~CI~~Wl~~----~~~~~~~CPvCr 216 (323)
+...|.||...-.. +.++--=.|...||..|+..-+.. .......|+.|.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~ 70 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence 45679999976321 122211148999999999875432 233478899995
No 106
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=60.83 E-value=1 Score=34.09 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=28.5
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHhcCCCC-CCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYD-PACPVCTL 217 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~-~~CPvCr~ 217 (323)
.|.||...-.....+.-=.|...||..|+..-|....... ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4666665422111221114889999999997655433334 78999974
No 107
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.67 E-value=1.2 Score=33.67 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=30.9
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCC-CCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL 217 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~-~~~CPvCr~ 217 (323)
..|.||...-..+.++.-=.|...||..|+..=|...... ...||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788998642222222112588999999998644433333 678999964
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=60.33 E-value=9.6 Score=31.51 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=33.2
Q ss_pred CCCCCccccccccccccccccEEeccCCcchhHHHHHH-----HHhc--CCCCCCCCCCCC
Q 020624 164 SSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI-----TAEI--NKYDPACPVCTL 217 (323)
Q Consensus 164 ~~~~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~W-----l~~~--~~~~~~CPvCr~ 217 (323)
....+..|.||.+- +..+--=.|-..||..||..- +.+. ......|++|+-
T Consensus 53 ~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 33466779999854 232211148899999999974 3332 234789999953
No 109
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=59.49 E-value=0.87 Score=32.55 Aligned_cols=47 Identities=19% Similarity=0.471 Sum_probs=29.8
Q ss_pred CCccccccccccccccccEEec--cC-CcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~Lp--Cg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
+...| ||.+... +.++.-=. |. .-||..|+. +.........||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556 9998654 44432223 55 589999998 3333334678999964
No 110
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=58.18 E-value=7.9 Score=37.49 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=32.4
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHh-cCCCCCCCCCCCCCCc
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE-INKYDPACPVCTLGEK 220 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~-~~~~~~~CPvCr~~~~ 220 (323)
.+.|+|-...+. .|+ +...|.|.-|.+- ..|+.. .+.....||+|.+...
T Consensus 249 SL~CPlS~~ri~-~Pv-Rg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK-YPS-KSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS-SEE-EETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc-ccC-cCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccC
Confidence 367998888877 453 4467999966553 233332 2234788999987654
No 111
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=58.07 E-value=0.9 Score=32.52 Aligned_cols=47 Identities=17% Similarity=0.467 Sum_probs=28.9
Q ss_pred CCccccccccccccccccEEec--cC-CcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~Lp--Cg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
+...| ||..... +.++.-=. |. .-||..|+. +.........||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44556 9988643 43331113 44 579999998 4443334778999954
No 112
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=57.09 E-value=1.1 Score=32.39 Aligned_cols=48 Identities=19% Similarity=0.422 Sum_probs=29.9
Q ss_pred CCccccccccccccccccEEec--cC-CcchhHHHHHHHHhcCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~Lp--Cg-H~Fh~~CI~~Wl~~~~~~~~~CPvCr~~ 218 (323)
+...| ||..... +.++.-=. |. .-||..|+. +.........||.|+..
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 44556 9998643 44332223 44 789999997 33333347789999653
No 113
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.22 E-value=0.77 Score=36.43 Aligned_cols=48 Identities=21% Similarity=0.484 Sum_probs=30.2
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.|.||.+.-.+..++.--.|...||..|+..-+.........||.|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 577887653322222222588999999998744433334678998854
No 114
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=53.41 E-value=11 Score=36.38 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=32.3
Q ss_pred CccccccccccccccccEEeccCCcchhHHHHHHHHh-cCCCCCCCCCCCCCCc
Q 020624 168 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE-INKYDPACPVCTLGEK 220 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~-~~~~~~~CPvCr~~~~ 220 (323)
...|+|-...+. .|+ +...|.|.-|.+- ..|+.. .+.....||+|.+...
