Query 020628
Match_columns 323
No_of_seqs 175 out of 1716
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xb2_B EF-TS, elongation facto 100.0 1.2E-61 4.1E-66 458.7 24.3 213 77-299 4-231 (291)
2 1aip_C EF-TS, elongation facto 100.0 6.5E-55 2.2E-59 389.7 18.6 159 75-236 1-194 (196)
3 3avx_A Elongation factor TS, e 100.0 4.1E-56 1.4E-60 481.0 10.2 199 79-318 7-205 (1289)
4 1tfe_A Elongation factor TS; 1 99.9 1.3E-27 4.4E-32 205.4 9.9 107 129-238 1-142 (145)
5 2cp9_A EF-TS, EF-TSMT, elongat 99.8 8.3E-20 2.9E-24 135.8 5.3 55 78-132 10-64 (64)
6 1tfe_A Elongation factor TS; 1 99.7 2.7E-17 9.3E-22 141.2 6.4 76 238-318 2-78 (145)
7 1aip_C EF-TS, elongation facto 99.7 1.2E-16 4.2E-21 142.7 8.2 77 237-318 55-132 (196)
8 1xb2_B EF-TS, elongation facto 99.5 4E-14 1.4E-18 133.8 11.3 119 106-238 140-275 (291)
9 3avx_A Elongation factor TS, e 99.3 9.5E-12 3.2E-16 135.8 11.0 104 115-237 125-262 (1289)
10 1z96_A DNA-damage, UBA-domain 97.5 0.00012 4.2E-09 48.3 5.1 34 79-113 6-39 (40)
11 1wj7_A Hypothetical protein (R 97.5 0.00011 3.8E-09 59.2 5.7 39 79-117 41-79 (104)
12 2g3q_A Protein YBL047C; endocy 97.1 0.00057 2E-08 46.1 4.3 36 79-115 6-41 (43)
13 2knz_A Ubiquilin-4; cytoplasm, 96.8 0.0015 5.1E-08 46.2 4.7 39 78-117 12-51 (53)
14 2jy5_A Ubiquilin-1; UBA, alter 96.8 0.0017 5.8E-08 45.8 4.8 36 78-114 13-49 (52)
15 2dah_A Ubiquilin-3; UBA domain 96.7 0.0027 9.3E-08 45.2 5.5 39 79-118 11-50 (54)
16 2bwb_A Ubiquitin-like protein 96.6 0.0033 1.1E-07 43.3 4.9 35 79-114 9-44 (46)
17 2dak_A Ubiquitin carboxyl-term 96.6 0.0027 9.1E-08 46.4 4.7 37 79-116 11-47 (63)
18 2dna_A Unnamed protein product 96.5 0.0046 1.6E-07 46.0 5.8 39 79-117 21-59 (67)
19 1ify_A HHR23A, UV excision rep 96.5 0.003 1E-07 43.9 4.4 36 79-115 10-45 (49)
20 1wji_A Tudor domain containing 96.4 0.0035 1.2E-07 46.0 4.7 38 79-117 11-48 (63)
21 1wr1_B Ubiquitin-like protein 96.4 0.0045 1.5E-07 44.7 5.1 36 79-115 19-55 (58)
22 2cpw_A CBL-interacting protein 96.4 0.0024 8.3E-08 46.9 3.7 37 79-116 21-58 (64)
23 1vej_A Riken cDNA 4931431F19; 96.3 0.0062 2.1E-07 46.1 5.4 36 79-115 31-67 (74)
24 1tr8_A Conserved protein (MTH1 96.2 0.0046 1.6E-07 49.6 4.5 36 78-113 66-101 (102)
25 2dag_A Ubiquitin carboxyl-term 96.1 0.0082 2.8E-07 45.3 5.0 38 79-117 11-49 (74)
26 2dai_A Ubadc1, ubiquitin assoc 96.0 0.01 3.5E-07 45.8 5.4 38 79-117 31-68 (83)
27 1vg5_A RSGI RUH-014, rhomboid 95.9 0.0083 2.8E-07 45.3 4.3 36 79-115 31-66 (73)
28 1wiv_A UBP14, ubiquitin-specif 95.8 0.015 5.1E-07 43.8 5.4 37 79-116 31-67 (73)
29 2ekk_A UBA domain from E3 ubiq 95.7 0.02 6.9E-07 39.1 5.3 35 79-115 11-45 (47)
30 1whc_A RSGI RUH-027, UBA/UBX 3 95.6 0.011 3.8E-07 43.3 4.2 38 79-117 11-49 (64)
31 1oai_A Nuclear RNA export fact 95.5 0.032 1.1E-06 40.3 6.1 39 77-115 7-45 (59)
32 2crn_A Ubash3A protein; compac 95.4 0.019 6.4E-07 42.1 4.6 37 80-117 12-49 (64)
33 2dkl_A Trinucleotide repeat co 95.4 0.024 8.3E-07 43.9 5.4 39 78-117 22-60 (85)
34 1veg_A NEDD8 ultimate buster-1 95.2 0.029 9.8E-07 43.4 5.3 37 79-116 31-67 (83)
35 2jp7_A MRNA export factor MEX6 95.2 0.035 1.2E-06 39.9 5.3 40 77-116 6-45 (57)
36 1wgn_A UBAP1, ubiquitin associ 95.0 0.014 4.8E-07 42.6 2.9 36 80-116 22-57 (63)
37 2cwb_A Chimera of immunoglobul 95.0 0.027 9.2E-07 45.6 4.8 39 79-117 68-106 (108)
38 3e21_A HFAF1, FAS-associated f 95.0 0.037 1.3E-06 37.9 4.7 34 78-111 6-40 (45)
39 4ae4_A Ubiquitin-associated pr 94.9 0.022 7.4E-07 46.8 4.2 39 77-116 76-114 (118)
40 1vek_A UBP14, ubiquitin-specif 94.9 0.039 1.3E-06 42.6 5.4 38 79-117 31-69 (84)
41 2lbc_A Ubiquitin carboxyl-term 94.8 0.032 1.1E-06 45.8 5.0 37 79-116 80-116 (126)
42 2lva_A Ubiquitin carboxyl-term 93.5 0.0067 2.3E-07 50.1 0.0 40 80-119 21-61 (129)
43 1vdl_A Ubiquitin carboxyl-term 93.7 0.097 3.3E-06 39.5 5.0 39 79-117 26-65 (80)
44 1dv0_A DNA repair protein HHR2 93.7 0.023 7.7E-07 39.1 1.4 36 79-115 6-41 (47)
45 2lbc_A Ubiquitin carboxyl-term 92.9 0.086 3E-06 43.2 4.0 39 79-118 5-44 (126)
46 1v92_A NSFL1 cofactor P47; 3-h 92.9 0.2 6.7E-06 33.6 5.2 37 79-115 7-43 (46)
47 4ae4_A Ubiquitin-associated pr 92.9 0.075 2.5E-06 43.5 3.6 39 78-117 9-47 (118)
48 2dam_A ETEA protein; KIAA0887, 91.9 0.21 7E-06 36.8 4.6 38 78-115 19-57 (67)
49 2cp8_A NEXT to BRCA1 gene 1 pr 91.7 0.31 1.1E-05 34.6 5.1 41 78-118 10-50 (54)
50 2dal_A Protein KIAA0794; FAS a 91.1 0.46 1.6E-05 34.3 5.7 40 78-117 16-55 (62)
51 1otr_A Protein CUE2; protein-p 89.3 0.66 2.2E-05 32.2 5.0 39 79-117 6-45 (49)
