Query 020630
Match_columns 323
No_of_seqs 498 out of 1357
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 03:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1455 Lysophospholipase [Lip 100.0 1.1E-47 2.4E-52 282.0 27.0 307 7-314 4-312 (313)
2 PLN02298 hydrolase, alpha/beta 100.0 1.6E-44 3.4E-49 289.6 30.4 309 9-318 11-321 (330)
3 PLN02385 hydrolase; alpha/beta 100.0 8.2E-43 1.8E-47 281.0 29.3 290 26-316 57-347 (349)
4 PHA02857 monoglyceride lipase; 100.0 2.7E-37 5.9E-42 242.2 29.1 269 34-315 4-274 (276)
5 COG2267 PldB Lysophospholipase 100.0 2.5E-36 5.4E-41 234.4 26.4 282 29-316 8-296 (298)
6 PLN02652 hydrolase; alpha/beta 100.0 8.3E-36 1.8E-40 240.3 29.3 276 30-316 110-389 (395)
7 PRK10749 lysophospholipase L2; 100.0 5.5E-35 1.2E-39 233.5 29.0 277 30-314 30-329 (330)
8 PLN02824 hydrolase, alpha/beta 100.0 4.1E-35 8.9E-40 231.8 19.5 255 37-313 14-293 (294)
9 TIGR02240 PHA_depoly_arom poly 100.0 3.3E-34 7.1E-39 224.4 22.7 258 37-316 8-268 (276)
10 PRK00870 haloalkane dehalogena 100.0 5E-34 1.1E-38 226.2 23.1 253 41-314 35-301 (302)
11 PRK03592 haloalkane dehalogena 100.0 2.5E-33 5.4E-38 221.7 23.4 258 37-315 13-290 (295)
12 PLN02965 Probable pheophorbida 100.0 7.4E-34 1.6E-38 219.7 19.1 240 55-313 3-252 (255)
13 PLN03087 BODYGUARD 1 domain co 100.0 2.6E-33 5.6E-38 228.5 22.7 264 34-313 179-478 (481)
14 KOG4178 Soluble epoxide hydrol 100.0 5.6E-33 1.2E-37 208.2 22.4 265 30-314 21-320 (322)
15 TIGR01607 PST-A Plasmodium sub 100.0 7.2E-33 1.6E-37 220.4 24.1 268 35-312 2-331 (332)
16 PRK03204 haloalkane dehalogena 100.0 4.7E-33 1E-37 218.0 22.3 256 28-311 12-285 (286)
17 PRK10673 acyl-CoA esterase; Pr 100.0 8.1E-33 1.8E-37 214.7 20.6 253 41-313 2-254 (255)
18 PLN02679 hydrolase, alpha/beta 100.0 2.6E-32 5.5E-37 220.2 21.8 262 34-313 65-356 (360)
19 TIGR03611 RutD pyrimidine util 100.0 5.4E-32 1.2E-36 210.7 19.5 248 42-312 1-256 (257)
20 TIGR03056 bchO_mg_che_rel puta 100.0 1.8E-31 3.9E-36 210.1 22.3 257 34-312 9-278 (278)
21 PLN03084 alpha/beta hydrolase 100.0 6E-31 1.3E-35 210.9 24.2 257 33-312 107-382 (383)
22 PRK10349 carboxylesterase BioH 100.0 4E-32 8.7E-37 210.6 16.2 239 42-312 4-254 (256)
23 TIGR03343 biphenyl_bphD 2-hydr 100.0 1.3E-31 2.7E-36 211.2 18.5 248 41-312 21-281 (282)
24 PRK06489 hypothetical protein; 100.0 6E-31 1.3E-35 212.8 21.3 260 38-315 47-358 (360)
25 PLN02578 hydrolase 100.0 1.4E-30 2.9E-35 210.1 21.8 254 34-312 69-353 (354)
26 COG1647 Esterase/lipase [Gener 100.0 8.1E-31 1.8E-35 183.8 16.9 228 55-312 15-242 (243)
27 KOG4409 Predicted hydrolase/ac 100.0 9.3E-31 2E-35 196.8 17.7 276 23-313 58-363 (365)
28 PRK13604 luxD acyl transferase 100.0 1.5E-29 3.2E-34 192.5 24.3 230 30-292 9-246 (307)
29 PRK07581 hypothetical protein; 100.0 8.4E-31 1.8E-35 211.0 18.2 260 37-316 22-338 (339)
30 TIGR01250 pro_imino_pep_2 prol 100.0 3.7E-30 8E-35 203.7 20.4 255 37-312 8-288 (288)
31 PLN02511 hydrolase 100.0 8.4E-30 1.8E-34 206.8 21.4 284 26-318 67-369 (388)
32 TIGR02427 protocat_pcaD 3-oxoa 100.0 9.6E-31 2.1E-35 202.9 15.4 246 41-311 1-250 (251)
33 PRK08775 homoserine O-acetyltr 100.0 2.8E-30 6E-35 207.7 18.0 258 37-315 42-340 (343)
34 PLN02211 methyl indole-3-aceta 100.0 3.3E-30 7.2E-35 200.0 17.1 250 38-311 4-267 (273)
35 PRK11126 2-succinyl-6-hydroxy- 100.0 2E-30 4.3E-35 199.7 15.6 230 55-313 2-241 (242)
36 TIGR01738 bioH putative pimelo 100.0 3.9E-30 8.4E-35 198.8 17.0 234 55-311 4-245 (245)
37 TIGR01392 homoserO_Ac_trn homo 100.0 5.9E-30 1.3E-34 206.5 15.6 261 37-312 12-351 (351)
38 PRK00175 metX homoserine O-ace 100.0 2.3E-29 4.9E-34 204.4 18.9 264 39-316 31-376 (379)
39 TIGR01249 pro_imino_pep_1 prol 100.0 5.1E-29 1.1E-33 197.5 20.3 246 31-292 5-290 (306)
40 PF12697 Abhydrolase_6: Alpha/ 100.0 1.3E-30 2.8E-35 199.1 10.3 220 58-298 1-224 (228)
41 KOG1454 Predicted hydrolase/ac 100.0 5.2E-29 1.1E-33 195.4 18.8 270 31-314 26-324 (326)
42 TIGR03695 menH_SHCHC 2-succiny 100.0 2.7E-29 5.8E-34 194.7 16.3 233 55-311 1-250 (251)
43 PRK05077 frsA fermentation/res 100.0 7.4E-28 1.6E-32 196.1 23.9 247 26-315 164-413 (414)
44 PLN02894 hydrolase, alpha/beta 100.0 4.1E-28 8.9E-33 197.7 20.8 260 41-313 93-388 (402)
45 PRK10985 putative hydrolase; P 100.0 5.6E-28 1.2E-32 192.6 19.3 281 26-315 27-321 (324)
46 PRK14875 acetoin dehydrogenase 100.0 2.4E-28 5.3E-33 199.9 14.9 244 39-313 117-370 (371)
47 TIGR03100 hydr1_PEP hydrolase, 100.0 3.6E-26 7.7E-31 177.7 22.5 256 33-312 5-273 (274)
48 PLN02980 2-oxoglutarate decarb 100.0 3.1E-27 6.7E-32 220.1 18.9 245 54-319 1370-1644(1655)
49 KOG2382 Predicted alpha/beta h 99.9 2.7E-26 5.9E-31 172.6 17.4 259 41-314 37-313 (315)
50 PRK10566 esterase; Provisional 99.9 3.3E-25 7.2E-30 171.2 21.9 210 53-314 25-248 (249)
51 PRK05855 short chain dehydroge 99.9 1.2E-25 2.5E-30 195.0 20.7 263 33-314 5-292 (582)
52 KOG4391 Predicted alpha/beta h 99.9 6.9E-26 1.5E-30 158.3 14.2 237 22-316 46-284 (300)
53 PLN02872 triacylglycerol lipas 99.9 1.5E-25 3.3E-30 180.2 17.1 287 21-316 35-391 (395)
54 TIGR01836 PHA_synth_III_C poly 99.9 2.5E-25 5.5E-30 179.4 18.5 273 31-313 37-349 (350)
55 PRK06765 homoserine O-acetyltr 99.9 3.8E-25 8.3E-30 177.9 16.5 262 41-313 42-387 (389)
56 KOG1552 Predicted alpha/beta h 99.9 1E-24 2.2E-29 158.2 16.9 218 30-316 35-254 (258)
57 COG0429 Predicted hydrolase of 99.9 4.5E-24 9.8E-29 160.2 19.2 287 24-316 43-342 (345)
58 KOG2984 Predicted hydrolase [G 99.9 9.8E-25 2.1E-29 150.8 11.2 233 38-313 28-275 (277)
59 COG1506 DAP2 Dipeptidyl aminop 99.9 1.8E-23 4E-28 179.3 17.6 250 25-317 360-619 (620)
60 TIGR01838 PHA_synth_I poly(R)- 99.9 4E-23 8.7E-28 170.7 18.1 268 21-298 153-463 (532)
61 PF12695 Abhydrolase_5: Alpha/ 99.9 2E-23 4.4E-28 147.6 14.2 145 57-290 1-145 (145)
62 PRK11071 esterase YqiA; Provis 99.9 9.2E-23 2E-27 148.9 17.6 183 56-312 2-189 (190)
63 KOG1838 Alpha/beta hydrolase [ 99.9 4.8E-22 1E-26 155.0 22.1 283 24-314 87-388 (409)
64 KOG2564 Predicted acetyltransf 99.9 1.5E-23 3.3E-28 152.4 11.7 118 41-165 61-181 (343)
65 TIGR03101 hydr2_PEP hydrolase, 99.9 9.1E-23 2E-27 155.0 16.5 132 33-169 3-137 (266)
66 PRK11460 putative hydrolase; P 99.9 6.2E-22 1.4E-26 149.6 19.8 181 53-315 14-209 (232)
67 PF00326 Peptidase_S9: Prolyl 99.9 3.1E-22 6.6E-27 150.5 17.3 204 71-317 2-212 (213)
68 PF01738 DLH: Dienelactone hyd 99.9 4.9E-22 1.1E-26 149.8 16.7 201 43-315 2-218 (218)
69 KOG4667 Predicted esterase [Li 99.9 6.1E-22 1.3E-26 138.5 13.6 243 31-314 11-258 (269)
70 PRK07868 acyl-CoA synthetase; 99.9 9.9E-22 2.1E-26 177.9 18.8 273 30-317 37-364 (994)
71 COG0412 Dienelactone hydrolase 99.9 1.6E-20 3.5E-25 141.0 22.2 213 31-316 3-235 (236)
72 PF00561 Abhydrolase_1: alpha/ 99.9 1.3E-23 2.9E-28 160.7 4.8 202 84-298 1-223 (230)
73 TIGR02821 fghA_ester_D S-formy 99.9 4.3E-20 9.4E-25 143.8 24.3 219 41-314 26-274 (275)
74 PF06500 DUF1100: Alpha/beta h 99.9 1.6E-21 3.4E-26 153.4 13.2 246 26-315 161-410 (411)
75 PF05448 AXE1: Acetyl xylan es 99.9 9.7E-21 2.1E-25 148.2 16.3 247 26-314 52-320 (320)
76 COG2945 Predicted hydrolase of 99.9 3.7E-20 8.1E-25 127.6 15.9 197 30-312 4-205 (210)
77 PLN00021 chlorophyllase 99.9 7.9E-20 1.7E-24 143.0 19.7 207 41-316 38-285 (313)
78 PLN02442 S-formylglutathione h 99.9 4.5E-19 9.7E-24 138.3 23.3 208 38-292 27-264 (283)
79 TIGR01840 esterase_phb esteras 99.9 5.5E-20 1.2E-24 137.8 16.5 120 45-166 2-130 (212)
80 COG0596 MhpC Predicted hydrola 99.8 4.3E-19 9.4E-24 139.1 18.6 247 41-310 11-278 (282)
81 PF02230 Abhydrolase_2: Phosph 99.8 4.5E-19 9.8E-24 133.2 17.3 185 53-315 12-216 (216)
82 PRK10162 acetyl esterase; Prov 99.8 3E-18 6.5E-23 136.0 22.7 242 30-316 57-317 (318)
83 PF06342 DUF1057: Alpha/beta h 99.8 5.7E-19 1.2E-23 130.2 15.4 113 47-169 28-140 (297)
84 TIGR00976 /NonD putative hydro 99.8 2.6E-19 5.7E-24 152.5 15.3 131 35-169 1-135 (550)
85 PRK10115 protease 2; Provision 99.8 2.2E-18 4.7E-23 149.1 20.8 255 27-320 413-681 (686)
86 PF03096 Ndr: Ndr family; Int 99.8 5.3E-18 1.2E-22 126.9 17.5 263 33-313 2-278 (283)
87 COG3208 GrsT Predicted thioest 99.8 4.2E-18 9.1E-23 123.2 16.2 225 53-313 5-235 (244)
88 COG2021 MET2 Homoserine acetyl 99.8 5.7E-18 1.2E-22 129.9 16.1 258 41-313 37-367 (368)
89 TIGR01839 PHA_synth_II poly(R) 99.8 1.7E-17 3.6E-22 136.1 17.9 265 22-296 181-487 (560)
90 PF08538 DUF1749: Protein of u 99.8 9E-18 1.9E-22 127.0 14.7 253 41-312 19-303 (303)
91 KOG2931 Differentiation-relate 99.8 4.1E-17 8.9E-22 120.3 16.9 267 30-313 22-305 (326)
92 COG3458 Acetyl esterase (deace 99.8 2.6E-17 5.7E-22 119.8 15.0 244 26-314 52-317 (321)
93 COG4757 Predicted alpha/beta h 99.8 3.5E-17 7.5E-22 116.3 15.0 259 33-311 8-280 (281)
94 PF02273 Acyl_transf_2: Acyl t 99.8 6.1E-17 1.3E-21 116.2 15.7 231 32-292 4-239 (294)
95 PF12146 Hydrolase_4: Putative 99.8 4.5E-18 9.9E-23 103.9 8.3 78 40-119 1-79 (79)
96 PF02129 Peptidase_S15: X-Pro 99.8 3.4E-17 7.4E-22 127.5 15.3 128 39-170 1-140 (272)
97 COG0400 Predicted esterase [Ge 99.8 1.1E-16 2.4E-21 116.3 15.7 180 53-314 16-205 (207)
98 TIGR01849 PHB_depoly_PhaZ poly 99.7 1.8E-16 3.9E-21 126.4 16.1 246 55-313 102-405 (406)
99 KOG2624 Triglyceride lipase-ch 99.7 3.3E-16 7.2E-21 124.6 17.2 292 19-315 37-399 (403)
100 TIGR03230 lipo_lipase lipoprot 99.7 2E-16 4.4E-21 127.5 14.8 113 54-168 40-156 (442)
101 PF06821 Ser_hydrolase: Serine 99.7 3.2E-16 7E-21 111.5 14.2 153 58-292 1-155 (171)
102 cd00707 Pancreat_lipase_like P 99.7 1.5E-16 3.2E-21 123.1 10.5 124 39-168 23-149 (275)
103 KOG3043 Predicted hydrolase re 99.7 8.8E-16 1.9E-20 108.9 13.1 196 42-315 28-241 (242)
104 PF12740 Chlorophyllase2: Chlo 99.7 2.1E-14 4.5E-19 106.9 18.8 183 44-296 6-211 (259)
105 PF10230 DUF2305: Uncharacteri 99.7 3.6E-15 7.8E-20 114.6 14.6 115 55-171 2-127 (266)
106 COG0657 Aes Esterase/lipase [L 99.7 8.5E-14 1.8E-18 111.0 21.9 236 37-312 58-308 (312)
107 PF12715 Abhydrolase_7: Abhydr 99.7 6E-16 1.3E-20 120.1 9.1 140 24-165 82-259 (390)
108 PF05728 UPF0227: Uncharacteri 99.6 4.9E-14 1.1E-18 101.4 16.9 182 58-311 2-186 (187)
109 PF00975 Thioesterase: Thioest 99.6 2.8E-14 6E-19 108.9 16.4 102 56-167 1-105 (229)
110 KOG1515 Arylacetamide deacetyl 99.6 4.5E-13 9.8E-18 104.7 22.8 248 35-314 66-335 (336)
111 PRK05371 x-prolyl-dipeptidyl a 99.6 7.5E-15 1.6E-19 128.2 14.1 230 74-317 270-522 (767)
112 COG3571 Predicted hydrolase of 99.6 1.9E-13 4.1E-18 91.6 17.0 187 53-313 12-210 (213)
113 COG3243 PhaC Poly(3-hydroxyalk 99.6 6.3E-14 1.4E-18 109.4 15.8 262 45-315 96-400 (445)
114 PF07859 Abhydrolase_3: alpha/ 99.6 1.1E-14 2.4E-19 109.5 11.5 102 58-168 1-112 (211)
115 TIGR03502 lipase_Pla1_cef extr 99.6 1.6E-14 3.4E-19 124.0 13.0 117 33-150 420-575 (792)
116 PF10503 Esterase_phd: Esteras 99.6 1.5E-13 3.3E-18 101.2 15.7 123 42-166 1-132 (220)
117 KOG4627 Kynurenine formamidase 99.6 5.7E-14 1.2E-18 98.2 10.1 212 39-310 53-267 (270)
118 KOG2100 Dipeptidyl aminopeptid 99.5 8.2E-13 1.8E-17 115.3 18.8 228 39-318 506-751 (755)
119 COG2936 Predicted acyl esteras 99.5 6.3E-13 1.4E-17 109.1 14.7 137 28-168 17-161 (563)
120 PF09752 DUF2048: Uncharacteri 99.5 5.9E-12 1.3E-16 97.2 19.0 236 53-310 90-345 (348)
121 PF03403 PAF-AH_p_II: Platelet 99.5 1.2E-12 2.6E-17 105.5 15.5 189 53-316 98-360 (379)
122 PF07224 Chlorophyllase: Chlor 99.5 1.2E-12 2.7E-17 95.5 14.0 120 41-169 32-160 (307)
123 PF08840 BAAT_C: BAAT / Acyl-C 99.5 5.3E-13 1.1E-17 99.3 12.2 179 112-316 4-212 (213)
124 COG3545 Predicted esterase of 99.5 3.6E-12 7.8E-17 87.6 14.4 176 56-313 3-178 (181)
125 KOG2281 Dipeptidyl aminopeptid 99.5 4.6E-12 9.9E-17 103.6 17.0 234 31-313 614-866 (867)
126 PF06028 DUF915: Alpha/beta hy 99.5 5.5E-12 1.2E-16 95.2 15.9 208 54-311 10-252 (255)
127 KOG2565 Predicted hydrolases o 99.5 3.1E-12 6.7E-17 97.9 14.5 120 36-163 129-261 (469)
128 COG4188 Predicted dienelactone 99.5 2E-12 4.3E-17 100.1 13.6 228 41-298 51-302 (365)
129 KOG2551 Phospholipase/carboxyh 99.5 8.9E-12 1.9E-16 88.9 15.4 180 54-316 4-222 (230)
130 PF06057 VirJ: Bacterial virul 99.4 3.1E-12 6.6E-17 90.1 11.3 103 56-167 3-108 (192)
131 COG4099 Predicted peptidase [G 99.4 5.9E-12 1.3E-16 93.5 13.2 123 37-166 168-304 (387)
132 PF03583 LIP: Secretory lipase 99.4 6.2E-12 1.3E-16 98.1 14.1 232 74-320 17-287 (290)
133 PTZ00472 serine carboxypeptida 99.4 6.3E-11 1.4E-15 98.4 20.7 136 31-168 48-218 (462)
134 PF03959 FSH1: Serine hydrolas 99.4 6.6E-12 1.4E-16 93.7 9.8 166 54-292 3-203 (212)
135 PRK10252 entF enterobactin syn 99.3 8.1E-11 1.8E-15 111.8 18.9 101 55-166 1068-1171(1296)
136 PF07819 PGAP1: PGAP1-like pro 99.3 4E-11 8.8E-16 89.8 13.5 110 54-169 3-126 (225)
137 KOG3975 Uncharacterized conser 99.3 1.3E-10 2.9E-15 84.2 15.3 242 53-310 27-299 (301)
138 COG3319 Thioesterase domains o 99.3 3.8E-10 8.3E-15 85.0 18.1 101 56-167 1-104 (257)
139 KOG2112 Lysophospholipase [Lip 99.3 1.8E-10 3.9E-15 81.9 14.6 182 55-313 3-203 (206)
140 PRK04940 hypothetical protein; 99.3 1.1E-09 2.3E-14 77.3 16.2 173 58-312 2-178 (180)
141 COG3509 LpqC Poly(3-hydroxybut 99.2 4E-10 8.6E-15 84.4 12.4 126 38-166 42-179 (312)
142 KOG3847 Phospholipase A2 (plat 99.2 4.5E-10 9.7E-15 84.3 12.0 110 53-165 116-274 (399)
143 KOG3253 Predicted alpha/beta h 99.2 7.7E-10 1.7E-14 90.3 13.6 187 55-315 176-375 (784)
144 PF12048 DUF3530: Protein of u 99.2 2.1E-08 4.5E-13 79.0 21.5 208 32-314 64-309 (310)
145 PRK10439 enterobactin/ferric e 99.2 3.1E-08 6.8E-13 81.2 22.8 122 41-166 193-323 (411)
146 PF01674 Lipase_2: Lipase (cla 99.2 3.6E-11 7.8E-16 88.6 4.3 91 56-150 2-95 (219)
147 PF00151 Lipase: Lipase; Inte 99.2 8.8E-11 1.9E-15 92.8 6.7 116 53-170 69-191 (331)
148 KOG1553 Predicted alpha/beta h 99.1 4.8E-10 1E-14 85.4 9.2 129 31-168 215-347 (517)
149 PLN02733 phosphatidylcholine-s 99.1 6.2E-10 1.3E-14 91.1 9.4 95 69-169 107-204 (440)
150 PF05677 DUF818: Chlamydia CHL 99.1 3.8E-09 8.1E-14 81.1 12.9 116 31-151 113-236 (365)
151 COG1505 Serine proteases of th 99.1 1.5E-09 3.3E-14 88.8 11.5 248 24-315 388-647 (648)
152 COG4814 Uncharacterized protei 99.1 3.4E-08 7.4E-13 72.3 16.9 107 56-167 46-177 (288)
153 PF05990 DUF900: Alpha/beta hy 99.1 1.6E-09 3.6E-14 81.7 10.4 112 53-167 16-138 (233)
154 KOG2237 Predicted serine prote 99.0 9.6E-09 2.1E-13 84.8 13.5 144 23-167 434-585 (712)
155 PF00450 Peptidase_S10: Serine 99.0 3.4E-08 7.3E-13 82.5 17.1 135 32-168 13-183 (415)
156 KOG3101 Esterase D [General fu 99.0 1E-08 2.2E-13 72.7 11.5 124 41-167 27-177 (283)
157 PF11339 DUF3141: Protein of u 99.0 3.8E-08 8.2E-13 79.7 15.9 89 73-170 91-179 (581)
158 KOG4840 Predicted hydrolases o 99.0 2E-08 4.3E-13 71.8 12.1 104 55-169 36-147 (299)
159 COG1770 PtrB Protease II [Amin 99.0 8.1E-08 1.8E-12 80.0 16.5 144 25-169 414-565 (682)
160 smart00824 PKS_TE Thioesterase 98.9 5.2E-08 1.1E-12 73.3 14.2 96 60-166 2-102 (212)
161 PF00756 Esterase: Putative es 98.9 1.1E-08 2.4E-13 79.2 10.8 128 41-169 7-153 (251)
162 COG3150 Predicted esterase [Ge 98.8 9.9E-07 2.1E-11 60.4 14.4 89 58-167 2-92 (191)
163 PF10340 DUF2424: Protein of u 98.8 9.7E-07 2.1E-11 70.1 16.6 109 53-169 120-238 (374)
164 PF11144 DUF2920: Protein of u 98.8 4.9E-06 1.1E-10 66.4 20.2 125 41-167 21-220 (403)
165 COG4782 Uncharacterized protei 98.8 9E-08 2E-12 74.2 10.0 112 53-167 114-235 (377)
166 cd00312 Esterase_lipase Estera 98.8 3.6E-08 7.8E-13 84.1 8.4 120 41-167 78-214 (493)
167 PF05705 DUF829: Eukaryotic pr 98.7 2.9E-07 6.2E-12 70.6 12.1 228 58-311 2-240 (240)
168 PF05057 DUF676: Putative seri 98.7 7.1E-08 1.5E-12 72.3 8.2 94 53-149 2-97 (217)
169 PLN02606 palmitoyl-protein thi 98.7 2.5E-06 5.5E-11 65.4 16.3 104 55-167 26-133 (306)
170 COG1073 Hydrolases of the alph 98.7 6.4E-07 1.4E-11 71.3 13.7 71 244-315 227-298 (299)
171 PF05577 Peptidase_S28: Serine 98.7 6.1E-07 1.3E-11 75.2 12.8 126 41-167 15-149 (434)
172 COG1075 LipA Predicted acetylt 98.6 1.5E-07 3.2E-12 75.4 7.7 104 55-169 59-167 (336)
173 PLN02209 serine carboxypeptida 98.6 3.2E-05 6.9E-10 64.1 21.1 134 33-168 42-214 (437)
174 COG0627 Predicted esterase [Ge 98.6 2.6E-06 5.6E-11 66.9 13.3 232 53-317 52-314 (316)