T Consensus 215 SL~CPlS~~ri~-~P~-Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT-IPC-RAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS-SEE-EETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec-cCC-cCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccC
Confidence 467999888877 453 4467999955542 233332 1234788999987654
No 115
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=51.92 E-value=2.7 Score=35.58 Aligned_cols=50 Identities=22% Similarity=0.495 Sum_probs=32.1
Q ss_pred CCcccccccccccc-ccccEEeccCCcchhHHHHHHHHh-cCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAE-INKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~-~~vv~~LpCgH~Fh~~CI~~Wl~~-~~~~~~~CPvCr~ 217 (323)
+...| ||.....+ +.++.--.|..-||..|+.--... .......||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 55678 99987642 234433358889999999642221 1233779999974
No 116
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.54 E-value=2 Score=33.02 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=32.2
Q ss_pred CCCccccccccccc--cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLS--ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~--~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.++..|.||.+.-. .+.++.--.|.-.||..|+..-+ .......||.|..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 36788999997642 11222112488899999998632 2223778999964
No 117
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.15 E-value=3 Score=30.83 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCCccccccccccc--cccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLS--ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 166 ~~~~~C~ICle~~~--~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.+...|.||.+.-. .+..+.-=.|.-.||..|+..-. .......||.|+
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~ 64 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCL 64 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCc
Confidence 47788999987632 12222111588999999997532 222367899995
No 118
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=50.11 E-value=1.2 Score=32.78 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=32.7
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
+...| ||...+....++.--.|..-||..|+.--.. .......||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 66778 9998766334554445889999999865221 1123678999964
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=49.79 E-value=2 Score=38.90 Aligned_cols=49 Identities=18% Similarity=0.394 Sum_probs=27.9
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCC-CCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL 217 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~-~~~CPvCr~ 217 (323)
..|.||...=..+..+.-=.|...||..|+.+=|...... ...||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3688887642212222112488999999998744433333 678999964
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=49.76 E-value=4.6 Score=32.33 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCCccccccccccccccccEEe--ccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~L--pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.++..|.||.+. +.++.-= .|-..||..|+. |.........||.|.-
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 477889999843 3333111 366899999997 4443344678998754
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.59 E-value=9.4 Score=28.62 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=24.5
Q ss_pred CCCccccccccccccccccEE-eccCCcchhHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 200 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~-LpCgH~Fh~~CI~~ 200 (323)
.+...|.+|...|.....--. -.||.+||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 356689999999882221111 35999999999765
No 122
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=48.70 E-value=9.9 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCccccccccccccccccEE-eccCCcchhHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 200 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~-LpCgH~Fh~~CI~~ 200 (323)
.+...|.+|...|.....--. -.||++||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 466789999999983221111 25999999999765
No 123
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=47.62 E-value=2.3 Score=29.29 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=28.7
Q ss_pred cccccccccccc-cccEEe-ccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSEL-CVVAVL-TCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 170 ~C~ICle~~~~~-~vv~~L-pCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.|.||...+.++ ..+.-- .|.--||..|+.--..........||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 488998887522 233223 57778999998642221111378999995
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.26 E-value=9.2 Score=29.28 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCcccccccccccccccc-EEeccCCcchhHHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVV-AVLTCGHLYHADCLENI 201 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv-~~LpCgH~Fh~~CI~~W 201 (323)
+...|.+|...|.....- .--.||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 556799999998722211 11359999999998764
No 125
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.97 E-value=8.9 Score=31.19 Aligned_cols=34 Identities=26% Similarity=0.584 Sum_probs=23.8
Q ss_pred CCccccccccccccccccEE-eccCCcchhHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 200 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~-LpCgH~Fh~~CI~~ 200 (323)
+...|.+|...|.....-.. -.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 55689999999872211111 25999999999654
No 126
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.86 E-value=12 Score=27.41 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=22.8
Q ss_pred CccccccccccccccccEE-eccCCcchhHHHHH
Q 020624 168 MQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 200 (323)
Q Consensus 168 ~~~C~ICle~~~~~~vv~~-LpCgH~Fh~~CI~~ 200 (323)
...|.+|...|.....--. -.||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3579999999872221111 25999999999754
No 127
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.75 E-value=2.8 Score=33.49 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=28.4
Q ss_pred cccccccccccc-------ccccEEeccCCcchhHHHHHHHH---hcCCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSE-------LCVVAVLTCGHLYHADCLENITA---EINKYDPACPVCT 216 (323)
Q Consensus 169 ~~C~ICle~~~~-------~~vv~~LpCgH~Fh~~CI~~Wl~---~~~~~~~~CPvCr 216 (323)
..|.||+..-.. +..+.--.|+..||..|+..... ........||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 469999875411 12222235999999999976421 1112356677764