52 2ooa_A E3 ubiquitin-protein li 88.4 0.58 2E-05 32.9 4.2 37 79-116 13-49 (52)
53 2dzl_A Protein FAM100B; UBA-li 88.3 0.8 2.7E-05 33.6 5.2 37 79-115 19-55 (66)
54 2d9s_A CBL E3 ubiquitin protei 88.1 0.61 2.1E-05 32.9 4.2 37 80-117 12-48 (53)
55 1wgl_A TOLL-interacting protei 87.7 1.1 3.7E-05 32.2 5.4 38 79-116 11-49 (59)
56 2oo9_A E3 ubiquitin-protein li 85.6 0.97 3.3E-05 30.9 3.9 36 81-117 8-43 (46)
57 1ctf_A Ribosomal protein L7/L1 82.9 1.3 4.6E-05 33.3 4.1 42 77-118 19-69 (74)
58 2juj_A E3 ubiquitin-protein li 82.0 1.3 4.4E-05 31.4 3.5 38 79-117 9-46 (56)
59 3k9o_A Ubiquitin-conjugating e 79.6 2.8 9.7E-05 36.7 5.8 37 78-115 164-200 (201)
60 1jkg_B TAP; NTF2-like domain, 79.3 0.38 1.3E-05 43.9 0.0 38 78-115 199-236 (250)
61 3k6g_A Telomeric repeat-bindin 77.8 5.1 0.00017 32.0 6.0 38 78-115 14-51 (111)
62 1oqy_A HHR23A, UV excision rep 77.2 0.9 3.1E-05 43.9 1.9 35 79-114 170-204 (368)
63 1dd3_A 50S ribosomal protein L 76.1 3.2 0.00011 34.4 4.6 28 77-104 70-97 (128)
64 2dhy_A CUE domain-containing p 75.6 4.8 0.00016 29.6 5.0 38 79-116 20-58 (67)
65 2cos_A Serine/threonine protei 74.8 2 6.9E-05 30.3 2.7 38 80-118 12-50 (54)
66 2zjq_5 50S ribosomal protein L 66.9 6.2 0.00021 32.3 4.4 25 78-102 69-93 (122)
67 2j01_L 50S ribosomal protein L 66.5 6.3 0.00021 32.5 4.3 25 78-102 72-96 (125)
68 3e46_A Ubiquitin-conjugating e 63.3 8.7 0.0003 35.1 5.1 37 78-115 216-252 (253)
69 1oqy_A HHR23A, UV excision rep 56.2 4.6 0.00016 38.9 2.1 38 78-116 326-363 (368)
70 2qsf_X RAD23, UV excision repa 54.8 14 0.00047 32.0 4.6 38 78-116 131-168 (171)
71 2di0_A Activating signal coint 54.6 47 0.0016 24.5 6.9 54 75-128 11-65 (71)
72 2ftc_E L12MT, MRP-L12, 39S rib 52.2 16 0.00055 30.4 4.5 27 77-103 81-108 (137)
73 3bq3_A Defective in cullin ned 50.6 20 0.00069 33.0 5.3 41 78-118 16-56 (270)
74 2jml_A DNA binding domain/tran 50.3 9.6 0.00033 28.0 2.6 38 63-103 41-78 (81)
75 3hh0_A Transcriptional regulat 50.3 13 0.00044 30.7 3.7 51 62-116 38-88 (146)
76 3ihp_A Ubiquitin carboxyl-term 48.6 12 0.0004 39.9 3.8 36 80-116 723-758 (854)
77 4dbg_B Ring finger protein 31; 44.6 19 0.00066 30.8 3.8 26 90-115 115-140 (162)
78 3gp4_A Transcriptional regulat 43.8 32 0.0011 28.2 5.1 51 62-116 36-89 (142)
79 3sgf_J 50S ribosomal protein L 41.6 5.5 0.00019 32.6 0.0 26 78-103 67-92 (121)
80 3gpv_A Transcriptional regulat 40.4 30 0.001 28.5 4.4 51 62-116 50-103 (148)
81 1q02_A Sequestosome 1; helical 39.2 11 0.00037 26.4 1.2 37 79-115 9-49 (52)
82 3hdp_A Glyoxalase-I; glutathio 34.6 21 0.00071 27.0 2.4 46 104-149 86-131 (133)
83 2rqp_A Heterochromatin protein 31.3 1.1E+02 0.0037 23.0 5.9 27 78-104 17-43 (88)
84 1nri_A Hypothetical protein HI 30.8 13 0.00043 34.3 0.5 34 81-114 248-281 (306)
85 3huh_A Virulence protein STM31 30.0 42 0.0014 26.1 3.6 53 102-154 93-146 (152)
86 4dbg_B Ring finger protein 31; 25.8 80 0.0027 26.9 4.6 40 78-117 58-102 (162)
87 2dae_A KIAA0733 protein; mitog 24.2 1.1E+02 0.0038 22.7 4.5 39 78-116 11-50 (75)
88 2e2a_A Protein (enzyme IIA); h 22.7 54 0.0018 25.9 2.8 35 82-116 11-46 (105)
89 1wcr_A PTS system, N, N'-diace 22.5 55 0.0019 25.8 2.8 31 86-116 13-44 (103)
90 1r8e_A Multidrug-efflux transp 21.6 85 0.0029 27.6 4.3 46 62-114 40-85 (278)
91 1q06_A Transcriptional regulat 21.0 1.2E+02 0.0041 24.2 4.8 51 62-116 34-87 (135)
No 1
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=100.00 E-value=1.2e-61 Score=458.68 Aligned_cols=213 Identities=28% Similarity=0.353 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH----hchhhhcccccccccCCceEEEecCCeEEEEEEecCC
Q 020628 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK----RGKVLASKKSSRTATEGLLALAQNESKAAVIELNCET 152 (323)
Q Consensus 77 ~~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk----~G~a~A~Kr~~R~a~EGlV~~yv~~~~avlVElncET 152 (323)
++++||+||++||+|||||||||+|+|||+|+|++|||+ +|+++|.||++|.++||+|++|++++.||||||||||
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcET 83 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCET 83 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEeccc
Confidence 467999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred chhhhcHHHHHHHHHHHHHHHHhcCCCCCCCC--CCCC-CHHHHhcccccCCCCCCCCccc--HHHHHHHHHHhhccceE
Q 020628 153 DFVSRNEIFQYLALALAKQALVAENVSQPVSG--LFPV-GPEYLEGLKLNLDHPKIGGETT--VQNAITEVAAIMGENVK 227 (323)
Q Consensus 153 DFVArn~~F~~Lak~IA~~iaa~~~~~p~~~~--~~~v-~~e~l~~~~~lldq~~id~~~T--V~d~i~e~ia~~GEnI~ 227 (323)
||||||+.|++|+++||+++++..+..+...+ ..++ +.+.+...+ ++++.| |+|.+.++++++||||.
