Query 020625
Match_columns 323
No_of_seqs 137 out of 1397
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:52:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00247 adenosine kinase; Pro 100.0 1.2E-50 2.6E-55 362.0 36.1 320 3-322 4-342 (345)
2 PLN02548 adenosine kinase 100.0 5.4E-47 1.2E-51 337.2 33.6 297 26-322 35-331 (332)
3 cd01168 adenosine_kinase Adeno 100.0 1.6E-47 3.5E-52 337.8 29.8 293 5-317 2-312 (312)
4 KOG2854 Possible pfkB family c 100.0 6.4E-46 1.4E-50 309.2 29.9 317 6-322 8-342 (343)
5 PRK11142 ribokinase; Provision 100.0 5.7E-47 1.2E-51 333.7 21.7 292 5-321 3-298 (306)
6 PLN02813 pfkB-type carbohydrat 100.0 8.9E-45 1.9E-49 329.4 32.1 296 4-316 69-393 (426)
7 PTZ00292 ribokinase; Provision 100.0 5E-46 1.1E-50 330.3 23.2 299 3-321 14-319 (326)
8 cd01174 ribokinase Ribokinase 100.0 2.1E-45 4.5E-50 321.8 25.9 286 6-316 1-288 (292)
9 PLN02341 pfkB-type carbohydrat 100.0 1.1E-43 2.3E-48 326.8 29.7 298 4-321 72-402 (470)
10 PLN02379 pfkB-type carbohydrat 100.0 7.1E-43 1.5E-47 312.2 31.9 296 3-317 18-344 (367)
11 PRK15074 inosine/guanosine kin 100.0 1.5E-42 3.2E-47 312.7 32.1 296 4-317 33-417 (434)
12 cd01945 ribokinase_group_B Rib 100.0 1.7E-43 3.6E-48 308.5 25.1 277 6-315 1-279 (284)
13 cd01944 YegV_kinase_like YegV- 100.0 3.5E-43 7.6E-48 307.1 26.7 284 6-313 1-289 (289)
14 PRK09850 pseudouridine kinase; 100.0 4.8E-43 1E-47 309.2 25.0 289 1-315 1-293 (313)
15 TIGR02152 D_ribokin_bact ribok 100.0 5.3E-43 1.2E-47 306.6 25.0 288 11-322 1-292 (293)
16 PF00294 PfkB: pfkB family car 100.0 1.7E-43 3.7E-48 311.0 21.3 292 5-317 2-297 (301)
17 PRK09434 aminoimidazole ribosi 100.0 2.7E-42 5.9E-47 303.5 28.0 282 5-322 3-303 (304)
18 PLN02323 probable fructokinase 100.0 1.4E-42 3.1E-47 308.5 26.2 293 3-321 9-320 (330)
19 PLN02967 kinase 100.0 2.8E-42 6.1E-47 317.1 27.7 305 4-321 196-540 (581)
20 COG0524 RbsK Sugar kinases, ri 100.0 3.2E-42 6.9E-47 304.1 26.6 293 6-320 1-301 (311)
21 cd01172 RfaE_like RfaE encodes 100.0 6.9E-43 1.5E-47 307.5 22.2 293 6-319 1-299 (304)
22 cd01166 KdgK 2-keto-3-deoxyglu 100.0 6.6E-42 1.4E-46 299.9 27.6 283 6-314 1-293 (294)
23 cd01167 bac_FRK Fructokinases 100.0 1.1E-41 2.4E-46 298.6 27.4 279 6-314 1-294 (295)
24 cd01942 ribokinase_group_A Rib 100.0 6.4E-42 1.4E-46 297.7 25.7 276 6-314 1-278 (279)
25 TIGR02198 rfaE_dom_I rfaE bifu 100.0 2.7E-42 5.8E-47 305.1 22.8 296 3-321 6-309 (315)
26 PRK09954 putative kinase; Prov 100.0 4.9E-42 1.1E-46 308.4 24.7 289 5-320 58-351 (362)
27 cd01947 Guanosine_kinase_like 100.0 1.1E-41 2.5E-46 293.9 25.5 263 6-314 1-264 (265)
28 TIGR03828 pfkB 1-phosphofructo 100.0 6E-42 1.3E-46 301.5 23.4 288 9-322 4-295 (304)
29 cd01940 Fructoselysine_kinase_ 100.0 2.2E-41 4.8E-46 291.9 25.9 261 6-314 1-263 (264)
30 cd01939 Ketohexokinase Ketohex 100.0 1.6E-41 3.4E-46 296.7 24.8 278 6-314 1-289 (290)
31 PLN02543 pfkB-type carbohydrat 100.0 7.2E-41 1.6E-45 305.3 25.5 304 4-322 125-483 (496)
32 cd01943 MAK32 MAK32 kinase. M 100.0 5.2E-41 1.1E-45 296.9 23.2 288 6-314 1-304 (328)
33 PRK09513 fruK 1-phosphofructok 100.0 1.1E-40 2.3E-45 294.2 24.1 294 1-321 1-298 (312)
34 cd01941 YeiC_kinase_like YeiC- 100.0 1.7E-40 3.7E-45 290.1 23.9 283 6-311 1-288 (288)
35 PRK10294 6-phosphofructokinase 100.0 1.7E-40 3.7E-45 292.6 23.1 291 6-320 4-298 (309)
36 PRK09813 fructoselysine 6-kina 100.0 4.5E-40 9.8E-45 282.9 24.0 258 5-314 1-259 (260)
37 cd01164 FruK_PfkB_like 1-phosp 100.0 4.1E-40 8.9E-45 287.7 24.1 282 6-314 2-288 (289)
38 TIGR03168 1-PFK hexose kinase, 100.0 3.6E-40 7.7E-45 290.0 23.4 288 8-321 3-294 (303)
39 PRK13508 tagatose-6-phosphate 100.0 3.6E-40 7.9E-45 290.5 23.4 288 6-318 2-293 (309)
40 KOG2855 Ribokinase [Carbohydra 100.0 3E-40 6.5E-45 279.1 21.7 297 3-322 8-320 (330)
41 TIGR01231 lacC tagatose-6-phos 100.0 1.9E-39 4.1E-44 285.9 23.6 288 7-318 2-293 (309)
42 COG1105 FruK Fructose-1-phosph 100.0 4.8E-38 1E-42 265.9 23.1 290 6-320 2-295 (310)
43 PRK11316 bifunctional heptose 100.0 1.8E-38 4E-43 295.0 21.5 294 4-321 10-307 (473)
44 cd01946 ribokinase_group_C Rib 100.0 4.4E-36 9.6E-41 260.6 25.9 266 6-314 1-275 (277)
45 KOG2947 Carbohydrate kinase [C 100.0 6.3E-37 1.4E-41 243.4 18.1 290 1-314 1-298 (308)
46 cd01937 ribokinase_group_D Rib 100.0 1.2E-35 2.6E-40 254.7 24.7 251 6-310 1-254 (254)
47 PLN02630 pfkB-type carbohydrat 100.0 3.7E-35 7.9E-40 258.2 23.7 254 3-314 10-277 (335)
48 COG2870 RfaE ADP-heptose synth 100.0 2.2E-34 4.8E-39 245.3 16.8 287 4-315 10-300 (467)
49 cd00287 ribokinase_pfkB_like r 100.0 4.8E-29 1E-33 205.4 16.8 195 6-289 1-196 (196)
50 cd01173 pyridoxal_pyridoxamine 99.8 6.1E-19 1.3E-23 151.1 14.9 165 138-311 71-251 (254)
51 PRK12412 pyridoxal kinase; Rev 99.8 3.3E-18 7.2E-23 147.2 17.1 160 140-311 73-246 (268)
52 TIGR00097 HMP-P_kinase phospho 99.8 4E-18 8.7E-23 145.8 16.8 162 139-312 67-241 (254)
53 TIGR00687 pyridox_kin pyridoxa 99.8 4E-18 8.6E-23 148.4 14.7 163 137-309 72-254 (286)
54 PRK05756 pyridoxamine kinase; 99.8 4.7E-18 1E-22 147.9 14.6 166 137-312 72-256 (286)
55 PRK06427 bifunctional hydroxy- 99.8 1.3E-17 2.9E-22 143.7 16.9 162 139-312 73-249 (266)
56 cd01169 HMPP_kinase 4-amino-5- 99.8 2.4E-17 5.2E-22 140.2 17.1 161 139-311 68-241 (242)
57 PRK12413 phosphomethylpyrimidi 99.8 1.8E-17 4E-22 141.8 16.3 150 153-312 81-243 (253)
58 PRK07105 pyridoxamine kinase; 99.7 2.8E-17 6E-22 142.9 14.2 162 139-313 75-257 (284)
59 PRK08176 pdxK pyridoxal-pyrido 99.7 3.9E-17 8.5E-22 141.4 15.1 161 138-311 87-266 (281)
60 PRK08573 phosphomethylpyrimidi 99.7 4.9E-17 1.1E-21 149.4 15.5 150 153-311 82-244 (448)
61 PRK12616 pyridoxal kinase; Rev 99.7 1E-16 2.2E-21 138.1 16.2 161 139-311 74-249 (270)
62 PLN02898 HMP-P kinase/thiamin- 99.6 5.2E-14 1.1E-18 131.6 16.4 162 139-312 78-254 (502)
63 PTZ00347 phosphomethylpyrimidi 99.6 1.3E-13 2.9E-18 128.9 16.6 148 153-311 310-478 (504)
64 PTZ00344 pyridoxal kinase; Pro 99.6 1.7E-13 3.7E-18 119.7 16.0 158 142-312 79-259 (296)
65 cd01171 YXKO-related B.subtili 99.6 1.2E-13 2.5E-18 118.3 14.6 162 135-312 73-236 (254)
66 COG0351 ThiD Hydroxymethylpyri 99.6 1.6E-13 3.6E-18 114.1 14.9 149 153-310 83-244 (263)
67 PF08543 Phos_pyr_kin: Phospho 99.5 1.6E-13 3.5E-18 116.6 14.3 161 139-311 60-234 (246)
68 KOG3009 Predicted carbohydrate 99.5 2.8E-13 6.1E-18 118.2 13.1 247 5-311 341-600 (614)
69 PRK09517 multifunctional thiam 99.5 5.3E-13 1.2E-17 130.0 15.4 160 140-311 311-484 (755)
70 cd01170 THZ_kinase 4-methyl-5- 99.5 1.2E-12 2.6E-17 110.6 15.2 167 133-310 43-221 (242)
71 PRK14713 multifunctional hydro 99.5 1E-12 2.2E-17 123.5 15.3 158 140-309 99-270 (530)
72 TIGR00196 yjeF_cterm yjeF C-te 99.4 1.3E-11 2.8E-16 106.6 17.4 161 135-312 88-251 (272)
73 PLN02978 pyridoxal kinase 99.4 7.5E-12 1.6E-16 109.7 15.0 162 140-311 87-267 (308)
74 COG2240 PdxK Pyridoxal/pyridox 99.2 2.3E-10 4.9E-15 96.0 12.8 161 136-310 70-249 (281)
75 PTZ00493 phosphomethylpyrimidi 99.2 4.6E-10 9.9E-15 97.5 15.0 160 140-311 74-285 (321)
76 PRK09355 hydroxyethylthiazole 99.1 3.2E-09 7E-14 91.0 15.7 164 133-309 48-224 (263)
77 TIGR00694 thiM hydroxyethylthi 99.0 2.4E-08 5.3E-13 84.9 14.5 164 133-309 43-219 (249)
78 KOG2598 Phosphomethylpyrimidin 98.5 2E-06 4.4E-11 75.6 11.9 161 140-312 93-284 (523)
79 KOG2599 Pyridoxal/pyridoxine/p 98.5 2.6E-06 5.7E-11 70.4 11.1 156 138-304 80-256 (308)
80 PF02110 HK: Hydroxyethylthiaz 98.0 0.00063 1.4E-08 57.1 15.6 159 133-304 43-214 (246)
81 PRK03979 ADP-specific phosphof 97.9 0.0015 3.2E-08 59.7 18.4 76 139-214 222-310 (463)
82 PF01256 Carb_kinase: Carbohyd 97.9 0.00043 9.2E-09 58.5 12.9 159 134-309 62-220 (242)
83 PRK14039 ADP-dependent glucoki 97.8 0.0014 3.1E-08 59.6 16.7 172 36-214 84-298 (453)
84 KOG3974 Predicted sugar kinase 97.8 0.00063 1.4E-08 56.3 12.9 166 135-314 97-270 (306)
85 PRK10565 putative carbohydrate 97.8 0.00091 2E-08 62.8 15.7 154 135-307 316-471 (508)
86 COG2145 ThiM Hydroxyethylthiaz 97.7 0.002 4.4E-08 53.7 14.5 158 134-302 50-219 (265)
87 PF04587 ADP_PFK_GK: ADP-speci 97.7 0.0011 2.3E-08 61.1 13.2 167 40-213 92-295 (444)
88 TIGR02045 P_fruct_ADP ADP-spec 97.6 0.0039 8.5E-08 56.7 16.2 77 138-214 208-296 (446)
89 PRK14038 ADP-dependent glucoki 97.6 0.0052 1.1E-07 56.0 16.4 79 135-214 220-304 (453)
90 COG0063 Predicted sugar kinase 96.2 0.18 3.9E-06 43.6 13.4 149 137-302 99-251 (284)
91 cd01938 ADPGK_ADPPFK ADP-depen 95.8 0.13 2.9E-06 47.3 11.1 170 37-214 100-290 (445)
92 COG4809 Archaeal ADP-dependent 92.7 4.1 8.9E-05 36.5 12.7 79 135-213 221-311 (466)
93 PRK10076 pyruvate formate lyas 89.9 1.9 4.2E-05 35.7 7.7 68 139-210 38-110 (213)
94 KOG4184 Predicted sugar kinase 87.2 6.8 0.00015 34.6 9.4 165 36-210 136-317 (478)
95 TIGR01768 GGGP-family geranylg 79.0 6.4 0.00014 32.8 5.9 51 138-199 26-76 (223)
96 COG1180 PflA Pyruvate-formate 77.0 24 0.00053 30.2 9.1 81 139-226 83-168 (260)
97 COG1618 Predicted nucleotide k 75.3 17 0.00037 28.6 6.9 114 62-175 7-137 (179)
98 PRK04169 geranylgeranylglycery 75.1 10 0.00022 31.9 6.1 52 137-199 30-81 (232)
99 COG1646 Predicted phosphate-bi 70.4 14 0.0003 30.8 5.6 51 138-199 40-91 (240)
100 COG1922 WecG Teichoic acid bio 70.1 18 0.00038 30.8 6.4 101 131-246 56-171 (253)
101 TIGR00696 wecB_tagA_cpsF bacte 68.3 47 0.001 26.6 8.3 17 155-171 35-51 (177)
102 PF03808 Glyco_tran_WecB: Glyc 67.0 34 0.00074 27.1 7.3 15 156-170 36-50 (172)
103 TIGR00334 5S_RNA_mat_M5 ribonu 66.7 46 0.001 26.5 7.7 84 139-226 22-105 (174)
104 TIGR02494 PFLE_PFLC glycyl-rad 65.1 36 0.00078 29.6 7.8 55 141-199 127-181 (295)
105 PHA00438 hypothetical protein 62.3 6.3 0.00014 26.3 1.8 18 273-290 46-63 (81)
106 COG0036 Rpe Pentose-5-phosphat 59.6 24 0.00053 29.2 5.2 52 139-200 84-137 (220)
107 PF10649 DUF2478: Protein of u 58.7 86 0.0019 24.6 7.9 101 77-177 18-132 (159)
108 PRK05968 hypothetical protein; 58.1 1.5E+02 0.0032 27.0 11.1 40 137-176 145-185 (389)
109 TIGR01769 GGGP geranylgeranylg 57.1 36 0.00077 28.0 5.8 50 139-199 24-74 (205)
110 COG2873 MET17 O-acetylhomoseri 56.4 79 0.0017 28.6 8.1 108 56-201 97-205 (426)
111 PF10911 DUF2717: Protein of u 55.9 9.2 0.0002 25.5 1.8 20 272-291 45-64 (77)
112 cd06533 Glyco_transf_WecG_TagA 55.0 88 0.0019 24.8 7.7 14 153-166 55-68 (171)
113 COG1159 Era GTPase [General fu 53.9 1.5E+02 0.0033 25.9 12.6 142 60-203 3-155 (298)
114 PRK05967 cystathionine beta-ly 53.6 1.3E+02 0.0027 27.7 9.4 38 139-176 149-187 (395)
115 PF01118 Semialdhyde_dh: Semia 53.5 87 0.0019 23.0 8.6 39 135-179 62-100 (121)
116 TIGR02493 PFLA pyruvate format 51.9 80 0.0017 26.3 7.5 59 141-201 67-125 (235)
117 PF01884 PcrB: PcrB family; I 51.4 30 0.00064 29.0 4.5 50 138-199 31-80 (230)
118 PRK06702 O-acetylhomoserine am 51.0 91 0.002 29.0 8.2 36 139-176 147-185 (432)
119 COG1244 Predicted Fe-S oxidore 50.1 1E+02 0.0023 27.2 7.7 86 143-228 106-201 (358)
120 PF02571 CbiJ: Precorrin-6x re 47.6 43 0.00092 28.5 5.1 30 217-252 116-145 (249)
121 PRK09028 cystathionine beta-ly 47.4 1.4E+02 0.0029 27.5 8.6 38 138-175 145-183 (394)
122 COG4607 CeuA ABC-type enteroch 46.0 47 0.001 29.0 5.0 60 138-209 117-176 (320)
123 PRK06598 aspartate-semialdehyd 45.9 1.7E+02 0.0036 26.6 8.7 96 62-179 3-101 (369)
124 PRK06928 pyrroline-5-carboxyla 45.5 2E+02 0.0043 24.8 9.6 34 271-304 169-208 (277)
125 KOG0174 20S proteasome, regula 45.0 23 0.00051 28.4 2.8 42 273-314 146-188 (224)
126 PRK09722 allulose-6-phosphate 44.7 59 0.0013 27.3 5.4 53 139-200 82-136 (229)
127 PF04230 PS_pyruv_trans: Polys 43.6 1.2E+02 0.0026 25.2 7.5 132 69-209 2-142 (286)
128 PF10087 DUF2325: Uncharacteri 39.8 77 0.0017 22.3 4.7 39 135-175 44-82 (97)
129 TIGR02826 RNR_activ_nrdG3 anae 39.4 1.6E+02 0.0035 22.7 6.8 57 141-204 63-119 (147)
130 PRK13397 3-deoxy-7-phosphohept 39.1 1.9E+02 0.004 24.7 7.5 40 154-200 65-104 (250)
131 PRK07582 cystathionine gamma-l 39.0 2.9E+02 0.0064 24.9 9.6 55 37-93 67-121 (366)
132 PF11469 Ribonucleas_3_2: Ribo 38.5 42 0.0009 24.0 2.9 30 271-300 53-83 (120)
133 PF01113 DapB_N: Dihydrodipico 38.4 1.6E+02 0.0035 21.7 7.2 116 63-199 3-120 (124)
134 PF02659 DUF204: Domain of unk 38.4 79 0.0017 20.4 4.3 24 278-302 4-27 (67)
135 PRK00278 trpC indole-3-glycero 38.3 2.5E+02 0.0055 24.0 8.6 61 136-205 130-191 (260)
136 COG3414 SgaB Phosphotransferas 38.2 56 0.0012 23.0 3.7 61 141-208 3-63 (93)
137 TIGR03128 RuMP_HxlA 3-hexulose 37.3 1.5E+02 0.0034 23.9 6.9 57 138-201 75-133 (206)
138 PRK06444 prephenate dehydrogen 36.8 1.8E+02 0.0038 23.8 6.9 26 63-90 3-28 (197)
139 PRK06728 aspartate-semialdehyd 36.3 3.2E+02 0.007 24.6 9.8 93 61-178 6-101 (347)
140 TIGR01325 O_suc_HS_sulf O-succ 36.3 2.6E+02 0.0057 25.3 8.8 38 139-176 139-177 (380)
141 PF00834 Ribul_P_3_epim: Ribul 35.5 68 0.0015 26.3 4.3 53 139-201 80-135 (201)
142 PRK08133 O-succinylhomoserine 35.5 3.4E+02 0.0074 24.7 9.4 38 139-176 146-184 (390)
143 COG0345 ProC Pyrroline-5-carbo 35.3 2.9E+02 0.0064 23.8 12.2 184 66-304 4-204 (266)
144 cd02812 PcrB_like PcrB_like pr 35.1 1.2E+02 0.0026 25.3 5.7 50 138-199 24-75 (219)
145 PF11019 DUF2608: Protein of u 35.0 2.9E+02 0.0062 23.6 8.4 106 59-170 96-204 (252)
146 COG2099 CobK Precorrin-6x redu 34.7 1.4E+02 0.003 25.5 6.0 29 217-252 115-143 (257)
147 PRK04296 thymidine kinase; Pro 34.5 67 0.0014 25.9 4.2 60 139-199 78-137 (190)
148 PRK03692 putative UDP-N-acetyl 34.3 1.9E+02 0.0042 24.5 6.9 56 133-188 55-125 (243)
149 PRK06901 aspartate-semialdehyd 34.3 3.4E+02 0.0073 24.2 9.6 88 62-175 5-95 (322)
150 PRK14573 bifunctional D-alanyl 34.2 92 0.002 31.6 5.9 40 42-90 12-53 (809)
151 PRK12491 pyrroline-5-carboxyla 34.1 3.1E+02 0.0066 23.6 9.7 36 270-305 168-208 (272)
152 TIGR01745 asd_gamma aspartate- 34.0 3.6E+02 0.0079 24.5 9.4 96 62-179 2-100 (366)
153 PRK14039 ADP-dependent glucoki 33.7 30 0.00064 32.2 2.1 21 269-289 427-447 (453)
154 PRK08745 ribulose-phosphate 3- 33.6 1E+02 0.0022 25.7 5.2 52 139-200 85-138 (223)
155 PRK11145 pflA pyruvate formate 33.4 1.6E+02 0.0035 24.7 6.5 59 141-201 72-130 (246)
156 PRK08134 O-acetylhomoserine am 33.0 3.1E+02 0.0068 25.5 8.8 38 139-176 149-187 (433)
157 TIGR02491 NrdG anaerobic ribon 32.8 1E+02 0.0022 23.9 4.8 59 141-199 65-127 (154)
158 COG2085 Predicted dinucleotide 32.1 1E+02 0.0022 25.5 4.7 73 133-210 54-141 (211)
159 PRK08005 epimerase; Validated 31.7 1.2E+02 0.0025 25.1 5.1 52 139-200 81-134 (210)
160 PF04016 DUF364: Domain of unk 31.1 67 0.0014 24.8 3.4 45 133-179 56-100 (147)
161 COG0481 LepA Membrane GTPase L 31.0 1.6E+02 0.0034 27.9 6.1 98 57-173 339-437 (603)
162 COG0075 Serine-pyruvate aminot 31.0 4.2E+02 0.0091 24.3 9.8 97 52-178 72-171 (383)
163 PF00070 Pyr_redox: Pyridine n 30.2 1.7E+02 0.0036 19.4 5.6 41 48-91 13-59 (80)
164 PF09314 DUF1972: Domain of un 30.1 3E+02 0.0064 22.3 8.2 66 139-207 92-166 (185)
165 PRK08114 cystathionine beta-ly 30.0 2.3E+02 0.0049 26.1 7.2 49 40-93 82-133 (395)
166 PF02492 cobW: CobW/HypB/UreG, 29.9 36 0.00077 27.1 1.8 68 138-206 83-154 (178)
167 PLN02242 methionine gamma-lyas 29.6 4.2E+02 0.0091 24.5 9.0 36 140-175 164-200 (418)
168 PRK08091 ribulose-phosphate 3- 29.0 1.5E+02 0.0033 24.8 5.4 52 139-200 91-146 (228)
169 PF01053 Cys_Met_Meta_PP: Cys/ 28.7 1.7E+02 0.0037 26.7 6.2 37 139-175 140-178 (386)
170 KOG3361 Iron binding protein i 28.7 60 0.0013 24.4 2.6 36 271-306 84-120 (157)
171 PLN02383 aspartate semialdehyd 28.5 4.4E+02 0.0095 23.7 10.6 95 60-179 7-103 (344)
172 TIGR02495 NrdG2 anaerobic ribo 28.5 3E+02 0.0065 21.8 9.3 81 140-226 63-149 (191)
173 PRK08883 ribulose-phosphate 3- 28.3 1.4E+02 0.0031 24.8 5.2 52 139-200 81-134 (220)
174 KOG3040 Predicted sugar phosph 27.9 1.4E+02 0.0031 24.7 4.8 43 49-92 28-70 (262)
175 PRK11880 pyrroline-5-carboxyla 27.9 2.5E+02 0.0054 23.8 6.9 35 270-304 166-205 (267)
176 PF14252 DUF4347: Domain of un 27.5 2.2E+02 0.0047 22.5 5.8 63 171-253 3-65 (165)
177 TIGR01326 OAH_OAS_sulfhy OAH/O 27.2 4.4E+02 0.0094 24.3 8.7 38 139-176 142-180 (418)
178 PRK07324 transaminase; Validat 26.9 4.7E+02 0.01 23.5 9.5 37 139-175 153-193 (373)
179 PRK15482 transcriptional regul 26.7 2.8E+02 0.0061 23.9 7.0 95 133-250 128-223 (285)
180 COG3845 ABC-type uncharacteriz 26.5 90 0.002 29.3 3.9 81 155-245 116-199 (501)
181 PRK07050 cystathionine beta-ly 26.2 5.1E+02 0.011 23.7 10.0 38 139-176 150-188 (394)
182 cd02772 MopB_NDH-1_NuoG2 MopB_ 26.2 3.4E+02 0.0075 24.8 7.9 45 135-179 148-193 (414)
183 PF12687 DUF3801: Protein of u 26.1 2E+02 0.0043 23.6 5.5 52 54-107 25-76 (204)
184 cd02752 MopB_Formate-Dh-Na-lik 25.9 1.9E+02 0.0041 28.6 6.2 44 135-179 165-211 (649)
185 PRK12333 nucleoside triphospha 25.5 98 0.0021 25.4 3.5 29 275-303 165-193 (204)
186 PF00919 UPF0004: Uncharacteri 25.0 2.5E+02 0.0054 19.9 5.2 60 137-199 34-97 (98)
187 PF03266 NTPase_1: NTPase; In 24.9 1.6E+02 0.0034 23.3 4.6 101 76-177 17-134 (168)
188 PRK05939 hypothetical protein; 24.5 5.5E+02 0.012 23.5 9.9 38 139-176 131-169 (397)
189 COG0373 HemA Glutamyl-tRNA red 24.4 4.9E+02 0.011 24.1 8.2 118 68-210 183-302 (414)
190 PF13986 DUF4224: Domain of un 24.4 1.3E+02 0.0029 18.0 3.2 32 199-241 2-33 (47)
191 PRK05671 aspartate-semialdehyd 24.3 5.2E+02 0.011 23.1 8.7 93 61-178 5-99 (336)
192 TIGR00444 mazG MazG family pro 24.2 1E+02 0.0022 26.3 3.5 28 276-303 185-212 (248)
193 COG1058 CinA Predicted nucleot 24.1 1.8E+02 0.0038 24.9 5.0 35 48-84 22-56 (255)
194 PF14748 P5CR_dimer: Pyrroline 23.8 1.3E+02 0.0028 21.7 3.7 33 272-304 11-48 (107)
195 COG1660 Predicted P-loop-conta 23.5 2.9E+02 0.0063 23.8 6.0 66 135-204 19-93 (286)
196 PF04131 NanE: Putative N-acet 23.5 3.3E+02 0.0072 22.1 6.1 56 138-200 63-118 (192)
197 PF02515 CoA_transf_3: CoA-tra 23.4 72 0.0016 25.8 2.5 29 171-203 1-29 (191)
198 TIGR01328 met_gam_lyase methio 23.3 5.7E+02 0.012 23.3 9.0 38 139-176 144-182 (391)
199 PF02593 dTMP_synthase: Thymid 22.9 4.5E+02 0.0097 21.9 9.3 135 137-314 49-186 (217)
200 PLN02689 Bifunctional isoaspar 22.6 99 0.0021 27.4 3.3 36 268-303 232-273 (318)
201 PRK11537 putative GTP-binding 22.5 2.3E+02 0.0049 25.1 5.6 67 139-205 90-162 (318)
202 COG1889 NOP1 Fibrillarin-like 22.5 2.4E+02 0.0051 23.4 5.1 43 151-200 107-151 (231)
203 PRK07810 O-succinylhomoserine 22.3 6.1E+02 0.013 23.2 9.4 38 139-176 155-193 (403)
204 cd00368 Molybdopterin-Binding 22.3 1.2E+02 0.0026 27.1 4.0 88 135-226 152-240 (374)
205 PRK06234 methionine gamma-lyas 22.2 6.1E+02 0.013 23.2 8.9 37 139-175 149-188 (400)
206 COG1737 RpiR Transcriptional r 21.9 3.5E+02 0.0077 23.3 6.7 99 122-245 114-213 (281)
207 TIGR00853 pts-lac PTS system, 21.9 2.9E+02 0.0063 19.4 8.2 56 139-203 3-59 (95)
208 KOG0257 Kynurenine aminotransf 21.6 6.5E+02 0.014 23.3 9.5 40 136-175 169-212 (420)
209 COG0143 MetG Methionyl-tRNA sy 21.4 73 0.0016 30.7 2.4 27 60-88 42-68 (558)
210 COG0269 SgbH 3-hexulose-6-phos 21.3 4.8E+02 0.01 21.7 9.3 38 138-178 79-116 (217)
211 COG2100 Predicted Fe-S oxidore 21.1 4.6E+02 0.01 23.5 6.9 84 143-226 163-251 (414)
212 PLN00175 aminotransferase fami 21.0 6.5E+02 0.014 23.0 10.3 37 139-175 187-227 (413)
213 cd02766 MopB_3 The MopB_3 CD i 21.0 1.8E+02 0.0039 27.6 5.0 45 135-179 153-198 (501)
214 PF10727 Rossmann-like: Rossma 20.8 3.7E+02 0.008 20.1 5.7 90 66-178 13-106 (127)
215 PF15632 ATPgrasp_Ter: ATP-gra 20.6 6.2E+02 0.013 22.6 11.5 59 136-199 37-95 (329)
216 PF13460 NAD_binding_10: NADH( 20.5 2.2E+02 0.0048 22.1 4.9 84 72-170 8-91 (183)
217 PRK13601 putative L7Ae-like ri 20.2 3E+02 0.0065 18.8 5.0 34 139-175 24-57 (82)
218 PRK01438 murD UDP-N-acetylmura 20.2 4.8E+02 0.01 24.4 7.7 46 42-91 24-69 (480)
219 PRK08223 hypothetical protein; 20.1 2.6E+02 0.0057 24.4 5.3 39 133-173 111-149 (287)
220 PRK09562 mazG nucleoside triph 20.0 1.3E+02 0.0029 25.8 3.5 29 275-303 193-221 (262)
No 1
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=1.2e-50 Score=362.03 Aligned_cols=320 Identities=50% Similarity=0.858 Sum_probs=266.9
Q ss_pred ccceEEEeCCceeeeEeecCh-----h-------------HHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCC-cE
Q 020625 3 QEGILLGMGNPLLDISSVVDD-----D-------------FLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPG-AT 63 (323)
Q Consensus 3 ~~~~i~viG~~~iD~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~-~v 63 (323)
..++|+|+|+.++|++..+++ . .+|.+++.....+....+||++.|+|.++++|..+|. ++
T Consensus 4 ~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~v 83 (345)
T PTZ00247 4 APKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGFV 83 (345)
T ss_pred CCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCcE
Confidence 456999999999999999984 1 3677788888888899999999999999998433455 99
Q ss_pred EEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEE
Q 020625 64 SYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYF 143 (323)
Q Consensus 64 ~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 143 (323)
.++|.+|+|.+|+.+++.|++.||+++++...+.+|+.+++++++++|+++.+.+++..+++++++.....+.+++++++
T Consensus 84 ~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~~~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~~~~v 163 (345)
T PTZ00247 84 CYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVCGKERSLVANLGAANHLSAEHMQSHAVQEAIKTAQLY 163 (345)
T ss_pred EEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEcCCCcccccCcchhhcCChHHcCcHHHHHHHhhCCEE
Confidence 99999999999999999999999999887666678999998887789988888888888888887652223468899999
Q ss_pred EEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHH
Q 020625 144 YIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIA 223 (323)
Q Consensus 144 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~ 223 (323)
|++++.+..+.+.+..+++.+++++.++++|++.+.+.....+.+..+++++|++++|++|++.+++....+.+++++++
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~~~~~ 243 (345)
T PTZ00247 164 YLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEIA 243 (345)
T ss_pred EEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCccCHHHHH
Confidence 99998666678899999999999999999998766544334455788999999999999999999875433345677887
Q ss_pred HHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhH
Q 020625 224 LKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCY 303 (323)
Q Consensus 224 ~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~ 303 (323)
+.+.++.+....+.+.++||+|++|++++++++.++++++++++.+++|||||||+|.|||+++|++|+++++|+++|++
T Consensus 244 ~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~~~~al~~a~~ 323 (345)
T PTZ00247 244 ARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKDIDRCVEAGHY 323 (345)
T ss_pred HHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 77743211012357899999999999999988888888766544469999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccCCCCCCC
Q 020625 304 TSHVIIQRSGCTYPEKPEF 322 (323)
Q Consensus 304 ~Aa~~~~~~G~~~p~~~~~ 322 (323)
+|+++|++.|+.+|..+++
T Consensus 324 aAa~~v~~~Ga~~~~~~~~ 342 (345)
T PTZ00247 324 SAQVIIQHNGCTYPEKPPF 342 (345)
T ss_pred HHHHHHhccCCCCCCCCCC
Confidence 9999999999998887765
No 2
>PLN02548 adenosine kinase
Probab=100.00 E-value=5.4e-47 Score=337.19 Aligned_cols=297 Identities=85% Similarity=1.313 Sum_probs=247.7
Q ss_pred HhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEE
Q 020625 26 LNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVC 105 (323)
Q Consensus 26 ~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~ 105 (323)
+|.+++.+...+....+||++.|++.+++++.++|.++.++|.+|+|.+|+.+++.|+++||+++++...+.+|+.++++
T Consensus 35 ~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~ 114 (332)
T PLN02548 35 LPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVL 114 (332)
T ss_pred HHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEE
Confidence 57779999999999999999999988777655567999999999999999999999999999999986667789998888
Q ss_pred EeCCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHH
Q 020625 106 VVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFK 185 (323)
Q Consensus 106 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 185 (323)
+++|+|+++.+.++...++.+++...+..+.+...+++|++++.+..+++.+..+++.+++++.++++|++.+.|.....
T Consensus 115 ~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~ 194 (332)
T PLN02548 115 VVGGERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFK 194 (332)
T ss_pred EecCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhH
Confidence 77888888777666656666655432234567899999999987767788889999999999999999998777755556
Q ss_pred HHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeC
Q 020625 186 DALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVL 265 (323)
Q Consensus 186 ~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~ 265 (323)
+.++.+++++|++++|++|++.+++..+.+.++.++.++++.+..+....+.+.+|+|+|++|++++++++.+++|++++
T Consensus 195 ~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~ 274 (332)
T PLN02548 195 DQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPL 274 (332)
T ss_pred HHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccC
Confidence 66889999999999999999999876554445666666655321100123578999999999999998888888887655
Q ss_pred CCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCCCCCC
Q 020625 266 PKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKPEF 322 (323)
Q Consensus 266 ~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~~~~~ 322 (323)
++.+++|||||||+|.|||+++|++|+++++|+++|+++|+++|++.|+.+|.++.|
T Consensus 275 ~~~~vvDttGAGDaF~ag~l~~l~~g~~l~eal~~a~aaAa~~v~~~G~~~~~~~~~ 331 (332)
T PLN02548 275 PKEKLVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVIIQRSGCTYPEKPDF 331 (332)
T ss_pred CcCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCCCCccC
Confidence 566899999999999999999999999999999999999999999999999988876
No 3
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=1.6e-47 Score=337.85 Aligned_cols=293 Identities=47% Similarity=0.733 Sum_probs=248.7
Q ss_pred ceEEEeCCceeeeEeecChhHHhhH------HHHhhcC-----------CceeecCchHHHHHHHHHHhcCCCCcEEEEe
Q 020625 5 GILLGMGNPLLDISSVVDDDFLNKY------DEMASKY-----------NVEYIAGGATQNSIRVAQWMLQIPGATSYIG 67 (323)
Q Consensus 5 ~~i~viG~~~iD~~~~~~~~~~~~~------~~~~~~~-----------~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~ 67 (323)
.+|+|+|++++|++..+++ +|.+ ++..... +....+||.+.|+|.+|++ +| .++.++|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~-LG--~~~~~i~ 76 (312)
T cd01168 2 YDVLGLGNALVDILAQVDD--AFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAA-LG--GSAAFIG 76 (312)
T ss_pred ceEEEECCCeEEEEEecCH--HHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHH-hc--CCeEEEE
Confidence 4799999999999999999 5532 3333332 4678899999999999998 56 9999999
Q ss_pred eeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEe
Q 020625 68 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIA 146 (323)
Q Consensus 68 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 146 (323)
.+|+|.+|+.+++.|+++||+++++...+.+|+.++++++ +|+|+++.+.++...++++++.. +.+++++++|++
T Consensus 77 ~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~l~~~~~v~~~ 152 (312)
T cd01168 77 RVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW----SLLAKAKYLYLE 152 (312)
T ss_pred EeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCH----HHHccCCEEEEE
Confidence 9999999999999999999999998755678999998887 78998888877777788777752 568899999999
Q ss_pred ccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHH
Q 020625 147 GFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKL 226 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l 226 (323)
++.+..+++.+..+++.+++.+.++++|+..+.+.+...+.++.+++++|++++|++|++.+++. +.++..++++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~---~~~~~~~~a~~l 229 (312)
T cd01168 153 GYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEA---ETTDDLEAALKL 229 (312)
T ss_pred EEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCC---CCCChHHHHHHH
Confidence 98665666889999999999999999999765544445566788999999999999999999863 124567778888
Q ss_pred hcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHH
Q 020625 227 SQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSH 306 (323)
Q Consensus 227 ~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa 306 (323)
.+.+++.+|+|+|++|++++++++.+++|+++ +++++|||||||+|+|||+++|++|+++++|+++|+++|+
T Consensus 230 ------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~--~~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~~~Aa 301 (312)
T cd01168 230 ------LALRCRIVVITQGAKGAVVVEGGEVYPVPAIP--VEKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSYAAA 301 (312)
T ss_pred ------HhcCCCEEEEecCCCCeEEEECCEEEeCCCCC--CCCcccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66789999999999999999888888877654 1479999999999999999999999999999999999999
Q ss_pred HHhhhcCccCC
Q 020625 307 VIIQRSGCTYP 317 (323)
Q Consensus 307 ~~~~~~G~~~p 317 (323)
++|++.|+.+|
T Consensus 302 ~~v~~~G~~~~ 312 (312)
T cd01168 302 EVIQQLGPRLP 312 (312)
T ss_pred HHHhccCCCCC
Confidence 99999998754
No 4
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-46 Score=309.18 Aligned_cols=317 Identities=66% Similarity=1.125 Sum_probs=290.7
Q ss_pred eEEEeCCceeeeEeecChhHHhhH------------------HHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEe
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKY------------------DEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 67 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~------------------~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~ 67 (323)
..+.+|++.+|+...++..++.++ ++..+..+....+||++.|++++++++++.+..+.++|
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~G 87 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFG 87 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEe
Confidence 455679999999999998777666 55667778889999999999999998766445999999
Q ss_pred eeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEEEEec
Q 020625 68 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAG 147 (323)
Q Consensus 68 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 147 (323)
.+|.|.+|+++.+.+++.||+..+...++.+|++|.+++++..|++..+.++...++.+++++++++..++++.++|+.|
T Consensus 88 svG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~nRSL~anLgAAn~f~~dhl~~~~~~~lveka~v~yv~G 167 (343)
T KOG2854|consen 88 SVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDNRSLCANLGAANCFKVDHLDKEENWALVEKAKVFYVAG 167 (343)
T ss_pred eccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCCcchhhccchhhccCHHHhcchhhhhhhhheeEEEEEE
Confidence 99999999999999999999999998889999999999986669999999999999999999988899999999999999
Q ss_pred cccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHh
Q 020625 148 FFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLS 227 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~ 227 (323)
+++.+.|+.++.+.+++.+.+.++.+|++.+...+...+.+...++++|++|.|++|+++++...++...+..+.+..+.
T Consensus 168 ffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia~~~~ 247 (343)
T KOG2854|consen 168 FFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIALKLS 247 (343)
T ss_pred EEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888877
Q ss_pred cCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHH
Q 020625 228 QWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHV 307 (323)
Q Consensus 228 ~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~ 307 (323)
.+.+......++++||.|..++++..+++.+.++..+.+..+++||+||||+|.+||+++|.+|.++++|++.++.+|+.
T Consensus 248 ~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l~~cir~g~~aa~~ 327 (343)
T KOG2854|consen 248 ALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSLEECIRAGSYAASH 327 (343)
T ss_pred ccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhh
Confidence 76664556788999999999999998888888887777788999999999999999999999999999999999999999
Q ss_pred HhhhcCccCCCCCCC
Q 020625 308 IIQRSGCTYPEKPEF 322 (323)
Q Consensus 308 ~~~~~G~~~p~~~~~ 322 (323)
+++..|+++|+.++|
T Consensus 328 vi~~~G~~~p~~~~~ 342 (343)
T KOG2854|consen 328 VIRRVGCTVPEKPDF 342 (343)
T ss_pred eeeccCCCCCCCCCC
Confidence 999999999998887
No 5
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=5.7e-47 Score=333.73 Aligned_cols=292 Identities=23% Similarity=0.344 Sum_probs=245.4
Q ss_pred ceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHH
Q 020625 5 GILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKL 84 (323)
Q Consensus 5 ~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~ 84 (323)
++|+|+|++++|++..+++ +|.++..+...+....+||.+.|+|.+|++ +| .++.++|.+|+|.+|+.+++.|++
T Consensus 3 ~~i~~iG~~~~D~~~~~~~--~p~~~~~~~~~~~~~~~GG~~~Nva~~la~-lG--~~~~~~~~vG~D~~g~~i~~~L~~ 77 (306)
T PRK11142 3 GKLVVLGSINADHVLNLES--FPRPGETLTGRHYQVAFGGKGANQAVAAAR-LG--ADIAFIACVGDDSIGESMRQQLAK 77 (306)
T ss_pred CcEEEECCceeeEEEEeCC--CCCCCCeeEeccceecCCCcHHHHHHHHHh-cC--CcEEEEEEECCChhHHHHHHHHHH
Confidence 3799999999999999998 777788888888899999999999999998 56 999999999999999999999999
Q ss_pred cCceeEEee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHH
Q 020625 85 AGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAE 162 (323)
Q Consensus 85 ~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~ 162 (323)
+||+++++. .++.+|+.+++..+ +|+|++..+.++...+++++++. ..+.+..++++|+++ ..+.+.+..+++
T Consensus 78 ~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~v~~~~---~~~~~~~~~~~~ 152 (306)
T PRK11142 78 DGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEA--HRELIANADALLMQL---ETPLETVLAAAK 152 (306)
T ss_pred cCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHH--HHhhhccCCEEEEeC---CCCHHHHHHHHH
Confidence 999999985 56778999988876 68888877777666666665542 235578999999975 235578889999
Q ss_pred HHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEE
Q 020625 163 HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVI 242 (323)
Q Consensus 163 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvi 242 (323)
.+++++.++++|+.... +....+++++|++++|++|++.+++....+.++..++++.+ ...+++.+++
T Consensus 153 ~a~~~g~~v~~d~~~~~------~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vvv 220 (306)
T PRK11142 153 IAKQHGTKVILNPAPAR------ELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVL------HQKGIETVLI 220 (306)
T ss_pred HHHHcCCEEEEECCCCc------ccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHH------HHhCCCeEEE
Confidence 99999999999986421 11346788999999999999999875443334566777777 5668999999
Q ss_pred eeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCcc--CCCCC
Q 020625 243 TQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCT--YPEKP 320 (323)
Q Consensus 243 t~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~--~p~~~ 320 (323)
|+|++|++++++++.+++++++ ++++||+||||+|.|||+++|++|+++++|+++|+++|+++|++.|+. .|+.+
T Consensus 221 t~G~~G~~~~~~~~~~~~~~~~---v~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~ 297 (306)
T PRK11142 221 TLGSRGVWLSENGEGQRVPGFR---VQAVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAAAAIAVTRKGAQPSIPWRE 297 (306)
T ss_pred EECCCcEEEEeCCcceeccCCC---cccccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCcccccCCCHH
Confidence 9999999998888777777654 479999999999999999999999999999999999999999999985 46554
Q ss_pred C
Q 020625 321 E 321 (323)
Q Consensus 321 ~ 321 (323)
+
T Consensus 298 ~ 298 (306)
T PRK11142 298 E 298 (306)
T ss_pred H
Confidence 4
No 6
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=8.9e-45 Score=329.37 Aligned_cols=296 Identities=21% Similarity=0.303 Sum_probs=242.6
Q ss_pred cceEEEeCCceeeeEeecChhH-----HhhHH-------------HHhhcCCceeecCchHHHHHHHHHHhcCC------
Q 020625 4 EGILLGMGNPLLDISSVVDDDF-----LNKYD-------------EMASKYNVEYIAGGATQNSIRVAQWMLQI------ 59 (323)
Q Consensus 4 ~~~i~viG~~~iD~~~~~~~~~-----~~~~~-------------~~~~~~~~~~~~GG~~~n~a~~l~~l~g~------ 59 (323)
+.+|+++|++++|++..+++.+ +|+.+ +..........+||++.|+|.+|++ +|.
T Consensus 69 ~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~Avalar-LG~~~~~~~ 147 (426)
T PLN02813 69 RWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALAR-LGSQSAAGP 147 (426)
T ss_pred cceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHH-hccccccCC
Confidence 5689999999999999998843 44444 4445666789999999999999998 441
Q ss_pred CCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhc
Q 020625 60 PGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVE 138 (323)
Q Consensus 60 g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (323)
..+|.++|.+|+|.+|+++++.|++.||++.++...+.+|+.++++++ +|+|+++.+.+++..++++++. .+.++
T Consensus 148 ~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~----~~~i~ 223 (426)
T PLN02813 148 ALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCL----ASAIS 223 (426)
T ss_pred CCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCchhhCCccccC----HHHHh
Confidence 158999999999999999999999999999988766678999988886 7999998888877666655442 35688
Q ss_pred cccEEEEeccccccCH--HHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHH-HHhhcCCCcEEEeCHHHHHHHHhhcCCC
Q 020625 139 KAKYFYIAGFFLTVSP--DSIQLVAEHAAANNKVFMMNLSAPFICEFFKDA-LEKVLPYMDYIFGNETEARTFSKVQGWE 215 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~l~~~dvl~~n~~e~~~l~~~~~~~ 215 (323)
+++++|++++.+..+. +.+.++++.+++.|.++++|+++......+++. .+.+++++|++++|++|+..+++...
T Consensus 224 ~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~~-- 301 (426)
T PLN02813 224 KSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCGLGS-- 301 (426)
T ss_pred cCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCCC--
Confidence 9999999987654443 678889999999999999998865332222333 34566899999999999999987421
Q ss_pred CCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC-CH
Q 020625 216 TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK-PI 294 (323)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~-~~ 294 (323)
.++.+++++.+ . .+.+.+|||+|++|++++++++.+++|++++ +++|||||||+|.|||+|+|++|+ ++
T Consensus 302 ~~~~~~a~~~L------~-~~~~~VVVT~G~~Ga~~~~~~~~~~~pa~~v---~vVDTtGAGDAF~Agfl~~l~~G~~~l 371 (426)
T PLN02813 302 EESPESATRYL------S-HFCPLVSVTDGARGSYIGVKGEAVYIPPSPC---VPVDTCGAGDAYAAGILYGLLRGVSDL 371 (426)
T ss_pred CCCHHHHHHHH------H-cCCCEEEEEeCCCCeEEEECCEEEEeCCCCC---CcccCCChHHHHHHHHHHHHHcCCCCH
Confidence 24577777766 3 3578999999999999998888888887644 799999999999999999999999 99
Q ss_pred HHHHHHHhHHHHHHhhhcCccC
Q 020625 295 EECVRAGCYTSHVIIQRSGCTY 316 (323)
Q Consensus 295 ~~a~~~A~~~Aa~~~~~~G~~~ 316 (323)
++|+++|+++|+++|++.|+..