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=45.20 E-value=12 Score=28.66 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=24.5
Q ss_pred CCCccccccccccccccccE-EeccCCcchhHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVA-VLTCGHLYHADCLEN 200 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~-~LpCgH~Fh~~CI~~ 200 (323)
.+...|.+|...|.....-- --.||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 35668999999988222111 135999999999765
No 129
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.80 E-value=11 Score=28.42 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=24.0
Q ss_pred CCCccccccccccccccccEE-eccCCcchhHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN 200 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~-LpCgH~Fh~~CI~~ 200 (323)
.+...|.+|...|.....--. -.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 456689999999872221111 35999999999654
No 130
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=44.11 E-value=5.3 Score=25.64 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=12.0
Q ss_pred CCCccccccccccc
Q 020624 166 VDMQTCGVCSKLLS 179 (323)
Q Consensus 166 ~~~~~C~ICle~~~ 179 (323)
.+...|+||+..|.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 36689999999988
No 131
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.48 E-value=1.6 Score=32.03 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=31.5
Q ss_pred CCccccccccccccc-cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~-~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
+...| ||.....++ .++.--.|..-||..|+.--..........||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 45678 798875433 344334588889999986522111234678999963
No 132
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=42.21 E-value=11 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.636 Sum_probs=24.4
Q ss_pred CCCccccccccccccccccEEecc-CCcchhHHHHHH
Q 020624 166 VDMQTCGVCSKLLSELCVVAVLTC-GHLYHADCLENI 201 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~LpC-gH~Fh~~CI~~W 201 (323)
.+..-|.||.+.-. ++-+-| |-+||..|..+.
T Consensus 6 ee~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDAT----LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCCC----EEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCCe----EEecCCCCceehHHHHHHH
Confidence 35677999998733 555678 899999998773
No 133
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=40.77 E-value=3.2 Score=32.29 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=28.1
Q ss_pred CCccccccccccccccccEEeccC---CcchhHHHHHHHHhcCCCCCCCCC-CC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCG---HLYHADCLENITAEINKYDPACPV-CT 216 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCg---H~Fh~~CI~~Wl~~~~~~~~~CPv-Cr 216 (323)
+...| ||..... +.++.-=.|. .-||..|+. |.........||. |+
T Consensus 25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 44566 9997644 4433222343 579999996 3332234788999 85
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.72 E-value=11 Score=33.26 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=23.6
Q ss_pred CCccccccccccccccccE-EeccCCcchhHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVVA-VLTCGHLYHADCLEN 200 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~-~LpCgH~Fh~~CI~~ 200 (323)
+...|.+|...|.-...-. -=.||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4578999999987221111 125999999999654
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.69 E-value=11 Score=33.40 Aligned_cols=34 Identities=18% Similarity=0.547 Sum_probs=24.0
Q ss_pred CCcccccccccccccccc-EEeccCCcchhHHHHH
Q 020624 167 DMQTCGVCSKLLSELCVV-AVLTCGHLYHADCLEN 200 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv-~~LpCgH~Fh~~CI~~ 200 (323)
+...|.+|...|.-...- .--.||++||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 556899999998722211 1135999999999765
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=39.90 E-value=13 Score=30.34 Aligned_cols=48 Identities=15% Similarity=0.405 Sum_probs=28.0
Q ss_pred CCCCCccccccccccccccccE-EeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 164 SSVDMQTCGVCSKLLSELCVVA-VLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 164 ~~~~~~~C~ICle~~~~~~vv~-~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
|..+...|.+|...|.....-- --.||.+||..|....... ..+|-.|
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C 63 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLC 63 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHH
Confidence 4446678999999987222111 1359999999997665433 4567777
No 137
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.75 E-value=1.9 Score=34.54 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=30.3
Q ss_pred cccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 170 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 170 ~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
.|.||...-..+.++.--.|...||..|+..=+.........||.|.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence 58888775332333322258899999999864443333467799995
No 138
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=38.62 E-value=16 Score=22.38 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=19.9
Q ss_pred ccccccccccccccccEEeccCCcchhHH
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADC 197 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~C 197 (323)
..|+.|.+..-....+ ..=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGG
T ss_pred CcCCccCCEEecceeE--EECCeEecccC
Confidence 4699999875534433 56799999998
No 139
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.54 E-value=7.4 Score=37.18 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=0.0
Q ss_pred CCcccccccccccccc-ccEEeccCCcchhHHHHHHHHhc---CCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELC-VVAVLTCGHLYHADCLENITAEI---NKYDPACPVC 215 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~-vv~~LpCgH~Fh~~CI~~Wl~~~---~~~~~~CPvC 215 (323)
+...|.+|...|.... ...--.||++||..|....+.-. .+...+|-.|
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C 426 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGC 426 (434)
T ss_dssp -----------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHH
Confidence 4578999999887221 11124699999999998755321 1123456666
No 140
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=36.16 E-value=15 Score=31.12 Aligned_cols=49 Identities=20% Similarity=0.416 Sum_probs=33.1
Q ss_pred CCCccccccccccccc--cccEEeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSEL--CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~--~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.++..|.+|...|.-. ....-..|.|.+|..|-. |+.. .....|-+|..