T Consensus 84 DFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~-------~~~~~t~tv~d~i~~~ia~iGEni~ 156 (291)
T 1xb2_B 84 DFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELP-------AGPEREGSLKDQLALAIGKLGENMI 156 (291)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSB-------CCSSSCSBHHHHHHHHHHHHCSCEE
T ss_pred ceeeCCHHHHHHHHHHHHHHHhcCCcccccccccccccCCHHHHhhcc-------cccCcchhHHHHHHHHHHHhhhhHH
Confidence 99999999999999999999988643211111 1111 566665432 223456 99999999999999999
Q ss_pred EeEEEEeeecCCCeeEEEecCCCC------CCCCcEEEEEEEeecCCCCCCchhHHHHHHHHHHHhhcCCcccCcCCC
Q 020628 228 LRRGFLLSASSPGVVSTYLHTSPQ------SGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELV 299 (323)
Q Consensus 228 L~Rf~r~~~~~~~~v~~Y~H~~~~------~~~Grig~LV~l~~~~~~~~~~~~~~la~~IAmHIvA~~P~~ls~~~V 299 (323)
|+||.++..++++.|++|+|+++. +++||||+||.|++.++ .+.+.+++++||||||||+|.||++++|
T Consensus 157 lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~---~~~l~~~ak~iAmHIaA~~P~~l~~~~v 231 (291)
T 1xb2_B 157 LKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL---KANLADLGRRLGQHVVGMAPLSVGSLDD 231 (291)
T ss_dssp EEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC---GGGCHHHHHHHHHHHHHHCCSBCCCTTS
T ss_pred HHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCc---cchHHHHHHHHHHHHHhcCCcccCHHHh
Confidence 999999986667899999998843 57899999999997542 1224589999999999999999999987
No 2
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=100.00 E-value=6.5e-55 Score=389.73 Aligned_cols=159 Identities=40% Similarity=0.550 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhchhhhcccccccccCCceEEEe--cCCeEEEEEEecCC
Q 020628 75 TEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQ--NESKAAVIELNCET 152 (323)
Q Consensus 75 ~~~~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G~a~A~Kr~~R~a~EGlV~~yv--~~~~avlVElncET 152 (323)
|+++++||+||++||+|||||||||+|+|||+|+|++|||++|+++|.||++|.++||+|++|+ +++.||||||||||
T Consensus 1 m~~a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG~akAaKka~R~aaEGlV~~~i~~~~~~gvlvEvNcET 80 (196)
T 1aip_C 1 MSQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCET 80 (196)
T ss_dssp -CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSS
T ss_pred CChHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCchhhHhccccccCCeEEEEEecCCCEEEEEEEecCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999 47889999999999
Q ss_pred chhhhcHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhccc--------------------------------ccC
Q 020628 153 DFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLK--------------------------------LNL 200 (323)
Q Consensus 153 DFVArn~~F~~Lak~IA~~iaa~~~~~p~~~~~~~v~~e~l~~~~--------------------------------~ll 200 (323)
||||||+.|++|+++|||||++++ |.|++.++||++.+++++ ||+
T Consensus 81 DFVArn~~F~~lakdiAMhiAA~~---P~~l~~~~vp~~~ve~E~~i~~~~~~~~gKPe~i~eKiveGrl~Kf~~e~~Ll 157 (196)
T 1aip_C 81 DFVARNELFQNLAKDLAMHIAMMN---PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLL 157 (196)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHC---CSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHBTT
T ss_pred ccccCCHHHHHHHHHHHHHHHHhC---CccCChhhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhHhhhh
Confidence 999999999999999999999997 889999999999876553 899
Q ss_pred CCCCC-CCcccHHHHHHHHHHhhccceEEeEEEEeee
Q 020628 201 DHPKI-GGETTVQNAITEVAAIMGENVKLRRGFLLSA 236 (323)
Q Consensus 201 dq~~i-d~~~TV~d~i~e~ia~~GEnI~L~Rf~r~~~ 236 (323)
+|+|+ |++.||++.+.+.++++||||+|+||.||++
T Consensus 158 ~Q~fvkd~~~tV~~~l~~~~~~~G~~i~v~~F~R~~v 194 (196)
T 1aip_C 158 EQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFEL 194 (196)
T ss_dssp TSBCTTCTTSBHHHHHHHHHHHHCSCCEEEEEEEEET
T ss_pred cCCccCCCCCCHHHHHHHHHHhcCCCcEEEEEEEEEe
Confidence 99999 8899999999999999999999999999986
No 3
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=4.1e-56 Score=480.96 Aligned_cols=199 Identities=33% Similarity=0.503 Sum_probs=180.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhchhhhcccccccccCCceEEEecCCeEEEEEEecCCchhhhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRN 158 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G~a~A~Kr~~R~a~EGlV~~yv~~~~avlVElncETDFVArn 158 (323)
++||+||++||+|||||||||+|+|||+|+|++||||+|+++|.||++|.++||+|+++++++.||||||||||||||||
T Consensus 7 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkkG~akAaKka~R~aaEGlv~~~i~~~~g~lvEvNcETDFVAkn 86 (1289)
T 3avx_A 7 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKD 86 (1289)
T ss_dssp SCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTTHHHHHHHHTTSCCCEEEEEEEECSSEEEEEEEEESCHHHHTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHhCcchhhHhcCccccCceEEEEEcCCEEEEEEEEccccceeCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcccccCCCCCCCCcccHHHHHHHHHHhhccceEEeEEEEeeecC
Q 020628 159 EIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASS 238 (323)
Q Consensus 159 ~~F~~Lak~IA~~iaa~~~~~p~~~~~~~v~~e~l~~~~~lldq~~id~~~TV~d~i~e~ia~~GEnI~L~Rf~r~~~~~ 238 (323)
+.|++|+++||.++++..+. +.|.+.. .|+|.+.++++++||||+|+||.+++
T Consensus 87 ~~F~~l~~~ia~~~~~~~~~----------~~e~l~~--------------~v~~~~~~~ia~iGEni~lrR~~~~~--- 139 (1289)
T 3avx_A 87 AGFQAFADKVLDAAVAGKIT----------DVEVLKA--------------QFEEERVALVAKIGENINIRRVAALE--- 139 (1289)
T ss_dssp HHHHHHHHHHHHHHHTTTCC----------CHHHHHH--------------TTSTTTTTTTTTTCSCCEEEEEEEEE---
T ss_pred HHHHHHHHHHHHHHHhcCCC----------CHHHHHH--------------HHHHHHHHHHhhhccceEEeEEEEEE---
Confidence 99999999999998876521 3355542 15566777999999999999999997
Q ss_pred CCeeEEEecCCCCCCCCcEEEEEEEeecCCCCCCchhHHHHHHHHHHHhhcCCcccCcCCCCHHHHHHHHHHHHHhhcCc
Q 020628 239 PGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQDMHP 318 (323)
Q Consensus 239 ~~~v~~Y~H~~~~~~~Grig~LV~l~~~~~~~~~~~~~~la~~IAmHIvA~~P~~ls~~~Vp~~vle~Er~i~~~qa~~~ 318 (323)
++.+++|+|+ ||||+||.+++.+ +++||+|||||||++|.||++++||++++++||+|+++|++.+
T Consensus 140 ~~~v~~Y~Hg------~kigvlV~~~~~~--------~~~ak~iAMhIaA~~P~~l~~~~vp~~~ve~E~~i~~~~a~~~ 205 (1289)
T 3avx_A 140 GDVLGSYQHG------ARIGVLVAAKGAD--------EELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQS 205 (1289)
T ss_dssp CSEEEEEEET------TTEEEEEEEESCC--------HHHHHHHHHHHHHHCCSBSSTTTSCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecC------CeEEEEEEecCCc--------HHHHHHHHHHHHhcCCeecchhhCCHHHHHHHHHHHHHHHHhc
Confidence 4899999994 6999999998632 3799999999999999999999999999999999999998753
No 4
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=99.94 E-value=1.3e-27 Score=205.42 Aligned_cols=107 Identities=32% Similarity=0.459 Sum_probs=98.4
Q ss_pred ccCCceEEEec--CCeEEEEEEecCCchhhhcHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhccc---------
Q 020628 129 ATEGLLALAQN--ESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLK--------- 197 (323)
Q Consensus 129 a~EGlV~~yv~--~~~avlVElncETDFVArn~~F~~Lak~IA~~iaa~~~~~p~~~~~~~v~~e~l~~~~--------- 197 (323)
|+||+|++|+| |++||||||||||||||||+.|++|+++||||+++++ |.+++.++||++.+++++
T Consensus 1 a~EG~v~~yiH~~gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~---p~~v~~e~vp~~~~e~E~~i~~~~~~~ 77 (145)