T Consensus 372 ~~al~~A~a~Aa~~v~~~Ga~~ 393 (426)
T PLN02813 372 RGMGELAARVAATVVGQQGTRL 393 (426)
T ss_pred HHHHHHHHHHHHHHHcccCCCc
Confidence 9999999999999999999953
No 7
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=5e-46 Score=330.27 Aligned_cols=299 Identities=22% Similarity=0.301 Sum_probs=245.4
Q ss_pred ccceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHH
Q 020625 3 QEGILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNS 82 (323)
Q Consensus 3 ~~~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l 82 (323)
.+++|+|+|++++|++..+++ +|.++...........+||.+.|+|.+|++ +| .++.++|.+|+|.+|+.+++.|
T Consensus 14 ~~~~vlviG~~~vD~~~~~~~--~~~~~~~~~~~~~~~~~GG~~~NvA~~la~-lG--~~~~~is~vG~D~~g~~i~~~l 88 (326)
T PTZ00292 14 AEPDVVVVGSSNTDLIGYVDR--MPQVGETLHGTSFHKGFGGKGANQAVMASK-LG--AKVAMVGMVGTDGFGSDTIKNF 88 (326)
T ss_pred CCCCEEEEccceeeEEEecCC--CCCCCCceeecCceeCCCCcHHHHHHHHHH-cC--CCeEEEEEECCChhHHHHHHHH
Confidence 356899999999999999998 777778888888889999999999999998 56 9999999999999999999999
Q ss_pred HHcCceeEEe-ecCCCCceeEEEEEe--CCccceeecccccccCCcccCCCcchhhhhcc-ccEEEEeccccccCHHHHH
Q 020625 83 KLAGVNVHYY-EDESASTGTCAVCVV--GGERSLVANLSAANCYKSEHLKKPENWALVEK-AKYFYIAGFFLTVSPDSIQ 158 (323)
Q Consensus 83 ~~~gi~~~~~-~~~~~~t~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~i~~~~~~~~~~~~~ 158 (323)
+++||+++++ ..++.+|+.++++++ +|+|+++.+.+++..+++++++. ....+.. ++++++++ ..+.+...
T Consensus 89 ~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~i~~~~~~~~~~~---~~~~~~~~ 163 (326)
T PTZ00292 89 KRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDA--QTDNIQNICKYLICQN---EIPLETTL 163 (326)
T ss_pred HHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHH--HHHHhhhhCCEEEECC---CCCHHHHH
Confidence 9999999998 466778999988876 57888877777666666665542 2344666 89999874 34567788
Q ss_pred HHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCcc
Q 020625 159 LVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKR 238 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (323)
++++.+++.+.++++|+++.... ...+.++.+++++|++++|++|++.+++....+.++..++++.+ ...+.+
T Consensus 164 ~~~~~a~~~g~~v~~D~~~~~~~-~~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l------~~~g~~ 236 (326)
T PTZ00292 164 DALKEAKERGCYTVFNPAPAPKL-AEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKEL------QQLGVE 236 (326)
T ss_pred HHHHHHHHcCCEEEEECCCCccc-cccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHH------HHcCCC
Confidence 89999999999999999643210 01245778899999999999999999875433334455666667 556889
Q ss_pred EEEEeeCCCceEEeeCCe-eeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCcc--
Q 020625 239 TAVITQGADPVVVAQDGK-LKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCT-- 315 (323)
Q Consensus 239 ~vvit~G~~G~~~~~~~~-~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~-- 315 (323)
.+++|+|++|+++++++. .+++|+++ .+++||+||||+|.|||+++|++|+++++|+++|+++|++++++.|+.
T Consensus 237 ~vvvT~G~~Ga~~~~~~~~~~~~~~~~---~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~a~Aa~~v~~~G~~~~ 313 (326)
T PTZ00292 237 NVIITLGANGCLIVEKENEPVHVPGKR---VKAVDTTGAGDCFVGSMAYFMSRGKDLKESCKRANRIAAISVTRHGTQSS 313 (326)
T ss_pred eEEEEeCCCcEEEEeCCCceEEccCCc---cccCCCcchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCcccc
Confidence 999999999999987664 47777544 479999999999999999999999999999999999999999999996
Q ss_pred CCCCCC
Q 020625 316 YPEKPE 321 (323)
Q Consensus 316 ~p~~~~ 321 (323)
+|+.++
T Consensus 314 ~~~~~~ 319 (326)
T PTZ00292 314 YPHPSE 319 (326)
T ss_pred CCCHHH
Confidence 465544
No 8
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=2.1e-45 Score=321.75 Aligned_cols=286 Identities=24% Similarity=0.356 Sum_probs=242.8
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+|+|++++|++..+++ +|.++..........++||.+.|+|..|++ +| .++.++|.+|+|.+|+.+++.|+++
T Consensus 1 ~il~iG~~~~D~~~~~~~--~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~-lG--~~~~~~~~vG~D~~g~~i~~~l~~~ 75 (292)
T cd01174 1 KVVVVGSINVDLVTRVDR--LPKPGETVLGSSFETGPGGKGANQAVAAAR-LG--ARVAMIGAVGDDAFGDELLENLREE 75 (292)
T ss_pred CEEEEeeceeEEEEEecC--CCCCCCcEEeccceecCCCcHHHHHHHHHH-cC--CceEEEEEEcCCccHHHHHHHHHHc
Confidence 589999999999999888 677777788888889999999999999998 56 9999999999999999999999999
Q ss_pred CceeEEe-ecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHH
Q 020625 86 GVNVHYY-EDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEH 163 (323)
Q Consensus 86 gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~ 163 (323)
||+++++ ..++.+|+.+.+..+ +|+|+++.+.++...+++++++. ..+.++.++++++++ ..+.+.+..+++.
T Consensus 76 gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~---~~~~~~~~~~~~~ 150 (292)
T cd01174 76 GIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDA--ALELIAAADVLLLQL---EIPLETVLAALRA 150 (292)
T ss_pred CCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHH--HHHhcccCCEEEEeC---CCCHHHHHHHHHH
Confidence 9999998 466778999988886 68888877766655555554432 345678999999985 3456788899999
Q ss_pred HHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEe
Q 020625 164 AAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVIT 243 (323)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit 243 (323)
+++++.++++|+.... +..+.+++++|++++|++|++.+++....+.++.+++++.+ ...+++.+++|
T Consensus 151 a~~~g~~v~~D~~~~~------~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l------~~~g~~~vvvt 218 (292)
T cd01174 151 ARRAGVTVILNPAPAR------PLPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLL------LAKGVKNVIVT 218 (292)
T ss_pred HHhcCCEEEEeCCCcC------cCcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEEEEE
Confidence 9999999999997532 12357889999999999999999876554444566777887 66789999999
Q ss_pred eCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccC
Q 020625 244 QGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTY 316 (323)
Q Consensus 244 ~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~ 316 (323)
+|++|++++++++.+++++++ .+++|++||||+|.|||+++|++|+++++|+++|+++|+.++++.|+..
T Consensus 219 ~G~~G~~~~~~~~~~~~~~~~---~~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~ 288 (292)
T cd01174 219 LGAKGALLASGGEVEHVPAFK---VKAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAAALSVTRPGAQP 288 (292)
T ss_pred eCCCceEEEeCCceEEecCCC---cccCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999888877777654 4789999999999999999999999999999999999999999999953
No 9
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.1e-43 Score=326.79 Aligned_cols=298 Identities=18% Similarity=0.201 Sum_probs=234.8
Q ss_pred cceEEEeCCceeeeEeecChhHHhhHHHHhh-----------cCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecC
Q 020625 4 EGILLGMGNPLLDISSVVDDDFLNKYDEMAS-----------KYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKD 72 (323)
Q Consensus 4 ~~~i~viG~~~iD~~~~~~~~~~~~~~~~~~-----------~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D 72 (323)
+++|+++|++++|++..+++ +|.++.... .......+|| ++|+|.+|++ +| .++.++|.+|+|
T Consensus 72 ~~~vl~lG~~~vD~i~~V~~--lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLar-LG--~~v~lig~VG~D 145 (470)
T PLN02341 72 EIDVATLGNLCVDIVLPVPE--LPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAAR-LG--LRCSTIGHVGDE 145 (470)
T ss_pred cccEEEECCcceeEEEecCC--CCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHH-cC--CCeEEEEEecCc
Confidence 45899999999999999999 666654321 1334556788 6899999998 56 999999999999
Q ss_pred chhHHHHHHHHHcCceeEEeec-C--------CCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhccc
Q 020625 73 KFGEEMKKNSKLAGVNVHYYED-E--------SASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEKA 140 (323)
Q Consensus 73 ~~g~~i~~~l~~~gi~~~~~~~-~--------~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 140 (323)
.+|+.+++.|+++||+++++.. . ..+|+.++++++ +|++.++...+.......+++.. ++..+.++++
T Consensus 146 ~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~a 225 (470)
T PLN02341 146 IYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQS 225 (470)
T ss_pred HHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcC
Confidence 9999999999999999999853 3 246888888886 67766543322222222122211 2234568899
Q ss_pred cEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCch---hHH--HHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCC
Q 020625 141 KYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAP---FIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 214 (323)
Q Consensus 141 ~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~--~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~ 214 (323)
|++|++++.+ .++++.+.++++.+++.|.++++|+... .|. +...+.++.+++++|++++|++|++.+++.
T Consensus 226 div~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~--- 302 (470)
T PLN02341 226 KALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGI--- 302 (470)
T ss_pred CEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCC---
Confidence 9999999864 4667889999999999999999999643 111 112345788999999999999999999863
Q ss_pred CCCCHHHHHHHHhcCCccccCC--ccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC
Q 020625 215 ETDDVEEIALKLSQWPKASEIR--KRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK 292 (323)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~--~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~ 292 (323)
++.+++++.+ ...+ .+.+|||+|++|++++++++.+++|+++ ++++|||||||+|.|||+++|++|+
T Consensus 303 --~~~~~a~~~l------~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~---v~vVDTtGAGDaF~Agfl~gll~G~ 371 (470)
T PLN02341 303 --RNPILAGQEL------LRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFK---VNVVDTVGCGDSFAAAIALGYIHNL 371 (470)
T ss_pred --CCHHHHHHHH------HhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCC---cCCCCCcCccHHHHHHHHHHHHcCC
Confidence 5677888887 4344 5899999999999999988888887654 4799999999999999999999999
Q ss_pred CHHHHHHHHhHHHHHHhhhcCc--cCCCCCC
Q 020625 293 PIEECVRAGCYTSHVIIQRSGC--TYPEKPE 321 (323)
Q Consensus 293 ~~~~a~~~A~~~Aa~~~~~~G~--~~p~~~~ 321 (323)
++++|+++|+++|++++++.|+ .+|+.++
T Consensus 372 ~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~e 402 (470)
T PLN02341 372 PLVNTLTLANAVGAATAMGCGAGRNVATLEK 402 (470)
T ss_pred CHHHHHHHHHHHHHHHHcCcCCCCCCCCHHH
Confidence 9999999999999999999997 4676654
No 10
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=7.1e-43 Score=312.24 Aligned_cols=296 Identities=24% Similarity=0.358 Sum_probs=240.9
Q ss_pred ccceEEEeC-CceeeeEeecChhHHhhHH---------------HH-hh-----------cCCceeecCchHHHHHHHHH
Q 020625 3 QEGILLGMG-NPLLDISSVVDDDFLNKYD---------------EM-AS-----------KYNVEYIAGGATQNSIRVAQ 54 (323)
Q Consensus 3 ~~~~i~viG-~~~iD~~~~~~~~~~~~~~---------------~~-~~-----------~~~~~~~~GG~~~n~a~~l~ 54 (323)
++++|+.|| +..+|+...++..++.+.+ .. .. ......++||++.|++.+++
T Consensus 18 ~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la 97 (367)
T PLN02379 18 RPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLS 97 (367)
T ss_pred CCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHH
Confidence 357899999 9999999999876655530 00 11 11356779999999999988
Q ss_pred HhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcch
Q 020625 55 WMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPEN 133 (323)
Q Consensus 55 ~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 133 (323)
+.+| .++.++|.+|+|..|+++++.|++.||+++.+...+.+|+.++++++ +|+|++..+.+....++++++..
T Consensus 98 ~~LG--~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~--- 172 (367)
T PLN02379 98 AGFG--VSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTK--- 172 (367)
T ss_pred HhcC--CCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCChhHCCH---
Confidence 4345 99999999999999999999999999999887655568999998886 78998877666666666666653
Q ss_pred hhhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEEeCHHHHHHHHhh
Q 020625 134 WALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEARTFSKV 211 (323)
Q Consensus 134 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~e~~~l~~~ 211 (323)
+.+++++++|++ +. ..+++.+.++++.++++|+++.+|++.+...+.+++.+..+++ ++|++++|++|++.+++.
T Consensus 173 -~~~~~~~~v~v~-~~-~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~ 249 (367)
T PLN02379 173 -EDFKGSKWLVLR-YG-FYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRG 249 (367)
T ss_pred -HHHhcCCEEEEE-cc-cCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcC
Confidence 567899999999 42 2467889999999999999999999887655556666777774 899999999999999863
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcC
Q 020625 212 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQE 291 (323)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g 291 (323)
.+ .++.+++.+.+ ..+++.++||+|++|++++++++.+++++++ ..+++|||||||+|.|||+|+|.+|
T Consensus 250 ~~--~~~~~~~~~~l-------~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~--~~~vVDTtGAGDaFaagfl~gl~~G 318 (367)
T PLN02379 250 EQ--ESDPEAALEFL-------AKYCNWAVVTLGSKGCIARHGKEVVRVPAIG--ETNAVDATGAGDLFASGFLYGLIKG 318 (367)
T ss_pred CC--CCCHHHHHHHH-------HhcCCEEEEEECCCCeEEEECCEEEEecCCC--CCCcccCCChhHHHHHHHHHHHHCC
Confidence 22 23566666555 3357899999999999999988888887643 2478999999999999999999999
Q ss_pred CCHHHHHHHHhHHHHHHhhhcCccCC
Q 020625 292 KPIEECVRAGCYTSHVIIQRSGCTYP 317 (323)
Q Consensus 292 ~~~~~a~~~A~~~Aa~~~~~~G~~~p 317 (323)
+++++|+++|+++|+.+|++.|++++
T Consensus 319 ~~l~~a~~~g~~aAa~vi~~~G~~~~ 344 (367)
T PLN02379 319 LSLEECCKVGACSGGSVVRALGGEVT 344 (367)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999744
No 11
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.5e-42 Score=312.71 Aligned_cols=296 Identities=18% Similarity=0.284 Sum_probs=235.9
Q ss_pred cceEEEeCCceeeeEeecChhHHhhHH-------------------HHhhcCC-ceeecCchHHHHHHHHHHhcCCCCcE
Q 020625 4 EGILLGMGNPLLDISSVVDDDFLNKYD-------------------EMASKYN-VEYIAGGATQNSIRVAQWMLQIPGAT 63 (323)
Q Consensus 4 ~~~i~viG~~~iD~~~~~~~~~~~~~~-------------------~~~~~~~-~~~~~GG~~~n~a~~l~~l~g~g~~v 63 (323)
..+|+++|+..+|+...++..++.+.+ ....... ....+||++.|+|+++++ +| |.++
T Consensus 33 ~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lAr-LG-G~~~ 110 (434)
T PRK15074 33 RTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSV-LA-DDRS 110 (434)
T ss_pred CCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHH-cC-CCCe
Confidence 358999999999999999886665541 1111111 345699999999999998 42 4899
Q ss_pred EEEeeeecC-chhHHHHHHHH--HcCceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhcc
Q 020625 64 SYIGCIGKD-KFGEEMKKNSK--LAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEK 139 (323)
Q Consensus 64 ~~~~~vG~D-~~g~~i~~~l~--~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (323)
.++|.||+| .+|+++++.|+ +.||+++++...+.+|+.++++++ +|+|+++.+.++...++++++.. +.+++
T Consensus 111 ~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~----~~i~~ 186 (434)
T PRK15074 111 VLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPE----DVIAG 186 (434)
T ss_pred EEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCH----hHhcc
Confidence 999999999 69999999997 689999998654457999999986 89999999999888898888863 56899
Q ss_pred ccEEEEeccccc-----cCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHH-HhhcCCCcEEEeCHHHHHHHHhhcC
Q 020625 140 AKYFYIAGFFLT-----VSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDAL-EKVLPYMDYIFGNETEARTFSKVQG 213 (323)
Q Consensus 140 ~~~v~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~l~~~dvl~~n~~e~~~l~~~~~ 213 (323)
++++|++++.+. ..++...++++.+++.|+++++|++.........+.+ ..+++++|++++|++|+..+++
T Consensus 187 a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~LtG--- 263 (434)
T PRK15074 187 ASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEALTG--- 263 (434)
T ss_pred CCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHHHhC---
Confidence 999999998753 2357788999999999999999998764322222223 3456799999999999999986
Q ss_pred CCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCe-------ee----------------------------
Q 020625 214 WETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGK-------LK---------------------------- 258 (323)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~-------~~---------------------------- 258 (323)
.++++++++.+ .. .++.++||+|++|++++..++ .+
T Consensus 264 --~~d~eea~~~L------~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK15074 264 --ESDPLLASDKA------LD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPL 334 (434)
T ss_pred --CCCHHHHHHHH------Hc-CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhcccccccc
Confidence 35777888877 33 368999999999999964222 11
Q ss_pred ----EEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC--------------------CHHHHHHHHhHHHHHHhhhcCc
Q 020625 259 ----KFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK--------------------PIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 259 ----~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~--------------------~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
+++++...+++++|||||||+|.|||+|+|.+|+ ++++|+++|+++|+.++++.|+
T Consensus 335 ~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~ 414 (434)
T PRK15074 335 RVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSP 414 (434)
T ss_pred ccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcCC
Confidence 5554422245799999999999999999999998 8999999999999999999999
Q ss_pred cCC
Q 020625 315 TYP 317 (323)
Q Consensus 315 ~~p 317 (323)
++|
T Consensus 415 ~~~ 417 (434)
T PRK15074 415 RLS 417 (434)
T ss_pred CCC
Confidence 544
No 12
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=1.7e-43 Score=308.45 Aligned_cols=277 Identities=23% Similarity=0.322 Sum_probs=228.3
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+|+|++++|++..+++ +|..++.++..+...++||.+.|+|..|++ +| .++.++|.+|+|..|+.+++.|++.
T Consensus 1 ~i~~iG~~~iD~~~~~~~--~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~-lG--~~~~~~~~vG~D~~g~~i~~~l~~~ 75 (284)
T cd01945 1 RVLGVGLAVLDLIYLVAS--FPGGDGKIVATDYAVIGGGNAANAAVAVAR-LG--GQARLIGVVGDDAIGRLILAELAAE 75 (284)
T ss_pred CEEEECcceeEEEEEecc--CCCCCCeEEEeEEEEecCCHHHHHHHHHHH-cC--CCeEEEEEecCchHHHHHHHHHHHc
Confidence 589999999999999988 777777778888899999999999999998 56 9999999999999999999999999
Q ss_pred CceeEEeec-CCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHH
Q 020625 86 GVNVHYYED-ESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHA 164 (323)
Q Consensus 86 gi~~~~~~~-~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~ 164 (323)
||+++++.. ++.+|+++++...+++++...+.+....+..+++.. ..+++++++|++++. ++....+++.+
T Consensus 76 gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~i~~~~----~~~~~~~~~~~ 147 (284)
T cd01945 76 GVDTSFIVVAPGARSPISSITDITGDRATISITAIDTQAAPDSLPD----AILGGADAVLVDGRQ----PEAALHLAQEA 147 (284)
T ss_pred CCCccceeecCCCCCccEEEEccCCCceEEEecCCCCCCCcccCCH----HHhCcCCEEEEcCCC----HHHHHHHHHHH
Confidence 999999864 556788877644467777666655555566666543 347999999998753 46778899999
Q ss_pred HhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEee
Q 020625 165 AANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQ 244 (323)
Q Consensus 165 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~ 244 (323)
++.+.++.+|+....+ .+ ++.+++++|++++|++|++.+++. .+. ++++.+ ...+.+.++||+
T Consensus 148 ~~~g~~v~~~~~~~~~----~~-~~~~~~~~dil~~n~~e~~~l~~~-----~~~-~~~~~l------~~~~~~~vivt~ 210 (284)
T cd01945 148 RARGIPIPLDLDGGGL----RV-LEELLPLADHAICSENFLRPNTGS-----ADD-EALELL------ASLGIPFVAVTL 210 (284)
T ss_pred HHcCCCeeEeccCCcc----cc-hHHHhccCCEEEeChhHHhhhcCC-----CHH-HHHHHH------HhcCCcEEEEEE
Confidence 9998855444433221 22 677889999999999999988752 222 666666 567899999999
Q ss_pred CCCceEEee-CCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCcc
Q 020625 245 GADPVVVAQ-DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCT 315 (323)
Q Consensus 245 G~~G~~~~~-~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~ 315 (323)
|++|+++++ +++.+++++++ ++++||+||||+|.|||+++|++|+++++|+++|+++|++++++.|+.
T Consensus 211 G~~G~~~~~~~~~~~~~~~~~---~~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~ 279 (284)
T cd01945 211 GEAGCLWLERDGELFHVPAFP---VEVVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAAALKCRGLGGR 279 (284)
T ss_pred CCCCeEEEcCCCCEEecCCCc---cccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCc
Confidence 999999998 66777777653 479999999999999999999999999999999999999999999985
No 13
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.5e-43 Score=307.07 Aligned_cols=284 Identities=21% Similarity=0.297 Sum_probs=228.1
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+|+|++++|++..+++ +|.++...+.......+|| +.|+|.+|++ +| .++.++|.+|+|.+|+.+++.|++.
T Consensus 1 ~i~~iG~~~~D~i~~~~~--~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~-lG--~~~~~~~~vG~D~~g~~i~~~l~~~ 74 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDK--LPASGGDIEAKSKSYVIGG-GFNVMVAASR-LG--IPTVNAGPLGNGNWADQIRQAMRDE 74 (289)
T ss_pred CeEEEcceeEEEEeeccc--CCCCCCccccceeeeccCc-HHHHHHHHHH-cC--CCeEEEEEecCChHHHHHHHHHHHc
Confidence 589999999999999988 7777888888888999999 9999999998 56 9999999999999999999999999
Q ss_pred CceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccC---HHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVS---PDSIQLVA 161 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~---~~~~~~~~ 161 (323)
||+++++...+..|+.++++++ +|+|+++.+.+++..+++++++. ..+.+.+++|++++.+... .+.+..++
T Consensus 75 gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (289)
T cd01944 75 GIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFAT----LTVAPYDYVYLSGYTLASENASKVILLEWL 150 (289)
T ss_pred CCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhcc----ccCCCCCEEEEeCccccCcchhHHHHHHHH
Confidence 9999998666667887767766 78998877777666666666653 1367899999998764222 34555666
Q ss_pred HHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEE
Q 020625 162 EHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAV 241 (323)
Q Consensus 162 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 241 (323)
+.++ .+.++++|+....+. ...+.++.+++++|++++|++|++.+++... .+....++.+ ...+.+.++
T Consensus 151 ~~~~-~~~~v~~D~~~~~~~-~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~---~~~~~~~~~~------~~~~~~~vv 219 (289)
T cd01944 151 EALP-AGTTLVFDPGPRISD-IPDTILQALMAKRPIWSCNREEAAIFAERGD---PAAEASALRI------YAKTAAPVV 219 (289)
T ss_pred Hhcc-CCCEEEEcCcccccc-cCHHHHHHHHhcCCEEccCHHHHHHHhCCCC---cchHHHHHHH------HhccCCeEE
Confidence 5543 467888888643211 1234578889999999999999999987421 2223335556 556778999
Q ss_pred EeeCCCceEEee-CCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcC
Q 020625 242 ITQGADPVVVAQ-DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313 (323)
Q Consensus 242 it~G~~G~~~~~-~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G 313 (323)
+|+|++|+++++ ++..+++|+++ ++++|||||||+|.|||++++++|+++++|+++|+++|++++++.|
T Consensus 220 vt~G~~Ga~~~~~~~~~~~~~~~~---~~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~a~aa~~~~~~G 289 (289)
T cd01944 220 VRLGSNGAWIRLPDGNTHIIPGFK---VKAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLANAAAAIVVTRSG 289 (289)
T ss_pred EEECCCcEEEEecCCCeEEecCCC---CCCccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCC
Confidence 999999999988 44566666543 4789999999999999999999999999999999999999999987
No 14
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=4.8e-43 Score=309.24 Aligned_cols=289 Identities=18% Similarity=0.241 Sum_probs=226.2
Q ss_pred CCccceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHH
Q 020625 1 MAQEGILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKK 80 (323)
Q Consensus 1 m~~~~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~ 80 (323)
|..+++|+|+|++++|++..++. .+. +...........+||++.|+|.++++ +| .++.++|.+|+|..|+.+++
T Consensus 1 ~~~~~~i~~iG~~~vD~~~~~~~--~~~-~~~~~~~~~~~~~GG~~~NvA~~l~~-lG--~~~~~ig~vG~D~~g~~i~~ 74 (313)
T PRK09850 1 MREKDYVVIIGSANIDVAGYSHE--SLN-YADSNPGKIKFTPGGVGRNIAQNLAL-LG--NKAWLLSAVGSDFYGQSLLT 74 (313)
T ss_pred CCCCCcEEEECcEEEeeeccCCC--cCc-CCCCCceEEEEeCCcHHHHHHHHHHH-cC--CCeEEEEEecCchhHHHHHH
Confidence 66777999999999999988654 222 23334455778899999999999998 56 99999999999999999999
Q ss_pred HHHHcCceeEEe-ecCCCCceeEEEEEe-CCccceeec-ccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHH
Q 020625 81 NSKLAGVNVHYY-EDESASTGTCAVCVV-GGERSLVAN-LSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSI 157 (323)
Q Consensus 81 ~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~ 157 (323)
.|++.||+++++ ..++.+|+.++++++ +|+|.+... .++...+..+.+.. ..+.+++++++++++ ..+.+.+
T Consensus 75 ~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~---~~~~~~~ 149 (313)
T PRK09850 75 QTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQ--HREFIQRAKVIVADC---NISEEAL 149 (313)
T ss_pred HHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHH--HHHHHhcCCEEEEeC---CCCHHHH
Confidence 999999999997 456778999999886 677766443 23333343333321 234578899999976 3455666
Q ss_pred HHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCc
Q 020625 158 QLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRK 237 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (323)
..+++.+ .++++++|+.+. | ..+.++.+++.+|++++|++|++.+++....+.++++++++.+ ...+.
T Consensus 150 ~~~~~~~--~g~~v~~D~~~~-~---~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l------~~~g~ 217 (313)
T PRK09850 150 AWILDNA--ANVPVFVDPVSA-W---KCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWF------HQHGL 217 (313)
T ss_pred HHHHHhc--cCCCEEEEcCCH-H---HHHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCC
Confidence 6676643 478899998753 2 1234667889999999999999999875433344577777887 56788
Q ss_pred cEEEEeeCCCceEEeeCC-eeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCcc
Q 020625 238 RTAVITQGADPVVVAQDG-KLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCT 315 (323)
Q Consensus 238 ~~vvit~G~~G~~~~~~~-~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~ 315 (323)
+.+|||+|++|+++++++ +..++|++ +++++|||||||+|.|||+++|.+|+++++|+++|+++|+++++..+..
T Consensus 218 ~~vvvT~G~~G~~~~~~~~~~~~~~~~---~~~vvDttGAGDaF~agfi~~l~~g~~~~eal~~a~a~aa~~~~~~~~~ 293 (313)
T PRK09850 218 NRLVLSMGGDGVYYSDISGESGWSAPI---KTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALSCEYTN 293 (313)
T ss_pred CEEEEEeCCceEEEEcCCCCeEecCCC---CcccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999998753 44555654 3489999999999999999999999999999999999999999999874
No 15
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=5.3e-43 Score=306.56 Aligned_cols=288 Identities=26% Similarity=0.364 Sum_probs=242.6
Q ss_pred CCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeE
Q 020625 11 GNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVH 90 (323)
Q Consensus 11 G~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~ 90 (323)
|++++|++..+++ +|.++...+..+...++||.+.|+|..|++ +| .++.++|.+|+|..|+.+++.|++.||+++
T Consensus 1 G~~~~D~~~~~~~--~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~-lg--~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 75 (293)
T TIGR02152 1 GSINMDLVLRTDR--LPKPGETVHGHSFQIGPGGKGANQAVAAAR-LG--AEVSMIGKVGDDAFGDELLENLKSNGIDTE 75 (293)
T ss_pred CCceEeEEEEeCC--CCCCCCcEecCCceecCCCcHHHHHHHHHH-CC--CCEEEEEEecCCccHHHHHHHHHHcCCCee
Confidence 7899999999998 788889999999999999999999999998 56 999999999999999999999999999999
Q ss_pred Eee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHHHhCC
Q 020625 91 YYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANN 168 (323)
Q Consensus 91 ~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+++ ..+.+|+.++++.+ +++|+++.+.++...++++++.. ..+.++.++++++++ +.+.+.+..+++.+++++
T Consensus 76 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 150 (293)
T TIGR02152 76 YVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDA--AEALIAESDIVLLQL---EIPLETVLEAAKIAKKHG 150 (293)
T ss_pred EEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHH--HHhhhccCCEEEEec---CCCHHHHHHHHHHHHHcC
Confidence 986 45568999888876 58887776666655666665542 345678999999874 446678889999999999
Q ss_pred CeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCc
Q 020625 169 KVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP 248 (323)
Q Consensus 169 ~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G 248 (323)
.++++|+.... ....+.+++++|++++|++|++.+++....+.++.+++++.+ ...|++.+++|+|++|
T Consensus 151 ~~v~~D~~~~~-----~~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l------~~~g~~~vvvt~G~~g 219 (293)
T TIGR02152 151 VKVILNPAPAI-----KDLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKL------LEKGVKNVIITLGSKG 219 (293)
T ss_pred CEEEEECCcCc-----ccchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHH------HHcCCCeEEEEeCCCc
Confidence 99999996532 111257789999999999999999876544445677788888 5668899999999999
Q ss_pred eEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccC--CCCCCC
Q 020625 249 VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTY--PEKPEF 322 (323)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~--p~~~~~ 322 (323)
++++++++.+++++++ .+++||+||||+|+|||+++|++|+++++|+++|+++|++++++.|+.. |+.+++
T Consensus 220 ~~~~~~~~~~~~~~~~---~~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~ 292 (293)
T TIGR02152 220 ALLVSKDESKLIPAFK---VKAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVTRKGAQSSIPYLEEV 292 (293)
T ss_pred eEEEeCCceeEccCCC---CceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcccCcccCCCChHHc
Confidence 9999888777776543 4789999999999999999999999999999999999999999999964 877765
No 16
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=1.7e-43 Score=310.96 Aligned_cols=292 Identities=26% Similarity=0.410 Sum_probs=237.2
Q ss_pred ceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHH
Q 020625 5 GILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKL 84 (323)
Q Consensus 5 ~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~ 84 (323)
++|+|+|++++|++..++. + ++...+.......+||.+.|+|.+|++ +| .++.++|.+|+|.+|+.+++.|++
T Consensus 2 ~~v~~iG~~~iD~~~~~~~--~--~~~~~~~~~~~~~~GG~~~n~a~~l~~-LG--~~v~~i~~vG~D~~g~~i~~~l~~ 74 (301)
T PF00294_consen 2 KKVLVIGEVNIDIIGYVDR--F--KGDLVRVSSVKRSPGGAGANVAIALAR-LG--ADVALIGKVGDDFFGEIILEELKE 74 (301)
T ss_dssp EEEEEESEEEEEEEEESSS--H--TTSEEEESEEEEEEESHHHHHHHHHHH-TT--SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CcEEEECccceEEEeecCC--c--CCcceecceEEEecCcHHHHHHHHHHh-cc--CcceEEeeccCcchhhhhhhcccc
Confidence 4899999999999999987 4 344448888899999999999999998 66 999999999999999999999999
Q ss_pred cCceeEEee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEec-cccc-cCHHHHHHH
Q 020625 85 AGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAG-FFLT-VSPDSIQLV 160 (323)
Q Consensus 85 ~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~-~~~~-~~~~~~~~~ 160 (323)
.||+++++. ..+.+|+.++++.+ +|+|++..+.+....++.+++ ....+.+.+++++++ .... .+.+.+..+
T Consensus 75 ~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (301)
T PF00294_consen 75 RGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDEL----DEEAIDEADILHLSGVSLPEGIPEDLLEAL 150 (301)
T ss_dssp TTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHH----HHHHHHTESEEEEESGHCSTTSHHHHHHHH
T ss_pred ccccccccccccccccceeEeeecccccceeeeccccccccccccc----cccccccccceeecccccccccccceeeec
Confidence 999999986 56678999999887 678988887776666666555 346788999999999 3332 344667777
Q ss_pred HHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEE
Q 020625 161 AEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTA 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 240 (323)
.+.+++.+. +......+.|.. ..+.+.++++.+|++++|++|+..+++... ++.+++.+.+.++ ...+++.+
T Consensus 151 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~~~dil~~n~~E~~~l~~~~~---~~~~~~~~~~~~l---~~~g~~~v 222 (301)
T PF00294_consen 151 AKAAKKNGP-FDPVFRDPSWDD-LREDLKELLPYADILKPNEEEAEALTGSKI---DDPEDALAALREL---QARGVKIV 222 (301)
T ss_dssp HHHHHHTTE-EEEEEEGGGSHH-HHHHHHHHHHTSSEEEEEHHHHHHHHTCST---SSHHHHHHHHHHH---HHTTSSEE
T ss_pred ccccccccc-cccccccccccc-cchhhhhhccccchhccccccccccccccc---cchhhhhcccccc---chhhhhhh
Confidence 777777773 333333333322 456688888999999999999999988543 2444444443111 45688999
Q ss_pred EEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCC
Q 020625 241 VITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYP 317 (323)
Q Consensus 241 vit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p 317 (323)
++|+|++|++++++++.+++++. ++.+++|+|||||+|+|||+++|++|+++++|+++|+++|++++++.|+..|
T Consensus 223 ivt~G~~G~~~~~~~~~~~~~~~--~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~a~~~aa~~v~~~g~~~~ 297 (301)
T PF00294_consen 223 IVTLGEDGALYYTNDESYHVPPV--PPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALKFANAAAALKVQQPGPRSP 297 (301)
T ss_dssp EEEEGGGEEEEEETTEEEEEEEE--SSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSGG
T ss_pred hccccccCccccccccccccccc--ccccccceeccchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcCC
Confidence 99999999999998999888864 4558999999999999999999999999999999999999999999999655
No 17
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=2.7e-42 Score=303.55 Aligned_cols=282 Identities=24% Similarity=0.351 Sum_probs=225.5
Q ss_pred ceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHH
Q 020625 5 GILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKL 84 (323)
Q Consensus 5 ~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~ 84 (323)
++|+++|++++|++.... ......+||+++|+|.+|++ +| .++.++|.+|+|.+|+++++.|++
T Consensus 3 ~~il~iG~~~iD~~~~~~-------------~~~~~~~GG~~~N~a~~l~~-LG--~~~~~v~~vG~D~~g~~i~~~l~~ 66 (304)
T PRK09434 3 NKVWVLGDAVVDLIPEGE-------------NRYLKCPGGAPANVAVGIAR-LG--GESGFIGRVGDDPFGRFMQQTLQD 66 (304)
T ss_pred CcEEEecchheeeecCCC-------------CceeeCCCChHHHHHHHHHH-cC--CCceEEEEecCchHHHHHHHHHHH
Confidence 489999999999984311 13456799999999999998 56 999999999999999999999999
Q ss_pred cCceeEEee-cCCCCceeEEEEEe-CCccceeecc--cccccCCcccCCCcchhhhhccccEEEEeccccccCH--HHHH
Q 020625 85 AGVNVHYYE-DESASTGTCAVCVV-GGERSLVANL--SAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSP--DSIQ 158 (323)
Q Consensus 85 ~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~--~~~~ 158 (323)
+||+++++. .++.+|+.+++..+ +|+|++.... ++...++.++++ .+++.+++|++++....++ +...
T Consensus 67 ~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (304)
T PRK09434 67 EGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP------PFRQGEWLHLCSIALSAEPSRSTTF 140 (304)
T ss_pred cCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh------hhcCCCEEEEccccccCchHHHHHH
Confidence 999999985 56778999988876 4778754332 222233333332 3678999999886543232 4567
Q ss_pred HHHHHHHhCCCeEEEeCCch--hHH--HHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCcccc
Q 020625 159 LVAEHAAANNKVFMMNLSAP--FIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASE 234 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~d~~~~--~~~--~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (323)
.+++.+++++.++.+|+... .|. ....+.++.+++++|++++|++|+..+++ .++.+++++++ ..
T Consensus 141 ~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g-----~~~~~~~~~~l------~~ 209 (304)
T PRK09434 141 EAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSG-----TSQLEDAIYAL------AD 209 (304)
T ss_pred HHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhC-----CCCHHHHHHHH------Hh
Confidence 88889999999999988532 231 23456677889999999999999999876 24677888887 43
Q ss_pred -CCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC------CHHHHHHHHhHHHHH
Q 020625 235 -IRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK------PIEECVRAGCYTSHV 307 (323)
Q Consensus 235 -~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~------~~~~a~~~A~~~Aa~ 307 (323)
.+++.++||+|++|++++++++.+++++++ .+++|||||||+|+|||+++|++|+ ++++|+++|+++|++
T Consensus 210 ~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~---~~~vDttGAGD~f~ag~~~~l~~g~~~~~~~~~~~a~~~a~~~Aa~ 286 (304)
T PRK09434 210 RYPIALLLVTLGAEGVLVHTRGQVQHFPAPS---VDPVDTTGAGDAFVAGLLAGLSQAGLWTDEAELAEIIAQAQACGAL 286 (304)
T ss_pred hcCCcEEEEEecCCceEEEeCCceeEeCCCC---CCCCcCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHHH
Confidence 578899999999999999888888887644 4789999999999999999999997 899999999999999
Q ss_pred HhhhcCc--cCCCCCCC
Q 020625 308 IIQRSGC--TYPEKPEF 322 (323)
Q Consensus 308 ~~~~~G~--~~p~~~~~ 322 (323)
++++.|+ ..|..+++
T Consensus 287 ~v~~~g~~~~~~~~~~~ 303 (304)
T PRK09434 287 ATTAKGAMTALPNRQEL 303 (304)
T ss_pred HHcccCCcCCCCChHHc
Confidence 9999996 46776654
No 18
>PLN02323 probable fructokinase
Probab=100.00 E-value=1.4e-42 Score=308.51 Aligned_cols=293 Identities=24% Similarity=0.318 Sum_probs=231.2
Q ss_pred ccceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHH
Q 020625 3 QEGILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNS 82 (323)
Q Consensus 3 ~~~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l 82 (323)
.+++|+++|+.++|++..+++ .|. .........+||++.|+|.+|++ +| .++.++|.+|+|..|+.+++.|
T Consensus 9 ~~~~i~~iG~~~vD~~~~~~~--~~~----~~~~~~~~~~GG~~~NvA~~la~-LG--~~~~~i~~vG~D~~g~~i~~~L 79 (330)
T PLN02323 9 ESSLVVCFGEMLIDFVPTVSG--VSL----AEAPAFKKAPGGAPANVAVGISR-LG--GSSAFIGKVGDDEFGHMLADIL 79 (330)
T ss_pred CCCcEEEechhhhhhccCCCC--CCc----ccccceeecCCChHHHHHHHHHh-cC--CceeEEEEecCChhHHHHHHHH
Confidence 456899999999999988766 332 22445678999999999999998 56 9999999999999999999999
Q ss_pred HHcCceeEEee-cCCCCceeEEEEEe-CCccceeecc--cccccCCcccCCCcchhhhhccccEEEEeccccccC--HHH
Q 020625 83 KLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVANL--SAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVS--PDS 156 (323)
Q Consensus 83 ~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~--~~~ 156 (323)
+++||+++++. .++.+|+.+++..+ +|+|+++.+. ++...++++++.. +.++.++++|++++.+... ...
T Consensus 80 ~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 155 (330)
T PLN02323 80 KKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL----DLIRKAKIFHYGSISLITEPCRSA 155 (330)
T ss_pred HHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh----HHHccCCEEEEechhccCchHHHH
Confidence 99999999985 56678999988875 7888876653 4444566666642 4578899999887653212 245
Q ss_pred HHHHHHHHHhCCCeEEEeCCc--hhHH--HHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCcc
Q 020625 157 IQLVAEHAAANNKVFMMNLSA--PFIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKA 232 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~d~~~--~~~~--~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 232 (323)
+..+++.+++.|.++++|+.. ..|. ....+.++.+++++|++++|++|+..+++.. ..+..++. ++
T Consensus 156 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~---~~~~~~~~-~~------ 225 (330)
T PLN02323 156 HLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGD---DPDDDTVV-KL------ 225 (330)
T ss_pred HHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCC---CccHHHHH-HH------
Confidence 678888999999999999863 2231 2245557788999999999999999997632 12233333 33
Q ss_pred ccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCC-------HHHHHHHHhHHH
Q 020625 233 SEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP-------IEECVRAGCYTS 305 (323)
Q Consensus 233 ~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~-------~~~a~~~A~~~A 305 (323)
...+.+.+|+|+|++|++++++++.++++++++ +++|||||||+|.|||+++|++|++ +++|+++|+++|
T Consensus 226 ~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~A 302 (330)
T PLN02323 226 WHPNLKLLLVTEGEEGCRYYTKDFKGRVEGFKV---KAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACG 302 (330)
T ss_pred HhcCCCEEEEecCCCceEEEeCCCceEeCCccC---CCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence 335789999999999999998877777776543 7899999999999999999999986 899999999999
Q ss_pred HHHhhhcCc--cCCCCCC
Q 020625 306 HVIIQRSGC--TYPEKPE 321 (323)
Q Consensus 306 a~~~~~~G~--~~p~~~~ 321 (323)
++++++.|+ ..|+.++
T Consensus 303 a~~v~~~g~~~~~~~~~~ 320 (330)
T PLN02323 303 AITTTERGAIPALPTKEA 320 (330)
T ss_pred HHHHhccCCccCCCCHHH
Confidence 999999999 4566554
No 19
>PLN02967 kinase
Probab=100.00 E-value=2.8e-42 Score=317.12 Aligned_cols=305 Identities=14% Similarity=0.163 Sum_probs=230.2
Q ss_pred cceEEEeCCceeeeEeecChh--HHhh------HHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchh
Q 020625 4 EGILLGMGNPLLDISSVVDDD--FLNK------YDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFG 75 (323)
Q Consensus 4 ~~~i~viG~~~iD~~~~~~~~--~~~~------~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g 75 (323)
++.|+|+|++.+|++...... .+.. .+...+.......+||.+.|+|.+|++ +| .++.|+|.||+|.+|
T Consensus 196 ~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLAR-LG--~~v~fIg~VGdD~~G 272 (581)
T PLN02967 196 PPLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALAS-LG--GKVAFMGKLGDDDYG 272 (581)
T ss_pred CCeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHH-CC--CCEEEEEEeCCCHHH
Confidence 467999999999997642110 0000 011334566788899999999999998 56 999999999999999
Q ss_pred HHHHHHHHHcCceeEEee-cCCCCceeEEEEEe-CCcccee-ecccccccCCcccCCCcchhhhhccccEEEEecccc--
Q 020625 76 EEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLV-ANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFL-- 150 (323)
Q Consensus 76 ~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~-- 150 (323)
+++++.|++.||+++++. .++.+|+.+++.++ +|+++++ ...+++..+.++++.. ..+..++++|++++.+
T Consensus 273 ~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~----~~l~~A~i~hfgg~~ll~ 348 (581)
T PLN02967 273 QAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI----DVLKEAKMFYFNTHSLLD 348 (581)
T ss_pred HHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH----hHhcCCCEEEEeCchhcc
Confidence 999999999999999985 56778999999886 6777664 4567777777776653 5678999999998653
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEeC--CchhHH--HHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCC---------
Q 020625 151 TVSPDSIQLVAEHAAANNKVFMMNL--SAPFIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETD--------- 217 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~--~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~--------- 217 (323)
....+.+..+++.+++.|+++++|+ +.+.|. ....+.+..+++++|++++|++|+..+++.......
T Consensus 349 e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~ 428 (581)
T PLN02967 349 PTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSK 428 (581)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhc
Confidence 1223678899999999999988876 445562 234556788999999999999999999873210000
Q ss_pred ---CHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCc--ccCCCCcchHHHHHHHHHhhcC-
Q 020625 218 ---DVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDK--LVDTNGAGDAFVGGFLSQLVQE- 291 (323)
Q Consensus 218 ---~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~--~~d~tGAGDaf~ag~~~~l~~g- 291 (323)
...+.+..+ ...+++.++||+|++|+++++++...+++.++.+++. ++|||||||+|.|||+++|+++
T Consensus 429 ~~~~~~e~a~~l------~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~ 502 (581)
T PLN02967 429 FVHYSPEVVAPL------WHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQP 502 (581)
T ss_pred cccchHHHHHHH------HhCCCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhcc
Confidence 012334445 4457899999999999999876543333322222223 5999999999999999999984
Q ss_pred ------CCHHHHHHHHhHHHHHHhhhcCc--cCCCCCC
Q 020625 292 ------KPIEECVRAGCYTSHVIIQRSGC--TYPEKPE 321 (323)
Q Consensus 292 ------~~~~~a~~~A~~~Aa~~~~~~G~--~~p~~~~ 321 (323)
+++++|++||+++||+++++.|+ .+|+.++
T Consensus 503 ~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~e 540 (581)
T PLN02967 503 HLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKED 540 (581)
T ss_pred CcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHH
Confidence 67999999999999999999999 4565543
No 20
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-42 Score=304.08 Aligned_cols=293 Identities=29% Similarity=0.400 Sum_probs=241.5
Q ss_pred eEEEeCCceeeeEee-cChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHH
Q 020625 6 ILLGMGNPLLDISSV-VDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKL 84 (323)
Q Consensus 6 ~i~viG~~~iD~~~~-~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~ 84 (323)
+|+++|+.++|++.. .+. +|.++...........+||++.|+|+++++ +| .++.++|.+|+|.+|+.+++.|++
T Consensus 1 ~v~~iG~~~vD~~~~~~~~--~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~-lG--~~~~~~~~vG~D~~g~~~~~~l~~ 75 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDR--LPEPGETVLGDFFKVAGGGKGANVAVALAR-LG--AKVALIGAVGDDDFGEFLLEELRK 75 (311)
T ss_pred CEEEECchhhheehhhccC--CCCCcccccccceeecCCchHHHHHHHHHH-cC--CceEEEEEecCcHHHHHHHHHHHH
Confidence 489999999999996 555 566666666666788999999999999998 56 899999999999999999999999
Q ss_pred cCceeEEee-cCCCCceeEEEEEe-CCccceeecccc-cccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHH
Q 020625 85 AGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSA-ANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVA 161 (323)
Q Consensus 85 ~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 161 (323)
.||+++++. ..+.+|+.+++.++ +|+|.+..+.+. ...+.++.+.. ..+...+++|++++.+..+++....++
T Consensus 76 ~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~ 151 (311)
T COG0524 76 EGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE----DELAGADVLHISGIQLEIPPEALLAAL 151 (311)
T ss_pred cCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcCh----HHHhhcCeeeEEEeecCCChHHHHHHH
Confidence 999999985 45568999988886 689998887773 44566666552 557899999999988777778999999
Q ss_pred HHHHhCCCeEEEe--CCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccE
Q 020625 162 EHAAANNKVFMMN--LSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRT 239 (323)
Q Consensus 162 ~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (323)
+.+++++.++.+| ++...|. .+.+..+++.+|++++|++|++.+++. ..+..+....+ ...+.+.
