BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020626
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIG0|Y3136_ARATH Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana
GN=At3g21360 PE=1 SV=1
Length = 330
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 209/325 (64%), Positives = 260/325 (80%), Gaps = 6/325 (1%)
Query: 5 FAEIKLAEQKSYNSIPFPWVLTPNSTT------NLSFLTETIRTQKPFLESLLLKAGAVL 58
E + +QK Y S PFP V++P S + +L T+TI+TQK +L+SLL ++GAVL
Sbjct: 6 LVETPIPQQKHYESKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHESGAVL 65
Query: 59 LRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDRNIPFHQEMAL 118
RGF V +A+DFNDVVEAFG++ELPYVGGAAPR+ VVGRVFTANES D+ IPFH EMA
Sbjct: 66 FRGFPVNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQ 125
Query: 119 LPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKD 178
+ +FPSKLFF+CE+EP GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+ E D
Sbjct: 126 VREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDD 185
Query: 179 DLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRK 238
D +SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK
Sbjct: 186 DPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRK 245
Query: 239 IWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLL 298
+WFNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLL
Sbjct: 246 VWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLL 305
Query: 299 IDNLAVLHARRSSSRPRHILASLCK 323
IDN AVLH+RR PR +LASLCK
Sbjct: 306 IDNWAVLHSRRPFDPPRRVLASLCK 330
>sp|Q57611|Y147_METJA Uncharacterized ATP-binding protein MJ0147 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0147 PE=3 SV=1
Length = 371
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 106 LDRNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQ 165
+R H+ +++L P+ ++F P++ G T L+ HI+ ++ + Y F
Sbjct: 8 FNREKEIHEILSILEGEPNIIYFIYG--PLNSGKTALI-KHIIENKLSDDYKVFYINFR- 63
Query: 166 DGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLG- 224
T + EK + K F + K +E NL K G K + G
Sbjct: 64 -----TYLISEKREFIEAIFTTKKDDFFEKIKDKSE--VLNLITK-------GAKILTGI 109
Query: 225 PIPAVTYDKIRQRKI-----WFNSIVM 246
PIP V +DK+ + KI + NSI++
Sbjct: 110 PIPEVEFDKLFEEKINDAFQYLNSILL 136
>sp|Q3AFE0|Y272_CARHZ UPF0042 nucleotide-binding protein CHY_0272 OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=CHY_0272
PE=3 SV=1
Length = 289
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 34 SFLTETIRTQKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSH 93
S + + I+ ++ FLE+L +A V+ D++ A+ N+++ +G E+ RS
Sbjct: 113 SQILDNIKKERKFLENLRARADKVIDTS-DLQPADLRNEILNYYGEEQ--------KRSK 163
Query: 94 VVGRVFTANESSLDRNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMK 153
+ + T +P ++ + +F F+ E+ P+SG D P+ YE K
Sbjct: 164 ISINIVTFGYKY---GLPLDADLIMDVRFLPNPFYVKELRPLSGSDKPVYDYVFNYEVTK 220
Query: 154 ESYPEFVQQLE 164
+ +F+ +E
Sbjct: 221 KFTEKFLDLIE 231
>sp|P0A3T2|BCSP_BRUME 31 kDa immunogenic protein OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=bcsP31 PE=4 SV=1
Length = 329
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 225 PIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVT--FGNGSPYPEDIVYNLMKIL 282
PI DKI ++ +F+ V+ +KD P AV + + P+D++YN+ K+L
Sbjct: 223 PISGPEADKILEKYSFFSKDVVPAGAYKDVAETPTLAVAAQWVTSAKQPDDLIYNITKVL 282
Query: 283 EEE 285
E
Sbjct: 283 WNE 285
>sp|P0A3T3|BCSP_BRUAB 31 kDa immunogenic protein OS=Brucella abortus biovar 1 (strain
9-941) GN=bcsP31 PE=4 SV=1
Length = 329
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 225 PIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVT--FGNGSPYPEDIVYNLMKIL 282
PI DKI ++ +F+ V+ +KD P AV + + P+D++YN+ K+L