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~--~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPE--EQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSS--SSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCC--CCcEeeHHHHH
Confidence 3678999999987622 222224699999999972 4322 23667888864
No 141
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.37 E-value=11 Score=26.97 Aligned_cols=43 Identities=23% Similarity=0.480 Sum_probs=27.7
Q ss_pred ccccccccccccccccEEeccCCcchhHHHHHHHHhcCCCCCCCCCC
Q 020624 169 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 215 (323)
Q Consensus 169 ~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvC 215 (323)
..|-.|+..|.+..+.+--.|++.||.+|=.= + ... -..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f-i-He~--Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF-V-HDS--LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT-T-TTT--SCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH-H-Hhh--ccCCcCC
Confidence 35999999986333232345999999999322 2 211 3479988
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.83 E-value=20 Score=29.57 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCCccccccccccccccccE--EeccCCcchhHHHHHHHHhcCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVA--VLTCGHLYHADCLENITAEINKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~--~LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~ 217 (323)
.++..|.+|...|.-....+ -..|.|.+|..|-..-..........|-+|++
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 47789999999984122222 24699999999954321111122456888853
No 143
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.49 E-value=24 Score=25.78 Aligned_cols=50 Identities=26% Similarity=0.603 Sum_probs=32.0
Q ss_pred CCccccccccccccccccEEeccCCcchhHHHHHHHHh-----cCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE-----INKYDPACPVCTL 217 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCgH~Fh~~CI~~Wl~~-----~~~~~~~CPvCr~ 217 (323)
+...| ||...+....++.--.|..-||..|+.--... .......||.|+.
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 44567 89988763445544468899999998532111 0123789999964
No 144
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.31 E-value=20 Score=28.46 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHh
Q 020624 192 LYHADCLENITAE 204 (323)
Q Consensus 192 ~Fh~~CI~~Wl~~ 204 (323)
-||+.|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 145
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.69 E-value=21 Score=28.32 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHh
Q 020624 192 LYHADCLENITAE 204 (323)
Q Consensus 192 ~Fh~~CI~~Wl~~ 204 (323)
-||+.|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 146
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.83 E-value=4.3 Score=30.44 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=12.5
Q ss_pred ccCCcchhHHHHHH
Q 020624 188 TCGHLYHADCLENI 201 (323)
Q Consensus 188 pCgH~Fh~~CI~~W 201 (323)
.|||.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999998877
No 147
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.22 E-value=40 Score=32.73 Aligned_cols=49 Identities=14% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCCccccccccccccccccEEe--ccCCcchhHHHHHHHHh------cCCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAE------INKYDPACPVCTL 217 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~~vv~~L--pCgH~Fh~~CI~~Wl~~------~~~~~~~CPvCr~ 217 (323)
..+..|.||-+- +.++.-= .|...||..||...+-. .......|=+|.-
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 355678887753 3333212 58899999999998721 1123678999964
No 148
