BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020626
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g21360
pdb|1Y0Z|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g21360
pdb|2Q4A|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g21360
pdb|2Q4A|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g21360
Length = 330
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 209/325 (64%), Positives = 260/325 (80%), Gaps = 6/325 (1%)
Query: 5 FAEIKLAEQKSYNSIPFPWVLTPNSTT------NLSFLTETIRTQKPFLESLLLKAGAVL 58
E + +QK Y S PFP V++P S + +L T+TI+TQK +L+SLL ++GAVL
Sbjct: 6 LVETPIPQQKHYESKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHESGAVL 65
Query: 59 LRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDRNIPFHQEMAL 118
RGF V +A+DFNDVVEAFG++ELPYVGGAAPR+ VVGRVFTANES D+ IPFH EMA
Sbjct: 66 FRGFPVNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQ 125
Query: 119 LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 178
+ +FPSKLFF+CE+EP GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+ E D
Sbjct: 126 VREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDD 185
Query: 179 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 238
D +SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK
Sbjct: 186 DPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRK 245
Query: 239 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 298
+WFNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLL
Sbjct: 246 VWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLL 305
Query: 299 IDNLAVLHARRSSSRPRHILASLCK 323
IDN AVLH+RR PR +LASLCK
Sbjct: 306 IDNWAVLHSRRPFDPPRRVLASLCK 330
>pdb|3N6W|A Chain A, Crystal Structure Of Human Gamma-Butyrobetaine Hydroxylase
Length = 403
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 49 SLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDR 108
S L K G V L G K + + + + G+ L + G V ++ N +
Sbjct: 158 STLKKVGIVRLTGASDKPG-EVSKLGKRMGFLYLTFYGHTW---QVQDKIDANNVAYTTG 213
Query: 109 NIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGL 168
+ FH + L P C + V+GGD+ +V V +++K++ P+ Q L +
Sbjct: 214 KLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFV 273
Query: 169 IYTRI 173
+T I
Sbjct: 274 DFTDI 278
>pdb|3MS5|A Chain A, Crystal Structure Of Human
Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (Bbox1)
pdb|3O2G|A Chain A, Crystal Structure Of Human
Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (Bbox1)
Length = 388
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 49 SLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDR 108
S L K G V L G K + + + + G+ L + G V ++ N +
Sbjct: 143 STLKKVGIVRLTGASDKPG-EVSKLGKRMGFLYLTFYGHTW---QVQDKIDANNVAYTTG 198
Query: 109 NIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGL 168
+ FH + L P C + V+GGD+ +V V +++K++ P+ Q L +
Sbjct: 199 KLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFV 258
Query: 169 IYTRI 173
+T I
Sbjct: 259 DFTDI 263
>pdb|1H6W|A Chain A, Crystal Structure Of A Heat- And Protease-Stable Fragment
Of The Bacteriophage T4 Short Fibre
Length = 312
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 97 RVFTANESSLDRNIPFHQEMA-LLPQFPSKLFFFCEVEPVSGGDTPLVLSHI 147
RV T NE +DR IP M PS + FC VS D PL S I
Sbjct: 246 RVVTQNE--IDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRI 295
>pdb|1PDI|A Chain A, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|B Chain B, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|C Chain C, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|D Chain D, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|E Chain E, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|F Chain F, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|G Chain G, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|H Chain H, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|I Chain I, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|J Chain J, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|K Chain K, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|L Chain L, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|M Chain M, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|N Chain N, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|O Chain O, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|P Chain P, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|Q Chain Q, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
pdb|1PDI|R Chain R, Fitting Of The C-terminal Part Of The Short Tail Fibers
Into The Cryo-em Reconstruction Of T4 Baseplate
Length = 278
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 97 RVFTANESSLDRNIPFHQEMA-LLPQFPSKLFFFCEVEPVSGGDTPLVLSHI 147
RV T NE +DR IP M PS + FC VS D PL S I
Sbjct: 81 RVVTQNE--IDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRI 130
>pdb|1OCY|A Chain A, Structure Of The Receptor-Binding Domain Of The
Bacteriophage T4 Short Tail Fibre
Length = 198
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 97 RVFTANESSLDRNIPFHQEMALLP-QFPSKLFFFCEVEPVSGGDTPLVLSHI 147
RV T NE +DR IP M PS + FC VS D PL S I
Sbjct: 1 RVVTQNE--IDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRI 50
>pdb|1DRT|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii), 2- Oxoglutarate And Proclavaminic Acid
pdb|1DRY|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii), 2- Oxoglutarate And N-Alpha-L-Acetyl Arginine
