Query 020626
Match_columns 323
No_of_seqs 200 out of 1181
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00139 hypothetical protein; 100.0 9.4E-66 2E-70 469.1 32.2 313 3-323 5-320 (320)
2 PRK09553 tauD taurine dioxygen 100.0 6.6E-42 1.4E-46 309.0 16.2 242 34-321 19-269 (277)
3 TIGR02409 carnitine_bodg gamma 100.0 4.9E-35 1.1E-39 274.3 21.6 225 35-321 114-351 (366)
4 TIGR02410 carnitine_TMLD trime 100.0 7.4E-35 1.6E-39 272.2 20.8 228 42-321 115-347 (362)
5 PF02668 TauD: Taurine catabol 100.0 9.5E-35 2E-39 259.9 13.4 225 41-322 23-258 (258)
6 COG2175 TauD Probable taurine 100.0 8.5E-34 1.8E-38 252.7 18.8 252 19-321 12-274 (286)
7 cd00250 CAS_like Clavaminic ac 100.0 2.8E-32 6.1E-37 244.9 21.0 220 43-322 33-258 (262)
8 KOG3888 Gamma-butyrobetaine,2- 99.9 5.5E-25 1.2E-29 195.2 16.7 224 43-322 153-387 (407)
9 KOG3889 Predicted gamma-butyro 99.9 3.3E-24 7.1E-29 183.9 13.5 217 44-321 127-354 (371)
10 PRK02963 carbon starvation ind 99.9 1.9E-21 4.2E-26 173.7 14.4 195 53-318 85-301 (316)
11 PF08943 CsiD: CsiD; InterPro 98.3 2.4E-06 5.1E-11 74.0 7.9 195 53-313 72-281 (297)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 73.5 1.2 2.7E-05 33.1 0.3 32 291-322 66-98 (100)
13 COG4340 Uncharacterized protei 57.3 6.8 0.00015 32.9 1.7 26 287-312 175-200 (226)
14 PRK05467 Fe(II)-dependent oxyg 56.9 11 0.00025 32.9 3.1 40 106-145 89-137 (226)
15 PF06940 DUF1287: Domain of un 56.0 6.9 0.00015 32.1 1.5 12 289-300 105-116 (164)
16 smart00702 P4Hc Prolyl 4-hydro 54.3 14 0.0003 30.6 3.2 39 107-145 93-133 (178)
17 smart00702 P4Hc Prolyl 4-hydro 54.1 12 0.00026 31.0 2.8 36 286-321 138-176 (178)
18 PF12851 Tet_JBP: Oxygenase do 51.6 13 0.00029 30.9 2.6 29 285-313 126-154 (171)
19 TIGR00113 queA S-adenosylmethi 51.4 8.7 0.00019 35.7 1.6 20 291-310 49-68 (344)
20 PRK00147 queA S-adenosylmethio 46.8 12 0.00026 34.8 1.7 20 291-310 50-69 (342)
21 PRK01424 S-adenosylmethionine: 45.8 12 0.00026 34.8 1.6 20 291-310 47-66 (366)
22 PF02547 Queuosine_synth: Queu 45.5 9.2 0.0002 35.6 0.8 22 290-311 48-69 (341)
23 COG0809 QueA S-adenosylmethion 45.0 13 0.00029 34.2 1.7 18 291-308 50-67 (348)
24 KOG0464 Elongation factor G [T 38.7 20 0.00044 34.2 1.9 40 121-163 452-491 (753)
25 COG5285 Protein involved in bi 37.6 25 0.00055 31.8 2.3 35 43-77 11-45 (299)
26 PF14226 DIOX_N: non-haem diox 35.7 1E+02 0.0022 23.1 5.3 36 41-77 14-52 (116)
27 PHA02813 hypothetical protein; 35.0 32 0.00069 32.0 2.5 40 106-145 103-144 (354)
28 PF00446 GnRH: Gonadotropin-re 32.0 24 0.00052 14.8 0.6 8 287-294 3-10 (10)
29 PF05118 Asp_Arg_Hydrox: Aspar 29.4 33 0.00072 28.2 1.6 32 287-319 124-156 (163)
30 TIGR02408 ectoine_ThpD ectoine 29.3 50 0.0011 29.7 2.8 32 287-319 211-244 (277)
31 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 28.4 29 0.00063 29.6 1.1 26 286-311 152-177 (195)
32 PF00877 NLPC_P60: NlpC/P60 fa 27.9 35 0.00076 25.4 1.4 14 288-301 49-62 (105)
33 PF13759 2OG-FeII_Oxy_5: Putat 24.7 49 0.0011 24.6 1.7 35 285-320 64-99 (101)
34 PRK10838 spr outer membrane li 24.3 47 0.001 28.2 1.6 12 290-301 128-139 (190)
35 TIGR02219 phage_NlpC_fam putat 23.7 56 0.0012 25.9 1.9 12 290-301 76-87 (134)
36 PF12990 DUF3874: Domain of un 23.7 24 0.00052 25.0 -0.2 33 126-158 9-41 (73)
37 PHA02869 C4L/C10L-like gene fa 23.7 74 0.0016 30.2 2.9 39 106-144 112-152 (418)
38 PLN03176 flavanone-3-hydroxyla 23.3 2.2E+02 0.0047 22.1 5.1 26 42-68 55-80 (120)
39 PF09673 TrbC_Ftype: Type-F co 21.2 2.6E+02 0.0057 21.4 5.1 33 45-77 15-47 (113)
40 PRK05467 Fe(II)-dependent oxyg 20.8 72 0.0016 27.9 2.1 33 287-320 141-174 (226)
41 PRK10664 transcriptional regul 20.5 1.9E+02 0.0042 21.1 4.1 33 32-64 17-49 (90)
No 1
>PLN00139 hypothetical protein; Provisional
Probab=100.00 E-value=9.4e-66 Score=469.12 Aligned_cols=313 Identities=43% Similarity=0.764 Sum_probs=278.7
Q ss_pred cccccccccccccCCCCCCceEEecCCC--CChhhHHHHHHhhHHHHHHHHhhccEEEEecCCCCChhHHHHHHHHhCCC
Q 020626 3 DHFAEIKLAEQKSYNSIPFPWVLTPNST--TNLSFLTETIRTQKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYE 80 (323)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~l~~~~~~~~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~G~~ 80 (323)
.+|+..++++++++++.++|++|+|..+ .+..+|.+|..+.+++|+++|.+||+|+||||++.+.++|.+|+++||..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~p~vi~~~~~~~~~~~~l~~~~~~~~~~l~~~L~~hGavlfRG~~i~~~~~f~~~a~~fg~~ 84 (320)
T PLN00139 5 KDFKVGKCEGQKVVDGETMPLVLQPPEPNKSDTESLVSALKQNKDWFEQMLIKNSAVLLRGFDVKNAEDFNDIIEAFGWD 84 (320)
T ss_pred cceeeccccCcccCCCCCCCeEEecCcccccchhhHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHhCcc
Confidence 3578889999999999999999999864 24446899999999999999999999999999997789999999999997
Q ss_pred CCCCccCCCCceeecCceeecCCCCCCCCccccCCCCCCCCCCcEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHH
Q 020626 81 ELPYVGGAAPRSHVVGRVFTANESSLDRNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFV 160 (323)
Q Consensus 81 ~~~~~g~~~~r~~~~~~v~~~~~~~~~~~~~~HtD~sy~~~pP~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~ 160 (323)
.++|.+ ..+|..+.+.|+++++.|....+.||+|++|.+.||.+++|||+++|+.||+|.|||+++||+.|++..|+++
T Consensus 85 ~~~y~~-~~~r~~v~~~v~t~te~P~~~~i~~H~E~sy~~~pP~~~~f~C~~~p~~GGeT~~aD~~~v~~~L~~~~p~~~ 163 (320)
T PLN00139 85 DIRYVG-PAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPEGGQTPFVPSFRVTERMLEEFPEAV 163 (320)
T ss_pred ccccCC-CCCcccccccEecCCCCCccccccccccccCccCCCceEEEEecccCCCCCCCeeecHHHHHHHhhhhCHHHH
Confidence 777877 4677777788999888888888999999999999999999999999999999999999999999998889999
Q ss_pred HHHHhCCeEEEEEecCCCCCCCCCCCCcccccccCChHHHHHHHHHcCCcEEEecCCceEEEEeeeCeeEec-CCCCcee
Q 020626 161 QQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYD-KIRQRKI 239 (323)
Q Consensus 161 ~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~h-P~TG~~~ 239 (323)
+.|+++|+.|.|+++...+..++.+.+|+.+|+|+|++++|++|+..|+.++|.+||.+.+.....|+++.| |.||+++
T Consensus 164 e~l~~~gv~y~r~~~~~~~~~~~~~~sWq~~F~t~d~~eve~~~~~~g~~~eW~~dg~l~~~~~~~~~~~~~~~~tg~~~ 243 (320)
T PLN00139 164 EEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKAEAERRAKALGMDMEWLPNGGVKTILGPRSLTKVFDGRKGRRM 243 (320)
T ss_pred HHHHhcCceEEEeccccccccccccchHHHHhCCCCHHHHHHHHHHcCCeEEEcCCCcEEEEEeeccceeccCCCCCCEE
Confidence 999999999999876543333456789999999999999999999999999999999733333556777775 5999999
Q ss_pred eeeccchhccccccCCCCCCcceecCCCCCCCHHHHHHHHHHHHHhcccccccCCCEEEEecccccccCCCCCCCceeee
Q 020626 240 WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILA 319 (323)
Q Consensus 240 lf~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~l~~l~~~~~~~~~~~~w~~GDlli~DN~~~lH~R~~f~g~Rr~l~ 319 (323)
|||+++.+|.. .+..++||||++|+++.+++|.+++++.++.+.||+|||+++||.+++|||.+|+|+||+++
T Consensus 244 wFN~~~~~h~~-------~~~~~~fGDGs~i~~~~l~~i~~~~~~~~~~~~Wq~GDvl~iDN~~~~HGR~pf~g~Rrvlv 316 (320)
T PLN00139 244 WFNTVVGMHGK-------ESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGDVLFLDNLALLHGRRPSLPPRKVLV 316 (320)
T ss_pred Eeechhhhhcc-------CCCCceecCCCcCCHHHHHHHHHHHHHhhccCCCCCCCEEEEeChhhhcCCCCCCCCceEEE
Confidence 99998877742 23457899999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 020626 320 SLCK 323 (323)
Q Consensus 320 ~~~~ 323 (323)
+|++
T Consensus 317 ~m~~ 320 (320)
T PLN00139 317 ATCK 320 (320)
T ss_pred EecC
Confidence 9985
No 2
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=100.00 E-value=6.6e-42 Score=309.01 Aligned_cols=242 Identities=20% Similarity=0.219 Sum_probs=166.8
Q ss_pred hhHHHH-HHhhHHHHHHHHhhccEEEEecCCCCChhHHHHHHHHhCCCCCCCccCCCCceeecCcee---ecCCCCCCCC
Q 020626 34 SFLTET-IRTQKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVF---TANESSLDRN 109 (323)
Q Consensus 34 ~~l~~~-~~~~~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~---~~~~~~~~~~ 109 (323)
.+|.++ .++.+++|+++|.+||+++||||++ +++++.+|+++||.+...+..+..++. ..|+ +++..+.+..
