Query 020629
Match_columns 323
No_of_seqs 157 out of 470
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 05:51:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020629.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020629hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2di0a1 a.5.2.4 (A:8-70) Activ 18.7 14 0.00099 25.2 0.4 17 294-310 13-29 (63)
2 d1pjqa3 e.37.1.1 (A:114-215) S 4.6 83 0.006 22.3 0.2 17 149-165 7-23 (102)
3 d2qklb1 a.242.1.1 (B:2-91) mRN 3.7 1.2E+02 0.0085 21.6 0.3 33 284-316 37-70 (90)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.6 8.6E+02 0.063 19.4 6.2 16 191-206 63-78 (248)
5 d1bd8a_ d.211.1.1 (A:) Cell cy 3.0 5E+02 0.036 17.7 3.5 29 71-99 114-142 (156)
6 d1l0wa1 b.40.4.1 (A:1-104) Asp 2.9 1.7E+02 0.013 20.6 0.6 8 1-8 1-8 (104)
7 d1xrsb2 d.230.4.1 (B:33-84) D- 2.8 5.9E+02 0.043 15.9 3.2 26 58-83 2-31 (52)
8 d1iyjb2 a.171.1.1 (B:2761-2897 2.8 1.4E+02 0.01 22.7 0.0 24 60-83 58-84 (137)
9 d1j0aa_ c.79.1.1 (A:) 1-aminoc 2.7 4E+02 0.029 20.9 2.9 27 290-316 38-65 (325)
10 d1d2zb_ a.77.1.2 (B:) Tube dea 2.7 1.3E+02 0.0093 23.4 -0.4 28 57-84 61-88 (150)
No 1
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.74 E-value=14 Score=25.23 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=15.4
Q ss_pred ecCCCCCCchhHHHHHH
Q 020629 294 HGGVCGIQQGSFIRKCT 310 (323)
Q Consensus 294 r~D~rPNi~~~~~~~~~ 310 (323)
.+|+-|-+|.-|+++|-
T Consensus 13 V~Dl~PdLG~GFi~~~L 29 (63)
T d2di0a1 13 VKDLLPDLGEGFILACL 29 (63)
T ss_dssp HHHHCCSSCHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHH
Confidence 57899999999999995
No 2
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=4.60 E-value=83 Score=22.33 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=12.7
Q ss_pred chhhhhhccCCCchhHH
Q 020629 149 NPFTFTIGTRGNCEPIV 165 (323)
Q Consensus 149 NPl~I~~s~~gs~e~~~ 165 (323)
.|++|++||+|++=.+.
T Consensus 7 g~l~iAISTgG~sP~la 23 (102)
T d1pjqa3 7 SPLMVAVSSGGTSPVLA 23 (102)
T ss_dssp TTEEEEEECTTSCHHHH
T ss_pred CCeEEEEeCCCcChHHH
Confidence 58899999988765443
No 3
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=3.72 E-value=1.2e+02 Score=21.56 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=19.1
Q ss_pred HHHhheeeEE-ecCCCCCCchhHHHHHHHHHHHH
Q 020629 284 LHEALLYHLT-HGGVCGIQQGSFIRKCTSLVLRY 316 (323)
Q Consensus 284 L~etYlyhl~-r~D~rPNi~~~~~~~~~~~~~~~ 316 (323)
++++|+|+.. ..+..|++...=++.-+..+.++
T Consensus 37 iE~A~WfY~Df~~~~~p~Lp~~~~~~Fa~~if~~ 70 (90)
T d2qklb1 37 IEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAH 70 (90)
T ss_dssp HHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHH
Confidence 4566666553 33444565555567777776665
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.61 E-value=8.6e+02 Score=19.37 Aligned_cols=16 Identities=19% Similarity=0.596 Sum_probs=9.3
Q ss_pred HHHHhhhHHHHHHHHH
Q 020629 191 VVHFRIYPIIYVLPII 206 (323)
Q Consensus 191 av~lklYPiil~~pl~ 206 (323)
-+-+-+||++|-.-+.
T Consensus 63 l~~Fvi~Pi~yT~~ia 78 (248)
T d2r6gf1 63 MGLFVLFPLVCTIAIA 78 (248)
T ss_dssp HHHHTHHHHHHHHHGG
T ss_pred HHHHHHHhheeEEEEE
Confidence 3445577777665443
No 5
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.98 E-value=5e+02 Score=17.75 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=21.2
Q ss_pred hHHHHHHhCCCCCCCCCCcccchhHHHHH
Q 020629 71 SDAASLMASGDSPYKRTTYRYSPLLAFFL 99 (323)
Q Consensus 71 ~DG~~l~~~G~sPY~~~tyhytPLLl~ll 99 (323)
.|-++++..|.|+...+...+|||-....
