BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020630
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 145/326 (44%), Gaps = 35/326 (10%)
Query: 1 MPQETQPETPPNYWGYMPEEEYYTSQGVRNGKEYFETPNGKLFTQSFLPLDQKVKATVYM 60
MP+E+ P P Y + G +Y LF + + P KA +++
Sbjct: 18 MPEESSPRRTPQSIPYQDLPHLVNADG-----QY-------LFCRYWKPTGTP-KALIFV 64
Query: 61 THGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120
+HG G +G ++++ VFA D +GHG+S+G R + D L
Sbjct: 65 SHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDS 123
Query: 121 VRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI-PENMKPSK--- 176
++ + Y LP FL G SMGGA +L + P + G++ +PL + PE+ K
Sbjct: 124 MQ--KDYPGLPVFLLGHSMGGAIAILTAAE-RPGHFAGMVLISPLVLANPESATTFKVLA 180
Query: 177 ---LHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREI 233
L+L + L G D+ + + NK ++ + S+P +V ++
Sbjct: 181 AKVLNLVLPNLSLGPIDS-SVLSRNK---------TEVDIYNSDPLICRAGLKVCFGIQL 230
Query: 234 ARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQ 293
++ K+TVPFL + G+AD + + LL E A S DK++KIY+G YH L +
Sbjct: 231 LNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHK 290
Query: 294 GEPDENANLVLKDMREWIDERVERCG 319
P E N V ++ W+ +R G
Sbjct: 291 ELP-EVTNSVFHEINMWVSQRTATAG 315
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 144/320 (45%), Gaps = 23/320 (7%)
Query: 1 MPQETQPETPPNYWGYMPEEEYYTSQGVRNGKEYFETPNGKLFTQSFLPLDQKVKATVYM 60
MP+E+ P P Y + G +Y LF + + P KA +++
Sbjct: 1 MPEESSPRRTPQSIPYQDLPHLVNADG-----QY-------LFCRYWAPTGTP-KALIFV 47
Query: 61 THGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120
+HG G +G ++++ VFA D +GHG+S+G R + D L
Sbjct: 48 SHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDS 106
Query: 121 VRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI-PENMKPSKLHL 179
++ + Y LP FL G SMGGA +L + P + G++ +PL + PE+ K+
Sbjct: 107 MQ--KDYPGLPVFLLGHSMGGAIAILTAAE-RPGHFAGMVLISPLVLANPESATTFKV-- 161
Query: 180 FMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQY 239
+L + ++ P + V ++ ++ + S+P +V ++
Sbjct: 162 LAAKVLNSVLPNLSSGPIDSSVLS--RNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSR 219
Query: 240 IQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDEN 299
++ K+TVPFL + G+AD + + LL E A S DK++KIY+G YH L + P E
Sbjct: 220 VERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELP-EV 278
Query: 300 ANLVLKDMREWIDERVERCG 319
N V ++ W+ +R G
Sbjct: 279 TNSVFHEINMWVSQRTATAG 298
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 22/272 (8%)
Query: 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS 114
KA ++++HG G +G ++++ VFA D +GHG+S+G R + D
Sbjct: 60 KALIFVSHGAGEHSG-RYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDV 118
Query: 115 LSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI-PENMK 173
L ++ + Y LP FL G SMGGA +L + P + G++ +PL + PE+
Sbjct: 119 LQHVDSMQ--KDYPGLPVFLLGHSMGGAIAILTAAE-RPGHFAGMVLISPLVLANPESAT 175
Query: 174 PSK------LHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRV 227
K L+L + L G D+ + + NK ++ + S+P +V