T Consensus 19 ~dl~~~l~~~~~~~l~~~l~~~Gvlvfr~q~l-~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~ 94 (277)
T PRK09553 19 IDLTRPLSDNQFEQLYHALLRHQVLFFRDQPI-TPQQQRDLAARFGDLHIHPVYPHAEGV---PEIIVLDTHNDNPPDND 94 (277)
T ss_pred cccCCcCCHHHHHHHHHHHHHCCEEEECCCCC-CHHHHHHHHHHhCCCccCCCCCCCCCC---CeEEEEeccCCCCCCCC
Confidence 356555 4667999999999999999999999 799999999999986522222122221 1122 2222222222
Q ss_pred ccccCCCCCCCCCCcEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHHHHHHhCCeEEEEEecCCCCCCCCCCCCcc
Q 020626 110 IPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWK 189 (323)
Q Consensus 110 ~~~HtD~sy~~~pP~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~~~L~~~~~~~~~~~~~~~~~~~~~~~~w~ 189 (323)
.||+|++|.+.||.+++|||++.|+.||+|.|||+++||+.|+ ++++++|+++.+.|. +... +.
T Consensus 95 -~wHtD~sy~~~pp~~~~L~~~~~p~~GG~T~fad~~~ay~~L~---~~~~~~l~~l~~~h~--~~~~----------~~ 158 (277)
T PRK09553 95 -NWHTDVTFIETPPLGAILAAKQLPSTGGDTLWASGIAAYEALS---APFRQLLSGLTAEHD--FRKS----------FP 158 (277)
T ss_pred -CCeecccCeeCCCceeEEEEEecCCCCCccHhhhHHHHHHhCC---HHHHHHhcCcEEEEc--chhh----------cc
Confidence 6999999999999999999999999999999999999999999 899999997665552 2110 00
Q ss_pred -cccccCChHHHHHHHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceeeeec-cchhccccccCCCCCCcceecCCC
Q 020626 190 -SIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNS-IVMAYTCWKDTQNDPVKAVTFGNG 267 (323)
Q Consensus 190 -~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~lf~~-~~~~~~~~~~~~~~~~~~~~~~dg 267 (323)
..+...... ...+.+... ..+...||+|++||+||++++|.+ .....+.++ .
T Consensus 159 ~~~~~~~~~~-----------~~~~~~~~~-~~~~~~hPlVr~hp~tG~k~L~~n~~~~~~i~gl--------------~ 212 (277)
T PRK09553 159 EYKYRKTEEE-----------HQRWEEAVA-KNPPLLHPVVRTHPVSGRQALFVNEGFTTRIVDL--------------S 212 (277)
T ss_pred cccccccccc-----------ccccccccc-cCCCCCCCeEEeCCCCCceeEEeccccccEeCCC--------------C
Confidence 000000000 000000000 112356999999999999998744 344444322 2
Q ss_pred CCCCHHHHHHHHHHH--HHhcccccccCCCEEEEecccccccCCCC-CCCceeeecc
Q 020626 268 SPYPEDIVYNLMKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSS-SRPRHILASL 321 (323)
Q Consensus 268 ~~~~~~~l~~l~~~~--~~~~~~~~w~~GDlli~DN~~~lH~R~~f-~g~Rr~l~~~ 321 (323)
.+.++++++.|.+.+ ++++|+|+|++||+|||||++++|+++++ .+.+|++.+.
T Consensus 213 ~~es~~ll~~L~~~~~~p~~~~~~~w~~GD~viwDNr~~~H~a~~~~~~~~R~~~R~ 269 (277)
T PRK09553 213 EKESEALLGFLFAHITKPEFQVRWRWQPNDVAIWDNRVTQHYANADYLPQRRIMHRA 269 (277)
T ss_pred HHHHHHHHHHHHHHhcCcCeEEEEecCCCCEEEEcCcceeEecccCCCCCceEEEEE
Confidence 234567777776654 67999999999999999999999999865 4566777654
No 3
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=100.00 E-value=4.9e-35 Score=274.27 Aligned_cols=225 Identities=19% Similarity=0.234 Sum_probs=160.0
Q ss_pred hHHHHH--HhhHHHHHHHHhhccEEEEecCCCCChhHHHHHHHHhCCCCCCCccC-CCCceeecCceeecCCCCCCCCcc
Q 020626 35 FLTETI--RTQKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGG-AAPRSHVVGRVFTANESSLDRNIP 111 (323)
Q Consensus 35 ~l~~~~--~~~~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~G~~~~~~~g~-~~~r~~~~~~v~~~~~~~~~~~~~ 111 (323)
++.+.+ ++....+.++|.+||+++|||+++ +++++.+|+++||++.....|. ..++.... ..+..++...++
T Consensus 114 d~~~~~~~~~~~~~~~~~l~~~G~v~~rg~~~-~~~~~~~~~~~~G~~~~~~~g~~~~v~~~~~----~~~~~yt~~~l~ 188 (366)
T TIGR02409 114 DHEAVMKDDSVLLDWLSAVRDVGIAVLKGAPT-KPGAVEKLGKRIGFIRETNYGLLFEVRLKAD----ANNLAYTNGGLP 188 (366)
T ss_pred eHHHHhCCHHHHHHHHHHHHhccEEEEeCCCC-CHHHHHHHHHHhccccccCCCCeEEEEecCC----cccccccccccc
Confidence 344444 234667788999999999999998 8999999999999875433332 12222111 111223346789
Q ss_pred ccCCCCCCCCCCcEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHHHHHHhCCeEEEEEecCCCCCCCCCCCCcccc
Q 020626 112 FHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSI 191 (323)
Q Consensus 112 ~HtD~sy~~~pP~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 191 (323)
||||++|.+.||++++|+|+++|..||+|.|+|+.+||+.|+++.|+.++.|....+.|... ..
T Consensus 189 ~HtD~~y~~~pP~~~~L~c~~~~~~GG~T~~~d~~~~~~~L~~~~p~~~~~L~~~~~~~~~~-~~--------------- 252 (366)
T TIGR02409 189 FHTDNPYRDHPPGLQLLHCLESTVEGGDSLFVDGFAVAEALRVENPEAFRILTSTPVEFREE-GD--------------- 252 (366)
T ss_pred ccccCCccCCCCceeeeeecccCCCCcceeeeeHHHHHHHHhHhCHHHHHHHhcCccceEEc-CC---------------
Confidence 99999999999999999999999999999999999999999999999999999755444321 00
Q ss_pred cccCChHHHHHHHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCc--eeeeeccchhccccccCCCCCCcceecCCCCC
Q 020626 192 FLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQR--KIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSP 269 (323)
Q Consensus 192 f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~--~~lf~~~~~~~~~~~~~~~~~~~~~~~~dg~~ 269 (323)
+. ......||+|..||. |+ .+.|++.....+.+++ ..
T Consensus 253 ------------------------~~--~~~~~~~Pvi~~~~~-g~~~~~~~~~~~~~~~~~~~--------------~~ 291 (366)
T TIGR02409 253 ------------------------DV--HDLRARHPVIELDDD-GEVVKIRFNNASRDWFFDVP--------------PS 291 (366)
T ss_pred ------------------------Cc--eeeEeccCEEEECCC-CCEEEEEeCCcccCccCCCC--------------HH
Confidence 00 112357999999995 76 5566653221111110 01
Q ss_pred CCH---HHHHHHHHHH--HHhcccccccCCCEEEEecccccccCCCCC---CCceeeecc
Q 020626 270 YPE---DIVYNLMKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSSS---RPRHILASL 321 (323)
Q Consensus 270 ~~~---~~l~~l~~~~--~~~~~~~~w~~GDlli~DN~~~lH~R~~f~---g~Rr~l~~~ 321 (323)
..+ ++++.|.+.+ ++++++|+|+|||+|||||+++||||++|+ |.|.+.++.