175 KOG1551 Uncharacterized conser 98.6 1.9E-06 4.2E-11 63.7 11.4 251 41-315 101-367 (371)
176 PLN03016 sinapoylglucose-malat 98.5 6.5E-05 1.4E-09 62.3 21.0 136 32-168 39-212 (433)
177 PLN02633 palmitoyl protein thi 98.5 5.9E-06 1.3E-10 63.5 13.2 104 55-166 25-131 (314)
178 KOG1282 Serine carboxypeptidas 98.5 6.1E-05 1.3E-09 62.0 19.8 139 29-168 43-215 (454)
179 PF02089 Palm_thioest: Palmito 98.5 5.9E-07 1.3E-11 68.2 7.5 107 55-166 5-116 (279)
180 PF04301 DUF452: Protein of un 98.4 3.5E-06 7.6E-11 61.7 9.8 79 55-166 11-90 (213)
181 KOG2541 Palmitoyl protein thio 98.4 1E-05 2.3E-10 60.2 12.0 103 56-166 24-128 (296)
182 COG2272 PnbA Carboxylesterase 98.4 1.8E-06 3.9E-11 70.1 8.7 121 41-167 79-218 (491)
183 PF00135 COesterase: Carboxyle 98.4 2.2E-06 4.7E-11 74.3 9.8 124 41-167 108-246 (535)
184 PF10142 PhoPQ_related: PhoPQ- 98.4 1.8E-05 3.8E-10 63.4 13.6 155 126-317 168-323 (367)
185 PF08386 Abhydrolase_4: TAP-li 98.3 1.5E-06 3.3E-11 56.5 5.4 70 248-323 34-103 (103)
186 PF07082 DUF1350: Protein of u 98.3 1.3E-05 2.8E-10 59.5 10.5 104 53-163 15-122 (250)
187 KOG3724 Negative regulator of 98.3 1.8E-05 3.9E-10 67.7 12.2 111 54-170 88-224 (973)
188 COG4553 DepA Poly-beta-hydroxy 98.3 5.4E-05 1.2E-09 57.2 13.2 119 43-171 91-214 (415)
189 PF02450 LCAT: Lecithin:choles 98.2 8.4E-06 1.8E-10 66.9 9.2 87 71-169 66-163 (389)
190 COG3946 VirJ Type IV secretory 98.2 0.00014 3E-09 57.7 15.2 104 41-153 246-349 (456)
191 KOG2183 Prolylcarboxypeptidase 98.1 3.9E-05 8.4E-10 60.9 10.6 105 55-163 80-199 (492)
192 PLN02213 sinapoylglucose-malat 98.1 0.00044 9.6E-09 55.4 16.9 85 84-168 2-98 (319)
193 KOG3967 Uncharacterized conser 98.1 9.8E-05 2.1E-09 53.1 11.1 119 53-176 99-237 (297)
194 COG2819 Predicted hydrolase of 98.1 0.0002 4.4E-09 54.0 13.2 59 108-167 114-173 (264)
195 COG2382 Fes Enterochelin ester 97.9 0.00089 1.9E-08 51.4 14.2 123 41-167 81-213 (299)
196 PF04083 Abhydro_lipase: Parti 97.8 4.3E-05 9.3E-10 44.1 4.5 50 22-72 4-59 (63)
197 KOG2182 Hydrolytic enzymes of 97.8 0.00039 8.4E-09 56.9 11.1 113 54-167 85-208 (514)
198 PLN02517 phosphatidylcholine-s 97.8 3.6E-05 7.8E-10 64.5 5.4 94 70-167 156-264 (642)
199 cd00741 Lipase Lipase. Lipase 97.8 8.9E-05 1.9E-09 52.5 6.7 57 107-166 7-67 (153)
200 PF06259 Abhydrolase_8: Alpha/ 97.7 0.003 6.6E-08 45.3 13.0 119 45-166 10-144 (177)
201 cd00519 Lipase_3 Lipase (class 97.6 0.00068 1.5E-08 51.7 9.1 59 106-166 106-168 (229)
202 KOG2369 Lecithin:cholesterol a 97.6 0.00026 5.5E-09 57.6 6.8 76 70-153 124-205 (473)
203 KOG2521 Uncharacterized conser 97.5 0.0047 1E-07 49.2 13.0 71 245-318 222-294 (350)
204 PF11187 DUF2974: Protein of u 97.5 0.0057 1.2E-07 46.0 12.5 48 115-166 72-123 (224)
205 PF01083 Cutinase: Cutinase; 97.4 0.0011 2.5E-08 48.0 7.3 77 84-166 40-122 (179)
206 PF01764 Lipase_3: Lipase (cla 97.3 0.00064 1.4E-08 47.3 5.6 40 109-150 45-84 (140)
207 COG2939 Carboxypeptidase C (ca 97.3 0.0015 3.3E-08 53.8 8.1 120 44-166 89-236 (498)
208 PF05576 Peptidase_S37: PS-10 97.2 0.002 4.3E-08 51.8 7.1 106 53-165 61-168 (448)
209 KOG1516 Carboxylesterase and r 97.1 0.0035 7.5E-08 54.7 9.4 121 41-166 96-232 (545)
210 COG4947 Uncharacterized protei 97.0 0.0038 8.3E-08 43.5 6.5 117 41-167 16-137 (227)
211 KOG4388 Hormone-sensitive lipa 97.0 0.0031 6.8E-08 52.8 7.0 120 39-169 380-511 (880)
212 COG2830 Uncharacterized protei 97.0 0.0049 1.1E-07 42.4 6.6 78 55-165 11-89 (214)
213 PLN02454 triacylglycerol lipas 96.9 0.0054 1.2E-07 50.0 8.0 58 109-166 207-271 (414)
214 PF07519 Tannase: Tannase and 96.7 0.033 7.1E-07 47.3 11.4 120 41-168 16-152 (474)
215 PF11288 DUF3089: Protein of u 96.5 0.0065 1.4E-07 44.6 5.1 74 76-151 39-116 (207)
216 PLN02310 triacylglycerol lipas 96.5 0.011 2.3E-07 48.2 6.7 39 110-150 191-229 (405)
217 KOG1283 Serine carboxypeptidas 96.5 0.08 1.7E-06 41.3 10.8 133 36-170 9-170 (414)
218 PF06850 PHB_depo_C: PHB de-po 96.5 0.0056 1.2E-07 43.9 4.4 65 248-313 134-201 (202)
219 COG4287 PqaA PhoPQ-activated p 96.4 0.014 3.1E-07 46.2 6.6 63 244-314 325-387 (507)
220 PLN02571 triacylglycerol lipas 96.4 0.0082 1.8E-07 49.0 5.5 39 112-150 208-246 (413)
221 PLN02408 phospholipase A1 96.3 0.0098 2.1E-07 47.8 5.2 40 111-150 181-220 (365)
222 PF06441 EHN: Epoxide hydrolas 96.2 0.015 3.3E-07 38.2 5.2 38 31-69 68-106 (112)
223 PLN02162 triacylglycerol lipas 96.2 0.016 3.6E-07 47.8 6.2 34 114-149 264-297 (475)
224 PLN03037 lipase class 3 family 96.1 0.0096 2.1E-07 49.8 4.5 39 110-150 300-338 (525)
225 PLN02324 triacylglycerol lipas 96.1 0.015 3.2E-07 47.5 5.4 41 110-150 195-235 (415)
226 KOG1202 Animal-type fatty acid 96.0 0.038 8.2E-07 50.9 7.7 97 53-166 2121-2219(2376)
227 PLN02847 triacylglycerol lipas 95.9 0.028 6E-07 47.9 6.6 37 112-150 235-271 (633)
228 PLN00413 triacylglycerol lipas 95.9 0.016 3.4E-07 48.1 4.8 33 115-149 271-303 (479)
229 PLN02802 triacylglycerol lipas 95.8 0.019 4.1E-07 48.0 5.1 39 112-150 312-350 (509)
230 PLN02934 triacylglycerol lipas 95.7 0.017 3.7E-07 48.3 4.6 35 113-149 306-340 (515)
231 PLN02761 lipase class 3 family 95.4 0.034 7.4E-07 46.7 5.2 40 111-150 271-314 (527)
232 PLN02753 triacylglycerol lipas 95.4 0.037 8E-07 46.5 5.3 41 110-150 289-332 (531)
233 TIGR03712 acc_sec_asp2 accesso 95.3 1.6 3.4E-05 36.8 17.3 120 35-167 270-391 (511)
234 KOG4372 Predicted alpha/beta h 95.2 0.032 7E-07 45.0 4.3 87 53-148 78-168 (405)
235 COG5153 CVT17 Putative lipase 95.0 0.058 1.3E-06 41.3 5.0 52 109-165 257-308 (425)
236 KOG4540 Putative lipase essent 95.0 0.058 1.3E-06 41.3 5.0 52 109-165 257-308 (425)
237 PLN02719 triacylglycerol lipas 95.0 0.051 1.1E-06 45.6 5.1 41 110-150 275-318 (518)
238 PF08237 PE-PPE: PE-PPE domain 95.0 0.12 2.7E-06 39.0 6.8 64 83-150 2-68 (225)
239 PF05277 DUF726: Protein of un 94.2 0.19 4E-06 40.6 6.4 39 129-167 219-261 (345)
240 KOG4569 Predicted lipase [Lipi 94.2 0.083 1.8E-06 42.8 4.4 36 113-150 156-191 (336)
241 PF03283 PAE: Pectinacetyleste 93.5 2.2 4.9E-05 35.0 11.3 52 112-164 138-193 (361)
242 KOG2029 Uncharacterized conser 93.3 0.45 9.7E-06 40.8 7.1 57 109-165 505-571 (697)
243 PF07519 Tannase: Tannase and 90.9 0.59 1.3E-05 39.9 5.5 64 248-313 353-426 (474)
244 PF09949 DUF2183: Uncharacteri 89.9 3.7 8.1E-05 26.5 7.9 84 71-161 12-97 (100)
245 PF09994 DUF2235: Uncharacteri 88.4 5.5 0.00012 31.5 8.8 94 56-150 2-112 (277)
246 KOG4389 Acetylcholinesterase/B 86.7 2.7 5.7E-05 35.5 6.2 120 41-167 120-256 (601)
247 PRK12467 peptide synthase; Pro 86.7 8.8 0.00019 42.8 11.6 98 55-163 3692-3792(3956)
248 PF05576 Peptidase_S37: PS-10 83.7 1.7 3.7E-05 35.8 3.8 69 240-312 343-412 (448)
249 COG3673 Uncharacterized conser 81.7 12 0.00025 30.0 7.4 105 53-163 29-150 (423)
250 COG0529 CysC Adenylylsulfate k 81.6 18 0.00039 26.3 8.4 38 53-90 20-58 (197)
251 PRK02399 hypothetical protein; 79.3 32 0.0007 28.8 9.5 100 59-161 6-127 (406)
252 PF08484 Methyltransf_14: C-me 78.1 11 0.00025 26.8 6.1 53 107-164 50-102 (160)
253 cd03818 GT1_ExpC_like This fam 77.9 20 0.00043 30.1 8.6 38 58-98 2-39 (396)
254 PF06792 UPF0261: Uncharacteri 77.4 29 0.00064 29.0 8.8 101 57-161 3-125 (403)
255 cd03146 GAT1_Peptidase_E Type 76.8 22 0.00048 26.8 7.7 83 54-146 30-129 (212)
256 cd01714 ETF_beta The electron 76.0 20 0.00044 26.8 7.2 71 77-162 70-145 (202)
257 COG3340 PepE Peptidase E [Amin 74.7 16 0.00034 27.3 6.0 38 55-92 32-71 (224)
258 PF01583 APS_kinase: Adenylyls 73.9 25 0.00055 25.0 6.8 38 55-92 1-39 (156)
259 TIGR02069 cyanophycinase cyano 72.5 36 0.00077 26.5 8.0 40 53-92 26-66 (250)
260 PRK05282 (alpha)-aspartyl dipe 72.3 35 0.00077 26.2 7.7 38 55-92 31-70 (233)
261 KOG2385 Uncharacterized conser 70.5 23 0.00051 30.4 6.8 39 129-168 446-489 (633)
262 PF06309 Torsin: Torsin; Inte 70.0 7.6 0.00017 26.3 3.3 62 53-124 50-119 (127)
263 PF11713 Peptidase_C80: Peptid 69.6 3.9 8.4E-05 29.0 2.0 56 87-142 57-116 (157)
264 PF06833 MdcE: Malonate decarb 67.6 15 0.00033 27.9 4.8 60 84-149 66-128 (234)
265 PLN02748 tRNA dimethylallyltra 67.6 46 0.001 28.7 8.2 78 54-138 20-120 (468)
266 COG1087 GalE UDP-glucose 4-epi 66.9 14 0.00031 29.3 4.7 26 73-98 14-39 (329)
267 PF12242 Eno-Rase_NADH_b: NAD( 66.7 26 0.00057 21.2 5.1 45 107-151 16-61 (78)
268 TIGR02884 spore_pdaA delta-lac 66.6 8.6 0.00019 29.3 3.5 35 55-90 186-221 (224)
269 PRK14729 miaA tRNA delta(2)-is 66.0 60 0.0013 26.2 8.1 75 57-138 5-101 (300)
270 TIGR03707 PPK2_P_aer polyphosp 65.1 39 0.00085 25.9 6.7 71 55-143 30-102 (230)
271 cd05312 NAD_bind_1_malic_enz N 65.0 16 0.00034 28.8 4.7 83 57-148 26-124 (279)
272 COG4822 CbiK Cobalamin biosynt 64.9 20 0.00044 26.8 4.8 41 53-93 136-177 (265)
273 PF10605 3HBOH: 3HB-oligomer h 62.8 8 0.00017 33.8 2.9 38 132-169 287-324 (690)
274 TIGR03709 PPK2_rel_1 polyphosp 62.2 14 0.00031 28.9 4.0 70 55-142 55-126 (264)
275 PRK05579 bifunctional phosphop 62.0 90 0.002 26.4 8.8 75 55-137 116-196 (399)
276 PRK00091 miaA tRNA delta(2)-is 61.9 53 0.0012 26.5 7.2 74 55-135 3-99 (307)
277 PF14606 Lipase_GDSL_3: GDSL-l 61.7 27 0.00058 25.5 5.0 13 83-95 33-45 (178)
278 PF00698 Acyl_transf_1: Acyl t 61.2 8.2 0.00018 31.3 2.7 20 131-150 85-104 (318)
279 PF05724 TPMT: Thiopurine S-me 61.0 12 0.00025 28.4 3.3 31 56-92 38-68 (218)
280 TIGR02873 spore_ylxY probable 60.3 10 0.00023 29.8 3.0 34 56-90 231-264 (268)
281 TIGR02764 spore_ybaN_pdaB poly 60.0 7.9 0.00017 28.5 2.3 34 56-90 152-188 (191)
282 PF02230 Abhydrolase_2: Phosph 60.0 36 0.00077 25.6 5.9 58 55-120 155-214 (216)
283 COG1448 TyrB Aspartate/tyrosin 59.7 1E+02 0.0022 25.7 8.9 88 54-164 170-263 (396)
284 PRK05571 ribose-5-phosphate is 59.0 61 0.0013 22.8 6.9 76 72-164 15-90 (148)
285 COG1073 Hydrolases of the alph 58.7 0.58 1.3E-05 37.1 -4.3 107 41-152 32-154 (299)
286 PF10081 Abhydrolase_9: Alpha/ 58.0 21 0.00046 28.1 4.2 38 129-167 108-148 (289)
287 KOG1201 Hydroxysteroid 17-beta 57.8 48 0.001 26.4 6.1 39 55-96 37-75 (300)
288 PF02502 LacAB_rpiB: Ribose/Ga 57.6 60 0.0013 22.6 6.0 75 72-164 14-88 (140)
289 COG0324 MiaA tRNA delta(2)-iso 57.0 91 0.002 25.2 7.6 76 56-138 3-101 (308)
290 cd07225 Pat_PNPLA6_PNPLA7 Pata 57.0 16 0.00034 29.5 3.6 21 131-151 44-64 (306)
291 smart00827 PKS_AT Acyl transfe 56.6 13 0.00028 29.7 3.2 20 131-150 83-102 (298)
292 cd07198 Patatin Patatin-like p 56.5 18 0.0004 26.1 3.6 23 131-153 27-49 (172)
293 TIGR01118 lacA galactose-6-pho 56.4 66 0.0014 22.4 6.3 73 72-164 15-87 (141)
294 KOG1465 Translation initiation 55.6 54 0.0012 26.1 5.9 36 131-170 233-278 (353)
295 PRK10279 hypothetical protein; 55.4 16 0.00034 29.3 3.3 21 131-151 34-54 (300)
296 PF00326 Peptidase_S9: Prolyl 55.4 40 0.00087 25.2 5.5 43 54-96 143-187 (213)
297 cd07207 Pat_ExoU_VipD_like Exo 55.2 18 0.00039 26.6 3.5 22 131-152 28-49 (194)
298 TIGR03131 malonate_mdcH malona 54.7 15 0.00032 29.4 3.1 21 130-150 76-96 (295)
299 PRK13256 thiopurine S-methyltr 54.4 13 0.00028 28.3 2.6 29 58-92 46-74 (226)
300 PF13207 AAA_17: AAA domain; P 54.2 28 0.00061 23.0 4.1 31 58-91 1-32 (121)
301 TIGR00521 coaBC_dfp phosphopan 53.7 1.4E+02 0.0029 25.3 8.5 89 56-150 113-224 (390)
302 cd03145 GAT1_cyanophycinase Ty 53.5 83 0.0018 23.9 6.8 39 54-92 28-67 (217)
303 KOG3551 Syntrophins (type beta 53.3 14 0.00029 30.3 2.6 40 28-67 449-497 (506)
304 COG1709 Predicted transcriptio 52.9 90 0.002 23.6 6.4 65 18-89 157-226 (241)
305 PF03976 PPK2: Polyphosphate k 52.3 10 0.00022 28.9 1.8 38 55-92 30-68 (228)
306 PLN02840 tRNA dimethylallyltra 52.2 97 0.0021 26.4 7.4 31 104-138 89-119 (421)
307 COG1752 RssA Predicted esteras 52.1 19 0.00042 29.0 3.4 22 131-152 40-61 (306)
308 PF05673 DUF815: Protein of un 51.9 96 0.0021 24.1 6.7 32 59-90 55-87 (249)
309 TIGR00632 vsr DNA mismatch end 51.8 41 0.0009 22.5 4.3 15 75-89 99-113 (117)
310 COG3933 Transcriptional antite 51.8 1.2E+02 0.0026 25.9 7.7 75 55-148 109-183 (470)
311 TIGR00689 rpiB_lacA_lacB sugar 50.6 85 0.0019 22.0 6.9 75 72-164 13-87 (144)
312 PRK12724 flagellar biosynthesi 50.4 1.6E+02 0.0035 25.2 8.8 75 76-162 292-367 (432)
313 TIGR00128 fabD malonyl CoA-acy 50.2 18 0.00039 28.8 3.0 20 131-150 84-103 (290)
314 COG3946 VirJ Type IV secretory 50.2 58 0.0012 27.3 5.6 103 55-164 48-155 (456)
315 cd07212 Pat_PNPLA9 Patatin-lik 50.1 16 0.00034 29.6 2.6 19 133-151 35-53 (312)
316 PRK06171 sorbitol-6-phosphate 49.9 52 0.0011 25.6 5.5 33 58-93 11-43 (266)
317 cd03129 GAT1_Peptidase_E_like 49.8 1.1E+02 0.0024 23.0 7.2 38 55-92 29-66 (210)
318 cd07210 Pat_hypo_W_succinogene 49.8 28 0.0006 26.5 3.8 21 131-151 29-49 (221)
319 PRK06490 glutamine amidotransf 49.5 1.2E+02 0.0026 23.5 9.4 84 55-148 8-103 (239)
320 COG0796 MurI Glutamate racemas 49.3 61 0.0013 25.5 5.5 46 267-314 21-66 (269)
321 COG3727 Vsr DNA G:T-mismatch r 49.2 50 0.0011 22.5 4.3 15 75-89 100-114 (150)
322 TIGR01119 lacB galactose-6-pho 49.0 1E+02 0.0022 22.4 7.0 75 72-164 15-89 (171)
323 cd07227 Pat_Fungal_NTE1 Fungal 49.0 24 0.00052 27.8 3.4 20 132-151 40-59 (269)
324 PF00448 SRP54: SRP54-type pro 48.4 1.1E+02 0.0024 22.7 6.7 73 75-162 75-148 (196)
325 cd07208 Pat_hypo_Ecoli_yjju_li 48.0 31 0.00066 27.1 3.9 22 133-154 30-51 (266)
326 PF09370 TIM-br_sig_trns: TIM- 47.6 40 0.00087 26.3 4.2 83 75-165 162-249 (268)
327 PF02065 Melibiase: Melibiase; 46.7 82 0.0018 26.6 6.2 68 71-142 171-238 (394)
328 COG2240 PdxK Pyridoxal/pyridox 46.4 1.5E+02 0.0032 23.6 7.1 98 60-170 10-117 (281)
329 KOG1252 Cystathionine beta-syn 46.2 1.7E+02 0.0036 24.1 8.9 57 35-93 188-249 (362)
330 PHA02114 hypothetical protein 45.7 38 0.00082 21.5 3.2 34 56-90 83-116 (127)
331 KOG2941 Beta-1,4-mannosyltrans 45.2 32 0.00069 28.1 3.5 41 53-97 11-51 (444)
332 PRK08622 galactose-6-phosphate 44.1 1.2E+02 0.0027 22.0 6.9 75 72-164 15-89 (171)
333 PF03681 UPF0150: Uncharacteri 43.8 39 0.00084 18.1 2.8 34 81-120 11-44 (48)
334 TIGR00174 miaA tRNA isopenteny 43.7 91 0.002 24.9 5.8 30 105-138 68-97 (287)
335 TIGR01120 rpiB ribose 5-phosph 43.6 1.1E+02 0.0024 21.4 6.9 75 72-164 14-88 (143)
336 cd07209 Pat_hypo_Ecoli_Z1214_l 43.2 35 0.00075 25.8 3.4 22 131-152 27-48 (215)
337 COG0482 TrmU Predicted tRNA(5- 43.2 95 0.0021 25.7 5.9 61 55-123 4-64 (356)
338 COG1255 Uncharacterized protei 43.2 27 0.00059 23.2 2.3 22 71-92 24-45 (129)
339 PTZ00317 NADP-dependent malic 42.5 51 0.0011 29.0 4.6 83 57-147 298-399 (559)
340 cd07228 Pat_NTE_like_bacteria 42.4 42 0.00091 24.3 3.7 23 131-153 29-51 (175)
341 KOG3086 Predicted dioxygenase 42.3 72 0.0016 24.6 4.7 59 106-167 18-80 (296)
342 TIGR03127 RuMP_HxlB 6-phospho 42.3 56 0.0012 23.7 4.3 32 58-90 32-63 (179)
343 PF03205 MobB: Molybdopterin g 42.3 71 0.0015 22.2 4.6 41 58-98 2-43 (140)
344 PF05577 Peptidase_S28: Serine 42.0 52 0.0011 28.1 4.7 41 249-294 377-417 (434)
345 PRK08621 galactose-6-phosphate 42.0 1.2E+02 0.0026 21.2 6.1 73 72-164 15-87 (142)
346 COG0331 FabD (acyl-carrier-pro 41.9 38 0.00083 27.4 3.6 21 129-149 84-104 (310)
347 COG0031 CysK Cysteine synthase 41.8 1.9E+02 0.004 23.4 8.6 121 34-164 144-291 (300)
348 KOG1199 Short-chain alcohol de 41.6 1.4E+02 0.0029 21.7 6.0 85 55-146 8-98 (260)
349 PRK12615 galactose-6-phosphate 41.6 1.4E+02 0.003 21.8 6.7 75 72-164 15-89 (171)
350 PF09419 PGP_phosphatase: Mito 41.5 64 0.0014 23.3 4.3 53 79-140 36-88 (168)
351 cd07218 Pat_iPLA2 Calcium-inde 41.5 58 0.0012 25.3 4.4 20 133-152 33-52 (245)
352 KOG1200 Mitochondrial/plastidi 41.0 1.5E+02 0.0033 22.2 6.9 33 57-92 15-47 (256)
353 PRK13690 hypothetical protein; 41.0 77 0.0017 23.0 4.5 34 106-139 2-35 (184)
354 PRK13255 thiopurine S-methyltr 40.9 35 0.00075 25.9 3.1 15 77-91 53-67 (218)
355 PRK13529 malate dehydrogenase; 40.3 53 0.0011 29.0 4.3 82 57-147 296-400 (563)
356 COG0426 FpaA Uncharacterized f 40.2 2.3E+02 0.0049 24.0 7.6 74 56-154 249-331 (388)
357 cd07205 Pat_PNPLA6_PNPLA7_NTE1 40.1 49 0.0011 23.9 3.7 21 131-151 29-49 (175)
358 COG0541 Ffh Signal recognition 39.5 1.6E+02 0.0034 25.3 6.6 70 78-162 177-247 (451)
359 TIGR03840 TMPT_Se_Te thiopurin 39.3 36 0.00079 25.7 3.0 15 77-91 50-64 (213)
360 PRK01254 hypothetical protein; 39.2 98 0.0021 28.2 5.8 37 56-92 40-78 (707)