Sbjct: 176 TFKVLAAKVLNLVLPNLSLGPIDS-SVLSRNKT---------EVDIYNSDPLICRAGLKV 225
Query: 228 GTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGM 287
++ ++ K+TVPFL + G+AD + + LL E A S DK++KIY+G
Sbjct: 226 CFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGA 285
Query: 288 YHSLIQGEPDENANLVLKDMREWIDERVERCG 319
YH L + P E N V ++ W+ +R G
Sbjct: 286 YHVLHKELP-EVTNSVFHEINMWVSQRTATAG 316
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 127/273 (46%), Gaps = 24/273 (8%)
Query: 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS 114
KA ++++HG G +G ++++ VFA D +GHG+S+G R + D
Sbjct: 59 KALIFVSHGAGEHSG-RYEELARXLXGLDLLVFAHDHVGHGQSEGERXVVSDFHVFVRDV 117
Query: 115 LSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI-PENM 172
L +HV + Y LP FL G S GGA +L + P + G + +PL + PE+
Sbjct: 118 L---QHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAE-RPGHFAGXVLISPLVLANPESA 173
Query: 173 KPSK------LHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPR 226
K L+L + L G D+ + + NK ++ + S+P +
Sbjct: 174 TTFKVLAAKVLNLVLPNLSLGPIDS-SVLSRNKT---------EVDIYNSDPLICRAGLK 223
Query: 227 VGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDG 286
V ++ ++ K+TVPFL + G+AD + + LL E A S DK++KIY+G
Sbjct: 224 VCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLXELAKSQDKTLKIYEG 283
Query: 287 MYHSLIQGEPDENANLVLKDMREWIDERVERCG 319
YH L + P E N V ++ W+ +R G
Sbjct: 284 AYHVLHKELP-EVTNSVFHEINXWVSQRTATAG 315
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAA-SSL 115
V HG + G +Q++ + A GY V A DL GHGRS +E V + SSL
Sbjct: 28 VVLCIHGI-LEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSS-------HLEMVTSYSSL 79
Query: 116 SFFKHV-RHSEPYRDLPAFLFGESMGG 141
+F + R + D P L G SMG
Sbjct: 80 TFLAQIDRVIQELPDQPLLLVGHSMGA 106
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 107/276 (38%), Gaps = 59/276 (21%)
Query: 58 VYMTHGY--GSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLG-DMEKVAASS 114
+ +HG+ +D+ W Q I + A GY V A D GHGRS + + G DM+ A
Sbjct: 22 IVFSHGWPLNADS-WESQMIFL--AAQGYRVIAHDRRGHGRSS--QPWSGNDMDTYADDL 76
Query: 115 LSFFKHVRHSEPYRDLPAFLFGESMGGA--ATMLMYFQSEPNTWTGLIFSAPLFVIPENM 172
+H+ RD A LFG S GG A + + GLI + P ++
Sbjct: 77 AQLIEHL----DLRD--AVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEA 130
Query: 173 KPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKL-KVIASNPRRYTGKPRVGTMR 231
P L + ++ + + ++ D +L K +AS P + G + G
Sbjct: 131 NPGGLPMEVF---------------DGIRQASLADRSQLYKDLASGP--FFGFNQPGAKS 173
Query: 232 EIARVCQY-----------------------IQDNFSKVTVPFLTVHGTADGVTCPTSSK 268
V + ++ K+ VP L VHG AD V P +
Sbjct: 174 SAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDADQV-VPIEAS 232
Query: 269 LLYEKASSADKSIKIYDGMYHSLIQGEPDE-NANLV 303
+ A ++KIY G H L D+ NA+L+
Sbjct: 233 GIASAALVKGSTLKIYSGAPHGLTDTHKDQLNADLL 268
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 83 GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGA 142
G A AD+ GHG+SDG + + K + L+ + + + D+ ++ G S GG
Sbjct: 56 GVATLRADMYGHGKSDG-KFEDHTLFKWLTNILAVVDYAKKLDFVTDI--YMAGHSQGGL 112