T Consensus 114 ~~i~~~L~~~~~~~~~d~~G~TpL~~A~~ 142 (156)
T d1bd8a_ 114 TAVVSFLAAESDLHRRDARGLTPLELALQ 142 (156)
T ss_dssp HHHHHHHHTTSCTTCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccccCCCCCCHHHHHHH
Confidence 35566677888888888888888776654
No 6
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=2.89 E-value=1.7e+02 Score=20.63 Aligned_cols=8 Identities=25% Similarity=0.953 Sum_probs=5.0
Q ss_pred CCCCCCCC
Q 020629 1 MKKSHFCD 8 (323)
Q Consensus 1 ~~~~~~~~ 8 (323)
||++|+|.
T Consensus 1 m~RTh~~g 8 (104)
T d1l0wa1 1 MRRTHYAG 8 (104)
T ss_dssp CCCSSCGG
T ss_pred Cccccccc
Confidence 66666664
No 7
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=2.83 E-value=5.9e+02 Score=15.90 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=15.3
Q ss_pred ceeeec-CCcc-hhHhHHHHHH--hCCCCC
Q 020629 58 MEVRYT-DVDY-LVFSDAASLM--ASGDSP 83 (323)
Q Consensus 58 ~elsyT-didy-~rl~DG~~l~--~~G~sP 83 (323)
+++|+| |+.. .+=.|+|+-+ ..|.++
T Consensus 2 VQlSFTLPVp~g~~A~eAAk~la~kMGl~~ 31 (52)
T d1xrsb2 2 VQLSFTLPLKNNERSAEAAKQIALKMGLEE 31 (52)
T ss_dssp EEEEEEESSCSSHHHHHHHHHHHHTTSSCC
T ss_pred eeEEEEeeCCCChHHHHHHHHHHHHhCCCc
Confidence 445554 4545 7778887766 345543
No 8
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.80 E-value=1.4e+02 Score=22.68 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred eeecCCcchhHhHHHHHH---hCCCCC
Q 020629 60 VRYTDVDYLVFSDAASLM---ASGDSP 83 (323)
Q Consensus 60 lsyTdidy~rl~DG~~l~---~~G~sP 83 (323)
.++|+.|..-++||+.++ .++.||
T Consensus 58 ~s~t~~~v~~Lq~Gael~eale~a~Dp 84 (137)
T d1iyjb2 58 RALTRQQVHALQDGAELYAAVQDASDP 84 (137)
T ss_dssp ---------------------------
T ss_pred ccccHHHHHhcccHHHHHHHHHcCCCH
Confidence 457887777789999887 456676
No 9
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.72 E-value=4e+02 Score=20.92 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=20.3
Q ss_pred eeEEecCCCCCCchhH-HHHHHHHHHHH
Q 020629 290 YHLTHGGVCGIQQGSF-IRKCTSLVLRY 316 (323)
Q Consensus 290 yhl~r~D~rPNi~~~~-~~~~~~~~~~~ 316 (323)
..+.|+|..||-.++| .|+...++.+.
T Consensus 38 v~iK~Ed~~~~~tgS~K~R~~~~~i~~a 65 (325)
T d1j0aa_ 38 VYIKRDDLTGLGIGGNKIRKLEYLLGDA 65 (325)
T ss_dssp EEEEEGGGSCSTTCSTHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCcchhHHHHHHHHHHHH
Confidence 3467779888877777 89988877654
No 10
>d1d2zb_ a.77.1.2 (B:) Tube death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=2.70 E-value=1.3e+02 Score=23.37 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.1
Q ss_pred cceeeecCCcchhHhHHHHHHhCCCCCC
Q 020629 57 HMEVRYTDVDYLVFSDAASLMASGDSPY 84 (323)
Q Consensus 57 ~~elsyTdidy~rl~DG~~l~~~G~sPY 84 (323)
..+.+||..|.+++...+..+..|.||=
T Consensus 61 n~~~kY~~~hi~~ie~~a~~~~~~~S~t 88 (150)
T d1d2zb_ 61 KKGFKYTAQDVFQIDEAANRLPPDQSKS 88 (150)
T ss_dssp GGCBSSCHHHHHHHHHHHHHSCTTCCHH
T ss_pred CCCccccHHHHHHHHHHHhhccCCCChH
Confidence 4577899988888888888888999873
Done!