T Consensus 292 ~~~~~~~al~~l~~~~~~p~~~~~~~l~pGd~vi~DN~rvlH~R~af~~~~~~R~L~g~Y 351 (366)
T TIGR02409 292 RVQDFYAAYRRFTELIEQPRFKFTFKLEPGDLVLFDNTRLLHARDAFSNPEGKRHLQGCY 351 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcccEEEEEcCCCcEEEEeceEEeecCCCcCCCCCceEEEEEE
Confidence 112 3344555543 478999999999999999999999999996 577776653
No 4
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=100.00 E-value=7.4e-35 Score=272.20 Aligned_cols=228 Identities=18% Similarity=0.184 Sum_probs=161.6
Q ss_pred hhHHHHHHHHhhccEEEEecCCCCChhHHHHHHHHhCCCCCCCccCCC-CceeecCceeecCCCCCCCCccccCCCCCCC
Q 020626 42 TQKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAA-PRSHVVGRVFTANESSLDRNIPFHQEMALLP 120 (323)
Q Consensus 42 ~~~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~G~~~~~~~g~~~-~r~~~~~~v~~~~~~~~~~~~~~HtD~sy~~ 120 (323)
+....+.++|.+||+++|||+++ +++++++|+++||++...+.|... ...... ..+...++..++||||++|.+
T Consensus 115 ~~l~~~l~~l~~~G~v~~~g~~~-~~~~~~~~a~riG~~r~t~~g~~~~v~~~~~----~~~~ayt~~~l~~HtD~~y~~ 189 (362)
T TIGR02410 115 STLKSFSKNIYKYGFTFVDNVPV-TPEATEKLCERISIIRPTHYGGFWDFTSDLS----KNDTAYTSLAIDMHTDGTYWD 189 (362)
T ss_pred HHHHHHHHHHHhhCEEEEcCCCC-CHHHHHHHHHHhccceecCCCCeEEEEecCC----CcccccccCCccccccCCCCC
Confidence 34667788999999999999998 899999999999997544444211 111100 111223345789999999999
Q ss_pred CCCcEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHHHHHHhCCeEEEEEecCCCCCCCCCCCCcccccccCChHHH
Q 020626 121 QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLA 200 (323)
Q Consensus 121 ~pP~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 200 (323)
.||++++|+|+++|..||+|+|+|+.+||+.|+++.|+.++.|.+..+.|......
T Consensus 190 ~pp~~~~L~c~~~~~~GG~t~~~d~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~~------------------------ 245 (362)
T TIGR02410 190 ETPGLQLFHCLTHDGTGGETVLVDGFYCAEQLRKEAPEDFELLTKVPIPHHYSGES------------------------ 245 (362)
T ss_pred CCCcceeEeeeecCCCCCceeeeeHHHHHHHHhhhChHHHHHHhcCccceEEccCc------------------------
Confidence 99999999999999999999999999999999999999999999766555321000
Q ss_pred HHHHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceeeeeccchhccccccCCCCCCcceecCCCCC--CCHHHHHHH
Q 020626 201 EERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSP--YPEDIVYNL 278 (323)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~lf~~~~~~~~~~~~~~~~~~~~~~~~dg~~--~~~~~l~~l 278 (323)
+.........||+|+.||.+|+...++........ ++ .+.++.... ...+++..|
T Consensus 246 ---------------~~~~~~~~~~~Pvi~~~p~~G~~~~ir~~~~~r~~-~~-------~~~~~~~~~~~~~~~Al~~l 302 (362)
T TIGR02410 246 ---------------DSVFIHPDYPQPVLTLDPSTGELTQIRWNNSDRAV-MD-------CLNWSSPYDVPKFYKAIRRF 302 (362)
T ss_pred ---------------CceeeeeccCCCEEEecCCCCcEEEEEcCCCcccc-cc-------cCCCCCHHHHHHHHHHHHHH
Confidence 00001223468999999999997654321111100 00 000000000 012566666
Q ss_pred HHHH--HHhcccccccCCCEEEEecccccccCCCCCCCceeeecc
Q 020626 279 MKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASL 321 (323)
Q Consensus 279 ~~~~--~~~~~~~~w~~GDlli~DN~~~lH~R~~f~g~Rr~l~~~ 321 (323)
.+.+ ++++++|+|+|||+|||||+++||||++|+|.|++.++.
T Consensus 303 ~~~~~~p~~~~~~~l~pGd~vi~DN~rvLHgRtaf~g~R~L~G~Y 347 (362)
T TIGR02410 303 NKIITDPDNEIEFKLRPGTVLIFDNWRVLHSRTSFTGYRRMCGCY 347 (362)
T ss_pred HHHhcChhcEEEEEcCCccEEEEeeEEEeecCCCcCCceEEEEEE
Confidence 6655 469999999999999999999999999999998887764
No 5
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=100.00 E-value=9.5e-35 Score=259.88 Aligned_cols=225 Identities=24% Similarity=0.365 Sum_probs=159.2
Q ss_pred HhhHHHHHHHHhhccEEEEecCCCCChhHHHHHHHHhCCCCC----CCccCC-CCceeecCceeecCCCC--CCCCcccc
Q 020626 41 RTQKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEEL----PYVGGA-APRSHVVGRVFTANESS--LDRNIPFH 113 (323)
Q Consensus 41 ~~~~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~G~~~~----~~~g~~-~~r~~~~~~v~~~~~~~--~~~~~~~H 113 (323)
++..++|+++|.++|+|+|||+++ +.+++.+|++.||.+.. ...|.. ..+.... .++.....+ +...++||
T Consensus 23 ~~~~~~~~~~l~~~G~vvlrg~~~-~~~~~~~~~~~~G~~~~~~~~~~~g~~~~v~~~~~-~~~~~~~~~~~~~~~l~~H 100 (258)
T PF02668_consen 23 DEELEELREALAEYGFVVLRGFPL-DPEQFEALASRLGPLMSHPRSTFYGDIWDVRSVIP-EVEDSSYTPSSSNGELPWH 100 (258)
T ss_dssp HCHHHHHHHHHHHHSEEEEESCTS-SHHHHHHHHHHHSEBEEESSSSECCSCEEEEEECT-TEETTTTSTTT-SSGEEEE
T ss_pred HHHHHHHHHHHhcccEEEEcCCCC-CHHHHHHHHHhhCcccccccccccccccccccccc-cccccccCChhhhcccccc
Confidence 357888999999999999999998 89999999999996521 111210 0111111 222222222 24579999
Q ss_pred CCCCCCCCCCcEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHHHHHHhCCeEEEEEecCCCCCCCCCCCCcccccc
Q 020626 114 QEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFL 193 (323)
Q Consensus 114 tD~sy~~~pP~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~ 193 (323)
||++|.+.||++++|+|+++|..||+|.|+|+.++|+.|+ |++++.|+ .++.|.+..... ..
T Consensus 101 tD~~~~~~~p~~~~L~c~~~~~~GG~T~~~d~~~~~~~L~---pe~~~~L~-~~~~~~~~~~~~---------~~----- 162 (258)
T PF02668_consen 101 TDGSYWPYPPDYLALYCLRPAEEGGETTFADARAVYERLS---PELLERLQ-EPVRYIRRFPSS---------RY----- 162 (258)
T ss_dssp -TTTTSTTEESEEEEEEEEEESSSSEEEEEEHHHHHHCSH---HHHHHHHC-TTEEEEEECGGS---------SG-----
T ss_pred cccCcccCCcceeEEEeeccCCCCCccccccHHHHHhhCC---HHHHhhhh-ceeeEeeccccc---------cc-----
Confidence 9999999999999999999999999999999999999999 99999998 488887654321 00
Q ss_pred cCChHHHHHHHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceeeeeccchhccccccCCCCCCcceecCCCCCCCHH
Q 020626 194 TEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPED 273 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~lf~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~ 273 (323)
. . ......+|+|..||.||++++|++.......++ ...+...+
T Consensus 163 -~--------------------~---~~~~~~~Piv~~~p~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 205 (258)
T PF02668_consen 163 -E--------------------E---LRPSQSHPIVRTHPETGRKILYSSPFASRFQGP-------------PDLEESQE 205 (258)
T ss_dssp -S--------------------C---CSEEEEEESEEEETTTTCEEECESTTEEEETTS-------------CEHHHHHH
T ss_pred -c--------------------c---cCCceEeeEEEEcCcccceeEecccceeeecCc-------------CChHHHHH
Confidence 0 0 123567999999999999999877611111000 00112345
Q ss_pred HHHHHHHHH--HHhcccccccCCCEEEEecccccccCCCC--CCCceeeeccc
Q 020626 274 IVYNLMKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSS--SRPRHILASLC 322 (323)
Q Consensus 274 ~l~~l~~~~--~~~~~~~~w~~GDlli~DN~~~lH~R~~f--~g~Rr~l~~~~ 322 (323)
+++.|.+.+ .++++.|+|++||++||||+++||||++| .+.+|+|.++|
T Consensus 206 ~~~~l~~~l~~~~~~~~~~~~~GDlli~dN~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 206 ALAALDALLKDPEYTYRHRWQPGDLLIWDNHRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp HHHHHHHHHTSGGGEEEEE--TTEEEEEETTTEEEEE--E-STTSSEEEEEEE
T ss_pred HHHHHHHHHhChhhcccccCCCceEEEEcCCeeEecCCCCCCCCCCEEEEEeC
Confidence 667777655 58999999999999999999999999999 34566666554
No 6
>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.5e-34 Score=252.71 Aligned_cols=252 Identities=18% Similarity=0.178 Sum_probs=170.2
Q ss_pred CCCceEEecCCCCChhhHHHHHHhhHHHHHHHHhhccEEEEecC-CCCChhHHHHHHHHhCCCCCCCccC----CCCcee
Q 020626 19 IPFPWVLTPNSTTNLSFLTETIRTQKPFLESLLLKAGAVLLRGF-DVKTANDFNDVVEAFGYEELPYVGG----AAPRSH 93 (323)
Q Consensus 19 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~Gvvl~rg~-~~~~~e~~~~~~~~~G~~~~~~~g~----~~~r~~ 93 (323)
+.+.+.|++..... +|. +...++|++++.++|+|+||+| .+ +++++.+++.+||.....+... ..+...