T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMN---PRYVSAEEIPAEELEKERQIYIQAALN 77 (145)
T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHC---CSBSSGGGSCHHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcC---CcccchhhCCHHHHHHHHHHHHHHHHh
Confidence 47999999998 6789999999999999999999999999999999997 778888999999887532
Q ss_pred -----------------------ccCCCCCC-CCcccHHHHHHHHHHhhccceEEeEEEEeeecC
Q 020628 198 -----------------------LNLDHPKI-GGETTVQNAITEVAAIMGENVKLRRGFLLSASS 238 (323)
Q Consensus 198 -----------------------~lldq~~i-d~~~TV~d~i~e~ia~~GEnI~L~Rf~r~~~~~ 238 (323)
||++|+|+ |++.||+|.+.+.++++||||+|+||.||++.+
T Consensus 78 ~gKPe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vGe 142 (145)
T 1tfe_A 78 EGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 142 (145)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeCC
Confidence 89999999 778999999999999999999999999999754
No 5
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=99.78 E-value=8.3e-20 Score=135.78 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhchhhhcccccccccCC
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEG 132 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G~a~A~Kr~~R~a~EG 132 (323)
+++||+||++||+||||||+||+++|||+++|++|||++|.+.+.+++.+.++.|
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~~~a~kKA~k~~~~~ 64 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHhccCCCC
Confidence 4699999999999999999999999999999999999999999999999988654
No 6
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=99.68 E-value=2.7e-17 Score=141.16 Aligned_cols=76 Identities=26% Similarity=0.511 Sum_probs=67.3
Q ss_pred CCCeeEEEecCCCCCCCCcEEEEEEEeecCCCC-CCchhHHHHHHHHHHHhhcCCcccCcCCCCHHHHHHHHHHHHHhhc
Q 020628 238 SPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSS-SFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQDM 316 (323)
Q Consensus 238 ~~~~v~~Y~H~~~~~~~Grig~LV~l~~~~~~~-~~~~~~~la~~IAmHIvA~~P~~ls~~~Vp~~vle~Er~i~~~qa~ 316 (323)
.+|.+++|+|++ |++|+||++++++++. ..+.+++|+++|||||+|++|.|+++++||++++++||+|+++|++
T Consensus 2 ~EG~v~~yiH~~-----gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~~~~~ 76 (145)
T 1tfe_A 2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL 76 (145)
T ss_dssp CEEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecC-----CCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHHHHHH
Confidence 368899999987 9999999999987642 2455679999999999999999999999999999999999999987
Q ss_pred Cc
Q 020628 317 HP 318 (323)
Q Consensus 317 ~~ 318 (323)
.+
T Consensus 77 ~~ 78 (145)
T 1tfe_A 77 NE 78 (145)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 7
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=99.66 E-value=1.2e-16 Score=142.67 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=70.3
Q ss_pred cCCCeeEEEecCCCCCCCCcEEEEEEEeecCCCC-CCchhHHHHHHHHHHHhhcCCcccCcCCCCHHHHHHHHHHHHHhh
Q 020628 237 SSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSS-SFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQD 315 (323)
Q Consensus 237 ~~~~~v~~Y~H~~~~~~~Grig~LV~l~~~~~~~-~~~~~~~la~~IAmHIvA~~P~~ls~~~Vp~~vle~Er~i~~~qa 315 (323)
..+|.|++|+|.. |++|+||++++++++. ..+.+..|+++|||||||++|.||++++||++++++||+|+++|+
T Consensus 55 aaEGlV~~~i~~~-----~~~gvlvEvNcETDFVArn~~F~~lakdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~~~~ 129 (196)
T 1aip_C 55 AREGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAA 129 (196)
T ss_dssp CCCCEEEEEECTT-----SSEEEEEEEECSSHHHHTSHHHHHHHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEEecC-----CCEEEEEEEecCCccccCCHHHHHHHHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHHHHH
Confidence 4579999999986 9999999999999873 356788999999999999999999999999999999999999998
Q ss_pred cCc
Q 020628 316 MHP 318 (323)
Q Consensus 316 ~~~ 318 (323)
+.+
T Consensus 130 ~~~ 132 (196)
T 1aip_C 130 LNE 132 (196)
T ss_dssp HTT
T ss_pred HHc
Confidence 764
No 8
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=99.52 E-value=4e-14 Score=133.85 Aligned_cols=119 Identities=12% Similarity=0.037 Sum_probs=98.7
Q ss_pred HHHHHHHHH-Hhchhhhccccccccc--CCceEEEec-------------CCeEEEEEEecCCchhhhcHHHHHHHHHHH
Q 020628 106 IEAALKELR-KRGKVLASKKSSRTAT--EGLLALAQN-------------ESKAAVIELNCETDFVSRNEIFQYLALALA 169 (323)
Q Consensus 106 iekAi~~Lr-k~G~a~A~Kr~~R~a~--EGlV~~yv~-------------~~~avlVElncETDFVArn~~F~~Lak~IA 169 (323)
++.++..+. +.|+++..+|+.+... +|.|+.|+| |++||||++.|+.+. ..+.+++++||
T Consensus 140 v~d~i~~~ia~iGEni~lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~----~~l~~~ak~iA 215 (291)
T 1xb2_B 140 LKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELK----ANLADLGRRLG 215 (291)
T ss_dssp HHHHHHHHHHHHCSCEEEEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCG----GGCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCcc----chHHHHHHHHH
Confidence 899998888 7899999999988875 489999999 678999999996531 22347899999
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHHhcccccCCCCCC-CCcccHHHHHHHHHHhhccceEEeEEEEeeecC
Q 020628 170 KQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKI-GGETTVQNAITEVAAIMGENVKLRRGFLLSASS 238 (323)
Q Consensus 170 ~~iaa~~~~~p~~~~~~~v~~e~l~~~~~lldq~~i-d~~~TV~d~i~e~ia~~GEnI~L~Rf~r~~~~~ 238 (323)
|||++++ |.+++..++.. -..++.|||+|||+ |++.||++.|.+ .+|+|++|.||++.+
T Consensus 216 mHIaA~~---P~~l~~~~v~~-gf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~i~V~~F~RfevGE 275 (291)
T 1xb2_B 216 QHVVGMA---PLSVGSLDDEP-GGEAETKMLSQPYLLDPSITLGQYVQP------HGVSVVDFVRFECGE 275 (291)
T ss_dssp HHHHHHC---CSBCCCTTSCC-CGGGCCBGGGSBCTTCTTSBHHHHHGG------GTCEEEEEEEEETTC
T ss_pred HHHHhcC---CcccCHHHhhc-cchhheeeccCcccCCCCcCHHHHHHh------CCCEEEEEEEEEecC
Confidence 9999999 77888776632 24456799999999 889999997776 479999999999754
No 9
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.27 E-value=9.5e-12 Score=135.79 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=90.5
Q ss_pred HhchhhhcccccccccCCceEEEecC-CeEEEEEEecCCchhhhcHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 020628 115 KRGKVLASKKSSRTATEGLLALAQNE-SKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYL 193 (323)
Q Consensus 115 k~G~a~A~Kr~~R~a~EGlV~~yv~~-~~avlVElncETDFVArn~~F~~Lak~IA~~iaa~~~~~p~~~~~~~v~~e~l 193 (323)
+.|+++..+|+.+... |.|+.|+|+ ++||||++.+. | .+++++|||||++++ |.+++.++||++.+
T Consensus 125 ~iGEni~lrR~~~~~~-~~v~~Y~Hg~kigvlV~~~~~-~--------~~~ak~iAMhIaA~~---P~~l~~~~vp~~~v 191 (1289)
T 3avx_A 125 KIGENINIRRVAALEG-DVLGSYQHGARIGVLVAAKGA-D--------EELVKHIAMHVAASK---PEFIKPEDVSAEVV 191 (1289)
T ss_dssp TTCSCCEEEEEEEEEC-SEEEEEEETTTEEEEEEEESC-C--------HHHHHHHHHHHHHHC---CSBSSTTTSCTTHH
T ss_pred hhccceEEeEEEEEEC-CEEEEEecCCeEEEEEEecCC-c--------HHHHHHHHHHHHhcC---CeecchhhCCHHHH
Confidence 5799999999999874 999999998 89999999983 2 168999999999998 88999999999888
Q ss_pred hccc--------------------------------ccCCCCCC-CCcccHHHHHHHHHHhhccceEEeEEEEeeec
Q 020628 194 EGLK--------------------------------LNLDHPKI-GGETTVQNAITEVAAIMGENVKLRRGFLLSAS 237 (323)
Q Consensus 194 ~~~~--------------------------------~lldq~~i-d~~~TV~d~i~e~ia~~GEnI~L~Rf~r~~~~ 237 (323)
++|+ ||++|+|+ |+++||++.+++ . ++++++|.|+++.