T Consensus 152 ~~a~~~g~~v~~d~~~~~~~~~---~~~~~~~l~~~d~~~~n~~E~~~l~g~----~~~~~~~~~~~------~~~~~~~ 218 (311)
T COG0524 152 ELAKAAGVTVSFDLNPRPALWD---RELLEELLALADILFPNEEEAELLTGL----EEDAEAAAALL------LAKGVKT 218 (311)
T ss_pred HHHHHcCCeEEEecCCCccccc---hhhHHHHHhhCCEEeCCHHHHHHHhCC----CccHHHHHHHH------hhcCCCE
Confidence 9999999885554 4544432 566889999999999999999999873 23455555556 6678999
Q ss_pred EEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCcc--CC
Q 020625 240 AVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCT--YP 317 (323)
Q Consensus 240 vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~--~p 317 (323)
+++|+|++|+++++++..++++..+.++++++|||||||+|.|||+++|++|+++++|+++|+++|++++++.|+. .|
T Consensus 219 vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~a~aa~~~~~~g~~~~~p 298 (311)
T COG0524 219 VVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANAAAALAVTRPGARPSLP 298 (311)
T ss_pred EEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCCCCCCC
Confidence 9999999999999875434555444566789999999999999999999999999999999999999999999996 44
Q ss_pred CCC
Q 020625 318 EKP 320 (323)
Q Consensus 318 ~~~ 320 (323)
..+
T Consensus 299 ~~~ 301 (311)
T COG0524 299 TRE 301 (311)
T ss_pred CHH
Confidence 443
No 21
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=6.9e-43 Score=307.47 Aligned_cols=293 Identities=17% Similarity=0.205 Sum_probs=225.5
Q ss_pred eEEEeCCceeeeEeecChhHHhh--HHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHH
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNK--YDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSK 83 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~--~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~ 83 (323)
+|+++|+.++|++..++...+|. +............+|| +.|+|.+|++ +| .++.++|.+|+|.+|+.+++.|+
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~-LG--~~~~~i~~vG~D~~g~~i~~~l~ 76 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLAS-LG--AKVTLLGVVGDDEAGDLLRKLLE 76 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHH-hC--CCeEEEEEEcCCccHHHHHHHHH
Confidence 58999999999998753111222 1222333456678999 6899999998 56 99999999999999999999999
Q ss_pred HcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC--cchhhhhccccEEEEecccc-ccCHHHHHHH
Q 020625 84 LAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFL-TVSPDSIQLV 160 (323)
Q Consensus 84 ~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~ 160 (323)
++||+++++..++.+|+.++++.+++++.+.........++...... ....+.++++|+++++++.+ .++++.+..+
T Consensus 77 ~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~~ 156 (304)
T cd01172 77 KEGIDTDGIVDEGRPTTTKTRVIARNQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEAL 156 (304)
T ss_pred hCCCCcceEecCCCCceEEEEEecCCcEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHHH
Confidence 99999999766667788887777655554433332222333222111 11234578999999987653 4567888999
Q ss_pred HHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEE
Q 020625 161 AEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTA 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 240 (323)
++.+++.+.++++|++...+ ..++++|++++|++|++.+++....+.+++++.++.+. ...+++.+
T Consensus 157 ~~~a~~~~~~v~~D~~~~~~---------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~-----~~~g~~~v 222 (304)
T cd01172 157 IAAARELGIPVLVDPKGRDY---------SKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLL-----ELLNLEAL 222 (304)
T ss_pred HHHHHhcCCCEEEeCCCcch---------hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHH-----HHhCCCeE
Confidence 99999999999999976542 46789999999999999998754333345666666662 23578999
Q ss_pred EEeeCCCceEEee-CCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCCC
Q 020625 241 VITQGADPVVVAQ-DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEK 319 (323)
Q Consensus 241 vit~G~~G~~~~~-~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~~ 319 (323)
++|+|++|+++++ +++.+++++++ ++++|||||||+|.|||+++|++|+++++|+++|+++|+++|++.|+..+.+
T Consensus 223 vvt~G~~G~~~~~~~~~~~~~~~~~---~~vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a~a~Aa~~~~~~g~~~~~~ 299 (304)
T cd01172 223 LVTLGEEGMTLFERDGEVQHIPALA---KEVYDVTGAGDTVIATLALALAAGADLEEAAFLANAAAGVVVGKVGTAPVTP 299 (304)
T ss_pred EEEcCCCccEEEcCCCcEEEecCCC---CCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhheeeecCCCCCcCH
Confidence 9999999999998 66778887654 4799999999999999999999999999999999999999999999975543
No 22
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=6.6e-42 Score=299.87 Aligned_cols=283 Identities=26% Similarity=0.371 Sum_probs=226.7
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+|+|++++|++...+. ......+....+||++.|+|.+|++ +| .++.++|.+|+|.+|+.+.+.|++.
T Consensus 1 ~i~~iG~~~iD~~~~~~~-------~~~~~~~~~~~~GG~~~N~a~~la~-lg--~~~~~i~~vG~D~~g~~i~~~l~~~ 70 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG-------RLEQADSFRKFFGGAEANVAVGLAR-LG--HRVALVTAVGDDPFGRFILAELRRE 70 (294)
T ss_pred CeEEechhheeeecCCCC-------ccchhhccccccCChHHHHHHHHHh-cC--CceEEEEecCCCHHHHHHHHHHHHc
Confidence 589999999999877653 2355566788999999999999998 56 9999999999999999999999999
Q ss_pred CceeEEee-cCCCCceeEEEEEe-CCccceeeccc--ccccCCcccCCCcchhhhhccccEEEEeccccccCH---HHHH
Q 020625 86 GVNVHYYE-DESASTGTCAVCVV-GGERSLVANLS--AANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSP---DSIQ 158 (323)
Q Consensus 86 gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~---~~~~ 158 (323)
||+++++. .++.+|+.+++.++ +|+|++..+.+ +...++.+++. ...+++++++|++++.+...+ +.+.
T Consensus 71 gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (294)
T cd01166 71 GVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLD----EAALAGADHLHLSGITLALSESAREALL 146 (294)
T ss_pred CCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCC----HHHHhCCCEEEEcCcchhhCHHHHHHHH
Confidence 99999984 57778999988876 47787665532 33344444443 356789999999987654433 6788
Q ss_pred HHHHHHHhCCCeEEEeCCchh--H-HHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccC
Q 020625 159 LVAEHAAANNKVFMMNLSAPF--I-CEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEI 235 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~d~~~~~--~-~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (323)
.+++.+++.+.++++|+.... | .....+.++.+++++|++++|++|++.+++... .+++.+.++.+ ..
T Consensus 147 ~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~--~~~~~~~~~~l-------~~ 217 (294)
T cd01166 147 EALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDED--PTDAAERALAL-------AL 217 (294)
T ss_pred HHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCC--chhHHHHHHhh-------cC
Confidence 899999999999999996422 1 112345567889999999999999999976421 12333333332 25
Q ss_pred CccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCc
Q 020625 236 RKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 236 ~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
+++.+++|+|++|++++++++.+++++++. +++||+||||+|+|+|+++|++|+++++|+++|+++|+.+|++.|+
T Consensus 218 g~~~viit~G~~G~~~~~~~~~~~~~~~~~---~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 218 GVKAVVVKLGAEGALVYTGGGRVFVPAYPV---EVVDTTGAGDAFAAGFLAGLLEGWDLEEALRFANAAAALVVTRPGD 293 (294)
T ss_pred CccEEEEEEcCCceEEEECCceEEeCCCCc---ccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 788999999999999998888888776543 7899999999999999999999999999999999999999999986
No 23
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=1.1e-41 Score=298.64 Aligned_cols=279 Identities=25% Similarity=0.313 Sum_probs=226.6
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+|+|++++|++..+++ . .......+||.++|+|.++++ +| .++.++|.+|+|.+|+.+++.|+++
T Consensus 1 ~ilviG~~~~D~~~~~~~--~--------~~~~~~~~GG~~~n~a~~l~~-lg--~~v~~i~~vG~D~~g~~i~~~l~~~ 67 (295)
T cd01167 1 KVVCFGEALIDFIPEGSG--A--------PETFTKAPGGAPANVAVALAR-LG--GKAAFIGKVGDDEFGDFLLETLKEA 67 (295)
T ss_pred CEEEEcceeEEEecCCCC--C--------CccccccCCCcHHHHHHHHHh-cC--CCeEEEEeecCcHHHHHHHHHHHHc
Confidence 589999999999987665 1 445678899999999999997 56 9999999999999999999999999
Q ss_pred CceeEEee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccc--cCHHHHHHHH
Q 020625 86 GVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLT--VSPDSIQLVA 161 (323)
Q Consensus 86 gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~--~~~~~~~~~~ 161 (323)
||+++++. ..+.+|+.++++++ +|+|++....+....+..+.. ...+.++++++++++++... ...+.+.+++
T Consensus 68 gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 144 (295)
T cd01167 68 GVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTE---LNPDLLSEADILHFGSIALASEPSRSALLELL 144 (295)
T ss_pred CCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCcc---CChhHhccCCEEEEechhhccchHHHHHHHHH
Confidence 99999986 57778999998886 788887665554332222110 12355788999999876321 1135678899
Q ss_pred HHHHhCCCeEEEeCCch--hHH--HHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCc
Q 020625 162 EHAAANNKVFMMNLSAP--FIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRK 237 (323)
Q Consensus 162 ~~~~~~~~~~~~d~~~~--~~~--~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (323)
+.+++.+.++.+|+... .|. ....+.++.+++++|++++|++|++.+++. ++..+.++.+ ...++
T Consensus 145 ~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~-----~~~~~~~~~l------~~~g~ 213 (295)
T cd01167 145 EAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGE-----EDPEEIAALL------LLFGL 213 (295)
T ss_pred HHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCC-----CCHHHHHHHH------hhcCC
Confidence 99999999999998632 231 123455778999999999999999998763 3455666777 56789
Q ss_pred cEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC-------CHHHHHHHHhHHHHHHhh
Q 020625 238 RTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK-------PIEECVRAGCYTSHVIIQ 310 (323)
Q Consensus 238 ~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~-------~~~~a~~~A~~~Aa~~~~ 310 (323)
+.+++|+|++|++++++++.+++|+++ .+++|||||||+|.|||+++|++|+ ++++|+++|+++|+++|+
T Consensus 214 ~~vvvt~G~~G~~~~~~~~~~~~~a~~---~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~ 290 (295)
T cd01167 214 KLVLVTRGADGALLYTKGGVGEVPGIP---VEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALRFANAVGALTCT 290 (295)
T ss_pred CEEEEecCCcceEEEECCcceeeCCCC---cceeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHhhHHHhc
Confidence 999999999999999888888888654 4899999999999999999999999 999999999999999999
Q ss_pred hcCc
Q 020625 311 RSGC 314 (323)
Q Consensus 311 ~~G~ 314 (323)
+.|+
T Consensus 291 ~~G~ 294 (295)
T cd01167 291 KAGA 294 (295)
T ss_pred ccCC
Confidence 9986
No 24
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=6.4e-42 Score=297.72 Aligned_cols=276 Identities=22% Similarity=0.265 Sum_probs=224.7
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+|+|++++|++..+++ +|..+......+....+||+++|+|.++++ +| .++.++|.+|+|.+|+.+++.|++.
T Consensus 1 ~v~~iG~~~~D~~~~v~~--~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~-lg--~~~~~~~~vG~D~~g~~i~~~l~~~ 75 (279)
T cd01942 1 DVAVVGHLNYDIILKVES--FPGPFESVLVKDLRREFGGSAGNTAVALAK-LG--LSPGLVAAVGEDFHGRLYLEELREE 75 (279)
T ss_pred CEEEEecceeeeEeeccc--CCCCCceEecceeeecCCcHHHHHHHHHHH-cC--CCceEEEEecCCcchHHHHHHHHHc
Confidence 589999999999999998 777777788888999999999999999998 56 9999999999999999999999999
Q ss_pred CceeEEee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHH
Q 020625 86 GVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEH 163 (323)
Q Consensus 86 gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~ 163 (323)
||+++++. ..+.+|+.++++.+ +++|.+....++...+++++ . ...+++++++|+++.. .+..+++.
T Consensus 76 gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~------~~~~~~~~ 144 (279)
T cd01942 76 GVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-E----ADPDGLADIVHLSSGP------GLIELARE 144 (279)
T ss_pred CCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-c----hhhhcccCEEEeCCch------HHHHHHHH
Confidence 99999984 56678998888776 56776665666555555544 1 2457899999998742 45677778
Q ss_pred HHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEe
Q 020625 164 AAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVIT 243 (323)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit 243 (323)
+++.+.++++|+..... ....+.++.+++++|++++|++|+..+....+. .+.. ...+.+.+++|
T Consensus 145 ~~~~g~~v~~D~~~~~~-~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~--~~~~------------~~~~~~~vvvt 209 (279)
T cd01942 145 LAAGGITVSFDPGQELP-RLSGEELEEILERADILFVNDYEAELLKERTGL--SEAE------------LASGVRVVVVT 209 (279)
T ss_pred HHHcCCeEEEcchhhhh-hccHHHHHHHHhhCCEEecCHHHHHHHHhhcCC--ChHH------------HhcCCCEEEEE
Confidence 88889999999975321 112345778899999999999999654332221 1111 11468899999
Q ss_pred eCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCc
Q 020625 244 QGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 244 ~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
+|++|++++++++.+++|++ ++.+++||+||||+|.|||+++|++|+++++|+++|+++|++++++.|+
T Consensus 210 ~G~~G~~~~~~~~~~~~~~~--~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 210 LGPKGAIVFEDGEEVEVPAV--PAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAASLKVERRGA 278 (279)
T ss_pred ECCCceEEEECCceEEccCc--CcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcccCC
Confidence 99999999988888888764 2458999999999999999999999999999999999999999999986
No 25
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=2.7e-42 Score=305.14 Aligned_cols=296 Identities=17% Similarity=0.185 Sum_probs=223.3
Q ss_pred ccceEEEeCCceeeeEee--cChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHH
Q 020625 3 QEGILLGMGNPLLDISSV--VDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKK 80 (323)
Q Consensus 3 ~~~~i~viG~~~iD~~~~--~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~ 80 (323)
++++|+++|++++|.+.. +++...+.+............+|| +.|+|.++++ +| .++.++|.+|+|..|+.+++
T Consensus 6 ~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~-lg--~~v~~i~~vG~D~~g~~i~~ 81 (315)
T TIGR02198 6 KGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIAS-LG--ARVFLVGVVGDDEAGKRLEA 81 (315)
T ss_pred CCCcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHh-cC--CceEEEEEEecchhHHHHHH
Confidence 367999999999999876 434111112223334455678898 7999999997 56 99999999999999999999
Q ss_pred HHHHcCceeEEee-cCCCCceeEEEEEeCCccceee-cccccccCCcccCCC--cchhhhhccccEEEEecccc-ccCHH
Q 020625 81 NSKLAGVNVHYYE-DESASTGTCAVCVVGGERSLVA-NLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFL-TVSPD 155 (323)
Q Consensus 81 ~l~~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~-~~~~~ 155 (323)
.|++.||+++++. .++.+|+.++++.+.+ +.++. .......++...... +...+.++++|+++++++.. .++++
T Consensus 82 ~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~ 160 (315)
T TIGR02198 82 LLAEEGIDTSGLIRDKDRPTTTKTRVLARN-QQLLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTPR 160 (315)
T ss_pred HHHHCCCCcceEEECCCCCcceEEEEEcCC-eEEEEecCCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCccCHH
Confidence 9999999999874 5667888887776543 22222 111111122211111 11234578999999987653 45678
Q ss_pred HHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccC
Q 020625 156 SIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEI 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (323)
.+..+++.+++.++++++|+.+..+ ..++.+|++++|++|++.+++. ..+.++.+++++.+. ...
T Consensus 161 ~~~~~~~~a~~~g~~v~~D~~~~~~---------~~~~~~d~l~~n~~E~~~l~~~-~~~~~~~~~~~~~l~-----~~~ 225 (315)
T TIGR02198 161 VVQEVIAAARKHGKPVLVDPKGKDF---------SRYRGATLITPNRKEAEAAVGA-CDTEAELVQAAEKLL-----EEL 225 (315)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCcch---------hhcCCCcEECCCHHHHHHHhCC-CCCHHHHHHHHHHHH-----HHc
Confidence 8999999999999999999975421 3478999999999999999872 222344556666652 245
Q ss_pred CccEEEEeeCCCceEEeeC-CeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCc
Q 020625 236 RKRTAVITQGADPVVVAQD-GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 236 ~~~~vvit~G~~G~~~~~~-~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
|.+.++||+|++|++++++ +..+++++++ ++++||+||||+|.|||+++|++|+++++|+++|+++|+++|++.|+
T Consensus 226 g~~~vivT~G~~G~~~~~~~~~~~~~~~~~---~~vvdt~GAGDaf~ag~~~~l~~g~~~~~al~~A~~~aa~~~~~~G~ 302 (315)
T TIGR02198 226 DLEALLVTRSEKGMTLFTREGEPIHIPAQA---REVYDVTGAGDTVIATLALALAAGASLEEACRLANAAAGVVVGKLGT 302 (315)
T ss_pred CCCEEEEEcCCCCeEEEecCCCeEEecCCC---CCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhccCCC
Confidence 7899999999999999874 5677777543 47999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 020625 315 TYPEKPE 321 (323)
Q Consensus 315 ~~p~~~~ 321 (323)
..|.+++
T Consensus 303 ~~~~~~~ 309 (315)
T TIGR02198 303 ATVSPAE 309 (315)
T ss_pred CCCCHHH
Confidence 8776654
No 26
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=4.9e-42 Score=308.36 Aligned_cols=289 Identities=15% Similarity=0.172 Sum_probs=222.0
Q ss_pred ceEEEeCCceeeeEeecC-hhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHH
Q 020625 5 GILLGMGNPLLDISSVVD-DDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSK 83 (323)
Q Consensus 5 ~~i~viG~~~iD~~~~~~-~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~ 83 (323)
..|+|+|++++|++..++ + +|.++. ........+||.+.|+|.++++ +| .++.++|.+|+|.+|+++++.|+
T Consensus 58 ~~v~viG~~~vD~~~~~~~~--~p~~~~--~~~~~~~~~GG~~~NvA~~lar-LG--~~v~~ig~VG~D~~G~~i~~~l~ 130 (362)
T PRK09954 58 EYCVVVGAINMDIRGMADIR--YPQAAS--HPGTIHCSAGGVGRNIAHNLAL-LG--RDVHLLSAIGDDFYGETLLEETR 130 (362)
T ss_pred ccEEEEEEEEEEEEEeeCCc--CcCCCC--CCceEEEecCcHHHHHHHHHHH-cC--CCeEEEEEECCCHHHHHHHHHHH
Confidence 478999999999999887 4 454443 4556788899999999999998 56 99999999999999999999999
Q ss_pred HcCceeEEee-cCCCCceeEEEEEeCCccceeeccc--ccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHH
Q 020625 84 LAGVNVHYYE-DESASTGTCAVCVVGGERSLVANLS--AANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLV 160 (323)
Q Consensus 84 ~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 160 (323)
+.||+++++. .++.+|+.++.+.+.++++++...+ ....++++.+.. ..+.+..++++++++ +.+++.+..+
T Consensus 131 ~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~---~~~~~~~~~~ 205 (362)
T PRK09954 131 RAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNG--SRDLIRHAGVVLADC---NLTAEALEWV 205 (362)
T ss_pred HcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHH--HHHHHhcCCEEEEEC---CCCHHHHHHH
Confidence 9999999875 5677788887776655555544322 222344333321 234467889998875 3456666666
Q ss_pred HHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEE
Q 020625 161 AEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTA 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 240 (323)
++.+ +++++++|+.+..+ .+.++.+++++|++++|++|++.+++....+.++.+++++.+ .+.|++.+
T Consensus 206 ~~~a--~~~~v~~D~~~~~~----~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l------~~~g~~~V 273 (362)
T PRK09954 206 FTLA--DEIPVFVDTVSEFK----AGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNAL------HQQGVQQI 273 (362)
T ss_pred HHhC--CCCcEEEECCCHHH----hhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHH------HHcCCCEE
Confidence 6654 46889999875431 233667899999999999999999874332233456777777 66789999
Q ss_pred EEeeCCCceEEeeCC-eeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCCC
Q 020625 241 VITQGADPVVVAQDG-KLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEK 319 (323)
Q Consensus 241 vit~G~~G~~~~~~~-~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~~ 319 (323)
|||+|++|+++++.+ ..++++++ +++++|||||||+|.|||+++|++|+++++|+++|+++|++++.....+.|..
T Consensus 274 vvt~G~~G~~~~~~~~~~~~~~~~---~v~vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~a~a~Aal~~~s~~~~~~~~ 350 (362)
T PRK09954 274 FVYLPDESVFCSEKDGEQFLLTAP---AHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAMACAAISRASGSLNNPTL 350 (362)
T ss_pred EEEeCCccEEEEeCCCceEeccCC---CcccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcCCCcC
Confidence 999999999988754 35555544 34899999999999999999999999999999999999999987776665654
Q ss_pred C
Q 020625 320 P 320 (323)
Q Consensus 320 ~ 320 (323)
.
T Consensus 351 ~ 351 (362)
T PRK09954 351 S 351 (362)
T ss_pred C
Confidence 3
No 27
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.1e-41 Score=293.86 Aligned_cols=263 Identities=18% Similarity=0.286 Sum_probs=214.7
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+|+|++++|++..+++ +|.++...+..+....+||++.|+|.+|++ +| .++.++|.+|+|..|+.+++.|++
T Consensus 1 ~il~iG~~~iD~~~~~~~--~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~-lG--~~~~~i~~vG~D~~g~~i~~~l~~- 74 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDA--PPQPGGISHSSDSRESPGGGGANVAVQLAK-LG--NDVRFFSNLGRDEIGIQSLEELES- 74 (265)
T ss_pred CEEEEeeeeEEEEEEecC--CCCCCceeecccceeecCchHHHHHHHHHH-cC--CceEEEEEecCChHHHHHHHHHHh-
Confidence 589999999999999988 777888888889999999999999999998 56 999999999999999999999999
Q ss_pred CceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHA 164 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~ 164 (323)
++++..+...+..|+.++++++ +|+|+++...+.. ++++. +..++++|++|+++.. ...++++.+
T Consensus 75 ~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~a 140 (265)
T cd01947 75 GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLK----WPILDEGDGVFITAAA------VDKEAIRKC 140 (265)
T ss_pred cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCC----HhHhccCCEEEEeccc------ccHHHHHHH
Confidence 9999988665668999988886 6888775443221 12222 2457889999998753 124566677
Q ss_pred HhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEee
Q 020625 165 AANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQ 244 (323)
Q Consensus 165 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~ 244 (323)
++.+ .+++|+.... ..+.++++++++|++++|++|+..++. ++.+ .+.+.+.+++|+
T Consensus 141 ~~~~-~~~~d~~~~~----~~~~~~~~~~~~d~~~~n~~e~~~l~~------------~~~~------~~~~~~~viit~ 197 (265)
T cd01947 141 RETK-LVILQVTPRV----RVDELNQALIPLDILIGSRLDPGELVV------------AEKI------AGPFPRYLIVTE 197 (265)
T ss_pred HHhC-CeEeccCccc----cchhHHHHhhhCCEEEeCHHHHHHhhh------------HHHH------HhccCCEEEEEe
Confidence 7665 3456665332 223467889999999999999988642 2344 456789999999
Q ss_pred CCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCc
Q 020625 245 GADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 245 G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
|++|++++++++.+++++++ ++++|||||||+|.|||++++++|+++++|+++|+++|++++++.|+
T Consensus 198 G~~Ga~~~~~~~~~~~~~~~---~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa~~v~~~G~ 264 (265)
T cd01947 198 GELGAILYPGGRYNHVPAKK---AKVPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGAICVSHFGP 264 (265)
T ss_pred CCCCeEEEECCeeEECCCCC---CCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 99999999888877777653 48999999999999999999999999999999999999999999985
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=6e-42 Score=301.49 Aligned_cols=288 Identities=19% Similarity=0.220 Sum_probs=230.6
Q ss_pred EeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCce
Q 020625 9 GMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVN 88 (323)
Q Consensus 9 viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~ 88 (323)
|.=++++|++..+++ +| +++.....+...++||.+.|+|.+|++ +| .++.++|.+|+| .|+.+++.|++.||+
T Consensus 4 ~~~~~~~D~~~~~~~--~~-~g~~~~~~~~~~~~GG~~~NvA~~la~-lG--~~v~~is~vG~D-~g~~~~~~L~~~gId 76 (304)
T TIGR03828 4 VTLNPAIDLTIELDG--LT-LGEVNRVESTRIDAGGKGINVSRVLKN-LG--VDVVALGFLGGF-TGDFIEALLREEGIK 76 (304)
T ss_pred EEcchHHeEEEEccc--cc-cCceeecccccccCCccHHHHHHHHHH-cC--CCeEEEEEecCc-hhHHHHHHHHHCCCc
Confidence 556789999999999 77 888999999999999999999999998 56 999999999999 699999999999999
Q ss_pred eEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhccccEEEEecccc-ccCHHHHHHHHHHH
Q 020625 89 VHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFL-TVSPDSIQLVAEHA 164 (323)
Q Consensus 89 ~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~~ 164 (323)
++++... ..|+.++++.+ +|+++.+...+. .++.+++.. ....+.+++++++|++++.+ ..+++.+..+++.+
T Consensus 77 ~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 153 (304)
T TIGR03828 77 TDFVRVP-GETRINVKIKEPSGTETKLNGPGP--EISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALA 153 (304)
T ss_pred ceEEECC-CCCeeeEEEEeCCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHH
Confidence 9998654 35777776665 676665544332 233333221 01123578999999998754 35667889999999
Q ss_pred HhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEee
Q 020625 165 AANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQ 244 (323)
Q Consensus 165 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~ 244 (323)
++.+.++++|+.... . .+.+....|++++|++|++.+++....+.+++.++++.+ ...+.+.+|+|+
T Consensus 154 ~~~~~~v~~D~~~~~----~---~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vvvT~ 220 (304)
T TIGR03828 154 REKGAKVILDTSGEA----L---RDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAAREL------LDLGAENVLISL 220 (304)
T ss_pred HHcCCEEEEECChHH----H---HHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEEEEcc
Confidence 999999999997532 1 122334578999999999999875433334566777777 566889999999
Q ss_pred CCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCCCCCC
Q 020625 245 GADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKPEF 322 (323)
Q Consensus 245 G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~~~~~ 322 (323)
|++|++++++++.++++++ +.+++|||||||+|.|+|+++|++|+++++|+++|+++|+++|++.|+.+|+++++
T Consensus 221 G~~G~~~~~~~~~~~~~~~---~~~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~Aa~~~~~~G~~~p~~~~~ 295 (304)
T TIGR03828 221 GADGALLVTKEGALFAQPP---KGEVVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAGSAAAFSEGTGLPDPEDI 295 (304)
T ss_pred CCCCcEEEcCCceEEEeCC---CccccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCCCCCCHHHH
Confidence 9999999988777777754 34789999999999999999999999999999999999999999999988877653
No 29
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=2.2e-41 Score=291.94 Aligned_cols=261 Identities=19% Similarity=0.299 Sum_probs=212.0
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+++|++++|.+... ...++||++.|+|.+|++ +| .++.++|.+|+|..|+.+++.|++.
T Consensus 1 ~v~~iG~~~~D~~~~~----------------~~~~~GG~~~Nva~~la~-lG--~~~~~~~~vG~D~~g~~i~~~l~~~ 61 (264)
T cd01940 1 RLAAIGDNVVDKYLHL----------------GKMYPGGNALNVAVYAKR-LG--HESAYIGAVGNDDAGAHVRSTLKRL 61 (264)
T ss_pred CeEEEcceEEEEeccC----------------ceecCCCcHHHHHHHHHH-cC--CCeeEEecccCchhHHHHHHHHHHc
Confidence 5899999999998642 457899999999999998 56 9999999999999999999999999
Q ss_pred CceeEEeecCCCCceeEEEEEeCCccceeecc-cccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVVGGERSLVANL-SAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHA 164 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~ 164 (323)
||+++++...+.+|+.+++..++|+|++..+. +......+.+ .....+++++++|++++.+ .+.+.++++.+
T Consensus 62 gI~~~~v~~~~~~t~~~~~~~~~g~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~a 134 (264)
T cd01940 62 GVDISHCRVKEGENAVADVELVDGDRIFGLSNKGGVAREHPFE----ADLEYLSQFDLVHTGIYSH---EGHLEKALQAL 134 (264)
T ss_pred CCChhheEEcCCCCceEEEEecCCceEEEeecCCcHHhcccCc----ccHhHHhcCCEEEEccccc---HHHHHHHHHHH
Confidence 99999987544578887765557788765442 3222222221 1235578999999997542 56788999999
Q ss_pred HhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEee
Q 020625 165 AANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQ 244 (323)
Q Consensus 165 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~ 244 (323)
++.++++++|++... ..+.++.+++++|++++|++|.. .++.+++++.+ ...+++.+++|+
T Consensus 135 ~~~g~~v~~D~~~~~----~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~~~~l------~~~~~~~vvvT~ 195 (264)
T cd01940 135 VGAGALISFDFSDRW----DDDYLQLVCPYVDFAFFSASDLS---------DEEVKAKLKEA------VSRGAKLVIVTR 195 (264)
T ss_pred HHcCCEEEEcCcccC----CHHHHHhhcccCCEEEechhhcC---------cchHHHHHHHH------HHcCCCEEEEEE
Confidence 999999999997643 22336678999999999987742 23566677777 566889999999
Q ss_pred CCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCC-HHHHHHHHhHHHHHHhhhcCc
Q 020625 245 GADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP-IEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 245 G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~-~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
|++|++++++++.++++++ +.+++|||||||+|.|||+++|++|++ +++|+++|+++|++++++.|+
T Consensus 196 G~~G~~~~~~~~~~~~~~~---~~~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~aa~~~~~~G~ 263 (264)
T cd01940 196 GEDGAIAYDGAVFYSVAPR---PVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCGHEGA 263 (264)
T ss_pred CCCCeEEEeCCeEEecCCc---CCCCCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcccCC
Confidence 9999999988877777754 448999999999999999999999999 999999999999999999986
No 30
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=1.6e-41 Score=296.70 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=218.4
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
.|+|+|++++|++..+++ +|.++..........++||++.|+|.+|++ +| .++.++|.+|+|.+|+.+++.|+++
T Consensus 1 ~v~~iG~~~vD~~~~v~~--~p~~~~~~~~~~~~~~~GG~a~NvA~~la~-lG--~~~~~~~~vG~D~~g~~~~~~l~~~ 75 (290)
T cd01939 1 AVLCVGLTVLDFITTVDK--YPFEDSDQRTTNGRWQRGGNASNSCTVLRL-LG--LSCEFLGVLSRGPVFESLLDDFQSR 75 (290)
T ss_pred CEEEEeeeeeEEEeeecC--CCCCCcceEeeeeeEecCCCHHHHHHHHHH-cC--CceEEEEeecCCHHHHHHHHHHHHc
Confidence 489999999999999998 777777777777889999999999999998 56 9999999999999999999999999
Q ss_pred CceeEEee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHH
Q 020625 86 GVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEH 163 (323)
Q Consensus 86 gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~ 163 (323)
||+++++. .++..+..++++.+ +|+|.++...++...++.+++.. ..++++|++|++++. ++....+++.
T Consensus 76 gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~----~~~~~~~~~~ 147 (290)
T cd01939 76 GIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSK----IDLTQYGWIHFEGRN----PDETLRMMQH 147 (290)
T ss_pred CCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhh----hhhccCCEEEEeccC----HHHHHHHHHH
Confidence 99999974 44444554555554 67887776666655566555543 235789999999854 3445567777
Q ss_pred HHhCC-------CeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCC
Q 020625 164 AAANN-------KVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIR 236 (323)
Q Consensus 164 ~~~~~-------~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (323)
+++.+ +++++|+.... +.+..+++++|++++|++|++.+ + ..+.++.+..+.. ...+
T Consensus 148 ~~~~~~~~~~~~~~v~~d~~~~~------~~~~~~l~~~di~~~n~~~~~~~-~-----~~~~~~~~~~~~~----~~~~ 211 (290)
T cd01939 148 IEEHNNRRPEIRITISVEVEKPR------EELLELAAYCDVVFVSKDWAQSR-G-----YKSPEECLRGEGP----RAKK 211 (290)
T ss_pred HHHhcCcCCCcceEEEEEeccCc------hhhhhHHhhCCEEEEEhHHHHhc-C-----cCCHHHHHHhhhh----hccC
Confidence 77655 57778875321 23558899999999999988764 3 1344454443311 3457
Q ss_pred ccEEEEeeCCCceEEeeC-CeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCC-HHHHHHHHhHHHHHHhhhcCc
Q 020625 237 KRTAVITQGADPVVVAQD-GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP-IEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 237 ~~~vvit~G~~G~~~~~~-~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~-~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
.+.+++|+|++|++++++ ++.+++|+++ ..+++||+||||+|.|||+|+|++|++ +++|+++|+++|++++++.|.
T Consensus 212 ~~~vvvt~G~~G~~~~~~~~~~~~~~~~~--~~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 212 AALLVCTWGDQGAGALGPDGEYVHSPAHK--PIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred CcEEEEEcccCCeEEEcCCCCEEEecCCC--CCCcccCCCchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhhhcC
Confidence 889999999999999875 4566777543 236899999999999999999999995 999999999999999999885
No 31
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=7.2e-41 Score=305.30 Aligned_cols=304 Identities=17% Similarity=0.181 Sum_probs=225.3
Q ss_pred cceEEEeCCceeeeEeecChhHH-------hh-HHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchh
Q 020625 4 EGILLGMGNPLLDISSVVDDDFL-------NK-YDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFG 75 (323)
Q Consensus 4 ~~~i~viG~~~iD~~~~~~~~~~-------~~-~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g 75 (323)
++.|+|+|++.+|.+........ .. .............+||.+.|+|.++++ +| .++.++|.||+|.+|
T Consensus 125 ~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLAR-LG--~~vafIG~VGdD~fG 201 (496)
T PLN02543 125 PPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVR-LG--GRAAFMGKVGDDDFG 201 (496)
T ss_pred CCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHH-CC--CCEEEEEEeCCCHHH
Confidence 46799999999999875322000 00 001113455778999999999999998 56 999999999999999
Q ss_pred HHHHHHHHHcCceeEEee-cCCCCceeEEEEEe--CCcccee--ecccccccCCcccCCCcchhhhhccccEEEEecccc
Q 020625 76 EEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV--GGERSLV--ANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFL 150 (323)
Q Consensus 76 ~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~--~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~ 150 (323)
+++++.|+++||+++++. .++.+|+.+++.++ ++.+.++ ...+++..+.++++.. ..+.+++++|++++.+
T Consensus 202 ~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~----~~l~~a~ilh~~~~~l 277 (496)
T PLN02543 202 EELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNL----AVLKEARMFHFNSEVL 277 (496)
T ss_pred HHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCH----hHhCCCceEEECChhh
Confidence 999999999999999986 56778999988873 3335443 2334555677776653 5678999999998764
Q ss_pred ccC--HHHHHHHHHHHHhCCCeEEEeCC--chhHH--HHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCC------C---
Q 020625 151 TVS--PDSIQLVAEHAAANNKVFMMNLS--APFIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGW------E--- 215 (323)
Q Consensus 151 ~~~--~~~~~~~~~~~~~~~~~~~~d~~--~~~~~--~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~------~--- 215 (323)
.-+ .+....+++.+++.|+.+++|+. .+.|. ....+.+..+++++|++++|++|++.+++.... +
T Consensus 278 ~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~ 357 (496)
T PLN02543 278 TSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQY 357 (496)
T ss_pred cCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchh
Confidence 222 36788899999999999888875 45563 334566788999999999999999999864210 0
Q ss_pred ---------------CCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEece---eCCCCcccCCCCcc
Q 020625 216 ---------------TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVI---VLPKDKLVDTNGAG 277 (323)
Q Consensus 216 ---------------~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~---~~~~~~~~d~tGAG 277 (323)
..+.+++ ..+ ...+.+.+|||+|++|+++++++....++.. .++ ..++||||||
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~-~~l------~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~-~~~VDTTGAG 429 (496)
T PLN02543 358 YAESFEQTKNWRDYYHYTPEEI-APL------WHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLIT-PFTCDRTGSG 429 (496)
T ss_pred hhhhhhhhhcccccccCCHHHH-HHH------HHCCCCEEEEEcCCCcEEEEECCCcccccccccccCC-CCCcCCCchH
Confidence 0123343 344 4457899999999999999975422121111 111 1258999999
Q ss_pred hHHHHHHHHHhhc-------CCCHHHHHHHHhHHHHHHhhhcCc--cCCCCCCC
Q 020625 278 DAFVGGFLSQLVQ-------EKPIEECVRAGCYTSHVIIQRSGC--TYPEKPEF 322 (323)
Q Consensus 278 Daf~ag~~~~l~~-------g~~~~~a~~~A~~~Aa~~~~~~G~--~~p~~~~~ 322 (323)
|+|.|||+++|++ ++++++|+++|+++|+++|++.|+ .+|+.+|+
T Consensus 430 DAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev 483 (496)
T PLN02543 430 DAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESAT 483 (496)
T ss_pred HHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHH
Confidence 9999999999985 779999999999999999999998 46766553
No 32
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=5.2e-41 Score=296.93 Aligned_cols=288 Identities=19% Similarity=0.162 Sum_probs=222.7
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcE--EEEeeeecCchhHHHHHHHH
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGAT--SYIGCIGKDKFGEEMKKNSK 83 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v--~~~~~vG~D~~g~~i~~~l~ 83 (323)
+++++|++.+|.+...+. ......+||++.|+|++++++.|.+.++ .+++.+|+| +|+.+++.|+
T Consensus 1 ~~~~~G~~~~d~i~~~~~------------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~ 67 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELE 67 (328)
T ss_pred CccccCcEEeeccccCCC------------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHH
Confidence 478999999999988663 3466789999999999998622422366 889999999 8999999999
Q ss_pred HcCceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHH
Q 020625 84 LAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAE 162 (323)
Q Consensus 84 ~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~ 162 (323)
+.||++++...++.+|+.+++.++ +++|.++.+.+.+..+++++++. ..+..++++|+++.... ..+...++++
T Consensus 68 ~~GVd~~~~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~----~~~~~a~~~hl~~~~~~-~~~~~~~~~~ 142 (328)
T cd01943 68 SWGTGMVFRRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNS----TPLIRSSCIHLICSPER-CASIVDDIIN 142 (328)
T ss_pred hcCCceEEEeCCCCcchhhhhhcCCCCcceeeecCccccccccccccc----ccccCCCeEEEECCHHH-HHHHHHHHHH
Confidence 999999994456778998887775 67777777666666777777764 34678999999875321 1267788888
Q ss_pred HHHh------CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHH-----HHHhcCCc
Q 020625 163 HAAA------NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIA-----LKLSQWPK 231 (323)
Q Consensus 163 ~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~-----~~l~~~~~ 231 (323)
.+++ .+..+++|+.+..+.....+.+..+++++|++++|++|++.+++....+....++.. ..+..+
T Consensus 143 ~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-- 220 (328)
T cd01943 143 LFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGI-- 220 (328)
T ss_pred HHHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhh--
Confidence 8888 778888998754222112345789999999999999999999875433222222111 111111
Q ss_pred cccCCccEEEEeeCCCceEEee--CCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHh
Q 020625 232 ASEIRKRTAVITQGADPVVVAQ--DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVII 309 (323)
Q Consensus 232 ~~~~~~~~vvit~G~~G~~~~~--~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~ 309 (323)
...+.+.+|||+|++|+++++ +++.+++|++++++.+++|||||||+|.|||+++|++|+++++|+++|+++|++++
T Consensus 221 -~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~~~~al~~a~a~Aa~~v 299 (328)
T cd01943 221 -LQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALTKSIDEACIYGSVAASFAI 299 (328)
T ss_pred -hccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345788999999999999987 45677777765544589999999999999999999999999999999999999999
Q ss_pred hhcCc
Q 020625 310 QRSGC 314 (323)
Q Consensus 310 ~~~G~ 314 (323)
++.|.
T Consensus 300 ~~~G~ 304 (328)
T cd01943 300 EQVGL 304 (328)
T ss_pred ccCCC
Confidence 99996
No 33
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=1.1e-40 Score=294.21 Aligned_cols=294 Identities=17% Similarity=0.156 Sum_probs=232.3
Q ss_pred CCccceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHH
Q 020625 1 MAQEGILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKK 80 (323)
Q Consensus 1 m~~~~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~ 80 (323)
||++ -.+|.-++++|++..+++ +| ++...++.....++||++.|+|..+++ +| .++.++|.+|+|..|+. .+
T Consensus 1 ~~~~-~~~~~~~p~~D~~~~~~~--~~-~~~~~~~~~~~~~~GG~~~Nva~~la~-lG--~~~~~i~~vG~D~~~~~-~~ 72 (312)
T PRK09513 1 MSRR-VATITLNPAYDLVGFCPE--IE-RGEVNLVKTTGLHAAGKGINVAKVLKD-LG--IDVTVGGFLGKDNQDGF-QQ 72 (312)
T ss_pred CCce-EEEEecChHHeEEEEcCc--ee-cCCeeeecceeecCCchHHHHHHHHHH-cC--CCeEEEEEecCccHHHH-HH
Confidence 6664 555889999999999999 66 588899999999999999999999998 56 99999999999999986 68
Q ss_pred HHHHcCceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhccccEEEEeccccc-cCHHH
Q 020625 81 NSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFLT-VSPDS 156 (323)
Q Consensus 81 ~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~~-~~~~~ 156 (323)
.|+++||++.++..++ +|+.++++++ +++++.+...+. .+++.+... ......++++|++|++|+.+. ...+.
T Consensus 73 ~l~~~gv~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~ 149 (312)
T PRK09513 73 LFSELGIANRFQVVQG-RTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEA 149 (312)
T ss_pred HHHHcCCCccEEECCC-CCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHH
Confidence 9999999988776544 6888777775 677765544331 233332221 011345789999999987542 34578
Q ss_pred HHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCC
Q 020625 157 IQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIR 236 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (323)
+..+++.+++.+.++++|++... . .+.+....+++++|++|+..+++....+.+++.++++.+ ...+
T Consensus 150 ~~~~~~~a~~~g~~v~~D~~~~~----~---~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l------~~~g 216 (312)
T PRK09513 150 FTDWMTRLRSQCPCIIFDSSREA----L---VAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHAL------REQG 216 (312)
T ss_pred HHHHHHHHHhcCCEEEEECChHH----H---HHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcC
Confidence 88999999999999999997532 1 223455778999999999999875443334555677777 5678
Q ss_pred ccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccC
Q 020625 237 KRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTY 316 (323)
Q Consensus 237 ~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~ 316 (323)
++.+++|+|++|++++++++.++.+++ +++++||+||||+|.|||+++|++|+++++|+++|+++|++++++.|...
T Consensus 217 ~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~~~A~a~Aa~~~~~~~~~~ 293 (312)
T PRK09513 217 IAHVVISLGAEGALWVNASGEWIAKPP---ACDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVSALAVSQSNVGI 293 (312)
T ss_pred CCEEEEEeCCCCcEEEeCCceEEecCC---CccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999887766666653 34799999999999999999999999999999999999999999998877
Q ss_pred CCCCC
Q 020625 317 PEKPE 321 (323)
Q Consensus 317 p~~~~ 321 (323)
|+.+|
T Consensus 294 ~~~~e 298 (312)
T PRK09513 294 TDRPQ 298 (312)
T ss_pred CCHHH
Confidence 77654
No 34
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.7e-40 Score=290.05 Aligned_cols=283 Identities=19% Similarity=0.260 Sum_probs=220.1
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
.|+++|++++|++..+++ .|.++..... .....+||+++|+|..+++ +| .++.++|.+|+|..|+.+++.|++.
T Consensus 1 ~v~~~G~~~~D~~~~~~~--~~~~~~~~~~-~~~~~~GG~~~Nva~~l~~-lG--~~~~~~~~lG~D~~g~~i~~~L~~~ 74 (288)
T cd01941 1 EIVVIGAANIDLRGKVSG--SLVPGTSNPG-HVKQSPGGVGRNIAENLAR-LG--VSVALLSAVGDDSEGESILEESEKA 74 (288)
T ss_pred CeEEEEeEEEeeeecccC--ccccCCCCCe-eEEEccCcHHHHHHHHHHH-hC--CCcEEEEEEecCccHHHHHHHHHHc
Confidence 389999999999999888 5555554443 4678999999999999998 56 9999999999999999999999999
Q ss_pred CceeEEeecCCCCceeEEEEEe-CCccceee-cccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVV-GGERSLVA-NLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEH 163 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~ 163 (323)
||+++++...+.+|+.++.+++ +++|.+.. .......++++.++ .....+..++++++++ ..+++.+..+++.
T Consensus 75 gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~v~~~~---~~~~~~~~~~~~~ 149 (288)
T cd01941 75 GLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLR--KIREALKEAKPIVVDA---NLPEEALEYLLAL 149 (288)
T ss_pred CCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHH--HHHHHHhcCCEEEEeC---CCCHHHHHHHHHh
Confidence 9999998766778999888876 67776522 22222223322221 1234578999999875 3456778889999
Q ss_pred HHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEe
Q 020625 164 AAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVIT 243 (323)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit 243 (323)
+++.+.++++|+..... ..+ +..+++++|++++|++|++.+++....+.+...++++.+ ...+++.+++|
T Consensus 150 a~~~~~~v~~d~~~~~~---~~~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vvit 219 (288)
T cd01941 150 AAKHGVPVAFEPTSAPK---LKK-LFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKIL------LLPGIKNVIVT 219 (288)
T ss_pred hhhcCCcEEEEccchHH---hcc-chhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHH------HHcCCcEEEEE
Confidence 99999999999864321 111 125889999999999999999875433323344555666 56688999999
Q ss_pred eCCCceEEeeC---CeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 244 QGADPVVVAQD---GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 244 ~G~~G~~~~~~---~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
+|++|++++++ +..+++|++ .+.+++||+||||+|.|+|+++|++|+++++|+++|+++|+++|+.
T Consensus 220 ~G~~Ga~~~~~~~~~~~~~~~~~--~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a~~~Aa~~~~~ 288 (288)
T cd01941 220 LGAKGVLLSSREGGVETKLFPAP--QPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQAAAALTLES 288 (288)
T ss_pred eCCCcEEEEecCCCceeEEecCC--CCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999986 456777752 2447999999999999999999999999999999999999999863
No 35
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=1.7e-40 Score=292.55 Aligned_cols=291 Identities=19% Similarity=0.186 Sum_probs=229.7
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
-+.|.=++.+|++..+++ ++ ++...+.......+||++.|+|.+|++ +| .++.+++.+|+ .+|+.+++.|++.
T Consensus 4 i~~~~~~p~~d~~~~~~~--~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~-lG--~~~~~i~~vG~-~~g~~i~~~l~~~ 76 (309)
T PRK10294 4 IYTLTLAPSLDSATITPQ--IY-PEGKLRCSAPVFEPGGGGINVARAIAH-LG--GSATAIFPAGG-ATGEHLVSLLADE 76 (309)
T ss_pred EEEEecChHHeEEEEeCc--ee-eCCeEEeccceecCCccHHHHHHHHHH-cC--CCeEEEEEecC-ccHHHHHHHHHHc
Confidence 577779999999999998 64 678899999999999999999999998 56 99999999996 7999999999999
Q ss_pred CceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC-cchhhhhccccEEEEecccc-ccCHHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK-PENWALVEKAKYFYIAGFFL-TVSPDSIQLVAE 162 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~ 162 (323)
||+++++...+..++...+..+ +|++.++...+. .++.++++. ......+++.++++++++.+ ..+.+.+..+++
T Consensus 77 gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~ 154 (309)
T PRK10294 77 NVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLIS 154 (309)
T ss_pred CCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCC--CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHH
Confidence 9999998654443443444444 567665554443 244433322 01123467899999998764 334578899999
Q ss_pred HHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCC-ccEEE
Q 020625 163 HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIR-KRTAV 241 (323)
Q Consensus 163 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~vv 241 (323)
.+++.|.++++|+.... ..+. ..++++|++++|++|+..+++....+.++++++++.+ ...+ .+.++
T Consensus 155 ~a~~~g~~v~~D~~~~~----~~~~--~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l------~~~~~~~~vv 222 (309)
T PRK10294 155 AAQKQGIRCIIDSSGDA----LSAA--LAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQEL------VNSGKAKRVV 222 (309)
T ss_pred HHHHcCCeEEEeCCCHH----HHHH--HhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCCEEE
Confidence 99999999999997543 1111 1256899999999999999876544444566777777 4455 78999
Q ss_pred EeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCCCC
Q 020625 242 ITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKP 320 (323)
Q Consensus 242 it~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~~~ 320 (323)
+|+|++|++++++++.+++++++ ++++|||||||+|.|||+++|++|+++++|+++|+++|++++++.|+.+++.+
T Consensus 223 vT~G~~G~~~~~~~~~~~~~~~~---v~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~a~a~aa~~v~~~G~~~~~~~ 298 (309)
T PRK10294 223 VSLGPQGALGVDSENCIQVVPPP---VKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATLNQGTRLCSHD 298 (309)
T ss_pred EecCCCceEEEcCCccEEEeCCC---cccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCCHH
Confidence 99999999999877777777543 47899999999999999999999999999999999999999999999866644
No 36
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=4.5e-40 Score=282.91 Aligned_cols=258 Identities=17% Similarity=0.242 Sum_probs=206.0
Q ss_pred ceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHH
Q 020625 5 GILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKL 84 (323)
Q Consensus 5 ~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~ 84 (323)
++|+++|++++|+....+ ..++||.+.|+|..|++ +| .++.++|.+|+|.+|+.+++.|++
T Consensus 1 ~~v~~iG~~~~D~~~~~~----------------~~~~GG~~~NvA~~l~~-lG--~~~~~is~vG~D~~g~~i~~~l~~ 61 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG----------------KAFSGGNAVNVAVYCTR-YG--IQPGCITWVGDDDYGTKLKQDLAR 61 (260)
T ss_pred CeEEEeccceeeecccCC----------------ccccCccHHHHHHHHHH-cC--CcceEEEEecCcHHHHHHHHHHHH
Confidence 479999999999986542 25899999999999998 56 999999999999999999999999
Q ss_pred cCceeEEeecCCCCceeEEEEEeCCccceeecc-cccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHH
Q 020625 85 AGVNVHYYEDESASTGTCAVCVVGGERSLVANL-SAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEH 163 (323)
Q Consensus 85 ~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~ 163 (323)
+||+++++...+.+|+.+++.+++++|++..+. +....+..++. ..+.+.++++++++.+. ...++++.