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.00 E-value=15 Score=26.95 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=27.6
Q ss_pred CCccccccccccccccccEEeccC---CcchhHHHHHHHHhcCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVLTCG---HLYHADCLENITAEINKYDPACPVCT 216 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~LpCg---H~Fh~~CI~~Wl~~~~~~~~~CPvCr 216 (323)
+...| ||..... +.++.--.|. .-||..|+.- .........||.|+
T Consensus 5 ~~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~ 53 (70)
T 1x4i_A 5 SSGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCT 53 (70)
T ss_dssp CCCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHH
T ss_pred CCeEE-EcCCCCC-CCEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCC
Confidence 34445 6887643 4444222342 6799999973 33233467899995
No 149
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=24.64 E-value=31 Score=24.82 Aligned_cols=51 Identities=16% Similarity=0.399 Sum_probs=29.4
Q ss_pred CCCccccccccccccc-cccEEe-ccCCcchhHHHHHHH------HhcCCCCCCCCCCC
Q 020624 166 VDMQTCGVCSKLLSEL-CVVAVL-TCGHLYHADCLENIT------AEINKYDPACPVCT 216 (323)
Q Consensus 166 ~~~~~C~ICle~~~~~-~vv~~L-pCgH~Fh~~CI~~Wl------~~~~~~~~~CPvCr 216 (323)
.....|++|...+.++ ..+.-- .|.--||..|+.--- .........||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3566899999987633 233223 577889999985421 11111256788774
No 150
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=22.72 E-value=63 Score=27.60 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=24.3
Q ss_pred hhccccccccCCCCCCCcccccccCccccC
Q 020624 241 NKRWKNRIVDSNLDSNSVVLDRHKGSWNEG 270 (323)
Q Consensus 241 ~k~~rn~vld~~~~~~~~~~~~~~~~~~~G 270 (323)
++...++++|.++++. ++++++.+.++..
T Consensus 8 ~~y~v~vTLDp~TA~~-l~lSed~r~Vr~~ 36 (186)
T 3uv9_A 8 RRYWVDVTLATNNISH-AVIAEDKRQVSSR 36 (186)
T ss_dssp GGGCCCCCCCCCSSCC-CEECTTSSCEECC
T ss_pred heeEEEeEeCCCCcCC-ceECCCCCEEeec
Confidence 3778899999999996 8899999888643
No 151
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=22.33 E-value=42 Score=33.50 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=26.3
Q ss_pred hhccccccccCCCCCCCcccccccCccccCCCC
Q 020624 241 NKRWKNRIVDSNLDSNSVVLDRHKGSWNEGKGP 273 (323)
Q Consensus 241 ~k~~rn~vld~~~~~~~~~~~~~~~~~~~Gk~~ 273 (323)
.+...+++||.++++. +++++|.+.+++|...
T Consensus 406 ~~~~v~vtldp~ta~~-l~~s~d~r~v~~~~~~ 437 (602)
T 4b3n_A 406 RRYWVDVTLATNNISH-AVIAEDKRQVSSRNPQ 437 (602)
T ss_dssp HTTBCCCCEECCSCCS-CEECTTSSEEECCCC-
T ss_pred HheEEEEEeCCCCCCc-eeEecCCCEEEECCcc
Confidence 3567789999999995 7789999999988754
No 152
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.09 E-value=43 Score=26.72 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=15.5
Q ss_pred eccCCcchhHHHHHHHHhcCCCCCCCCCCCCCC
Q 020624 187 LTCGHLYHADCLENITAEINKYDPACPVCTLGE 219 (323)
Q Consensus 187 LpCgH~Fh~~CI~~Wl~~~~~~~~~CPvCr~~~ 219 (323)
..||+.|. ........||.|+...
T Consensus 71 ~~CG~~F~---------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK---------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC---------CCSSCCSSCSSSCCCC
T ss_pred hhCcCeec---------ccCCCCCCCcCCCCCc
Confidence 56999991 1112256899998654
No 153
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.79 E-value=42 Score=24.70 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCccccccccccccccccEEe--ccCCcchhHHHHHHHHh-----cCCCCCCCCCCCCC
Q 020624 167 DMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAE-----INKYDPACPVCTLG 218 (323)
Q Consensus 167 ~~~~C~ICle~~~~~~vv~~L--pCgH~Fh~~CI~~Wl~~-----~~~~~~~CPvCr~~ 218 (323)
+...| ||......+.++.-= .|..-||..|+.---.. .......||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45667 899875545555433 68899999998541111 01136789999643
Done!