Query: 143 ATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVG 202
+ ML E + LI +P +IPE + +L GL F
Sbjct: 113 SVMLAA-AMERDIIKALIPLSPAAMIPEIARTGEL----LGLKF---------------- 151
Query: 203 KAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVT 262
DPE I + G+ G +A+ + ++D K T P L VHG D
Sbjct: 152 ----DPEN---IPDELDAWDGRKLKGNYVRVAQTIR-VEDFVDKYTKPVLIVHGDQDEAV 203
Query: 263 CPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVER 317
P + + + K K + I G H D + LV + ++E++ E++ +
Sbjct: 204 -PYEASVAFSKQYKNCKLVTI-PGDTHCY-----DHHLELVTEAVKEFMLEQIAK 251
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 32/235 (13%)
Query: 58 VYMTHGY-GSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAAS--S 114
V ++HG+ GS F + +A GY V L GHG + +M AS +
Sbjct: 54 VLVSHGFTGSPQSMRF--LAEGFARAGYTVATPRLTGHGTTPA------EMAASTASDWT 105
Query: 115 LSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKP 174
+R E D+ F+ G SMGGA T+ Q P + G ++P N
Sbjct: 106 ADIVAAMRWLEERCDV-LFMTGLSMGGALTVWAAGQF-PERFAG--------IMPINAAL 155
Query: 175 SKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIA 234
+ L F D A +P +G IK E +K +A T P + + I
Sbjct: 156 RMESPDLAALAFN-PDAPAELPG---IGSDIKA-EGVKELAYP---VTPVPAIKHLITIG 207
Query: 235 RVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYH 289
V + + +V P L + D V P + +L+Y S +K + + YH
Sbjct: 208 AVAEML---LPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYH 259
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 32/235 (13%)
Query: 58 VYMTHGY-GSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAAS--S 114
V ++HG+ GS F + +A GY V L GHG + +M AS +
Sbjct: 52 VLVSHGFTGSPQSMRF--LAEGFARAGYTVATPRLTGHGTTPA------EMAASTASDWT 103
Query: 115 LSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKP 174
+R E D+ F+ G SMGGA T+ Q P + G ++P N
Sbjct: 104 ADIVAAMRWLEERCDV-LFMTGLSMGGALTVWAAGQF-PERFAG--------IMPINAAL 153
Query: 175 SKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIA 234
+ L F D A +P +G IK E +K +A T P + + I
Sbjct: 154 RMESPDLAALAFN-PDAPAELPG---IGSDIKA-EGVKELAYP---VTPVPAIKHLITIG 205
Query: 235 RVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYH 289
V + + +V P L + D V P + +L+Y S +K + + YH
Sbjct: 206 AVAEML---LPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYH 257
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 32 KEYFETPNGKLFTQSFLPLDQKVKATVYMTHGYG-SDTGWMFQKICISYATWGYAVFAAD 90
+E F NG Q D + ++ + HGY + W + +Y+ GY V+A D
Sbjct: 5 QEEFIDVNGTRVFQRKXVTDSN-RRSIALFHGYSFTSXDWDKADLFNNYSKIGYNVYAPD 63
Query: 91 LLGHGRSDGIRCY---LGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLM 147
G GRS Y GD++ A + K + + + G S GG +
Sbjct: 64 YPGFGRSASSEKYGIDRGDLKHAAEFIRDYLKANGVAR------SVIXGASXGGGXVIXT 117
Query: 148 YFQSEPNTWTGLIFSAPLFVIPENMK 173
Q P+ G+I AP +V E++K
Sbjct: 118 TLQY-PDIVDGIIAVAPAWV--ESLK 140
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 111/285 (38%), Gaps = 35/285 (12%)
Query: 41 KLFTQSFLPLDQKVKATVYMTHGYG-SDTGWMFQKICISYATWGYAVFAADLLGHGRSDG 99