T Consensus 62 ~gI~~~~~~~~~~~t~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~----~~~~l~~~~~v~~~~~~------~~~~~~~~ 131 (260)
T PRK09813 62 MGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADFALSEE----DYAWLAQYDIVHAAIWG------HAEDAFPQ 131 (260)
T ss_pred cCCcchheeeecCCCceEEEEEeCCcEEeeccCCCcccccccCHH----HHHHHHhCCEEEEeccc------hHHHHHHH
Confidence 999999986544568887777767787765443 32222222211 23457889999996421 13567777
Q ss_pred HHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEe
Q 020625 164 AAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVIT 243 (323)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit 243 (323)
+++++.++++|+.... ..+.+..+++++|+++.|+++. ..+++++++.+ .+.+.+.++||
T Consensus 132 ~~~~~~~v~~D~~~~~----~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~------~~~g~~~viit 191 (260)
T PRK09813 132 LHAAGKLTAFDFSDKW----DSPLWQTLVPHLDYAFASAPQE----------DEFLRLKMKAI------VARGAGVVIVT 191 (260)
T ss_pred HHHcCCeEEEEcCCCc----cHHHHHHhCCceeEEEecCCcc----------hHHHHHHHHHH------HHcCCCEEEEE
Confidence 8889999999997542 2233567899999999886531 12456677777 56688999999
Q ss_pred eCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCc
Q 020625 244 QGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 244 ~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
+|++|++++++++.+++|+++. +++|||||||+|.|||++++++|+++++|+++|+++|++++++.|+
T Consensus 192 ~G~~Ga~~~~~~~~~~~~~~~~---~~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 192 LGENGSIAWDGAQFWRQAPEPV---TVVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred ECCCceEEEECCEEEecCCccc---CCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 9999999998888888887654 7899999999999999999999999999999999999999999986
No 37
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=4.1e-40 Score=287.65 Aligned_cols=282 Identities=22% Similarity=0.221 Sum_probs=224.9
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
...++|+.++|++..+++ +|. +...+.......+||.++|+|.+|++ +| .++.++|.+|+| +|+.+++.|++.
T Consensus 2 ~~~~~~~~~~D~~~~~~~--~~~-~~~~~~~~~~~~~GG~~~Nva~~la~-lG--~~v~~is~vG~D-~g~~i~~~l~~~ 74 (289)
T cd01164 2 IYTVTLNPAIDLTIELDQ--LQP-GEVNRVSSTRKDAGGKGINVARVLKD-LG--VEVTALGFLGGF-TGDFFEALLKEE 74 (289)
T ss_pred EEEEecChHHeEEEEcCc--ccC-CceeecccccccCCcchhHHHHHHHH-cC--CCeEEEEEccCc-hhHHHHHHHHHc
Confidence 467899999999999999 554 68888888999999999999999998 56 999999999998 799999999999
Q ss_pred CceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhccccEEEEeccccc-cCHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFLT-VSPDSIQLVA 161 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~~-~~~~~~~~~~ 161 (323)
||+++++... .+|+..+++.+ ++++..+...+ ..++++++.. +...+.+++++++|+++..+. .+.+....++
T Consensus 75 gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 151 (289)
T cd01164 75 GIPDDFVEVA-GETRINVKIKEEDGTETEINEPG--PEISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELV 151 (289)
T ss_pred CCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCC--CCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHH
Confidence 9999998653 35677776665 35554443322 2233333321 011234678999999986542 3457888999
Q ss_pred HHHHhCCCeEEEeCCchhHHHHHHHHHHhhc-CCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEE
Q 020625 162 EHAAANNKVFMMNLSAPFICEFFKDALEKVL-PYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTA 240 (323)
Q Consensus 162 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l-~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 240 (323)
+.+++.+.++.+|+.... +.+++ +.+|++++|++|++.+++....+.+++.++++.+ ...+++.+
T Consensus 152 ~~~~~~~~~i~~D~~~~~--------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l------~~~g~~~v 217 (289)
T cd01164 152 RLAREKGARVILDTSGEA--------LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKL------IERGAENV 217 (289)
T ss_pred HHHHHcCCeEEEECChHH--------HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEE
Confidence 999999999999996432 22233 7999999999999999876544445677777777 56678899
Q ss_pred EEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCc
Q 020625 241 VITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 241 vit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
++|+|++|++++.+++.++++++ +.+++||+||||+|.|||+++|.+|+++++|+++|+++|+++|++.|+
T Consensus 218 ivt~G~~G~~~~~~~~~~~~~~~---~~~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 218 LVSLGADGALLVTKDGVYRASPP---KVKVVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred EEecCCCCCEEEcCCcEEEecCC---CccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccC
Confidence 99999999999987777777654 347999999999999999999999999999999999999999999986
No 38
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=3.6e-40 Score=289.97 Aligned_cols=288 Identities=21% Similarity=0.224 Sum_probs=229.2
Q ss_pred EEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCc
Q 020625 8 LGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGV 87 (323)
Q Consensus 8 ~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi 87 (323)
.|--++.+|++..+++ + .++......+...++||.+.|+|.++++ +| .++.++|.+|+| .|+.+++.|++.||
T Consensus 3 ~~~~~~~~D~~~~~~~--~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~-lg--~~~~~i~~vG~D-~g~~i~~~l~~~gI 75 (303)
T TIGR03168 3 TVTLNPAIDLTIEVDG--L-TPGEVNRVAAVRKDAGGKGINVARVLAR-LG--AEVVATGFLGGF-TGEFIEALLAEEGI 75 (303)
T ss_pred EEEcchHHeEEEEcCc--c-ccCceeecCcccccCCcchhhHHHHHHH-cC--CCeEEEEEeCCc-hhHHHHHHHHHcCC
Confidence 4566888999999998 4 5577888888899999999999999998 56 999999999998 79999999999999
Q ss_pred eeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhccccEEEEecccc-ccCHHHHHHHHHH
Q 020625 88 NVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFL-TVSPDSIQLVAEH 163 (323)
Q Consensus 88 ~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~ 163 (323)
++.++... ..|+.++.+.+ +|++..+...+ ..++++++.. ....+.+++++++|++++.. .++.+....+++.
T Consensus 76 ~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~ 152 (303)
T TIGR03168 76 KNDFVEVK-GETRINVKIKESSGEETELNEPG--PEISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAI 152 (303)
T ss_pred CceEEECC-CCCEEeEEEEeCCCCEEEEeCcC--CCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHH
Confidence 99998754 35666666655 56555444333 2344444332 01123478999999988643 3567888899999
Q ss_pred HHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEe
Q 020625 164 AAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVIT 243 (323)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit 243 (323)
+++++.++++|+.... .. +.+..++|++++|++|+..+++....+.++++++++.+ ...+++.+++|
T Consensus 153 ~~~~g~~v~~D~~~~~----~~---~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l------~~~g~~~vviT 219 (303)
T TIGR03168 153 ARKRGAKVILDTSGEA----LR---EALAAKPFLIKPNHEELEELFGRELKTEEEIIEAAREL------LDRGAENVLVS 219 (303)
T ss_pred HHHCCCEEEEECCcHH----HH---HHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHH------HHcCCCEEEEe
Confidence 9999999999997532 11 22335799999999999999886443334566777777 56678899999
Q ss_pred eCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCCCCC
Q 020625 244 QGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKPE 321 (323)
Q Consensus 244 ~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~~~~ 321 (323)
+|++|++++++++.+++|+++ .+++|++||||+|.|+|++++++|+++++|+++|+++|+++|++.|+..|+.++
T Consensus 220 ~g~~G~~~~~~~~~~~~~~~~---~~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~aa~~~~~~G~~~~~~~~ 294 (303)
T TIGR03168 220 LGADGALLVTKEGALKATPPK---VEVVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAGSAAAFSPGTGLPDPED 294 (303)
T ss_pred ecCCCcEEEeCCceEEeeCCc---ceeecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcCCCCHHH
Confidence 999999999888877777543 478999999999999999999999999999999999999999999998787654
No 39
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=3.6e-40 Score=290.45 Aligned_cols=288 Identities=18% Similarity=0.176 Sum_probs=223.2
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
-+.+..++++|++..+++ +|.. ...........+||.+.|+|.+|++ +| .++.++|.+|+ ..|+.+++.|++
T Consensus 2 ~~~~t~np~~D~~~~~~~--~~~~-~~~~~~~~~~~~GG~~~NvA~~la~-LG--~~~~~~~~vGd-~~G~~i~~~l~~- 73 (309)
T PRK13508 2 ILTVTLNPSIDISYPLDE--LKLD-TVNRVVDVSKTAGGKGLNVTRVLSE-FG--ENVLATGLIGG-ELGQFIAEHLDD- 73 (309)
T ss_pred EEEEecChHHeEEEEeCC--eeeC-CeEEecceeecCCchHHHHHHHHHH-cC--CCeEEEEEecC-hhHHHHHHHHHc-
Confidence 467889999999999998 5443 3556667889999999999999998 56 99999999996 689999999999
Q ss_pred CceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC--cchhhhhccccEEEEecccccc-CHHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFLTV-SPDSIQLVAE 162 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~~~-~~~~~~~~~~ 162 (323)
||+++++...+ .|+.+..++++|+|+++...++. +..+.... ....+.+.++|++|++++.+.. +.+.+..+++
T Consensus 74 gI~~~~~~~~~-~t~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 150 (309)
T PRK13508 74 QIKHAFYKIKG-ETRNCIAILHEGQQTEILEKGPE--ISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIE 150 (309)
T ss_pred CCCceEEECCC-CCeeeEEEEeCCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHH
Confidence 99999876543 57777777777888776554432 22222111 1123457899999999875432 3467888999
Q ss_pred HHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCC-CCCCHHHHHHHHhcCCccccCCccEEE
Q 020625 163 HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW-ETDDVEEIALKLSQWPKASEIRKRTAV 241 (323)
Q Consensus 163 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vv 241 (323)
.+++.|.++++|+.... .+.+...++.+|++++|++|++.+++.... +.+++.+.++.+ ...+.+.++
T Consensus 151 ~a~~~g~~v~~D~~~~~-----~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~------~~~g~~~vv 219 (309)
T PRK13508 151 LANQAGKPVVLDCSGAA-----LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQP------LFEGIEWII 219 (309)
T ss_pred HHHHCCCEEEEECCcHH-----HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHH------HHcCCCEEE
Confidence 99999999999997532 122334467899999999999999874321 112334444454 456889999
Q ss_pred EeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCC
Q 020625 242 ITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPE 318 (323)
Q Consensus 242 it~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~ 318 (323)
+|+|++|++++++++.++.++++ ++++|||||||+|.|||+++|++|+++++|+++|+++|++++++.+....+
T Consensus 220 vT~G~~G~~~~~~~~~~~~~~~~---v~vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a~aa~~~~~~~~~~~~ 293 (309)
T PRK13508 220 VSLGADGAFAKHNDTFYKVDIPK---IEVVNPVGSGDSTVAGIASGLLHQEDDADLLKKANVLGMLNAQEKQTGHVN 293 (309)
T ss_pred EecCCCceEEEeCCceEEEeCCC---ccccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcCcCCCC
Confidence 99999999998887777777544 479999999999999999999999999999999999999999999886443
No 40
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-40 Score=279.06 Aligned_cols=297 Identities=25% Similarity=0.339 Sum_probs=237.1
Q ss_pred ccceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHH
Q 020625 3 QEGILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNS 82 (323)
Q Consensus 3 ~~~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l 82 (323)
.++.|+|+|++.+|++..+.+ +|.+++..........+||.++|+|++++| || .++.++|.||+|.+|..+.+.|
T Consensus 8 ~~~~vv~fGs~~~D~V~~~~~--~p~~ge~~~~~~f~~~~GG~~aN~Avaaar-LG--~~~afiGkvGdD~fG~~l~~~L 82 (330)
T KOG2855|consen 8 EPPLVVVFGSMLIDFVPSTRR--LPNAGETWEPPGFKTAPGGKGANQAVAAAR-LG--GRVAFIGKVGDDEFGDDLLDIL 82 (330)
T ss_pred CCceEEEeccceeeeeecccc--CCCccccccCCcceecCCCcchhhhhHHHh-cC--cceeeeecccchhhHHHHHHHH
Confidence 456899999999999999999 889999999999999999999999999999 56 9999999999999999999999
Q ss_pred HHcCceeEEee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHH
Q 020625 83 KLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLV 160 (323)
Q Consensus 83 ~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 160 (323)
+++||+++++. ..+.+|+...+.+. +|++.+..+.+++....++..+. ..+.++.++++++....+.-.+.....+
T Consensus 83 ~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~--~~~~i~~ak~~~~q~ei~~~~~~~s~~~ 160 (330)
T KOG2855|consen 83 KQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSEL--NLEVIKEAKVFHCQSEILIEEPMRSLHI 160 (330)
T ss_pred hhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccc--cHHHHhhccEEEEeeecCCcchhHHHHH
Confidence 99999999995 68889999888875 89999888888887666665332 4578999999999865432223233333
Q ss_pred HH--HHHhCCCeE--EEeCCchhHH--HHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCcccc
Q 020625 161 AE--HAAANNKVF--MMNLSAPFIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASE 234 (323)
Q Consensus 161 ~~--~~~~~~~~~--~~d~~~~~~~--~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (323)
.+ .+++.+..+ +.|+.-+.|. ...+..++.++..+|++..+.+|.+.+++. +.++. . +| +.
T Consensus 161 ~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~---~~~~~---~-~L------~~ 227 (330)
T KOG2855|consen 161 AAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGI---EDDKI---L-KL------WH 227 (330)
T ss_pred hhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccC---ccchH---H-HH------hc
Confidence 33 455555433 3344445553 234455888899999999999999988763 11222 3 44 44
Q ss_pred CCccEEEEeeCCCceEEeeCCeee-EEeceeCCCCcccCCCCcchHHHHHHHHHhhcC--CC---HHHHHHHHhHHHHHH
Q 020625 235 IRKRTAVITQGADPVVVAQDGKLK-KFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQE--KP---IEECVRAGCYTSHVI 308 (323)
Q Consensus 235 ~~~~~vvit~G~~G~~~~~~~~~~-~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g--~~---~~~a~~~A~~~Aa~~ 308 (323)
.+.|.+|||+|++|+.||+++..- +++++.+ ++||||||||+|.|||+.+|.+| .+ +++++++|+++++++
T Consensus 228 ~~~k~viVTlG~kG~~y~tk~~~~~~v~~~~V---~~VDtTGAGDsFvgal~~~L~~~~~~~~~~L~~~l~~A~a~~ai~ 304 (330)
T KOG2855|consen 228 MKLKLVIVTLGEKGCRYYTKDFKGSHVPAFKV---KAVDTTGAGDSFVGALAVQLVRGSLLPELSLEEALRFANACGAIT 304 (330)
T ss_pred cCCCEEEEEeCCCceEEEecCCCCCCCCCccc---ccccCCCchHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhhHH
Confidence 556999999999999999877544 7776555 69999999999999999999999 66 999999999999999
Q ss_pred hhhcCc--cCCCCCCC
Q 020625 309 IQRSGC--TYPEKPEF 322 (323)
Q Consensus 309 ~~~~G~--~~p~~~~~ 322 (323)
++++|+ .+|..++.
T Consensus 305 v~~~Ga~~s~p~~~~~ 320 (330)
T KOG2855|consen 305 VQRKGAIPSMPTEKEV 320 (330)
T ss_pred hhccCCCccCccHHHH
Confidence 999999 56665543
No 41
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=1.9e-39 Score=285.89 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=223.4
Q ss_pred EEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcC
Q 020625 7 LLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAG 86 (323)
Q Consensus 7 i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~g 86 (323)
+.|.-++.+|.+..+++ +|..+ ..+..+...++||++.|+|.+|++ +| .++.++|.+|+ .+|+++++.|++.|
T Consensus 2 ~~~~~~p~~d~~~~~~~--~~~~~-~~~~~~~~~~~GG~~~NvA~~la~-LG--~~v~~i~~vG~-~~G~~i~~~l~~~G 74 (309)
T TIGR01231 2 LTVTLNPSVDISYPLTA--LKLDT-VNRVQEVSKTAGGKGLNVTRVLAQ-VG--DPVLASGFLGG-KLGEFIEKELDHSD 74 (309)
T ss_pred EEEEcchHHeEEEEcCC--eeeCc-eEeeceeeecCCccHHHHHHHHHH-cC--CCeEEEEEecC-hhHHHHHHHHHHcC
Confidence 45778899999999988 65545 557788889999999999999998 56 99999999997 58999999999999
Q ss_pred ceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC--cchhhhhccccEEEEecccc-ccCHHHHHHHHHH
Q 020625 87 VNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFL-TVSPDSIQLVAEH 163 (323)
Q Consensus 87 i~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~ 163 (323)
|+++++... ..|+.++.++.+|+|+++...++. +..+.... ......+++++++|++++.+ ..+...+..+++.
T Consensus 75 V~~~~~~~~-~~t~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~ 151 (309)
T TIGR01231 75 IKHAFYKIS-GETRNCIAILHEGQQTEILEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIER 151 (309)
T ss_pred CceeEEECC-CCCEEeEEEEeCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHH
Confidence 999988653 356666666667888776655532 22111100 11234578899999998753 2346788899999
Q ss_pred HHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCC-CCCCHHHHHHHHhcCCccccCCccEEEE
Q 020625 164 AAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW-ETDDVEEIALKLSQWPKASEIRKRTAVI 242 (323)
Q Consensus 164 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vvi 242 (323)
+++.+.++++|+.... .+.+.+.++++|++++|.+|++.+++.... +.+++.++++.+ ...|.+.+++
T Consensus 152 a~~~g~~v~~D~~~~~-----~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~------~~~g~~~viv 220 (309)
T TIGR01231 152 CQNKGVPVVLDCSGAT-----LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQP------LFSGIEWIIV 220 (309)
T ss_pred HHhCCCeEEEECChHH-----HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHH------HHcCCCEEEE
Confidence 9999999999997543 122445567899999999999999874221 112233444444 4567899999
Q ss_pred eeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCC
Q 020625 243 TQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPE 318 (323)
Q Consensus 243 t~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~ 318 (323)
|+|++|++++++++.++++++++ +++|||||||+|.|||+++|++|+++++|+++|+++|++++++.+....+
T Consensus 221 T~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~aa~~~~~~~~~~~~ 293 (309)
T TIGR01231 221 SLGAQGAFAKHGHTFYKVNIPTI---SVVNPVGSGDSTVAGITSALLNHESDHDLLKKANTLGMLNAQEAQTGHVN 293 (309)
T ss_pred ccCCCceEEEeCCeeEEeeCCcc---CcCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 99999999998877777776544 78999999999999999999999999999999999999999988875443
No 42
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-38 Score=265.89 Aligned_cols=290 Identities=22% Similarity=0.214 Sum_probs=242.9
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
-+.+.=++.+|.+..++. + ..+...+..+....+||+|.|||.+|+. +| .++...|.+|.+ .|+.+.+.|+++
T Consensus 2 I~TvTLNPaiD~~~~l~~--l-~~g~vNr~~~~~~~aGGKGINVa~vL~~-lG--~~~~a~GflGg~-tg~~~~~~l~~~ 74 (310)
T COG1105 2 IYTVTLNPALDYTVFLDE--L-ELGEVNRVRAVTKTAGGKGINVARVLKD-LG--IPVTALGFLGGF-TGEFFVALLKDE 74 (310)
T ss_pred eEEEecChhHhheeeccc--c-cccceeeeccceecCCCCceeHHHHHHH-cC--CCceEEEecCCc-cHHHHHHHHHhc
Confidence 467778999999999977 3 4588999999999999999999999997 66 999999999995 789999999999
Q ss_pred CceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC-cchhhh-hccccEEEEecccc-ccCHHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK-PENWAL-VEKAKYFYIAGFFL-TVSPDSIQLVAE 162 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~v~i~~~~~-~~~~~~~~~~~~ 162 (323)
||..++++.. ..|+.++-+.++..........+.+.++.++++. .+.... +.+.|+|+++|..+ .++.+.+.++++
T Consensus 75 gi~~~fv~v~-g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~ 153 (310)
T COG1105 75 GIPDAFVEVK-GDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIR 153 (310)
T ss_pred CCCceEEEcc-CCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHH
Confidence 9999999875 4688888877643322223334445677666655 222333 77899999999774 677899999999
Q ss_pred HHHhCCCeEEEeCCchhHHHHHHHHHHhhc-CCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEE
Q 020625 163 HAAANNKVFMMNLSAPFICEFFKDALEKVL-PYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAV 241 (323)
Q Consensus 163 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l-~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 241 (323)
.+++.+.++++|.+... +...+ ....++++|.+|++.+++....+.+|..++++.+ ...|.+.++
T Consensus 154 ~~~~~g~~vilD~Sg~~--------L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l------~~~g~~~Vi 219 (310)
T COG1105 154 ILRQQGAKVILDTSGEA--------LLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAAREL------LAEGIENVI 219 (310)
T ss_pred HHHhcCCeEEEECChHH--------HHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHH------HHCCCCEEE
Confidence 99999999999998765 33433 3478888999999999998776666788888887 778999999
Q ss_pred EeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCCCC
Q 020625 242 ITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEKP 320 (323)
Q Consensus 242 it~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~~~ 320 (323)
|++|++|+++.+++..+++.+ |++++++++||||++.|||++++.+++++++++++|+++|+.++++.+...|..+
T Consensus 220 VSlG~~Gal~~~~~~~~~a~~---p~~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA~g~a~~~~~~~~~~~~~ 295 (310)
T COG1105 220 VSLGADGALLVTAEGVYFASP---PKVQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVACGAAAASQKGTGIPDLD 295 (310)
T ss_pred EEecCcccEEEccCCeEEEeC---CCcceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCCCCCHH
Confidence 999999999999999888874 3468999999999999999999999999999999999999999999998777665
No 43
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=1.8e-38 Score=294.96 Aligned_cols=294 Identities=14% Similarity=0.136 Sum_probs=219.2
Q ss_pred cceEEEeCCceeeeEeecC--hhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHH
Q 020625 4 EGILLGMGNPLLDISSVVD--DDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKN 81 (323)
Q Consensus 4 ~~~i~viG~~~iD~~~~~~--~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~ 81 (323)
.++|+|+|++++|++..++ +...+.+............+|| ++|+|.+|++ +| .++.++|.+|+|..|+.+++.
T Consensus 10 ~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~-LG--~~v~~i~~vG~D~~g~~i~~~ 85 (473)
T PRK11316 10 RAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIAS-LG--AQARLVGLTGIDEAARALSKL 85 (473)
T ss_pred CCcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHH-cC--CcEEEEEEEcCCHHHHHHHHH
Confidence 4589999999999998752 3111233345666677888999 6999999998 56 999999999999999999999
Q ss_pred HHHcCceeEEeecCCCCceeEEEEEeCCccceeeccc-ccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHH
Q 020625 82 SKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLS-AANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLV 160 (323)
Q Consensus 82 l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 160 (323)
|++.||+++++...+.+|+.++++.+.+......... ....+.++.+.. ...+.++++++++++++.... .+.+..+
T Consensus 86 L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~~v~is~~~~~~-~~~~~~~ 163 (473)
T PRK11316 86 LAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLE-RIEQALPSIGALVLSDYAKGA-LASVQAM 163 (473)
T ss_pred HHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHH-HHHHHhccCCEEEEecCCccc-hhHHHHH
Confidence 9999999999876667788888777533221111111 111112222111 123457899999998764322 3567889
Q ss_pred HHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEE
Q 020625 161 AEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTA 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 240 (323)
++.+++.+.++++|+.... + ..++.+|++++|.+|++.+++... +.++..+.++.+. ...+.+.+
T Consensus 164 ~~~~k~~g~~vv~Dp~~~~--------~-~~~~~~dil~pN~~Ea~~l~g~~~-~~~~~~~~~~~l~-----~~~g~~~v 228 (473)
T PRK11316 164 IQLARKAGVPVLIDPKGTD--------F-ERYRGATLLTPNLSEFEAVVGKCK-DEAELVEKGMKLI-----ADYDLSAL 228 (473)
T ss_pred HHHHHhcCCeEEEeCCCCC--------c-cccCCCeEECcCHHHHHHHhCCCC-CHHHHHHHHHHHH-----HhcCCCEE
Confidence 9999999999999997532 1 346789999999999999987321 1122333444442 34688999
Q ss_pred EEeeCCCceEEeeCCe-eeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCccCCCC
Q 020625 241 VITQGADPVVVAQDGK-LKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCTYPEK 319 (323)
Q Consensus 241 vit~G~~G~~~~~~~~-~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~~p~~ 319 (323)
+||+|++|++++++++ .+++|+++ ++++||+||||+|.|||+++|++|+++++|+++|+++|++++++.|+..|+.
T Consensus 229 vVT~G~~G~~~~~~~~~~~~~~~~~---v~vvDttGAGDaF~aa~~~~l~~g~~~~~al~~A~a~Aa~~v~~~G~~~~~~ 305 (473)
T PRK11316 229 LVTRSEQGMTLLQPGKAPLHLPTQA---REVYDVTGAGDTVISVLAAALAAGNSLEEACALANAAAGVVVGKLGTSTVSP 305 (473)
T ss_pred EEEecCCCcEEEecCCceEEecCcC---CCCCCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccCCCccCCH
Confidence 9999999998887665 46666543 4789999999999999999999999999999999999999999999977765
Q ss_pred CC
Q 020625 320 PE 321 (323)
Q Consensus 320 ~~ 321 (323)
++
T Consensus 306 ~~ 307 (473)
T PRK11316 306 IE 307 (473)
T ss_pred HH
Confidence 44
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=4.4e-36 Score=260.57 Aligned_cols=266 Identities=20% Similarity=0.288 Sum_probs=202.6
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
.|+|+|++++|++..... .....+||.+.|+|.++++ ++ ++.++|.+|+| +|+.+++.|++.
T Consensus 1 ~v~~~G~~~~D~~~~~~~-------------~~~~~~GG~a~N~a~~la~-lg---~v~~i~~vG~D-~g~~~~~~l~~~ 62 (277)
T cd01946 1 SLLVVGSVAFDAIETPFG-------------KVDKALGGSATYFSLSASY-FT---DVRLVGVVGED-FPEEDYKLLNSH 62 (277)
T ss_pred CeEEEEEeeeeeecCCCc-------------eeeeccCchHHHHHHHHHH-hc---cceeEEeccCc-ChHHHHHHHHhc
Confidence 389999999999943221 1356799999999999998 44 49999999999 899999999999
Q ss_pred CceeEEeec-CCCCceeEEEEE--e-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHH
Q 020625 86 GVNVHYYED-ESASTGTCAVCV--V-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVA 161 (323)
Q Consensus 86 gi~~~~~~~-~~~~t~~~~~~~--~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 161 (323)
||+++++.. ++.+|....... + +++++.....+....+.+. ..+.+++++++|+++ ++++....++
T Consensus 63 gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~----~~~~~~~~~~ 132 (277)
T cd01946 63 NIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQ------LPEHYKDSEFVFLGN----IAPELQREVL 132 (277)
T ss_pred cCcceeEEEecCCCeEEEeeEehhhcccccchhhhhhHHhhcCCC------ChHHhhcCCEEEECC----CCHHHHHHHH
Confidence 999999854 545552211111 1 2222222222211122111 224578899999975 3567778888
Q ss_pred HHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEE
Q 020625 162 EHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAV 241 (323)
Q Consensus 162 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 241 (323)
+.+++. .++++|+. ..|.....+.++++++++|++++|++|++.+++ .++++++++.+ ...+++.++
T Consensus 133 ~~~~~~-~~v~~D~~-~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g-----~~~~~~~~~~l------~~~g~~~vv 199 (277)
T cd01946 133 EQVKDP-KLVVMDTM-NFWISIKPEKLKKVLAKVDVVIINDGEARQLTG-----AANLVKAARLI------LAMGPKALI 199 (277)
T ss_pred HHHHhC-CEEEEccH-HHhhhhhHHHHHHHhccCCEEeCCHHHHHHHhC-----CchHHHHHHHH------HHcCCCEEE
Confidence 888776 78999984 345433456678899999999999999999976 34677888888 667899999
Q ss_pred EeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC-----CHHHHHHHHhHHHHHHhhhcCc
Q 020625 242 ITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK-----PIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 242 it~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~-----~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
+|+|.+|++++++++.++++++++ .+++|||||||+|.|||+++|++|+ ++++|+++|+++|+++|++.|+
T Consensus 200 vt~G~~G~~~~~~~~~~~~~~~~~--~~~vDttGAGDaF~Agfl~~l~~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~ 275 (277)
T cd01946 200 IKRGEYGALLFTDDGYFAAPAYPL--ESVFDPTGAGDTFAGGFIGYLASQKDTSEANMRRAIIYGSAMASFCVEDFGT 275 (277)
T ss_pred EecCCCcEEEEECCceEEcCCccc--CccCCCCCchHHHHHHHHHHHHhCCCcchhhHHHHHHHhHHHHhhhhhhcCC
Confidence 999999999998887777776543 2478999999999999999999884 6999999999999999999996
No 45
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-37 Score=243.37 Aligned_cols=290 Identities=17% Similarity=0.236 Sum_probs=236.6
Q ss_pred CCccceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHH
Q 020625 1 MAQEGILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKK 80 (323)
Q Consensus 1 m~~~~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~ 80 (323)
|..++.|+|+|.+.+|.+..++. .|.++...+..+..++-||++.|++.+|+. || .++.|+|.+......+++++
T Consensus 1 m~~~k~VLcVG~~~lD~iTivd~--~~fe~~~~r~~~g~wqRgG~asNvcTvlrl-LG--~~cef~Gvlsr~~~f~~lLd 75 (308)
T KOG2947|consen 1 MEEPKQVLCVGCTVLDVITIVDK--YPFEDSEIRCLSGRWQRGGNASNVCTVLRL-LG--APCEFFGVLSRGHVFRFLLD 75 (308)
T ss_pred CCCcceEEEeccEEEEEEEeccC--CCCCccceehhhhhhhcCCCcchHHHHHHH-hC--CchheeeecccchhHHHHHH
Confidence 66678999999999999999999 778889999999999999999999999995 66 99999999999999999999
Q ss_pred HHHHcCceeEEeecCCCCceeEEEEEe--CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHH
Q 020625 81 NSKLAGVNVHYYEDESASTGTCAVCVV--GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQ 158 (323)
Q Consensus 81 ~l~~~gi~~~~~~~~~~~t~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 158 (323)
.|+++|||++++...+...+.+.++++ .|.|+++......+..+.+++.+ -.+.+..|+|+.+.++...-.+++
T Consensus 76 dl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~k----vdl~qy~WihfE~Rnp~etlkM~~ 151 (308)
T KOG2947|consen 76 DLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEK----VDLTQYGWIHFEARNPSETLKMLQ 151 (308)
T ss_pred HHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhh----cccceeeeEEEecCChHHHHHHHH
Confidence 999999999999776666777666664 68889988877777777777765 347899999999865332234555
Q ss_pred HHHHHHHhCC----CeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCcccc
Q 020625 159 LVAEHAAANN----KVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASE 234 (323)
Q Consensus 159 ~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (323)
.++++..+.+ +.+++|+..+ .|....+....|+++.+++-++.++ ..+++|+++.+....+ .+
T Consensus 152 ~I~~~N~r~pe~qrI~vSvd~en~------req~~~l~am~DyVf~sK~~a~~~g------fks~rea~~~l~~r~~-~~ 218 (308)
T KOG2947|consen 152 RIDAHNTRQPEEQRIRVSVDVENP------REQLFQLFAMCDYVFVSKDVAKHLG------FKSPREACEGLYGRVP-KG 218 (308)
T ss_pred HHHHhhcCCCccceEEEEEEecCc------HHHHHHHhhcccEEEEEHHHHhhhc------cCCHHHHHHHHHhhcc-cC
Confidence 6666554433 5688888764 3668889999999999999888875 3577888777743222 22
Q ss_pred CCccEEEEeeCCCceEEe-eCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHH-hhcCCCHHHHHHHHhHHHHHHhhhc
Q 020625 235 IRKRTAVITQGADPVVVA-QDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQ-LVQEKPIEECVRAGCYTSHVIIQRS 312 (323)
Q Consensus 235 ~~~~~vvit~G~~G~~~~-~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~-l~~g~~~~~a~~~A~~~Aa~~~~~~ 312 (323)
.....+|+-+++.|+-.. ..++.+++++++.| +++|+.|+||+|.||++|+ +.++.++.||+.|||++|++++...
T Consensus 219 ~pkpv~I~~w~~eGA~~l~adg~yfev~a~~pp--kvVD~lg~~DtF~A~vIyA~lk~~r~l~eAvdfg~rvas~Kl~g~ 296 (308)
T KOG2947|consen 219 KPKPVLICPWASEGAGALGADGKYFEVDAFKPP--KVVDTLGAGDTFNAGVIYALLKQGRSLAEAVDFGNRVASKKLGGQ 296 (308)
T ss_pred CCCcEEEeccccccccccCCCCCEEecCCCCCc--cceeeccCCCcchHHHHHHHHHhhhhHHHHHHHHHHhhhcccccc
Confidence 234667888999998655 56678888887544 8999999999999999999 5679999999999999999999999
Q ss_pred Cc
Q 020625 313 GC 314 (323)
Q Consensus 313 G~ 314 (323)
|.
T Consensus 297 Gf 298 (308)
T KOG2947|consen 297 GF 298 (308)
T ss_pred cc
Confidence 87
No 46
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.2e-35 Score=254.68 Aligned_cols=251 Identities=16% Similarity=0.124 Sum_probs=192.3
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+++|++++|++..++. ....+||++.|+|.+|++ +| .++.++|.+|+|..|+ ++.|++.
T Consensus 1 ~il~iG~~~iD~~~~~~~--------------~~~~~GG~~~Nva~~la~-lG--~~~~~i~~vG~D~~g~--~~~l~~~ 61 (254)
T cd01937 1 KIVIIGHVTIDEIVTNGS--------------GVVKPGGPATYASLTLSR-LG--LTVKLVTKVGRDYPDK--WSDLFDN 61 (254)
T ss_pred CeEEEcceeEEEEecCCc--------------eEEecCchhhhHHHHHHH-hC--CCeEEEEeeCCCchHH--HHHHHHC
Confidence 589999999999986432 568899999999999998 56 9999999999999998 6889999
Q ss_pred CceeEEeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHA 164 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~ 164 (323)
||++..+. ...|+.+.+.++ ++++.++...+....+... ...+.++|++|++++ +++....+.+.+
T Consensus 62 gv~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 128 (254)
T cd01937 62 GIEVISLL--STETTTFELNYTNEGRTRTLLAKCAAIPDTES-------PLSTITAEIVILGPV----PEEISPSLFRKF 128 (254)
T ss_pred CcEEEEec--CCCeEEEEEEecCCCCeeeeeccccCCccccc-------ccccCcccEEEECCC----cchhcHHHHhhh
Confidence 99975543 334555555555 5677665554433222111 123678999999864 334444444332
Q ss_pred HhCCCeEEEeCCchhHH--HHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEE
Q 020625 165 AANNKVFMMNLSAPFIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVI 242 (323)
Q Consensus 165 ~~~~~~~~~d~~~~~~~--~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvi 242 (323)
.++++|+... |. ......++++++++|++++|++|++.+ .+.+++++.+ ...+++.+++
T Consensus 129 ----~~v~~D~~~~-~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~--------~~~~~~~~~l------~~~g~~~vvv 189 (254)
T cd01937 129 ----AFISLDAQGF-LRRANQEKLIKCVILKLHDVLKLSRVEAEVI--------STPTELARLI------KETGVKEIIV 189 (254)
T ss_pred ----hheeEccccc-eeeccccchHHHhhcccCcEEEEcHHHHhhc--------CCHHHHHHHH------HHcCCCEEEE
Confidence 5788888642 21 111222568899999999999999872 3577888887 5678899999
Q ss_pred eeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhh
Q 020625 243 TQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQ 310 (323)
Q Consensus 243 t~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~ 310 (323)
|.|++|++++++++.+++++++ .+++||+||||+|.|+|+++|.+|+++++|+++|+++|+++|+
T Consensus 190 t~g~~g~~~~~~~~~~~~~~~~---~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 190 TDGEEGGYIFDGNGKYTIPASK---KDVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred eeCCcceEEEECCccEEccccC---ceeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999888877777654 3789999999999999999999999999999999999999874
No 47
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=3.7e-35 Score=258.25 Aligned_cols=254 Identities=19% Similarity=0.234 Sum_probs=202.8
Q ss_pred ccceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHH
Q 020625 3 QEGILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNS 82 (323)
Q Consensus 3 ~~~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l 82 (323)
+.++|+|+|++++|++..++. .....+||.++|+|.++++ +| .++.++|.+|+|..
T Consensus 10 ~~~~vlvvG~~~~D~i~~~g~-------------~~~~~~GG~a~N~A~alar-LG--~~~~lis~VG~D~~-------- 65 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQNGS-------------VTAESLGGAASFISNVLDA-LS--VECELVSKVGPDFL-------- 65 (335)
T ss_pred CCCCEEEEeeeeeeEEEeCCc-------------EEEEecCcHHHHHHHHHHH-cC--CceEEEEEecCCcc--------
Confidence 357999999999999987532 1457899999999999998 56 99999999999953
Q ss_pred HHcCceeEEeecCCCCceeEEEEEeC------CccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHH
Q 020625 83 KLAGVNVHYYEDESASTGTCAVCVVG------GERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDS 156 (323)
Q Consensus 83 ~~~gi~~~~~~~~~~~t~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~ 156 (323)
.+++...+..++.+|+.+++++++ ++++++...+++..++++++.. ..+...+++++.+ +.+++.
T Consensus 66 --~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~----~~~~~~~~~~l~~---ei~~e~ 136 (335)
T PLN02630 66 --YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPD----MRYEFGMAVGVAG---EILPET 136 (335)
T ss_pred --ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCH----HHhcccceeeecC---CCcHHH
Confidence 367766554466789998887754 3778888889998999888864 2467778888865 345788
Q ss_pred HHHHHHHHHh-----CCCeEEEeCCch---hHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhc
Q 020625 157 IQLVAEHAAA-----NNKVFMMNLSAP---FICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQ 228 (323)
Q Consensus 157 ~~~~~~~~~~-----~~~~~~~d~~~~---~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~ 228 (323)
...+++.++. +++.+.+|+.+. .|.. ....+..+++.+|++++|++|+..+ +.+++.
T Consensus 137 ~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~-~~~~~~~~L~~iDil~~ne~Ea~~l---------~~~~~~----- 201 (335)
T PLN02630 137 LERMVEICDVVVVDIQALIRVFDPVDGTVKLVKL-EETGFYDMLPRIGFLKASSEEALFI---------DVEEVR----- 201 (335)
T ss_pred HHHHHHHhhhheeccCceEEecCCcccccccchh-hHHHHHHHHHhCCEEEecHHHHhhc---------CHHHHc-----
Confidence 8899998887 788888998753 1210 1123568899999999999999875 222221
Q ss_pred CCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHH
Q 020625 229 WPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVI 308 (323)
Q Consensus 229 ~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~ 308 (323)
+ ...+++|+|++|++++++++.++++++++ +++|||||||+|.|||++++++|+++++|+++|+++|+++
T Consensus 202 -----~--~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~~vDttGAGDaF~agfi~~l~~g~~~~~a~~~A~a~aa~~ 271 (335)
T PLN02630 202 -----Q--KCCVIVTNGKKGCRIYWKDGEMRVPPFPA---IQVDPTGAGDSFLGGFVAGLVQGLAVPDAALLGNYFGSLA 271 (335)
T ss_pred -----c--CCEEEEEECCCceEEEECCeeEEeCCCCC---CCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 13799999999999998888778776544 7899999999999999999999999999999999999999
Q ss_pred hhhcCc
Q 020625 309 IQRSGC 314 (323)
Q Consensus 309 ~~~~G~ 314 (323)
+++.|.
T Consensus 272 v~~~G~ 277 (335)
T PLN02630 272 VEQVGI 277 (335)
T ss_pred hCcCCC
Confidence 999995
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-34 Score=245.33 Aligned_cols=287 Identities=17% Similarity=0.179 Sum_probs=230.9
Q ss_pred cceEEEeCCceeeeEeec--ChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHH
Q 020625 4 EGILLGMGNPLLDISSVV--DDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKN 81 (323)
Q Consensus 4 ~~~i~viG~~~iD~~~~~--~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~ 81 (323)
+.+|+|+|.+++|.+++. .++.++.|-....+.....++|| +.|+|.+++. +| .++.++|.+|+|..|+.+...
T Consensus 10 ~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGG-AaNVa~Nias-LG--a~a~l~GvvG~Deag~~L~~~ 85 (467)
T COG2870 10 QAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGG-AANVAKNIAS-LG--ANAYLVGVVGKDEAGKALIEL 85 (467)
T ss_pred CCcEEEEcceeeeeeccccccccCCCCCCceEEeccccccccc-HHHHHHHHHH-cC--CCEEEEEeeccchhHHHHHHH
Confidence 468999999999998884 56567778888999999999999 6999999997 56 999999999999999999999
Q ss_pred HHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC--cchhhhhccccEEEEeccccccCHHHHHH
Q 020625 82 SKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIAGFFLTVSPDSIQL 159 (323)
Q Consensus 82 l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 159 (323)
|...+++..++..+.++|.....++... .+++...- ...+....... +.+...+.+.+.++++.|..+.-.. ...
T Consensus 86 l~~~~i~~~l~~~~~r~T~~K~Rv~s~n-QQllRvD~-Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~-~q~ 162 (467)
T COG2870 86 LKANGIDSDLLRDKNRPTIVKLRVLSRN-QQLLRLDF-EEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTN-VQK 162 (467)
T ss_pred HHhcCcccceEeecCCCceeeeeeeccc-ceEEEecc-cccCcchhHHHHHHHHHHHhhcCCEEEEeccccccchh-HHH
Confidence 9999999888888888898887766422 22222211 01111111111 2244668899999999998654333 889
Q ss_pred HHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccE
Q 020625 160 VAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRT 239 (323)
Q Consensus 160 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (323)
+++.|++.++++.+||.+.. + ...+.+.++.+|..|++...+.+..+ +++.+...+|. ...+...
T Consensus 163 ~I~~ar~~~~pVLvDPKg~D--------f-~~Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~kL~-----~~~~L~a 227 (467)
T COG2870 163 MIDLAREAGIPVLVDPKGKD--------F-EKYRGATLITPNLKEFEEAVGKCKSE-EELEERGQKLK-----EELDLSA 227 (467)
T ss_pred HHHHHHHcCCcEEECCCCcc--------h-hhhCCCeecCCCHHHHHHHHcccccH-HHHHHHHHHHH-----HhhCcce
Confidence 99999999999999998754 2 34678999999999999998876544 44556555553 4456789
Q ss_pred EEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcCcc
Q 020625 240 AVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGCT 315 (323)
Q Consensus 240 vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G~~ 315 (323)
+++|++++|+.+++.++..|+|+.. .++.|.|||||+-+|.|..+|+.|.+++||+.+||++|+.++.+.|..
T Consensus 228 lLvTRsE~GMtL~~~~~~~h~pt~A---kEVyDVTGAGDTVIa~la~~laaG~s~~eAc~lAN~AagiVVgKlGTa 300 (467)
T COG2870 228 LLVTRSEKGMTLFQEGKPLHFPARA---KEVYDVTGAGDTVIAVLAAALAAGASLEEACELANAAAGIVVGKLGTA 300 (467)
T ss_pred EEEEeccCCceeecCCcccccchhh---eeeeeccCCCchHHHHHHHHHHcCCCHHHHHHHhhhhcceEEeeccce
Confidence 9999999999999888878888754 389999999999999999999999999999999999999999999984
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.96 E-value=4.8e-29 Score=205.41 Aligned_cols=195 Identities=26% Similarity=0.324 Sum_probs=161.4
Q ss_pred eEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHc
Q 020625 6 ILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLA 85 (323)
Q Consensus 6 ~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~ 85 (323)
+|+++|++++|.+..+++ .|.++..++..+....+||.+.|+|.+|++ +| .++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~--~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~-LG--~~~~~~~------------------ 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDA--LPLPGGLVRPGDTEERAGGGAANVAVALAR-LG--VSVTLVG------------------ 57 (196)
T ss_pred CEEEEccceEEEEEEecc--CCCCCCeEEeceeeecCCCcHHHHHHHHHH-CC--CcEEEEE------------------
Confidence 489999999999999998 778888899999999999999999999998 66 9999999
Q ss_pred CceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHHH
Q 020625 86 GVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAA 165 (323)
Q Consensus 86 gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~ 165 (323)
+|++|+++..+. .+...++++.++
T Consensus 58 ------------------------------------------------------~~~v~i~~~~~~--~~~~~~~~~~~~ 81 (196)
T cd00287 58 ------------------------------------------------------ADAVVISGLSPA--PEAVLDALEEAR 81 (196)
T ss_pred ------------------------------------------------------ccEEEEecccCc--HHHHHHHHHHHH
Confidence 789999986532 367888999999
Q ss_pred hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeC
Q 020625 166 ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQG 245 (323)
Q Consensus 166 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G 245 (323)
+.+.++++|+......... +.+.++++++|++++|.+|++.+++....+.++..++++.+ ...+.+.+++|+|
T Consensus 82 ~~~~~v~~D~~~~~~~~~~-~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l------~~~g~~~vvvt~G 154 (196)
T cd00287 82 RRGVPVVLDPGPRAVRLDG-EELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALL------LSKGPKVVIVTLG 154 (196)
T ss_pred HcCCeEEEeCCcccccccc-chHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHH------HhcCCCEEEEEEC
Confidence 9999999999765422211 22567889999999999999999876444334455777777 6678899999999
Q ss_pred CCceEEee-CCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhh
Q 020625 246 ADPVVVAQ-DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLV 289 (323)
Q Consensus 246 ~~G~~~~~-~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~ 289 (323)
++|+++++ ++..+++++++ .+++||+||||+|.|||+++|+
T Consensus 155 ~~g~~~~~~~~~~~~~~~~~---~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 155 EKGAIVATRGGTEVHVPAFP---VKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred CCccEEEecCCceEEcCCcc---CCcccCCCchHHHHHHHHHHhC
Confidence 99999998 66677766543 4789999999999999999974
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.81 E-value=6.1e-19 Score=151.07 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=123.7
Q ss_pred ccccEEEEecccc-ccCHHHHHHHHHHHHhC--CCeEEEeCC----chhH--HHHHHHHHHhhcC-CCcEEEeCHHHHHH
Q 020625 138 EKAKYFYIAGFFL-TVSPDSIQLVAEHAAAN--NKVFMMNLS----APFI--CEFFKDALEKVLP-YMDYIFGNETEART 207 (323)
Q Consensus 138 ~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~d~~----~~~~--~~~~~~~~~~~l~-~~dvl~~n~~e~~~ 207 (323)
...+++. .|+.+ ....+.+.++++.+++. +.++++|+. ...| .+...+.+.+++. ++|++++|.+|++.
T Consensus 71 ~~~~~v~-~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAVL-TGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred ccCCEEE-EecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 4567774 55432 22346777888888776 788999983 2222 2335556667666 99999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCC------ceEEeeCCeeeEEeceeCCCCcccCCCCcchHHH
Q 020625 208 FSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD------PVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFV 281 (323)
Q Consensus 208 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~------G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ 281 (323)
+++....+.++++++++.+ .+.+++.+++|.|.. |++++++++.++++.+.. +. ++|++||||+|.
T Consensus 150 l~g~~~~~~~~~~~~~~~l------~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~~~~GaGD~f~ 221 (254)
T cd01173 150 LTGKKINDLEDAKAAARAL------HAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKI-PF-PAYFNGTGDLFA 221 (254)
T ss_pred HcCCCcCCHHHHHHHHHHH------HHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeecc-CC-CCCcCChHHHHH
Confidence 9875443345677888888 667899999999985 788777665555543333 22 699999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 282 GGFLSQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 282 ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
|+|+++|++|+++++|+++|+++....++.
T Consensus 222 a~~~~~l~~g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 222 ALLLARLLKGKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998777654
No 51
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.80 E-value=3.3e-18 Score=147.25 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=123.3
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCch------hHHHHHHH-HHHhhcCCCcEEEeCHHHHHHHHhh
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAP------FICEFFKD-ALEKVLPYMDYIFGNETEARTFSKV 211 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~------~~~~~~~~-~~~~~l~~~dvl~~n~~e~~~l~~~ 211 (323)
.+.+.++- ..+.+.+..+++.+++.+.+ +++||... .+.....+ ..+.+++.+|++++|..|++.|++.