T Consensus 12 ~~~Ga~i~~l~~~~--~l~---~~~~~~i~~~~~~~~vv~fR~q~~~-d~a~q~~~~~~fG~~~~~~~~~~~~~~~~ei~ 85 (286)
T COG2175 12 PRLGAEIEGLDLPA--PLS---DATVDAIRRAVLEHKVVFFRDQAHL-DDAEQLALARRFGELHIHPTPAVHLEGHPEIL 85 (286)
T ss_pred CccceEEeccCCCC--ccC---hhhHHHHHHHHHHcCEEEEcCCCCC-ChHHHHhhhhhceeeEeeccCcccccCCCcee
Confidence 45777887776431 222 2368999999999999999999 77 7888888999999763211110 111111
Q ss_pred ecCceeecCCCCCCCCccccCCCCCCCCCCcEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHHHHHHhCCeEEEE-
Q 020626 94 VVGRVFTANESSLDRNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTR- 172 (323)
Q Consensus 94 ~~~~v~~~~~~~~~~~~~~HtD~sy~~~pP~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~~~L~~~~~~~~~- 172 (323)
...+. ..+..| +. ..||+|.+|.+.||.+.+|+|++.|..||+|+|+|+.+||+.|++ .+++.+.+....|..
T Consensus 86 ~~~~~-~~~~~p-~~-~~wH~D~~f~~~~p~~~~l~~v~~P~~gg~T~f~d~~~A~~~L~~---~~r~~~~gl~~~h~~~ 159 (286)
T COG2175 86 VYDNA-EGNGMP-DN-AVWHTDVTFLETPPAGSILQAVELPSTGGDTLFADTAAAYETLPE---PLRELLRGLPAHHSNE 159 (286)
T ss_pred Eeccc-ccCCCC-cc-ccCcccceeecCCCceeEEEEeecCCCCCCceeechHHHHHhccH---HHHHHHhcchhccccc
Confidence 11110 011122 33 679999999999999999999999999999999999999999995 568888865554431
Q ss_pred -EecCCCCCCCCCCCCcccccccCChHHHHHHHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceeeeec-cchhccc
Q 020626 173 -IYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNS-IVMAYTC 250 (323)
Q Consensus 173 -~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~lf~~-~~~~~~~ 250 (323)
.+... ....++... ..+.+ +.+ ..+...||+|++||+||++++|.+ .....+.
T Consensus 160 ~~~~~~-----~~~~~~~p~------~~~~~--------~~~------~~~~~~~Pvvr~hP~~g~~~l~~n~~~~~~i~ 214 (286)
T COG2175 160 ERFPRE-----RPSKTERPH------ARFRE--------IVR------KNPPTEHPVVRTHPETGEKALFVNEGFTTRIV 214 (286)
T ss_pred cccccc-----ccCcCcCcc------chhhh--------hhc------cCCcccCceEEeCCCcCceeeeecCCcceecc
Confidence 11110 001111110 00000 000 234568999999999999998744 3555543
Q ss_pred cccCCCCCCcceecCCCCCCCHHHHHHHHHHH--HHhcccccccCCCEEEEecccccccCCCCCC-Cceeeecc
Q 020626 251 WKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSSSR-PRHILASL 321 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~dg~~~~~~~l~~l~~~~--~~~~~~~~w~~GDlli~DN~~~lH~R~~f~g-~Rr~l~~~ 321 (323)
+.+ ...++++++.|.+.. ++++|+++||+||||||||+++||+|++|.+ .||++.+.
T Consensus 215 g~~--------------~~~~~~ll~~L~~~~~~pe~~~r~~wq~gDivIwDNr~~lH~a~~~~~~~~R~l~R~ 274 (286)
T COG2175 215 GLP--------------PKESEALLAELQAHLTDPENQYRHRWQPGDIVIWDNRATLHAATAFYADQRRILHRC 274 (286)
T ss_pred CCC--------------HHHHHHHHHHHHHhhcChhhEEEEecCCCCEEEEeCcceeeccccCCccceEEEEEe
Confidence 322 223457888887764 6899999999999999999999999999875 47766543
No 7
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=100.00 E-value=2.8e-32 Score=244.90 Aligned_cols=220 Identities=18% Similarity=0.203 Sum_probs=158.1
Q ss_pred hHHHHHHHHhhccEEEEecCCCCChhHHHHHHHHhCCCCCCCccCCCCceeecCceeecCCCCCCCCccccCCCCCCCCC
Q 020626 43 QKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDRNIPFHQEMALLPQF 122 (323)
Q Consensus 43 ~~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~~~~HtD~sy~~~p 122 (323)
...++..++.++|+++|+|++. +.+++.+++.+||.....+.+...+-.... + ..+...++..++||||++|.+.|
T Consensus 33 ~~~~~l~~~~~~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~-~--~~~~~~t~~~l~~HtD~~y~~~p 108 (262)
T cd00250 33 PLGKLLLASAGVGFAELEGAPL-DPAALLGLAERIGFIRGTLYGDVVPVPGKE-N--AQNGAYTNTLLPLHTDLAYHEYR 108 (262)
T ss_pred HHHHHHHHHHHhcEEEEeCCCC-CHHHHHHHHHHhcccccccCCCeEEeccCC-C--ccccccccCCcCccccCCCCCCC
Confidence 4666778999999999999998 899999999999976544444221111000 0 11223456788999999999999
Q ss_pred CcEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHHHHHHhCCeEEEEEecCCCCCCCCCCCCcccccccCChHHHHH
Q 020626 123 PSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEE 202 (323)
Q Consensus 123 P~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~ 202 (323)
|++++|+|+++|..||+|.|+|+.++|+.|.++.|++++.|++..+.|.......
T Consensus 109 p~~~~L~cl~~~~~GG~T~~vd~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~~~------------------------- 163 (262)
T cd00250 109 PGLQILHCLRNTATGGATLLVDGFRVALKLLREDPEAFELLSRVPVRHAYPGSSG------------------------- 163 (262)
T ss_pred CceEEEEEeccCCCCCcceeeeHHHHHHHHHhhCHHHHHHHhCCCeeEEEcCCCc-------------------------
Confidence 9999999999999999999999999999998777999999998777775321100
Q ss_pred HHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceee-eeccchhccccccCCCCCCcceecCCCCCCCHHHHHHHHHH
Q 020626 203 RAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW-FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKI 281 (323)
Q Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~l-f~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~l~~l~~~ 281 (323)
.. ......||+|..|| |.+++ |+...... .+ . ++.+...++++.|.+.
T Consensus 164 --------------~~-~~~~~~~Pii~~~~--~~~~~r~~~~~~~~---------~p----~-~~~~~~~~al~~l~~~ 212 (262)
T cd00250 164 --------------TM-FSSYQLAPVLELDP--EDPVLRYNNYDNFS---------VP----F-DEVKEAYEALAELVAL 212 (262)
T ss_pred --------------cc-eeeecccCEEEeCC--CccEEEEeCCCCCC---------CC----H-HHHHHHHHHHHHHHHH
Confidence 00 12345699999999 55544 33221000 00 0 0001234667777776
Q ss_pred HH--HhcccccccCCCEEEEecccccccCCCCCC---Cceeeeccc
Q 020626 282 LE--EECVAIPWQNGDVLLIDNLAVLHARRSSSR---PRHILASLC 322 (323)
Q Consensus 282 ~~--~~~~~~~w~~GDlli~DN~~~lH~R~~f~g---~Rr~l~~~~ 322 (323)
+. +++++|+|++||+|||||+++||||++|++ .+|+|.+++
T Consensus 213 ~~~~~~~~~~~l~~Gdivi~DN~r~lHgR~~f~~~~~~~R~L~r~~ 258 (262)
T cd00250 213 IEDPDNQLTVKLEPGDLLIFDNRRVLHGRTAFSPRYGGDRWLKGCY 258 (262)
T ss_pred HcChhhEEEEEcCCCCEEEEechhhhcCCCCCCCCCCCceEEEEEE
Confidence 54 489999999999999999999999999975 456665543
No 8
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.93 E-value=5.5e-25 Score=195.18 Aligned_cols=224 Identities=21% Similarity=0.254 Sum_probs=147.8
Q ss_pred hHHHHHHHHhhccEEEEecCCCCChhHHHHHHHHhCCCCCCCccC-CCCceeecCceeecCCCCCCCCccccCCCCCCCC
Q 020626 43 QKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGG-AAPRSHVVGRVFTANESSLDRNIPFHQEMALLPQ 121 (323)
Q Consensus 43 ~~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~G~~~~~~~g~-~~~r~~~~~~v~~~~~~~~~~~~~~HtD~sy~~~ 121 (323)
..++|. +|..+|+++++|-|. +.....++++++|++..+..|. ..++.+.. ++|-++....+++|||+.|...