pdb|1DS0|A Chain A, Crystal Structure Of Clavaminate Synthase
pdb|1DS1|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii) And 2-Oxoglutarate
pdb|1GVG|A Chain A, Crystal Structure Of Clavaminate Synthase With Nitric
Oxide
Length = 324
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 269 PYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHAR 308
P ++ V L K L+E A+ + GD+L++DN HAR
Sbjct: 242 PADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHAR 281
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 60 RGFDVKTANDFNDVVEAFGYEELPY 84
RG ++ A DFN +V A GY+E Y
Sbjct: 58 RGITLRRAEDFNKIVMASGYDERAY 82
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 181 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKI 234
T+P G G +++ + L E A+ L + M ++ VL P PA+TY I
Sbjct: 204 TTPNGNG-TNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPAITYRTI 256
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 181 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKI 234
T+P G G +++ + L E A+ L + M ++ VL P PA+TY I
Sbjct: 204 TTPNGNG-TNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPAITYRTI 256
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 60 RGFDVKTANDFNDVVEAFGYEELPY 84
RG ++ A DFN +V A GY+E Y
Sbjct: 293 RGITLRRAEDFNKIVMASGYDERAY 317
>pdb|1OIJ|A Chain A, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe (Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Alphaketoglutarate
pdb|1OIK|A Chain A, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe(Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Fe, Alphaketoglutarate And
2-Ethyl-1-Hexanesulfuric Acid
pdb|1OIK|D Chain D, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe(Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Fe, Alphaketoglutarate And
2-Ethyl-1-Hexanesulfuric Acid
Length = 301
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 108 RNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQL 163
R +H ++ + +P V P SGGDT + Y+ + E E +L
Sbjct: 103 RANSWHTDVTFVEAYPKASILRSVVAPASGGDTVWANTAAAYQELPEPLRELADKL 158
>pdb|1OIJ|C Chain C, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe (Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Alphaketoglutarate
Length = 301
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 108 RNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQL 163
R +H ++ + +P V P SGGDT + Y+ + E E +L
Sbjct: 103 RANSWHTDVTFVEAYPKASILRSVVAPASGGDTVWANTAAAYQELPEPLRELADKL 158
>pdb|1OIH|A Chain A, Crystal Structure Of The Alkylsulfatase Atsk, A Non-heme
Fe(ii) Alphaketoglutarate Dependent Dioxygenase
pdb|1OIH|B Chain B, Crystal Structure Of The Alkylsulfatase Atsk, A Non-heme
Fe(ii) Alphaketoglutarate Dependent Dioxygenase
pdb|1OIH|C Chain C, Crystal Structure Of The Alkylsulfatase Atsk, A Non-heme
Fe(ii) Alphaketoglutarate Dependent Dioxygenase
pdb|1OIH|D Chain D, Crystal Structure Of The Alkylsulfatase Atsk, A Non-heme
Fe(ii) Alphaketoglutarate Dependent Dioxygenase
pdb|1OII|A Chain A, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe(Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Iron And Alphaketoglutarate
pdb|1OII|B Chain B, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe(Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Iron And Alphaketoglutarate
pdb|1OII|C Chain C, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe(Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Iron And Alphaketoglutarate
pdb|1OII|D Chain D, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe(Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Iron And Alphaketoglutarate
pdb|1OIJ|B Chain B, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe (Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Alphaketoglutarate
pdb|1OIJ|D Chain D, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme
Fe (Ii) Alphaketoglutarate Dependent Dioxygenase In
Complex With Alphaketoglutarate
pdb|1VZ4|A Chain A, Fe-succinate Complex Of Atsk
pdb|1VZ4|D Chain D, Fe-succinate Complex Of Atsk
pdb|1VZ5|A Chain A, Succinate Complex Of Atsk
pdb|1VZ5|B Chain B, Succinate Complex Of Atsk
pdb|1VZ5|C Chain C, Succinate Complex Of Atsk
pdb|1VZ5|D Chain D, Succinate Complex Of Atsk
Length = 301
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 108 RNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQL 163
R +H ++ + +P V P SGGDT + Y+ + E E +L
Sbjct: 103 RANSWHTDVTFVEAYPKASILRSVVAPASGGDTVWANTAAAYQELPEPLRELADKL 158
>pdb|1NX8|A Chain A, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
pdb|1NX8|B Chain B, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
pdb|1NX8|C Chain C, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
Length = 273
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 291 WQNGDVLLIDNLAVLHAR 308
W++GD+L++DN V+H R
Sbjct: 236 WEDGDLLIMDNRRVIHER 253
>pdb|3EAT|X Chain X, Crystal Structure Of The Pvcb (Pa2255) Protein From
Pseudomonas Aeruginosa
Length = 293
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 291 WQNGDVLLIDNLAVLHARRSSSR--PRHI 317
W++ D+++ DNL +LH R + + PRH+
Sbjct: 246 WRSDDLVIADNLTLLHGREAFAHRAPRHL 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,937,779
Number of Sequences: 62578
Number of extensions: 424323
Number of successful extensions: 924
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 24
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)