++F + + P D KV ++ HG+ S W Q + + G+ V A D GHGRS
Sbjct: 15 EIFYKDWGPRDAKV---IHFHHGWPLSSDDWDAQ--LLFFVNKGFRVVAHDRRGHGRSS- 68
Query: 100 IRCYLG-DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATM-LMYFQSEPNTWT 157
+ + G DM+ A + + E A G S GG + + E N
Sbjct: 69 -QVWDGHDMDHYADDAAAVV------EKLGTHGAMHVGHSTGGGEVVRYIARHGERNVSK 121
Query: 158 GLIFSA--PLFVI----PENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKL 211
++ S+ PL V P S F + A + +P G +
Sbjct: 122 AVLISSVPPLMVKTSSNPNGTPKSVFDDFQAHVAANRAQFYLDVPAGPFYGYNRPGAKPS 181
Query: 212 KVIASNPRRYTGKPRVGTMR-EIARVCQYIQDNFSK----VTVPFLTVHGTADGVTCPTS 266
+ + N R + +G+ + + + + Q +F+ +T+P L +HG D V
Sbjct: 182 EGVIYNWWR---QGMMGSTKAQYDGIVAFSQTDFTNDLKGITIPVLVIHGDDDQVVPYAD 238
Query: 267 SKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWI 311
S +L K K I Y G H G P +A+ V D+ E++
Sbjct: 239 SGVLSAKLVKNGKLI-TYKGAPH----GIPTTHADKVNADLLEFL 278
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 115/299 (38%), Gaps = 46/299 (15%)
Query: 33 EYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYG-SDTGWMFQKICISYATWGYAVFAAD 90
Y T +G ++F + + P D V ++ HG+ S W Q + + GY V A D
Sbjct: 2 SYVTTKDGVQIFYKDWGPRDAPV---IHFHHGWPLSADDWDAQ--LLFFLAHGYRVVAHD 56
Query: 91 LLGHGRS----DG--IRCYLGDMEKVAAS-SLSFFKHVRHSEPYRDLPAFLFGESMGGAA 143
GHGRS DG + Y D+ V A + HV HS + GG
Sbjct: 57 RRGHGRSSQVWDGHDMDHYADDVAAVVAHLGIQGAVHVGHS-------------TGGGEV 103
Query: 144 TMLMYFQSEPNTWTGLIFSA--PLFVI----PENMKPSKLHLFMYGLLFGLADTWAAMPD 197
M E ++ +A PL V P + S F + A + +P
Sbjct: 104 VRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQAQVASNRAQFYRDVPA 163
Query: 198 NKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMR-EIARVCQYIQDNFSK----VTVPFL 252
G E + I N R + +G+ + + + Q +F++ + P L
Sbjct: 164 GPFYGYNRPGVEASEGIIGNWWR---QGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVL 220
Query: 253 TVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWI 311
+HG D + +S +L K + ++K Y G H G P +A+++ D+ +I
Sbjct: 221 VMHGDDDQIVPYENSGVLSAKLLP-NGALKTYKGYPH----GMPTTHADVINADLLAFI 274
>pdb|3FC3|A Chain A, Crystal Structure Of The Beta-Beta-Alpha-Me Type Ii
Restriction Endonuclease Hpy99i
pdb|3FC3|B Chain B, Crystal Structure Of The Beta-Beta-Alpha-Me Type Ii
Restriction Endonuclease Hpy99i
pdb|3GOX|A Chain A, Crystal Structure Of The Beta-Beta-Alpha-Me Type Ii
Restriction Endonuclease Hpy99i In The Absence Of Edta
pdb|3GOX|B Chain B, Crystal Structure Of The Beta-Beta-Alpha-Me Type Ii
Restriction Endonuclease Hpy99i In The Absence Of Edta
Length = 200
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 38 PNGKLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYAT 81
P G +FT V T + H + DTGW + IC S T
Sbjct: 133 PKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNT 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,714,606
Number of Sequences: 62578
Number of extensions: 460903
Number of successful extensions: 1107
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 15
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)