Query 020629
Match_columns 323
No_of_seqs 157 out of 470
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 63.1 1.3E+02 0.0046 31.3 14.7 151 33-191 20-192 (724)
2 2di0_A Activating signal coint 16.1 41 0.0014 25.0 0.7 18 294-311 20-37 (71)
3 2liy_A Epidermal patterning fa 12.2 23 0.00079 23.7 -1.5 17 5-21 18-34 (45)
4 2f8e_A VPG protein; RNA-depend 6.8 1.3E+02 0.0046 17.7 0.6 13 83-95 2-14 (26)
5 3pp4_P B-lymphocyte antigen CD 5.4 1.5E+02 0.0053 17.6 0.2 18 4-22 2-19 (25)
6 3bua_E HSNM1B, DNA cross-LINK 5.0 2.3E+02 0.0077 18.0 0.8 13 310-322 4-16 (36)
7 2q67_A Potassium channel prote 4.4 6.6E+02 0.022 19.1 3.5 23 278-300 45-72 (114)
8 3vou_A ION transport 2 domain 4.2 1.1E+03 0.039 18.4 4.9 23 278-300 48-75 (148)
9 1ceu_A Protein (HIV-1 regulato 3.4 3.6E+02 0.012 18.6 0.9 9 281-289 43-51 (51)
10 2k8j_X P7TM2; P7 polypeptide, 2.7 5.5E+02 0.019 15.7 1.1 10 275-284 7-17 (29)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=63.12 E-value=1.3e+02 Score=31.31 Aligned_cols=151 Identities=15% Similarity=0.213 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHh----cc-cccccceeeecCCcchhHhHHHHHH-hCCCCCCCCCCcccchhHHHHH------h
Q 020629 33 IRSLLWLSAIFRVILIVY----GE-WQDSHMEVRYTDVDYLVFSDAASLM-ASGDSPYKRTTYRYSPLLAFFL------I 100 (323)
Q Consensus 33 ~~~~l~~g~~lRl~L~~~----~~-~~d~~~elsyTdidy~rl~DG~~l~-~~G~sPY~~~tyhytPLLl~ll------~ 100 (323)
...+++.|+++|+.-..+ ++ ..|+.+-++ | .|-.-.-++++-. .++.+|-+.+.+ .|++.++. .
T Consensus 20 ~~~~~~~sl~~R~~~~~w~~~~~~f~~~~~~~~~-~-~D~yy~~r~ar~~l~~~~~p~~~~p~--g~~~~~l~a~l~~i~ 95 (724)
T 3rce_A 20 ILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMIT-T-NDGYAFAEGARDMIAGFHQPNDLSYF--GSSLSTLTYWLYSIL 95 (724)
T ss_dssp HHHHHHHHHHHHTHHHHHHSSCGGGEETTEECCS-C-HHHHHHHHHHHHHHHSCCCTTSCCCT--TCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhHHhhccCcceEECCEEeec-c-CCHHHHHHHHHHHHhcCCCCCCCCCC--cchHHHHHHHHHHHc
Confidence 446777899999874322 11 123344444 3 4643333344444 455566655433 34443332 1
Q ss_pred ccch-hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhcchhhhhhccCCC--chhHHHHHHHHHHHHHH
Q 020629 101 PNSI-IHRSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGN--CEPIVCAMILWIIICLL 177 (323)
Q Consensus 101 p~~~-~~p~~~kllf~l~Dll~a~ll~~i~~~~~~~~~~~~~~~~lyLfNPl~I~~s~~gs--~e~~~~~lvl~~Ly~~~ 177 (323)
+... ..-.+...+|...-++..+++ .++... +......+++-.+-|--+.=+..|. +|++..++.++++|+..
T Consensus 96 g~sl~~v~~~lp~ifg~L~vi~~yll---~~el~~-~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i 171 (724)
T 3rce_A 96 PFSFESIILYMSTFFASLIVVPIILI---AREYKL-TTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFI 171 (724)
T ss_dssp SSCHHHHHHHHHHHHGGGGHHHHHHH---HHHTTC-HHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHcC-chHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 1110 001233344444444444444 444332 2234455666778998777777776 78888888887777765
Q ss_pred ----hCCh---HHHHHHHHHH
Q 020629 178 ----KGNV---LQAAFWYGLV 191 (323)
Q Consensus 178 ----kg~~---~laa~~lala 191 (323)
+++. ++||+++|+.
T Consensus 172 ~alk~~~~~~~~lagl~~~ly 192 (724)
T 3rce_A 172 RLTINKDIFTLLLSPIFIMIY 192 (724)
T ss_dssp HHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 2332 3566655543
No 2
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=16.10 E-value=41 Score=24.96 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=15.5
Q ss_pred ecCCCCCCchhHHHHHHH
Q 020629 294 HGGVCGIQQGSFIRKCTS 311 (323)
Q Consensus 294 r~D~rPNi~~~~~~~~~~ 311 (323)
.+|+-|.+|..|+++|-.