361 PF03853 YjeF_N: YjeF-related 39.1 44 0.00094 24.1 3.3 34 55-89 25-58 (169)
362 PRK09273 hypothetical protein; 39.1 1.7E+02 0.0037 22.1 7.0 78 71-164 18-95 (211)
363 cd07224 Pat_like Patatin-like 38.4 52 0.0011 25.3 3.8 21 132-152 31-51 (233)
364 PTZ00445 p36-lilke protein; Pr 38.0 1.1E+02 0.0024 23.2 5.1 66 71-140 30-102 (219)
365 PRK06523 short chain dehydroge 37.7 1E+02 0.0022 23.9 5.4 32 58-92 11-42 (260)
366 cd07204 Pat_PNPLA_like Patatin 37.6 62 0.0013 25.1 4.1 20 133-152 34-53 (243)
367 PRK14974 cell division protein 36.9 2.4E+02 0.0053 23.3 8.1 67 81-162 220-287 (336)
368 cd00842 MPP_ASMase acid sphing 36.8 1E+02 0.0023 24.6 5.4 28 106-137 194-221 (296)
369 PRK06731 flhF flagellar biosyn 36.6 2.2E+02 0.0047 22.6 8.5 65 83-162 154-219 (270)
370 PF06792 UPF0261: Uncharacteri 36.3 89 0.0019 26.3 4.9 43 54-97 183-225 (403)
371 cd07230 Pat_TGL4-5_like Triacy 36.2 44 0.00095 28.4 3.3 24 131-154 102-125 (421)
372 KOG0781 Signal recognition par 36.1 1.2E+02 0.0026 26.3 5.5 88 59-162 442-538 (587)
373 TIGR02816 pfaB_fam PfaB family 36.0 40 0.00086 29.7 3.0 22 130-151 265-286 (538)
374 TIGR03708 poly_P_AMP_trns poly 35.9 1.8E+02 0.004 25.5 6.8 70 55-142 39-110 (493)
375 PF11080 DUF2622: Protein of u 35.8 1.2E+02 0.0026 19.5 5.9 68 56-124 8-75 (96)
376 PF08497 Radical_SAM_N: Radica 35.7 1.7E+02 0.0037 23.4 6.0 37 56-92 17-55 (302)
377 PF00004 AAA: ATPase family as 35.7 1.3E+02 0.0029 19.9 5.8 54 59-123 1-55 (132)
378 PRK11613 folP dihydropteroate 35.6 2.3E+02 0.005 22.7 7.9 55 74-142 167-223 (282)
379 PF04084 ORC2: Origin recognit 35.6 2.5E+02 0.0054 23.1 7.9 15 129-143 136-150 (326)
380 KOG2805 tRNA (5-methylaminomet 35.5 1.3E+02 0.0028 24.4 5.3 65 54-124 5-69 (377)
381 COG1066 Sms Predicted ATP-depe 35.4 2.7E+02 0.0059 23.8 7.3 64 71-138 156-219 (456)
382 PF01118 Semialdhyde_dh: Semia 35.3 65 0.0014 21.6 3.5 31 131-163 1-32 (121)
383 PRK11460 putative hydrolase; P 35.1 1.9E+02 0.0041 22.1 6.4 42 55-96 148-191 (232)
384 PTZ00215 ribose 5-phosphate is 34.9 1.7E+02 0.0036 20.8 6.9 75 72-164 17-93 (151)
385 PF14253 AbiH: Bacteriophage a 34.5 38 0.00083 26.6 2.6 14 129-142 234-247 (270)
386 PRK02399 hypothetical protein; 34.4 99 0.0022 26.1 4.8 42 55-97 185-226 (406)
387 PRK00865 glutamate racemase; P 34.2 1.4E+02 0.0031 23.4 5.6 47 265-313 19-65 (261)
388 PF12641 Flavodoxin_3: Flavodo 34.1 1.8E+02 0.0038 20.9 5.8 60 248-313 39-98 (160)
389 PRK00652 lpxK tetraacyldisacch 33.6 1.2E+02 0.0026 24.9 5.2 27 71-98 67-93 (325)
390 TIGR01425 SRP54_euk signal rec 33.6 1.7E+02 0.0037 25.1 6.2 69 79-162 178-247 (429)
391 COG0698 RpiB Ribose 5-phosphat 33.5 1.8E+02 0.0038 20.7 7.2 75 73-164 16-90 (151)
392 COG1506 DAP2 Dipeptidyl aminop 33.3 1.9E+02 0.0041 26.3 6.9 44 53-96 549-594 (620)
393 COG0218 Predicted GTPase [Gene 33.3 47 0.001 24.7 2.6 64 242-313 129-198 (200)
394 KOG1209 1-Acyl dihydroxyaceton 33.3 92 0.002 23.7 4.0 36 55-92 6-41 (289)
395 PF03721 UDPG_MGDP_dh_N: UDP-g 32.6 73 0.0016 23.4 3.6 29 60-92 4-32 (185)
396 PF01734 Patatin: Patatin-like 32.3 52 0.0011 23.8 2.9 21 131-151 28-48 (204)
397 PRK08220 2,3-dihydroxybenzoate 32.1 1.6E+02 0.0036 22.5 5.8 32 59-93 11-42 (252)
398 KOG1752 Glutaredoxin and relat 32.1 1.5E+02 0.0032 19.4 5.4 78 54-151 13-90 (104)
399 cd07217 Pat17_PNPLA8_PNPLA9_li 32.0 45 0.00098 27.5 2.6 18 133-150 44-61 (344)
400 cd07211 Pat_PNPLA8 Patatin-lik 31.9 39 0.00084 27.3 2.3 17 133-149 44-60 (308)
401 cd07232 Pat_PLPL Patain-like p 31.9 72 0.0016 27.1 3.8 24 131-154 96-119 (407)
402 COG0813 DeoD Purine-nucleoside 31.4 1.3E+02 0.0028 22.9 4.5 43 129-171 55-98 (236)
403 PF08433 KTI12: Chromatin asso 31.2 2.2E+02 0.0048 22.6 6.2 39 57-95 2-41 (270)
404 COG4221 Short-chain alcohol de 31.1 82 0.0018 24.4 3.6 34 56-92 6-39 (246)
405 cd01523 RHOD_Lact_B Member of 30.7 80 0.0017 20.0 3.2 27 55-86 62-88 (100)
406 PF00731 AIRC: AIR carboxylase 30.3 2E+02 0.0044 20.4 6.3 84 56-159 1-84 (150)
407 PRK07856 short chain dehydroge 30.1 2.1E+02 0.0045 22.0 6.0 32 58-92 8-39 (252)
408 PRK03482 phosphoglycerate muta 30.1 2.4E+02 0.0052 21.2 6.4 38 106-147 121-158 (215)
409 cd01971 Nitrogenase_VnfN_like 30.1 2.8E+02 0.006 23.8 7.1 75 56-138 87-164 (427)
410 cd05005 SIS_PHI Hexulose-6-pho 30.0 1.5E+02 0.0032 21.5 4.9 31 59-90 36-66 (179)
411 PF01656 CbiA: CobQ/CobB/MinD/ 30.0 1E+02 0.0022 22.5 4.1 34 59-92 2-36 (195)
412 PRK10867 signal recognition pa 29.9 3.7E+02 0.008 23.3 9.1 68 79-161 179-247 (433)
413 PRK05368 homoserine O-succinyl 29.9 88 0.0019 25.2 3.8 34 111-150 121-154 (302)
414 PRK12613 galactose-6-phosphate 29.8 2E+02 0.0043 20.2 6.2 72 72-164 15-86 (141)
415 cd00762 NAD_bind_malic_enz NAD 29.8 70 0.0015 25.0 3.1 84 58-149 27-126 (254)
416 KOG2872 Uroporphyrinogen decar 29.8 46 0.001 26.3 2.2 30 55-92 252-281 (359)
417 PF12122 DUF3582: Protein of u 29.6 1.5E+02 0.0031 19.4 4.1 50 264-313 10-60 (101)
418 cd07229 Pat_TGL3_like Triacylg 29.5 56 0.0012 27.4 2.8 23 131-153 112-134 (391)
419 cd03131 GATase1_HTS Type 1 glu 29.3 32 0.00069 25.0 1.2 36 110-151 83-118 (175)
420 PRK07313 phosphopantothenoylcy 29.3 2E+02 0.0044 21.1 5.4 60 55-118 113-178 (182)
421 COG1576 Uncharacterized conser 29.3 2.1E+02 0.0046 20.4 5.4 55 75-147 60-115 (155)
422 TIGR01278 DPOR_BchB light-inde 29.3 3.3E+02 0.0071 24.2 7.5 78 55-140 85-169 (511)
423 PRK14194 bifunctional 5,10-met 29.3 95 0.0021 25.0 3.9 38 111-150 143-182 (301)
424 cd07213 Pat17_PNPLA8_PNPLA9_li 29.1 51 0.0011 26.3 2.5 19 133-151 37-55 (288)
425 PF14403 CP_ATPgrasp_2: Circul 29.0 51 0.0011 28.2 2.5 47 46-94 178-224 (445)
426 cd01983 Fer4_NifH The Fer4_Nif 28.9 1.2E+02 0.0026 18.6 3.9 20 71-90 15-34 (99)
427 cd01521 RHOD_PspE2 Member of t 28.8 1.6E+02 0.0035 19.1 4.5 34 54-90 64-97 (110)
428 COG4850 Uncharacterized conser 28.7 2.8E+02 0.006 22.8 6.1 35 129-164 277-313 (373)
429 TIGR02133 RPI_actino ribose 5- 28.7 2.2E+02 0.0047 20.2 5.2 76 72-164 15-90 (148)
430 COG3887 Predicted signaling pr 28.6 1.9E+02 0.0041 25.9 5.6 51 108-164 320-376 (655)
431 PF00148 Oxidored_nitro: Nitro 28.6 2.2E+02 0.0048 24.0 6.3 62 71-140 92-156 (398)
432 cd07206 Pat_TGL3-4-5_SDP1 Tria 28.4 1E+02 0.0022 24.9 3.9 24 131-154 98-121 (298)
433 PLN03129 NADP-dependent malic 28.3 1E+02 0.0022 27.5 4.2 82 57-146 322-418 (581)
434 PRK08177 short chain dehydroge 28.2 96 0.0021 23.4 3.8 32 59-93 4-35 (225)
435 PF03949 Malic_M: Malic enzyme 28.1 55 0.0012 25.6 2.4 83 58-149 27-126 (255)
436 PRK09072 short chain dehydroge 28.1 91 0.002 24.2 3.7 32 58-92 7-38 (263)
437 cd05014 SIS_Kpsf KpsF-like pro 28.1 90 0.0019 20.9 3.3 31 59-90 3-33 (128)
438 TIGR00067 glut_race glutamate 27.7 2.1E+02 0.0046 22.4 5.5 44 267-312 14-57 (251)
439 PF03033 Glyco_transf_28: Glyc 27.5 62 0.0013 22.0 2.4 34 58-92 2-35 (139)
440 PRK05665 amidotransferase; Pro 27.4 1.6E+02 0.0035 22.8 4.8 37 106-148 72-108 (240)
441 COG0859 RfaF ADP-heptose:LPS h 27.4 1.2E+02 0.0025 25.0 4.3 35 55-89 175-214 (334)
442 cd01819 Patatin_and_cPLA2 Pata 27.3 1.2E+02 0.0026 21.5 3.9 18 131-148 29-46 (155)
443 PRK12828 short chain dehydroge 27.3 1E+02 0.0022 23.3 3.8 31 58-91 9-39 (239)
444 COG1832 Predicted CoA-binding 27.2 1.5E+02 0.0032 20.6 3.9 32 61-92 21-52 (140)
445 PRK07069 short chain dehydroge 27.1 2E+02 0.0044 21.9 5.5 31 59-92 2-32 (251)
446 PRK09936 hypothetical protein; 26.9 1.8E+02 0.0039 23.3 4.9 39 60-98 25-66 (296)
447 PF10686 DUF2493: Protein of u 26.5 82 0.0018 18.8 2.5 31 55-89 31-63 (71)
448 PRK13938 phosphoheptose isomer 26.5 2.2E+02 0.0049 21.2 5.2 24 129-152 45-68 (196)
449 TIGR02685 pter_reduc_Leis pter 26.5 3.1E+02 0.0068 21.3 6.9 33 57-92 2-34 (267)
450 PF12780 AAA_8: P-loop contain 26.4 3.3E+02 0.0072 21.6 6.8 57 55-124 31-87 (268)
451 COG5023 Tubulin [Cytoskeleton] 26.3 3.1E+02 0.0068 23.0 6.1 61 107-170 109-177 (443)
452 cd01981 Pchlide_reductase_B Pc 26.3 3.6E+02 0.0078 23.2 7.2 77 55-139 85-172 (430)
453 PF00091 Tubulin: Tubulin/FtsZ 26.1 2.8E+02 0.0061 21.0 5.9 32 110-143 106-137 (216)
454 PF03698 UPF0180: Uncharacteri 26.1 74 0.0016 19.6 2.2 19 72-90 10-28 (80)
455 cd07231 Pat_SDP1-like Sugar-De 25.9 93 0.002 25.3 3.3 20 131-150 97-116 (323)
456 PRK08339 short chain dehydroge 25.9 1.1E+02 0.0024 23.9 3.9 31 58-91 10-40 (263)
457 PLN02752 [acyl-carrier protein 25.9 56 0.0012 26.9 2.3 19 132-150 126-144 (343)
458 PRK07523 gluconate 5-dehydroge 25.6 1E+02 0.0023 23.7 3.7 30 59-91 13-42 (255)
459 PRK08263 short chain dehydroge 25.6 2.6E+02 0.0055 21.9 5.9 32 58-92 5-36 (275)
460 PRK13230 nitrogenase reductase 25.6 1.3E+02 0.0028 23.8 4.2 41 57-98 3-44 (279)
461 TIGR03708 poly_P_AMP_trns poly 25.4 3E+02 0.0065 24.2 6.4 71 54-142 297-369 (493)
462 PF01012 ETF: Electron transfe 25.4 2.5E+02 0.0055 19.9 9.7 78 56-151 34-113 (164)
463 KOG2182 Hydrolytic enzymes of 25.3 1.5E+02 0.0033 25.8 4.5 63 248-315 433-503 (514)
464 KOG0673 Thymidylate synthase [ 25.3 1.5E+02 0.0032 22.7 3.9 48 86-136 114-161 (293)
465 PRK07053 glutamine amidotransf 25.2 3.2E+02 0.007 21.1 8.7 83 55-148 3-100 (234)
466 PF01075 Glyco_transf_9: Glyco 25.1 1.3E+02 0.0028 23.1 4.1 36 54-89 104-143 (247)
467 PRK07326 short chain dehydroge 25.1 1.1E+02 0.0024 23.2 3.7 31 58-91 8-38 (237)
468 PRK15482 transcriptional regul 25.1 72 0.0016 25.4 2.7 31 59-90 138-168 (285)
469 PRK08415 enoyl-(acyl carrier p 25.1 1.4E+02 0.0031 23.5 4.3 33 58-91 7-39 (274)
470 cd07216 Pat17_PNPLA8_PNPLA9_li 25.1 51 0.0011 26.6 1.9 17 133-149 45-61 (309)
471 PRK09135 pteridine reductase; 25.0 1.1E+02 0.0024 23.3 3.7 32 58-92 8-39 (249)
472 PRK05876 short chain dehydroge 24.9 1.2E+02 0.0025 24.0 3.8 32 58-92 8-39 (275)
473 PF06500 DUF1100: Alpha/beta h 24.9 1.2E+02 0.0026 25.8 3.9 64 248-313 189-254 (411)
474 TIGR01279 DPOR_bchN light-inde 24.9 3.7E+02 0.008 22.9 6.9 80 55-142 84-166 (407)
475 PF13439 Glyco_transf_4: Glyco 24.8 2.5E+02 0.0054 19.6 5.8 23 71-93 17-39 (177)
476 TIGR02883 spore_cwlD N-acetylm 24.8 2.9E+02 0.0063 20.4 5.9 36 86-122 2-39 (189)
477 PRK07791 short chain dehydroge 24.7 3.2E+02 0.007 21.6 6.3 32 58-92 8-39 (286)
478 COG0505 CarA Carbamoylphosphat 24.5 2.6E+02 0.0056 23.2 5.5 66 72-148 190-267 (368)
479 cd00765 Pyrophosphate_PFK Phos 24.3 4.6E+02 0.0099 23.6 7.3 95 56-153 168-269 (550)
480 PF09314 DUF1972: Domain of un 24.3 3E+02 0.0065 20.4 10.6 93 57-149 5-113 (185)
481 COG5441 Uncharacterized conser 24.3 3.9E+02 0.0084 21.7 8.5 101 57-160 3-122 (401)
482 PF04763 DUF562: Protein of un 24.2 2.5E+02 0.0055 19.5 5.1 40 54-93 16-61 (146)
483 PLN02924 thymidylate kinase 24.1 1.9E+02 0.0041 22.0 4.6 41 53-93 13-54 (220)
484 PRK06953 short chain dehydroge 24.0 1.4E+02 0.003 22.5 4.0 31 59-92 4-34 (222)
485 PF03610 EIIA-man: PTS system 24.0 2.2E+02 0.0048 18.8 7.6 76 57-150 2-78 (116)
486 cd04951 GT1_WbdM_like This fam 23.9 3.9E+02 0.0086 21.6 9.7 37 57-93 2-39 (360)
487 KOG2214 Predicted esterase of 23.8 29 0.00064 29.8 0.3 29 131-160 203-231 (543)
488 PRK05866 short chain dehydroge 23.8 2.3E+02 0.0049 22.7 5.3 32 58-92 42-73 (293)
489 cd01715 ETF_alpha The electron 23.8 2.8E+02 0.0061 19.9 6.5 71 77-162 45-117 (168)
490 cd07199 Pat17_PNPLA8_PNPLA9_li 23.7 64 0.0014 25.2 2.1 18 133-150 37-54 (258)
491 PF03575 Peptidase_S51: Peptid 23.7 83 0.0018 22.2 2.5 13 132-144 70-82 (154)
492 PLN03050 pyridoxine (pyridoxam 23.7 1.7E+02 0.0037 22.8 4.3 33 57-90 62-94 (246)
493 COG3640 CooC CO dehydrogenase 23.7 1.6E+02 0.0035 22.8 4.0 34 58-91 2-37 (255)
494 PRK03094 hypothetical protein; 23.7 94 0.002 19.2 2.3 19 72-90 10-28 (80)
495 PRK12748 3-ketoacyl-(acyl-carr 23.5 1.5E+02 0.0033 22.8 4.2 34 58-92 7-40 (256)
496 PRK06603 enoyl-(acyl carrier p 23.5 1.5E+02 0.0033 23.1 4.2 33 57-90 9-41 (260)
497 PRK13869 plasmid-partitioning 23.5 1.6E+02 0.0034 25.1 4.4 41 56-96 122-163 (405)
498 COG4667 Predicted esterase of 23.5 58 0.0013 25.5 1.7 24 131-154 40-64 (292)
499 PRK08703 short chain dehydroge 23.4 1.4E+02 0.003 22.8 3.9 31 58-91 8-38 (239)
500 TIGR00682 lpxK tetraacyldisacc 23.4 1.7E+02 0.0036 23.8 4.4 41 57-99 29-73 (311)
No 1
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=281.98 Aligned_cols=307 Identities=45% Similarity=0.805 Sum_probs=287.1
Q ss_pred CCCCCCCCCCCCccccccccCCccceeEEecCCC-cEEEEEecCCC-CCCceEEEEecCCCCCcchhhHHHHHHHhcCCc
Q 020630 7 PETPPNYWGYMPEEEYYTSQGVRNGKEYFETPNG-KLFTQSFLPLD-QKVKATVYMTHGYGSDTGWMFQKICISYATWGY 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~ 84 (323)
....++.++..+..+++...++.....++++.+| ++.+..|.|.. .+++..|+++||++....|.|+.++..|+..||
T Consensus 4 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~~~~a~~l~~~g~ 83 (313)
T KOG1455|consen 4 DANRRSLAGELSEEEYYGDGGVTYSESFFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRYQSTAKRLAKSGF 83 (313)
T ss_pred cccCcccccccchhhhcCCCccceeeeeEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccchhhHHHHHHHHHhCCC
Confidence 4456777888888888888888899999999999 99999999965 378899999999999988899999999999999
Q ss_pred EEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccC
Q 020630 85 AVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 85 ~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~ 164 (323)
.|+++|++|||.|++...+..+++..++|+.+.++.+..+....+.+.+++||||||.+++.++.++|.. .+++|+++|
T Consensus 84 ~v~a~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~-w~G~ilvaP 162 (313)
T KOG1455|consen 84 AVYAIDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNF-WDGAILVAP 162 (313)
T ss_pred eEEEeeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcc-cccceeeec
Confidence 9999999999999999999999999999999999998877766688999999999999999999999998 999999999
Q ss_pred ccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcC
Q 020630 165 LFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNF 244 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (323)
.....+...+.+....+...+..+.+.|...+.+.......+++..+.....++..+...+......++++...++...+
T Consensus 163 mc~i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l 242 (313)
T KOG1455|consen 163 MCKISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNL 242 (313)
T ss_pred ccccCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhc
Confidence 99999999899999999999999999999888888888899999999999999999999999999999999999999999
Q ss_pred CcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 245 SKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 245 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
.++++|.+++||+.|.++.+..++.+++...+.+.++++|||.=|.++..++++..+.+...|.+||+++
T Consensus 243 ~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 243 NEVTVPFLILHGTDDKVTDPKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred ccccccEEEEecCCCcccCcHHHHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998889999999999999998788999999999999999876
No 2
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=1.6e-44 Score=289.57 Aligned_cols=309 Identities=42% Similarity=0.808 Sum_probs=227.2
Q ss_pred CCCCCCCCCCccccccccCCccceeEEecCCC-cEEEEEecCCCC-CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEE
Q 020630 9 TPPNYWGYMPEEEYYTSQGVRNGKEYFETPNG-KLFTQSFLPLDQ-KVKATVYMTHGYGSDTGWMFQKICISYATWGYAV 86 (323)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~-~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~v 86 (323)
+.-..|+..+.++++...++..+..++.+.|| +|+|+.|.+.+. .++++|||+||++.+..|.|..++..|+++||+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V 90 (330)
T PLN02298 11 TEVHFWGETPEEEYYALKGIKGSKSFFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDISWTFQSTAIFLAQMGFAC 90 (330)
T ss_pred CCccccccCCHHHHhhccCCccccceEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCcceehhHHHHHHHhCCCEE
Confidence 45568999999999999999999999999999 999999987642 4578899999998766667788888899899999
Q ss_pred EEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 87 FAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 87 i~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
+++|+||||.|.+......+++.+++|+.++++.+.........+++|+||||||.+++.++.++|++ |+++|+++|..