T Consensus 153 l~qwLq-aL~~~GiA~lkGAP~-~~~~v~kl~~RiG~irrT~yGe~F~V~ak~~----asn~Ay~~~~LPlHTD~P~le~ 226 (407)
T KOG3888|consen 153 LFQWLQ-ALAKYGIAFLKGAPL-DSGVVRKLGERIGFIRRTTYGETFEVQAKPD----ASNYAYLAGPLPLHTDLPYLEY 226 (407)
T ss_pred HHHHHH-HHHhheeEEEecCCC-CchHHHHHHhhhcceeeeeccceEEEeecCC----cccceeecCCCCcccCCccccc
Confidence 355555 889999999999998 7789999999999987655552 22222222 2233344578999999999999
Q ss_pred CCcEEEeecccCCCC-CCCcccccHHHHHHHhhhhChHHHHHHHhCCeEEEEEecCCCCCCCCCCCCcccccccCChHHH
Q 020626 122 FPSKLFFFCEVEPVS-GGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLA 200 (323)
Q Consensus 122 pP~~~~L~c~~~p~~-GGeT~~ad~~~a~~~L~~~~pe~~~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 200 (323)
||++++|+|+...++ ||.++|+|++.|.+.|.+++||.++.|....+-|..-.... + ..+ +.
T Consensus 227 ~PgvqiLH~l~qtes~gg~n~lvDgF~Va~~lr~~~pE~FeiL~~~pVd~~dig~D~-~----------~~~------~f 289 (407)
T KOG3888|consen 227 PPGVQILHCLVQTESPGGMNLLVDGFYVAEQLRESHPEAFEILSSVPVDWIDIGSDG-D----------YYI------EF 289 (407)
T ss_pred CCcceeeeeehhccCCCCcceehhhHHHHHHHHhhCHHHHHHHhhcceeeEeecCCc-c----------ccc------ch
Confidence 999999999998887 99999999999999999999999999998777765321111 0 000 00
Q ss_pred HHHHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceeeeeccchhccccccCCCCCCcceecCCCCCCC---HHHHHH
Q 020626 201 EERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYP---EDIVYN 277 (323)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~lf~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~---~~~l~~ 277 (323)
... ..||++.-+-+ |+-.-.|........ .|....+.- -+.++.
T Consensus 290 h~i--------------------~r~~vI~ld~e-gr~~rIN~s~~~Rds------------~fdvp~e~v~~~y~a~~~ 336 (407)
T KOG3888|consen 290 HNI--------------------WRAPVICLDDE-GRVVRINFSNPQRDS------------IFDVPVEQVQPWYRALKL 336 (407)
T ss_pred hhh--------------------hcCceEEEccc-ceEEEEecCCccccc------------cccCCHHHHHHHHHHHHH
Confidence 001 12333333222 322111110000000 010000000 145555
Q ss_pred HHHHHH--HhcccccccCCCEEEEecccccccCCCCCC----Cceeeeccc
Q 020626 278 LMKILE--EECVAIPWQNGDVLLIDNLAVLHARRSSSR----PRHILASLC 322 (323)
Q Consensus 278 l~~~~~--~~~~~~~w~~GDlli~DN~~~lH~R~~f~g----~Rr~l~~~~ 322 (323)
+.+.+. .++++|+.++||+++|||+|++|||++|++ .|.+.++.+
T Consensus 337 F~~~~~~~~n~~~fk~~~gdvv~FnN~RlLHgr~gy~~~~en~R~L~GaY~ 387 (407)
T KOG3888|consen 337 FVELANSFSNQFRFKTPPGDVVTFNNLRLLHGRTGYEDTPENQRHLVGAYF 387 (407)
T ss_pred HHHHHhCcccceEEECCCCCEEEEcceeeeccccccccCccccceeeeeEe
Confidence 555544 456999999999999999999999999964 577777654
No 9
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.91 E-value=3.3e-24 Score=183.87 Aligned_cols=217 Identities=19% Similarity=0.215 Sum_probs=153.9
Q ss_pred HHHHHHHHhhccEEEEecCCCCChhHHHHHHHHhCCCCCCCccCCCCceeecCceeecCCCCCCCCccccCCCCCCCCCC
Q 020626 44 KPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDRNIPFHQEMALLPQFP 123 (323)
Q Consensus 44 ~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~G~~~~~~~g~~~~r~~~~~~v~~~~~~~~~~~~~~HtD~sy~~~pP 123 (323)
...+-+-|.+||++++.|.+. +.+.-+.+++++-++..++.|....-++-.. -.+.+++...++.|||.+|...+|
T Consensus 127 l~sf~~nlv~YGi~fvd~V~p-T~e~TEkl~~r~~pv~~TffG~mW~Fsd~p~---~~DTAYtkl~lg~HTD~TYF~~~~ 202 (371)
T KOG3889|consen 127 LQSFSKNLVKYGIIFVDGVEP-TSEATEKLCQRLVPVHDTFFGQMWVFSDEPA---YEDTAYTKLELGPHTDGTYFDQTP 202 (371)
T ss_pred HHHHHHHHHheeEEEEcCCCc-hhHHHHHHHHHhhHHHHhhhheeEEecCCCc---cccccceeeeecccCCCceeccCC
Confidence 344555788999999999997 8899999999987654444442211000000 011223456789999999999999
Q ss_pred cEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHHHHHHhCCeEEEEEecCCCCCCCCCCCCcccccccCChHHHHHH
Q 020626 124 SKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEER 203 (323)
Q Consensus 124 ~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 203 (323)
++++|+|+..+.+||+|.|+|+..+.+.|.++.|+-++.|++..+... +-.+.
T Consensus 203 GiQvfHCl~h~gtGG~t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~he--YiE~~------------------------- 255 (371)
T KOG3889|consen 203 GIQVFHCLTHAGTGGDTVLVDGFYCAEKLRNESPEDFEILCNVKISHE--YIEGS------------------------- 255 (371)
T ss_pred CceEEEeecccCCCCceEEEehHHHHHHHHhhChHhhhHhhcCccchh--hhcCC-------------------------
Confidence 999999999999999999999999999999999999999997655432 11110
Q ss_pred HHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceee--eeccchhccccccCCCCCCcceecCCCCCCCHHHHHHHHHH
Q 020626 204 AANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW--FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKI 281 (323)
Q Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~l--f~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~l~~l~~~ 281 (323)
.+........-|+|...|-+|+... ||..-..- -..++.+.+.+++++
T Consensus 256 ------------ge~h~H~v~~~p~v~~~p~~~e~~qiR~N~YDRAv------------------fnt~p~ae~~~fY~a 305 (371)
T KOG3889|consen 256 ------------GESHIHSVSLEPPVIERPSFGEITQIRFNPYDRAV------------------FNTLPAAETIKFYEA 305 (371)
T ss_pred ------------CcccceeeccCCceEecCCCCceEEEEecccchhh------------------hccCCHHHHHHHHHH
Confidence 0000111123488888898887653 44321111 123555555555543
Q ss_pred H---------HHhcccccccCCCEEEEecccccccCCCCCCCceeeecc
Q 020626 282 L---------EEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASL 321 (323)
Q Consensus 282 ~---------~~~~~~~~w~~GDlli~DN~~~lH~R~~f~g~Rr~l~~~ 321 (323)
+ +++.+.++++||-++++||+|+||||+.|+|.|.+.++.
T Consensus 306 ~r~l~~i~r~p~n~~~ikL~PGsvifiDNwRvLHgRe~ftGyRqmcGcY 354 (371)
T KOG3889|consen 306 YRKLSKICRNPDNSIEIKLRPGSVIFIDNWRVLHGRESFTGYRQMCGCY 354 (371)
T ss_pred HHHHHHHhcCccceEEEEecCceEEEEeceeEecCcccccchhhhccee
Confidence 3 468899999999999999999999999999999887653
No 10
>PRK02963 carbon starvation induced protein; Validated
Probab=99.87 E-value=1.9e-21 Score=173.74 Aligned_cols=195 Identities=17% Similarity=0.202 Sum_probs=126.7
Q ss_pred hccEEEEecCCCC---ChhHHHHHHHHhCC-CCCCCccCCCC----ceeecCceeecCCC-C-CCCCccccCCCCCCCCC
Q 020626 53 KAGAVLLRGFDVK---TANDFNDVVEAFGY-EELPYVGGAAP----RSHVVGRVFTANES-S-LDRNIPFHQEMALLPQF 122 (323)
Q Consensus 53 ~~Gvvl~rg~~~~---~~e~~~~~~~~~G~-~~~~~~g~~~~----r~~~~~~v~~~~~~-~-~~~~~~~HtD~sy~~~p 122 (323)
++|..++--..++ ++++++++++++|. +..++.|+... +-.+... ..++.. . ....+++|||++|...|
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~I~~t~fg~m~g~~ya~F~Vk~~-~~~~~ya~~a~t~L~lHTD~pY~e~p 163 (316)
T PRK02963 85 AEGAFLINAVGIDDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNV-DNSDSYLRQPHRVMELHNDGTYVEEI 163 (316)
T ss_pred ccCceEeecccCCccCCHHHHHHHHHHhhhccCCCCccccccceeeEEEEEec-CCccchhhhhccCCCCcCCCCCccCC
Confidence 5777777655553 68999999999998 55555543220 1111100 001111 0 11248999999999999
Q ss_pred CcEEEeecccC-CCCCCCcccc--cHHHHHHHhhhhChHHHHHHHhCCeEEEEEecCCCCCCCCCCCCcccccccCChHH
Q 020626 123 PSKLFFFCEVE-PVSGGDTPLV--LSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSL 199 (323)
Q Consensus 123 P~~~~L~c~~~-p~~GGeT~~a--d~~~a~~~L~~~~pe~~~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 199 (323)
|++++|+|... ...||+|.|+ |+.++.+.|.+ +| |.+.++.|..... +
T Consensus 164 PGlQlLl~~~~~~~~GGeS~lVhvDGF~vAe~Lr~-~P-----Lt~~pV~~~~~~~-------------------~---- 214 (316)
T PRK02963 164 TDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHFFR-HP-----LARRPMRWAAPPS-------------------K---- 214 (316)
T ss_pred CCceeeeeeccCCCCCcCeeeEcCCcHHHHHHHHh-Cc-----CcCCceeeeecCC-------------------C----
Confidence 99976777654 4789999997 99999999996 67 7877776642110 0
Q ss_pred HHHHHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceee-eeccchhccccccCCCCCCcceecCCCCC---CCHHHH
Q 020626 200 AEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW-FNSIVMAYTCWKDTQNDPVKAVTFGNGSP---YPEDIV 275 (323)
Q Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~l-f~~~~~~~~~~~~~~~~~~~~~~~~dg~~---~~~~~l 275 (323)
. ......+|++..++ .|+..+ ||... ..| .....+
T Consensus 215 -----------------~--~~~~~~~PVI~lD~-~G~l~ir~nd~~---------------------~~P~~~~~~~Y~ 253 (316)
T PRK02963 215 -----------------N--VSKDVFHPVFDVDQ-QGRPVMRYIDQF---------------------VQPKDFEEGVWL 253 (316)
T ss_pred -----------------c--cceeeecceEEECC-CCCEEEEEcCCC---------------------CCChHHHHHHHH
Confidence 0 11234689888886 587753 33110 011 112234
Q ss_pred HHHHHHH--HHhcccccccCCCEEEEecccccccCCCCCC---Cceee
Q 020626 276 YNLMKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSSSR---PRHIL 318 (323)
Q Consensus 276 ~~l~~~~--~~~~~~~~w~~GDlli~DN~~~lH~R~~f~g---~Rr~l 318 (323)
..+.+.+ +++++.++++|||++++||+|+||||++|++ .+|+|
T Consensus 254 ~~f~~~L~~p~~~~~fkL~pGd~vvfDN~RVLHGR~aF~~~~g~~R~L 301 (316)
T PRK02963 254 SELSDALETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRREL 301 (316)
T ss_pred HHHHHHHhCchhEEEEecCCceEEEEeCeEEeeCCCCcCCCCCCceEE
Confidence 4444443 4688999999999999999999999999963 44544
No 11
>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family. CsiD of Escherichia coli is induced on carbon starvation. Its expression is sigma-S dependent and additionally requires activation by cAMP-CRP []. The exact function and role of CsiD is unknown, but a putative role may involve the control of utilisation of gamma-aminobutyric acid and glutamate accumulation in general stress adaption []. ; GO: 0005506 iron ion binding; PDB: 2R6S_A 1JR7_A.