T Consensus 20 V~DLfPdLG~gfi~~~L~ 37 (71)
T 2di0_A 20 VKDLLPDLGEGFILACLE 37 (71)
T ss_dssp HHHHCCSSCHHHHHHHHH
T ss_pred HHHHcccCCHHHHHHHHH
Confidence 478899999999999953
No 3
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=12.24 E-value=23 Score=23.71 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCcc
Q 020629 5 HFCDAEPAPAFSNLPSV 21 (323)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (323)
+-|.||++|.+-+.|--
T Consensus 18 ~~C~aeqvPvd~~dP~~ 34 (45)
T 2liy_A 18 YKCRAEQVPVEGNDPIN 34 (45)
T ss_dssp SEEEEEEEESSCSSSCS
T ss_pred cccceeeccccCCCccc
Confidence 56899999999888743
No 4
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=6.85 E-value=1.3e+02 Score=17.73 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=10.3
Q ss_pred CCCCCCcccchhH
Q 020629 83 PYKRTTYRYSPLL 95 (323)
Q Consensus 83 PY~~~tyhytPLL 95 (323)
||.|..-||.||=
T Consensus 2 pyagplerq~plk 14 (26)
T 2f8e_A 2 PYAGPLERQRPLK 14 (26)
T ss_pred CcCCchhhcCcce
Confidence 8888888888864
No 5
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=5.41 E-value=1.5e+02 Score=17.56 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCcch
Q 020629 4 SHFCDAEPAPAFSNLPSVS 22 (323)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (323)
-|||+. .-|.|.++||++
T Consensus 2 IynCE~-a~pse~nS~s~q 19 (25)
T 3pp4_P 2 IYNCEP-ANPSEKNSPSTQ 19 (26)
T ss_dssp CCCCSC-SSGGGTTCHHHH
T ss_pred cccccc-CCccccCCchhh
Confidence 378876 445566666554
No 6
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=4.97 E-value=2.3e+02 Score=18.03 Aligned_cols=13 Identities=46% Similarity=0.938 Sum_probs=10.5
Q ss_pred HHHHHHHhhccCC
Q 020629 310 TSLVLRYLLCPLE 322 (323)
Q Consensus 310 ~~~~~~~~~~~~~ 322 (323)
.+|.|.||+.|+.
T Consensus 4 r~LALKYLLTPv~ 16 (36)
T 3bua_E 4 RGLALKYLLTPVN 16 (36)
T ss_pred HHHHHHHHhhhHH
Confidence 4688999999863
No 7
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=4.44 E-value=6.6e+02 Score=19.13 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=16.4
Q ss_pred HhcHHHHHHhheeeEE-----ecCCCCC
Q 020629 278 LYGWEFLHEALLYHLT-----HGGVCGI 300 (323)
Q Consensus 278 iyG~~FL~etYlyhl~-----r~D~rPN 300 (323)
.-||+|.+.-|.-..| .-|..|.
T Consensus 45 ~e~~~~~~a~y~~~~T~tTvGyGdi~P~ 72 (114)
T 2q67_A 45 VEGLRPIDALYFSVVTLTTVGAGNFSPQ 72 (114)
T ss_dssp HSCCCHHHHHHHHHHHHTSCCCSSCCCC
T ss_pred hcCCCHHHHHHHHHHHhcceeCCCCccC
Confidence 5568898888876554 3488884
No 8
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=4.15 E-value=1.1e+03 Score=18.37 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=16.6
Q ss_pred HhcHHHHHHhheeeEE-----ecCCCCC
Q 020629 278 LYGWEFLHEALLYHLT-----HGGVCGI 300 (323)
Q Consensus 278 iyG~~FL~etYlyhl~-----r~D~rPN 300 (323)
.-||+|.+.-|.-..| .-|..|.
T Consensus 48 ~e~~~~~~a~y~~~~t~tTvGyGd~~p~ 75 (148)
T 3vou_A 48 VEGLRPLDALYFSVVTLTTVGDGNFSPQ 75 (148)
T ss_dssp TSCCCHHHHHHHHHHHHTTCCCSSCCCC
T ss_pred hcCCCHHHHHHHHHHHHHccCCCCCCCC
Confidence 4569999988876554 3688883
No 9
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=3.43 E-value=3.6e+02 Score=18.62 Aligned_cols=9 Identities=11% Similarity=-0.072 Sum_probs=6.1
Q ss_pred HHHHHHhhe
Q 020629 281 WEFLHEALL 289 (323)
Q Consensus 281 ~~FL~etYl 289 (323)
|+++++||+
T Consensus 43 gqyiy~~~g 51 (51)
T 1ceu_A 43 GQHIYETYG 51 (51)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHHhhC
Confidence 677777764
No 10
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=2.75 E-value=5.5e+02 Score=15.66 Aligned_cols=10 Identities=50% Similarity=1.288 Sum_probs=6.2
Q ss_pred HHHHhc-HHHH
Q 020629 275 FFYLYG-WEFL 284 (323)
Q Consensus 275 sy~iyG-~~FL 284 (323)
.|.++| |.++
T Consensus 7 tY~~~g~Wpll 17 (29)
T 2k8j_X 7 AYALYGVWPLL 17 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhHHHHH
Confidence 355667 7765
Done!