T Consensus 91 ~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~-v~~lvl~~~~~ 169 (330)
T PLN02298 91 FALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEG-FDGAVLVAPMC 169 (330)
T ss_pred EEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCccc-ceeEEEecccc
Confidence 99999999999865554458899999999999999865322245799999999999999999999998 99999999876
Q ss_pred CCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCc
Q 020630 167 VIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSK 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (323)
.........+........+..+.+..........................++..+...........+..........+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (330)
T PLN02298 170 KISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKD 249 (330)
T ss_pred cCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhh
Confidence 55433222221111112222222111111111111111111112222222333333333333444444444445677889
Q ss_pred ccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHhhc
Q 020630 247 VTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVERC 318 (323)
Q Consensus 247 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~~ 318 (323)
+++|+|+++|++|.++|++.++.+++.++.+++++++++++||.+++++|+...+.+.+.+.+||.+++...
T Consensus 250 i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~ 321 (330)
T PLN02298 250 VSIPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGK 321 (330)
T ss_pred cCCCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999988865678999999999999999998888899999999999987544
No 3
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=100.00 E-value=8.2e-43 Score=281.04 Aligned_cols=290 Identities=36% Similarity=0.654 Sum_probs=206.9
Q ss_pred cCCccceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCC
Q 020630 26 QGVRNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYL 104 (323)
Q Consensus 26 ~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~ 104 (323)
.++..++.++.+.+| +|++..|+|.+.+++++|||+||++++..+.|..+++.|+++||+|+++|+||||.|++.....
T Consensus 57 ~~~~~~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~ 136 (349)
T PLN02385 57 SGIKTEESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYI 136 (349)
T ss_pred cCcceeeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCc
Confidence 345566677888999 9999999987656789999999999886645788999999889999999999999998765555
Q ss_pred CChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhc
Q 020630 105 GDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGL 184 (323)
Q Consensus 105 ~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~ 184 (323)
.+++++++|+.++++.+..+......+++|+||||||.+++.++.++|++ |+++|+++|....................
T Consensus 137 ~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~-v~glVLi~p~~~~~~~~~~~~~~~~~~~~ 215 (349)
T PLN02385 137 PSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNA-WDGAILVAPMCKIADDVVPPPLVLQILIL 215 (349)
T ss_pred CCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcch-hhheeEecccccccccccCchHHHHHHHH
Confidence 58999999999999998764322245799999999999999999999999 99999999876543322222212112111
Q ss_pred ccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCc
Q 020630 185 LFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCP 264 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~ 264 (323)
+....+................+.............+...........++....+....+.++++|+|+|+|++|.++|+
T Consensus 216 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~ 295 (349)
T PLN02385 216 LANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDP 295 (349)
T ss_pred HHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccCh
Confidence 11111111111111111111112111111111122222222333444444444455677889999999999999999999
Q ss_pred hhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 265 TSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
+.++.+++.+..+++++++++++||.++.++|++..+.+.+.|.+||+++..
T Consensus 296 ~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 296 SVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred HHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 9999999988656789999999999999999988888899999999998864
No 4
>PHA02857 monoglyceride lipase; Provisional
Probab=100.00 E-value=2.7e-37 Score=242.18 Aligned_cols=269 Identities=22% Similarity=0.443 Sum_probs=185.6
Q ss_pred EEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHh
Q 020630 34 YFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAA 112 (323)
Q Consensus 34 ~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~ 112 (323)
++...|| +|+|+.|.|.+ .+++.|+++||+++++. .|..+++.|+++||+|+++|+||||.|+.......++..+++
T Consensus 4 ~~~~~~g~~l~~~~~~~~~-~~~~~v~llHG~~~~~~-~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~ 81 (276)
T PHA02857 4 CMFNLDNDYIYCKYWKPIT-YPKALVFISHGAGEHSG-RYEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVR 81 (276)
T ss_pred eeecCCCCEEEEEeccCCC-CCCEEEEEeCCCccccc-hHHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHH
Confidence 5667799 99999998864 56788888899998877 899999999999999999999999999865433346777888
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccccccccc
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTW 192 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
|+.+.++.+....+ ..+++|+||||||.+|+.+|.++|+. |+++|+++|..................... .+..
T Consensus 82 d~~~~l~~~~~~~~--~~~~~lvG~S~GG~ia~~~a~~~p~~-i~~lil~~p~~~~~~~~~~~~~~~~~~~~~---~~~~ 155 (276)
T PHA02857 82 DVVQHVVTIKSTYP--GVPVFLLGHSMGATISILAAYKNPNL-FTAMILMSPLVNAEAVPRLNLLAAKLMGIF---YPNK 155 (276)
T ss_pred HHHHHHHHHHhhCC--CCCEEEEEcCchHHHHHHHHHhCccc-cceEEEeccccccccccHHHHHHHHHHHHh---CCCC
Confidence 88888887765433 45899999999999999999999998 999999998765221111100000000000 0000
Q ss_pred ccCCCcccccccc-cChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHH
Q 020630 193 AAMPDNKMVGKAI-KDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLY 271 (323)
Q Consensus 193 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~ 271 (323)
.. ........ .+.........++..........+..............+.++++|+|+++|++|.++|++.+..+.
T Consensus 156 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 156 IV---GKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred cc---CCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHH
Confidence 00 00000001 111111111122221111122222333333334456678899999999999999999999999998
Q ss_pred HHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 272 EKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 272 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
+.+. +++++.+++++||.++.|++ +..+++.+.+.+||+.+.
T Consensus 233 ~~~~-~~~~~~~~~~~gH~~~~e~~-~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 233 QHAN-CNREIKIYEGAKHHLHKETD-EVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHcc-CCceEEEeCCCcccccCCch-hHHHHHHHHHHHHHHHhc
Confidence 8874 36899999999999997765 567889999999999863
No 5
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=100.00 E-value=2.5e-36 Score=234.38 Aligned_cols=282 Identities=24% Similarity=0.429 Sum_probs=220.6
Q ss_pred ccceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCC-CCCCCCCC
Q 020630 29 RNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSD-GIRCYLGD 106 (323)
Q Consensus 29 ~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~-~~~~~~~~ 106 (323)
...+..+...|| .++|..|.+.. .++.+||++||++.+.. .|..++..|..+||.|+++|+||||.|. +..+...+
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~-~~~g~Vvl~HG~~Eh~~-ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~ 85 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPE-PPKGVVVLVHGLGEHSG-RYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDS 85 (298)
T ss_pred ccccceeecCCCceEEEEeecCCC-CCCcEEEEecCchHHHH-HHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchh
Confidence 345677888999 99999998875 33489999999999887 8899999999999999999999999998 77777778
Q ss_pred hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccc
Q 020630 107 MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLF 186 (323)
Q Consensus 107 ~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (323)
+.++.+|+.++++.+....+ ..+++++||||||.|++.++.+++.. |+++|+.+|....................+.
T Consensus 86 f~~~~~dl~~~~~~~~~~~~--~~p~~l~gHSmGg~Ia~~~~~~~~~~-i~~~vLssP~~~l~~~~~~~~~~~~~~~~~~ 162 (298)
T COG2267 86 FADYVDDLDAFVETIAEPDP--GLPVFLLGHSMGGLIALLYLARYPPR-IDGLVLSSPALGLGGAILRLILARLALKLLG 162 (298)
T ss_pred HHHHHHHHHHHHHHHhccCC--CCCeEEEEeCcHHHHHHHHHHhCCcc-ccEEEEECccccCChhHHHHHHHHHhccccc
Confidence 99999999999999987544 67999999999999999999999987 9999999999887641111112222333333
Q ss_pred ccccccccCC---CcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhH-HHHhcCCcccccEEEEeeCCCccc
Q 020630 187 GLADTWAAMP---DNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQ-YIQDNFSKVTVPFLTVHGTADGVT 262 (323)
Q Consensus 187 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~i~g~~D~~~ 262 (323)
.+.+.+.... .........+++.....+..++..........+......... ........+++|+|+++|++|.++
T Consensus 163 ~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D~vv 242 (298)
T COG2267 163 RIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDDRVV 242 (298)
T ss_pred ccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCCccc
Confidence 3333333222 122234445677788888888887777777777766666554 233446778999999999999999
Q ss_pred C-chhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 263 C-PTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 263 ~-~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
+ .+...++++..+.+++++++++|+.|..+.|.+ ...+++.+.+.+|+.+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~-~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 243 DNVEGLARFFERAGSPDKELKVIPGAYHELLNEPD-RAREEVLKDILAWLAEALP 296 (298)
T ss_pred cCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcc-hHHHHHHHHHHHHHHhhcc
Confidence 9 788888888888888999999999999995443 3448899999999998753
No 6
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=100.00 E-value=8.3e-36 Score=240.32 Aligned_cols=276 Identities=30% Similarity=0.539 Sum_probs=191.8
Q ss_pred cceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChH
Q 020630 30 NGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDME 108 (323)
Q Consensus 30 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~ 108 (323)
.....+...+| .+++..|.|...+++++||++||++++.. .|..+++.|+++||+|+++|+||||.|++......+++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~-~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~ 188 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAGEMRGILIIIHGLNEHSG-RYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLD 188 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCCCCceEEEEECCchHHHH-HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHH
Confidence 44556778888 99999999865466889999999998765 78899999999999999999999999987765556888
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC---CCeeEEEEccCccCCCCCCchhHHHHHHhhcc
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP---NTWTGLIFSAPLFVIPENMKPSKLHLFMYGLL 185 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 185 (323)
.+++|+.++++.+..+.+ ..+++++||||||.+++.++. +|+ . ++++|+.+|......... . ........
T Consensus 189 ~~~~Dl~~~l~~l~~~~~--~~~i~lvGhSmGG~ial~~a~-~p~~~~~-v~glVL~sP~l~~~~~~~--~-~~~~~~l~ 261 (395)
T PLN02652 189 YVVEDTEAFLEKIRSENP--GVPCFLFGHSTGGAVVLKAAS-YPSIEDK-LEGIVLTSPALRVKPAHP--I-VGAVAPIF 261 (395)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCEEEEEECHHHHHHHHHHh-ccCcccc-cceEEEECcccccccchH--H-HHHHHHHH
Confidence 999999999999987643 458999999999999998765 453 5 999999998865433211 1 11111111
Q ss_pred cccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCch
Q 020630 186 FGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPT 265 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~ 265 (323)
....+.+..............++........++..+......................+.++++|+|+++|++|.++|++
T Consensus 262 ~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~ 341 (395)
T PLN02652 262 SLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPL 341 (395)
T ss_pred HHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHH
Confidence 11111111111000000011111111111222222222222222333333334456778899999999999999999999
Q ss_pred hHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 266 SSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
.++.+++.+.+++++++++++++|..+++ ...+++.+.+.+||..++.
T Consensus 342 ~a~~l~~~~~~~~k~l~~~~ga~H~l~~e---~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 342 ASQDLYNEAASRHKDIKLYDGFLHDLLFE---PEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred HHHHHHHhcCCCCceEEEECCCeEEeccC---CCHHHHHHHHHHHHHHHhh
Confidence 99999998765568999999999999863 2468899999999998875
No 7
>PRK10749 lysophospholipase L2; Provisional
Probab=100.00 E-value=5.5e-35 Score=233.47 Aligned_cols=277 Identities=16% Similarity=0.226 Sum_probs=185.9
Q ss_pred cceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCC-----CC
Q 020630 30 NGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIR-----CY 103 (323)
Q Consensus 30 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~ 103 (323)
.+..++...+| +++|..+++. .++++||++||++++.. .|..++..|+++||+|+++|+||||.|+... ..
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~--~~~~~vll~HG~~~~~~-~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAP--HHDRVVVICPGRIESYV-KYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCC--CCCcEEEEECCccchHH-HHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 35567778899 9999999875 34679999999998776 7888898898899999999999999997532 12
Q ss_pred CCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhh
Q 020630 104 LGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYG 183 (323)
Q Consensus 104 ~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~ 183 (323)
..+++++++|+.++++.+....+ ..+++++||||||.+++.+|.++|+. ++++|+++|.......... .....+..
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~~~--~~~~~l~GhSmGG~ia~~~a~~~p~~-v~~lvl~~p~~~~~~~~~~-~~~~~~~~ 182 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQPGP--YRKRYALAHSMGGAILTLFLQRHPGV-FDAIALCAPMFGIVLPLPS-WMARRILN 182 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhcCC--CCCeEEEEEcHHHHHHHHHHHhCCCC-cceEEEECchhccCCCCCc-HHHHHHHH
Confidence 34789999999999998754422 45899999999999999999999998 9999999987654322211 11111111
Q ss_pred ccccc---cccc----ccCCCccccccc-ccChh----hHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccE
Q 020630 184 LLFGL---ADTW----AAMPDNKMVGKA-IKDPE----KLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPF 251 (323)
Q Consensus 184 ~~~~~---~~~~----~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 251 (323)
..... .... ............ ..... ....+..++..........+..............+.++++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~ 262 (330)
T PRK10749 183 WAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPL 262 (330)
T ss_pred HHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCCCE
Confidence 11000 0000 000000000000 01111 112222222211111222333333333333456678899999
Q ss_pred EEEeeCCCcccCchhHHHHHHHhc-----CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 252 LTVHGTADGVTCPTSSKLLYEKAS-----SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 252 l~i~g~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
|+|+|++|.+++++.++.+++.++ .+++++++++|+||.++.|.+. ..+.+.+.|.+||+++
T Consensus 263 Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~-~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 263 LLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDA-MRSVALNAIVDFFNRH 329 (330)
T ss_pred EEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcH-HHHHHHHHHHHHHhhc
Confidence 999999999999999998888763 1456899999999999976653 4688999999999864
No 8
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=4.1e-35 Score=231.77 Aligned_cols=255 Identities=17% Similarity=0.186 Sum_probs=166.1
Q ss_pred cCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCC------CCCCChHH
Q 020630 37 TPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIR------CYLGDMEK 109 (323)
Q Consensus 37 ~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~------~~~~~~~~ 109 (323)
..+| +++|...+++ +++|||+||+++++. .|..+++.|+++ |+|+++|+||||.|+.+. ...+++++
T Consensus 14 ~~~~~~i~y~~~G~~----~~~vlllHG~~~~~~-~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~ 87 (294)
T PLN02824 14 RWKGYNIRYQRAGTS----GPALVLVHGFGGNAD-HWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFET 87 (294)
T ss_pred EEcCeEEEEEEcCCC----CCeEEEECCCCCChh-HHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCHHH
Confidence 3467 9998887643 478999999999877 899999999887 899999999999998653 13468999
Q ss_pred HHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCC-chh--H-HHHHHhhcc
Q 020630 110 VAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENM-KPS--K-LHLFMYGLL 185 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~-~~~--~-~~~~~~~~~ 185 (323)
+++|+.++++.+..+ +++++||||||.+++.+|.++|++ |+++|++++........ ... . ....+...+
T Consensus 88 ~a~~l~~~l~~l~~~------~~~lvGhS~Gg~va~~~a~~~p~~-v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (294)
T PLN02824 88 WGEQLNDFCSDVVGD------PAFVICNSVGGVVGLQAAVDAPEL-VRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLL 160 (294)
T ss_pred HHHHHHHHHHHhcCC------CeEEEEeCHHHHHHHHHHHhChhh-eeEEEEECCCcccccccccchhhhHHHHHHHHHH
Confidence 999999999998754 899999999999999999999999 99999999764321111 000 0 000111111
Q ss_pred cccc--ccc-ccCCC----cccccccc-----cChhhHHHhhcCCcccCCCCCchhHHHHHHhh--HHHHhcCCcccccE
Q 020630 186 FGLA--DTW-AAMPD----NKMVGKAI-----KDPEKLKVIASNPRRYTGKPRVGTMREIARVC--QYIQDNFSKVTVPF 251 (323)
Q Consensus 186 ~~~~--~~~-~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~P~ 251 (323)
.... ..+ ..... ...+.... ........+.. .............+.... ......+.++++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 237 (294)
T PLN02824 161 RETAVGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILR---PGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPV 237 (294)
T ss_pred hchhHHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHh---ccCCchHHHHHHHHhccccccchHHHHhhcCCCe
Confidence 0000 000 00000 00000000 00000000000 000000001111111000 01234567889999
Q ss_pred EEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 252 LTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 252 l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
++|+|++|.+++.+.++.+.+.. +++++++++++||++++++| +++.+.|.+|+++
T Consensus 238 lvi~G~~D~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e~p----~~~~~~i~~fl~~ 293 (294)
T PLN02824 238 LIAWGEKDPWEPVELGRAYANFD--AVEDFIVLPGVGHCPQDEAP----ELVNPLIESFVAR 293 (294)
T ss_pred EEEEecCCCCCChHHHHHHHhcC--CccceEEeCCCCCChhhhCH----HHHHHHHHHHHhc
Confidence 99999999999999888877766 66899999999999996666 6699999999875
No 9
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=100.00 E-value=3.3e-34 Score=224.45 Aligned_cols=258 Identities=16% Similarity=0.132 Sum_probs=168.1
Q ss_pred cCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHH
Q 020630 37 TPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSL 115 (323)
Q Consensus 37 ~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~ 115 (323)
..+| +++|...... ..+++|||+||++++.. .|..+++.|.+ +|+|+++|+||||.|+.+.. .++++++++++.