Probab=98.31 E-value=2.4e-06 Score=74.05 Aligned_cols=195 Identities=16% Similarity=0.211 Sum_probs=81.9
Q ss_pred hccEEEEecCCCC---ChhHHHHHHHHh----CCCCC-CCccCCCCceeecCceeecCCC--CCCCCccccCCCCCCCCC
Q 020626 53 KAGAVLLRGFDVK---TANDFNDVVEAF----GYEEL-PYVGGAAPRSHVVGRVFTANES--SLDRNIPFHQEMALLPQF 122 (323)
Q Consensus 53 ~~Gvvl~rg~~~~---~~e~~~~~~~~~----G~~~~-~~~g~~~~r~~~~~~v~~~~~~--~~~~~~~~HtD~sy~~~p 122 (323)
++|..++--+.+. ..+.+++|+.++ |...+ ...|..-.|-.+. |+=.++.+ .....+.+|||++|....
T Consensus 72 ~~G~f~i~~~g~~~~~q~d~~Vk~sTAi~HLiG~pNfDaMsGkYYARF~Vk-n~DnSDSYLRqa~r~meLHnDGTyV~E~ 150 (297)
T PF08943_consen 72 NTGAFLIGPEGLDQVEQADDMVKFSTAISHLIGRPNFDAMSGKYYARFVVK-NTDNSDSYLRQAYRRMELHNDGTYVDER 150 (297)
T ss_dssp T--EEEEEETT--SGGGHHHHHHHHHHHHHHHEEE---TTTSSSSEEEEEE---------TT-TT--EEEE-S-TTSSS-
T ss_pred ccCceEeccccccchhchhhhHhHHHHHHHHhCCCchhhcCceeEEEEEEe-cCCCchhhhhcccceeeeecCCceeccc
Confidence 5888888777663 356777777665 43322 1122222233221 11111111 234567899999999999
Q ss_pred CcEEEeecc-cCCCCCCCcccccHHHHHHHhhhhChHHH-HHHHhCCeEEEEEecCCCCCCCCCCCCcccccccCChHHH
Q 020626 123 PSKLFFFCE-VEPVSGGDTPLVLSHIVYERMKESYPEFV-QQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLA 200 (323)
Q Consensus 123 P~~~~L~c~-~~p~~GGeT~~ad~~~a~~~L~~~~pe~~-~~L~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 200 (323)
-+++++.=. +.-..||+|.+-..-. |++|. .+. .-|.+..+.+.. +.+ +
T Consensus 151 TD~vLMmKidEqN~~GG~S~lLHLDD-We~ld----~f~~hplak~~~~w~a--P~S-----------------K----- 201 (297)
T PF08943_consen 151 TDWVLMMKIDEQNMEGGESLLLHLDD-WEDLD----KFYNHPLAKQPFVWGA--PPS-----------------K----- 201 (297)
T ss_dssp --EEEEEEEEEES--B--EEEEEGGG--TTHH----HHHTSGGGGS-EEE----SS------------------T-----
T ss_pred cceeeeeeehhhhccCcceeeeeccc-HHHHH----HHhcCcccccceeecC--CCC-----------------c-----
Confidence 999877765 3455899999764321 23332 111 223433333321 100 0
Q ss_pred HHHHHHcCCcEEEecCCceEEEEeeeCeeEecCCCCceee-eeccchhccccccCCCCCCcceecCCCCCCCHHHHHHHH
Q 020626 201 EERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW-FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLM 279 (323)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~~p~v~~hP~TG~~~l-f~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~l~~l~ 279 (323)
. +.....||++..--..|+|+. |...... |.+ + ..-..|..|-
T Consensus 202 -----------------N-v~~~v~hpvFF~~d~~g~P~m~fIDQF~q-----------P~n--~-----eeg~~L~~ls 245 (297)
T PF08943_consen 202 -----------------N-VSYDVEHPVFFEEDSNGKPHMSFIDQFVQ-----------PKN--M-----EEGLYLNELS 245 (297)
T ss_dssp -----------------T-----EEE-S-EEE-TTS-EEE---TTTEE-------------S--H-----HHHHHHHHHH
T ss_pred -----------------c-ccceeeccccccccCCCCeeEEEeeccCC-----------CCc--H-----HHHHHHHHHH
Confidence 0 223456888433334588864 3221100 000 0 0113556666
Q ss_pred HHHH--HhcccccccCCCEEEEecccccccCCCCCC
Q 020626 280 KILE--EECVAIPWQNGDVLLIDNLAVLHARRSSSR 313 (323)
Q Consensus 280 ~~~~--~~~~~~~w~~GDlli~DN~~~lH~R~~f~g 313 (323)
+..+ +.+..++.-+|++|+++|+..||||.+|+.
T Consensus 246 ~slE~s~~~~~v~vpvG~~lv~NN~fwLHGR~~F~~ 281 (297)
T PF08943_consen 246 ESLENSKNKFSVPVPVGSFLVINNHFWLHGRDKFEP 281 (297)
T ss_dssp HHHHT-TT-EEE---TT-EEEEETTTEEEEE--B--
T ss_pred HHHhcCCCeEEEEcCCCcEEEEeeEEEEeccCCCCC
Confidence 5554 578999999999999999999999999963
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=73.46 E-value=1.2 Score=33.07 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=25.5
Q ss_pred ccCCCEEEEecccccccCCCC-CCCceeeeccc
Q 020626 291 WQNGDVLLIDNLAVLHARRSS-SRPRHILASLC 322 (323)
Q Consensus 291 w~~GDlli~DN~~~lH~R~~f-~g~Rr~l~~~~ 322 (323)
-++|+++++++..++|+.++. .+.||..+.+|
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~l~~~ 98 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYSLTFW 98 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEEEEEE
Confidence 789999999999999999998 66666555443
No 13
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.26 E-value=6.8 Score=32.89 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.5
Q ss_pred ccccccCCCEEEEecccccccCCCCC
Q 020626 287 VAIPWQNGDVLLIDNLAVLHARRSSS 312 (323)
Q Consensus 287 ~~~~w~~GDlli~DN~~~lH~R~~f~ 312 (323)
++=-++||+++++|..+++|+.+++.
T Consensus 175 f~kvl~pGe~~~l~Dh~~~H~~tpi~ 200 (226)
T COG4340 175 FFKVLAPGEAVFLDDHRVLHGVTPIV 200 (226)
T ss_pred eEEeccCCcEEEeccchhccccccee
Confidence 44457899999999999999999984
No 14
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=56.92 E-value=11 Score=32.89 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCCCccccCCCCCCCCC-------CcEEEeecccCCC--CCCCcccccH
Q 020626 106 LDRNIPFHQEMALLPQF-------PSKLFFFCEVEPV--SGGDTPLVLS 145 (323)
Q Consensus 106 ~~~~~~~HtD~sy~~~p-------P~~~~L~c~~~p~--~GGeT~~ad~ 145 (323)
......+|.|.++...+ -+++++..+..|. .||+|.|-+.