T Consensus 192 e~E~~i~~~~a~~~gKPe~i~eKiveGrl~Kf~~E~~Ll~Q~fv~d~~~TV~~llke----~--~a~V~~FvRfEVG 262 (1289)
T 3avx_A 192 EKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKE----H--NAEVTGFIRFEVG 262 (1289)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTBSTTSBCTTSTTSBHHHHHHT----T--TCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhccCCceeecCccCHHHHHHh----c--CcEEEEeeeEecc
Confidence 7653 89999999 899999996655 3 6999999999874
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.55 E-value=0.00012 Score=48.28 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKEL 113 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~L 113 (323)
+.|++|.+. |.+--.|++||..++||++.|++||
T Consensus 6 ~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 579999998 9999999999999999999999998
No 11
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.54 E-value=0.00011 Score=59.21 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
+.|++|.++||.+-.+|++||.++|||++.|++.|...+
T Consensus 41 ekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999654
No 12
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.08 E-value=0.00057 Score=46.07 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
+.|++|.++ |-+-.+|++||..++||++.|++||-.
T Consensus 6 ~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 578999875 899999999999999999999999963
No 13
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.81 E-value=0.0015 Score=46.22 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 78 ~~lIK~LR~~Tga-~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
-+.|.+|+++ |- .-..|.+||..++||++.|++||-..+
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3568888876 56 778999999999999999999997643
No 14
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.79 E-value=0.0017 Score=45.78 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHhcCCcHHHHHHHHH
Q 020628 78 VNLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELR 114 (323)
Q Consensus 78 ~~lIK~LR~~Tga-~~~dCKkAL~e~~gDiekAi~~Lr 114 (323)
-+.|.+|+++ |- .-..|.+||..++||++.|++||-
T Consensus 13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3578999987 66 788999999999999999999995
No 15
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.71 E-value=0.0027 Score=45.16 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHhcCCcHHHHHHHHHHhch
Q 020628 79 NLIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKRGK 118 (323)
Q Consensus 79 ~lIK~LR~~Tga~-~~dCKkAL~e~~gDiekAi~~Lrk~G~ 118 (323)
+.|.+|+++ |.. -..+.+||..++||++.|++||-..+.
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 478999987 542 244799999999999999999986653
No 16
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.57 E-value=0.0033 Score=43.28 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHhcCCcHHHHHHHHH
Q 020628 79 NLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELR 114 (323)
Q Consensus 79 ~lIK~LR~~Tga-~~~dCKkAL~e~~gDiekAi~~Lr 114 (323)
+.|.+|+++ |- .-..+.+||..++||++.|++||-
T Consensus 9 ~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 9 HQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 468889887 53 356689999999999999999995
No 17
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0027 Score=46.39 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
+.|++|-++ |-+--.|++||..++||++.|++||-..
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 11 DCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 579999986 9999999999999999999999999864
No 18
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.53 E-value=0.0046 Score=46.00 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
+.|.+||++=-.--..|.+||.+++||++.|++||...+
T Consensus 21 ~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 21 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 468888876545667889999999999999999998654
No 19
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.50 E-value=0.003 Score=43.94 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
+.|++|-++ |-+-.+|++||..++||++.|++||-.
T Consensus 10 ~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 10 TMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 578899876 899999999999999999999999964
No 20
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.44 E-value=0.0035 Score=45.98 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
+.|++|-+ .|-+-.+|++||..++||++.|++||....
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 57888876 489999999999999999999999998653
No 21
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.43 E-value=0.0045 Score=44.70 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga-~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
+.|.+|+++ |- .-..+.+||..++||+++|++||-.
T Consensus 19 ~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 478999987 54 4668899999999999999999974
No 22
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.42 E-value=0.0024 Score=46.92 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC-cHHHHHHHHHHh
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKR 116 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~g-DiekAi~~Lrk~ 116 (323)
+.|.+|-++ |-+--.|++||..++| |++.|++||-..
T Consensus 21 ~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 368899885 9999999999999998 999999999753
No 23
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.29 E-value=0.0062 Score=46.14 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSA-PMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga-~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
+.|.+|+++ |. .-..+.+||..++||++.|++||..
T Consensus 31 ~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 578999987 54 4678899999999999999999974
No 24
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.20 E-value=0.0046 Score=49.64 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHH
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKEL 113 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~L 113 (323)
.++|..++++||++-.+.++||.++|||+-.|+-+|
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 368999999999999999999999999999999876
No 25
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.0082 Score=45.34 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC-cHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~g-DiekAi~~Lrk~G 117 (323)
+.|++|-++ |-+--.|++||..++| |+|.|++||-...
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 11 SVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 579999985 9999999999999996 8999999998754
No 26
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.98 E-value=0.01 Score=45.80 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
+.|.+|-++ |-+--.|++||..++||++.|++||-...
T Consensus 31 ~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 31 AALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 578999985 99999999999999999999999998653
No 27
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.87 E-value=0.0083 Score=45.31 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
+.|++|-++ |.+--++++||..++||++.|++||..
T Consensus 31 e~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 579999875 899999999999999999999999974
No 28
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.77 E-value=0.015 Score=43.75 Aligned_cols=37 Identities=19% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
+.|++|-+. |-+--.|++||..++||++.|++||-..
T Consensus 31 ~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 31 SSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 578999876 8999999999999999999999999754
No 29
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.68 E-value=0.02 Score=39.11 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
+.|.+|-+. |-+-..|++||..++ |+|.|++||-.
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 578999885 899999999999995 99999999963
No 30
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.65 E-value=0.011 Score=43.28 Aligned_cols=38 Identities=26% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhc-CCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDC-DWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~-~gDiekAi~~Lrk~G 117 (323)
+.|.+|-++ |-+--.|++||..+ +||++.|++||-...
T Consensus 11 ~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 11 TALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 378899874 99999999999999 799999999998653
No 31
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=95.50 E-value=0.032 Score=40.32 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 77 ~~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
+-++|.++..+||.-+-=|.+.|++++||++.|+....+
T Consensus 7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457999999999999999999999999999999998764
No 32
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.38 E-value=0.019 Score=42.14 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC-cHHHHHHHHHHhc
Q 020628 80 LIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKRG 117 (323)
Q Consensus 80 lIK~LR~~Tga~~~dCKkAL~e~~g-DiekAi~~Lrk~G 117 (323)
.|++|-+ -|-+--.|++||..++| |++.|++||-...
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp SHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 6889988 59999999999999987 9999999998654
No 33
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.36 E-value=0.024 Score=43.90 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
-+.|++|-+. |.+--.|++||..++||++.|++||-.+.
T Consensus 22 ~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 3579999885 99999999999999999999999998643
No 34
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.22 E-value=0.029 Score=43.38 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
+.|++|-++ |-+--.|++||..++||++.|++||-..
T Consensus 31 e~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 31 ESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 579999987 8999999999999999999999999864
No 35
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=95.15 E-value=0.035 Score=39.88 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 77 ~~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
+-++|.+|..+||.-+-=|.+.|++++||+++|+....+.
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3579999999999999999999999999999999998764
No 36
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.03 E-value=0.014 Score=42.62 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 80 lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
.|..|= .-|-+--..++||.+++||+|.|.+||-..
T Consensus 22 ~V~~Lv-sMGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 22 CVETVV-NMGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455554 346778899999999999999999999754
No 37
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=95.00 E-value=0.027 Score=45.60 Aligned_cols=39 Identities=28% Similarity=0.195 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
+.|.+||++=-..--.|.+||..++||++.|++||-..|
T Consensus 68 ~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 68 PQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 467777764322335799999999999999999998543
No 38
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=94.97 E-value=0.037 Score=37.92 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHhcCCcHHHHHH
Q 020628 78 VNLIKQLREQTSAP-MKDVKLALVDCDWDIEAALK 111 (323)
Q Consensus 78 ~~lIK~LR~~Tga~-~~dCKkAL~e~~gDiekAi~ 111 (323)
=++|.+....||+. +-.|+.=|+.+|||++.|+.