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~plvllHG~~~~~~-~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~-~~~~~~~~~~~~ 82 (276)
T TIGR02240 8 DLDGQSIRTAVRPGK--EGLTPLLIFNGIGANLE-LVFPFIEALDP-DLEVIAFDVPGVGGSSTPRH-PYRFPGLAKLAA 82 (276)
T ss_pred ccCCcEEEEEEecCC--CCCCcEEEEeCCCcchH-HHHHHHHHhcc-CceEEEECCCCCCCCCCCCC-cCcHHHHHHHHH
Confidence 3467 9999776422 22579999999999887 89999999977 49999999999999986533 358999999999
Q ss_pred HHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccC
Q 020630 116 SFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAM 195 (323)
Q Consensus 116 ~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
++++.+..+ +++|+||||||.+++.+|.++|++ |+++|++++...............................
T Consensus 83 ~~i~~l~~~------~~~LvG~S~GG~va~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (276)
T TIGR02240 83 RMLDYLDYG------QVNAIGVSWGGALAQQFAHDYPER-CKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPSHGIH 155 (276)
T ss_pred HHHHHhCcC------ceEEEEECHHHHHHHHHHHHCHHH-hhheEEeccCCccccCCCchhHHHHhcCchhhhccccccc
Confidence 999998654 899999999999999999999998 9999999987653211111111000000000000000000
Q ss_pred CCcccccccc-cChhhHHHhhcCCcccCCCCCchhHHHHHHhh-HHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHH
Q 020630 196 PDNKMVGKAI-KDPEKLKVIASNPRRYTGKPRVGTMREIARVC-QYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEK 273 (323)
Q Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~ 273 (323)
.......... .++......... ................. ......+.++++|+|+|+|++|.++|++.++.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~~ 232 (276)
T TIGR02240 156 IAPDIYGGAFRRDPELAMAHASK---VRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAWR 232 (276)
T ss_pred hhhhhccceeeccchhhhhhhhh---cccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHHh
Confidence 0000000000 011110000000 00011111111111111 112244788999999999999999999999999998
Q ss_pred hcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 274 ASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 274 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
+ ++++++++++ ||++++++| +++++.|.+|+++...
T Consensus 233 ~--~~~~~~~i~~-gH~~~~e~p----~~~~~~i~~fl~~~~~ 268 (276)
T TIGR02240 233 I--PNAELHIIDD-GHLFLITRA----EAVAPIIMKFLAEERQ 268 (276)
T ss_pred C--CCCEEEEEcC-CCchhhccH----HHHHHHHHHHHHHhhh
Confidence 8 7789999985 999996665 6699999999987654
No 10
>PRK00870 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=5e-34 Score=226.24 Aligned_cols=253 Identities=16% Similarity=0.135 Sum_probs=159.7
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC-CCCChHHHHhhHHHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC-YLGDMEKVAASSLSFFK 119 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-~~~~~~~~~~d~~~~i~ 119 (323)
+++|...+..+ +|+|||+||++++.. .|..+++.|.++||+|+++|+||||.|+.+.. ..++++++++|+.++++
T Consensus 35 ~i~y~~~G~~~---~~~lvliHG~~~~~~-~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~ 110 (302)
T PRK00870 35 RMHYVDEGPAD---GPPVLLLHGEPSWSY-LYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYARHVEWMRSWFE 110 (302)
T ss_pred EEEEEecCCCC---CCEEEEECCCCCchh-hHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 57777766533 679999999998877 89999999987899999999999999976532 34589999999999999
Q ss_pred HHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccccccccccc-CCCc
Q 020630 120 HVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAA-MPDN 198 (323)
Q Consensus 120 ~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 198 (323)
++..+ +++++||||||.+++.+|.++|++ |+++|++++........... ............ +.... ....
T Consensus 111 ~l~~~------~v~lvGhS~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~ 181 (302)
T PRK00870 111 QLDLT------DVTLVCQDWGGLIGLRLAAEHPDR-FARLVVANTGLPTGDGPMPD-AFWAWRAFSQYS-PVLPVGRLVN 181 (302)
T ss_pred HcCCC------CEEEEEEChHHHHHHHHHHhChhh-eeEEEEeCCCCCCccccchH-HHhhhhcccccC-chhhHHHHhh
Confidence 88644 899999999999999999999999 99999998753221110010 000011100000 00000 0000
Q ss_pred ccccccccChhhHHHhhc---------CCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHH
Q 020630 199 KMVGKAIKDPEKLKVIAS---------NPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKL 269 (323)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~ 269 (323)
........... ...+.. ...........................+.++++|+++|+|++|.++|... +.
T Consensus 182 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~ 259 (302)
T PRK00870 182 GGTVRDLSDAV-RAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AI 259 (302)
T ss_pred ccccccCCHHH-HHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HH
Confidence 00000000000 000000 00000000000000000001111234568899999999999999999766 77
Q ss_pred HHHHhcCCCCc---EEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 270 LYEKASSADKS---IKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 270 ~~~~~~~~~~~---~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
+.+.+ ++++ +.+++++||++++++| +.+.+.|.+|++++
T Consensus 260 ~~~~~--~~~~~~~~~~i~~~gH~~~~e~p----~~~~~~l~~fl~~~ 301 (302)
T PRK00870 260 LQKRI--PGAAGQPHPTIKGAGHFLQEDSG----EELAEAVLEFIRAT 301 (302)
T ss_pred HHhhc--ccccccceeeecCCCccchhhCh----HHHHHHHHHHHhcC
Confidence 88877 4444 8899999999996666 66899999998753
No 11
>PRK03592 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=2.5e-33 Score=221.71 Aligned_cols=258 Identities=13% Similarity=0.131 Sum_probs=164.5
Q ss_pred cCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHH
Q 020630 37 TPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSL 115 (323)
Q Consensus 37 ~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~ 115 (323)
..+| +++|..++. +++|||+||++++.. .|..+++.|+++ |+|+++|+||||.|+.+.. .++++++++|+.
T Consensus 13 ~~~g~~i~y~~~G~-----g~~vvllHG~~~~~~-~w~~~~~~L~~~-~~via~D~~G~G~S~~~~~-~~~~~~~a~dl~ 84 (295)
T PRK03592 13 EVLGSRMAYIETGE-----GDPIVFLHGNPTSSY-LWRNIIPHLAGL-GRCLAPDLIGMGASDKPDI-DYTFADHARYLD 84 (295)
T ss_pred EECCEEEEEEEeCC-----CCEEEEECCCCCCHH-HHHHHHHHHhhC-CEEEEEcCCCCCCCCCCCC-CCCHHHHHHHHH
Confidence 4477 999998873 579999999998876 899999999987 6999999999999987643 358999999999
Q ss_pred HHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccc--cccc
Q 020630 116 SFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLA--DTWA 193 (323)
Q Consensus 116 ~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 193 (323)
++++.+..+ +++++||||||.+|+.++.++|++ |+++|++++....................+.... ....
T Consensus 85 ~ll~~l~~~------~~~lvGhS~Gg~ia~~~a~~~p~~-v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (295)
T PRK03592 85 AWFDALGLD------DVVLVGHDWGSALGFDWAARHPDR-VRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMV 157 (295)
T ss_pred HHHHHhCCC------CeEEEEECHHHHHHHHHHHhChhh-eeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccc
Confidence 999998754 899999999999999999999999 9999999984332110000000011111110000 0000
Q ss_pred c---CCCcccccc----cccChhhHHHhhcCCcccCCCCCc---------hhHHHHHHhhHHHHhcCCcccccEEEEeeC
Q 020630 194 A---MPDNKMVGK----AIKDPEKLKVIASNPRRYTGKPRV---------GTMREIARVCQYIQDNFSKVTVPFLTVHGT 257 (323)
Q Consensus 194 ~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~ 257 (323)
. ......... ........................ ................+.++++|+|+|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 237 (295)
T PRK03592 158 LEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAE 237 (295)
T ss_pred cchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEecc
Confidence 0 000000000 000000000000000000000000 000011111122345577889999999999
Q ss_pred CCcccCchhHHHHH-HHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 258 ADGVTCPTSSKLLY-EKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 258 ~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
+|.++++.....+. +.. +++++.+++++||++++++| +++.+.|.+|+++..
T Consensus 238 ~D~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e~p----~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 238 PGAILTTGAIRDWCRSWP--NQLEITVFGAGLHFAQEDSP----EEIGAAIAAWLRRLR 290 (295)
T ss_pred CCcccCcHHHHHHHHHhh--hhcceeeccCcchhhhhcCH----HHHHHHHHHHHHHhc
Confidence 99999655555554 445 67899999999999996665 669999999998764
No 12
>PLN02965 Probable pheophorbidase
Probab=100.00 E-value=7.4e-34 Score=219.71 Aligned_cols=240 Identities=15% Similarity=0.204 Sum_probs=154.7
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
...|||+||++.+.. .|..+++.|.+.||+|+++|+||||.|+......++++++++|+.++++.+.. ..++++
T Consensus 3 ~~~vvllHG~~~~~~-~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~-----~~~~~l 76 (255)
T PLN02965 3 EIHFVFVHGASHGAW-CWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPP-----DHKVIL 76 (255)
T ss_pred ceEEEEECCCCCCcC-cHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCC-----CCCEEE
Confidence 346999999998766 89999999977789999999999999986554446899999999999999853 138999
Q ss_pred EEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhc--ccccc-cccccCCCc------cccccc-
Q 020630 135 FGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGL--LFGLA-DTWAAMPDN------KMVGKA- 204 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~------~~~~~~- 204 (323)
+||||||.+++.+|.++|++ |+++|++++.................... ..... ......... ......
T Consensus 77 vGhSmGG~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (255)
T PLN02965 77 VGHSIGGGSVTEALCKFTDK-ISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHYY 155 (255)
T ss_pred EecCcchHHHHHHHHhCchh-eeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHHHH
Confidence 99999999999999999999 99999998764322111110000000000 00000 000000000 000000
Q ss_pred ccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEe
Q 020630 205 IKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIY 284 (323)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (323)
............ ............... ......+.++++|+++++|++|.++|++.++.+.+.+ ++++++++
T Consensus 156 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~--~~a~~~~i 227 (255)
T PLN02965 156 YNQSPLEDYTLS--SKLLRPAPVRAFQDL----DKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENW--PPAQTYVL 227 (255)
T ss_pred hcCCCHHHHHHH--HHhcCCCCCcchhhh----hhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhC--CcceEEEe
Confidence 000000000000 000000000011011 1122345578999999999999999999999999998 78899999
Q ss_pred cCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 285 DGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 285 ~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+++||++++++| +++.+.|.+|++.
T Consensus 228 ~~~GH~~~~e~p----~~v~~~l~~~~~~ 252 (255)
T PLN02965 228 EDSDHSAFFSVP----TTLFQYLLQAVSS 252 (255)
T ss_pred cCCCCchhhcCH----HHHHHHHHHHHHH
Confidence 999999997766 5588888888764
No 13
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=100.00 E-value=2.6e-33 Score=228.47 Aligned_cols=264 Identities=17% Similarity=0.211 Sum_probs=166.2
Q ss_pred EEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHH-HHHHHh---cCCcEEEEeccccCcCCCCCCCCCCChH
Q 020630 34 YFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQK-ICISYA---TWGYAVFAADLLGHGRSDGIRCYLGDME 108 (323)
Q Consensus 34 ~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~-~~~~l~---~~g~~vi~~d~~G~G~s~~~~~~~~~~~ 108 (323)
.+.+.+| +|+|...+|.++..+++|||+||++++.. .|.. +.+.|. +++|+|+++|+||||.|+.+....++++
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~-~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~ytl~ 257 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSA-FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLYTLR 257 (481)
T ss_pred eeEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHH-HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcCCHH
Confidence 3444566 99999999876455789999999998876 6764 445554 3589999999999999987654556899
Q ss_pred HHHhhHH-HHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcc--
Q 020630 109 KVAASSL-SFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLL-- 185 (323)
Q Consensus 109 ~~~~d~~-~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~-- 185 (323)
++++++. .+++.++.+ +++++||||||.+++.+|.++|++ |+++|++++........... ........
T Consensus 258 ~~a~~l~~~ll~~lg~~------k~~LVGhSmGG~iAl~~A~~~Pe~-V~~LVLi~~~~~~~~~~~~~--~~~~~~~~~~ 328 (481)
T PLN03087 258 EHLEMIERSVLERYKVK------SFHIVAHSLGCILALALAVKHPGA-VKSLTLLAPPYYPVPKGVQA--TQYVMRKVAP 328 (481)
T ss_pred HHHHHHHHHHHHHcCCC------CEEEEEECHHHHHHHHHHHhChHh-ccEEEEECCCccccccchhH--HHHHHHHhcc
Confidence 9999994 788887644 899999999999999999999999 99999999765432221110 00000000
Q ss_pred cccccccccCC-Cccccc---cc-----ccChhhHHH----hhcC-Cccc--------CCCCCchhHHHHHHh----h-H
Q 020630 186 FGLADTWAAMP-DNKMVG---KA-----IKDPEKLKV----IASN-PRRY--------TGKPRVGTMREIARV----C-Q 238 (323)
Q Consensus 186 ~~~~~~~~~~~-~~~~~~---~~-----~~~~~~~~~----~~~~-~~~~--------~~~~~~~~~~~~~~~----~-~ 238 (323)
....+...... ...+.. .. ......... .... .... ...........+... . .
T Consensus 329 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l~~ 408 (481)
T PLN03087 329 RRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKLDG 408 (481)
T ss_pred cccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhhhh
Confidence 00000000000 000000 00 000000000 0000 0000 000000000001100 0 1
Q ss_pred HHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccc-cCCchhHHHHHHHHHHHHHH
Q 020630 239 YIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQ-GEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 239 ~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~i~~fl~~ 313 (323)
.......++++|+|+|+|++|.++|++..+.+.+.+ +++++++++++||..++ ++| +.+++.|.+|...
T Consensus 409 ~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~i--P~a~l~vI~~aGH~~~v~e~p----~~fa~~L~~F~~~ 478 (481)
T PLN03087 409 YLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKV--PRARVKVIDDKDHITIVVGRQ----KEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhC--CCCEEEEeCCCCCcchhhcCH----HHHHHHHHHHhhc
Confidence 112223468999999999999999999999999999 88999999999999885 555 6688888888754
No 14
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=100.00 E-value=5.6e-33 Score=208.21 Aligned_cols=265 Identities=18% Similarity=0.144 Sum_probs=176.0
Q ss_pred cceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC-CCCCh
Q 020630 30 NGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC-YLGDM 107 (323)
Q Consensus 30 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-~~~~~ 107 (323)
..++.+.+.+| ++++..-++.+ +|.|+++||+..... .|+.....|+.+||+|+++|+||+|.|+.+.. ..|++
T Consensus 21 ~~~hk~~~~~gI~~h~~e~g~~~---gP~illlHGfPe~wy-swr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~ 96 (322)
T KOG4178|consen 21 AISHKFVTYKGIRLHYVEGGPGD---GPIVLLLHGFPESWY-SWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTI 96 (322)
T ss_pred hcceeeEEEccEEEEEEeecCCC---CCEEEEEccCCccch-hhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeH
Confidence 34667788889 88888887765 999999999998755 89999999999999999999999999998876 67899
Q ss_pred HHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccc
Q 020630 108 EKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFG 187 (323)
Q Consensus 108 ~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (323)
..++.|+..+++.++.+ +++++||+||+.+|+.+|..+|++ |+++|+++.....+....... . ...+...
T Consensus 97 ~~l~~di~~lld~Lg~~------k~~lvgHDwGaivaw~la~~~Per-v~~lv~~nv~~~~p~~~~~~~-~--~~~f~~~ 166 (322)
T KOG4178|consen 97 DELVGDIVALLDHLGLK------KAFLVGHDWGAIVAWRLALFYPER-VDGLVTLNVPFPNPKLKPLDS-S--KAIFGKS 166 (322)
T ss_pred HHHHHHHHHHHHHhccc------eeEEEeccchhHHHHHHHHhChhh-cceEEEecCCCCCcccchhhh-h--ccccCcc
Confidence 99999999999999955 999999999999999999999999 999999987665111110000 0 0000000
Q ss_pred cccc-ccc-CCCcc-----------------------cccccc---cChhhHHHhhcCCcccC---CCCCchhHHHHHHh
Q 020630 188 LADT-WAA-MPDNK-----------------------MVGKAI---KDPEKLKVIASNPRRYT---GKPRVGTMREIARV 236 (323)
Q Consensus 188 ~~~~-~~~-~~~~~-----------------------~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 236 (323)
.-.. +.. ..... ...... ........+......+. -.....+.+++.+.
T Consensus 167 ~y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~ 246 (322)
T KOG4178|consen 167 YYICLFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRN 246 (322)
T ss_pred ceeEeccccCcchhhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhC
Confidence 0000 000 00000 000000 00000111111111111 11122333333333
Q ss_pred hHHHHhcCCcccccEEEEeeCCCcccCchhHHH-HHHHhcCCCC-cEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 237 CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKL-LYEKASSADK-SIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 237 ~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
.+-....+.++++|+++|+|+.|.+.+...... +.+.+ ++. +.++++++||+...|+| +++++.+.+|+++.
T Consensus 247 w~a~~~~~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~v--p~l~~~vv~~~~gH~vqqe~p----~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 247 WEAAPWALAKITIPVLFIWGDLDPVLPYPIFGELYRKDV--PRLTERVVIEGIGHFVQQEKP----QEVNQAILGFINSF 320 (322)
T ss_pred chhccccccccccceEEEEecCcccccchhHHHHHHHhh--ccccceEEecCCcccccccCH----HHHHHHHHHHHHhh
Confidence 221234567889999999999999988763333 33344 333 78899999999996666 66999999999864
No 15
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=100.00 E-value=7.2e-33 Score=220.35 Aligned_cols=268 Identities=22% Similarity=0.345 Sum_probs=190.4
Q ss_pred EecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhh-------------------------HHHHHHHhcCCcEEEE
Q 020630 35 FETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMF-------------------------QKICISYATWGYAVFA 88 (323)
Q Consensus 35 ~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~-------------------------~~~~~~l~~~g~~vi~ 88 (323)
+.+.|| +|+++.|.+. +++.+|+++||++.+..+.+ ..+++.|.++||+|++
T Consensus 2 ~~~~~g~~l~~~~~~~~--~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~ 79 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK--NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYG 79 (332)
T ss_pred ccCCCCCeEEEeeeecc--CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEE
Confidence 456789 9999999875 46889999999998865221 4678999999999999
Q ss_pred eccccCcCCCCC---CCCCCChHHHHhhHHHHHHHHHhh-------------------CCCCCCCEEEEEechhHHHHHH
Q 020630 89 ADLLGHGRSDGI---RCYLGDMEKVAASSLSFFKHVRHS-------------------EPYRDLPAFLFGESMGGAATML 146 (323)
Q Consensus 89 ~d~~G~G~s~~~---~~~~~~~~~~~~d~~~~i~~l~~~-------------------~~~~~~~~~l~G~S~Gg~~a~~ 146 (323)
+|+||||.|.+. .....+++++++|+.++++.+... ++ ...+++|+||||||.+++.
T Consensus 80 ~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~l~GhSmGg~i~~~ 158 (332)
T TIGR01607 80 LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKE-NRLPMYIIGLSMGGNIALR 158 (332)
T ss_pred ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhcccccccccccccccccccc-CCCceeEeeccCccHHHHH
Confidence 999999999864 233347999999999999987652 11 1458999999999999999
Q ss_pred HHhhcCC-------CCeeEEEEccCccCCCCCC-----chhHHHHHHhhcccccccccccCCCcccccccccChhhHHHh
Q 020630 147 MYFQSEP-------NTWTGLIFSAPLFVIPENM-----KPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVI 214 (323)
Q Consensus 147 ~a~~~p~-------~~v~~~il~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
++..++. ..++++|+++|...+.... ........+...+..+.+...... ......++......
T Consensus 159 ~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~----~~~~~~~~~~~~~~ 234 (332)
T TIGR01607 159 LLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISK----KIRYEKSPYVNDII 234 (332)
T ss_pred HHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccC----ccccccChhhhhHH
Confidence 9876532 1389999999876542211 011111122222222222221110 01122334455566
Q ss_pred hcCCcccCCCCCchhHHHHHHhhHHHHhcCCcc--cccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCcccc
Q 020630 215 ASNPRRYTGKPRVGTMREIARVCQYIQDNFSKV--TVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLI 292 (323)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 292 (323)
..++..+.......+...+..........+..+ ++|+|+++|++|.+++++.++.+++.+..++++++++++++|.++
T Consensus 235 ~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~ 314 (332)
T TIGR01607 235 KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVIT 314 (332)
T ss_pred hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCc
Confidence 666666655566677777777666555556666 799999999999999999999998887666789999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHH
Q 020630 293 QGEPDENANLVLKDMREWID 312 (323)
Q Consensus 293 ~~~~~~~~~~~~~~i~~fl~ 312 (323)
.+. ..+++.+.+.+||+
T Consensus 315 ~E~---~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 315 IEP---GNEEVLKKIIEWIS 331 (332)
T ss_pred cCC---CHHHHHHHHHHHhh
Confidence 543 25779999999985
No 16
>PRK03204 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=4.7e-33 Score=218.04 Aligned_cols=256 Identities=13% Similarity=0.163 Sum_probs=158.9
Q ss_pred CccceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCC
Q 020630 28 VRNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGD 106 (323)
Q Consensus 28 ~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~ 106 (323)
++.+..+++. +| +++|...+. +++|||+||++.+.. .|..+.+.|.+ +|+|+++|+||||.|+.+....++
T Consensus 12 ~~~~~~~~~~-~~~~i~y~~~G~-----~~~iv~lHG~~~~~~-~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~ 83 (286)
T PRK03204 12 YPFESRWFDS-SRGRIHYIDEGT-----GPPILLCHGNPTWSF-LYRDIIVALRD-RFRCVAPDYLGFGLSERPSGFGYQ 83 (286)
T ss_pred ccccceEEEc-CCcEEEEEECCC-----CCEEEEECCCCccHH-HHHHHHHHHhC-CcEEEEECCCCCCCCCCCCccccC
Confidence 3344555555 55 898887663 578999999987655 78999999976 599999999999999866544468
Q ss_pred hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhc--
Q 020630 107 MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGL-- 184 (323)
Q Consensus 107 ~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~-- 184 (323)
.+++++++.++++.+..+ +++++||||||.+++.++..+|++ |+++|++++........... ........