T Consensus 73 ~~~ikiG~---l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 149 (268)
T PRK12412 73 VDALKTGM---LGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGV 149 (268)
T ss_pred CCEEEECC---CCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCc
Confidence 78888753 23678888999999888865 88998531 11112222 2446889999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCce------EEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHH
Q 020625 212 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPV------VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 285 (323)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~------~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~ 285 (323)
...+.+++.++++.+ .+.|++.++||.|..|. ++++++..++++.+ +++.+|++||||+|.|+|+
T Consensus 150 ~~~~~~~~~~aa~~l------~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~---~v~~~~t~GaGD~f~aa~a 220 (268)
T PRK12412 150 KINSLEDMKEAAKKI------HALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESE---KIDTTNTHGAGCTYSAAIT 220 (268)
T ss_pred CCCCHHHHHHHHHHH------HhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeC---ccCCCCCCchHHHHHHHHH
Confidence 433334677888888 66789999999998753 34555555555543 4478999999999999999
Q ss_pred HHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 286 SQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 286 ~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
++|++|+++++|+++|.++...++++
T Consensus 221 a~l~~g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 221 AELAKGKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876
No 52
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.79 E-value=4e-18 Score=145.76 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=124.7
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCC-eEEEeCCc------hhHHHHHHHHH-HhhcCCCcEEEeCHHHHHHHHh
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNK-VFMMNLSA------PFICEFFKDAL-EKVLPYMDYIFGNETEARTFSK 210 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~------~~~~~~~~~~~-~~~l~~~dvl~~n~~e~~~l~~ 210 (323)
+.+.+.++- ..+.+.+..+++.+++++. ++++||.. +.+.....+.+ +.+++++|++++|..|++.|++
T Consensus 67 ~~~aikiG~---l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 143 (254)
T TIGR00097 67 PVDAAKTGM---LASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLG 143 (254)
T ss_pred CCCEEEECC---cCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhC
Confidence 357777752 2367889999999998888 69999742 12222222223 4688999999999999999987
Q ss_pred hcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCC----Cce-EEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHH
Q 020625 211 VQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGA----DPV-VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 285 (323)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~----~G~-~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~ 285 (323)
....+.+++.++++.+ ...|++.+++|.|+ +|. +++++++.++++.+ +++.+|++||||+|.|+|+
T Consensus 144 ~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~GaGD~f~aala 214 (254)
T TIGR00097 144 TKIRTEQDMIKAAKKL------RELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAP---RIETKNTHGTGCTLSAAIA 214 (254)
T ss_pred CCCCCHHHHHHHHHHH------HhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEec---ccCCCCCCChHHHHHHHHH
Confidence 5433334577888888 66789999999997 344 55677666666643 4478999999999999999
Q ss_pred HHhhcCCCHHHHHHHHhHHHHHHhhhc
Q 020625 286 SQLVQEKPIEECVRAGCYTSHVIIQRS 312 (323)
Q Consensus 286 ~~l~~g~~~~~a~~~A~~~Aa~~~~~~ 312 (323)
++|.+|+++++|+++|++++...+++.
T Consensus 215 a~la~g~~l~eA~~~A~~~~~~~i~~~ 241 (254)
T TIGR00097 215 ANLAKGLSLKEAVKEAKEFVTGAIRYG 241 (254)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999763
No 53
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.78 E-value=4e-18 Score=148.42 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=116.4
Q ss_pred hccccEEEEeccccc-cCHHHHHHHHHHHHhCC--CeEEEeCC------chhHHHHHHHHH-HhhcCCCcEEEeCHHHHH
Q 020625 137 VEKAKYFYIAGFFLT-VSPDSIQLVAEHAAANN--KVFMMNLS------APFICEFFKDAL-EKVLPYMDYIFGNETEAR 206 (323)
Q Consensus 137 ~~~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~d~~------~~~~~~~~~~~~-~~~l~~~dvl~~n~~e~~ 206 (323)
+.+.|++ +.|+.+. ...+.+.++++.+++.+ ..+++|+. .....+...+.+ +.+++++|++++|..|++
T Consensus 72 ~~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~ 150 (286)
T TIGR00687 72 LNQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHH
Confidence 3578887 5565432 22357778888887765 55778882 111112333444 468899999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEe-eCCCce--------EEeeCCeeeEEeceeCCCCc-ccCCCCc
Q 020625 207 TFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVIT-QGADPV--------VVAQDGKLKKFPVIVLPKDK-LVDTNGA 276 (323)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit-~G~~G~--------~~~~~~~~~~~~~~~~~~~~-~~d~tGA 276 (323)
.+++....+.++..++++.+ .+.|++.+++| .|.+|+ +++++++.++.+.++ .. ++|++||
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l------~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~Ga 221 (286)
T TIGR00687 151 LLTGRKINTVEEALAAADAL------IAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPL---AVFMRQPVGT 221 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHH------HHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccC---cCCCCCCCCh
Confidence 99875433334566777877 66788999999 687775 445555555555332 24 6899999
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHh
Q 020625 277 GDAFVGGFLSQLVQEKPIEECVRAGCYTSHVII 309 (323)
Q Consensus 277 GDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~ 309 (323)
||+|.|+|+++|++|+++++|+++|+++....+
T Consensus 222 GD~f~A~~l~~l~~g~~~~~al~~A~~~v~~~l 254 (286)
T TIGR00687 222 GDLIAALLLATLLHGNSLKEALEKTVSAVYHVL 254 (286)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999933333
No 54
>PRK05756 pyridoxamine kinase; Validated
Probab=99.78 E-value=4.7e-18 Score=147.93 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=120.5
Q ss_pred hccccEEEEeccccc-cCHHHHHHHHHHHHhCC--CeEEEeCCch-----hH-HHHHHHHH-HhhcCCCcEEEeCHHHHH
Q 020625 137 VEKAKYFYIAGFFLT-VSPDSIQLVAEHAAANN--KVFMMNLSAP-----FI-CEFFKDAL-EKVLPYMDYIFGNETEAR 206 (323)
Q Consensus 137 ~~~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~d~~~~-----~~-~~~~~~~~-~~~l~~~dvl~~n~~e~~ 206 (323)
+...+++ +.|+.+. ...+.+.++++.+++.+ ..+++||.-. .| .+...+.+ +.+++++|++++|..|++
T Consensus 72 l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~ 150 (286)
T PRK05756 72 LGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHH
Confidence 3467866 5565432 22367778888777665 4577775311 11 12223333 458999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCC--------ceEEeeCCeeeEEeceeCCCCcc-cCCCCcc
Q 020625 207 TFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD--------PVVVAQDGKLKKFPVIVLPKDKL-VDTNGAG 277 (323)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~--------G~~~~~~~~~~~~~~~~~~~~~~-~d~tGAG 277 (323)
.|++....+.+++.++++++ .+.|++.++||.|.. |++++++++.++++.++ .+. +|++|||
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l------~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~v~~~GaG 221 (286)
T PRK05756 151 WLSGRPVETLEDAVAAARAL------IARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPL---VDFMRQPVGVG 221 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHH------HHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCc---cCCCCCCCChH
Confidence 99875443334566777778 667899999999876 46677777666665433 355 6999999
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhc
Q 020625 278 DAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRS 312 (323)
Q Consensus 278 Daf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~ 312 (323)
|+|.|+|+++|++|+++++|+++|++.....++..
T Consensus 222 D~f~a~~~a~l~~g~~~~~al~~A~~~~~~~i~~~ 256 (286)
T PRK05756 222 DLTSALFLARLLQGGSLEEALEHTTAAVYEVMART 256 (286)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888653
No 55
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.77 E-value=1.3e-17 Score=143.74 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=123.4
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCC-eEEEeCCc------hhHHHHHHHHH-HhhcCCCcEEEeCHHHHHHHHh
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNK-VFMMNLSA------PFICEFFKDAL-EKVLPYMDYIFGNETEARTFSK 210 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~------~~~~~~~~~~~-~~~l~~~dvl~~n~~e~~~l~~ 210 (323)
..+.+.++- ..+.+.+..+++.+++.+. ++++||.. +.+.....+.+ +.+++.+|++++|..|++.|++
T Consensus 73 ~~~ai~iG~---l~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGM---LASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECC---cCCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhC
Confidence 567777753 2267788888888888775 78899841 22222233334 4689999999999999999987
Q ss_pred hcCCCCCC-HHHHHHHHhcCCccccCCccEEEEeeCC--Cce----EEeeCCeeeEEeceeCCCCcccCCCCcchHHHHH
Q 020625 211 VQGWETDD-VEEIALKLSQWPKASEIRKRTAVITQGA--DPV----VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGG 283 (323)
Q Consensus 211 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vvit~G~--~G~----~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag 283 (323)
....+.++ ++++++.+ .+.|++.++||.|. +|. +++++++.++++.++ ...+|++|+||+|.|+
T Consensus 150 ~~~~~~~~~~~~~a~~l------~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~GaGD~f~a~ 220 (266)
T PRK06427 150 LPIADTEDEMKAAARAL------HALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPR---IPTKNTHGTGCTLSAA 220 (266)
T ss_pred CCCCCcHHHHHHHHHHH------HhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeee---ECCCCCCChHHHHHHH
Confidence 54333233 67788888 66789999999998 553 566666666666543 3678999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHhHHHHHHhhhc
Q 020625 284 FLSQLVQEKPIEECVRAGCYTSHVIIQRS 312 (323)
Q Consensus 284 ~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~ 312 (323)
|+++|++|+++++|+++|++++..++++.
T Consensus 221 l~~~l~~g~~l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 221 IAAELAKGASLLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998774
No 56
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.77 E-value=2.4e-17 Score=140.22 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=121.8
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhC-CCeEEEeCCch------hHHHHHHHH-HHhhcCCCcEEEeCHHHHHHHHh
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAAN-NKVFMMNLSAP------FICEFFKDA-LEKVLPYMDYIFGNETEARTFSK 210 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~------~~~~~~~~~-~~~~l~~~dvl~~n~~e~~~l~~ 210 (323)
..+.+.++ +. .+++.+..+.+.+++. +.++++||... .+.+...+. .+.+++++|++++|..|++.|++
T Consensus 68 ~~~~i~~G-~l--~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIG-ML--GSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEEC-CC--CCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhC
Confidence 56888874 22 3578888888888876 78899998431 112222233 35667999999999999999988
Q ss_pred hcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCc----e-EEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHH
Q 020625 211 VQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP----V-VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 285 (323)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G----~-~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~ 285 (323)
....+.++..++++.+ ...+.+.++||.|+.| . +++++++.++++.++. ..+|++|+||+|.|+|+
T Consensus 145 ~~~~~~~~~~~~~~~l------~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~GaGD~f~a~l~ 215 (242)
T cd01169 145 LEIATEEDMMKAAKAL------LALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRI---DTKNTHGTGCTLSSAIA 215 (242)
T ss_pred CCCCCHHHHHHHHHHH------HhcCCCEEEEecCCCCCCceeEEEEECCcEEEEeccee---CCCCCCChHHHHHHHHH
Confidence 5433334456677777 6678999999999875 3 5667666666665443 67999999999999999
Q ss_pred HHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 286 SQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 286 ~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
++|++|+++++|+++|++.-...+++
T Consensus 216 a~l~~g~~~~~A~~~A~~~~~~~i~~ 241 (242)
T cd01169 216 ANLAKGLSLEEAVREAKEYVTQAIRN 241 (242)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988776653
No 57
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.77 E-value=1.8e-17 Score=141.79 Aligned_cols=150 Identities=20% Similarity=0.172 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHH-hCCCeEEEeCCch--hH----HHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHH
Q 020625 153 SPDSIQLVAEHAA-ANNKVFMMNLSAP--FI----CEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 225 (323)
Q Consensus 153 ~~~~~~~~~~~~~-~~~~~~~~d~~~~--~~----~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~ 225 (323)
+.+....+++.++ ..+.++++||... .| .+...+.++++++++|++++|++|++.+++....+.++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~~~~~~~~~~~a~~ 160 (253)
T PRK12413 81 NVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKEIKTLEDMKEAAKK 160 (253)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 3456666666666 3578888997322 11 122445566789999999999999999998654444567788888
Q ss_pred HhcCCccccCCccEEEEeeCCCc-----e-EEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHH
Q 020625 226 LSQWPKASEIRKRTAVITQGADP-----V-VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 299 (323)
Q Consensus 226 l~~~~~~~~~~~~~vvit~G~~G-----~-~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~ 299 (323)
+ .+.|++.+++|.|++| . ++++++.. +.+..+ ...+|++||||+|.|+|+++|.+|+++++|++
T Consensus 161 l------~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~GaGDaf~a~~~~~l~~g~~l~ea~~ 230 (253)
T PRK12413 161 L------YDLGAKAVVIKGGNRLSQKKAIDLFYDGKEF-VILESP---VLEKNNIGAGCTFASSIASQLVKGKSPLEAVK 230 (253)
T ss_pred H------HHcCCCEEEEeCCCCCCCCcceEEEEcCCEE-EEEeec---ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 8 6678999999999864 2 34444443 334333 35789999999999999999999999999999
Q ss_pred HHhHHHHHHhhhc
Q 020625 300 AGCYTSHVIIQRS 312 (323)
Q Consensus 300 ~A~~~Aa~~~~~~ 312 (323)
+|.++....++..
T Consensus 231 ~A~~~~~~~l~~~ 243 (253)
T PRK12413 231 NSKDFVYQAIQQS 243 (253)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888663
No 58
>PRK07105 pyridoxamine kinase; Validated
Probab=99.75 E-value=2.8e-17 Score=142.93 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=117.8
Q ss_pred cccEEEEeccccccCHHHHHHHHH---HHHhCCCeEEEeCCch----hH---HHHHHHHHHhhcCCCcEEEeCHHHHHHH
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAE---HAAANNKVFMMNLSAP----FI---CEFFKDALEKVLPYMDYIFGNETEARTF 208 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~----~~---~~~~~~~~~~~l~~~dvl~~n~~e~~~l 208 (323)
..|.|.++ +. .+++.+..+.+ .+++.+.++++||... .| .+...+.++++++.+|++++|..|++.|
T Consensus 75 ~~~aik~G-~l--~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L 151 (284)
T PRK07105 75 KFDAIYSG-YL--GSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLL 151 (284)
T ss_pred ccCEEEEC-cC--CCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHH
Confidence 57888764 22 23444444444 4455678899999531 11 2334455678999999999999999999
Q ss_pred HhhcCC----CCCCHHHHHHHHhcCCccccCCccEEEEee-----CCCceEEeeCC--eeeEEeceeCCCCcccCCCCcc
Q 020625 209 SKVQGW----ETDDVEEIALKLSQWPKASEIRKRTAVITQ-----GADPVVVAQDG--KLKKFPVIVLPKDKLVDTNGAG 277 (323)
Q Consensus 209 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~vvit~-----G~~G~~~~~~~--~~~~~~~~~~~~~~~~d~tGAG 277 (323)
++.... +.++++++++.+ .+.|++.++||. |..|+++++++ ..++.+.+ . ..+|++|||
T Consensus 152 ~g~~~~~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~---~-~~~~~~GaG 221 (284)
T PRK07105 152 LDKPYLEKSYSEEEIKQLLRKL------ADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCK---Y-IPAHYPGTG 221 (284)
T ss_pred cCCCcCcCCCCHHHHHHHHHHH------HhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeec---c-cCCCcCChh
Confidence 875321 233566777777 667889999998 66788887643 34444432 2 347999999
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhcC
Q 020625 278 DAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSG 313 (323)
Q Consensus 278 Daf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~G 313 (323)
|+|.|+|+++|++|+++++|+++|+++....+++..
T Consensus 222 D~f~aa~~~~l~~g~~l~~av~~A~~~~~~~i~~~~ 257 (284)
T PRK07105 222 DIFTSVITGSLLQGDSLPIALDRAVQFIEKGIRATL 257 (284)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988653
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.75 E-value=3.9e-17 Score=141.40 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=115.3
Q ss_pred ccccEEEEeccccccCHHHHH---HHHHHHHh--CCCeEEEeCCc------hhHHHHHHHHHH-hhcCCCcEEEeCHHHH
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQ---LVAEHAAA--NNKVFMMNLSA------PFICEFFKDALE-KVLPYMDYIFGNETEA 205 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~d~~~------~~~~~~~~~~~~-~~l~~~dvl~~n~~e~ 205 (323)
.+.|.++++-.. +.+... ++++..+. .+.++++||.. .+......+.++ .+++.+|++++|..|+
T Consensus 87 ~~~d~i~~G~l~---s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea 163 (281)
T PRK08176 87 RQLRAVTTGYMG---SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFEL 163 (281)
T ss_pred ccCCEEEECCCC---CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHH
Confidence 478998885322 444444 44444332 35678899851 111122334454 5889999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCc-------eEEeeCCeeeEEeceeCCCCcccCCCCcch
Q 020625 206 RTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP-------VVVAQDGKLKKFPVIVLPKDKLVDTNGAGD 278 (323)
Q Consensus 206 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G-------~~~~~~~~~~~~~~~~~~~~~~~d~tGAGD 278 (323)
+.|++....+.++++++++++ .+.|++.++||.|..| ++++++++.+..+ .+ ...+|++|+||
T Consensus 164 ~~L~g~~~~~~~~~~~~~~~l------~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~GaGD 233 (281)
T PRK08176 164 EILTGKPCRTLDSAIAAAKSL------LSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVIS-HP---RVDTDLKGTGD 233 (281)
T ss_pred HHHhCCCCCCHHHHHHHHHHH------HhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEEe-cC---ccCCCCCChhH
Confidence 999875433334566778888 6678999999999988 5666666544333 22 24579999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 279 AFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 279 af~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
+|.|+|++++.+|+++++|+++|+..-...++.
T Consensus 234 ~faa~~~a~l~~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 234 LFCAELVSGLLKGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988777754
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.74 E-value=4.9e-17 Score=149.41 Aligned_cols=150 Identities=19% Similarity=0.289 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEeCCc------hhHHHHHHHH-HHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHH
Q 020625 153 SPDSIQLVAEHAAANNKVFMMNLSA------PFICEFFKDA-LEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 225 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~~-~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~ 225 (323)
+.+.+..+++.+++++.++++|+.. +.|.....+. .+.+++++|++++|..|++.|++....+.++++++++.
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~~ 161 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKY 161 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5688999999999999999999831 2333222233 35788999999999999999988544344467777787
Q ss_pred HhcCCccc-cCCccEEEEeeCC----Cce-EEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHH
Q 020625 226 LSQWPKAS-EIRKRTAVITQGA----DPV-VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 299 (323)
Q Consensus 226 l~~~~~~~-~~~~~~vvit~G~----~G~-~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~ 299 (323)
+ . ..|++.+++|.|. +|+ +++.++..++++.+ +++++|++||||+|.|+|+++|++|+++++|++
T Consensus 162 L------~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~---~v~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~ 232 (448)
T PRK08573 162 I------VEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAP---RVESGCTHGTGCSFSAAIAAGLAKGLDPEEAIK 232 (448)
T ss_pred H------HHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEec---CcCCCCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7 4 3688999999885 344 44566666666653 347899999999999999999999999999999
Q ss_pred HHhHHHHHHhhh
Q 020625 300 AGCYTSHVIIQR 311 (323)
Q Consensus 300 ~A~~~Aa~~~~~ 311 (323)
+|+.+....+++
T Consensus 233 ~A~~~~~~al~~ 244 (448)
T PRK08573 233 TAKKFITMAIKY 244 (448)
T ss_pred HHHHHHHHHHHH
Confidence 999999999983
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.74 E-value=1e-16 Score=138.12 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=121.1
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCC-eEEEeCCchh------HHHHHHHHHH-hhcCCCcEEEeCHHHHHHHHh
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNK-VFMMNLSAPF------ICEFFKDALE-KVLPYMDYIFGNETEARTFSK 210 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~------~~~~~~~~~~-~~l~~~dvl~~n~~e~~~l~~ 210 (323)
..+.+.++- --+.+.+..+.+.+++.+. ++++||.... ...+..+.++ .+++.+|++++|..|++.|++
T Consensus 74 ~~~aikiG~---l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTGM---LPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEECC---CCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcC
Confidence 357777742 2356788888888888764 5889986411 1122233344 488899999999999999987
Q ss_pred h-cCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCce------EEeeCCeeeEEeceeCCCCcccCCCCcchHHHHH
Q 020625 211 V-QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPV------VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGG 283 (323)
Q Consensus 211 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~------~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag 283 (323)
. ...+.++++++++.+ .+.|++.++||.|..|. +++++++.++++.++ .+..|++||||+|.|+
T Consensus 151 ~~~~~~~~~~~~aa~~l------~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~GaGD~fsaa 221 (270)
T PRK12616 151 MGEIKTVEQMKEAAKKI------HELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEM---IDTPYTHGAGCTFSAA 221 (270)
T ss_pred CCCCCCHHHHHHHHHHH------HHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeee---eCCCCCCcHHHHHHHH
Confidence 4 232334567888888 66789999999998762 556666655555433 3678999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 284 FLSQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 284 ~~~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
|+++|++|+++++|+++|..+....++.
T Consensus 222 laa~l~~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 222 VTAELAKGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988876
No 62
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.58 E-value=5.2e-14 Score=131.60 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=120.6
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCc------hhHHHHHHHHH-HhhcCCCcEEEeCHHHHHHHHh
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSA------PFICEFFKDAL-EKVLPYMDYIFGNETEARTFSK 210 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~------~~~~~~~~~~~-~~~l~~~dvl~~n~~e~~~l~~ 210 (323)
..+.+.++- ..+.+.+..+++.+++.+.+ +++||.. ........+.+ +.+++.+|++.+|..|++.|++
T Consensus 78 ~~~aik~G~---l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 78 PVDVVKTGM---LPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLG 154 (502)
T ss_pred CCCEEEECC---cCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhC
Confidence 457777642 22578888999988888774 8899842 11112233334 3688999999999999999986
Q ss_pred hc-CCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCc------eEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHH
Q 020625 211 VQ-GWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP------VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGG 283 (323)
Q Consensus 211 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G------~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag 283 (323)
.. ..+.+++.++++.+ .+.|++.++||.|..+ .++++++..++++.++ ...+|++|+||+|.|+
T Consensus 155 ~~~~~~~~~~~~~a~~l------~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~---i~~~~t~GaGD~fsaa 225 (502)
T PLN02898 155 GDPLETVADMRSAAKEL------HKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSR---IKTRNTHGTGCTLASC 225 (502)
T ss_pred CCCCCCHHHHHHHHHHH------HhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecce---eCCCCCCchhhhHHHH
Confidence 32 22234567788888 6678899999998753 2556655555555433 3678999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHhHHHHHHhhhc
Q 020625 284 FLSQLVQEKPIEECVRAGCYTSHVIIQRS 312 (323)
Q Consensus 284 ~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~ 312 (323)
|+++|.+|+++++|+++|+.+....+++.
T Consensus 226 iaa~l~~G~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 226 IAAELAKGSDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999764
No 63
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.56 E-value=1.3e-13 Score=128.90 Aligned_cols=148 Identities=17% Similarity=0.199 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEeCCc------hhHHH----HHHHHH-HhhcCCCcEEEeCHHHHHHHHhhc-CCCCCCHH
Q 020625 153 SPDSIQLVAEHAAANNKVFMMNLSA------PFICE----FFKDAL-EKVLPYMDYIFGNETEARTFSKVQ-GWETDDVE 220 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~----~~~~~~-~~~l~~~dvl~~n~~e~~~l~~~~-~~~~~~~~ 220 (323)
+.+.+..+++.++ +.++++||-. ..+.. ...+.+ +.+++.+|++++|..|++.|++.. ..+.++++
T Consensus 310 s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~ 387 (504)
T PTZ00347 310 TARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYEAR 387 (504)
T ss_pred CHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHHHH
Confidence 5778888888775 5678889732 11211 112223 368899999999999999998853 22233566
Q ss_pred HHHHHHhcCCccccCCccEEEEeeCCCc-------eEEeeC--CeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcC
Q 020625 221 EIALKLSQWPKASEIRKRTAVITQGADP-------VVVAQD--GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQE 291 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~vvit~G~~G-------~~~~~~--~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g 291 (323)
++++.+ .+.|++.++||.|..| .+++.+ ++.++++.++ +.++|++|+||+|.|+|+++|++|
T Consensus 388 ~aa~~l------~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~---i~~~~~~GaGD~fsaaiaa~la~G 458 (504)
T PTZ00347 388 AAAQAL------AQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANR---IATINTHGTGCTLASAISSFLARG 458 (504)
T ss_pred HHHHHH------HhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeee---ECCCCCCChHHHHHHHHHHHHhCC
Confidence 777888 6678999999999863 344442 3455666543 368899999999999999999999
Q ss_pred CCHHHHHHHHhHHHHHHhhh
Q 020625 292 KPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 292 ~~~~~a~~~A~~~Aa~~~~~ 311 (323)
+++++|+++|.+.-...+.+
T Consensus 459 ~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 459 YTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999998888777754
No 64
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.55 E-value=1.7e-13 Score=119.67 Aligned_cols=158 Identities=24% Similarity=0.262 Sum_probs=107.1
Q ss_pred EEEEeccccccCHHHHHHHHHHH---HhCC--CeEEEeCCc----hhH-HHHHHHHHHhhcCCCcEEEeCHHHHHHHHhh
Q 020625 142 YFYIAGFFLTVSPDSIQLVAEHA---AANN--KVFMMNLSA----PFI-CEFFKDALEKVLPYMDYIFGNETEARTFSKV 211 (323)
Q Consensus 142 ~v~i~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~d~~~----~~~-~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~ 211 (323)
.+++.|+.+ +.+.+..+++.+ ++.+ +++++||.- ..| .+...+.++.+++++|++++|.+|++.+++.
T Consensus 79 ~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~~E~~~L~g~ 156 (296)
T PTZ00344 79 TYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQFEASLLSGV 156 (296)
T ss_pred CEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCHHHHHHHhCC
Confidence 445556543 456656555554 4454 468888532 112 2335566778899999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEe---eCCCc----eEEee--C----CeeeEEeceeCCCCcccCCCCcch
Q 020625 212 QGWETDDVEEIALKLSQWPKASEIRKRTAVIT---QGADP----VVVAQ--D----GKLKKFPVIVLPKDKLVDTNGAGD 278 (323)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit---~G~~G----~~~~~--~----~~~~~~~~~~~~~~~~~d~tGAGD 278 (323)
...+.++..++++.+ .+.|++.++|| .|..| +++.. . ++.+.+.. |+.. ++++||||
T Consensus 157 ~~~~~~~~~~~~~~l------~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~-~~~~GaGD 226 (296)
T PTZ00344 157 EVKDLSDALEAIDWF------HEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKV---PYIE-GRYTGTGD 226 (296)
T ss_pred CCCCHHHHHHHHHHH------HHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEec---cccC-CCCCCchH
Confidence 432333456677777 55688999999 55555 44432 1 22344432 2223 57799999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhc
Q 020625 279 AFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRS 312 (323)
Q Consensus 279 af~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~ 312 (323)
+|.|+|++.+.+| ++++|+++|.+.-..+++..
T Consensus 227 ~f~A~~~a~l~~g-~~~~a~~~A~a~~~~~i~~~ 259 (296)
T PTZ00344 227 LFAALLLAFSHQH-PMDLAVGKAMGVLQDIIKAT 259 (296)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888 99999999999888777543
No 65
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.55 E-value=1.2e-13 Score=118.32 Aligned_cols=162 Identities=17% Similarity=0.071 Sum_probs=113.9
Q ss_pred hhhccccEEEEeccccccCH-HHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcC
Q 020625 135 ALVEKAKYFYIAGFFLTVSP-DSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQG 213 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~ 213 (323)
..+...|++++++ .+.. +.+..+++.+++++.++++|+........... . .+.+..+++.+|..|++.|++...
T Consensus 73 ~~~~~~d~v~ig~---gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~-~-~~~~~~~iltPn~~E~~~L~g~~~ 147 (254)
T cd01171 73 ELLERADAVVIGP---GLGRDEEAAEILEKALAKDKPLVLDADALNLLADEPS-L-IKRYGPVVLTPHPGEFARLLGALV 147 (254)
T ss_pred hhhccCCEEEEec---CCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChh-h-hccCCCEEECCCHHHHHHHhCCCh
Confidence 3456789999975 2333 78888888888889999999875432111101 0 245678999999999999987542
Q ss_pred CC-CCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC
Q 020625 214 WE-TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK 292 (323)
Q Consensus 214 ~~-~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~ 292 (323)
.+ .++..++++.+ .+.+.. +++..| .+.+++++++.+++... ....++++|+||+|.|.+.+.+.+|+
T Consensus 148 ~~~~~~~~~~a~~l------~~~~~~-~vvlkG-~~~~i~~~~~~~~~~~~---~~~~~~~~GaGD~lag~iaa~la~g~ 216 (254)
T cd01171 148 EEIQADRLAAAREA------AAKLGA-TVVLKG-AVTVIADPDGRVYVNPT---GNPGLATGGSGDVLAGIIAALLAQGL 216 (254)
T ss_pred hhhhhHHHHHHHHH------HHHcCc-EEEEcC-CCCEEECCCCcEEEECC---CCcccccCchHHHHHHHHHHHHHcCC
Confidence 22 12445667777 444444 555567 45666665444445433 33688999999999888888888999
Q ss_pred CHHHHHHHHhHHHHHHhhhc
Q 020625 293 PIEECVRAGCYTSHVIIQRS 312 (323)
Q Consensus 293 ~~~~a~~~A~~~Aa~~~~~~ 312 (323)
++++|+++|+.+.+++.+..
T Consensus 217 ~~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 217 SPLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 66
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.55 E-value=1.6e-13 Score=114.09 Aligned_cols=149 Identities=23% Similarity=0.284 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEeC------CchhHHHHHHHHH-HhhcCCCcEEEeCHHHHHHHHhh-cCCCCCCHHHHH
Q 020625 153 SPDSIQLVAEHAAANN-KVFMMNL------SAPFICEFFKDAL-EKVLPYMDYIFGNETEARTFSKV-QGWETDDVEEIA 223 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~~~~~d~------~~~~~~~~~~~~~-~~~l~~~dvl~~n~~e~~~l~~~-~~~~~~~~~~~~ 223 (323)
+.+.+..+.+..++++ .++++|| +.+...++..+.+ ++++|.++++.+|..|++.|++. ...+.+++++++
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~ 162 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAA 162 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHH
Confidence 5789999999999998 6788998 2233334444444 48999999999999999999994 555667888888
Q ss_pred HHHhcCCccccCCccEEEEeeCCCc----eEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHH
Q 020625 224 LKLSQWPKASEIRKRTAVITQGADP----VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 299 (323)
Q Consensus 224 ~~l~~~~~~~~~~~~~vvit~G~~G----~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~ 299 (323)
+.+ .+.|++.++|+-|... -++|+++..+.+..+ ..+-.++.|+|++|.|++.+.|.+|.++++|++
T Consensus 163 ~~i------~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~---ri~t~~tHGTGCTlSaAIaa~LA~G~~l~~AV~ 233 (263)
T COG0351 163 KLL------HELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAP---RIPTKNTHGTGCTLSAAIAANLAKGLSLEEAVK 233 (263)
T ss_pred HHH------HHhCCCEEEEcCCCCCCCceeEEEcCCceEEEecc---ccCCCCCCCccHHHHHHHHHHHHcCCCHHHHHH
Confidence 888 6789999999987744 245666666666543 346788999999999999999999999999999
Q ss_pred HHhHHHHHHhh
Q 020625 300 AGCYTSHVIIQ 310 (323)
Q Consensus 300 ~A~~~Aa~~~~ 310 (323)
.|-..-..+++
T Consensus 234 ~Ak~fv~~AI~ 244 (263)
T COG0351 234 KAKEFVTRAIR 244 (263)
T ss_pred HHHHHHHHHHh
Confidence 99999888887
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.54 E-value=1.6e-13 Score=116.57 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=116.1
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch------hHHHHHHHHHHh-hcCCCcEEEeCHHHHHHHHhh
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP------FICEFFKDALEK-VLPYMDYIFGNETEARTFSKV 211 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~~~~~~-~l~~~dvl~~n~~e~~~l~~~ 211 (323)
..+.+.++- --+.+.+..+.+..++.+.++++||--. ...++..+.+++ +++.+|++.+|..|++.|++.
T Consensus 60 ~~~aikiG~---l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~ 136 (246)
T PF08543_consen 60 KFDAIKIGY---LGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGR 136 (246)
T ss_dssp C-SEEEE-S----SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS
T ss_pred cccEEEEcc---cCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCC
Confidence 678888753 2356777888888877778888988321 123344555554 999999999999999999985
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCC----c---eEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHH
Q 020625 212 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD----P---VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGF 284 (323)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~----G---~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~ 284 (323)
...+.+++.++++.+ .+.|++.|+||-+.. + -+++++++.+.+..+.. ...+..|.||+|.|.+
T Consensus 137 ~i~~~~~~~~~~~~l------~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~GTGd~fss~l 207 (246)
T PF08543_consen 137 EINSEEDIEEAAKAL------LALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRI---PTGSFHGTGDLFSSAL 207 (246)
T ss_dssp --SSHHHHHHHHHHH------HHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEE---CTSGCTTHHHHHHHHH
T ss_pred CCCChHhHHHHHHHH------HHhCCceEEEeeeccccccccccceeeeccceeecceeEE---cCCCCCCchhHHHHHH
Confidence 555556788888998 678999999998763 2 23456666666665443 3468899999999999
Q ss_pred HHHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 285 LSQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 285 ~~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
++.|.+|+++++|++.|...-...+.+
T Consensus 208 aa~l~~g~~l~~Av~~A~~~v~~~i~~ 234 (246)
T PF08543_consen 208 AAFLAKGYSLEEAVEKAKNFVRRAIKN 234 (246)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877763
No 68
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.51 E-value=2.8e-13 Score=118.18 Aligned_cols=247 Identities=18% Similarity=0.228 Sum_probs=162.6
Q ss_pred ceEEEeCCceeeeEeecChhHHhhHHHHhhcCCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHH
Q 020625 5 GILLGMGNPLLDISSVVDDDFLNKYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKL 84 (323)
Q Consensus 5 ~~i~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~ 84 (323)
++-+++|...+|....++. --+.+............||.+.|.|-++++ +| .++.+++.+|+|..+++.+.
T Consensus 341 ~KPv~vGa~i~D~~~k~d~--d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~-lg--~d~~liSavG~d~n~~~~~~---- 411 (614)
T KOG3009|consen 341 RKPVSVGATIVDFEAKTDE--DVKDDGGSYNGQVVQAMGGVARNHADALAR-LG--CDSVLISAVGDDNNGHFFRQ---- 411 (614)
T ss_pred cCceeecceEEEeEEeecc--cccccCCcccchhhhhccchhhhHHHHHHH-hc--CCeeEEEEeccCCcchhhhh----
Confidence 4559999999999999887 334444455556778899999999999997 56 99999999999931111100
Q ss_pred cCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHH
Q 020625 85 AGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHA 164 (323)
Q Consensus 85 ~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~ 164 (323)
.+.+-++ .-+.+..++++++++ ++++.....+++ +
T Consensus 412 --------------------------------------~~~~~~e---~~~dl~~a~~I~~Ds---NiS~~~Ma~il~-a 446 (614)
T KOG3009|consen 412 --------------------------------------NSHKIVE---SNEDLLSADFILLDS---NISVPVMARILE-A 446 (614)
T ss_pred --------------------------------------hhhhhhh---hhhhhhcCCEEEEcC---CCCHHHHHHHHH-h
Confidence 0000011 012233899999986 688888889998 8
Q ss_pred HhCCCeEEEeCCchhHHHHHHHHHHhhcC-CCcEEEeCHHHHHHHHhhcC--CCC------CCHHHHHHHHhcCCccccC
Q 020625 165 AANNKVFMMNLSAPFICEFFKDALEKVLP-YMDYIFGNETEARTFSKVQG--WET------DDVEEIALKLSQWPKASEI 235 (323)
Q Consensus 165 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~-~~dvl~~n~~e~~~l~~~~~--~~~------~~~~~~~~~l~~~~~~~~~ 235 (323)
+.+..++.|+|-+... ....++.++. .++.+.+|..|+-......- ++. +...+.++.... ....
T Consensus 447 k~~k~~V~fEPTd~~k---~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~---k~~~ 520 (614)
T KOG3009|consen 447 KKHKKQVWFEPTDIDK---VKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKT---KLLL 520 (614)
T ss_pred hhccCceEecCCCchh---hhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHH---Hhhc
Confidence 8999999999976432 1222333332 46888899999843322111 111 112222222211 1334
Q ss_pred CccEEEEeeCCCceEEeeCC--eeeEEeceeCC--CCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 236 RKRTAVITQGADPVVVAQDG--KLKKFPVIVLP--KDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 236 ~~~~vvit~G~~G~~~~~~~--~~~~~~~~~~~--~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
....+|+|+..+|+++.-++ ...++...+.+ .-++++..||||+|.+|++.+++++.++.+++.-+..++....+.
T Consensus 521 ~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~v~es~~gg~~~~ralls~ 600 (614)
T KOG3009|consen 521 NTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHNKTVVESLQGGQECARALLST 600 (614)
T ss_pred ccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcCcchHhhccccHHHHHHHHhc
Confidence 56789999999999864322 22222222212 347889999999999999999999999999999996665554443
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.49 E-value=5.3e-13 Score=129.97 Aligned_cols=160 Identities=13% Similarity=0.175 Sum_probs=116.8
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHhC-CCeEEEeCCc------hhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhc
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAAN-NKVFMMNLSA------PFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQ 212 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~------~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~ 212 (323)
.+.+-++- .-+.+.+..+++.+++. +.++++||.. ..+.+...+.++.+++.+|++.+|..|++.|++..
T Consensus 311 ~~aiKiGm---L~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~ 387 (755)
T PRK09517 311 VDAVKLGM---LGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEA 387 (755)
T ss_pred CCEEEECC---CCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCC
Confidence 46666642 23567888888888875 4668899742 12223334446679999999999999999998742
Q ss_pred -CCCCCCHHHHHHHHhcCCccccCCccEEEEeeCC------CceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHH
Q 020625 213 -GWETDDVEEIALKLSQWPKASEIRKRTAVITQGA------DPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 285 (323)
Q Consensus 213 -~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~------~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~ 285 (323)
..+.+++.++++.+ .+.+...++||.|. .++++..++..++++.+ +++.+|++|+||+|.|+|+
T Consensus 388 ~~~~~~d~~~aa~~L------~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~---~v~~~~t~GaGDtfsaaia 458 (755)
T PRK09517 388 PAITMDEAIAQARGF------ARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENP---RVNTTNSHGTGCSLSAALA 458 (755)
T ss_pred CCCCHHHHHHHHHHH------HHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeec---ccCCCCCcChHHHHHHHHH
Confidence 12233566667777 44333479999883 46666655556666644 3478999999999999999
Q ss_pred HHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 286 SQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 286 ~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
++|++|+++++|+++|+..-...+.+
T Consensus 459 a~La~G~sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 459 TLIAAGESVEKALEWATRWLNEALRH 484 (755)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888865
No 70
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.49 E-value=1.2e-12 Score=110.61 Aligned_cols=167 Identities=15% Similarity=0.083 Sum_probs=114.3
Q ss_pred hhhhhccccEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEEeCHHHHHHHH
Q 020625 133 NWALVEKAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEARTFS 209 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~e~~~l~ 209 (323)
..+.++.+|++++..-.+ +...+.+..+++.+++.+.++++|+....+.....+....++. .+|++.+|..|+..++
T Consensus 43 ~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~ 122 (242)
T cd01170 43 VEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALA 122 (242)
T ss_pred HHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHh
Confidence 456678899999863111 1112455566667888899999999632221111123345554 4999999999999998
Q ss_pred hhcCCC---------CCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHH
Q 020625 210 KVQGWE---------TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAF 280 (323)
Q Consensus 210 ~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf 280 (323)
+..... .+++.++++.+ .+.+...+++| |.... ++++++.++++..+. .+.++.|+||+|
T Consensus 123 g~~~~~~~~~~~~~~~~~~~~aa~~l------~~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~~---~~~~v~GtGdtL 191 (242)
T cd01170 123 GLTGLGKGVDSSSSDEEDALELAKAL------ARKYGAVVVVT-GEVDY-ITDGERVVVVKNGHP---LLTKITGTGCLL 191 (242)
T ss_pred CCCCCcCcccCCCcchHHHHHHHHHH------HHHhCCEEEEE-CCCcE-EEECCEEEEEeCCCc---cccCCCchHHHH
Confidence 854321 23567777777 33344468888 66664 556677777764322 446678999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHhHHHHHHhh
Q 020625 281 VGGFLSQLVQEKPIEECVRAGCYTSHVIIQ 310 (323)
Q Consensus 281 ~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~ 310 (323)
.|.+...|.+|.++.+|+..|...-+.++.
T Consensus 192 a~aiAa~LA~g~~~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 192 GAVIAAFLAVGDDPLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877766664
No 71
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.47 E-value=1e-12 Score=123.51 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=109.3
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHhCC-CeEEEeCCc------hhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhc
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAANN-KVFMMNLSA------PFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQ 212 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~------~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~ 212 (323)
.+.+.++- .-+.+.+..+.+..++.. .++++||.- ..+.+...+.++++++.+|++.+|..|++.|++..
T Consensus 99 ~~aikiG~---l~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~ 175 (530)
T PRK14713 99 VDAVKIGM---LGDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELAVLLGEP 175 (530)
T ss_pred CCEEEECC---cCCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHHHHhCCC
Confidence 56677642 124566666666665543 347888832 22334455667789999999999999999998743
Q ss_pred C-CCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCc-----eEEe-eCCeeeEEeceeCCCCcccCCCCcchHHHHHHH
Q 020625 213 G-WETDDVEEIALKLSQWPKASEIRKRTAVITQGADP-----VVVA-QDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 285 (323)
Q Consensus 213 ~-~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G-----~~~~-~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~ 285 (323)
. .+.+++.++++.+ ...+.+.++||.|..+ ..++ .+++.++++.. +++.+|++|+||+|.|+|+
T Consensus 176 ~~~~~~d~~~aa~~L------~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~---~v~~~~t~GaGD~fsaala 246 (530)
T PRK14713 176 PATTWEEALAQARRL------AAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGP---RVDTRNTHGTGCSLSSALA 246 (530)
T ss_pred CCCCHHHHHHHHHHH------HHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeee---eeCCCCCCcHHHHHHHHHH
Confidence 2 1234455667777 4334468999988642 3344 34445666543 3467899999999999999
Q ss_pred HHhhcCCCHHHHHHHHhHHHHHHh
Q 020625 286 SQLVQEKPIEECVRAGCYTSHVII 309 (323)
Q Consensus 286 ~~l~~g~~~~~a~~~A~~~Aa~~~ 309 (323)
++|++|+++++|+++|+..-...+
T Consensus 247 a~La~G~~l~eAv~~A~~~v~~~i 270 (530)
T PRK14713 247 TRLGRGGDWAAALRWATAWLHGAI 270 (530)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998544444
No 72
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.42 E-value=1.3e-11 Score=106.65 Aligned_cols=161 Identities=16% Similarity=0.084 Sum_probs=110.9
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCC
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 214 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~ 214 (323)
+.+...|++++++-. .+.+.+..+++.+++.+.++++|+....+ .+.........+++.+|..|++.|++....
T Consensus 88 ~~~~~~davvig~Gl--~~~~~~~~l~~~~~~~~~pvVlDa~g~~l----~~~~~~~~~~~~vItPN~~El~~L~g~~~~ 161 (272)
T TIGR00196 88 ELLERYDVVVIGPGL--GQDPSFKKAVEEVLELDKPVVLDADALNL----LTYDKPKREGEVILTPHPGEFKRLLGLVNE 161 (272)
T ss_pred hhhccCCEEEEcCCC--CCCHHHHHHHHHHHhcCCCEEEEhHHHHH----HhhcccccCCCEEECCCHHHHHHHhCCchh
Confidence 445788999997632 12344778888888889999999865432 111111134689999999999999885443
Q ss_pred CCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCH
Q 020625 215 ETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPI 294 (323)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~ 294 (323)
+.++..++++++ .+. ...++++.|..++++..++..+..+ . +....+++|+||++.|.+.+.+.+|.++
T Consensus 162 ~~~~~~~aa~~l------~~~-~~~vVv~kG~~~~i~~~~~~~~~~~-~---~~~~~~~~GaGD~lag~iaa~la~g~~~ 230 (272)
T TIGR00196 162 IQGDRLEAAQDI------AQK-LQAVVVLKGAADVIAAPDGDLWINK-T---GNAALAKGGTGDVLAGLIGGLLAQNLDP 230 (272)
T ss_pred hhhhHHHHHHHH------HHH-hCCEEEEcCCCCEEEcCCCeEEEEC-C---CCCccCCCCchHHHHHHHHHHHhCCCCH
Confidence 445677777777 333 2347778899998765444444433 2 2356889999999666666666699999
Q ss_pred HHHHHHH---hHHHHHHhhhc
Q 020625 295 EECVRAG---CYTSHVIIQRS 312 (323)
Q Consensus 295 ~~a~~~A---~~~Aa~~~~~~ 312 (323)
.+|+..| +..|+..+.+.
T Consensus 231 ~~A~~~a~~~~~~a~~~~~~~ 251 (272)
T TIGR00196 231 FDAACNAAFAHGLAGDLALKN 251 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 9999777 77777766443
No 73
>PLN02978 pyridoxal kinase
Probab=99.41 E-value=7.5e-12 Score=109.69 Aligned_cols=162 Identities=13% Similarity=0.105 Sum_probs=105.5
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHh--CCCeEEEeCCch----hH-HHHHHHHHH-hhcCCCcEEEeCHHHHHHHHhh
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAA--NNKVFMMNLSAP----FI-CEFFKDALE-KVLPYMDYIFGNETEARTFSKV 211 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~----~~-~~~~~~~~~-~~l~~~dvl~~n~~e~~~l~~~ 211 (323)
.+.+.++-....-..+.+.++++.+++ .+..+++||... .+ .+...+.++ .+++.+|++++|..|++.|++.
T Consensus 87 ~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~ 166 (308)
T PLN02978 87 YTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTGI 166 (308)
T ss_pred cCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhCC
Confidence 566665421111112456666676665 346688888521 11 122344454 5899999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCC-CceEE-ee--C------CeeeEEeceeCCCCcccCCCCcchHHH
Q 020625 212 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGA-DPVVV-AQ--D------GKLKKFPVIVLPKDKLVDTNGAGDAFV 281 (323)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~-~G~~~-~~--~------~~~~~~~~~~~~~~~~~d~tGAGDaf~ 281 (323)
...+.+++.++++.+ ...|++.++||.+. .|... .. . ++.+++..+.. ... ++|+||+|.
T Consensus 167 ~~~~~~~~~~a~~~l------~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~-~~GtGD~fs 236 (308)
T PLN02978 167 RIVTEEDAREACAIL------HAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKI---PAY-FTGTGDLMA 236 (308)
T ss_pred CCCCHHHHHHHHHHH------HHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCC---CCC-CCCchHHHH
Confidence 332233566777777 56788999987644 34332 11 1 23445543332 333 589999999
Q ss_pred HHHHHHhhcC-CCHHHHHHHHhHHHHHHhhh
Q 020625 282 GGFLSQLVQE-KPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 282 ag~~~~l~~g-~~~~~a~~~A~~~Aa~~~~~ 311 (323)
|.+++.+.+| .++++|+++|...-...++.
T Consensus 237 A~laa~l~~g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 237 ALLLGWSHKYPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 9888888888 79999999998887766654
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.22 E-value=2.3e-10 Score=95.97 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=111.3
Q ss_pred hhccccEEEEeccccccCH---HHHHHHHHHHHhCCCe--EEEeCCc-----hhHHHHHHHHH-HhhcCCCcEEEeCHHH
Q 020625 136 LVEKAKYFYIAGFFLTVSP---DSIQLVAEHAAANNKV--FMMNLSA-----PFICEFFKDAL-EKVLPYMDYIFGNETE 204 (323)
Q Consensus 136 ~~~~~~~v~i~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~d~~~-----~~~~~~~~~~~-~~~l~~~dvl~~n~~e 204 (323)
.+..+|.|+. ||.. +. +.+..+++..|+.+.. ..+||-. -....+..+.+ +++++.+|++.+|.-|
T Consensus 70 ~~~~~davlt-GYlg--s~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fE 146 (281)
T COG2240 70 KLGECDAVLT-GYLG--SAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFE 146 (281)
T ss_pred cccccCEEEE-ccCC--CHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHH
Confidence 4667888775 4432 33 3455566666655433 6667621 11122334434 3799999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCC-----ceEEeeCCe---eeEEeceeCCCCcccCCCCc
Q 020625 205 ARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD-----PVVVAQDGK---LKKFPVIVLPKDKLVDTNGA 276 (323)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~-----G~~~~~~~~---~~~~~~~~~~~~~~~d~tGA 276 (323)
++.|++....+.++..++++.+ ...|++.++||.-.. |.+++.... ..++. +.+ ..+++|.
T Consensus 147 Le~Ltg~~~~~~~da~~aa~~L------~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v----~~~~~Gt 215 (281)
T COG2240 147 LEILTGKPLNTLDDAVKAARKL------GADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLV----PFIPNGT 215 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHH------hhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcC----CCCCCCc
Confidence 9999998766667788888888 667899999995433 445544332 22221 122 3459999
Q ss_pred chHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhh
Q 020625 277 GDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQ 310 (323)
Q Consensus 277 GDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~ 310 (323)
||.|.|-|++.+++|.+.++|+..+...-...++
T Consensus 216 GDL~sallla~lL~g~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 216 GDLFSALLLARLLEGLSLTQALERATAAVYEVLQ 249 (281)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887666654
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.22 E-value=4.6e-10 Score=97.54 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=107.6
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHhCC------CeEEEeCCc------hhHH-HHHHHH-HHhhcCCCcEEEeCHHHH
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAANN------KVFMMNLSA------PFIC-EFFKDA-LEKVLPYMDYIFGNETEA 205 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~~------~~~~-~~~~~~-~~~~l~~~dvl~~n~~e~ 205 (323)
.+.+=++ +.-+.+.+..+.+..++++ .++++||-- .... ....+. .+.+++.++++.+|..|+
T Consensus 74 i~aIKiG---mL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea 150 (321)
T PTZ00493 74 IDVVKLG---VLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYEC 150 (321)
T ss_pred CCEEEEC---CcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHH
Confidence 4666654 1225677777777776542 248888831 1112 122232 356999999999999999
Q ss_pred HHHHhh----cCCCCCCHHHHHHHHhcCCcccc-CCccEEEEeeCCCc----------e--EEeeC--------------
Q 020625 206 RTFSKV----QGWETDDVEEIALKLSQWPKASE-IRKRTAVITQGADP----------V--VVAQD-------------- 254 (323)
Q Consensus 206 ~~l~~~----~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vvit~G~~G----------~--~~~~~-------------- 254 (323)
+.|.+. ...+.++++++++.+ .. .|++.|+||-|... + +++.+
T Consensus 151 ~~L~g~~~~~~~~~~~~~~~aA~~l------~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~ 224 (321)
T PTZ00493 151 KVILEALDCQMDLSKANMTELCKLV------TEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQID 224 (321)
T ss_pred HHHhCCCcccCCCCHHHHHHHHHHH------HHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccc
Confidence 999871 112344677888888 44 58999999977632 1 23321
Q ss_pred -C------eeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhh
Q 020625 255 -G------KLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 311 (323)
Q Consensus 255 -~------~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~ 311 (323)
+ +.+.+.. +.....++.|.||+|.+++++.|++|+++++|++.|...-..++..