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 36899999999976 79999999999999999974
No 39
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.94 E-value=0.022 Score=46.79 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 77 ~~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
....|.+|.+. |-+-..+|+||..++||+|+|++||-.+
T Consensus 76 ~~~~v~~L~eM-GF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEM-GFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34567777654 7899999999999999999999999754
No 40
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.93 E-value=0.039 Score=42.61 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC-CcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCD-WDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~-gDiekAi~~Lrk~G 117 (323)
+.|.+|-++ |-+--.|++||..++ ||++.|++||-...
T Consensus 31 ~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 31 EIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 589999985 999999999999995 89999999998643
No 41
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=94.83 E-value=0.032 Score=45.77 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
+.|++|-+. |.+--.|++||..++||++.|++||-..
T Consensus 80 ~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 80 EIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp HHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 579999885 9999999999999999999999999753
No 42
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=93.50 E-value=0.0067 Score=50.06 Aligned_cols=40 Identities=30% Similarity=0.238 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHhcCCcHHHHHHHHHHhchh
Q 020628 80 LIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKRGKV 119 (323)
Q Consensus 80 lIK~LR~~Tga~-~~dCKkAL~e~~gDiekAi~~Lrk~G~a 119 (323)
+|.+||+-||.. ..--.+||+++|||+.+|+.+|-.+-..
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~ 61 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVK 61 (129)
Confidence 799999999987 7778899999999999999999865433
No 43
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.69 E-value=0.097 Score=39.54 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAP-MKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~-~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
-++.+||+-||.- ..--.+||++++||+..|+-+|-.+-
T Consensus 26 ~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 3899999999953 55567999999999999999998553
No 44
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.68 E-value=0.023 Score=39.13 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
+.|.+|-.. |-+-..|.+||..|+||.+.|..||-.
T Consensus 6 eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 467777544 889999999999999999999999953
No 45
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.89 E-value=0.086 Score=43.18 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC-cHHHHHHHHHHhch
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKRGK 118 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~g-DiekAi~~Lrk~G~ 118 (323)
+.|.+|-+ -|-+...|++||..++| |++.|++||-....
T Consensus 5 ~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 5 SSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp HHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 36778876 78999999999999975 99999999987644
No 46
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=92.88 E-value=0.2 Score=33.56 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
++|.+...-||++-..|+.-|+.++||++.|+...-.
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 5899999999999999999999999999999986543
No 47
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=92.86 E-value=0.075 Score=43.54 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
-++|.+|-. -|.|...|++||..+++|.|+|++||....
T Consensus 9 ~~~v~~l~~-MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 9 RQCVETVVN-MGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 357777755 589999999999999999999999998653
No 48
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.89 E-value=0.21 Score=36.82 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 78 VNLIKQLREQTS-APMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 78 ~~lIK~LR~~Tg-a~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
-++|.+...-|| .....|+.-|+.++||++.|+...-.
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 468999999999 99999999999999999999987654
No 49
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.73 E-value=0.31 Score=34.60 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhch
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGK 118 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G~ 118 (323)
...+.+|+++==.--...++||..++||+++||+.|-..+.
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSG 50 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 34788999875556788999999999999999999986654
No 50
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.12 E-value=0.46 Score=34.28 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
-++|.+...-||+.-..|+.-|+.++||++.|+...-..+
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 3689999999999999999999999999999998776543
No 51
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=89.32 E-value=0.66 Score=32.20 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=33.9
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQ-TSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~-Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
+.++.|=++ -.....+.|-.|..++||+|.|+..|-.+.
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 467788888 668899999999999999999999998764
No 52
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=88.36 E-value=0.58 Score=32.87 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
+.|++|=. -|.+-.+..+||..++||+|-|-.+|++-
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 46777765 48999999999999999999999999974
No 53
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.31 E-value=0.8 Score=33.55 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
++|.+.-.-||+.-..++.-|+.++||+|.|+...-+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 5799999999999999999999999999999987653
No 54
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.10 E-value=0.61 Score=32.89 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 80 lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
-|++|=. -|.+--+..+||..++||+|-|-.+||+..
T Consensus 12 ~I~~L~~-lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 12 EIERLMS-QGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4777754 489999999999999999999999999754
No 55
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=87.67 E-value=1.1 Score=32.17 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHHHHHHHHc-CCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 79 NLIKQLREQT-SAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 79 ~lIK~LR~~T-ga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
+.|+.|++.- +..--..+..|.+++||+|.||+.|-+.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 6889999885 3566678999999999999999999764
No 56
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=85.59 E-value=0.97 Score=30.92 Aligned_cols=36 Identities=31% Similarity=0.316 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 81 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 81 IK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
|..|=. -|..--+.++||.-+++|++.|-.+||+..
T Consensus 8 I~~L~s-~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 8 IENLMS-QGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HHHHHH-TTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHH-cCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 444433 478888999999999999999999999754
No 57
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=82.89 E-value=1.3 Score=33.27 Aligned_cols=42 Identities=31% Similarity=0.346 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCC---------cHHHHHHHHHHhch
Q 020628 77 QVNLIKQLREQTSAPMKDVKLALVDCDW---------DIEAALKELRKRGK 118 (323)
Q Consensus 77 ~~~lIK~LR~~Tga~~~dCKkAL~e~~g---------DiekAi~~Lrk~G~ 118 (323)
.+..||.+|+-||.|+++.|+..+.+.. +-|+...-|.+-|.
T Consensus 19 Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA 69 (74)
T 1ctf_A 19 KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGA 69 (74)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 4779999999999999999988876532 33444555555553
No 58
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=82.02 E-value=1.3 Score=31.44 Aligned_cols=38 Identities=29% Similarity=0.250 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
+.|..|=. -|..-.|.++||.-+++|++-|-.+|++-.
T Consensus 9 ~~Ia~L~s-mGfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 9 SEIENLMS-QGYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 35666654 488999999999999999999999999754
No 59
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=79.64 E-value=2.8 Score=36.66 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
-+.|++|.++ |-+=.++.+||..++||++.|+++|-.
T Consensus 164 eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4578888665 888899999999999999999999853
No 60
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=79.29 E-value=0.38 Score=43.89 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
.++|.++..+||.-+-=|.+.|++++||++.|+....+
T Consensus 199 ~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F~~ 236 (250)
T 1jkg_B 199 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 236 (250)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46999999999999999999999999999999988653
No 61
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=77.78 E-value=5.1 Score=31.97 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
++.|+.|=+++..-+.+.-|||-++.||+++|..+|..
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhC
Confidence 67889999999999999999999999999999999984
No 62
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=77.20 E-value=0.9 Score=43.89 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lr 114 (323)
+.|.+|-+ -|.+--+|++||..++||.|.|++||-
T Consensus 170 ~~i~~l~~-MGf~~~~~~~AL~a~~nn~~~A~e~L~ 204 (368)
T 1oqy_A 170 TMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLL 204 (368)
T ss_dssp HHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57888864 589999999999999999999999995
No 63
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=76.14 E-value=3.2 Score=34.38 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 020628 77 QVNLIKQLREQTSAPMKDVKLALVDCDW 104 (323)
Q Consensus 77 ~~~lIK~LR~~Tga~~~dCKkAL~e~~g 104 (323)
.+..||.+|.-||.|+++.|+-.+.+..
T Consensus 70 KI~VIK~VR~itgLgLKEAK~lVe~aP~ 97 (128)
T 1dd3_A 70 KIQVIKVVREITGLGLKEAKDLVEKAGS 97 (128)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHTTTTS
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHhCCc
Confidence 3679999999999999999887776654
No 64
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.56 E-value=4.8 Score=29.56 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=31.7
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 79 NLIKQLREQTS-APMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 79 ~lIK~LR~~Tg-a~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
+.+++|+++-- ..--..+..|++++||+|.||+-|-..
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47888998853 556678999999999999999998753
No 65
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=74.77 E-value=2 Score=30.34 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC-cHHHHHHHHHHhch
Q 020628 80 LIKQLREQTSAPMKDVKLALVDCDW-DIEAALKELRKRGK 118 (323)
Q Consensus 80 lIK~LR~~Tga~~~dCKkAL~e~~g-DiekAi~~Lrk~G~ 118 (323)
++.+|=+ -|.+---.-+||..+++ .++.|++||.|.+.