T Consensus 84 ~~~~~~~~~~~~~~~~~~------~~~lvG~S~Gg~va~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (286)
T PRK03204 84 IDEHARVIGEFVDHLGLD------RYLSMGQDWGGPISMAVAVERADR-VRGVVLGNTWFWPADTLAMK-AFSRVMSSPP 155 (286)
T ss_pred HHHHHHHHHHHHHHhCCC------CEEEEEECccHHHHHHHHHhChhh-eeEEEEECccccCCCchhHH-HHHHHhcccc
Confidence 899999999999987643 899999999999999999999999 99999987754221111110 00000000
Q ss_pred -ccccccccccCCCcccccc----cccChhhHHHhhcCCcccCCCCCchhHHHH-------HHhhHHHHhcCCc--cccc
Q 020630 185 -LFGLADTWAAMPDNKMVGK----AIKDPEKLKVIASNPRRYTGKPRVGTMREI-------ARVCQYIQDNFSK--VTVP 250 (323)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~P 250 (323)
...+.. .......+... ......... +.. .............. ..........+.. +++|
T Consensus 156 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 229 (286)
T PRK03204 156 VQYAILR--RNFFVERLIPAGTEHRPSSAVMAH-YRA---VQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKP 229 (286)
T ss_pred chhhhhh--hhHHHHHhccccccCCCCHHHHHH-hcC---CCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCC
Confidence 000000 00000000000 000000000 000 00000000000000 0000111111111 2899
Q ss_pred EEEEeeCCCcccCch-hHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHH
Q 020630 251 FLTVHGTADGVTCPT-SSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWI 311 (323)
Q Consensus 251 ~l~i~g~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl 311 (323)
+++|+|++|.++++. ..+.+.+.+ ++.++++++++||++++++| +++.+.|.+||
T Consensus 230 tliI~G~~D~~~~~~~~~~~~~~~i--p~~~~~~i~~aGH~~~~e~P----e~~~~~i~~~~ 285 (286)
T PRK03204 230 TLLVWGMKDVAFRPKTILPRLRATF--PDHVLVELPNAKHFIQEDAP----DRIAAAIIERF 285 (286)
T ss_pred eEEEecCCCcccCcHHHHHHHHHhc--CCCeEEEcCCCcccccccCH----HHHHHHHHHhc
Confidence 999999999988665 467788888 78999999999999997666 66888888886
No 17
>PRK10673 acyl-CoA esterase; Provisional
Probab=100.00 E-value=8.1e-33 Score=214.75 Aligned_cols=253 Identities=13% Similarity=0.122 Sum_probs=163.1
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~ 120 (323)
+++|+.+++.+...+|+|||+||++++.. .|..++..|.+ +|+|+++|+||||.|..... ++++++++|+.++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~iv~lhG~~~~~~-~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~~--~~~~~~~~d~~~~l~~ 77 (255)
T PRK10673 2 KLNIRAQTAQNPHNNSPIVLVHGLFGSLD-NLGVLARDLVN-DHDIIQVDMRNHGLSPRDPV--MNYPAMAQDLLDTLDA 77 (255)
T ss_pred cceeeeccCCCCCCCCCEEEECCCCCchh-HHHHHHHHHhh-CCeEEEECCCCCCCCCCCCC--CCHHHHHHHHHHHHHH
Confidence 35677776665566899999999998877 88899999976 59999999999999986544 4899999999999999
Q ss_pred HHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCccc
Q 020630 121 VRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKM 200 (323)
Q Consensus 121 l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (323)
+..+ +++++||||||.+++.+|.++|++ |+++|++++............................. .....
T Consensus 78 l~~~------~~~lvGhS~Gg~va~~~a~~~~~~-v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 148 (255)
T PRK10673 78 LQIE------KATFIGHSMGGKAVMALTALAPDR-IDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQ--QAAAI 148 (255)
T ss_pred cCCC------ceEEEEECHHHHHHHHHHHhCHhh-cceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHH--HHHHH
Confidence 8643 799999999999999999999998 99999987533221110000000000000000000000 00000
Q ss_pred ccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCc
Q 020630 201 VGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKS 280 (323)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~ 280 (323)
.................................+.... ..+.++++++|+|+|+|++|..++.+..+.+.+.+ ++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~--~~~~ 225 (255)
T PRK10673 149 MRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIV-GWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQF--PQAR 225 (255)
T ss_pred HHHhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHh-CCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhC--CCcE
Confidence 00011111111111110000000000000111111110 12346778999999999999999999999998888 7899
Q ss_pred EEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 281 IKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 281 ~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+.+++++||+.++++| +++.+.+.+||.+
T Consensus 226 ~~~~~~~gH~~~~~~p----~~~~~~l~~fl~~ 254 (255)
T PRK10673 226 AHVIAGAGHWVHAEKP----DAVLRAIRRYLND 254 (255)
T ss_pred EEEeCCCCCeeeccCH----HHHHHHHHHHHhc
Confidence 9999999999996555 6688999999875
No 18
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=2.6e-32 Score=220.24 Aligned_cols=262 Identities=18% Similarity=0.252 Sum_probs=163.3
Q ss_pred EEecCCC-cEEEEEecCCC-CCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHH
Q 020630 34 YFETPNG-KLFTQSFLPLD-QKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVA 111 (323)
Q Consensus 34 ~~~~~~g-~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~ 111 (323)
++...+. +++|...++.+ ...+|+|||+||++++.. .|..+++.|.+ +|+|+++|+||||.|+.+....+++++++
T Consensus 65 ~~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~-~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~~~~~a 142 (360)
T PLN02679 65 KWKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASIP-HWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYTMETWA 142 (360)
T ss_pred eEEECCceeEEEEEecCcccCCCCCeEEEECCCCCCHH-HHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCccccHHHHH
Confidence 3444455 89998887641 113589999999998876 89999999977 69999999999999987654456899999
Q ss_pred hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh-cCCCCeeEEEEccCccCCCCCC-chhHHHHHH------hh
Q 020630 112 ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ-SEPNTWTGLIFSAPLFVIPENM-KPSKLHLFM------YG 183 (323)
Q Consensus 112 ~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~-~p~~~v~~~il~~~~~~~~~~~-~~~~~~~~~------~~ 183 (323)
+++.++++.+..+ +++|+||||||.+++.++.. +|++ |+++|++++........ ...+..... ..
T Consensus 143 ~~l~~~l~~l~~~------~~~lvGhS~Gg~ia~~~a~~~~P~r-V~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (360)
T PLN02679 143 ELILDFLEEVVQK------PTVLIGNSVGSLACVIAASESTRDL-VRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLID 215 (360)
T ss_pred HHHHHHHHHhcCC------CeEEEEECHHHHHHHHHHHhcChhh-cCEEEEECCccccccccccchHHHhhhcchHHHHH
Confidence 9999999988654 89999999999999998874 6888 99999999865332111 011110000 00
Q ss_pred cccc---ccccc-ccCCCcccc----cccc-----cChhhHHHhhcCCcccCCCCCchhHHHHHHh--hHHHHhcCCccc
Q 020630 184 LLFG---LADTW-AAMPDNKMV----GKAI-----KDPEKLKVIASNPRRYTGKPRVGTMREIARV--CQYIQDNFSKVT 248 (323)
Q Consensus 184 ~~~~---~~~~~-~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 248 (323)
.+.. ..... ........+ .... ..+........ ..........+...... ..+....+.+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 292 (360)
T PLN02679 216 FLLKQRGIASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRG---PADDEGALDAFVSIVTGPPGPNPIKLIPRIS 292 (360)
T ss_pred HHhhchhhHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHh---hccCCChHHHHHHHHhcCCCCCHHHHhhhcC
Confidence 0000 00000 000000000 0000 00001111000 00000011111111110 001234567889
Q ss_pred ccEEEEeeCCCcccCchhH-----HHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 249 VPFLTVHGTADGVTCPTSS-----KLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 249 ~P~l~i~g~~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+|+|+|+|++|.++|++.. ..+.+.+ +++++++++++||++++++| +++++.|.+||++
T Consensus 293 ~PtLii~G~~D~~~p~~~~~~~~~~~l~~~i--p~~~l~~i~~aGH~~~~E~P----e~~~~~I~~FL~~ 356 (360)
T PLN02679 293 LPILVLWGDQDPFTPLDGPVGKYFSSLPSQL--PNVTLYVLEGVGHCPHDDRP----DLVHEKLLPWLAQ 356 (360)
T ss_pred CCEEEEEeCCCCCcCchhhHHHHHHhhhccC--CceEEEEcCCCCCCccccCH----HHHHHHHHHHHHh
Confidence 9999999999999988642 2344445 78999999999999996555 6799999999975
No 19
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=100.00 E-value=5.4e-32 Score=210.68 Aligned_cols=248 Identities=12% Similarity=0.126 Sum_probs=162.2
Q ss_pred EEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHH
Q 020630 42 LFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHV 121 (323)
Q Consensus 42 l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l 121 (323)
++|..++++. ..+|+|||+||++++.. .|..+++.|.+ ||+|+++|+||||.|.......++++++++++.++++.+
T Consensus 1 ~~~~~~~~~~-~~~~~iv~lhG~~~~~~-~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~ 77 (257)
T TIGR03611 1 MHYELHGPPD-ADAPVVVLSSGLGGSGS-YWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDAL 77 (257)
T ss_pred CEEEEecCCC-CCCCEEEEEcCCCcchh-HHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHh
Confidence 4677887643 44789999999999877 78888888865 699999999999999876555568999999999999988
Q ss_pred HhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccccccc-cccc-----C
Q 020630 122 RHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLAD-TWAA-----M 195 (323)
Q Consensus 122 ~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~ 195 (323)
+.. +++++||||||.+++.++.++|+. |+++|++++........... .......+..... .+.. .
T Consensus 78 ~~~------~~~l~G~S~Gg~~a~~~a~~~~~~-v~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 148 (257)
T TIGR03611 78 NIE------RFHFVGHALGGLIGLQLALRYPER-LLSLVLINAWSRPDPHTRRC--FDVRIALLQHAGPEAYVHAQALFL 148 (257)
T ss_pred CCC------cEEEEEechhHHHHHHHHHHChHH-hHHheeecCCCCCChhHHHH--HHHHHHHHhccCcchhhhhhhhhh
Confidence 643 899999999999999999999988 99999998765432211110 0000011000000 0000 0
Q ss_pred CCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHh--hHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHH
Q 020630 196 PDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARV--CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEK 273 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~ 273 (323)
.......... .............+. ........... ..+....+.++++|+++++|++|.++|++.++.+.+.
T Consensus 149 ~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~ 223 (257)
T TIGR03611 149 YPADWISENA--ARLAADEAHALAHFP---GKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAA 223 (257)
T ss_pred ccccHhhccc--hhhhhhhhhcccccC---ccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHh
Confidence 0000000000 000000000000000 00000100000 0112345678899999999999999999999999988
Q ss_pred hcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 274 ASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 274 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
+ ++++++.++++||..++++| +++.+.|.+||+
T Consensus 224 ~--~~~~~~~~~~~gH~~~~~~~----~~~~~~i~~fl~ 256 (257)
T TIGR03611 224 L--PNAQLKLLPYGGHASNVTDP----ETFNRALLDFLK 256 (257)
T ss_pred c--CCceEEEECCCCCCccccCH----HHHHHHHHHHhc
Confidence 8 77899999999999996555 668888999885
No 20
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=100.00 E-value=1.8e-31 Score=210.12 Aligned_cols=257 Identities=16% Similarity=0.191 Sum_probs=165.5
Q ss_pred EEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHh
Q 020630 34 YFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAA 112 (323)
Q Consensus 34 ~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~ 112 (323)
.+...+| +++|...++.+ +++|||+||++++.. .|..+.+.|++ +|+|+++|+||||.|..+....++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~g~~~---~~~vv~~hG~~~~~~-~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~ 83 (278)
T TIGR03056 9 RRVTVGPFHWHVQDMGPTA---GPLLLLLHGTGASTH-SWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAE 83 (278)
T ss_pred ceeeECCEEEEEEecCCCC---CCeEEEEcCCCCCHH-HHHHHHHHHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHH
Confidence 3445577 99998887644 689999999998876 88999999976 599999999999999876554568999999
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcc--ccccc
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLL--FGLAD 190 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 190 (323)
|+.++++.+..+ +++|+||||||.+++.+|.++|++ ++++|++++.......... .....+.... .....
T Consensus 84 ~l~~~i~~~~~~------~~~lvG~S~Gg~~a~~~a~~~p~~-v~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 155 (278)
T TIGR03056 84 DLSALCAAEGLS------PDGVIGHSAGAAIALRLALDGPVT-PRMVVGINAALMPFEGMAG-TLFPYMARVLACNPFTP 155 (278)
T ss_pred HHHHHHHHcCCC------CceEEEECccHHHHHHHHHhCCcc-cceEEEEcCcccccccccc-cccchhhHhhhhcccch
Confidence 999999887643 789999999999999999999998 9999998875432211100 0000000000 00000
Q ss_pred cccc--CCCccccccccc------ChhhHHHhhcCCcccCCCCCchhHHHHHHh--hHHHHhcCCcccccEEEEeeCCCc
Q 020630 191 TWAA--MPDNKMVGKAIK------DPEKLKVIASNPRRYTGKPRVGTMREIARV--CQYIQDNFSKVTVPFLTVHGTADG 260 (323)
Q Consensus 191 ~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~i~g~~D~ 260 (323)
.... ............ ........... ................ .......++++++|+++|+|++|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~ 232 (278)
T TIGR03056 156 PMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRL---IRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDK 232 (278)
T ss_pred HHHHhhcccCcchhHHhhccccccccchhhHHHHh---hcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCc
Confidence 0000 000000000000 00000000000 0000000000000000 011234567889999999999999
Q ss_pred ccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 261 VTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
++|.+.++.+.+.+ +++++++++++||++++++| +++.+.|.+|++
T Consensus 233 ~vp~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~p----~~~~~~i~~f~~ 278 (278)
T TIGR03056 233 AVPPDESKRAATRV--PTATLHVVPGGGHLVHEEQA----DGVVGLILQAAE 278 (278)
T ss_pred ccCHHHHHHHHHhc--cCCeEEEECCCCCcccccCH----HHHHHHHHHHhC
Confidence 99999999998887 77899999999999996555 668899998873
No 21
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=100.00 E-value=6e-31 Score=210.89 Aligned_cols=257 Identities=13% Similarity=0.106 Sum_probs=164.5
Q ss_pred eEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC---CCCChH
Q 020630 33 EYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC---YLGDME 108 (323)
Q Consensus 33 ~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~---~~~~~~ 108 (323)
......+| +++|...++.+ +++|||+||++++.. .|..+++.|++ +|+|+++|+||||.|+.+.. ..++++
T Consensus 107 ~~~~~~~~~~~~y~~~G~~~---~~~ivllHG~~~~~~-~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~ 181 (383)
T PLN03084 107 QSQASSDLFRWFCVESGSNN---NPPVLLIHGFPSQAY-SYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLD 181 (383)
T ss_pred eeEEcCCceEEEEEecCCCC---CCeEEEECCCCCCHH-HHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHH
Confidence 34456778 99988887644 689999999998766 89999999976 69999999999999987643 246899
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcc-cc
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLL-FG 187 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~ 187 (323)
++++++.++++.+..+ +++|+|||+||.+++.+|..+|++ |+++|++++............ ...+...+ ..
T Consensus 182 ~~a~~l~~~i~~l~~~------~~~LvG~s~GG~ia~~~a~~~P~~-v~~lILi~~~~~~~~~~~p~~-l~~~~~~l~~~ 253 (383)
T PLN03084 182 EYVSSLESLIDELKSD------KVSLVVQGYFSPPVVKYASAHPDK-IKKLILLNPPLTKEHAKLPST-LSEFSNFLLGE 253 (383)
T ss_pred HHHHHHHHHHHHhCCC------CceEEEECHHHHHHHHHHHhChHh-hcEEEEECCCCccccccchHH-HHHHHHHHhhh
Confidence 9999999999999754 899999999999999999999999 999999998753221101111 11010000 00
Q ss_pred cccccccCCCcccccc---cccChhhHHHhhcCCcccCCCCCch-hHHHHHHhh--------HHHHhc--CCcccccEEE
Q 020630 188 LADTWAAMPDNKMVGK---AIKDPEKLKVIASNPRRYTGKPRVG-TMREIARVC--------QYIQDN--FSKVTVPFLT 253 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~--~~~~~~P~l~ 253 (323)
+............+.. ..........+. .+ +....... ....+.+.. ...... ..++++|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~--~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLi 330 (383)
T PLN03084 254 IFSQDPLRASDKALTSCGPYAMKEDDAMVYR-RP--YLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITV 330 (383)
T ss_pred hhhcchHHHHhhhhcccCccCCCHHHHHHHh-cc--ccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEE
Confidence 0000000000000000 000000000110 00 00000000 001111110 011111 1457999999
Q ss_pred EeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 254 VHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 254 i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
|+|++|.+++.+.++.+.+.. +.++.+++++||+++.++| +++++.|.+|+.
T Consensus 331 I~G~~D~~v~~~~~~~~a~~~---~a~l~vIp~aGH~~~~E~P----e~v~~~I~~Fl~ 382 (383)
T PLN03084 331 CWGLRDRWLNYDGVEDFCKSS---QHKLIELPMAGHHVQEDCG----EELGGIISGILS 382 (383)
T ss_pred EeeCCCCCcCHHHHHHHHHhc---CCeEEEECCCCCCcchhCH----HHHHHHHHHHhh
Confidence 999999999998888777753 6799999999999995544 678899999885
No 22
>PRK10349 carboxylesterase BioH; Provisional
Probab=100.00 E-value=4e-32 Score=210.60 Aligned_cols=239 Identities=16% Similarity=0.197 Sum_probs=148.9
Q ss_pred EEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHH
Q 020630 42 LFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHV 121 (323)
Q Consensus 42 l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l 121 (323)
++|..+|. ..|+|||+||++++.. .|..+.+.|.++ |+|+++|+||||.|..... ++++++++++.+ +
T Consensus 4 ~~y~~~G~----g~~~ivllHG~~~~~~-~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~~--~~~~~~~~~l~~----~ 71 (256)
T PRK10349 4 IWWQTKGQ----GNVHLVLLHGWGLNAE-VWRCIDEELSSH-FTLHLVDLPGFGRSRGFGA--LSLADMAEAVLQ----Q 71 (256)
T ss_pred cchhhcCC----CCCeEEEECCCCCChh-HHHHHHHHHhcC-CEEEEecCCCCCCCCCCCC--CCHHHHHHHHHh----c
Confidence 45555542 1357999999998877 899999999875 9999999999999976432 467776666553 2
Q ss_pred HhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCc-hh---HHHHHHhhcccccccccccCCC
Q 020630 122 RHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMK-PS---KLHLFMYGLLFGLADTWAAMPD 197 (323)
Q Consensus 122 ~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~ 197 (323)
. .++++++||||||.+|+.+|.++|++ |+++|++++......... .. .....+...+....... .
T Consensus 72 ~------~~~~~lvGhS~Gg~ia~~~a~~~p~~-v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 140 (256)
T PRK10349 72 A------PDKAIWLGWSLGGLVASQIALTHPER-VQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRT----V 140 (256)
T ss_pred C------CCCeEEEEECHHHHHHHHHHHhChHh-hheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHH----H
Confidence 2 33899999999999999999999999 999999987543221100 00 00001100000000000 0
Q ss_pred cccccc-cccC----hhhHHHhhcCCcccCCCCCchhHH---HHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHH
Q 020630 198 NKMVGK-AIKD----PEKLKVIASNPRRYTGKPRVGTMR---EIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKL 269 (323)
Q Consensus 198 ~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~ 269 (323)
..++.. .... .......... .. .......... .... ..+....+.++++|+|+++|++|.++|.+.++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~ 217 (256)
T PRK10349 141 ERFLALQTMGTETARQDARALKKTV-LA-LPMPEVDVLNGGLEILK-TVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPM 217 (256)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHh-hc-cCCCcHHHHHHHHHHHH-hCccHHHHhhcCCCeEEEecCCCccCCHHHHHH
Confidence 000000 0000 0000000000 00 0000011111 1111 112345678899999999999999999998888
Q ss_pred HHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 270 LYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
+.+.+ +++++++++++||++++++| +.+.+.+.+|-+
T Consensus 218 ~~~~i--~~~~~~~i~~~gH~~~~e~p----~~f~~~l~~~~~ 254 (256)
T PRK10349 218 LDKLW--PHSESYIFAKAAHAPFISHP----AEFCHLLVALKQ 254 (256)
T ss_pred HHHhC--CCCeEEEeCCCCCCccccCH----HHHHHHHHHHhc
Confidence 88888 78999999999999997666 668888887743
No 23
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=100.00 E-value=1.3e-31 Score=211.16 Aligned_cols=248 Identities=16% Similarity=0.149 Sum_probs=150.9
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHH---HHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQK---ICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSF 117 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~---~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~ 117 (323)
+++|...+ .+|+|||+||++++.. .|.. .+..|.+.||+|+++|+||||.|+............++++.++
T Consensus 21 ~~~y~~~g-----~~~~ivllHG~~~~~~-~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 94 (282)
T TIGR03343 21 RIHYNEAG-----NGEAVIMLHGGGPGAG-GWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGL 94 (282)
T ss_pred eEEEEecC-----CCCeEEEECCCCCchh-hHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHH
Confidence 56666554 2568999999987754 4543 3455666789999999999999986532111222467889999
Q ss_pred HHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCC--chhHHHHHHhhccccc-cccccc
Q 020630 118 FKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENM--KPSKLHLFMYGLLFGL-ADTWAA 194 (323)
Q Consensus 118 i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~ 194 (323)
++.+..+ +++++||||||.+++.+|.++|++ |+++|++++........ ................ ......