T Consensus 89 ~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~ 137 (226)
T PRK05467 89 GGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDT 137 (226)
T ss_pred CCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecC
Confidence 34667899999988533 2466777777765 7999998764
No 15
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=55.96 E-value=6.9 Score=32.07 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.8
Q ss_pred ccccCCCEEEEe
Q 020626 289 IPWQNGDVLLID 300 (323)
Q Consensus 289 ~~w~~GDlli~D 300 (323)
=.||+||||.|+
T Consensus 105 ~~~q~GDIVtw~ 116 (164)
T PF06940_consen 105 EDWQPGDIVTWR 116 (164)
T ss_pred hhcCCCCEEEEe
Confidence 479999999996
No 16
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=54.32 E-value=14 Score=30.61 Aligned_cols=39 Identities=10% Similarity=-0.054 Sum_probs=29.6
Q ss_pred CCCccccCCCCCCCC--CCcEEEeecccCCCCCCCcccccH
Q 020626 107 DRNIPFHQEMALLPQ--FPSKLFFFCEVEPVSGGDTPLVLS 145 (323)
Q Consensus 107 ~~~~~~HtD~sy~~~--pP~~~~L~c~~~p~~GGeT~~ad~ 145 (323)
.....+|.|..+... ...+++++.+..+..||+|.|-+.
T Consensus 93 g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~ 133 (178)
T smart00702 93 GGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGL 133 (178)
T ss_pred CCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCC
Confidence 456779999886542 335777777888889999999874
No 17
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=54.12 E-value=12 Score=31.05 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=28.5
Q ss_pred cccccccCCCEEEEecc--cccccCCCCC-CCceeeecc
Q 020626 286 CVAIPWQNGDVLLIDNL--AVLHARRSSS-RPRHILASL 321 (323)
Q Consensus 286 ~~~~~w~~GDlli~DN~--~~lH~R~~f~-g~Rr~l~~~ 321 (323)
...++=++|++++|.|. +.+|+..+.. |.|..+..+
T Consensus 138 ~~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W 176 (178)
T smart00702 138 CATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGW 176 (178)
T ss_pred ceEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEEEEE
Confidence 34666678999999998 7999999986 777766544
No 18
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=51.61 E-value=13 Score=30.95 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=26.5
Q ss_pred hcccccccCCCEEEEecccccccCCCCCC
Q 020626 285 ECVAIPWQNGDVLLIDNLAVLHARRSSSR 313 (323)
Q Consensus 285 ~~~~~~w~~GDlli~DN~~~lH~R~~f~g 313 (323)
.-+++..++||||+.+=.+.+||-++-+.
T Consensus 126 ~g~~~~~~~GtVl~~~~~~~~Hgvtpv~~ 154 (171)
T PF12851_consen 126 LGVAFAYQPGTVLIFCAKRELHGVTPVES 154 (171)
T ss_pred CCEEEecCCCcEEEEcccceeeecCcccC
Confidence 57888999999999999999999999873
No 19
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=51.45 E-value=8.7 Score=35.72 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=17.8
Q ss_pred ccCCCEEEEecccccccCCC
Q 020626 291 WQNGDVLLIDNLAVLHARRS 310 (323)
Q Consensus 291 w~~GDlli~DN~~~lH~R~~ 310 (323)
+++||++|++|.+|+-+|--
T Consensus 49 l~~gDlLV~NdTkVipARL~ 68 (344)
T TIGR00113 49 FNEGDLLVLNNTKVIPARLF 68 (344)
T ss_pred cCCCCEEEEeCcEEeeeeEE
Confidence 68999999999999988853
No 20
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=46.79 E-value=12 Score=34.83 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.9
Q ss_pred ccCCCEEEEecccccccCCC
Q 020626 291 WQNGDVLLIDNLAVLHARRS 310 (323)
Q Consensus 291 w~~GDlli~DN~~~lH~R~~ 310 (323)
+++||++|++|.+|+-+|--
T Consensus 50 l~~gDlLV~NdTkVipARL~ 69 (342)
T PRK00147 50 LNPGDLLVFNDTRVIPARLF 69 (342)
T ss_pred cCCCCEEEEEcCeeeeeeEE
Confidence 68999999999999988853
No 21
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=45.78 E-value=12 Score=34.82 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=18.2
Q ss_pred ccCCCEEEEecccccccCCC
Q 020626 291 WQNGDVLLIDNLAVLHARRS 310 (323)
Q Consensus 291 w~~GDlli~DN~~~lH~R~~ 310 (323)
+++||++|++|.+|+-+|--
T Consensus 47 L~~GDlLV~NdTkVipARL~ 66 (366)
T PRK01424 47 LKEGDLLVFNNSKVIKAKLN 66 (366)
T ss_pred cCCCCEEEEeccEEeeeEEE
Confidence 68999999999999999864
No 22
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=45.45 E-value=9.2 Score=35.56 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=16.5
Q ss_pred cccCCCEEEEecccccccCCCC
Q 020626 290 PWQNGDVLLIDNLAVLHARRSS 311 (323)
Q Consensus 290 ~w~~GDlli~DN~~~lH~R~~f 311 (323)
-+++||++|++|.+|+.+|--.
T Consensus 48 ~L~~GDlLV~NdTkVipARL~g 69 (341)
T PF02547_consen 48 YLRPGDLLVFNDTKVIPARLFG 69 (341)
T ss_dssp G--TTEEEEEEEEEE-SEEEEE
T ss_pred hhCCCCEEEEeCCEEEeeEEEE
Confidence 4679999999999999988643
No 23
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=45.00 E-value=13 Score=34.22 Aligned_cols=18 Identities=33% Similarity=0.625 Sum_probs=16.1
Q ss_pred ccCCCEEEEecccccccC
Q 020626 291 WQNGDVLLIDNLAVLHAR 308 (323)
Q Consensus 291 w~~GDlli~DN~~~lH~R 308 (323)
++|||+++++|.+|+=+|
T Consensus 50 l~~GD~LVfNdTrVIpAR 67 (348)
T COG0809 50 LNPGDLLVFNDTRVIPAR 67 (348)
T ss_pred cCCCCEEEEecCeeechh
Confidence 689999999999998766
No 24
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=38.71 E-value=20 Score=34.16 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCCcEEEeecccCCCCCCCcccccHHHHHHHhhhhChHHHHHH
Q 020626 121 QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQL 163 (323)
Q Consensus 121 ~pP~~~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe~~~~L 163 (323)
..|+.++|||++||.- ..+-|...|.+.|.+++|.++=+|
T Consensus 452 e~pd~vffc~iepps~---~k~~d~ehale~lqredpslkir~ 491 (753)
T KOG0464|consen 452 EIPDAVFFCCIEPPSL---RKLNDFEHALECLQREDPSLKIRF 491 (753)
T ss_pred cCCCceEEEeccCccc---ccchhHHHHHHHHhccCCceeEEe
Confidence 4789999999999953 556777888888888888776444
No 25
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.59 E-value=25 Score=31.84 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=25.9
Q ss_pred hHHHHHHHHhhccEEEEecCCCCChhHHHHHHHHh
Q 020626 43 QKPFLESLLLKAGAVLLRGFDVKTANDFNDVVEAF 77 (323)
Q Consensus 43 ~~~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~ 77 (323)
..+.+++.+.++|.++++.+-=.+.+.+..+-..|
T Consensus 11 ~~~q~~~~~~~~Gy~Vve~i~d~~~~~la~~r~af 45 (299)
T COG5285 11 SYEQIQDAIDEFGYTVVEDVLDTSADSLAAFRAAF 45 (299)
T ss_pred hHHHHHHHHhhhhhhhHHhHhhhhhhHHHHHHHHh
Confidence 46888999999999999998421356666666666
No 26
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=35.72 E-value=1e+02 Score=23.13 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=26.8
Q ss_pred HhhHHHHHHHHhhccEEEEecCCCCChh---HHHHHHHHh
Q 020626 41 RTQKPFLESLLLKAGAVLLRGFDVKTAN---DFNDVVEAF 77 (323)
Q Consensus 41 ~~~~~~l~~~l~~~Gvvl~rg~~~~~~e---~~~~~~~~~ 77 (323)
.+..+.|.+++.+.|+..+.+..+ +.+ +..+.++.|
T Consensus 14 ~~~~~~l~~A~~~~GFf~l~nhGi-~~~l~~~~~~~~~~f 52 (116)
T PF14226_consen 14 EEVAEQLRDACEEWGFFYLVNHGI-PQELIDRVFAAAREF 52 (116)
T ss_dssp HHHHHHHHHHHHHTSEEEEESSSS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEecccc-cchhhHHHHHHHHHH
Confidence 446889999999999999999998 544 333444444
No 27
>PHA02813 hypothetical protein; Provisional
Probab=34.97 E-value=32 Score=32.00 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=29.6
Q ss_pred CCCCccccCCCCCCCC--CCcEEEeecccCCCCCCCcccccH
Q 020626 106 LDRNIPFHQEMALLPQ--FPSKLFFFCEVEPVSGGDTPLVLS 145 (323)
Q Consensus 106 ~~~~~~~HtD~sy~~~--pP~~~~L~c~~~p~~GGeT~~ad~ 145 (323)
....+.+|.|.+|... -.-+.+|.=+..+..||+|.|...
T Consensus 103 kGq~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~ 144 (354)
T PHA02813 103 KGDFFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIK 144 (354)
T ss_pred CCcccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcC
Confidence 4556789999988542 234556666788899999999876
No 28
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=31.95 E-value=24 Score=14.83 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=5.6
Q ss_pred ccccccCC
Q 020626 287 VAIPWQNG 294 (323)
Q Consensus 287 ~~~~w~~G 294 (323)
+++.|.||
T Consensus 3 wS~~w~PG 10 (10)
T PF00446_consen 3 WSHGWKPG 10 (10)
T ss_pred cccccCCC
Confidence 56777776
No 29
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=29.36 E-value=33 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=19.1
Q ss_pred ccccccCCCEEEEecccccccCCCC-CCCceeee
Q 020626 287 VAIPWQNGDVLLIDNLAVLHARRSS-SRPRHILA 319 (323)
Q Consensus 287 ~~~~w~~GDlli~DN~~~lH~R~~f-~g~Rr~l~ 319 (323)
-.+.|++|.++++|+. ..|...-. +..|.+|.