T Consensus 225 ~~~~~~~~~~~~~~~---~ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 225 AGGVTYLYDVYKLRS---KRKPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred cccccccceEEEEEe---cccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1223332 3334467899999999999999999999999999999888777765
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.12 E-value=3.2e-09 Score=90.99 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=107.0
Q ss_pred hhhhhccccEEEEeccccccCHHH---HHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEEeCHHHHHH
Q 020625 133 NWALVEKAKYFYIAGFFLTVSPDS---IQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEART 207 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~e~~~ 207 (323)
..+....++.+++.. . ....+. +..+++.++++++++++|+..........+..+.+++ ..+++.+|..|+..
T Consensus 48 ~~~~~~~~~alvi~~-G-~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~ 125 (263)
T PRK09355 48 AEEMAKIAGALVINI-G-TLTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAA 125 (263)
T ss_pred HHHHHHhcCceEEeC-C-CCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHH
Confidence 445567888888853 2 123332 4455566788899999999653221112222333443 67999999999999
Q ss_pred HHhhcC----CC----CCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchH
Q 020625 208 FSKVQG----WE----TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDA 279 (323)
Q Consensus 208 l~~~~~----~~----~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDa 279 (323)
|++... .+ .++..+.++.+ .......+++| |..- +++++++.+.+.... ....+.+|+||+
T Consensus 126 L~g~~~~~~~vd~~~~~~~~~~~a~~l------a~~~~~~Vvvk-G~~d-~I~~~~~~~~~~~g~---~~~~~v~GtGc~ 194 (263)
T PRK09355 126 LAGEAAETKGVDSTDGSADAVEIAKAA------AKKYGTVVVVT-GEVD-YITDGERVVSVHNGH---PLMTKVTGTGCL 194 (263)
T ss_pred HhCCCcccCCcCCCCCHHHHHHHHHHH------HHHhCCEEEEE-CCCc-EEEeCCEEEEEeCCC---cccCCcccccHH
Confidence 987532 11 12456677777 44444568888 4443 445566665555211 145566999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhHHHHHHh
Q 020625 280 FVGGFLSQLVQEKPIEECVRAGCYTSHVII 309 (323)
Q Consensus 280 f~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~ 309 (323)
+.|.+...|..|.++.+|+..|...-+.+.
T Consensus 195 L~~~iaa~lA~g~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 195 LSAVVAAFAAVEKDYLEAAAAACAVYGIAG 224 (263)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887665554
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.96 E-value=2.4e-08 Score=84.88 Aligned_cols=164 Identities=14% Similarity=0.071 Sum_probs=104.6
Q ss_pred hhhhhccccEEEEeccccccCH---HHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEEeCHHHHHH
Q 020625 133 NWALVEKAKYFYIAGFFLTVSP---DSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEART 207 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~e~~~ 207 (323)
..+.+..++.+.+..-. ... +.+..+++.++++++++++||..........+..+.+++ ..+++.+|..|++.
T Consensus 43 ~~~~~~~~~al~ik~G~--l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~ 120 (249)
T TIGR00694 43 VAELAKIAGALVINIGT--LDKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIAS 120 (249)
T ss_pred HHHHHHHcCceEEeCCC--CCHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHH
Confidence 44556778888876422 233 345555666777889999999643322212233345665 47999999999999
Q ss_pred HHhhc----CCC----CCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchH
Q 020625 208 FSKVQ----GWE----TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDA 279 (323)
Q Consensus 208 l~~~~----~~~----~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDa 279 (323)
|++.. +.+ .++..++++.+ .......+++| |..- +++++++.+.+.... + ..-..+|.||+
T Consensus 121 L~g~~~~~~gvd~~~~~~d~~~~a~~l------a~~~~~~Vllk-G~~D-~i~~~~~~~~~~~g~-~--~~~~~~GtGc~ 189 (249)
T TIGR00694 121 LAGETGLMKGVDSGEGAADAIRAAQQA------AQKYGTVVVIT-GEVD-YVSDGTSVYTIHNGT-E--LLGKITGSGCL 189 (249)
T ss_pred HhCCCCCCCCcCCccchHHHHHHHHHH------HHHhCCEEEEE-CCCc-EEEeCCEEEEECCCC-h--HHhCCccchHH
Confidence 98743 211 23456677777 33333467776 4433 455666655543211 1 12224799999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhHHHHHHh
Q 020625 280 FVGGFLSQLVQEKPIEECVRAGCYTSHVII 309 (323)
Q Consensus 280 f~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~ 309 (323)
+.+.+.+.|..|.++.+|+..|...-..+.
T Consensus 190 LssaIaa~LA~g~~~~~A~~~A~~~~~~a~ 219 (249)
T TIGR00694 190 LGSVVAAFCAVEEDPLDAAISACLLYKIAG 219 (249)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875544444
No 78
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.49 E-value=2e-06 Score=75.56 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=108.6
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHhCCC-eEEEeCC-----c-hhHH-HHHHHHHHhhcCCCcEEEeCHHHHHHHHhh
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAANNK-VFMMNLS-----A-PFIC-EFFKDALEKVLPYMDYIFGNETEARTFSKV 211 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~-----~-~~~~-~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~ 211 (323)
++++=.+ +.-+++...-+.+.+++.++ ++++|+- . .... +...-..+++++++|++.+|..|+-.|.+.
T Consensus 93 C~VvKTG---ML~~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~ 169 (523)
T KOG2598|consen 93 CDVVKTG---MLPSPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKK 169 (523)
T ss_pred ccEEeec---CcCchHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhh
Confidence 4555543 11234444444455555554 3777771 1 1111 123344678999999999999999999874
Q ss_pred cCCC------CCCHHHHHHHHhcCCccccCCccEEEEeeCCCc----------------e-EEeeCCeeeEEeceeCCCC
Q 020625 212 QGWE------TDDVEEIALKLSQWPKASEIRKRTAVITQGADP----------------V-VVAQDGKLKKFPVIVLPKD 268 (323)
Q Consensus 212 ~~~~------~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G----------------~-~~~~~~~~~~~~~~~~~~~ 268 (323)
...+ ..+++..++.+ .+.|+|.++++.|.-. + ++|++.+++.++.+ ..
T Consensus 170 ~~~~~~~i~~v~di~~~~~~i------hk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~---~~ 240 (523)
T KOG2598|consen 170 EKREISKIQSVFDIAKDAAKI------HKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSP---YL 240 (523)
T ss_pred cccCCcccccHHHHHHHHHHH------HhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEeccc---cc
Confidence 3222 23456667777 7789999999976522 1 24566666666543 34
Q ss_pred cccCCCCcchHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHhhhc
Q 020625 269 KLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRS 312 (323)
Q Consensus 269 ~~~d~tGAGDaf~ag~~~~l~~g~~~~~a~~~A~~~Aa~~~~~~ 312 (323)
.-..+.|.|-+..++++..|++|.++.+|++.|...--.+++..
T Consensus 241 ~t~~tHGtgCtLaSAIASnLA~g~sl~qAv~~ai~yvq~Ai~~s 284 (523)
T KOG2598|consen 241 ATKHTHGTGCTLASAIASNLARGYSLLQAVQGAIEYVQNAIAIS 284 (523)
T ss_pred ccccccCccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999999999999999999987766666543
No 79
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.46 E-value=2.6e-06 Score=70.40 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=97.2
Q ss_pred ccccEEEEeccccccC-HHHHHHHHHHHHhCCC--eEEEeCC-----chhHHHHHHHHHHhhc-CCCcEEEeCHHHHHHH
Q 020625 138 EKAKYFYIAGFFLTVS-PDSIQLVAEHAAANNK--VFMMNLS-----APFICEFFKDALEKVL-PYMDYIFGNETEARTF 208 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~d~~-----~~~~~~~~~~~~~~~l-~~~dvl~~n~~e~~~l 208 (323)
...+.+. +||.++.+ ...+..+....|+.+. ..++||- .....++.....++++ +.+|++.+|.-|++.|
T Consensus 80 ~~Y~~vL-TGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiL 158 (308)
T KOG2599|consen 80 NKYDAVL-TGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEIL 158 (308)
T ss_pred cccceee-eeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhh
Confidence 3456554 56665443 2455666666666553 3566762 1122233444444544 5699999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCC----ce-EE---eeCC-eeeEEeceeCCCCcccCCCCcchH
Q 020625 209 SKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD----PV-VV---AQDG-KLKKFPVIVLPKDKLVDTNGAGDA 279 (323)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~----G~-~~---~~~~-~~~~~~~~~~~~~~~~d~tGAGDa 279 (323)
+|....+.++..++.+++ +..+++.+|||...- |. ++ ++.+ +.+++. +|.+ .---||.||.
T Consensus 159 tg~~I~t~eda~~a~~~l------hq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~---ipki-~~~FtGTGDL 228 (308)
T KOG2599|consen 159 TGMEIRTEEDAKRAVEKL------HQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYL---IPKI-DGVFTGTGDL 228 (308)
T ss_pred cCCeeccHHHHHHHHHHH------HHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEE---eccc-ceEEecccHH
Confidence 998887788899999999 667899999996443 31 22 1222 333333 2211 1224799999
Q ss_pred HHHHHHHHhhcC---CCHHHHHHHHhHH
Q 020625 280 FVGGFLSQLVQE---KPIEECVRAGCYT 304 (323)
Q Consensus 280 f~ag~~~~l~~g---~~~~~a~~~A~~~ 304 (323)
|.|-+++-+..- .++..|++.+...
T Consensus 229 fsaLLla~~~~~~~~~~l~~a~e~~ls~ 256 (308)
T KOG2599|consen 229 FSALLLAWLHESPDNDDLSKAVEQVLSS 256 (308)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 998888777665 4566666655443
No 80
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.97 E-value=0.00063 Score=57.09 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=98.1
Q ss_pred hhhhhccccEEEEeccccccCH---HHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhc--CCCcEEEeCHHHHHH
Q 020625 133 NWALVEKAKYFYIAGFFLTVSP---DSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVL--PYMDYIFGNETEART 207 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l--~~~dvl~~n~~e~~~ 207 (323)
..+..+.++.++++=- .+++ +......+.+++.++|+++||-..-..+...+..++++ .+.++++.|..|...
T Consensus 43 ~~e~~~~a~al~iNiG--Tl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~a 120 (246)
T PF02110_consen 43 VEEFASIADALVINIG--TLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAA 120 (246)
T ss_dssp HHHHHHCTSEEEEEST--TSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHH
T ss_pred HHHHHHHcCEEEEECC--CCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHH
Confidence 4566677888888632 2333 45667778888999999999954333333455567777 478999999999999
Q ss_pred HHhhc----CCCCC----CHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchH
Q 020625 208 FSKVQ----GWETD----DVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDA 279 (323)
Q Consensus 208 l~~~~----~~~~~----~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDa 279 (323)
|.+.. |.+.. +..+.++.+. .+-...+++| |+.-.+ .++.+.+.++.-. .-.-.-||.|+.
T Consensus 121 Lag~~~~~kGVDs~~~~~~~~~~a~~lA------~k~~~vVvvT-G~~D~I-sdg~~~~~i~nG~---~~l~~itGtGC~ 189 (246)
T PF02110_consen 121 LAGEDSKAKGVDSGDSDEDAIEAAKQLA------QKYNCVVVVT-GEVDYI-SDGNRVYRIPNGS---PLLSKITGTGCM 189 (246)
T ss_dssp HHTCCCCSCSSSSSCGSHHHHHHHHHHH------HHTTSEEEEE-SSSEEE-EESSCEEEECSSS---GGGGGSTTHHHH
T ss_pred HhCcCCCCCCcCcCCcchHHHHHHHHHH------HhcCCEEEEe-cCCcEE-ECCCeEEEeCCCC---hHhcceeccchH
Confidence 98753 22221 1346666663 2223345555 655544 3566666654321 145567999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHhHH
Q 020625 280 FVGGFLSQLVQEKPIEECVRAGCYT 304 (323)
Q Consensus 280 f~ag~~~~l~~g~~~~~a~~~A~~~ 304 (323)
..+-+.+.+.-..++.++...|..+
T Consensus 190 lgaliaaf~av~~d~~~aa~~a~~~ 214 (246)
T PF02110_consen 190 LGALIAAFLAVAEDPLEAAVAAVAL 214 (246)
T ss_dssp HHHHHHHHHCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHH
Confidence 8887777777767776666555443
No 81
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.94 E-value=0.0015 Score=59.69 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=48.4
Q ss_pred cccEEEEeccccccC--------H---HHHHHHHHHHHh--CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHH
Q 020625 139 KAKYFYIAGFFLTVS--------P---DSIQLVAEHAAA--NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEA 205 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~--------~---~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~ 205 (323)
.+|.++++|++..-. . +-+.+.++..++ .++++-+.+.+..-.......+..+++.+|.+=+|++|+
T Consensus 222 ~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~EL 301 (463)
T PRK03979 222 MVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETEI 301 (463)
T ss_pred CCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHHH
Confidence 499999999984322 1 122333333433 346676776543322334455668899999999999999
Q ss_pred HHHHhhcCC
Q 020625 206 RTFSKVQGW 214 (323)
Q Consensus 206 ~~l~~~~~~ 214 (323)
..+....+.
T Consensus 302 a~l~~~lg~ 310 (463)
T PRK03979 302 ANILNVLGY 310 (463)
T ss_pred HHHHHHhcC
Confidence 988766554
No 82
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.86 E-value=0.00043 Score=58.49 Aligned_cols=159 Identities=18% Similarity=0.102 Sum_probs=98.0
Q ss_pred hhhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcC
Q 020625 134 WALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQG 213 (323)
Q Consensus 134 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~ 213 (323)
.+.+++.|.+.+++ .+.... ...++++...+...++++|-..-... .........--|+.++..|+..|++...
T Consensus 62 ~~~~~~~~av~iGP-Glg~~~-~~~~~~~~~~~~~~p~VlDADaL~~l----~~~~~~~~~~~IlTPH~gE~~rL~~~~~ 135 (242)
T PF01256_consen 62 LELLEKADAVVIGP-GLGRDE-ETEELLEELLESDKPLVLDADALNLL----AENPKKRNAPVILTPHPGEFARLLGKSV 135 (242)
T ss_dssp HHHHCH-SEEEE-T-T-SSSH-HHHHHHHHHHHHCSTEEEECHHHHCH----HHCCCCSSSCEEEE-BHHHHHHHHTTTC
T ss_pred HhhhccCCEEEeec-CCCCch-hhHHHHHHHHhhcceEEEehHHHHHH----HhccccCCCCEEECCCHHHHHHHhCCcc
Confidence 34577899999975 233333 33445555555666788998643321 1000223445566699999999998654
Q ss_pred CCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCC
Q 020625 214 WETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP 293 (323)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~ 293 (323)
...++..+.++.+. ...+ . +++-.|..-.+...+++.+..+.-. .-.-+-|.||.+++-+..-+.++.+
T Consensus 136 ~~~~~~~~~a~~~a-----~~~~-~-~vvLKG~~t~I~~p~~~~~~n~~gn----~~la~gGsGDvLaGii~~llaq~~~ 204 (242)
T PF01256_consen 136 EIQEDRIEAAREFA-----KEYG-A-VVVLKGAVTIIASPGGRVYVNPTGN----PGLATGGSGDVLAGIIAGLLAQGYD 204 (242)
T ss_dssp HHCCSHHHHHHHHH-----HHHT-S-EEEEESTSSEEEEETSEEEEE--------GGGSSTTHHHHHHHHHHHHHHHTSS
T ss_pred cchhhHHHHHHHHH-----hhcC-c-EEEEeCCCcEEEecCcceeEeCCCC----CCCCCCCcccHHHHHHHHHHHccCC
Confidence 32456667777663 1222 2 4445577666665566666655321 4577889999999888888899999
Q ss_pred HHHHHHHHhHHHHHHh
Q 020625 294 IEECVRAGCYTSHVII 309 (323)
Q Consensus 294 ~~~a~~~A~~~Aa~~~ 309 (323)
+.+|...|+.+=+.+-
T Consensus 205 ~~~Aa~~av~lHg~Ag 220 (242)
T PF01256_consen 205 PFEAACLAVYLHGRAG 220 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998876655443
No 83
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.85 E-value=0.0014 Score=59.57 Aligned_cols=172 Identities=15% Similarity=0.017 Sum_probs=90.9
Q ss_pred CCceeecCchHHHHHHHHHHhcCCCCcEEE-EeeeecCchhHHHHHHHHHcCceeEEee------c-------CCCCcee
Q 020625 36 YNVEYIAGGATQNSIRVAQWMLQIPGATSY-IGCIGKDKFGEEMKKNSKLAGVNVHYYE------D-------ESASTGT 101 (323)
Q Consensus 36 ~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~-~~~vG~D~~g~~i~~~l~~~gi~~~~~~------~-------~~~~t~~ 101 (323)
.....+.||.+.-+|..+++ +| .++.+ .++. .++..++.+.+.+|-.-.+. . ...+...
T Consensus 84 ~~~~~rmGGnAgimAn~la~-lg--~~~Vi~~~~~----lsk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~I 156 (453)
T PRK14039 84 DNSEIRMGGNAGIMANVLSE-LG--ASRVVPNVAV----PSKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPI 156 (453)
T ss_pred cCceEEeCChHHHHHHHHHh-cC--CceEEEcCCC----CCHHHHHhcCCCCEEeccccccccccCccccccccCCCCCc
Confidence 45678999999999988886 45 77544 3321 23344455533333222110 0 0111222
Q ss_pred -EEEEEeCCccce-----eecccccccCC---c--ccCCC-cchhhhhc----cccEEEEeccccccC--------HHHH
Q 020625 102 -CAVCVVGGERSL-----VANLSAANCYK---S--EHLKK-PENWALVE----KAKYFYIAGFFLTVS--------PDSI 157 (323)
Q Consensus 102 -~~~~~~~g~~~~-----~~~~~~~~~~~---~--~~~~~-~~~~~~~~----~~~~v~i~~~~~~~~--------~~~~ 157 (323)
.++.+..|.+.. +..+.+++-+- + ..+.. +++.+.++ .+|.++++|++.... .+.+
T Consensus 157 H~IfEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l 236 (453)
T PRK14039 157 HFVFDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKL 236 (453)
T ss_pred eEEEEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHH
Confidence 222233444331 12222222111 1 11111 23334444 689999999984322 2333
Q ss_pred HHHH---HHHHhC--CCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCC
Q 020625 158 QLVA---EHAAAN--NKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 214 (323)
Q Consensus 158 ~~~~---~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~ 214 (323)
.+.. +.+++. ++++-+.+.+..-.+.....+..+++.+|.+=+|++|+..+....|.
T Consensus 237 ~~~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~ 298 (453)
T PRK14039 237 EDSLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGI 298 (453)
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHccc
Confidence 3333 333222 35677777654333335555678999999999999999999887654
No 84
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.00063 Score=56.33 Aligned_cols=166 Identities=14% Similarity=0.224 Sum_probs=104.9
Q ss_pred hhhccccEEEEeccccccCH---HHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCC-cEEEeCHHHHHHHHh
Q 020625 135 ALVEKAKYFYIAGFFLTVSP---DSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYM-DYIFGNETEARTFSK 210 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~-dvl~~n~~e~~~l~~ 210 (323)
..+.+-+.++|++ .+..++ +.+.++++.++.+++++++|...-+......+.+ +-.+. -++.+|.-|+..|++
T Consensus 97 k~L~RlhavVIGP-GLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l--~~~~~~viLTPNvvEFkRLcd 173 (306)
T KOG3974|consen 97 KLLQRLHAVVIGP-GLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERL--IGGYPKVILTPNVVEFKRLCD 173 (306)
T ss_pred HHHhheeEEEECC-CCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhh--hccCceeeeCCcHHHHHHHHH
Confidence 3477888888875 455555 4577889999999999999997766544433321 12233 455699999999998
Q ss_pred hcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhh-
Q 020625 211 VQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLV- 289 (323)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~- 289 (323)
....+.++-. .+.+|. ..-....++-.|+.-.++..+.+.+..+. +-...-.-|=||...+.+...+.
T Consensus 174 ~~l~~~d~~~-~~~~L~------~~l~nv~vvqKG~~D~ils~~~ev~~~s~----eGs~kRcGGQGDiLaGsla~fl~w 242 (306)
T KOG3974|consen 174 AELDKVDSHS-QMQHLA------AELMNVTVVQKGESDKILSPDSEVRVCST----EGSLKRCGGQGDILAGSLATFLSW 242 (306)
T ss_pred HhhccccchH-HHHHHH------HHhcCeEEEEecCCceeeCCCCeeEEccC----CCCccccCCCcchhhhHHHHHHHH
Confidence 6443333322 233331 11123466777877775554444443331 23566777899999988776653
Q ss_pred ---cCCCHHHHHHHHhHHHHHHhhhcCc
Q 020625 290 ---QEKPIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 290 ---~g~~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
....++++...|..+++..+++-|.
T Consensus 243 ~k~~~~e~~~~~~~a~~a~s~~vr~a~r 270 (306)
T KOG3974|consen 243 AKLLSGEQDSAAFLAAVAGSIMVRRAGR 270 (306)
T ss_pred HHhccCCccchhhhhhhhhHHHHHHHHH
Confidence 2344557788888887777766543
No 85
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.83 E-value=0.00091 Score=62.84 Aligned_cols=154 Identities=19% Similarity=0.099 Sum_probs=91.6
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCC
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 214 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~ 214 (323)
+.++.++.+.++. .+..+ +....+++.+++.+.++++|...-.+.....+ .....++.+|..|+..|++....
T Consensus 316 ~~~~~~~a~viGp-Glg~~-~~~~~~~~~~~~~~~P~VLDAdaL~ll~~~~~-----~~~~~VLTPh~gE~~rL~~~~~~ 388 (508)
T PRK10565 316 ESLEWADVVVIGP-GLGQQ-EWGKKALQKVENFRKPMLWDADALNLLAINPD-----KRHNRVITPHPGEAARLLGCSVA 388 (508)
T ss_pred HHhhcCCEEEEeC-CCCCC-HHHHHHHHHHHhcCCCEEEEchHHHHHhhCcc-----ccCCeEECCCHHHHHHHhCCChh
Confidence 3456778888864 22223 33345557777778899999976432111110 12246888999999999873211
Q ss_pred CC-CCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeC-CeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC
Q 020625 215 ET-DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQD-GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK 292 (323)
Q Consensus 215 ~~-~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~-~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~ 292 (323)
+. .+..+.++.+ .......+++| |..- ++.++ +..+..+. .. ...-++|.||++.+-+.+.+.++.
T Consensus 389 ~v~~~~~~~a~~~------a~~~~~~vvlK-G~~~-iI~~~~~~~~~~~~-G~---~~ma~~GsGDvLaGiIaalla~g~ 456 (508)
T PRK10565 389 EIESDRLLSARRL------VKRYGGVVVLK-GAGT-VIAAEPDALAIIDV-GN---AGMASGGMGDVLSGIIGALLGQKL 456 (508)
T ss_pred hhhhhHHHHHHHH------HHHhCCEEEEe-CCCc-EEEcCCceEEEECC-CC---CCCCCCChHHHHHHHHHHHHHcCC
Confidence 11 1333455555 22222345554 5443 44444 34444332 11 345669999999998888888999
Q ss_pred CHHHHHHHHhHHHHH
Q 020625 293 PIEECVRAGCYTSHV 307 (323)
Q Consensus 293 ~~~~a~~~A~~~Aa~ 307 (323)
++.+|+..|+.+=++
T Consensus 457 ~~~~Aa~~a~~lhg~ 471 (508)
T PRK10565 457 SPYDAACAGCVAHGA 471 (508)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999988888754333
No 86
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.74 E-value=0.002 Score=53.67 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=96.5
Q ss_pred hhhhccccEEEEeccccc-cCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCC--CcEEEeCHHHHHHHHh
Q 020625 134 WALVEKAKYFYIAGFFLT-VSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPY--MDYIFGNETEARTFSK 210 (323)
Q Consensus 134 ~~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~--~dvl~~n~~e~~~l~~ 210 (323)
.+..+-++.+.|+=-++. -..+.....++.+++.+.|+++||-..-......+...++|.+ .+++..|..|...|.+
T Consensus 50 ~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag 129 (265)
T COG2145 50 EEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALAG 129 (265)
T ss_pred HHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHhc
Confidence 344556677776522221 1135667777888999999999996543333344445667654 6999999999999975
Q ss_pred hc----CCC----CCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHH
Q 020625 211 VQ----GWE----TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVG 282 (323)
Q Consensus 211 ~~----~~~----~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~a 282 (323)
.. |.| ..++.++++.+. ..-...+++| |+.-.+ .++.+.+.+..-. | -.-.-||+|+...|
T Consensus 130 ~~~~~kGVDa~~~~~~~~~~a~~~A------~~~~~vvvvT-G~vD~I-sdg~~~~~i~nG~-p--ll~~ItGtGCllga 198 (265)
T COG2145 130 EAGGGKGVDAGDGAADAIEAAKKAA------QKYGTVVVVT-GEVDYI-SDGTRVVVIHNGS-P--LLGKITGTGCLLGA 198 (265)
T ss_pred ccccccccccccchhhHHHHHHHHH------HHhCcEEEEE-CCeeEE-EcCCeEEEEECCC-c--HHhhhhccccHHHH
Confidence 43 333 234555665552 2222445555 554433 3555555554321 1 45677899998888
Q ss_pred HHHHHhhcCCC-HHHHHHHHh
Q 020625 283 GFLSQLVQEKP-IEECVRAGC 302 (323)
Q Consensus 283 g~~~~l~~g~~-~~~a~~~A~ 302 (323)
-..+.+.-..+ .-+|+.-|+
T Consensus 199 v~aaF~av~~d~~~~A~~~A~ 219 (265)
T COG2145 199 VVAAFLAVEKDPLLDAAAEAC 219 (265)
T ss_pred HHHHHHhcCCCHHHHHHHHHH
Confidence 87777777777 355555443
No 87
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.66 E-value=0.0011 Score=61.13 Aligned_cols=167 Identities=16% Similarity=0.093 Sum_probs=79.4
Q ss_pred eecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEe--------ecC-----CCCce-eEEEE
Q 020625 40 YIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYY--------EDE-----SASTG-TCAVC 105 (323)
Q Consensus 40 ~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~--------~~~-----~~~t~-~~~~~ 105 (323)
...||.|.-+|..++.+ + +.+|.+.++++. +.+.+.| +.+|-.-.+ ... +.+.- ..++.
T Consensus 92 ~r~GGnA~imAn~la~l-~-~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlE 164 (444)
T PF04587_consen 92 ERMGGNAGIMANRLANL-E-GCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILE 164 (444)
T ss_dssp EEEESHHHHHHHHHCCT-T--SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEE
T ss_pred cccCchHHHHHHHHHhC-C-CCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEE
Confidence 45999888888777752 2 467777775654 3344555 333321111 000 01122 23333
Q ss_pred EeCCccce-eecccccccC-----CcccCCC-cchhhhhc----cccEEEEeccccccC----HH-------HHHHHHHH
Q 020625 106 VVGGERSL-VANLSAANCY-----KSEHLKK-PENWALVE----KAKYFYIAGFFLTVS----PD-------SIQLVAEH 163 (323)
Q Consensus 106 ~~~g~~~~-~~~~~~~~~~-----~~~~~~~-~~~~~~~~----~~~~v~i~~~~~~~~----~~-------~~~~~~~~ 163 (323)
+..|++.- +..+.+++-+ ....+.. +++.+.+. .+|+++++|++..-. .+ .+.+.++.
T Consensus 165 y~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~ 244 (444)
T PF04587_consen 165 YKKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKL 244 (444)
T ss_dssp E-TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHH
T ss_pred cCCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHh
Confidence 44554321 1222222111 1111111 22334444 499999999985321 11 23333334
Q ss_pred HH-hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcC
Q 020625 164 AA-ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQG 213 (323)
Q Consensus 164 ~~-~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~ 213 (323)
++ ..++++-+.+.+..-.+.....+..+++++|.+=+|++|+..+....+
T Consensus 245 l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~~lg 295 (444)
T PF04587_consen 245 LKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQELANLLSVLG 295 (444)
T ss_dssp HH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHHHTT
T ss_pred ccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHHHHHHHHhC
Confidence 54 466788888765432333555567899999999999999999876554
No 88
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.64 E-value=0.0039 Score=56.70 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=50.6
Q ss_pred ccccEEEEeccccccC-----------HHHHHHHHHHHHh-CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHH
Q 020625 138 EKAKYFYIAGFFLTVS-----------PDSIQLVAEHAAA-NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEA 205 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~ 205 (323)
..+|.++++|++..-. .+-+.+.++.++. .++++-+.+.+..-.+.....+..+++.+|.+=+|++|+
T Consensus 208 ~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~EL 287 (446)
T TIGR02045 208 EPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEI 287 (446)
T ss_pred hcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHH
Confidence 5689999999884321 1223344444433 456677777553322334455668899999999999999
Q ss_pred HHHHhhcCC
Q 020625 206 RTFSKVQGW 214 (323)
Q Consensus 206 ~~l~~~~~~ 214 (323)
..+....|.
T Consensus 288 a~ll~~lg~ 296 (446)
T TIGR02045 288 ANVLSVLGY 296 (446)
T ss_pred HHHHHHhcC
Confidence 998865544
No 89
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.60 E-value=0.0052 Score=55.97 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=49.8
Q ss_pred hhhccccEEEEeccccccC---HHHHHHHHH---HHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHH
Q 020625 135 ALVEKAKYFYIAGFFLTVS---PDSIQLVAE---HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTF 208 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l 208 (323)
+....+|+++++|++.... .+.+..+.+ .++..++++-+++.+.. .......+.++++.+|-+-+|++|+..+
T Consensus 220 ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~-d~~~r~~i~~ilp~vDSlGmNE~ELa~l 298 (453)
T PRK14038 220 EIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTP-DETVREEILGLLGKFYSVGLNEVELASI 298 (453)
T ss_pred hhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccc-hHHHHHHHHhhCccccccccCHHHHHHH
Confidence 3346799999999884321 122333333 33334566777775322 2223444556899999999999999999
Q ss_pred HhhcCC
Q 020625 209 SKVQGW 214 (323)
Q Consensus 209 ~~~~~~ 214 (323)
....+.
T Consensus 299 l~~lg~ 304 (453)
T PRK14038 299 MEVMGE 304 (453)
T ss_pred HHHhcc
Confidence 876554
No 90
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.18 Score=43.61 Aligned_cols=149 Identities=22% Similarity=0.170 Sum_probs=75.7
Q ss_pred hccccEEEEeccccccCHHHHHHHHHHHHhCC-CeEEEeCCchhHHHHHHHHHHhhcCCC-cEEEeCHHHHHHHHhhcCC
Q 020625 137 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAANN-KVFMMNLSAPFICEFFKDALEKVLPYM-DYIFGNETEARTFSKVQGW 214 (323)
Q Consensus 137 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~l~~~-dvl~~n~~e~~~l~~~~~~ 214 (323)
.+..|.+.+++ .+....+....+.+.. +.. .++++|...-.. ......++... -|+.+..-|++.|++....
T Consensus 99 ~~~~~avviGp-GlG~~~~~~~~~~~~l-~~~~~p~ViDADaL~~----la~~~~~~~~~~~VlTPH~gEf~rL~g~~~~ 172 (284)
T COG0063 99 VERADAVVIGP-GLGRDAEGQEALKELL-SSDLKPLVLDADALNL----LAELPDLLDERKVVLTPHPGEFARLLGTEVD 172 (284)
T ss_pred hccCCEEEECC-CCCCCHHHHHHHHHHH-hccCCCEEEeCcHHHH----HHhCcccccCCcEEECCCHHHHHHhcCCccc
Confidence 46788988874 3344443333333222 333 778888864321 11122333333 4555999999999874222
Q ss_pred C-CCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCC-
Q 020625 215 E-TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK- 292 (323)
Q Consensus 215 ~-~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~- 292 (323)
+ ..+-.+.++.+ ...... +|+-.|..-++....++.+..+.- . .-.-+-|.||+.++-+..-|.++.
T Consensus 173 ~~~~~r~~~a~~~------a~~~~~-vvVLKG~~tvI~~~~g~~~~n~~G-~---~~ma~GGtGDvLaGii~alLAq~~~ 241 (284)
T COG0063 173 EIEVDRLEAAREL------AAKYGA-VVVLKGAVTVIADPDGEVFVNPTG-N---PGMATGGTGDVLAGIIGALLAQGPA 241 (284)
T ss_pred ccccchHHHHHHH------HHHcCC-EEEEeCCCCEEEcCCCcEEEcCCC-C---HHhccCcchHHHHHHHHHHHhCCCC
Confidence 2 22334555555 222233 444446555555423344433221 1 234556999998765555555551
Q ss_pred CHHHHHHHHh
Q 020625 293 PIEECVRAGC 302 (323)
Q Consensus 293 ~~~~a~~~A~ 302 (323)
++.+|+..|+
T Consensus 242 ~~~~Aa~~g~ 251 (284)
T COG0063 242 DPLEAAAAGA 251 (284)
T ss_pred CHHHHHHHHH
Confidence 3445444443
No 91
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.78 E-value=0.13 Score=47.31 Aligned_cols=170 Identities=15% Similarity=0.034 Sum_probs=87.2
Q ss_pred CceeecCchHHHHHHHHHHhcCCCC-cEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCcee-EEEEEeCCccce-
Q 020625 37 NVEYIAGGATQNSIRVAQWMLQIPG-ATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGT-CAVCVVGGERSL- 113 (323)
Q Consensus 37 ~~~~~~GG~~~n~a~~l~~l~g~g~-~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~-~~~~~~~g~~~~- 113 (323)
....+.||.|.-+|..++. +| . +|.+.+++..... ...+.+.+|-.-.......+.-. .++.+..|++.-
T Consensus 100 ~~~~~mGGnAgimAn~la~-~g--~~~Vil~~p~~~k~~----~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~~~~ 172 (445)
T cd01938 100 WDELRMGGNAGLMANRLAG-EG--DLKVLLGVPQSSKLQ----AELFLDGPIVVPTFENLIEEDEIHLILEYPRGESWGD 172 (445)
T ss_pred CceEEeCChHHHHHHHHHh-cC--CceEEEecCCCcHHH----HHhCCCCCeeecccccCCCCCccEEEEEcCCCCEecc
Confidence 4568999999998888886 44 7 7777776554322 22222212111111100111222 222233444311
Q ss_pred eecccccc------cCCcccCCCcchhhhh-cc-ccEEEEeccccccC----HHHHHHHHHHHH----h--CCCeEEEeC
Q 020625 114 VANLSAAN------CYKSEHLKKPENWALV-EK-AKYFYIAGFFLTVS----PDSIQLVAEHAA----A--NNKVFMMNL 175 (323)
Q Consensus 114 ~~~~~~~~------~~~~~~~~~~~~~~~~-~~-~~~v~i~~~~~~~~----~~~~~~~~~~~~----~--~~~~~~~d~ 175 (323)
+..+.+++ ..++ .....++...+ +. .|+++++|+.+.-. .....+.++.++ . ..+++=+.+
T Consensus 173 ~~aPraNRfI~~~d~~n~-l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~ 251 (445)
T cd01938 173 FVAPRANRFIFHDDDNNP-MLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLEL 251 (445)
T ss_pred eEcCCCCeEEEecCCcch-hhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEe
Confidence 11112211 1111 11112222333 33 89999999984221 233444444333 2 225666676
Q ss_pred CchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCC
Q 020625 176 SAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 214 (323)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~ 214 (323)
.+..-.+...+.+..+++++|-+=+|++|+..+....+.
T Consensus 252 As~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~~lg~ 290 (445)
T cd01938 252 ASTVDEELREEILHEVVPYVDSLGLNEQELANLLQVLGG 290 (445)
T ss_pred cccccHHHHHHHHHHhcccccccccCHHHHHHHHHHhCC
Confidence 553323335555678899999999999999999765543
No 92
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=92.74 E-value=4.1 Score=36.47 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred hhhccccEEEEecccccc----CH-------HHHHHHHHHHHh-CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCH
Q 020625 135 ALVEKAKYFYIAGFFLTV----SP-------DSIQLVAEHAAA-NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNE 202 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~----~~-------~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~ 202 (323)
+.....|..+++|++.-. +. +...+-++.++. .++++-+.+.+-.-....++.+..+++.++-+=+|+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGldE 300 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGLDE 300 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhhhcCCCH
Confidence 345669999999997421 11 223344444555 566666666543222334555667999999999999
Q ss_pred HHHHHHHhhcC
Q 020625 203 TEARTFSKVQG 213 (323)
Q Consensus 203 ~e~~~l~~~~~ 213 (323)
.|...+....|
T Consensus 301 ~ElA~vl~vlG 311 (466)
T COG4809 301 VELANVLNVLG 311 (466)
T ss_pred HHHHHHHHhhC
Confidence 99998887665
No 93
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=89.89 E-value=1.9 Score=35.70 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=49.7
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEe-----CHHHHHHHHh
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFG-----NETEARTFSK 210 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~-----n~~e~~~l~~ 210 (323)
+...|.++|--+.+.++.+.++++.+++.|+.+.+|-.... ..+.++.+++.+|.+.+ +.+..+.++|
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~----~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG 110 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDA----PASKLLPLAKLCDEVLFDLKIMDATQARDVVK 110 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHhcCEEEEeeccCCHHHHHHHHC
Confidence 34678888766667788999999999999999999887754 33456677777777654 4555556665
No 94
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=87.22 E-value=6.8 Score=34.61 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=84.3
Q ss_pred CCceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccc-ee
Q 020625 36 YNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERS-LV 114 (323)
Q Consensus 36 ~~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~-~~ 114 (323)
....++.||++.-+|.-.. +. ..+.++|+.|.-.. +-|--..+.+..-++++..... +..++.|+.. -.
T Consensus 136 ~R~~~~mGGNA~LMA~R~~--~~--~~~~LlG~~~~R~~-----~~L~P~~~R~~~~~I~~DdiHl-ILEYK~Gd~~G~~ 205 (478)
T KOG4184|consen 136 ERINWYMGGNAPLMAVRFF--ME--GAQVLLGAHMSRKL-----RPLLPKEIRLAGDEIPNDDIHL-ILEYKAGDKWGPY 205 (478)
T ss_pred hhhhhhccCCchHHHHHHH--hc--cceeeecccccchh-----ccccchhhhcccCcCcCCceEE-EEEeccCCccccc
Confidence 3456789998777665544 23 58899999886422 1122222334333333332222 2223333321 00
Q ss_pred ecccccc------cCCcccCCCcchhhhhc--cccEEEEeccccc-c-CHHHHHHHHHHHHh------CCCeEEEeCCch
Q 020625 115 ANLSAAN------CYKSEHLKKPENWALVE--KAKYFYIAGFFLT-V-SPDSIQLVAEHAAA------NNKVFMMNLSAP 178 (323)
Q Consensus 115 ~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~v~i~~~~~~-~-~~~~~~~~~~~~~~------~~~~~~~d~~~~ 178 (323)
..+.+++ ..++...-...+.++++ +.|+++++|..+. . +.|..++=++..++ .|+++-++..+.
T Consensus 206 VAP~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~ 285 (478)
T KOG4184|consen 206 VAPRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASM 285 (478)
T ss_pred ccccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHH
Confidence 1111111 12221111111333333 4799999997642 1 23332222222222 345666676654
Q ss_pred hHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHh
Q 020625 179 FICEFFKDALEKVLPYMDYIFGNETEARTFSK 210 (323)
Q Consensus 179 ~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~ 210 (323)
.-.+...+.+.++++++|-+=+|++|+..|..
T Consensus 286 ~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 286 TNRELMSSIVHQVLPYVDSLGLNEQELLFLTQ 317 (478)
T ss_pred HHHHHHHHHHHHhhhhccccCCCHHHHHHHHH
Confidence 43334555667889999999999999988854
No 95
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=79.03 E-value=6.4 Score=32.78 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=40.8
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
...|.+.++|. .++..+.+.++++..|+..+++++.|++.. .+.+.+|.++
T Consensus 26 ~gtdai~vGGS-~~vt~~~~~~~v~~ik~~~lPvilfp~~~~----------~i~~~aDa~l 76 (223)
T TIGR01768 26 SGTDAILIGGS-QGVTYEKTDTLIEALRRYGLPIILFPSNPT----------NVSRDADALF 76 (223)
T ss_pred cCCCEEEEcCC-CcccHHHHHHHHHHHhccCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 34699999985 356778889999999999999999997644 5667888776
No 96
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=76.99 E-value=24 Score=30.20 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=54.4
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE-----eCHHHHHHHHhhcC
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF-----GNETEARTFSKVQG 213 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~-----~n~~e~~~l~~~~~ 213 (323)
..+.|.++|--+.+..+.+..+++.+++.|+.+.+|-.... ..+..+.+++..|.+. .+.+..+.+++..
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~----~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~- 157 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFL----PPEALEELLPLLDAVLLDLKAFDDELYRKLTGAD- 157 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCC----CHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCC-
Confidence 57888888755666779999999999999999999887654 2333445555555554 4444466666532
Q ss_pred CCCCCHHHHHHHH
Q 020625 214 WETDDVEEIALKL 226 (323)
Q Consensus 214 ~~~~~~~~~~~~l 226 (323)
.+...+.++.+
T Consensus 158 --~~~vl~~~~~l 168 (260)
T COG1180 158 --NEPVLENLELL 168 (260)
T ss_pred --cHHHHHHHHHH
Confidence 23445556666
No 97
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=75.29 E-value=17 Score=28.63 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=60.2
Q ss_pred cEEEEeeeec--CchhHHHHHHHHHcCceeEEe-----ecCCCCceeEEEEEeCCccceeecccccc------cCCcccC
Q 020625 62 ATSYIGCIGK--DKFGEEMKKNSKLAGVNVHYY-----EDESASTGTCAVCVVGGERSLVANLSAAN------CYKSEHL 128 (323)
Q Consensus 62 ~v~~~~~vG~--D~~g~~i~~~l~~~gi~~~~~-----~~~~~~t~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~ 128 (323)
++.+-|.-|. -..-..+.+.|++.|...-++ +..+..++..++-+++|++.++.+.+... ..+.+.+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHH
Confidence 3444444443 234456777888887666654 33455666666555567776654443211 1111222
Q ss_pred C---CcchhhhhccccEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 129 K---KPENWALVEKAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 129 ~---~~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
+ .+....+++.+|+++++-+.+ +.-..-..+.++..-+.+.+++..+
T Consensus 87 e~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 87 EEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred HHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 2 123345567789999997664 2222333444454445555555544
No 98
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=75.09 E-value=10 Score=31.87 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=41.0
Q ss_pred hccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 137 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 137 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
....|.++++|.. ++..+.+.++++..|+..+|+++.|++.. .+-+.+|.++
T Consensus 30 ~~gtdai~vGGS~-~vt~~~~~~~v~~ik~~~lPvilfp~~~~----------~i~~~aDa~l 81 (232)
T PRK04169 30 ESGTDAIIVGGSD-GVTEENVDELVKAIKEYDLPVILFPGNIE----------GISPGADAYL 81 (232)
T ss_pred hcCCCEEEEcCCC-ccchHHHHHHHHHHhcCCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 3567999999853 56678888999999888899999888644 5667788776
No 99
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=70.41 E-value=14 Score=30.85 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=40.7
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHH-hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAA-ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
.+.|.+.++|.. ++..+.+..+++..+ +.++++++.|++.. .+.+++|.++
T Consensus 40 ~GTDaImIGGS~-gvt~~~~~~~v~~ik~~~~lPvilfP~~~~----------~is~~aDavf 91 (240)
T COG1646 40 AGTDAIMIGGSD-GVTEENVDNVVEAIKERTDLPVILFPGSPS----------GISPYADAVF 91 (240)
T ss_pred cCCCEEEECCcc-cccHHHHHHHHHHHHhhcCCCEEEecCChh----------ccCccCCeEE
Confidence 568999999854 667788888888888 78899999998754 4566777766
No 100
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=70.09 E-value=18 Score=30.80 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=62.3
Q ss_pred cchhhhhccccEEEEecccccc---------------CHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCC
Q 020625 131 PENWALVEKAKYFYIAGFFLTV---------------SPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYM 195 (323)
Q Consensus 131 ~~~~~~~~~~~~v~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~ 195 (323)
+++.+.++++++++.||..... ..+....+++.+.+.+.++.+=-+.+...+...+.+....+..
T Consensus 56 ~e~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l 135 (253)
T COG1922 56 PEFREILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGL 135 (253)
T ss_pred HHHHHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCc
Confidence 3456778889999998875321 1256788888888888887666666666555666667777777
Q ss_pred cEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCC
Q 020625 196 DYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGA 246 (323)
Q Consensus 196 dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~ 246 (323)
.++-...--+.. .+. +..++.+ ...++..++|-+|.
T Consensus 136 ~ivg~h~GYf~~--------~e~-~~i~~~I------~~s~pdil~VgmG~ 171 (253)
T COG1922 136 KIVGSHDGYFDP--------EEE-EAIVERI------AASGPDILLVGMGV 171 (253)
T ss_pred eEEEecCCCCCh--------hhH-HHHHHHH------HhcCCCEEEEeCCC
Confidence 666654211111 111 3455555 44566666666654
No 101
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=68.29 E-value=47 Score=26.61 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhCCCeE
Q 020625 155 DSIQLVAEHAAANNKVF 171 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (323)
+....+++.+.+++.++
T Consensus 35 dl~~~l~~~~~~~~~~v 51 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPI 51 (177)
T ss_pred HHHHHHHHHHHHcCCeE
Confidence 33444444444444433
No 102
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.99 E-value=34 Score=27.14 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhCCCe
Q 020625 156 SIQLVAEHAAANNKV 170 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~ 170 (323)
....+++.+.+.+.+
T Consensus 36 l~~~l~~~~~~~~~~ 50 (172)
T PF03808_consen 36 LFPDLLRRAEQRGKR 50 (172)
T ss_pred HHHHHHHHHHHcCCe
Confidence 344444444444443
No 103
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=66.70 E-value=46 Score=26.48 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=57.6
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCC
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDD 218 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~ 218 (323)
.++.+..+|+. ++.+.+..+.+.++++|+.+..||..+- +..+..+.+.+|.+-..++...++..-.+..|.+..+
T Consensus 22 d~~~I~T~Gs~--i~~~~i~~i~~~~~~rgVIIfTDpD~~G--ekIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As 97 (174)
T TIGR00334 22 DVDVIETNGSA--LKDETINLIKKAQKKQGVIILTDPDFPG--EKIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEAS 97 (174)
T ss_pred CceEEEECCCc--cCHHHHHHHHHHhhcCCEEEEeCCCCch--HHHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCC
Confidence 46788887754 5777888887778889988888886532 2355567777899999999988865311224555555
Q ss_pred HHHHHHHH
Q 020625 219 VEEIALKL 226 (323)
Q Consensus 219 ~~~~~~~l 226 (323)
+++..+.|
T Consensus 98 ~e~I~~AL 105 (174)
T TIGR00334 98 VEAIIAAL 105 (174)
T ss_pred HHHHHHHH
Confidence 66655555
No 104
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=65.06 E-value=36 Score=29.60 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=37.7
Q ss_pred cEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 141 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 141 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
..|.++|--+.+.++.+.++++.+++.|..+.++...... .+.+.++++..|++.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~----~~~~~~ll~~~d~~~ 181 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTP----WETIEKVLPYVDLFL 181 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCC----HHHHHHHHhhCCEEE
Confidence 4566776345567788889999999999877777665432 234556666677754
No 105
>PHA00438 hypothetical protein
Probab=62.32 E-value=6.3 Score=26.32 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=15.4
Q ss_pred CCCcchHHHHHHHHHhhc
Q 020625 273 TNGAGDAFVGGFLSQLVQ 290 (323)
Q Consensus 273 ~tGAGDaf~ag~~~~l~~ 290 (323)
-.|..++|+|||++||..