T Consensus 95 l~~l~~~------~~~lvG~S~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (282)
T TIGR03343 95 MDALDIE------KAHLVGNSMGGATALNFALEYPDR-IGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQ 167 (282)
T ss_pred HHHcCCC------CeeEEEECchHHHHHHHHHhChHh-hceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHH
Confidence 9988654 899999999999999999999999 99999998753211100 0000001111000000 000000
Q ss_pred CCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHH-------hhHHHHhcCCcccccEEEEeeCCCcccCchhH
Q 020630 195 MPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIAR-------VCQYIQDNFSKVTVPFLTVHGTADGVTCPTSS 267 (323)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~ 267 (323)
........................ ... ......+.. ...+....+.++++|+|+++|++|.+++++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~ 242 (282)
T TIGR03343 168 MLNVFLFDQSLITEELLQGRWENI---QRQ--PEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHG 242 (282)
T ss_pred HHhhCccCcccCcHHHHHhHHHHh---hcC--HHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhH
Confidence 000000000000000000000000 000 000000000 00112345678999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 268 KLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
+.+.+.+ +++++++++++||+++.++| +.+.+.|.+|+.
T Consensus 243 ~~~~~~~--~~~~~~~i~~agH~~~~e~p----~~~~~~i~~fl~ 281 (282)
T TIGR03343 243 LKLLWNM--PDAQLHVFSRCGHWAQWEHA----DAFNRLVIDFLR 281 (282)
T ss_pred HHHHHhC--CCCEEEEeCCCCcCCcccCH----HHHHHHHHHHhh
Confidence 9999988 78999999999999996666 668899999985
No 24
>PRK06489 hypothetical protein; Provisional
Probab=100.00 E-value=6e-31 Score=212.81 Aligned_cols=260 Identities=12% Similarity=0.125 Sum_probs=156.9
Q ss_pred CCC-cEEEEEecCCCC----CCceEEEEecCCCCCcchhhH--HHHHHH-------hcCCcEEEEeccccCcCCCCCCCC
Q 020630 38 PNG-KLFTQSFLPLDQ----KVKATVYMTHGYGSDTGWMFQ--KICISY-------ATWGYAVFAADLLGHGRSDGIRCY 103 (323)
Q Consensus 38 ~~g-~l~~~~~~~~~~----~~~~~vv~~hG~~~~~~~~~~--~~~~~l-------~~~g~~vi~~d~~G~G~s~~~~~~ 103 (323)
.+| +++|..+|+... +.+|+|||+||++++.. .|. .+.+.| ..++|+|+++|+||||.|+.+...
T Consensus 47 ~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~ 125 (360)
T PRK06489 47 LPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGK-SFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDG 125 (360)
T ss_pred cCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchh-hhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcC
Confidence 567 999998875310 11578999999998865 443 454444 134699999999999999865321
Q ss_pred ------CCChHHHHhhHHHHH-HHHHhhCCCCCCCEE-EEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchh
Q 020630 104 ------LGDMEKVAASSLSFF-KHVRHSEPYRDLPAF-LFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPS 175 (323)
Q Consensus 104 ------~~~~~~~~~d~~~~i-~~l~~~~~~~~~~~~-l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~ 175 (323)
.++++++++++.+++ +.++.+ +++ ++||||||.+|+.+|.++|++ |+++|++++....... ..
T Consensus 126 ~~~~~~~~~~~~~a~~~~~~l~~~lgi~------~~~~lvG~SmGG~vAl~~A~~~P~~-V~~LVLi~s~~~~~~~--~~ 196 (360)
T PRK06489 126 LRAAFPRYDYDDMVEAQYRLVTEGLGVK------HLRLILGTSMGGMHAWMWGEKYPDF-MDALMPMASQPTEMSG--RN 196 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHhcCCC------ceeEEEEECHHHHHHHHHHHhCchh-hheeeeeccCcccccH--HH
Confidence 357889998887754 667644 665 899999999999999999999 9999999875421111 11
Q ss_pred HHHHH-Hhhcccc---ccc-ccccCCC--cccc---------------cccccChhhHHHhhcCCcccCCCCCchhHHHH
Q 020630 176 KLHLF-MYGLLFG---LAD-TWAAMPD--NKMV---------------GKAIKDPEKLKVIASNPRRYTGKPRVGTMREI 233 (323)
Q Consensus 176 ~~~~~-~~~~~~~---~~~-~~~~~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (323)
+.... ....... +.. ....... .... ...................... .....+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 275 (360)
T PRK06489 197 WMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVT-ADANDFLYQ 275 (360)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhh-cCHHHHHHH
Confidence 10000 0000000 000 0000000 0000 0000000000000000000000 001111111
Q ss_pred HHh--hHHHHhcCCcccccEEEEeeCCCcccCchhH--HHHHHHhcCCCCcEEEecCC----CccccccCCchhHHHHHH
Q 020630 234 ARV--CQYIQDNFSKVTVPFLTVHGTADGVTCPTSS--KLLYEKASSADKSIKIYDGM----YHSLIQGEPDENANLVLK 305 (323)
Q Consensus 234 ~~~--~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~ 305 (323)
... ..+..+.+.+|++|+|+|+|++|.++|++.+ +.+.+.+ +++++++++++ ||..+ ++| +++.+
T Consensus 276 ~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~i--p~a~l~~i~~a~~~~GH~~~-e~P----~~~~~ 348 (360)
T PRK06489 276 WDSSRDYNPSPDLEKIKAPVLAINSADDERNPPETGVMEAALKRV--KHGRLVLIPASPETRGHGTT-GSA----KFWKA 348 (360)
T ss_pred HHHhhccChHHHHHhCCCCEEEEecCCCcccChhhHHHHHHHHhC--cCCeEEEECCCCCCCCcccc-cCH----HHHHH
Confidence 111 1113456788999999999999999998875 7788888 78999999996 99986 555 66999
Q ss_pred HHHHHHHHHH
Q 020630 306 DMREWIDERV 315 (323)
Q Consensus 306 ~i~~fl~~~~ 315 (323)
.|.+||++..
T Consensus 349 ~i~~FL~~~~ 358 (360)
T PRK06489 349 YLAEFLAQVP 358 (360)
T ss_pred HHHHHHHhcc
Confidence 9999997654
No 25
>PLN02578 hydrolase
Probab=99.98 E-value=1.4e-30 Score=210.12 Aligned_cols=254 Identities=19% Similarity=0.187 Sum_probs=162.3
Q ss_pred EEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHh
Q 020630 34 YFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAA 112 (323)
Q Consensus 34 ~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~ 112 (323)
.+.+.+| +++|...+. +++|||+||++++.. .|..+.+.|++ +|+|+++|+||||.|+.+.. .++.+.+++
T Consensus 69 ~~~~~~~~~i~Y~~~g~-----g~~vvliHG~~~~~~-~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~-~~~~~~~a~ 140 (354)
T PLN02578 69 NFWTWRGHKIHYVVQGE-----GLPIVLIHGFGASAF-HWRYNIPELAK-KYKVYALDLLGFGWSDKALI-EYDAMVWRD 140 (354)
T ss_pred eEEEECCEEEEEEEcCC-----CCeEEEECCCCCCHH-HHHHHHHHHhc-CCEEEEECCCCCCCCCCccc-ccCHHHHHH
Confidence 3334567 888887652 568999999998866 88888999976 59999999999999987643 358889999
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCch---------hH----HHH
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKP---------SK----LHL 179 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~---------~~----~~~ 179 (323)
++.++++.+..+ +++++|||+||.+++.+|.++|++ |+++|++++.......... .. ...
T Consensus 141 ~l~~~i~~~~~~------~~~lvG~S~Gg~ia~~~A~~~p~~-v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (354)
T PLN02578 141 QVADFVKEVVKE------PAVLVGNSLGGFTALSTAVGYPEL-VAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVK 213 (354)
T ss_pred HHHHHHHHhccC------CeEEEEECHHHHHHHHHHHhChHh-cceEEEECCCccccccccccccccccccchhhHHHhH
Confidence 999999988743 899999999999999999999999 9999999875432211100 00 000
Q ss_pred HHhhcccccccccc--cCCCcc----ccccccc-----ChhhHHHhhcCCcccCCCCCchhHHHHHHh------hHHHHh
Q 020630 180 FMYGLLFGLADTWA--AMPDNK----MVGKAIK-----DPEKLKVIASNPRRYTGKPRVGTMREIARV------CQYIQD 242 (323)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 242 (323)
............+. ...... ....... +......... ................. .....+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (354)
T PLN02578 214 PLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESITE---PAADPNAGEVYYRLMSRFLFNQSRYTLDS 290 (354)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHHHh---cccCCchHHHHHHHHHHHhcCCCCCCHHH
Confidence 00000000000000 000000 0000000 0000000000 00000001111111110 011234
Q ss_pred cCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 243 NFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 243 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
.+.++++|+++|+|++|.+++.+.++.+.+.+ ++.+++++ ++||+++.++| +++.+.|.+|++
T Consensus 291 ~l~~i~~PvLiI~G~~D~~v~~~~~~~l~~~~--p~a~l~~i-~~GH~~~~e~p----~~~~~~I~~fl~ 353 (354)
T PLN02578 291 LLSKLSCPLLLLWGDLDPWVGPAKAEKIKAFY--PDTTLVNL-QAGHCPHDEVP----EQVNKALLEWLS 353 (354)
T ss_pred HhhcCCCCEEEEEeCCCCCCCHHHHHHHHHhC--CCCEEEEe-CCCCCccccCH----HHHHHHHHHHHh
Confidence 56788999999999999999999999999988 77889888 58999996666 668889999985
No 26
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.98 E-value=8.1e-31 Score=183.81 Aligned_cols=228 Identities=15% Similarity=0.209 Sum_probs=169.1
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
+.+|+|+||+.++.. ..+.++++|.++||.|.++.+||||......-. .+.++|.+++.+..++|.... ...|.+
T Consensus 15 ~~AVLllHGFTGt~~-Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~-t~~~DW~~~v~d~Y~~L~~~g---y~eI~v 89 (243)
T COG1647 15 NRAVLLLHGFTGTPR-DVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLK-TTPRDWWEDVEDGYRDLKEAG---YDEIAV 89 (243)
T ss_pred CEEEEEEeccCCCcH-HHHHHHHHHHHCCceEecCCCCCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHHcC---CCeEEE
Confidence 579999999999988 889999999999999999999999987633222 379999999999999998543 448999
Q ss_pred EEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHh
Q 020630 135 FGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVI 214 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
+|.||||.+++.+|.++| ++++|.+|++......... +..+........ ... ....+.....+
T Consensus 90 ~GlSmGGv~alkla~~~p---~K~iv~m~a~~~~k~~~~i---ie~~l~y~~~~k-k~e----------~k~~e~~~~e~ 152 (243)
T COG1647 90 VGLSMGGVFALKLAYHYP---PKKIVPMCAPVNVKSWRII---IEGLLEYFRNAK-KYE----------GKDQEQIDKEM 152 (243)
T ss_pred EeecchhHHHHHHHhhCC---ccceeeecCCcccccchhh---hHHHHHHHHHhh-hcc----------CCCHHHHHHHH
Confidence 999999999999999988 7899998887664332211 111111111000 000 00001111111
Q ss_pred hcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCcccccc
Q 020630 215 ASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQG 294 (323)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 294 (323)
. .+. .........+....+.....+..|..|++++.|.+|..+|.+.+..+++.+.+...++.+++++||.+..
T Consensus 153 ~----~~~-~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~KeL~~~e~SgHVIt~- 226 (243)
T COG1647 153 K----SYK-DTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGHVITL- 226 (243)
T ss_pred H----Hhh-cchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCCcceeEEEccCCceeec-
Confidence 1 111 1122344556666667778889999999999999999999999999999997778899999999999985
Q ss_pred CCchhHHHHHHHHHHHHH
Q 020630 295 EPDENANLVLKDMREWID 312 (323)
Q Consensus 295 ~~~~~~~~~~~~i~~fl~ 312 (323)
+...+++.+.+..||+
T Consensus 227 --D~Erd~v~e~V~~FL~ 242 (243)
T COG1647 227 --DKERDQVEEDVITFLE 242 (243)
T ss_pred --chhHHHHHHHHHHHhh
Confidence 5557889999999986
No 27
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.97 E-value=9.3e-31 Score=196.82 Aligned_cols=276 Identities=18% Similarity=0.213 Sum_probs=161.8
Q ss_pred ccccCCccceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCC
Q 020630 23 YTSQGVRNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIR 101 (323)
Q Consensus 23 ~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~ 101 (323)
.....+++...++...++ .+......+.. ..+.++|++||+|++.. .|-.-.+.|++ .++|+++|++|+|.|+.+.
T Consensus 58 l~~~~v~~~~~~v~i~~~~~iw~~~~~~~~-~~~~plVliHGyGAg~g-~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~ 134 (365)
T KOG4409|consen 58 LSSVPVPYSKKYVRIPNGIEIWTITVSNES-ANKTPLVLIHGYGAGLG-LFFRNFDDLAK-IRNVYAIDLLGFGRSSRPK 134 (365)
T ss_pred hhhcCCCcceeeeecCCCceeEEEeecccc-cCCCcEEEEeccchhHH-HHHHhhhhhhh-cCceEEecccCCCCCCCCC
Confidence 344566667777777777 66555555543 66889999999998877 66666778887 5999999999999999775
Q ss_pred CCCC---ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCC-Cch---
Q 020630 102 CYLG---DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPEN-MKP--- 174 (323)
Q Consensus 102 ~~~~---~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~-~~~--- 174 (323)
-... ....+++-++++....+. .+.+|+|||+||++|..||.+||++ |+.+||++|+...... ...
T Consensus 135 F~~d~~~~e~~fvesiE~WR~~~~L------~KmilvGHSfGGYLaa~YAlKyPer-V~kLiLvsP~Gf~~~~~~~~~~~ 207 (365)
T KOG4409|consen 135 FSIDPTTAEKEFVESIEQWRKKMGL------EKMILVGHSFGGYLAAKYALKYPER-VEKLILVSPWGFPEKPDSEPEFT 207 (365)
T ss_pred CCCCcccchHHHHHHHHHHHHHcCC------cceeEeeccchHHHHHHHHHhChHh-hceEEEecccccccCCCcchhhc
Confidence 3321 233444555555554444 3899999999999999999999999 9999999998765432 111
Q ss_pred ---hHHHHHHhhcccccccccccCCCc----cccccc-------ccChhhHHHhhcC-CcccCCCCCchh-HHHHHH---
Q 020630 175 ---SKLHLFMYGLLFGLADTWAAMPDN----KMVGKA-------IKDPEKLKVIASN-PRRYTGKPRVGT-MREIAR--- 235 (323)
Q Consensus 175 ---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--- 235 (323)
......+......+.+........ .+.... +.+....+.+... .......+.-.. +..++.
T Consensus 208 ~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g 287 (365)
T KOG4409|consen 208 KPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGG 287 (365)
T ss_pred CCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccc
Confidence 111111111111111110000000 000000 0000000010000 000011111111 111111
Q ss_pred -hhHHHHhcCCcc--cccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 236 -VCQYIQDNFSKV--TVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 236 -~~~~~~~~~~~~--~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
+...+.+.+..+ +||+++|+|++|.+ +.....++...+....++.++++++||..++++|+ .+++.+.++++
T Consensus 288 ~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D~~~g~~~~~~~~~~~~~~~~v~~aGHhvylDnp~----~Fn~~v~~~~~ 362 (365)
T KOG4409|consen 288 WARRPMIQRLRELKKDVPVTFIYGDRDWM-DKNAGLEVTKSLMKEYVEIIIVPGAGHHVYLDNPE----FFNQIVLEECD 362 (365)
T ss_pred hhhhhHHHHHHhhccCCCEEEEecCcccc-cchhHHHHHHHhhcccceEEEecCCCceeecCCHH----HHHHHHHHHHh
Confidence 112233444444 49999999999965 55556666665444568999999999999987774 46666766665
Q ss_pred H
Q 020630 313 E 313 (323)
Q Consensus 313 ~ 313 (323)
.
T Consensus 363 ~ 363 (365)
T KOG4409|consen 363 K 363 (365)
T ss_pred c
Confidence 3
No 28
>PRK13604 luxD acyl transferase; Provisional
Probab=99.97 E-value=1.5e-29 Score=192.49 Aligned_cols=230 Identities=14% Similarity=0.117 Sum_probs=157.6
Q ss_pred cceeEEecCCC-cEEEEEecCCC--CCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccC-cCCCCCCCCCC
Q 020630 30 NGKEYFETPNG-KLFTQSFLPLD--QKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGH-GRSDGIRCYLG 105 (323)
Q Consensus 30 ~~~~~~~~~~g-~l~~~~~~~~~--~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~-G~s~~~~~~~~ 105 (323)
..++.+.+.|| +|+.+...|.+ ..+.++||++||++.+.. .+..+++.|+++||.|+.+|+||+ |+|++.....
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~-~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~- 86 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMD-HFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEF- 86 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChH-HHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccC-
Confidence 45677889999 99999998863 356789999999999765 689999999999999999999987 9997654322
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcc
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLL 185 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 185 (323)
+......|+.+++++++.+. ..++.|+||||||.+|+.+|... . ++++|+.+|+..+.+.... .+....
T Consensus 87 t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~-v~~lI~~sp~~~l~d~l~~-----~~~~~~ 155 (307)
T PRK13604 87 TMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--D-LSFLITAVGVVNLRDTLER-----ALGYDY 155 (307)
T ss_pred cccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--C-CCEEEEcCCcccHHHHHHH-----hhhccc
Confidence 44445799999999998763 45899999999999997777642 3 8999999998874421111 000000
Q ss_pred cccccccccCCCcc---ccccccc-ChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcc
Q 020630 186 FGLADTWAAMPDNK---MVGKAIK-DPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGV 261 (323)
Q Consensus 186 ~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~ 261 (323)
. .++...... +....+. ..........+.. ......+.++++++|+|+|||+.|.+
T Consensus 156 ~----~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~----------------~~~s~i~~~~~l~~PvLiIHG~~D~l 215 (307)
T PRK13604 156 L----SLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWD----------------TLDSTINKMKGLDIPFIAFTANNDSW 215 (307)
T ss_pred c----cCcccccccccccccccccHHHHHHHHHhcCcc----------------ccccHHHHHhhcCCCEEEEEcCCCCc
Confidence 0 000000000 0000000 0000000000000 00012244566789999999999999
Q ss_pred cCchhHHHHHHHhcCCCCcEEEecCCCcccc
Q 020630 262 TCPTSSKLLYEKASSADKSIKIYDGMYHSLI 292 (323)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 292 (323)
||.+.++.+++.+++.++++++++|++|.+.
T Consensus 216 Vp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 216 VKQSEVIDLLDSIRSEQCKLYSLIGSSHDLG 246 (307)
T ss_pred cCHHHHHHHHHHhccCCcEEEEeCCCccccC
Confidence 9999999999988656799999999999998
No 29
>PRK07581 hypothetical protein; Validated
Probab=99.97 E-value=8.4e-31 Score=210.97 Aligned_cols=260 Identities=10% Similarity=0.028 Sum_probs=154.5
Q ss_pred cCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHH---HHHhcCCcEEEEeccccCcCCCCCCCC--CCChH--
Q 020630 37 TPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKIC---ISYATWGYAVFAADLLGHGRSDGIRCY--LGDME-- 108 (323)
Q Consensus 37 ~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~---~~l~~~g~~vi~~d~~G~G~s~~~~~~--~~~~~-- 108 (323)
+.+| +|+|..+++.+....|+||++||++++.. .|..+. +.|...+|+||++|+||||.|+.+... .++++
T Consensus 22 ~~~~~~l~y~~~G~~~~~~~~~vll~~~~~~~~~-~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~ 100 (339)
T PRK07581 22 TLPDARLAYKTYGTLNAAKDNAILYPTWYSGTHQ-DNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARF 100 (339)
T ss_pred CcCCceEEEEecCccCCCCCCEEEEeCCCCCCcc-cchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCC
Confidence 3456 89999998643223567788888776655 454332 356656799999999999999755321 22333
Q ss_pred ---HHHhhHHH----HHHHHHhhCCCCCCC-EEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHH
Q 020630 109 ---KVAASSLS----FFKHVRHSEPYRDLP-AFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLF 180 (323)
Q Consensus 109 ---~~~~d~~~----~i~~l~~~~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~ 180 (323)
.+++|+.+ +++.++.+ + ++|+||||||++|+.+|.++|++ |+++|++++....... .......
T Consensus 101 ~~~~~~~~~~~~~~~l~~~lgi~------~~~~lvG~S~GG~va~~~a~~~P~~-V~~Lvli~~~~~~~~~--~~~~~~~ 171 (339)
T PRK07581 101 PHVTIYDNVRAQHRLLTEKFGIE------RLALVVGWSMGAQQTYHWAVRYPDM-VERAAPIAGTAKTTPH--NFVFLEG 171 (339)
T ss_pred CceeHHHHHHHHHHHHHHHhCCC------ceEEEEEeCHHHHHHHHHHHHCHHH-HhhheeeecCCCCCHH--HHHHHHH
Confidence 24566655 55667654 7 47999999999999999999999 9999999876542111 0000000
Q ss_pred Hhhccc---cccccccc-CC----------------Cccccccc----cc----ChhhHHHhhcCCcccCCCCCchhHHH
Q 020630 181 MYGLLF---GLADTWAA-MP----------------DNKMVGKA----IK----DPEKLKVIASNPRRYTGKPRVGTMRE 232 (323)
Q Consensus 181 ~~~~~~---~~~~~~~~-~~----------------~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (323)
....+. .+...+.. .+ ...+.... .. .............. ........
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 247 (339)
T PRK07581 172 LKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLP----RDPNNLLA 247 (339)
T ss_pred HHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcc----cCcccHHH
Confidence 000000 00000000 00 00000000 00 00000000000000 00011111
Q ss_pred HHH---------h---hHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecC-CCccccccCCchh
Q 020630 233 IAR---------V---CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDG-MYHSLIQGEPDEN 299 (323)
Q Consensus 233 ~~~---------~---~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~ 299 (323)
... . ..+....+.++++|+|+|+|++|.++|++.++.+.+.+ ++++++++++ +||..++++++
T Consensus 248 ~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~i--p~a~l~~i~~~~GH~~~~~~~~-- 323 (339)
T PRK07581 248 MLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALI--PNAELRPIESIWGHLAGFGQNP-- 323 (339)
T ss_pred HHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhC--CCCeEEEeCCCCCccccccCcH--
Confidence 110 0 01234567789999999999999999999999998888 7899999998 99999987774
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020630 300 ANLVLKDMREWIDERVE 316 (323)
Q Consensus 300 ~~~~~~~i~~fl~~~~~ 316 (323)
.+...|.+||.+.+.