T Consensus 12 mlq~L~e-MGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 12 MLQELVN-AGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 3555543 35666677799999985 79999999998764
No 66
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=66.92 E-value=6.2 Score=32.33 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDC 102 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~ 102 (323)
+..||.+|.-||.|+++.|+-.+.+
T Consensus 69 I~VIK~VR~itgLgLkEAK~lVe~a 93 (122)
T 2zjq_5 69 INVIKEIRGITGLGLKEAKDMSEKG 93 (122)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6799999999999999998765433
No 67
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=66.45 E-value=6.3 Score=32.45 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDC 102 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~ 102 (323)
+..||.+|.-||.|+++.|+-.+.+
T Consensus 72 I~VIK~VR~itgLgLkEAK~lVe~a 96 (125)
T 2j01_L 72 LEVIKELRAITGLGLKEAKDLAEKG 96 (125)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6799999999999999998765433
No 68
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=63.31 E-value=8.7 Score=35.05 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
-+.|++|.++ |.+=.++..||..+|||++.|++.|-.
T Consensus 216 ~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4578888776 789999999999999999999998853
No 69
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=56.18 E-value=4.6 Score=38.87 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
.+.|.+|=.+ |-+-..|++||..|+||.+.|.+||-..
T Consensus 326 ~eaI~rL~~m-GF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 326 KEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp HHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 4577777655 8999999999999999999999999854
No 70
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=54.83 E-value=14 Score=31.95 Aligned_cols=38 Identities=26% Similarity=0.143 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
.+.|++|-.. |.+=-.|.+||..|+||.+.|..+|-..
T Consensus 131 ~eaI~rL~~m-GF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 131 DQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4678888766 8999999999999999999999999643
No 71
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=54.62 E-value=47 Score=24.53 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCcHHHHHHHHHHhchhhhccccccc
Q 020628 75 TEQVNLIKQLREQT-SAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRT 128 (323)
Q Consensus 75 ~~~~~lIK~LR~~T-ga~~~dCKkAL~e~~gDiekAi~~Lrk~G~a~A~Kr~~R~ 128 (323)
.+.+++|.++|+-- ..|..-..+.|...|+|+|..+..|-+.-.--..+..+|.
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~~ldr~ 65 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRN 65 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTTTSCTT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHHhcCcc
Confidence 45578899999876 4888889999999999999999999987665555555554
No 72
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=52.19 E-value=16 Score=30.44 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=22.8
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHhcC
Q 020628 77 QVNLIKQLREQ-TSAPMKDVKLALVDCD 103 (323)
Q Consensus 77 ~~~lIK~LR~~-Tga~~~dCKkAL~e~~ 103 (323)
.+..||.+|.- ||.|+++.|+-.+.+-
T Consensus 81 KI~VIK~VR~i~TgLgLkEAK~lVe~aP 108 (137)
T 2ftc_E 81 KVKLIKEIKNYVQGINLVQAKKLVESLP 108 (137)
T ss_pred hhHHHHHHHHhccCCChHHHHHHHHhCC
Confidence 37799999996 9999999998776553
No 73
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=50.63 E-value=20 Score=32.98 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhch
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGK 118 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~G~ 118 (323)
-++|.+...-||++-..++.-|++++||++.|+.-.-..+.
T Consensus 16 ~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 16 QEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 45899999999999999999999999999999998776554
No 74
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=50.33 E-value=9.6 Score=27.98 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=30.1
Q ss_pred hhhhhccCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 020628 63 ISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCD 103 (323)
Q Consensus 63 ~~r~~ss~~p~~~~~~~lIK~LR~~Tga~~~dCKkAL~e~~ 103 (323)
-.|.|+.. ....+..|+.||+..|.++.+.|+.|...+
T Consensus 41 g~R~Y~~~---dl~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 41 NYRVYSRE---EVEAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp SSCEECHH---HHHHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred CeeecCHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 34667755 245578899999999999999999998654
No 75
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=50.29 E-value=13 Score=30.75 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=39.9
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 62 LISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 62 ~~~r~~ss~~p~~~~~~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
.-.|.|+.. ....+..|+.|| ..|.|+.+.|+-|...+.+.+...+.|...
T Consensus 38 ~g~R~Y~~~---dl~~l~~I~~lr-~~G~sl~~I~~~l~~~~~~~~~~~~~L~~q 88 (146)
T 3hh0_A 38 GGHRLYTKD---DLYVLQQIQSFK-HLGFSLGEIQNIILQRDIETEVFLRQMHFQ 88 (146)
T ss_dssp TSCEEBCHH---HHHHHHHHHHHH-HTTCCHHHHHHHHTSSEEEHHHHHHHHHHH
T ss_pred CCCEeeCHH---HHHHHHHHHHHH-HcCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 345778755 245578899998 689999999999998888888887777643
No 76
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=48.65 E-value=12 Score=39.86 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 80 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 80 lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
.|..|-. .|.....+++||.+++||++.|++||-..
T Consensus 723 ~i~~l~~-mGf~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 723 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 4445533 57888899999999999999999999853
No 77
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=44.60 E-value=19 Score=30.76 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHhcCCcHHHHHHHHHH
Q 020628 90 APMKDVKLALVDCDWDIEAALKELRK 115 (323)
Q Consensus 90 a~~~dCKkAL~e~~gDiekAi~~Lrk 115 (323)
..--||-+||.+++||++.|+..|.+
T Consensus 115 ~~~~~~~~aL~~~~Gdv~~Al~eLqr 140 (162)
T 4dbg_B 115 GPEEGSLQALFQHGGDVSRALTELQR 140 (162)
T ss_dssp CGGGTHHHHHHHTTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34557888888888888888887764
No 78
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.76 E-value=32 Score=28.18 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=37.0
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHhc---CCcHHHHHHHHHHh
Q 020628 62 LISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDC---DWDIEAALKELRKR 116 (323)
Q Consensus 62 ~~~r~~ss~~p~~~~~~~lIK~LR~~Tga~~~dCKkAL~e~---~gDiekAi~~Lrk~ 116 (323)
.-.|.|+.. ....+..|+.|| ..|.|+.+.|+-|... +.+.+...+.|+++
T Consensus 36 ~g~R~Y~~~---dl~~l~~I~~lr-~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~ 89 (142)
T 3gp4_A 36 SGVRKFGAE---DLRWILFTRQMR-RAGLSIEALIDYLALFREGEHTLEARAELLKKQ 89 (142)
T ss_dssp TSCBCBCHH---HHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCeeeCHH---HHHHHHHHHHHH-HcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 445778755 255688999997 6799999999988742 34667777777654
No 79
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=41.63 E-value=5.5 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcC
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCD 103 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~ 103 (323)
+..||.+|.-||.|+++.|+-.+.+.
T Consensus 67 i~VIK~VR~itgLgLkEAK~lVe~aP 92 (121)
T 3sgf_J 67 VAVIKAVRGATGLGLKEAKDLVESAP 92 (121)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 67999999999999999987766543
No 80
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.42 E-value=30 Score=28.47 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=36.4
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHhc---CCcHHHHHHHHHHh
Q 020628 62 LISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDC---DWDIEAALKELRKR 116 (323)
Q Consensus 62 ~~~r~~ss~~p~~~~~~~lIK~LR~~Tga~~~dCKkAL~e~---~gDiekAi~~Lrk~ 116 (323)
.-.|.|+.. ....+..|+.||+ .|.|+.+.|+-|... +.+.+...+.|.++
T Consensus 50 ~g~R~Y~~~---dl~~l~~I~~lr~-~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~ 103 (148)
T 3gpv_A 50 KGDRIFNEE---ALKYLEMILCLKN-TGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQ 103 (148)
T ss_dssp TCCEEBCHH---HHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCeecCHH---HHHHHHHHHHHHH-cCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Confidence 345778755 2556889999965 899999999999842 34566666776643
No 81
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=39.17 E-value=11 Score=26.39 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCHHHHH----HHHHhcCCcHHHHHHHHHH
Q 020628 79 NLIKQLREQTSAPMKDVK----LALVDCDWDIEAALKELRK 115 (323)
Q Consensus 79 ~lIK~LR~~Tga~~~dCK----kAL~e~~gDiekAi~~Lrk 115 (323)
.++..|.+.-..|+.+|- +.|+..+|||.+|++.|..