T Consensus 46 ~~G~SE~~IaGfl~Gl~y 63 (81)
T PHA00438 46 QAGYSEAFIAGFLAGLQY 63 (81)
T ss_pred HcCCcHHHHHHHHHHHHH
Confidence 368999999999999853
No 106
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=59.57 E-value=24 Score=29.20 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=40.2
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
++|++.+- .+ ..+.+.++++..|+.|++ +.+||..+. +.++.+++.+|++.+
T Consensus 84 gad~It~H---~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~------~~i~~~l~~vD~Vll 137 (220)
T COG0036 84 GADIITFH---AE-ATEHIHRTIQLIKELGVKAGLVLNPATPL------EALEPVLDDVDLVLL 137 (220)
T ss_pred CCCEEEEE---ec-cCcCHHHHHHHHHHcCCeEEEEECCCCCH------HHHHHHHhhCCEEEE
Confidence 46877664 23 455778888999999987 788988765 568899999999884
No 107
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=58.69 E-value=86 Score=24.62 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=56.9
Q ss_pred HHHHHHHHcCceeEEee-cC--CCCcee---EEEEEeCCccc-eeecccccc---cCCcccCCCc--chhhhh-ccccEE
Q 020625 77 EMKKNSKLAGVNVHYYE-DE--SASTGT---CAVCVVGGERS-LVANLSAAN---CYKSEHLKKP--ENWALV-EKAKYF 143 (323)
Q Consensus 77 ~i~~~l~~~gi~~~~~~-~~--~~~t~~---~~~~~~~g~~~-~~~~~~~~~---~~~~~~~~~~--~~~~~~-~~~~~v 143 (323)
.+.+.|+..|+.+.++. .. ....+. .+..+.+|.+. +....+... .+++.-+... .....+ ..+|++
T Consensus 18 ~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A~~~l~~al~~~~DLl 97 (159)
T PF10649_consen 18 AFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAEASAALRRALAEGADLL 97 (159)
T ss_pred HHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHHHHHHHHHHHhcCCCEE
Confidence 35567788899998863 22 222222 23333356553 344444333 3455544431 122334 448999
Q ss_pred EEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCCc
Q 020625 144 YIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLSA 177 (323)
Q Consensus 144 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 177 (323)
+++-|. .+....-+...+..+-..|+|+..-+..
T Consensus 98 ivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 98 IVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred EEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 998765 2333445666777777889988776654
No 108
>PRK05968 hypothetical protein; Provisional
Probab=58.09 E-value=1.5e+02 Score=27.04 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=27.0
Q ss_pred hccccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 137 VEKAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 137 ~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.+.++|+++.-. .......+.++.+.++++++.+++|-.
T Consensus 145 i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 145 LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred cccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 3456777776433 123346778888888889988877763
No 109
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=57.08 E-value=36 Score=28.03 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=38.9
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHh-CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAA-NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
..|.+.++|. .++..+.+.++++.+|+ ..+|+++.+++.. .+.+.+|.++
T Consensus 24 gtDaI~VGGS-~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~----------~i~~~aD~~~ 74 (205)
T TIGR01769 24 GTDAIMVGGS-LGIVESNLDQTVKKIKKITNLPVILFPGNVN----------GLSRYADAVF 74 (205)
T ss_pred CCCEEEEcCc-CCCCHHHHHHHHHHHHhhcCCCEEEECCCcc----------ccCcCCCEEE
Confidence 3699999986 35678888888888888 5689988888644 5667788776
No 110
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=56.42 E-value=79 Score=28.62 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=61.8
Q ss_pred hcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhh
Q 020625 56 MLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWA 135 (323)
Q Consensus 56 l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (323)
+++.|..+.--+.+=...+ ..+...|++.||++.++...+. +.++. .
T Consensus 97 la~aGD~iVss~~LYGGT~-~lf~~tl~~~Gi~v~fvd~~d~----------------------------~~~~~----a 143 (426)
T COG2873 97 LAGAGDNIVSSSKLYGGTY-NLFSHTLKRLGIEVRFVDPDDP----------------------------ENFEA----A 143 (426)
T ss_pred hccCCCeeEeeccccCchH-HHHHHHHHhcCcEEEEeCCCCH----------------------------HHHHH----H
Confidence 5666777766655533333 5677788999999888643211 11110 1
Q ss_pred hhccccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeC
Q 020625 136 LVEKAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGN 201 (323)
Q Consensus 136 ~~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n 201 (323)
.-++.+.|++..+. +...---++.+.+.|+++|+++++|---.. ...++.+-..+|++.=|
T Consensus 144 I~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~at-----pyl~rP~~hGADIVvHS 205 (426)
T COG2873 144 IDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFAT-----PYLCRPIEHGADIVVHS 205 (426)
T ss_pred hCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCc-----ceecchhhcCCCEEEEe
Confidence 11245566655443 122222367888889999999888753211 11245566678988853
No 111
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=55.93 E-value=9.2 Score=25.53 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=16.4
Q ss_pred CCCCcchHHHHHHHHHhhcC
Q 020625 272 DTNGAGDAFVGGFLSQLVQE 291 (323)
Q Consensus 272 d~tGAGDaf~ag~~~~l~~g 291 (323)
...|+.++|++||+.||..-
T Consensus 45 r~~G~SE~~I~Gfl~Gl~~A 64 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQYA 64 (77)
T ss_pred HHccccHHHHHHHHHHHHHH
Confidence 44599999999999998543
No 112
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=54.96 E-value=88 Score=24.77 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHh
Q 020625 153 SPDSIQLVAEHAAA 166 (323)
Q Consensus 153 ~~~~~~~~~~~~~~ 166 (323)
.++.+..+.+..++
T Consensus 55 ~~~~~~~~~~~l~~ 68 (171)
T cd06533 55 KPEVLEKAAERLRA 68 (171)
T ss_pred CHHHHHHHHHHHHH
Confidence 34555555544443
No 113
>COG1159 Era GTPase [General function prediction only]
Probab=53.93 E-value=1.5e+02 Score=25.88 Aligned_cols=142 Identities=8% Similarity=0.067 Sum_probs=71.9
Q ss_pred CCcEEEEeeeecCchhHH-HHHHHHHcCceeEEeecCCCCceeEEEEE-eCCccceeecccccccCCcccCCC---cchh
Q 020625 60 PGATSYIGCIGKDKFGEE-MKKNSKLAGVNVHYYEDESASTGTCAVCV-VGGERSLVANLSAANCYKSEHLKK---PENW 134 (323)
Q Consensus 60 g~~v~~~~~vG~D~~g~~-i~~~l~~~gi~~~~~~~~~~~t~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~---~~~~ 134 (323)
+.++.+++.+|....|+. +.+.+-...|.. +......|+..+.-+ .+++..+++...+.-.-....+.. ...+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisI--vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISI--VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEe--ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 378899999999888887 777776554443 322222333333222 244555555444333222222222 3356
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHhCC--CeEEEeCCc---hhH-HHHHHHHHHhhcCCCcEEEeCHH
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANN--KVFMMNLSA---PFI-CEFFKDALEKVLPYMDYIFGNET 203 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~---~~~-~~~~~~~~~~~l~~~dvl~~n~~ 203 (323)
..+.++|++.+---...-....-..+++..++.. +.+.+|--+ +.- .....+.....+++.+++-.|..
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~ 155 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISAL 155 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecc
Confidence 7788999887643221111223445555555533 334443211 111 12234445566677777766543
No 114
>PRK05967 cystathionine beta-lyase; Provisional
Probab=53.59 E-value=1.3e+02 Score=27.69 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=27.3
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|+++.-. +......+.++.+.|+++|+.+++|-.
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence 46788887422 334456788999999999988877753
No 115
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=53.47 E-value=87 Score=22.97 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=28.4
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchh
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPF 179 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 179 (323)
+.+.+.|+++++ .+.+...++...+.+.|+ .++|.+...
T Consensus 62 ~~~~~~Dvvf~a-----~~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 62 EELSDVDVVFLA-----LPHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp HHHTTESEEEE------SCHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred hHhhcCCEEEec-----CchhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 456899999987 366777888888888888 446776544
No 116
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=51.85 E-value=80 Score=26.26 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=37.3
Q ss_pred cEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeC
Q 020625 141 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGN 201 (323)
Q Consensus 141 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n 201 (323)
+.|.+.|--+.+.++.+..+++.+++.+..+.++....... ..+.+.++++..|.+.++
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~--~~~~~~~ll~~~d~v~is 125 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGG--CTEAADELLEYTDLVLLD 125 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCc--cHHHHHHHHHhCCEEEEe
Confidence 45777764466778888899999999998777765542210 123344555566766543
No 117
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=51.37 E-value=30 Score=29.02 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=29.0
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
...|.++++|...+...+.+..+++.. .++|+++.|++.. .+.+.+|.++
T Consensus 31 ~gtDai~VGGS~~~~~~d~vv~~ik~~--~~lPvilfPg~~~----------~vs~~aDail 80 (230)
T PF01884_consen 31 SGTDAIIVGGSDTGVTLDNVVALIKRV--TDLPVILFPGSPS----------QVSPGADAIL 80 (230)
T ss_dssp TT-SEEEEE-STHCHHHHHHHHHHHHH--SSS-EEEETSTCC----------G--TTSSEEE
T ss_pred cCCCEEEECCCCCccchHHHHHHHHhc--CCCCEEEeCCChh----------hcCcCCCEEE
Confidence 678999999965122234444444433 7788999998754 4557787766
No 118
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.04 E-value=91 Score=28.99 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=24.0
Q ss_pred cccEEEEeccccccCH---HHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFFLTVSP---DSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|++... ..+. -.+.++.+.|+++|+.++.|-.
T Consensus 147 ~Tk~I~~e~p--gnP~~~v~Di~~I~~iA~~~gi~livD~T 185 (432)
T PRK06702 147 KTKLVYAESL--GNPAMNVLNFKEFSDAAKELEVPFIVDNT 185 (432)
T ss_pred CCeEEEEEcC--CCccccccCHHHHHHHHHHcCCEEEEECC
Confidence 4567776542 2111 1478888888999998888874
No 119
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=50.12 E-value=1e+02 Score=27.24 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=61.5
Q ss_pred EEEecccc---ccCHHHHHHHHHHHHhCC--CeEEEeCCchhHHHHHHHHHHhhcCC--CcEEE---eCHHHHHHHHhhc
Q 020625 143 FYIAGFFL---TVSPDSIQLVAEHAAANN--KVFMMNLSAPFICEFFKDALEKVLPY--MDYIF---GNETEARTFSKVQ 212 (323)
Q Consensus 143 v~i~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~l~~--~dvl~---~n~~e~~~l~~~~ 212 (323)
++.+|.++ ++++++..++++..++++ ..+++.-++....++..+.+.+++.. ..|-+ -..++.+..+=-+
T Consensus 106 IFTSGSFLD~~EVP~e~R~~Il~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINK 185 (358)
T COG1244 106 IFTSGSFLDPEEVPREARRYILERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINK 185 (358)
T ss_pred EEcccccCChhhCCHHHHHHHHHHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhc
Confidence 44556554 467899999999998876 45999999888877777777777654 34444 4456666666566
Q ss_pred CCCCCCHHHHHHHHhc
Q 020625 213 GWETDDVEEIALKLSQ 228 (323)
Q Consensus 213 ~~~~~~~~~~~~~l~~ 228 (323)
|++.++..++++.+++
T Consensus 186 GftF~df~~A~~~ir~ 201 (358)
T COG1244 186 GFTFEDFVRAAEIIRN 201 (358)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 7777788888888744
No 120
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.64 E-value=43 Score=28.53 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEe
Q 020625 217 DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVA 252 (323)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~ 252 (323)
++.+++++.+ ...+.+.+++|.|++..-.+
T Consensus 116 ~~~~eA~~~l------~~~~~~~iflttGsk~L~~f 145 (249)
T PF02571_consen 116 DSYEEAAELL------KELGGGRIFLTTGSKNLPPF 145 (249)
T ss_pred CCHHHHHHHH------hhcCCCCEEEeCchhhHHHH
Confidence 5677777777 44555778999999876433
No 121
>PRK09028 cystathionine beta-lyase; Provisional
Probab=47.40 E-value=1.4e+02 Score=27.47 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=26.4
Q ss_pred ccccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 138 EKAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 138 ~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
++.++|+++.-. +......+.++++.++++|..+++|-
T Consensus 145 ~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~ 183 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDN 183 (394)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 357788887533 22234567888899999998877775
No 122
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=45.97 E-value=47 Score=28.96 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=31.8
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHH
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFS 209 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~ 209 (323)
.+.|+++++|+. .+.+.+ .++-...+.+++............++.+ -=+|.-++|+..+.
T Consensus 117 ~kPdLIIiggR~----ak~yd~----l~kiAPti~l~~d~~n~~~S~~~n~e~L----g~IFgkE~eAk~~~ 176 (320)
T COG4607 117 AKPDLIIIGGRA----AKAYDK----LSKIAPTIDLGADTANLIESTKQNIETL----GKIFGKEEEAKELL 176 (320)
T ss_pred cCCCEEEECcHH----HHHHHH----HHhhCCeEEeccchHHHHHHHHHHHHHH----HHHhCchHHHHHHH
Confidence 578999998753 233444 4444457777776544322222222222 22344556666654
No 123
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=45.88 E-value=1.7e+02 Score=26.62 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=52.8
Q ss_pred cEEEEeeeecCchhHHHHH-HHHHcCceeEEee-cCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhcc
Q 020625 62 ATSYIGCIGKDKFGEEMKK-NSKLAGVNVHYYE-DESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEK 139 (323)
Q Consensus 62 ~v~~~~~vG~D~~g~~i~~-~l~~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (323)
++.++|.-| ..|+.+++ .|++..+....+. ......+ ++. ....+. .....++.. .+.+.+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~~sg---------~~~-~~f~g~--~~~v~~~~~---~~~~~~ 65 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTSQAG---------GAA-PSFGGK--EGTLQDAFD---IDALKK 65 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecchhhC---------Ccc-cccCCC--cceEEecCC---hhHhcC
Confidence 455565555 57888887 8887777643332 1111111 111 011110 011111110 133578
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCchh
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAPF 179 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 179 (323)
.|+++++ .+.+...++...+.+.|.+ +++|.++.+
T Consensus 66 ~Divf~a-----~~~~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 66 LDIIITC-----QGGDYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred CCEEEEC-----CCHHHHHHHHHHHHhCCCCeEEEECChHH
Confidence 9999886 3567888888888888874 778887644
No 124
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=45.50 E-value=2e+02 Score=24.77 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=27.9
Q ss_pred cCCCCcchHHHHHHHHHhhc------CCCHHHHHHHHhHH
Q 020625 271 VDTNGAGDAFVGGFLSQLVQ------EKPIEECVRAGCYT 304 (323)
Q Consensus 271 ~d~tGAGDaf~ag~~~~l~~------g~~~~~a~~~A~~~ 304 (323)
.-.+|+|-+|.+-|+-+|.. |.+.++|.+++...
T Consensus 169 tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 169 SNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred eeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44579999999999999876 59999988877644
No 125
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.04 E-value=23 Score=28.44 Aligned_cols=42 Identities=31% Similarity=0.524 Sum_probs=34.4
Q ss_pred CCCcchHHHHHHHHHh-hcCCCHHHHHHHHhHHHHHHhhhcCc
Q 020625 273 TNGAGDAFVGGFLSQL-VQEKPIEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 273 ~tGAGDaf~ag~~~~l-~~g~~~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
--|.|-+|+=||+-.- -.++++|||++|-..+-++++.+-|.
T Consensus 146 IgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGs 188 (224)
T KOG0174|consen 146 IGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGS 188 (224)
T ss_pred eccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 3488988887777554 45899999999999999999988876
No 126
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=44.66 E-value=59 Score=27.27 Aligned_cols=53 Identities=9% Similarity=0.153 Sum_probs=37.1
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
++|++.+-. +.......++++..|+.|.+ +.++|..+. +.+..+++.+|++.+
T Consensus 82 Gad~it~H~---Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~------~~l~~~l~~vD~VLv 136 (229)
T PRK09722 82 GADFITLHP---ETINGQAFRLIDEIRRAGMKVGLVLNPETPV------ESIKYYIHLLDKITV 136 (229)
T ss_pred CCCEEEECc---cCCcchHHHHHHHHHHcCCCEEEEeCCCCCH------HHHHHHHHhcCEEEE
Confidence 578776632 32223456788999999977 778887644 557888999998873
No 127
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=43.64 E-value=1.2e+02 Score=25.21 Aligned_cols=132 Identities=17% Similarity=0.065 Sum_probs=63.8
Q ss_pred eecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEEEEecc
Q 020625 69 IGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGF 148 (323)
Q Consensus 69 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~ 148 (323)
+|++.....+.+.|++.+.+...+.....+........ ......... .......... ....+.+.+++.|-
T Consensus 2 ~GD~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~----~~~~~~~~vii~GG 72 (286)
T PF04230_consen 2 IGDDLILEALLKLLKKHGPDAEIIIFSPDPDEFSKYYK-NKSIFNIDL----SKLWRKRRRK----SKIKNADDVIIGGG 72 (286)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEEeCCChHHHHHHhc-ccccchhhh----hhhhhhhhcc----cccccCCeEEEECC
Confidence 57777778889999999877777643322111100000 000000000 0000000000 00045566666654
Q ss_pred c----cccCHH---HHHHHHHHHHhCCCeEEE-eCCc-hhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHH
Q 020625 149 F----LTVSPD---SIQLVAEHAAANNKVFMM-NLSA-PFICEFFKDALEKVLPYMDYIFGNETEARTFS 209 (323)
Q Consensus 149 ~----~~~~~~---~~~~~~~~~~~~~~~~~~-d~~~-~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~ 209 (323)
. ...... ........++..+.++++ -.+- +.........++.+++.++.+.+-++....+.
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l 142 (286)
T PF04230_consen 73 GGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSKADYISVRDEYSYELL 142 (286)
T ss_pred cccccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhCCCEEEECCHHHHHHH
Confidence 1 111111 224555667777777443 3332 23334466678889999999888776655533
No 128
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.83 E-value=77 Score=22.28 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=29.8
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
..+.++|+|++-. --++-.....+-+.|++.++++++--
T Consensus 44 ~~i~~aD~VIv~t--~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVFT--DYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEEe--CCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 4577899988743 23567888899999999999976654
No 129
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=39.40 E-value=1.6e+02 Score=22.67 Aligned_cols=57 Identities=9% Similarity=-0.020 Sum_probs=40.6
Q ss_pred cEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHH
Q 020625 141 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETE 204 (323)
Q Consensus 141 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e 204 (323)
+.|.++|-- +..+.+.++++.+++.|..+.++..... .+..+++++..|+++.....
T Consensus 63 ~gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~-----~~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 63 SCVLFLGGE--WNREALLSLLKIFKEKGLKTCLYTGLEP-----KDIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred CEEEEechh--cCHHHHHHHHHHHHHCCCCEEEECCCCC-----HHHHHHHHHhCCEEEEChHH
Confidence 457776633 5567788999999999988877765322 23456778899999987654
No 130
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.10 E-value=1.9e+02 Score=24.72 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 154 PDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
.+.+..+.+.+++.|+++.-++-... .++.+.+.+|++++
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d~~-------~v~~~~e~vdilqI 104 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMSER-------QLEEAYDYLDVIQV 104 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCHH-------HHHHHHhcCCEEEE
Confidence 46678888888999999988886543 24455557888884
No 131
>PRK07582 cystathionine gamma-lyase; Validated
Probab=38.99 E-value=2.9e+02 Score=24.86 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=26.8
Q ss_pred CceeecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEee
Q 020625 37 NVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYE 93 (323)
Q Consensus 37 ~~~~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~ 93 (323)
......+|...+.+...+ +++.|.++.... -+--..-..+...+++.|+.+.++.
T Consensus 67 ~~v~~~sG~~Ai~~~l~a-ll~~Gd~Vl~~~-~~y~~~~~~~~~~l~~~G~~v~~v~ 121 (366)
T PRK07582 67 EALVFPSGMAAITAVLRA-LLRPGDTVVVPA-DGYYQVRALAREYLAPLGVTVREAP 121 (366)
T ss_pred CEEEECCHHHHHHHHHHH-hcCCCCEEEEeC-CCcHhHHHHHHHHHhcCeEEEEEEC
Confidence 344455666655444434 466555444331 1111111223345667788777764
No 132
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=38.48 E-value=42 Score=24.01 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.2
Q ss_pred cCCCCcchHHHHHHHHHhhcC-CCHHHHHHH
Q 020625 271 VDTNGAGDAFVGGFLSQLVQE-KPIEECVRA 300 (323)
Q Consensus 271 ~d~tGAGDaf~ag~~~~l~~g-~~~~~a~~~ 300 (323)
.|-.|-||..-|-++|++++| .+.+||++.
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEavei 83 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAVEI 83 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHH
Confidence 588899999999999999998 478888764
No 133
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=38.44 E-value=1.6e+02 Score=21.73 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=59.1
Q ss_pred EEEEeeeecCchhHHHHHHHHH-cCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhcccc
Q 020625 63 TSYIGCIGKDKFGEEMKKNSKL-AGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAK 141 (323)
Q Consensus 63 v~~~~~vG~D~~g~~i~~~l~~-~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (323)
+.++|..| ..|+.+.+.+.+ .++.......... +.. .|+.. -...+.. .....-. .+..+.+..+|
T Consensus 3 V~i~G~~G--rMG~~i~~~i~~~~~~~lv~~v~~~~-~~~------~g~d~-g~~~~~~-~~~~~v~--~~l~~~~~~~D 69 (124)
T PF01113_consen 3 VGIVGASG--RMGRAIAEAILESPGFELVGAVDRKP-SAK------VGKDV-GELAGIG-PLGVPVT--DDLEELLEEAD 69 (124)
T ss_dssp EEEETTTS--HHHHHHHHHHHHSTTEEEEEEEETTT-STT------TTSBC-HHHCTSS-T-SSBEB--S-HHHHTTH-S
T ss_pred EEEECCCC--HHHHHHHHHHHhcCCcEEEEEEecCC-ccc------ccchh-hhhhCcC-Ccccccc--hhHHHhcccCC
Confidence 44444444 579999998887 7777777532211 000 01110 0000000 0000000 12335566688
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhCCCeEEE-eCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 142 YFYIAGFFLTVSPDSIQLVAEHAAANNKVFMM-NLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 142 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
+++-- ..++.....++.+.++++++++ ..+ |.++..+.++++.+...++.
T Consensus 70 VvIDf-----T~p~~~~~~~~~~~~~g~~~ViGTTG---~~~~~~~~l~~~a~~~~vl~ 120 (124)
T PF01113_consen 70 VVIDF-----TNPDAVYDNLEYALKHGVPLVIGTTG---FSDEQIDELEELAKKIPVLI 120 (124)
T ss_dssp EEEEE-----S-HHHHHHHHHHHHHHT-EEEEE-SS---SHHHHHHHHHHHTTTSEEEE
T ss_pred EEEEc-----CChHHhHHHHHHHHhCCCCEEEECCC---CCHHHHHHHHHHhccCCEEE
Confidence 65532 1578888899999999988655 433 33334556777777777776
No 134
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=38.39 E-value=79 Score=20.40 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhcCCCHHHHHHHHh
Q 020625 278 DAFVGGFLSQLVQEKPIEECVRAGC 302 (323)
Q Consensus 278 Daf~ag~~~~l~~g~~~~~a~~~A~ 302 (323)
|+|.+|+.+++. +.+....+..+.
T Consensus 4 Daf~vg~~~g~~-~~~~~~~~~~~~ 27 (67)
T PF02659_consen 4 DAFAVGISYGLR-GISRRIILLIAL 27 (67)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHH
Confidence 999999999988 444444444333
No 135
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=38.35 E-value=2.5e+02 Score=23.96 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=44.5
Q ss_pred hhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhc-CCCcEEEeCHHHH
Q 020625 136 LVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVL-PYMDYIFGNETEA 205 (323)
Q Consensus 136 ~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l-~~~dvl~~n~~e~ 205 (323)
...++|++++.+.. ++++.+.++++.++..|..+.+|..+.. + .+... -.+|++-.|....
T Consensus 130 ~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~~~------E-~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 130 RAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHDEE------E-LERALKLGAPLIGINNRNL 191 (260)
T ss_pred HHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCCHH------H-HHHHHHcCCCEEEECCCCc
Confidence 34578999998754 3568899999999999999999997643 2 22222 3789998885443
No 136
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=38.17 E-value=56 Score=23.03 Aligned_cols=61 Identities=18% Similarity=0.026 Sum_probs=41.7
Q ss_pred cEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHH
Q 020625 141 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTF 208 (323)
Q Consensus 141 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l 208 (323)
+++..||.....+.-.-.++-+.++++|+++.++... ........+.+|++..+.+=...+
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~-------v~~~~~~~~~aDiiv~s~~l~~~~ 63 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCA-------VDEIKALTDGADIIVTSTKLADEF 63 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEE-------ecccccCCCcccEEEEehHhhhhc
Confidence 5677888655544445556667788999986666542 223567788899999987765554
No 137
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=37.32 E-value=1.5e+02 Score=23.94 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=37.2
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeC-CchhHHHHHHHHHHhhcC-CCcEEEeC
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNL-SAPFICEFFKDALEKVLP-YMDYIFGN 201 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~l~-~~dvl~~n 201 (323)
.++|++.+.+. .++....++++.++++|.++.+++ .+.. ..+....+.+ .+|++.++
T Consensus 75 ~Gad~i~vh~~---~~~~~~~~~i~~~~~~g~~~~~~~~~~~t----~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGV---ADDATIKGAVKAAKKHGKEVQVDLINVKD----KVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEecc---CCHHHHHHHHHHHHHcCCEEEEEecCCCC----hHHHHHHHHHcCCCEEEEc
Confidence 46788877653 234567889999999999988774 3222 2233444444 78999864
No 138
>PRK06444 prephenate dehydrogenase; Provisional
Probab=36.77 E-value=1.8e+02 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=18.9
Q ss_pred EEEEeeeecCchhHHHHHHHHHcCceeE
Q 020625 63 TSYIGCIGKDKFGEEMKKNSKLAGVNVH 90 (323)
Q Consensus 63 v~~~~~vG~D~~g~~i~~~l~~~gi~~~ 90 (323)
+.++|.- ...|+++.+.+++.|....
T Consensus 3 ~~iiG~~--G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 3 EIIIGKN--GRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred EEEEecC--CcHHHHHHHHHHhCCCEEE
Confidence 3444433 5689999999999997753
No 139
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=36.34 E-value=3.2e+02 Score=24.58 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=52.8
Q ss_pred CcEEEEeeeecCchhHHHHHHHH-HcCceeEEee--cCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhh
Q 020625 61 GATSYIGCIGKDKFGEEMKKNSK-LAGVNVHYYE--DESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALV 137 (323)
Q Consensus 61 ~~v~~~~~vG~D~~g~~i~~~l~-~~gi~~~~~~--~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (323)
.++.++|.-| ..|+.+++.|. +..+....+. ......+..+.+ .++ .+..+.++. ..+
T Consensus 6 ~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~--~~~-----------~l~v~~~~~----~~~ 66 (347)
T PRK06728 6 YHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF--KGR-----------EIIIQEAKI----NSF 66 (347)
T ss_pred CEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee--CCc-----------ceEEEeCCH----HHh
Confidence 5677777766 57999999999 4777744331 111222222211 111 111222221 235
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP 178 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 178 (323)
.+.|+++++ .+.+...++...+.+.|.. ++|.++.
T Consensus 67 ~~~Divf~a-----~~~~~s~~~~~~~~~~G~~-VID~Ss~ 101 (347)
T PRK06728 67 EGVDIAFFS-----AGGEVSRQFVNQAVSSGAI-VIDNTSE 101 (347)
T ss_pred cCCCEEEEC-----CChHHHHHHHHHHHHCCCE-EEECchh
Confidence 678999886 3567778888887777754 4666543
No 140
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=36.30 E-value=2.6e+02 Score=25.29 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=23.0
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|+++... +......+.++.+.++++++.+++|-.
T Consensus 139 ~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 139 NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 45677765432 111122467777778888888877764
No 141
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=35.49 E-value=68 Score=26.30 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=35.6
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEE-eC
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIF-GN 201 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dvl~-~n 201 (323)
+++++.+- .+ ..+...++++..|+.|.+ +.++|..+. +.++.+++..|.+. ++
T Consensus 80 g~~~i~~H---~E-~~~~~~~~i~~ik~~g~k~GialnP~T~~------~~~~~~l~~vD~VlvMs 135 (201)
T PF00834_consen 80 GADYITFH---AE-ATEDPKETIKYIKEAGIKAGIALNPETPV------EELEPYLDQVDMVLVMS 135 (201)
T ss_dssp T-SEEEEE---GG-GTTTHHHHHHHHHHTTSEEEEEE-TTS-G------GGGTTTGCCSSEEEEES
T ss_pred CCCEEEEc---cc-chhCHHHHHHHHHHhCCCEEEEEECCCCc------hHHHHHhhhcCEEEEEE
Confidence 35776663 23 334567888999999987 677887654 44778999999987 44
No 142
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=35.46 E-value=3.4e+02 Score=24.69 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=22.3
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|+++.-. +......+.++.+.|+++++.+++|-.
T Consensus 146 ~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 146 NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence 45677765322 111112357777788888888777763
No 143
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=35.25 E-value=2.9e+02 Score=23.78 Aligned_cols=184 Identities=21% Similarity=0.263 Sum_probs=100.4
Q ss_pred EeeeecCchhHHHHHHHHHcC-ceeEEeecCCCCceeEEEEEeCCccc-eeecccccccCCcccCCCcchhhhhccccEE
Q 020625 66 IGCIGKDKFGEEMKKNSKLAG-VNVHYYEDESASTGTCAVCVVGGERS-LVANLSAANCYKSEHLKKPENWALVEKAKYF 143 (323)
Q Consensus 66 ~~~vG~D~~g~~i~~~l~~~g-i~~~~~~~~~~~t~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 143 (323)
++.+|....|+.+..-|.+.| ++-..+...++. ...+. +....+ ... ..........+|++
T Consensus 4 IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~---------~e~~~~l~~~~g------~~~--~~~~~~~~~~advv 66 (266)
T COG0345 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS---------EEKRAALAAEYG------VVT--TTDNQEAVEEADVV 66 (266)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC---------HHHHHHHHHHcC------Ccc--cCcHHHHHhhCCEE
Confidence 577888889999999988887 443333222111 11121 111111 110 11234567889999
Q ss_pred EEeccccccCHHHHHHHHHHHHh--CC-CeEEEeCCchhHHHHHHHHHHhhcCCCcEEE--eCHHHHHHHHhhcCCCC--
Q 020625 144 YIAGFFLTVSPDSIQLVAEHAAA--NN-KVFMMNLSAPFICEFFKDALEKVLPYMDYIF--GNETEARTFSKVQGWET-- 216 (323)
Q Consensus 144 ~i~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~--~n~~e~~~l~~~~~~~~-- 216 (323)
+++ +-|....++++..+. .+ ..+++-.+-+ .+.++.+++...++- +|-.- ..-.+..+...
T Consensus 67 ~La-----vKPq~~~~vl~~l~~~~~~~lvISiaAGv~------~~~l~~~l~~~~vvR~MPNt~a-~vg~g~t~i~~~~ 134 (266)
T COG0345 67 FLA-----VKPQDLEEVLSKLKPLTKDKLVISIAAGVS------IETLERLLGGLRVVRVMPNTPA-LVGAGVTAISANA 134 (266)
T ss_pred EEE-----eChHhHHHHHHHhhcccCCCEEEEEeCCCC------HHHHHHHcCCCceEEeCCChHH-HHcCcceeeecCc
Confidence 986 567788888888873 22 3455555443 355778887666766 55442 11122222111
Q ss_pred ---CCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhh----
Q 020625 217 ---DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLV---- 289 (323)
Q Consensus 217 ---~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~---- 289 (323)
++..+.+..+. + .- ++..+++--... .+...+|+|-+|.+-|+-+|.
T Consensus 135 ~~~~~~~~~v~~l~------~-----------~~-------G~v~~v~E~~~d--a~TaisGSgPAyv~~~iEal~~agv 188 (266)
T COG0345 135 NVSEEDKAFVEALL------S-----------AV-------GKVVEVEESLMD--AVTALSGSGPAYVFLFIEALADAGV 188 (266)
T ss_pred cCCHHHHHHHHHHH------H-----------hc-------CCeEEechHHhh--HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 11122223321 1 01 122222210010 345678999999998887774
Q ss_pred -cCCCHHHHHHHHhHH
Q 020625 290 -QEKPIEECVRAGCYT 304 (323)
Q Consensus 290 -~g~~~~~a~~~A~~~ 304 (323)
.|.+.++|.+++...
T Consensus 189 ~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 189 RLGLPREEARELAAQT 204 (266)
T ss_pred HcCCCHHHHHHHHHHH
Confidence 589999998887654
No 144
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=35.09 E-value=1.2e+02 Score=25.30 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=32.5
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhC--CCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAAN--NKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
...|.+.++|.. ++. +...+.++..++. .+++++.|++.. .+.+.+|.++
T Consensus 24 ~gtdai~vGGS~-~v~-~~~~~~~~~ik~~~~~~Pvilfp~~~~----------~i~~~aDa~l 75 (219)
T cd02812 24 SGTDAIMVGGSD-GVS-STLDNVVRLIKRIRRPVPVILFPSNPE----------AVSPGADAYL 75 (219)
T ss_pred cCCCEEEECCcc-chh-hhHHHHHHHHHHhcCCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 557999999854 343 3444444444433 488999998754 4567888776
No 145
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=35.01 E-value=2.9e+02 Score=23.56 Aligned_cols=106 Identities=8% Similarity=-0.052 Sum_probs=56.3
Q ss_pred CCCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC-cchhhhh
Q 020625 59 IPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK-PENWALV 137 (323)
Q Consensus 59 ~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (323)
.|.+|.-+|..+.+ .-.+..+.|++.||+.+....+....-..........+..+.+.|....-....-.. ..+...+
T Consensus 96 ~~~~v~alT~~~~~-~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~ 174 (252)
T PF11019_consen 96 KGIPVIALTARGPN-MEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKI 174 (252)
T ss_pred CCCcEEEEcCCChh-hHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHc
Confidence 45889999999965 556778889999999877531111111001111123344444444332211111110 0111111
Q ss_pred --ccccEEEEeccccccCHHHHHHHHHHHHhCCCe
Q 020625 138 --EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV 170 (323)
Q Consensus 138 --~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
....+++++. ..+.+..+-+.|+..++.
T Consensus 175 ~~~pk~IIfIDD-----~~~nl~sv~~a~k~~~I~ 204 (252)
T PF11019_consen 175 NQSPKKIIFIDD-----NKENLKSVEKACKKSGID 204 (252)
T ss_pred CCCCCeEEEEeC-----CHHHHHHHHHHHhhCCCc
Confidence 2336777774 567788888888888775
No 146
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=34.74 E-value=1.4e+02 Score=25.51 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=19.6
Q ss_pred CCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEe
Q 020625 217 DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVA 252 (323)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~ 252 (323)
.+.+++++.+ ...+ +.+++|.|.+....+
T Consensus 115 ~d~~ea~~~~------~~~~-~rVflt~G~~~l~~f 143 (257)
T COG2099 115 ADIEEAAEAA------KQLG-RRVFLTTGRQNLAHF 143 (257)
T ss_pred cCHHHHHHHH------hccC-CcEEEecCccchHHH
Confidence 4666766666 2233 678899999887654
No 147
>PRK04296 thymidine kinase; Provisional
Probab=34.52 E-value=67 Score=25.90 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=36.3
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
..++|++|...+ ++.+.+.++++.++..++.+++.-...............+++.+|.+.
T Consensus 78 ~~dvviIDEaq~-l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 78 KIDCVLIDEAQF-LDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCEEEEEcccc-CCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 578999997543 456667788899889998876654332211111122345566666665
No 148
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=34.30 E-value=1.9e+02 Score=24.49 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=29.8
Q ss_pred hhhhhccccEEEEeccccc---------c------CHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHH
Q 020625 133 NWALVEKAKYFYIAGFFLT---------V------SPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDAL 188 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~~---------~------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 188 (323)
+.+.++++|+++.||.... . ..+....+++.+.+++.++.+=-+.+...+...+.+
T Consensus 55 ~~~~l~~ad~i~~DG~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l 125 (243)
T PRK03692 55 LRELINAAEYKYADGISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKL 125 (243)
T ss_pred HHHHHHhCCEEecCCHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHH
Confidence 4456677777777775210 0 124566777777666665554444444333333333
No 149
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=34.29 E-value=3.4e+02 Score=24.17 Aligned_cols=88 Identities=6% Similarity=-0.013 Sum_probs=52.8
Q ss_pred cEEEEeeeecCchhHHHHHHHHHcCceeEEeec-CC--CCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhc
Q 020625 62 ATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYED-ES--ASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVE 138 (323)
Q Consensus 62 ~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~-~~--~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (323)
++.+ |.-| ..|+.+++.|++++.....+.. .. ...+..+ .+ .|+ .+..+.+.. ..++
T Consensus 5 ~iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i-~f-~g~-----------~~~V~~l~~----~~f~ 64 (322)
T PRK06901 5 NIAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGI-RF-NNK-----------AVEQIAPEE----VEWA 64 (322)
T ss_pred eEEE-ecCc--HHHHHHHHHHHhcCCchhheeecccccccCCCEE-EE-CCE-----------EEEEEECCc----cCcc
Confidence 4555 5555 5799999999999998875532 11 1222221 11 222 222333433 2357
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
+.|++++ . ..+...++...+.+.|..++-|-
T Consensus 65 ~vDia~f-a-----g~~~s~~~ap~a~~aG~~VIDnS 95 (322)
T PRK06901 65 DFNYVFF-A-----GKMAQAEHLAQAAEAGCIVIDLY 95 (322)
T ss_pred cCCEEEE-c-----CHHHHHHHHHHHHHCCCEEEECC
Confidence 8999888 3 35677888888888887764443
No 150
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=34.19 E-value=92 Score=31.64 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=24.2
Q ss_pred cCchHHHH-HHHHHHhcCCCCcEEEEeeeecCc-hhHHHHHHHHHcCceeE
Q 020625 42 AGGATQNS-IRVAQWMLQIPGATSYIGCIGKDK-FGEEMKKNSKLAGVNVH 90 (323)
Q Consensus 42 ~GG~~~n~-a~~l~~l~g~g~~v~~~~~vG~D~-~g~~i~~~l~~~gi~~~ 90 (323)
.||+|..+ |..|.+ .| .+|.. .|. .... .+.|++.||...
T Consensus 12 ~G~sG~salA~~L~~-~G--~~V~~-----sD~~~~~~-~~~L~~~gi~~~ 53 (809)
T PRK14573 12 IGGIGMSALAHILLD-RG--YSVSG-----SDLSEGKT-VEKLKAKGARFF 53 (809)
T ss_pred ecHHhHHHHHHHHHH-CC--CeEEE-----ECCCCChH-HHHHHHCCCEEe
Confidence 67888777 777765 44 88753 331 1222 345888888753
No 151
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=34.07 E-value=3.1e+02 Score=23.62 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=29.3
Q ss_pred ccCCCCcchHHHHHHHHHhh-----cCCCHHHHHHHHhHHH
Q 020625 270 LVDTNGAGDAFVGGFLSQLV-----QEKPIEECVRAGCYTS 305 (323)
Q Consensus 270 ~~d~tGAGDaf~ag~~~~l~-----~g~~~~~a~~~A~~~A 305 (323)
...-+|+|-+|..-|+-+|. .|.+.++|.+++....
T Consensus 168 ~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~ 208 (272)
T PRK12491 168 VTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAV 208 (272)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34568999999999998885 4899999998887654
No 152
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=34.03 E-value=3.6e+02 Score=24.48 Aligned_cols=96 Identities=5% Similarity=0.007 Sum_probs=52.6
Q ss_pred cEEEEeeeecCchhHHHHHHHH-HcCceeEEee-cCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhcc
Q 020625 62 ATSYIGCIGKDKFGEEMKKNSK-LAGVNVHYYE-DESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEK 139 (323)
Q Consensus 62 ~v~~~~~vG~D~~g~~i~~~l~-~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (323)
++.++|.-| -.|+.+++.|. +.......+. ......+ |+ .. ...+ .....+.+.. .+.+.+
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~--------g~-~~-~f~~--~~~~v~~~~~---~~~~~~ 64 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFSTSQLG--------QA-AP-SFGG--TTGTLQDAFD---IDALKA 64 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEchhhC--------CC-cC-CCCC--CcceEEcCcc---cccccC
Confidence 355555555 57999999888 6666533322 1111111 11 11 0000 0112222221 124678
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCchh
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAPF 179 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 179 (323)
.|+++++. +.+...++...+.+.|.+ +++|-++.+
T Consensus 65 vDivffa~-----g~~~s~~~~p~~~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 65 LDIIITCQ-----GGDYTNEIYPKLRESGWQGYWIDAASSL 100 (366)
T ss_pred CCEEEEcC-----CHHHHHHHHHHHHhCCCCeEEEECChhh
Confidence 99999863 567888888889999974 667776543
No 153
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=33.74 E-value=30 Score=32.19 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=17.6
Q ss_pred cccCCCCcchHHHHHHHHHhh
Q 020625 269 KLVDTNGAGDAFVGGFLSQLV 289 (323)
Q Consensus 269 ~~~d~tGAGDaf~ag~~~~l~ 289 (323)
+++.|+|-||++.||-..+++
T Consensus 427 ~P~sTVGlGDtisa~af~~~l 447 (453)
T PRK14039 427 SPVTTVGLGDTLTAGTFLRLL 447 (453)
T ss_pred CCccccccCccccHHHHHHHH
Confidence 789999999999988766654
No 154
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=33.64 E-value=1e+02 Score=25.71 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=37.1
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
++|++.+-. +. .....++++..|++|.+ +.++|..+. +.++.+++.+|++.+
T Consensus 85 gad~I~~H~---Ea-~~~~~~~l~~Ir~~g~k~GlalnP~T~~------~~i~~~l~~vD~Vlv 138 (223)
T PRK08745 85 GATTISFHP---EA-SRHVHRTIQLIKSHGCQAGLVLNPATPV------DILDWVLPELDLVLV 138 (223)
T ss_pred CCCEEEEcc---cC-cccHHHHHHHHHHCCCceeEEeCCCCCH------HHHHHHHhhcCEEEE
Confidence 567777632 21 23467888889999977 788887654 557788999998874
No 155
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=33.44 E-value=1.6e+02 Score=24.66 Aligned_cols=59 Identities=5% Similarity=-0.000 Sum_probs=38.3
Q ss_pred cEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeC
Q 020625 141 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGN 201 (323)
Q Consensus 141 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n 201 (323)
+.|.++|--+.+.++.+.++++.+++.|..+.++-...... ..+.++.+++..|.+.++
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~--~~~~~~~ll~~~d~v~is 130 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR--YDPVIDELLDVTDLVMLD 130 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCc--chHHHHHHHHhCCEEEEC
Confidence 36777764455677888899999999998877766543210 123455666667765544
No 156
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=33.00 E-value=3.1e+02 Score=25.48 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=25.0
Q ss_pred cccEEEEeccccc-cCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFFLT-VSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|++...... .....+.++.+.++++|+.+++|-.
T Consensus 149 ~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 149 NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECC
Confidence 5677777643211 0113477888889999999888875
No 157
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=32.80 E-value=1e+02 Score=23.89 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=34.0
Q ss_pred cEEEEeccccccCH--HHHHHHHHHHHhC-CCeEEEeCCchhHHHHHH-HHHHhhcCCCcEEE
Q 020625 141 KYFYIAGFFLTVSP--DSIQLVAEHAAAN-NKVFMMNLSAPFICEFFK-DALEKVLPYMDYIF 199 (323)
Q Consensus 141 ~~v~i~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~-~~~~~~l~~~dvl~ 199 (323)
..|.++|--+.+.+ +.+.++++.+++. +...+++.....+.+... ...+++++++|+++
T Consensus 65 ~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~li 127 (154)
T TIGR02491 65 DGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYIDVLV 127 (154)
T ss_pred CeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCCEEE
Confidence 45666664444433 7888999999875 554344444443221111 11246889999865
No 158
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.11 E-value=1e+02 Score=25.52 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred hhhhhccccEEEEeccccccCHHHHHHHHHHHHh-CCCeEEEeCCchh-------------HHHHHHHHHHhhcCCCcEE
Q 020625 133 NWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAA-NNKVFMMNLSAPF-------------ICEFFKDALEKVLPYMDYI 198 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~-------------~~~~~~~~~~~~l~~~dvl 198 (323)
..++.+.+|+|++. ++.+.+..+++..+. .+-++++|+..+. +.....+.+.++++.+.|+
T Consensus 54 ~~dA~~~aDVVvLA-----VP~~a~~~v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVV 128 (211)
T COG2085 54 NEDAAALADVVVLA-----VPFEAIPDVLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVV 128 (211)
T ss_pred hHHHHhcCCEEEEe-----ccHHHHHhHHHHHHHHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchh
Confidence 44667889999985 566666666666654 4446667776652 1123567788999999999
Q ss_pred E-eCHHHHHHHHh
Q 020625 199 F-GNETEARTFSK 210 (323)
Q Consensus 199 ~-~n~~e~~~l~~ 210 (323)
+ +|.-.+..+..
T Consensus 129 kAFn~i~a~~l~~ 141 (211)
T COG2085 129 KAFNTIPAAVLAD 141 (211)
T ss_pred hhhcccCHHHhcc
Confidence 8 77777777643
No 159
>PRK08005 epimerase; Validated
Probab=31.73 E-value=1.2e+02 Score=25.14 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=36.4
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
++|++.+-- +. .+...++++..|++|.+ +.++|..+. +.++.+++.+|.+.+
T Consensus 81 gad~It~H~---Ea-~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~------~~i~~~l~~vD~Vlv 134 (210)
T PRK08005 81 RPGWIFIHA---ES-VQNPSEILADIRAIGAKAGLALNPATPL------LPYRYLALQLDALMI 134 (210)
T ss_pred CCCEEEEcc---cC-ccCHHHHHHHHHHcCCcEEEEECCCCCH------HHHHHHHHhcCEEEE
Confidence 567776632 21 23467788899999977 778887654 557788889998873
No 160
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=31.14 E-value=67 Score=24.80 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=32.5
Q ss_pred hhhhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchh
Q 020625 133 NWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPF 179 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 179 (323)
..+.+..+|+++++|.++ -...+..+++.+++....+.+=++.+.
T Consensus 56 ~~~~l~~aD~viiTGsTl--vN~Ti~~iL~~~~~~~~vil~GpS~~~ 100 (147)
T PF04016_consen 56 AEEILPWADVVIITGSTL--VNGTIDDILELARNAREVILYGPSAPL 100 (147)
T ss_dssp HHHHGGG-SEEEEECHHC--CTTTHHHHHHHTTTSSEEEEESCCGGS
T ss_pred HHHHHccCCEEEEEeeee--ecCCHHHHHHhCccCCeEEEEecCchh
Confidence 457789999999999764 346788888888855455667776665
No 161
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=30.99 E-value=1.6e+02 Score=27.88 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=52.6
Q ss_pred cCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhh
Q 020625 57 LQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWAL 136 (323)
Q Consensus 57 ~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (323)
+|+|.++.|+|.+= -+.+.+.|+++ .+.+.+. -.||-.|-+...+|+...+..+...+ .+..+..
T Consensus 339 LGfGfRcGFLGlLH----meiiqERLeRE-f~ldlI~--TaPsV~Y~v~~~~g~~~~i~NPs~~P--~~~~I~~------ 403 (603)
T COG0481 339 LGFGFRCGFLGLLH----MEIIQERLERE-FDLDLIT--TAPSVVYKVELTDGEEIEVDNPSDLP--DPNKIEE------ 403 (603)
T ss_pred ccCceeehhhhHHH----HHHHHHHHHHh-hCcceEe--cCCceEEEEEEcCCcEEEecChHhCC--Chhhhhe------
Confidence 67889999988754 35567777643 3444443 24677777777788766555433222 1122221
Q ss_pred hccccEEEEeccccccCHHHHHHHHHHHH-hCCCeEEE
Q 020625 137 VEKAKYFYIAGFFLTVSPDSIQLVAEHAA-ANNKVFMM 173 (323)
Q Consensus 137 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 173 (323)
+.+ -++-.. ...+.+.+-.+++.|. ++|....+
T Consensus 404 i~E-P~v~~~---ii~P~eylG~vm~Lcq~kRG~~~~m 437 (603)
T COG0481 404 IEE-PYVKAT---IITPQEYLGNVMELCQEKRGIQIDM 437 (603)
T ss_pred eeC-ceeEEE---EeCcHHHHHHHHHHHHHhcCceecc
Confidence 111 122211 1245677777777665 35555433
No 162
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=30.98 E-value=4.2e+02 Score=24.27 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=55.5
Q ss_pred HHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCc
Q 020625 52 VAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKP 131 (323)
Q Consensus 52 ~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 131 (323)
++.++...|.+|..+. +..+|+++.+.++.+|.+...+..+-. ..+++++++.
T Consensus 72 av~sl~~pgdkVLv~~---nG~FG~R~~~ia~~~g~~v~~~~~~wg-----------------------~~v~p~~v~~- 124 (383)
T COG0075 72 AVASLVEPGDKVLVVV---NGKFGERFAEIAERYGAEVVVLEVEWG-----------------------EAVDPEEVEE- 124 (383)
T ss_pred HHHhccCCCCeEEEEe---CChHHHHHHHHHHHhCCceEEEeCCCC-----------------------CCCCHHHHHH-
Confidence 4444666667766553 336899999999999999888753311 1123333331
Q ss_pred chhhhhcccc---EEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch
Q 020625 132 ENWALVEKAK---YFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP 178 (323)
Q Consensus 132 ~~~~~~~~~~---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 178 (323)
..+.-.+.+ ++|.+..+-.+ .-+.++.+.+++++..+++|.-..