T Consensus 124 ~~~~w~~G~~~~fD~s-~~H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 124 ETRHWREGECWVFDDS-FEHEVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEB--CTEEEEE-TT-S-EEEEESSSS-EEEEE
T ss_pred eEEEeccCcEEEEeCC-EEEEEEeCCCCCEEEEE
Confidence 3579999999999998 67765433 45666554
No 30
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=29.26 E-value=50 Score=29.72 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred ccccccCCCEEEEecccccccCCCCCC--Cceeee
Q 020626 287 VAIPWQNGDVLLIDNLAVLHARRSSSR--PRHILA 319 (323)
Q Consensus 287 ~~~~w~~GDlli~DN~~~lH~R~~f~g--~Rr~l~ 319 (323)
+.+..++||++|+|-+ ++||..+-.. .|+.+.
T Consensus 211 v~~~~~aGDvl~f~~~-~~H~S~~N~s~~~R~~l~ 244 (277)
T TIGR02408 211 STFTGKAGSAVWFDCN-TMHGSGSNITPWPRSNVF 244 (277)
T ss_pred eeeccCCceEEEEccc-cccCCCCCCCCCcceeEE
No 31
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=28.36 E-value=29 Score=29.57 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=18.6
Q ss_pred cccccccCCCEEEEecccccccCCCC
Q 020626 286 CVAIPWQNGDVLLIDNLAVLHARRSS 311 (323)
Q Consensus 286 ~~~~~w~~GDlli~DN~~~lH~R~~f 311 (323)
....-.++||.+++|-.+++|+-++-
T Consensus 152 ~~~~l~~p~d~l~~~D~~~~H~vtpI 177 (195)
T PF10014_consen 152 FFFTLLEPGDTLLVDDRRVWHYVTPI 177 (195)
T ss_dssp EEE---STTEEEEEETTTEEEEE--E
T ss_pred eEEEecCCCCEEEEeCCcceECCCce
Confidence 34556789999999999999999885
No 32
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=27.92 E-value=35 Score=25.42 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=11.2
Q ss_pred cccccCCCEEEEec
Q 020626 288 AIPWQNGDVLLIDN 301 (323)
Q Consensus 288 ~~~w~~GDlli~DN 301 (323)
.=..+||||+++.+
T Consensus 49 ~~~~~pGDlif~~~ 62 (105)
T PF00877_consen 49 ISELQPGDLIFFKG 62 (105)
T ss_dssp GGG-TTTEEEEEEG
T ss_pred hhcCCcccEEEEeC
Confidence 34789999999999
No 33
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=24.74 E-value=49 Score=24.56 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=20.8
Q ss_pred hcccccccCCCEEEEecccccccCCCCCC-Cceeeec
Q 020626 285 ECVAIPWQNGDVLLIDNLAVLHARRSSSR-PRHILAS 320 (323)
Q Consensus 285 ~~~~~~w~~GDlli~DN~~~lH~R~~f~g-~Rr~l~~ 320 (323)
..+.++=++|||+|+- -.+.|+-.++.+ ..|+-+|
T Consensus 64 ~~~~~~p~~G~lvlFP-s~l~H~v~p~~~~~~Risis 99 (101)
T PF13759_consen 64 PYYIVEPEEGDLVLFP-SWLWHGVPPNNSDEERISIS 99 (101)
T ss_dssp SEEEE---TTEEEEEE-TTSEEEE----SSS-EEEEE
T ss_pred ceEEeCCCCCEEEEeC-CCCEEeccCcCCCCCEEEEE
Confidence 4677888999999999 558999999865 4666554
No 34
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=24.35 E-value=47 Score=28.23 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=10.1
Q ss_pred cccCCCEEEEec
Q 020626 290 PWQNGDVLLIDN 301 (323)
Q Consensus 290 ~w~~GDlli~DN 301 (323)
..+|||+|+|++
T Consensus 128 ~lqpGDLVfF~~ 139 (190)
T PRK10838 128 KLRTGDLVLFRA 139 (190)
T ss_pred CCCCCcEEEECC
Confidence 579999999863
No 35
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=23.72 E-value=56 Score=25.87 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=10.2
Q ss_pred cccCCCEEEEec
Q 020626 290 PWQNGDVLLIDN 301 (323)
Q Consensus 290 ~w~~GDlli~DN 301 (323)
..||||||+|.+
T Consensus 76 ~~qpGDlvff~~ 87 (134)
T TIGR02219 76 AAQPGDVLVFRW 87 (134)
T ss_pred cCCCCCEEEEee
Confidence 579999999973
No 36
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=23.72 E-value=24 Score=24.99 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=25.2
Q ss_pred EEeecccCCCCCCCcccccHHHHHHHhhhhChH
Q 020626 126 LFFFCEVEPVSGGDTPLVLSHIVYERMKESYPE 158 (323)
Q Consensus 126 ~~L~c~~~p~~GGeT~~ad~~~a~~~L~~~~pe 158 (323)
++++|-++|..|=+..+-+...+++.|.+..|.
T Consensus 9 lF~~~FR~a~~~Ee~e~lsa~~If~~L~k~~~~ 41 (73)
T PF12990_consen 9 LFHCCFRPAEEGEEGEWLSAAEIFERLQKKSPA 41 (73)
T ss_pred HHHHHccCCCCCccceeecHHHHHHHHHHhCcc
Confidence 455677888887777788888888888865554
No 37
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=23.70 E-value=74 Score=30.25 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=28.4
Q ss_pred CCCCccccCCCCCCCC--CCcEEEeecccCCCCCCCccccc
Q 020626 106 LDRNIPFHQEMALLPQ--FPSKLFFFCEVEPVSGGDTPLVL 144 (323)
Q Consensus 106 ~~~~~~~HtD~sy~~~--pP~~~~L~c~~~p~~GGeT~~ad 144 (323)
....+.+|.|.+|... ---+.+|.=+..+..||+|.|..
T Consensus 112 kGq~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~ 152 (418)
T PHA02869 112 KGDYFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYI 152 (418)
T ss_pred CCCcccccccCceecCCCEEEEEEEEEEeccCCCCceEEEe
Confidence 3556779999987643 22344555567889999999987
No 38
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=23.30 E-value=2.2e+02 Score=22.06 Aligned_cols=26 Identities=12% Similarity=-0.037 Sum_probs=22.0
Q ss_pred hhHHHHHHHHhhccEEEEecCCCCChh
Q 020626 42 TQKPFLESLLLKAGAVLLRGFDVKTAN 68 (323)
Q Consensus 42 ~~~~~l~~~l~~~Gvvl~rg~~~~~~e 68 (323)
+..++|+++..++|+..+.|-.+ +.+
T Consensus 55 ~~~~~L~~A~~~~GFf~l~nhGi-~~e 80 (120)
T PLN03176 55 EICNKIVEACEEWGVFQIVDHGV-DAK 80 (120)
T ss_pred HHHHHHHHHHHHCCEEEEECCCC-CHH
Confidence 35789999999999999999988 443
No 39
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.21 E-value=2.6e+02 Score=21.35 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=19.6
Q ss_pred HHHHHHHhhccEEEEecCCCCChhHHHHHHHHh
Q 020626 45 PFLESLLLKAGAVLLRGFDVKTANDFNDVVEAF 77 (323)
Q Consensus 45 ~~l~~~l~~~Gvvl~rg~~~~~~e~~~~~~~~~ 77 (323)
+-++++-...++++|||++-.+..+..+....+
T Consensus 15 ~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l 47 (113)
T PF09673_consen 15 NLLKQAERAGVVVVFRGFPDGSFKPTAKAIQEL 47 (113)
T ss_pred HHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 333344444899999999853444444444444
No 40
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=20.84 E-value=72 Score=27.92 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=26.0
Q ss_pred ccccccCCCEEEEecccccccCCCCC-CCceeeec
Q 020626 287 VAIPWQNGDVLLIDNLAVLHARRSSS-RPRHILAS 320 (323)
Q Consensus 287 ~~~~w~~GDlli~DN~~~lH~R~~f~-g~Rr~l~~ 320 (323)
..++.++||+|++.+. .+|..++-+ |.|..++.
T Consensus 141 ~~Vkp~aG~~vlfps~-~lH~v~pVt~G~R~~~~~ 174 (226)
T PRK05467 141 HRVKLPAGDLVLYPST-SLHRVTPVTRGVRVASFF 174 (226)
T ss_pred EEEecCCCeEEEECCC-CceeeeeccCccEEEEEe
Confidence 4678889999999985 789999975 66666554
No 41
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=20.50 E-value=1.9e+02 Score=21.08 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=27.9
Q ss_pred ChhhHHHHHHhhHHHHHHHHhhccEEEEecCCC
Q 020626 32 NLSFLTETIRTQKPFLESLLLKAGAVLLRGFDV 64 (323)
Q Consensus 32 ~~~~l~~~~~~~~~~l~~~l~~~Gvvl~rg~~~ 64 (323)
+..+....++...+.|.++|.+.+-|.|+||..
T Consensus 17 s~~~~~~~v~~~~~~i~~~L~~~~~v~l~gfG~ 49 (90)
T PRK10664 17 SKAAAGRALDAIIASVTESLKEGDDVALVGFGT 49 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEECCcEE
Confidence 455677778888999999999999999999963
Done!