T Consensus 9 rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 9 RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence 467788888888998874 8999999999999999874
No 82
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A
Probab=34.62 E-value=21 Score=27.04 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHhchhhhcccccccccCCceEEEecCCeEEEEEEe
Q 020628 104 WDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELN 149 (323)
Q Consensus 104 gDiekAi~~Lrk~G~a~A~Kr~~R~a~EGlV~~yv~~~~avlVEln 149 (323)
.|++++.+.|+++|......-..+....|.-..|+..--|.+|||-
T Consensus 86 ~di~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~dPdG~~iEl~ 131 (133)
T 3hdp_A 86 EDIQKSIEEMSQIGYTLFKKAEIAPAIDNRKVAFLFSTDIGLIELL 131 (133)
T ss_dssp SCHHHHHHHHTTTTEEEEEEEEEEGGGTTEEEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHcCCccccCCeecccCCCceEEEEECCCceEEEEe
Confidence 3899999999999987653322233345766677754455788873
No 83
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=31.28 E-value=1.1e+02 Score=22.97 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 020628 78 VNLIKQLREQTSAPMKDVKLALVDCDW 104 (323)
Q Consensus 78 ~~lIK~LR~~Tga~~~dCKkAL~e~~g 104 (323)
++.|..|.+++|++..--+|.+++...
T Consensus 17 ~eAI~~Lker~GsS~~AI~KyI~~~y~ 43 (88)
T 2rqp_A 17 TEAIKACFQKSGASVVAIRKYIIHKYP 43 (88)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHCS
T ss_pred HHHHHHhccCCCcCHHHHHHHHHHhCC
Confidence 678999999999999999999999855
No 84
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=30.78 E-value=13 Score=34.35 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=10.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHH
Q 020628 81 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (323)
Q Consensus 81 IK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lr 114 (323)
..-+++.||++-.+|+++|.+++|++..|+..+.
T Consensus 248 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~ 281 (306)
T 1nri_A 248 VRIVMQATDCNKTLAEQTLLEADQNAKLAIMMIL 281 (306)
T ss_dssp HHHHHHHSCCCC----------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHH
Confidence 5567888999999999999999999999998864
No 85
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=30.04 E-value=42 Score=26.08 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=33.5
Q ss_pred cCCcHHHHHHHHHHhchhhhcccccccccCC-ceEEEecCCeEEEEEEecCCch
Q 020628 102 CDWDIEAALKELRKRGKVLASKKSSRTATEG-LLALAQNESKAAVIELNCETDF 154 (323)
Q Consensus 102 ~~gDiekAi~~Lrk~G~a~A~Kr~~R~a~EG-lV~~yv~~~~avlVElncETDF 154 (323)
...|++++.+.|++.|......-..+....| .-..|+..--|-+|||.+.++.
T Consensus 93 ~~~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 146 (152)
T 3huh_A 93 TSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQYVEG 146 (152)
T ss_dssp ESSCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECTTCCEEEEEEC---
T ss_pred ecCCHHHHHHHHHHCCCeEecCCccccCCCCcEEEEEEECCCCCEEEEEecccC
Confidence 3459999999999999876543222322223 2455665556788999997764
No 86
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=25.77 E-value=80 Score=26.91 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcC-----CCHHHHHHHHHhcCCcHHHHHHHHHHhc
Q 020628 78 VNLIKQLREQTS-----APMKDVKLALVDCDWDIEAALKELRKRG 117 (323)
Q Consensus 78 ~~lIK~LR~~Tg-----a~~~dCKkAL~e~~gDiekAi~~Lrk~G 117 (323)
++.|..|=.+.| .+-.+.|+||..++||+++|+......-
T Consensus 58 l~~V~~la~~~~~~~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R 102 (162)
T 4dbg_B 58 LEMVAELAGQQDPGLGAFSCQEARRAWLDRHGNLDEAVEECVRTR 102 (162)
T ss_dssp HHHHHHHHHHHCGGGCCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcccHHHHHHHHHHccCChHHHHHHHHHHH
Confidence 445666655554 3348999999999999999999886433
No 87
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.20 E-value=1.1e+02 Score=22.69 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHhcCCcHHHHHHHHHHh
Q 020628 78 VNLIKQLREQTS-APMKDVKLALVDCDWDIEAALKELRKR 116 (323)
Q Consensus 78 ~~lIK~LR~~Tg-a~~~dCKkAL~e~~gDiekAi~~Lrk~ 116 (323)
|.++.+||++-- .|-.-.-+-+.+.++|+|+.+..|.+.
T Consensus 11 ~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 11 FQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 779999999876 777777777999999999999999863
No 88
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.65 E-value=54 Score=25.88 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=25.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhcC-CcHHHHHHHHHHh
Q 020628 82 KQLREQTSAPMKDVKLALVDCD-WDIEAALKELRKR 116 (323)
Q Consensus 82 K~LR~~Tga~~~dCKkAL~e~~-gDiekAi~~Lrk~ 116 (323)
-+|=--.|-.=..|-+||.++. ||+++|.+.|++-
T Consensus 11 m~iI~~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 11 FEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444545567889999885 9999999999853
No 89
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.51 E-value=55 Score=25.75 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=23.6
Q ss_pred HHcCCCHHHHHHHHHhcC-CcHHHHHHHHHHh
Q 020628 86 EQTSAPMKDVKLALVDCD-WDIEAALKELRKR 116 (323)
Q Consensus 86 ~~Tga~~~dCKkAL~e~~-gDiekAi~~Lrk~ 116 (323)
--.|-.=..|-+||.++. ||+++|.+.|++-
T Consensus 13 ~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 13 INSGQARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444457889999885 9999999999853
No 90
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.62 E-value=85 Score=27.56 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=32.2
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHH
Q 020628 62 LISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELR 114 (323)
Q Consensus 62 ~~~r~~ss~~p~~~~~~~lIK~LR~~Tga~~~dCKkAL~e~~gDiekAi~~Lr 114 (323)
...|.|+.. ....+..|+.||+ .|.|+.+.|+-|... .+...+.|+
T Consensus 40 ~g~R~y~~~---~~~~l~~i~~l~~-~g~~l~~i~~~~~~~---~~~~~~~l~ 85 (278)
T 1r8e_A 40 TSYRYYTDS---QLIHLDLIKSLKY-IGTPLEEMKKAQDLE---MEELFAFYT 85 (278)
T ss_dssp TCCEEEETG---GGGHHHHHHHHHH-TTCCHHHHHHHTTSC---HHHHHHHHH
T ss_pred CCccccCHH---HHHHHHHHHHHHH-CCCCHHHHHHHHHhC---hHHHHHHHH
Confidence 345778866 2556889999965 599999999988654 334444444
No 91
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.99 E-value=1.2e+02 Score=24.23 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=35.5
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHhc---CCcHHHHHHHHHHh
Q 020628 62 LISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDC---DWDIEAALKELRKR 116 (323)
Q Consensus 62 ~~~r~~ss~~p~~~~~~~lIK~LR~~Tga~~~dCKkAL~e~---~gDiekAi~~Lrk~ 116 (323)
.-.|.|+.. ....+..|+.||+ .|.++.+.|+-|... +.+.+...+.|.++
T Consensus 34 ~g~R~Y~~~---dl~~l~~I~~lr~-~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~ 87 (135)
T 1q06_A 34 NGYRTYTQQ---HLNELTLLRQARQ-VGFNLEESGELVNLFNDPQRHSADVKRRTLEK 87 (135)
T ss_dssp TSCEECCHH---HHHHHHHHHHHHH-TTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCCeeeCHH---HHHHHHHHHHHHH-CCCCHHHHHHHHHhhhcCCchHHHHHHHHHHH
Confidence 345778755 2455778999965 699999999999753 23466666666543
Done!