Sbjct: 223 PISGPEADKILEKYSFFSKDVVPAGAYKDVAETPTLAVAAQWVTSAKQPDDLIYNITKVL 282
Query: 283 EEE 285
E
Sbjct: 283 WNE 285
>sp|Q5R5D8|BODG_PONAB Gamma-butyrobetaine dioxygenase OS=Pongo abelii GN=BBOX1 PE=2 SV=1
Length = 387
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 49 SLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDR 108
S L K G V L G K + + + + G+ L + G V ++ N +
Sbjct: 142 STLKKVGIVRLTGASDKPG-EVSKLGKRMGFLYLTFYGHTW---QVQDKIDANNVAYTTG 197
Query: 109 NIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGL 168
+ FH + L P C + V+GGD+ +V V +++K++ P+ Q L +
Sbjct: 198 KLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFV 257
Query: 169 IYTRI 173
+T I
Sbjct: 258 DFTDI 262
>sp|O75936|BODG_HUMAN Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN=BBOX1 PE=1 SV=1
Length = 387
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 49 SLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDR 108
S L K G V L G K + + + + G+ L + G V ++ N +
Sbjct: 142 STLKKVGIVRLTGASDKPG-EVSKLGKRMGFLYLTFYGHTW---QVQDKIDANNVAYTTG 197
Query: 109 NIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGL 168
+ FH + L P C + V+GGD+ +V V +++K++ P+ Q L +
Sbjct: 198 KLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFV 257
Query: 169 IYTRI 173
+T I
Sbjct: 258 DFTDI 262
>sp|Q58211|Y801_METJA Uncharacterized ATP-binding protein MJ0801 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0801 PE=3 SV=1
Length = 379
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 45/192 (23%)
Query: 106 LDRNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQ 165
DR ++ + +L + P ++F P++ G T L+ HI+ ++ + Y F
Sbjct: 4 FDREREINEILHILNREPDDIYFIYG--PLNSGKTALI-KHIIENKLSDDYKVFYINFR- 59
Query: 166 DGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLG- 224
T + EK + K F + K ++ NL K GV+ + G
Sbjct: 60 -----TYLISEKREFIEAIFTTKKDDFFEKIKD--KDEVLNLITK-------GVRILTGI 105
Query: 225 PIPAVTYDKIRQRKI-----WFNSIV------------------MAYTCWKDTQNDPVKA 261
PIP V +DK+ + KI + NS++ M +T+N A
Sbjct: 106 PIPEVEFDKLFEEKINDAFQYLNSLLLEVKKSGKKPILIFDELQMIKDVVLNTENQRFSA 165
Query: 262 ---VTFGNGSPY 270
+ FGNG Y
Sbjct: 166 FPSLRFGNGQKY 177
>sp|Q05582|CAS2_STRC2 Clavaminate synthase 2 OS=Streptomyces clavuligerus (strain ATCC
27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 /
NRRL 3585 / VKM Ac-602) GN=cs2 PE=1 SV=3
Length = 325
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 269 PYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHAR 308
P ++ V +L + L++ V + GDVL+IDN HAR
Sbjct: 243 PADKEAVAHLSQALDDVTVGVKLVPGDVLIIDNFRTTHAR 282
>sp|P53303|ZPR1_YEAST Zinc finger protein ZPR1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ZPR1 PE=1 SV=1
Length = 486
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 173 IYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDG 217
+ ++K+DL P G + ED+S+AE+ AN G+KL +D
Sbjct: 1 MSEQKEDLFKPVGEAAAEV---EDESIAEQNKANDGVKLTGAQDA 42
>sp|Q05581|CAS1_STRC2 Clavaminate synthase 1 OS=Streptomyces clavuligerus (strain ATCC
27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 /
NRRL 3585 / VKM Ac-602) GN=cs1 PE=1 SV=3
Length = 324
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 269 PYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHAR 308
P ++ V L K L+E A+ + GD+L++DN HAR
Sbjct: 242 PADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHAR 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,807,181
Number of Sequences: 539616
Number of extensions: 5377141
Number of successful extensions: 11363
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11353
Number of HSP's gapped (non-prelim): 16
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)