T Consensus 125 -~L~~~~~~~~V~~vH~ETSTGvl--npl~~I~~~~k~~g~l~iVDaVsS 171 (383)
T COG0075 125 -ALDKDPDIKAVAVVHNETSTGVL--NPLKEIAKAAKEHGALLIVDAVSS 171 (383)
T ss_pred -HHhcCCCccEEEEEeccCccccc--CcHHHHHHHHHHcCCEEEEEeccc
Confidence 111111233 33333222111 246788888889998888887443
No 163
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.17 E-value=1.7e+02 Score=19.40 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCcEEEEeeeecC------chhHHHHHHHHHcCceeEE
Q 020625 48 NSIRVAQWMLQIPGATSYIGCIGKD------KFGEEMKKNSKLAGVNVHY 91 (323)
Q Consensus 48 n~a~~l~~l~g~g~~v~~~~~vG~D------~~g~~i~~~l~~~gi~~~~ 91 (323)
=+|..+++ +|.++.++..-..= .....+.+.|++.||+...
T Consensus 13 E~A~~l~~---~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 13 ELAEALAE---LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHH---TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHH---hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 34444444 45999998654421 2456688899999998766
No 164
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=30.11 E-value=3e+02 Score=22.26 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=42.9
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHH--------HHHHHHhh-cCCCcEEEeCHHHHHH
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEF--------FKDALEKV-LPYMDYIFGNETEART 207 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~~~~~~~~-l~~~dvl~~n~~e~~~ 207 (323)
..|++++-+.. ....+..+.+..++.|.++.+|+....|.+. +...-+.+ ..++|.++....+.+.
T Consensus 92 ~~~ii~ilg~~---~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~ 166 (185)
T PF09314_consen 92 KYDIILILGYG---IGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQD 166 (185)
T ss_pred cCCEEEEEcCC---ccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHH
Confidence 35688876532 2456777888888889999999999888643 11111222 3578888875555443
No 165
>PRK08114 cystathionine beta-lyase; Provisional
Probab=29.96 E-value=2.3e+02 Score=26.07 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=26.5
Q ss_pred eecCchHHHHHHHHHHhcCCCCcEEEEeeeecCchh---HHHHHHHHHcCceeEEee
Q 020625 40 YIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFG---EEMKKNSKLAGVNVHYYE 93 (323)
Q Consensus 40 ~~~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g---~~i~~~l~~~gi~~~~~~ 93 (323)
..+.|.+...+..++ +++.|..+... ++.++ +.+.+.+++.||++.++.
T Consensus 82 ~~~SGmaAi~~~~~~-ll~~GD~Vv~~----~~~Yg~t~~l~~~~l~~~Gi~v~~vd 133 (395)
T PRK08114 82 LYPCGAAAVANAILA-FVEQGDHVLMT----GTAYEPTQDFCSKILSKLGVTTTWFD 133 (395)
T ss_pred EEhHHHHHHHHHHHH-HcCCCCEEEEe----CCCcHHHHHHHHHHHHhcCcEEEEEC
Confidence 455666666665555 46656554322 22222 233455677788776653
No 166
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=29.86 E-value=36 Score=27.10 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=36.1
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHH----hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHH
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAA----ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEAR 206 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~ 206 (323)
.+.|++++...... .+..+.......+ -..+..++|...........+.+..-+..+|++++|+-+.-
T Consensus 83 ~~~d~IiIE~sG~a-~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 83 ERPDRIIIETSGLA-DPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp GC-SEEEEEEECSS-GGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGH
T ss_pred CCcCEEEECCcccc-ccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccC
Confidence 36799998865432 2333311111111 12244677885432223345567788999999999997643
No 167
>PLN02242 methionine gamma-lyase
Probab=29.60 E-value=4.2e+02 Score=24.46 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=22.7
Q ss_pred ccEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 140 AKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 140 ~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
.++|+++.... ......+.++.+.++++++.+++|-
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDe 200 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDN 200 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEEC
Confidence 67777775331 1112346777788888888877775
No 168
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.96 E-value=1.5e+02 Score=24.80 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=36.7
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCC--e--EEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNK--V--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
++|++.+-- +. .....++++..++.|. + +.++|..+. +.++.+++.+|++.+
T Consensus 91 Gad~It~H~---Ea-~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~------~~i~~~l~~vD~VLi 146 (228)
T PRK08091 91 GADIVTLQV---EQ-THDLALTIEWLAKQKTTVLIGLCLCPETPI------SLLEPYLDQIDLIQI 146 (228)
T ss_pred CCCEEEEcc---cC-cccHHHHHHHHHHCCCCceEEEEECCCCCH------HHHHHHHhhcCEEEE
Confidence 567776632 21 2346778888899987 5 788887654 557888999998873
No 169
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=28.69 E-value=1.7e+02 Score=26.73 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=21.8
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCC-CeEEEeC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANN-KVFMMNL 175 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~d~ 175 (323)
+.++|++..-. +.+.-..+..+.+.++++| +.+++|-
T Consensus 140 ~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDn 178 (386)
T PF01053_consen 140 NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDN 178 (386)
T ss_dssp TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEEC
T ss_pred cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeec
Confidence 56777776533 1112245777888888888 8877775
No 170
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=28.68 E-value=60 Score=24.38 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.1
Q ss_pred cCCCCcchHHHH-HHHHHhhcCCCHHHHHHHHhHHHH
Q 020625 271 VDTNGAGDAFVG-GFLSQLVQEKPIEECVRAGCYTSH 306 (323)
Q Consensus 271 ~d~tGAGDaf~a-g~~~~l~~g~~~~~a~~~A~~~Aa 306 (323)
+-|-|||-+..+ .++.-|.+|++++|++..-|.--+
T Consensus 84 FKTFGCGSAIASSS~aTewvkgkt~dea~kIkNteIA 120 (157)
T KOG3361|consen 84 FKTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEIA 120 (157)
T ss_pred eeecccchHhhhhHHHHHHHccccHHHHHhcccHHHH
Confidence 467899988765 577788999999999987665443
No 171
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=28.53 E-value=4.4e+02 Score=23.69 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=51.8
Q ss_pred CCcEEEEeeeecCchhHHHHHHHHHcCceeEEee-c-CCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhh
Q 020625 60 PGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYE-D-ESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALV 137 (323)
Q Consensus 60 g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~-~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (323)
+.++.++|.-| ..|..+++.|.+.+-....+. . ..+..+..+-. .+ . .+..+++.. +.+
T Consensus 7 ~~kVaVvGAtG--~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----------~~~v~~~~~----~~~ 67 (344)
T PLN02383 7 GPSVAIVGVTG--AVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----------DYTVEELTE----DSF 67 (344)
T ss_pred CCeEEEEcCCC--hHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----------eeEEEeCCH----HHH
Confidence 36788888777 469999999987544332221 1 11112221111 11 1 111222221 335
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchh
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPF 179 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 179 (323)
.++|+++++ .+.+...++...+.+.|.+ ++|.+..+
T Consensus 68 ~~~D~vf~a-----~p~~~s~~~~~~~~~~g~~-VIDlS~~f 103 (344)
T PLN02383 68 DGVDIALFS-----AGGSISKKFGPIAVDKGAV-VVDNSSAF 103 (344)
T ss_pred cCCCEEEEC-----CCcHHHHHHHHHHHhCCCE-EEECCchh
Confidence 689999875 3556777777777677754 46776543
No 172
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=28.45 E-value=3e+02 Score=21.82 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=43.1
Q ss_pred ccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEEe----CHHHHHHHHhhcC
Q 020625 140 AKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFG----NETEARTFSKVQG 213 (323)
Q Consensus 140 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~----n~~e~~~l~~~~~ 213 (323)
.+.+.++|--+.+.++ +.++++.+++.|..+.+...... .+.++.+++ ..|.+.+ ..++...+.+..+
T Consensus 63 ~~~i~~sGGEPll~~~-l~~li~~~~~~g~~v~i~TNg~~-----~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~ 136 (191)
T TIGR02495 63 IDGVVITGGEPTLQAG-LPDFLRKVRELGFEVKLDTNGSN-----PRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEK 136 (191)
T ss_pred CCeEEEECCcccCcHh-HHHHHHHHHHCCCeEEEEeCCCC-----HHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCC
Confidence 3566676644555566 77888999888877766654432 122334433 2465554 3333445554322
Q ss_pred CCCCCHHHHHHHH
Q 020625 214 WETDDVEEIALKL 226 (323)
Q Consensus 214 ~~~~~~~~~~~~l 226 (323)
...+...+.++.+
T Consensus 137 ~~~~~~~~~i~~l 149 (191)
T TIGR02495 137 NGSNNILKSLEIL 149 (191)
T ss_pred chHHHHHHHHHHH
Confidence 1111344555555
No 173
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=28.32 E-value=1.4e+02 Score=24.80 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=36.7
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
++|++.+-- + ..+...++++..|+.|.+ +.++|..+. +.++.+++.+|.+.+
T Consensus 81 gad~i~~H~---E-a~~~~~~~l~~ik~~g~k~GlalnP~Tp~------~~i~~~l~~~D~vlv 134 (220)
T PRK08883 81 GASMITFHV---E-ASEHVDRTLQLIKEHGCQAGVVLNPATPL------HHLEYIMDKVDLILL 134 (220)
T ss_pred CCCEEEEcc---c-CcccHHHHHHHHHHcCCcEEEEeCCCCCH------HHHHHHHHhCCeEEE
Confidence 567776632 2 223467888889999976 677887654 557788999998873
No 174
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=27.92 E-value=1.4e+02 Score=24.68 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEe
Q 020625 49 SIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYY 92 (323)
Q Consensus 49 ~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~ 92 (323)
..-++.+|-+.+..|.|+|.--.+.. +.+.+.|++.|++++--
T Consensus 28 a~eAl~rLr~~~~kVkFvTNttk~Sk-~~l~~rL~rlgf~v~ee 70 (262)
T KOG3040|consen 28 AVEALKRLRDQHVKVKFVTNTTKESK-RNLHERLQRLGFDVSEE 70 (262)
T ss_pred HHHHHHHHHhcCceEEEEecCcchhH-HHHHHHHHHhCCCccHH
Confidence 34456665446799999998777643 66889999999998764
No 175
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=27.92 E-value=2.5e+02 Score=23.79 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=26.0
Q ss_pred ccCCCCcchHHHHHHHHHhh-----cCCCHHHHHHHHhHH
Q 020625 270 LVDTNGAGDAFVGGFLSQLV-----QEKPIEECVRAGCYT 304 (323)
Q Consensus 270 ~~d~tGAGDaf~ag~~~~l~-----~g~~~~~a~~~A~~~ 304 (323)
....+|+|=+|...|+.++. .|.+.+++.+++...
T Consensus 166 ~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~ 205 (267)
T PRK11880 166 VTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQT 205 (267)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34457899999988887774 488888888766554
No 176
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=27.53 E-value=2.2e+02 Score=22.55 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=36.6
Q ss_pred EEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceE
Q 020625 171 FMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVV 250 (323)
Q Consensus 171 ~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~ 250 (323)
+.+|.+-+. +...+..+.+.+.++.++.++ +.+++..+.+... ..-...-++++|+.|.+
T Consensus 3 v~iD~~v~d----~~~L~~~l~~~~~v~~ld~~~------------d~~~qI~~~L~~~----~~i~~lhivsHG~~G~l 62 (165)
T PF14252_consen 3 VFIDSRVED----YESLLAGLPPGVEVVILDPSR------------DGLEQIAQALAGY----QNIDALHIVSHGSPGAL 62 (165)
T ss_pred EEEeCCCCC----HHHHHhcCcCCCEEEEEeCCC------------chHHHHHHHHhcC----CCCceEEEEcCCCcceE
Confidence 455665544 334445566777777765442 3355555555321 11245678889999988
Q ss_pred Eee
Q 020625 251 VAQ 253 (323)
Q Consensus 251 ~~~ 253 (323)
...
T Consensus 63 ~LG 65 (165)
T PF14252_consen 63 QLG 65 (165)
T ss_pred EEC
Confidence 764
No 177
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=27.24 E-value=4.4e+02 Score=24.30 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=23.9
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|+++... +......+.++.+.++++++.+++|-.
T Consensus 142 ~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t 180 (418)
T TIGR01326 142 NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNT 180 (418)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 46677776422 111112367888888899988888864
No 178
>PRK07324 transaminase; Validated
Probab=26.95 E-value=4.7e+02 Score=23.51 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=24.8
Q ss_pred cccEEEEeccc-c---ccCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 139 KAKYFYIAGFF-L---TVSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 139 ~~~~v~i~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
+.++++++.-+ + ..+.+.+.++++.|++++..++.|-
T Consensus 153 ~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 153 NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 45677776322 1 1355678888888888888877763
No 179
>PRK15482 transcriptional regulator MurR; Provisional
Probab=26.72 E-value=2.8e+02 Score=23.85 Aligned_cols=95 Identities=14% Similarity=0.016 Sum_probs=55.5
Q ss_pred hhhhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE-eCHHHHHHHHhh
Q 020625 133 NWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF-GNETEARTFSKV 211 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~-~n~~e~~~l~~~ 211 (323)
..+.+.+++-+++-|.. .+.-....+.....+.|..+.+...... .......+..-|+++ ++..
T Consensus 128 ~~~~i~~A~~I~i~G~G--~S~~~A~~l~~~l~~~g~~~~~~~d~~~-----~~~~~~~~~~~Dv~i~iS~s-------- 192 (285)
T PRK15482 128 IIEVISKAPFIQITGLG--GSALVGRDLSFKLMKIGYRVACEADTHV-----QATVSQALKKGDVQIAISYS-------- 192 (285)
T ss_pred HHHHHHhCCeeEEEEeC--hhHHHHHHHHHHHHhCCCeeEEeccHhH-----HHHHHhcCCCCCEEEEEeCC--------
Confidence 45667788888877643 3344556666666677776655332111 111233456667877 3221
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceE
Q 020625 212 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVV 250 (323)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~ 250 (323)
|. ..+..++++.. ...|.+.+.||.....-+
T Consensus 193 -g~-t~~~~~~~~~a------~~~g~~iI~IT~~~~s~l 223 (285)
T PRK15482 193 -GS-KKEIVLCAEAA------RKQGATVIAITSLADSPL 223 (285)
T ss_pred -CC-CHHHHHHHHHH------HHCCCEEEEEeCCCCCch
Confidence 11 23456777777 667899999997655444
No 180
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=26.47 E-value=90 Score=29.31 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCeEEEeCCchhH---HHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCc
Q 020625 155 DSIQLVAEHAAANNKVFMMNLSAPFI---CEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPK 231 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~ 231 (323)
....++.+...++|.++..|-....+ .+...|.++.++..++++++.+.-+ .|+ +.+.++....+.++
T Consensus 116 ~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTa-VLT------P~E~~~lf~~l~~l-- 186 (501)
T COG3845 116 QARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTA-VLT------PQEADELFEILRRL-- 186 (501)
T ss_pred HHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcc-cCC------HHHHHHHHHHHHHH--
Confidence 45566777778888776444322111 2346777889999999999877632 121 23344444333332
Q ss_pred cccCCccEEEEeeC
Q 020625 232 ASEIRKRTAVITQG 245 (323)
Q Consensus 232 ~~~~~~~~vvit~G 245 (323)
.+.|...++||+-
T Consensus 187 -~~~G~tIi~ITHK 199 (501)
T COG3845 187 -AAEGKTIIFITHK 199 (501)
T ss_pred -HHCCCEEEEEecc
Confidence 6678888888853
No 181
>PRK07050 cystathionine beta-lyase; Provisional
Probab=26.18 E-value=5.1e+02 Score=23.66 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=26.0
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|+++.-. +......+.++.+.|+++++.+++|-.
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECC
Confidence 45777766422 223456788888888889988877764
No 182
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=26.17 E-value=3.4e+02 Score=24.76 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=27.5
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCchh
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAPF 179 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 179 (323)
..++++|++++=|..+..........++.++++|.+ +.+|++...
T Consensus 148 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 148 AEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 457789998887765422222333445666677765 667986544
No 183
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=26.06 E-value=2e+02 Score=23.65 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=35.8
Q ss_pred HHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEe
Q 020625 54 QWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV 107 (323)
Q Consensus 54 ~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~ 107 (323)
.+|++.|..+..+..-..| -..+...++++||+...+.......+.+.+++.
T Consensus 25 k~L~k~g~~l~~i~i~~~~--lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~Fk 76 (204)
T PF12687_consen 25 KKLLKQGKGLKNIEITDED--LKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFK 76 (204)
T ss_pred HHHHhcCCCceEEecCHhh--HHHHHHHHHHcCCceEEeeccCCCCCcEEEEEE
Confidence 3344445667777654444 567889999999999998765555556666664
No 184
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.92 E-value=1.9e+02 Score=28.62 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=26.7
Q ss_pred hhhccccEEEEecccccc-CHHHHHHHHHHHHhC-CCe-EEEeCCchh
Q 020625 135 ALVEKAKYFYIAGFFLTV-SPDSIQLVAEHAAAN-NKV-FMMNLSAPF 179 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~-~~~~~~~~~~~~~~~-~~~-~~~d~~~~~ 179 (323)
..++++|++++-|.++.. .+-....+ ..+++. |.+ +++|++...
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i-~~Ak~~~GaklIvVDPR~t~ 211 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWI-LEAKEKNGAKLIVVDPRFTR 211 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHH-HHHHHcCCCeEEEEcCCCCc
Confidence 447889999988765422 23233344 445554 754 789997644
No 185
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=25.54 E-value=98 Score=25.41 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=26.6
Q ss_pred CcchHHHHHHHHHhhcCCCHHHHHHHHhH
Q 020625 275 GAGDAFVGGFLSQLVQEKPIEECVRAGCY 303 (323)
Q Consensus 275 GAGDaf~ag~~~~l~~g~~~~~a~~~A~~ 303 (323)
--||.+.+-.-++...|.++++|++.+|.
T Consensus 165 E~GDlLFalvn~aR~~~idpE~ALr~an~ 193 (204)
T PRK12333 165 GVAEALWAVVAWARAEGIDPEIALRERTE 193 (204)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57999999999999999999999999875
No 186
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=25.01 E-value=2.5e+02 Score=19.89 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=32.7
Q ss_pred hccccEEEEeccccc-cCHHHHHHHHHHHHhCC---CeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 137 VEKAKYFYIAGFFLT-VSPDSIQLVAEHAAANN---KVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 137 ~~~~~~v~i~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
.+++|+++++.=... -..+-....++.+++.+ .++++--.-+ +...+.+.+..+.+|+++
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~a---q~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMA---QRYGEELKKEFPEVDLVV 97 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCcc---ccChHHHHhhCCCeEEEe
Confidence 357898888643321 12222333334444433 5555554422 224566788888899886
No 187
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=24.94 E-value=1.6e+02 Score=23.29 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCceeEEee---c--CCCCceeEEEEEeCCccceeeccccc-------ccCCccc---CCCcchhhhhccc
Q 020625 76 EEMKKNSKLAGVNVHYYE---D--ESASTGTCAVCVVGGERSLVANLSAA-------NCYKSEH---LKKPENWALVEKA 140 (323)
Q Consensus 76 ~~i~~~l~~~gi~~~~~~---~--~~~~t~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~~ 140 (323)
..+.+.|++.|+...++. . .+...+..++-+.+|++..+...... ..+..+. +..+.....+..+
T Consensus 17 ~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~ 96 (168)
T PF03266_consen 17 KKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSS 96 (168)
T ss_dssp HHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCC
T ss_pred HHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHHHHHHHHHHHHhhcCCC
Confidence 345566666688877752 1 22333333333336665443322200 0111111 1112223345788
Q ss_pred cEEEEecccc-ccC-HHHHHHHHHHHHhCCCeEEEeCCc
Q 020625 141 KYFYIAGFFL-TVS-PDSIQLVAEHAAANNKVFMMNLSA 177 (323)
Q Consensus 141 ~~v~i~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~d~~~ 177 (323)
|++++|=..+ +.. +.....+.+.. ..+.+++.-++.
T Consensus 97 ~liviDEIG~mEl~~~~F~~~v~~~l-~s~~~vi~vv~~ 134 (168)
T PF03266_consen 97 DLIVIDEIGKMELKSPGFREAVEKLL-DSNKPVIGVVHK 134 (168)
T ss_dssp HEEEE---STTCCC-CHHHHHHHHHH-CTTSEEEEE--S
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHH-cCCCcEEEEEec
Confidence 9999997653 333 34444444444 356666655543
No 188
>PRK05939 hypothetical protein; Provisional
Probab=24.51 E-value=5.5e+02 Score=23.49 Aligned_cols=38 Identities=0% Similarity=0.127 Sum_probs=25.1
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|+++... +......+.++.+.|+++++.+++|-.
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 46677776422 111224577888888999998888864
No 189
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.44 E-value=4.9e+02 Score=24.13 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=63.4
Q ss_pred eeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEEEEec
Q 020625 68 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAG 147 (323)
Q Consensus 68 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 147 (323)
.+|....|+.+...|.+.|+..-.+- ++ | -+|..-. ...+..+-+...+..+.+..+|+|+.+.
T Consensus 183 vIGAGem~~lva~~L~~~g~~~i~Ia--NR-T---------~erA~~L----a~~~~~~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 183 VIGAGEMGELVAKHLAEKGVKKITIA--NR-T---------LERAEEL----AKKLGAEAVALEELLEALAEADVVISST 246 (414)
T ss_pred EEcccHHHHHHHHHHHhCCCCEEEEE--cC-C---------HHHHHHH----HHHhCCeeecHHHHHHhhhhCCEEEEec
Confidence 36666789999999999988554432 11 1 1111100 0011111222223446789999999875
Q ss_pred ccc--ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHh
Q 020625 148 FFL--TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSK 210 (323)
Q Consensus 148 ~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~ 210 (323)
..+ .+..+.+...++.- ...+++|+..|.- .-...-+.-++...+.++++.+..
T Consensus 247 sa~~~ii~~~~ve~a~~~r---~~~livDiavPRd------ie~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 247 SAPHPIITREMVERALKIR---KRLLIVDIAVPRD------VEPEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred CCCccccCHHHHHHHHhcc---cCeEEEEecCCCC------CCccccCcCCeEEEehhhHHHHHH
Confidence 432 23444444444322 2268888877651 112233345677788888777643
No 190
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=24.42 E-value=1.3e+02 Score=18.04 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=21.9
Q ss_pred EeCHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEE
Q 020625 199 FGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAV 241 (323)
Q Consensus 199 ~~n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 241 (323)
+++.+|+..|+|. ......++.| ...|...++
T Consensus 2 fLT~~El~elTG~-----k~~~~Q~~~L------~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGY-----KRPSKQIRWL------RRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCC-----CCHHHHHHHH------HHCCCeeEE
Confidence 5788999999984 3566677777 455655443
No 191
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=24.29 E-value=5.2e+02 Score=23.13 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=50.0
Q ss_pred CcEEEEeeeecCchhHHHHHHHHHcCceeEEee-c-CCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhc
Q 020625 61 GATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYE-D-ESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVE 138 (323)
Q Consensus 61 ~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~-~-~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (323)
.++.++|.-| ..|..+++.|.+.+.....+. . .....+..+ ...+ ..+..+.++. ..++
T Consensus 5 ~~IaIvGATG--~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l-----------~~~~--~~l~~~~~~~----~~~~ 65 (336)
T PRK05671 5 LDIAVVGATG--TVGEALVQILEERDFPVGTLHLLASSESAGHSV-----------PFAG--KNLRVREVDS----FDFS 65 (336)
T ss_pred CEEEEEccCC--HHHHHHHHHHhhCCCCceEEEEEECcccCCCee-----------ccCC--cceEEeeCCh----HHhc
Confidence 3566666666 569999999986554333321 1 111112111 1111 1122222221 1256
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP 178 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 178 (323)
+.|++++. .+.+....++..+.+.|.+ ++|.++.
T Consensus 66 ~vD~vFla-----~p~~~s~~~v~~~~~~G~~-VIDlS~~ 99 (336)
T PRK05671 66 QVQLAFFA-----AGAAVSRSFAEKARAAGCS-VIDLSGA 99 (336)
T ss_pred CCCEEEEc-----CCHHHHHHHHHHHHHCCCe-EEECchh
Confidence 88999885 3566777788888888875 4666543
No 192
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=24.17 E-value=1e+02 Score=26.29 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHhhcCCCHHHHHHHHhH
Q 020625 276 AGDAFVGGFLSQLVQEKPIEECVRAGCY 303 (323)
Q Consensus 276 AGDaf~ag~~~~l~~g~~~~~a~~~A~~ 303 (323)
.||.+.+-+-.+...|.++++|++.++.
T Consensus 185 lGDlLFalvnlAr~~giDpE~ALr~a~~ 212 (248)
T TIGR00444 185 MGDLLFATVNLARHLKTDAEIALQKANE 212 (248)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5999999999999999999999998775
No 193
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=24.10 E-value=1.8e+02 Score=24.93 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHH
Q 020625 48 NSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKL 84 (323)
Q Consensus 48 n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~ 84 (323)
|.+..+..|...|.++..++.||+| -..|.+.++.
T Consensus 22 Na~~la~~L~~~G~~v~~~~~VgD~--~~~I~~~l~~ 56 (255)
T COG1058 22 NAAFLADELTELGVDLARITTVGDN--PDRIVEALRE 56 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEecCCC--HHHHHHHHHH
Confidence 3443444443456999999999998 3455665553
No 194
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=23.85 E-value=1.3e+02 Score=21.68 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCCCcchHHHHHHHHHhhc-----CCCHHHHHHHHhHH
Q 020625 272 DTNGAGDAFVGGFLSQLVQ-----EKPIEECVRAGCYT 304 (323)
Q Consensus 272 d~tGAGDaf~ag~~~~l~~-----g~~~~~a~~~A~~~ 304 (323)
..+|+|-+|.+.|+-++.+ |.+.++|-+++...
T Consensus 11 alsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t 48 (107)
T PF14748_consen 11 ALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQT 48 (107)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4589999999999988854 88888887766543
No 195
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=23.53 E-value=2.9e+02 Score=23.85 Aligned_cols=66 Identities=9% Similarity=0.248 Sum_probs=32.8
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHh-----CCCeEEEeCCchhHHHHHHHHHHhhcCC----CcEEEeCHHH
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAA-----NNKVFMMNLSAPFICEFFKDALEKVLPY----MDYIFGNETE 204 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~l~~----~dvl~~n~~e 204 (323)
..++...|+++++ ++++.+-++++.+.. ..+-+.+|.++........+.+..+-.. .+++|+..++
T Consensus 19 ~~lEDlGyycvDN----LPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~ 93 (286)
T COG1660 19 RVLEDLGYYCVDN----LPPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADD 93 (286)
T ss_pred HHHHhcCeeeecC----CCHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECch
Confidence 3455666776663 556666666553321 2233667776654333333333333222 5666644333
No 196
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=23.52 E-value=3.3e+02 Score=22.13 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=36.5
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
.++|++.+++..-..+ +.+.++++..++....++-|.+... +.....--.+|++-.
T Consensus 63 aGadIIAlDaT~R~Rp-~~l~~li~~i~~~~~l~MADist~e------e~~~A~~~G~D~I~T 118 (192)
T PF04131_consen 63 AGADIIALDATDRPRP-ETLEELIREIKEKYQLVMADISTLE------EAINAAELGFDIIGT 118 (192)
T ss_dssp CT-SEEEEE-SSSS-S-S-HHHHHHHHHHCTSEEEEE-SSHH------HHHHHHHTT-SEEE-
T ss_pred cCCCEEEEecCCCCCC-cCHHHHHHHHHHhCcEEeeecCCHH------HHHHHHHcCCCEEEc
Confidence 5789999998665555 8899999999998888999998633 333333346888874
No 197
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=23.39 E-value=72 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=22.4
Q ss_pred EEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHH
Q 020625 171 FMMNLSAPFICEFFKDALEKVLPYMDYIFGNET 203 (323)
Q Consensus 171 ~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~ 203 (323)
|.+|++.+. -++.+.+++..+||++-|-.
T Consensus 1 V~lDl~~~~----gr~~l~~L~~~ADV~i~n~r 29 (191)
T PF02515_consen 1 VALDLKSPE----GRAALRRLLATADVVIENFR 29 (191)
T ss_dssp EEEETTSHH----HHHHHHHHHHT-SEEEEESS
T ss_pred CEeeCcCHH----HHHHHHHHHHhCCEEEECCc
Confidence 467888776 77889999999999996644
No 198
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=23.35 E-value=5.7e+02 Score=23.28 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=23.9
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|+++... +......+.++.+.++++++.+++|-.
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a 182 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNT 182 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 46777776432 111122366778888888988888764
No 199
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.95 E-value=4.5e+02 Score=21.90 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=77.0
Q ss_pred hccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCC-chhHHHHHHHHHHhhcCCC--cEEEeCHHHHHHHHhhcC
Q 020625 137 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLS-APFICEFFKDALEKVLPYM--DYIFGNETEARTFSKVQG 213 (323)
Q Consensus 137 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~l~~~--dvl~~n~~e~~~l~~~~~ 213 (323)
+.++|+++.= .+.|+....+.+.+++.|.+.++=+. .+. ...++.+++.+... ++.++. -+..|-.
T Consensus 49 i~~~Dl~I~y----~lHPDl~~~l~~~~~e~g~kavIvp~~~~~--~g~~~~lk~~~e~~gi~~~~P~--~~CsL~~--- 117 (217)
T PF02593_consen 49 IPEADLLIAY----GLHPDLTYELPEIAKEAGVKAVIVPSESPK--PGLRRQLKKQLEEFGIEVEFPK--PFCSLEE--- 117 (217)
T ss_pred CCCCCEEEEe----ccCchhHHHHHHHHHHcCCCEEEEecCCCc--cchHHHHHHHHHhcCceeecCc--cccccCC---
Confidence 7889998863 46788899999999988877443332 111 11344565555543 454442 2222211
Q ss_pred CCCCCHHHHHHHHhcCCccccCCccEEEEeeCCCceEEeeCCeeeEEeceeCCCCcccCCCCcchHHHHHHHHHhhcCCC
Q 020625 214 WETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP 293 (323)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G~~G~~~~~~~~~~~~~~~~~~~~~~~d~tGAGDaf~ag~~~~l~~g~~ 293 (323)
.......+.++.+ |...+=|... +++...+ +|+-..=||-|+ +++--+.|++
T Consensus 118 ~~~p~i~~F~~~f---------GkP~~ei~v~--------~~~I~~V--------~VlR~aPCGsT~---~vAk~l~G~~ 169 (217)
T PF02593_consen 118 NGNPQIDEFAEYF---------GKPKVEIEVE--------NGKIKDV--------KVLRSAPCGSTW---FVAKRLIGKE 169 (217)
T ss_pred CCChhHHHHHHHh---------CCceEEEEec--------CCcEEEE--------EEEecCCCccHH---HHHHHhcCCc
Confidence 1123456666665 4333333322 2222221 344444567665 7888899999
Q ss_pred HHHHHHHHhHHHHHHhhhcCc
Q 020625 294 IEECVRAGCYTSHVIIQRSGC 314 (323)
Q Consensus 294 ~~~a~~~A~~~Aa~~~~~~G~ 314 (323)
++++...+ ++.++++-+
T Consensus 170 ~~d~~~~~----g~~~q~YPC 186 (217)
T PF02593_consen 170 VEDAPEKA----GLAHQHYPC 186 (217)
T ss_pred cchhhhhh----hhhheeccc
Confidence 99988877 566666654
No 200
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=22.60 E-value=99 Score=27.40 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=27.2
Q ss_pred CcccCCCCcchHHHHHHHHHh----hc--CCCHHHHHHHHhH
Q 020625 268 DKLVDTNGAGDAFVGGFLSQL----VQ--EKPIEECVRAGCY 303 (323)
Q Consensus 268 ~~~~d~tGAGDaf~ag~~~~l----~~--g~~~~~a~~~A~~ 303 (323)
.-.+.+||.||.|+=..++.. ++ |+++++|++.+..
T Consensus 232 ~~Avs~TG~GE~iir~~~A~~v~~~m~~~g~s~~~A~~~~i~ 273 (318)
T PLN02689 232 LCAVSATGKGEAIIRGTVARDVAAVMEYKGLPLQEAVDYVIK 273 (318)
T ss_pred CcEEeeecchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 346889999999975554443 44 8899999998874
No 201
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=22.52 E-value=2.3e+02 Score=25.13 Aligned_cols=67 Identities=10% Similarity=-0.033 Sum_probs=35.1
Q ss_pred cccEEEEeccccccCHHHHHHHHH--HHHh----CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHH
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAE--HAAA----NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEA 205 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~ 205 (323)
..|+++|......-+...+..+.. ...+ .++..++|................-+..+|++++|+-+.
T Consensus 90 ~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl 162 (318)
T PRK11537 90 QFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_pred CCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEecccc
Confidence 489999986543222233333321 1111 334566777532111111223445678999999998763
No 202
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.47 E-value=2.4e+02 Score=23.38 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=31.3
Q ss_pred ccCHHHHHHHHHHHHhCC--CeEEEeCCchhHHHHHHHHHHhhcCCCcEEEe
Q 020625 151 TVSPDSIQLVAEHAAANN--KVFMMNLSAPFICEFFKDALEKVLPYMDYIFG 200 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 200 (323)
+.+++...+++..|+++. .|+.-|.+.|. ....+.+.+|+++.
T Consensus 107 Efs~R~~reLl~~a~~R~Ni~PIL~DA~~P~-------~Y~~~Ve~VDviy~ 151 (231)
T COG1889 107 EFSPRPMRELLDVAEKRPNIIPILEDARKPE-------KYRHLVEKVDVIYQ 151 (231)
T ss_pred EecchhHHHHHHHHHhCCCceeeecccCCcH-------HhhhhcccccEEEE
Confidence 456778888888887654 56888887554 36677888888883
No 203
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=22.35 E-value=6.1e+02 Score=23.24 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=22.1
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 176 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~ 176 (323)
+.++|+++.-. +....-.+.++.+.++++++.+++|-.
T Consensus 155 ~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 155 PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45677765322 111112366777777888888777753
No 204
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=22.27 E-value=1.2e+02 Score=27.11 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=42.5
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHHHHHHHHhhcC
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQG 213 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~e~~~l~~~~~ 213 (323)
..+.++|++++=|..+..........+..+++.|.+ +.+|++...... ..+..-.+.+..|..++..+.+..+++
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~-~ad~~i~i~pgtd~al~~a~~~~~i~g--- 227 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAA-KADEWLPIRPGTDAALALAEWAAEITG--- 227 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchH-hhCEeeCCCCCcHHHHHhHHHHHHHHC---
Confidence 446789998887755422211233344555556654 788987643210 000011122333333333344444443
Q ss_pred CCCCCHHHHHHHH
Q 020625 214 WETDDVEEIALKL 226 (323)
Q Consensus 214 ~~~~~~~~~~~~l 226 (323)
...+.++++++.+
T Consensus 228 ~~~~~i~~la~~~ 240 (374)
T cd00368 228 VPAETIRALAREF 240 (374)
T ss_pred CCHHHHHHHHHHH
Confidence 3334566777766
No 205
>PRK06234 methionine gamma-lyase; Provisional
Probab=22.24 E-value=6.1e+02 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=18.7
Q ss_pred cccEEEEeccc-cccCHHHHHHHHHHHHhC--CCeEEEeC
Q 020625 139 KAKYFYIAGFF-LTVSPDSIQLVAEHAAAN--NKVFMMNL 175 (323)
Q Consensus 139 ~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~d~ 175 (323)
+.++++++.-. +......+.++.+.++++ ++.+++|-
T Consensus 149 ~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDe 188 (400)
T PRK06234 149 NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDN 188 (400)
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEEC
Confidence 45666665322 111112355666666664 66666664
No 206
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.89 E-value=3.5e+02 Score=23.33 Aligned_cols=99 Identities=19% Similarity=0.093 Sum_probs=60.2
Q ss_pred cCCcccCCCcchhhhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE-e
Q 020625 122 CYKSEHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF-G 200 (323)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~-~ 200 (323)
.++++.++. ..+.+.+++-+++-| ...+.-+..++..+..+.|.++..-...... . .....+..-|+++ +
T Consensus 114 ~l~~~~l~~--av~~L~~A~rI~~~G--~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~----~-~~~~~~~~~Dv~i~i 184 (281)
T COG1737 114 LLDEEALER--AVELLAKARRIYFFG--LGSSGLVASDLAYKLMRIGLNVVALSDTHGQ----L-MQLALLTPGDVVIAI 184 (281)
T ss_pred hcCHHHHHH--HHHHHHcCCeEEEEE--echhHHHHHHHHHHHHHcCCceeEecchHHH----H-HHHHhCCCCCEEEEE
Confidence 344444443 556788888666655 3456667778888888888775443332221 1 1334567777877 3
Q ss_pred CHHHHHHHHhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEeeC
Q 020625 201 NETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQG 245 (323)
Q Consensus 201 n~~e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvit~G 245 (323)
+.. |. ..++.++++.. ...|.+.+.+|.-
T Consensus 185 S~s---------G~-t~e~i~~a~~a------k~~ga~vIaiT~~ 213 (281)
T COG1737 185 SFS---------GY-TREIVEAAELA------KERGAKVIAITDS 213 (281)
T ss_pred eCC---------CC-cHHHHHHHHHH------HHCCCcEEEEcCC
Confidence 221 11 23456677777 6678999999964
No 207
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.88 E-value=2.9e+02 Score=19.36 Aligned_cols=56 Identities=9% Similarity=-0.025 Sum_probs=37.1
Q ss_pred cccEEEEeccccccCH-HHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEEeCHH
Q 020625 139 KAKYFYIAGFFLTVSP-DSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNET 203 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~ 203 (323)
.-+++++|+.. ++. -.+.++-+.++++|+.+.++..+.. .+.......|++++.-+
T Consensus 3 ~~~ILl~C~~G--~sSS~l~~k~~~~~~~~gi~~~v~a~~~~-------~~~~~~~~~Dvill~pq 59 (95)
T TIGR00853 3 ETNILLLCAAG--MSTSLLVNKMNKAAEEYGVPVKIAAGSYG-------AAGEKLDDADVVLLAPQ 59 (95)
T ss_pred ccEEEEECCCc--hhHHHHHHHHHHHHHHCCCcEEEEEecHH-------HHHhhcCCCCEEEECch
Confidence 34677777754 333 3556777788899998877775432 24456678899997544
No 208
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=21.61 E-value=6.5e+02 Score=23.27 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=28.5
Q ss_pred hhccccEEEEeccccc----cCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 136 LVEKAKYFYIAGFFLT----VSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 136 ~~~~~~~v~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
.-++.+.++++.=+.. .+.+.+..+.+.|+++++.++.|=
T Consensus 169 ~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 169 ITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred ccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 3467899988753211 245889999999999997766553
No 209
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.37 E-value=73 Score=30.69 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=21.1
Q ss_pred CCcEEEEeeeecCchhHHHHHHHHHcCce
Q 020625 60 PGATSYIGCIGKDKFGEEMKKNSKLAGVN 88 (323)
Q Consensus 60 g~~v~~~~~vG~D~~g~~i~~~l~~~gi~ 88 (323)
|.+|.++ .|+|.+|.-|....+++|++
T Consensus 42 G~~v~fv--tGtDeHGt~I~~~A~~~g~t 68 (558)
T COG0143 42 GYEVFFL--TGTDEHGTKIELKAEKEGIT 68 (558)
T ss_pred CCeEEEE--eccCCCCCHHHHHHHHcCCC
Confidence 5999998 68999998877766666554
No 210
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=21.28 E-value=4.8e+02 Score=21.68 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=31.1
Q ss_pred ccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch
Q 020625 138 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP 178 (323)
Q Consensus 138 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 178 (323)
.++||+.+.|.. +.+++...++.++++|..+.+|.-+.
T Consensus 79 aGAd~~tV~g~A---~~~TI~~~i~~A~~~~~~v~iDl~~~ 116 (217)
T COG0269 79 AGADWVTVLGAA---DDATIKKAIKVAKEYGKEVQIDLIGV 116 (217)
T ss_pred cCCCEEEEEecC---CHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 578999998743 67889999999999999888887443
No 211
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.14 E-value=4.6e+02 Score=23.46 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=47.0
Q ss_pred EEEeccccccCHHHHHHHHHHHHhCC-C-eEEEeCCchhHHHHHHHHHHhh-cCCCcEEE--eCHHHHHHHHhhcCCCCC
Q 020625 143 FYIAGFFLTVSPDSIQLVAEHAAANN-K-VFMMNLSAPFICEFFKDALEKV-LPYMDYIF--GNETEARTFSKVQGWETD 217 (323)
Q Consensus 143 v~i~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~d~~~~~~~~~~~~~~~~~-l~~~dvl~--~n~~e~~~l~~~~~~~~~ 217 (323)
.|++|-.-...-..+..+++.+++.. + .+++........+...+.+++. +....+-+ +...-++.|.|....+-+
T Consensus 163 aHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~ 242 (414)
T COG2100 163 AHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVK 242 (414)
T ss_pred EEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHH
Confidence 56776431111245667777777654 2 3666665555544445555554 55555444 556667777776555544
Q ss_pred CHHHHHHHH
Q 020625 218 DVEEIALKL 226 (323)
Q Consensus 218 ~~~~~~~~l 226 (323)
...+.++.+
T Consensus 243 kvle~aE~i 251 (414)
T COG2100 243 KVLEVAEYI 251 (414)
T ss_pred HHHHHHHHH
Confidence 455666665
No 212
>PLN00175 aminotransferase family protein; Provisional
Probab=21.03 E-value=6.5e+02 Score=23.04 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=24.1
Q ss_pred cccEEEEeccc-c---ccCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 139 KAKYFYIAGFF-L---TVSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 139 ~~~~v~i~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
+.++++++... + ..+.+.+.++++.|+++++.++.|-
T Consensus 187 ~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De 227 (413)
T PLN00175 187 KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDE 227 (413)
T ss_pred CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEec
Confidence 46777775322 1 2345678888888888887766554
No 213
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=21.00 E-value=1.8e+02 Score=27.63 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=28.3
Q ss_pred hhhccccEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCchh
Q 020625 135 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAPF 179 (323)
Q Consensus 135 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 179 (323)
..+.++|++++=|.++..+.......+..++++|.+ +++|++...
T Consensus 153 ~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ 198 (501)
T cd02766 153 EDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTA 198 (501)
T ss_pred HHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCc
Confidence 457889999988766432211233344557778855 788986543
No 214
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=20.78 E-value=3.7e+02 Score=20.12 Aligned_cols=90 Identities=26% Similarity=0.310 Sum_probs=44.9
Q ss_pred EeeeecCchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEEEE
Q 020625 66 IGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYI 145 (323)
Q Consensus 66 ~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 145 (323)
++.+|....|..+-..|.+.|..+..+... +.. .-++.. ...+.....+ ..+.++.+|+++|
T Consensus 13 I~iIGaGrVG~~La~aL~~ag~~v~~v~sr---s~~------sa~~a~-~~~~~~~~~~--------~~~~~~~aDlv~i 74 (127)
T PF10727_consen 13 IGIIGAGRVGTALARALARAGHEVVGVYSR---SPA------SAERAA-AFIGAGAILD--------LEEILRDADLVFI 74 (127)
T ss_dssp EEEECTSCCCCHHHHHHHHTTSEEEEESSC---HH-------HHHHHH-C--TT-------------TTGGGCC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEEeC---Ccc------cccccc-cccccccccc--------cccccccCCEEEE
Confidence 344555667888899999988776655321 110 001100 0001001111 1245678999998
Q ss_pred eccccccCHHHHHHHHHHHHhCC----CeEEEeCCch
Q 020625 146 AGFFLTVSPDSIQLVAEHAAANN----KVFMMNLSAP 178 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~ 178 (323)
+ ++.+.+..+++...+.+ -++++-.+..
T Consensus 75 a-----vpDdaI~~va~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 75 A-----VPDDAIAEVAEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp ------S-CCHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred E-----echHHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence 6 46677888888777652 2355555543
No 215
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=20.57 E-value=6.2e+02 Score=22.62 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=36.2
Q ss_pred hhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEE
Q 020625 136 LVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 199 (323)
Q Consensus 136 ~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 199 (323)
.+.-+|..+..+. -..+.+..+++.|+++++.+.+--....+...+++.++. ..+.++.
T Consensus 37 ~~~~aD~~~~eP~---~~~~yv~~~l~~C~~~~Idv~~P~~~~~~l~~~r~~F~a--~Gv~l~~ 95 (329)
T PF15632_consen 37 ILYAADEAYLEPA---DGEEYVDWCLDFCKEHGIDVFVPGRNRELLAAHRDEFEA--LGVKLLT 95 (329)
T ss_pred HHhcCceeeecCC---CHHHHHHHHHHHHHHhCCeEEEcCccHHHHHHHHHHHHH--hCCEEEe
Confidence 3556666666542 235677888888888888887777666654334443332 2455555
No 216
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=20.46 E-value=2.2e+02 Score=22.15 Aligned_cols=84 Identities=13% Similarity=-0.013 Sum_probs=46.7
Q ss_pred CchhHHHHHHHHHcCceeEEeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccccEEEEeccccc
Q 020625 72 DKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLT 151 (323)
Q Consensus 72 D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 151 (323)
...|+.+.+.|.+.|.+...+.....+... ..+- .++. .+..+. ......++++|.++...-...
T Consensus 8 G~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~-~~~~-------~d~~d~--~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 8 GFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGV-EIIQ-------GDLFDP--DSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTE-EEEE-------SCTTCH--HHHHHHHTTSSEEEECCHSTT
T ss_pred ChHHHHHHHHHHHCCCEEEEEecCchhccc-----cccc-ccce-------eeehhh--hhhhhhhhhcchhhhhhhhhc
Confidence 467899999999998776665322211111 0000 1110 111111 224467889999887642111
Q ss_pred cCHHHHHHHHHHHHhCCCe
Q 020625 152 VSPDSIQLVAEHAAANNKV 170 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~ 170 (323)
-..+....+++.+++.+++
T Consensus 73 ~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 73 KDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp THHHHHHHHHHHHHHTTSS
T ss_pred ccccccccccccccccccc
Confidence 1245678888888888875
No 217
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.19 E-value=3e+02 Score=18.83 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=22.9
Q ss_pred cccEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeC
Q 020625 139 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNL 175 (323)
Q Consensus 139 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 175 (323)
++.+|++.. +.++++...+...|+.+++++.+..
T Consensus 24 kakLViiA~---Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 24 NVLQVYIAK---DAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred CeeEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 466777654 4566777777777777777775444
No 218
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.15 E-value=4.8e+02 Score=24.45 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=26.0
Q ss_pred cCchHHHHHHHHHHhcCCCCcEEEEeeeecCchhHHHHHHHHHcCceeEE
Q 020625 42 AGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHY 91 (323)
Q Consensus 42 ~GG~~~n~a~~l~~l~g~g~~v~~~~~vG~D~~g~~i~~~l~~~gi~~~~ 91 (323)
.|+.|.-+|..|++ .|.+|.++-.-. ......+.+.|++.||....
T Consensus 24 ~G~~G~~~A~~L~~---~G~~V~~~d~~~-~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 24 LGVSGFAAADALLE---LGARVTVVDDGD-DERHRALAAILEALGATVRL 69 (480)
T ss_pred CCHHHHHHHHHHHH---CCCEEEEEeCCc-hhhhHHHHHHHHHcCCEEEE
Confidence 45555555555554 458876653221 12334556778888987643
No 219
>PRK08223 hypothetical protein; Validated
Probab=20.13 E-value=2.6e+02 Score=24.39 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=24.6
Q ss_pred hhhhhccccEEEEeccccccCHHHHHHHHHHHHhCCCeEEE
Q 020625 133 NWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMM 173 (323)
Q Consensus 133 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
..+.++++|+|+ ++.. +...+....+-+.|++++++++.
T Consensus 111 ~~~ll~~~DlVv-D~~D-~~~~~~r~~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 111 ADAFLDGVDVYV-DGLD-FFEFDARRLVFAACQQRGIPALT 149 (287)
T ss_pred HHHHHhCCCEEE-ECCC-CCcHHHHHHHHHHHHHcCCCEEE
Confidence 446678999885 5532 11125556677788888887544
No 220
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=20.00 E-value=1.3e+02 Score=25.78 Aligned_cols=29 Identities=14% Similarity=-0.058 Sum_probs=26.1
Q ss_pred CcchHHHHHHHHHhhcCCCHHHHHHHHhH
Q 020625 275 GAGDAFVGGFLSQLVQEKPIEECVRAGCY 303 (323)
Q Consensus 275 GAGDaf~ag~~~~l~~g~~~~~a~~~A~~ 303 (323)
-.||.+.+-+.++...|.++++|++.++.
T Consensus 193 ElGDlLf~lv~lAr~~~id~E~aL~~a~~ 221 (262)
T PRK09562 193 EFGDLLFALVNLARHLGIDPEAALRKANA 221 (262)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46999999999999999999999998764
Done!