T Consensus 324 --~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 324 --ADIAFIDAALKELLA 338 (339)
T ss_pred --HHHHHHHHHHHHHHh
Confidence 477777777777653
No 30
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.97 E-value=3.7e-30 Score=203.75 Aligned_cols=255 Identities=19% Similarity=0.153 Sum_probs=156.1
Q ss_pred cCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCC--CCChHHHHhh
Q 020630 37 TPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCY--LGDMEKVAAS 113 (323)
Q Consensus 37 ~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~--~~~~~~~~~d 113 (323)
+.+| ++.|...++.+ .+++|||+||++++....|..+...+.+.||+|+++|+||+|.|..+... .++++.++++
T Consensus 8 ~~~~~~~~~~~~~~~~--~~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~ 85 (288)
T TIGR01250 8 TVDGGYHLFTKTGGEG--EKIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDE 85 (288)
T ss_pred cCCCCeEEEEeccCCC--CCCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHH
Confidence 3455 78787776542 36899999998766553667777777666899999999999999865433 2589999999
Q ss_pred HHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccc-ccc--
Q 020630 114 SLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFG-LAD-- 190 (323)
Q Consensus 114 ~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 190 (323)
+.++++.+..+ +++++||||||.+++.+|..+|++ |+++|++++.......... .......+.. ...
T Consensus 86 ~~~~~~~~~~~------~~~liG~S~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 155 (288)
T TIGR01250 86 LEEVREKLGLD------KFYLLGHSWGGMLAQEYALKYGQH-LKGLIISSMLDSAPEYVKE---LNRLRKELPPEVRAAI 155 (288)
T ss_pred HHHHHHHcCCC------cEEEEEeehHHHHHHHHHHhCccc-cceeeEecccccchHHHHH---HHHHHhhcChhHHHHH
Confidence 99999887644 799999999999999999999998 9999999876532211000 0000000000 000
Q ss_pred -ccccC--CCc----ccccccc---------cChhhHHHhhcCCcc----cCCCCCchhHHHHHHhhHHHHhcCCccccc
Q 020630 191 -TWAAM--PDN----KMVGKAI---------KDPEKLKVIASNPRR----YTGKPRVGTMREIARVCQYIQDNFSKVTVP 250 (323)
Q Consensus 191 -~~~~~--~~~----~~~~~~~---------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 250 (323)
..... ... ....... ............... .......... ... ...+....+.++++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~i~~P 233 (288)
T TIGR01250 156 KRCEASGDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTIT-GNL-KDWDITDKLSEIKVP 233 (288)
T ss_pred HHHHhccCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCcccccc-ccc-cccCHHHHhhccCCC
Confidence 00000 000 0000000 000000000000000 0000000000 000 000123456788999
Q ss_pred EEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 251 FLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 251 ~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
+++++|++|.+ +++..+.+.+.+ +++++++++++||+.++++| +++.+.|.+||+
T Consensus 234 ~lii~G~~D~~-~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~p----~~~~~~i~~fl~ 288 (288)
T TIGR01250 234 TLLTVGEFDTM-TPEAAREMQELI--AGSRLVVFPDGSHMTMIEDP----EVYFKLLSDFIR 288 (288)
T ss_pred EEEEecCCCcc-CHHHHHHHHHhc--cCCeEEEeCCCCCCcccCCH----HHHHHHHHHHhC
Confidence 99999999985 567788888877 67899999999999997665 668888888873
No 31
>PLN02511 hydrolase
Probab=99.97 E-value=8.4e-30 Score=206.77 Aligned_cols=284 Identities=12% Similarity=0.056 Sum_probs=170.5
Q ss_pred cCCccceeEEecCCC-cEEEEEecCC---CCCCceEEEEecCCCCCcch-hhHHHHHHHhcCCcEEEEeccccCcCCCCC
Q 020630 26 QGVRNGKEYFETPNG-KLFTQSFLPL---DQKVKATVYMTHGYGSDTGW-MFQKICISYATWGYAVFAADLLGHGRSDGI 100 (323)
Q Consensus 26 ~~~~~~~~~~~~~~g-~l~~~~~~~~---~~~~~~~vv~~hG~~~~~~~-~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~ 100 (323)
..+.+++..+.+.|| .+.+..+.+. ....+|+||++||+++++.. .+..++..+.++||+|+++|+||||.|...
T Consensus 67 ~~~~~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~ 146 (388)
T PLN02511 67 PAVRYRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT 146 (388)
T ss_pred CCCceeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 445667788999999 7776554321 12347899999999876532 235566677778999999999999999754
Q ss_pred CCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCC-CeeEEEEccCccCCCCCC---chh-
Q 020630 101 RCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPN-TWTGLIFSAPLFVIPENM---KPS- 175 (323)
Q Consensus 101 ~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~-~v~~~il~~~~~~~~~~~---~~~- 175 (323)
.... .....++|+.++++++..+.+ ..+++++||||||.+++.++.+++++ .|.++++++++.+..... ...
T Consensus 147 ~~~~-~~~~~~~Dl~~~i~~l~~~~~--~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~ 223 (388)
T PLN02511 147 TPQF-YSASFTGDLRQVVDHVAGRYP--SANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGF 223 (388)
T ss_pred CcCE-EcCCchHHHHHHHHHHHHHCC--CCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccH
Confidence 3222 235667899999999998764 55899999999999999999998864 267877776654421000 000
Q ss_pred --HHHHHHhhcccccccc----cccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccc
Q 020630 176 --KLHLFMYGLLFGLADT----WAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTV 249 (323)
Q Consensus 176 --~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (323)
.....+...+...... +...................++......... ......+++... .....+.+|++
T Consensus 224 ~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~---gf~~~~~yy~~~-s~~~~L~~I~v 299 (388)
T PLN02511 224 NNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSF---GFKSVDAYYSNS-SSSDSIKHVRV 299 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcC---CCCCHHHHHHHc-CchhhhccCCC
Confidence 0000000000000000 0000000000000000111111110000000 111112222211 12456788999
Q ss_pred cEEEEeeCCCcccCchhH-HHHHHHhcCCCCcEEEecCCCccccccCCchh--HHHHHHHHHHHHHHHHhhc
Q 020630 250 PFLTVHGTADGVTCPTSS-KLLYEKASSADKSIKIYDGMYHSLIQGEPDEN--ANLVLKDMREWIDERVERC 318 (323)
Q Consensus 250 P~l~i~g~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~--~~~~~~~i~~fl~~~~~~~ 318 (323)
|+|+|+|++|+++|.+.. ....+.. +++++++++++||..++++|+.. ...+.+.+.+||+......
T Consensus 300 PtLiI~g~dDpi~p~~~~~~~~~~~~--p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~~~ 369 (388)
T PLN02511 300 PLLCIQAANDPIAPARGIPREDIKAN--PNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEEGK 369 (388)
T ss_pred CeEEEEcCCCCcCCcccCcHhHHhcC--CCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHHhc
Confidence 999999999999998754 3455555 78999999999999999887532 1235778888888776543
No 32
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.97 E-value=9.6e-31 Score=202.87 Aligned_cols=246 Identities=17% Similarity=0.182 Sum_probs=157.1
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~ 120 (323)
+++|..+++. +.+|+|||+||++.+.. .|..+++.|.+ ||+|+++|+||||.|..... .++++++++++.++++.
T Consensus 1 ~~~~~~~g~~--~~~~~li~~hg~~~~~~-~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~~-~~~~~~~~~~~~~~i~~ 75 (251)
T TIGR02427 1 RLHYRLDGAA--DGAPVLVFINSLGTDLR-MWDPVLPALTP-DFRVLRYDKRGHGLSDAPEG-PYSIEDLADDVLALLDH 75 (251)
T ss_pred CceEEeecCC--CCCCeEEEEcCcccchh-hHHHHHHHhhc-ccEEEEecCCCCCCCCCCCC-CCCHHHHHHHHHHHHHH
Confidence 3667777654 23789999999998877 88889888864 79999999999999975443 35899999999999998
Q ss_pred HHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhh-cccccccc-cccCCCc
Q 020630 121 VRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYG-LLFGLADT-WAAMPDN 198 (323)
Q Consensus 121 l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 198 (323)
+..+ +++++||||||.+++.+|.++|++ |+++|++++................... ........ .......
T Consensus 76 ~~~~------~v~liG~S~Gg~~a~~~a~~~p~~-v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (251)
T TIGR02427 76 LGIE------RAVFCGLSLGGLIAQGLAARRPDR-VRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTP 148 (251)
T ss_pred hCCC------ceEEEEeCchHHHHHHHHHHCHHH-hHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHccc
Confidence 8643 899999999999999999999998 9999999876443221100000000000 00000000 0000000
Q ss_pred ccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHh--hHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcC
Q 020630 199 KMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARV--CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASS 276 (323)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 276 (323)
.... .............. . ............ .......+.++++|+++++|++|.++|.+..+.+.+.+
T Consensus 149 ~~~~---~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~-- 219 (251)
T TIGR02427 149 GFRE---AHPARLDLYRNMLV---R-QPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLV-- 219 (251)
T ss_pred cccc---CChHHHHHHHHHHH---h-cCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhC--
Confidence 0000 00000000000000 0 000000000000 01123456778999999999999999999888888887
Q ss_pred CCCcEEEecCCCccccccCCchhHHHHHHHHHHHH
Q 020630 277 ADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWI 311 (323)
Q Consensus 277 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl 311 (323)
++.++++++++||..++++| +.+.+.+.+|+
T Consensus 220 ~~~~~~~~~~~gH~~~~~~p----~~~~~~i~~fl 250 (251)
T TIGR02427 220 PGARFAEIRGAGHIPCVEQP----EAFNAALRDFL 250 (251)
T ss_pred CCceEEEECCCCCcccccCh----HHHHHHHHHHh
Confidence 67899999999999997665 56788888886
No 33
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.97 E-value=2.8e-30 Score=207.73 Aligned_cols=258 Identities=12% Similarity=0.068 Sum_probs=154.7
Q ss_pred cCCC-cEEEEEecCCCCCCceEEEEecCCCCCcch-----------hhHHHHH---HHhcCCcEEEEeccccCcCCCCCC
Q 020630 37 TPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGW-----------MFQKICI---SYATWGYAVFAADLLGHGRSDGIR 101 (323)
Q Consensus 37 ~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~-----------~~~~~~~---~l~~~g~~vi~~d~~G~G~s~~~~ 101 (323)
..+| +++|..+|+.+ .| +||+||++++... .|..+.. .|...+|+||++|+||||.|...
T Consensus 42 ~~~~~~l~y~~~G~~~---~p-~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~~- 116 (343)
T PRK08775 42 GLEDLRLRYELIGPAG---AP-VVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLDV- 116 (343)
T ss_pred CCCCceEEEEEeccCC---CC-EEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCCC-
Confidence 3367 89999988632 34 6666665555431 4777775 56434699999999999988532
Q ss_pred CCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHH
Q 020630 102 CYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFM 181 (323)
Q Consensus 102 ~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~ 181 (323)
.++.+++++|+.++++.++.+ ..++|+||||||++|+.+|.++|++ |+++|++++....... ...+ ...
T Consensus 117 --~~~~~~~a~dl~~ll~~l~l~-----~~~~lvG~SmGG~vA~~~A~~~P~~-V~~LvLi~s~~~~~~~-~~~~--~~~ 185 (343)
T PRK08775 117 --PIDTADQADAIALLLDALGIA-----RLHAFVGYSYGALVGLQFASRHPAR-VRTLVVVSGAHRAHPY-AAAW--RAL 185 (343)
T ss_pred --CCCHHHHHHHHHHHHHHcCCC-----cceEEEEECHHHHHHHHHHHHChHh-hheEEEECccccCCHH-HHHH--HHH
Confidence 247889999999999998754 1357999999999999999999999 9999999986543211 0011 000
Q ss_pred hhcccccccccccCCCc-cccc----ccccC-hhhHHHhhcCCc-------------------ccCCCCCchhHHHHHHh
Q 020630 182 YGLLFGLADTWAAMPDN-KMVG----KAIKD-PEKLKVIASNPR-------------------RYTGKPRVGTMREIARV 236 (323)
Q Consensus 182 ~~~~~~~~~~~~~~~~~-~~~~----~~~~~-~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 236 (323)
................. .... ..... ......+..... ..........+..+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T PRK08775 186 QRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDAAGAQYVARTPVNAYLRLSES 265 (343)
T ss_pred HHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 00000000000000000 0000 00000 000000000000 00000000001111111
Q ss_pred hHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecC-CCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 237 CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDG-MYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 237 ~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
.......+.++++|+|+|+|++|.++|++..+.+.+.+. ++++++++++ +||..++++| +++++.|.+||.+.-
T Consensus 266 ~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~-p~a~l~~i~~~aGH~~~lE~P----e~~~~~l~~FL~~~~ 340 (343)
T PRK08775 266 IDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLG-PRGSLRVLRSPYGHDAFLKET----DRIDAILTTALRSTG 340 (343)
T ss_pred HhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcC-CCCeEEEEeCCccHHHHhcCH----HHHHHHHHHHHHhcc
Confidence 110122467899999999999999999998888888763 4789999985 9999997766 669999999997653
No 34
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.97 E-value=3.3e-30 Score=199.97 Aligned_cols=250 Identities=14% Similarity=0.161 Sum_probs=153.1
Q ss_pred CCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHH
Q 020630 38 PNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLS 116 (323)
Q Consensus 38 ~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~ 116 (323)
.+| +++|.. |. +.+|+|||+||++.+.. .|..+...|.++||+|+++|+||||.|........+++++++++.+
T Consensus 4 ~~~~~~~~~~--~~--~~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~ 78 (273)
T PLN02211 4 ENGEEVTDMK--PN--RQPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLID 78 (273)
T ss_pred cccccccccc--cc--CCCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHH
Confidence 467 777665 32 34789999999998866 8999999998889999999999999886544333589999999999
Q ss_pred HHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccc----c
Q 020630 117 FFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADT----W 192 (323)
Q Consensus 117 ~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 192 (323)
+++.+.. ..+++|+||||||.+++.++..+|++ |+++|++++................. ......... +
T Consensus 79 ~i~~l~~-----~~~v~lvGhS~GG~v~~~~a~~~p~~-v~~lv~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (273)
T PLN02211 79 FLSSLPE-----NEKVILVGHSAGGLSVTQAIHRFPKK-ICLAVYVAATMLKLGFQTDEDMKDGV-PDLSEFGDVYELGF 151 (273)
T ss_pred HHHhcCC-----CCCEEEEEECchHHHHHHHHHhChhh-eeEEEEeccccCCCCCCHHHHHhccc-cchhhhccceeeee
Confidence 9988742 23899999999999999999999998 99999998753211110000000000 000000000 0
Q ss_pred ccCCCcccccccccChhhHHHhhcCCcc--------cCCCCCchhHHHHHHhhHHHHhcCCcc-cccEEEEeeCCCcccC
Q 020630 193 AAMPDNKMVGKAIKDPEKLKVIASNPRR--------YTGKPRVGTMREIARVCQYIQDNFSKV-TVPFLTVHGTADGVTC 263 (323)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~l~i~g~~D~~~~ 263 (323)
........................+... .........+.. ....+...++ ++|+++|.|++|..+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~vP~l~I~g~~D~~ip 226 (273)
T PLN02211 152 GLGPDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRS-----ARFEEETGDIDKVPRVYIKTLHDHVVK 226 (273)
T ss_pred ccCCCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCcccccc-----ccccccccccCccceEEEEeCCCCCCC
Confidence 0000000000000000001110000000 000000000000 0011223344 7899999999999999
Q ss_pred chhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHH
Q 020630 264 PTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWI 311 (323)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl 311 (323)
++.++.+.+.+ +..+++.++ +||.+++++|++ +.+.|.++.
T Consensus 227 ~~~~~~m~~~~--~~~~~~~l~-~gH~p~ls~P~~----~~~~i~~~a 267 (273)
T PLN02211 227 PEQQEAMIKRW--PPSQVYELE-SDHSPFFSTPFL----LFGLLIKAA 267 (273)
T ss_pred HHHHHHHHHhC--CccEEEEEC-CCCCccccCHHH----HHHHHHHHH
Confidence 99999999988 567889997 899999888854 555555543
No 35
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.97 E-value=2e-30 Score=199.68 Aligned_cols=230 Identities=14% Similarity=0.158 Sum_probs=142.0
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
+|+|||+||++++.. .|..+++.| + +|+|+++|+||||.|..+.. .+++++++|+.++++.+..+ ++++
T Consensus 2 ~p~vvllHG~~~~~~-~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~~--~~~~~~~~~l~~~l~~~~~~------~~~l 70 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ-DWQPVGEAL-P-DYPRLYIDLPGHGGSAAISV--DGFADVSRLLSQTLQSYNIL------PYWL 70 (242)
T ss_pred CCEEEEECCCCCChH-HHHHHHHHc-C-CCCEEEecCCCCCCCCCccc--cCHHHHHHHHHHHHHHcCCC------CeEE
Confidence 578999999998876 899999988 3 59999999999999986543 38999999999999987643 8999
Q ss_pred EEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccccccccc-----ccCCCcccccccccChh
Q 020630 135 FGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTW-----AAMPDNKMVGKAIKDPE 209 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 209 (323)
+||||||.+|+.+|.++|+..|++++++++.......................+.... ........... .....
T Consensus 71 vG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (242)
T PRK11126 71 VGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFAS-LNAEQ 149 (242)
T ss_pred EEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhc-cCccH
Confidence 9999999999999999865339999998876543221100000000000000000000 00000000000 00000
Q ss_pred hHHHhhcCCcccCCCCCchhHHHHHHh-----hHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEe
Q 020630 210 KLKVIASNPRRYTGKPRVGTMREIARV-----CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIY 284 (323)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (323)
........... ........... ..+..+.+.++++|+++++|++|..+. .+.+. .+++++++
T Consensus 150 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~---~~~~~~~i 216 (242)
T PRK11126 150 RQQLVAKRSNN-----NGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ---LALPLHVI 216 (242)
T ss_pred HHHHHHhcccC-----CHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH---hcCeEEEe
Confidence 01111000000 00001111110 112345677899999999999998542 23332 36899999
Q ss_pred cCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 285 DGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 285 ~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+++||++++++| +++.+.|.+|+.+
T Consensus 217 ~~~gH~~~~e~p----~~~~~~i~~fl~~ 241 (242)
T PRK11126 217 PNAGHNAHRENP----AAFAASLAQILRL 241 (242)
T ss_pred CCCCCchhhhCh----HHHHHHHHHHHhh
Confidence 999999997666 5688888888864
No 36
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.97 E-value=3.9e-30 Score=198.76 Aligned_cols=234 Identities=16% Similarity=0.205 Sum_probs=145.0
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
+|+|||+||++++.. .|..+++.|.+ +|+|+++|+||+|.|..... .+++++++++.+.+ ..++++
T Consensus 4 ~~~iv~~HG~~~~~~-~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~~~--~~~~~~~~~~~~~~----------~~~~~l 69 (245)
T TIGR01738 4 NVHLVLIHGWGMNAE-VFRCLDEELSA-HFTLHLVDLPGHGRSRGFGP--LSLADAAEAIAAQA----------PDPAIW 69 (245)
T ss_pred CceEEEEcCCCCchh-hHHHHHHhhcc-CeEEEEecCCcCccCCCCCC--cCHHHHHHHHHHhC----------CCCeEE
Confidence 479999999998877 89999999976 59999999999999875432 36777776665432 238999
Q ss_pred EEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCC--c---hhHHHHHHhhcccc-cccccccCCCcccccccccCh
Q 020630 135 FGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENM--K---PSKLHLFMYGLLFG-LADTWAAMPDNKMVGKAIKDP 208 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~--~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 208 (323)
+||||||.+++.+|.++|++ ++++|++++........ . .......+...+.. .....................
T Consensus 70 vG~S~Gg~~a~~~a~~~p~~-v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (245)
T TIGR01738 70 LGWSLGGLVALHIAATHPDR-VRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTARQ 148 (245)
T ss_pred EEEcHHHHHHHHHHHHCHHh-hheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccch
Confidence 99999999999999999998 99999998765432111 0 00001000000000 000000000000000000000
Q ss_pred hhHHHhhcCCcccCCCCCchhHHHHHHhh--HHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecC
Q 020630 209 EKLKVIASNPRRYTGKPRVGTMREIARVC--QYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDG 286 (323)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (323)
......... ... ............... .+....+.++++|+++++|++|.++|.+..+.+.+.+ ++++++++++
T Consensus 149 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~ 224 (245)
T TIGR01738 149 DARALKQTL-LAR-PTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLA--PHSELYIFAK 224 (245)
T ss_pred HHHHHHHHh-hcc-CCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhC--CCCeEEEeCC
Confidence 000000000 000 000011111111111 1233456788999999999999999999988888888 7899999999
Q ss_pred CCccccccCCchhHHHHHHHHHHHH
Q 020630 287 MYHSLIQGEPDENANLVLKDMREWI 311 (323)
Q Consensus 287 ~gH~~~~~~~~~~~~~~~~~i~~fl 311 (323)
+||++++++| +++.+.|.+|+
T Consensus 225 ~gH~~~~e~p----~~~~~~i~~fi 245 (245)
T TIGR01738 225 AAHAPFLSHA----EAFCALLVAFK 245 (245)
T ss_pred CCCCccccCH----HHHHHHHHhhC
Confidence 9999997666 66888888874
No 37
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.97 E-value=5.9e-30 Score=206.51 Aligned_cols=261 Identities=15% Similarity=0.193 Sum_probs=158.7
Q ss_pred cCCC-cEEEEEecCCCCCCceEEEEecCCCCCcch----------hhHHHH---HHHhcCCcEEEEecccc--CcCCCCC
Q 020630 37 TPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGW----------MFQKIC---ISYATWGYAVFAADLLG--HGRSDGI 100 (323)
Q Consensus 37 ~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~----------~~~~~~---~~l~~~g~~vi~~d~~G--~G~s~~~ 100 (323)
..+| +|+|..+++.+...+++|||+||++++... .|..++ ..|..++|+|+++|+|| ||.|...
T Consensus 12 ~~~~~~~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~ 91 (351)
T TIGR01392 12 VLSDVRVAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPS 91 (351)
T ss_pred ccCCceEEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCC
Confidence 3466 899999997432346799999999987521 366664 35555689999999999 5555421
Q ss_pred ----C-------CCCCChHHHHhhHHHHHHHHHhhCCCCCCC-EEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCC
Q 020630 101 ----R-------CYLGDMEKVAASSLSFFKHVRHSEPYRDLP-AFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 101 ----~-------~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~ 168 (323)
. ...++++++++++.++++.++.. + ++++||||||.+++.+|.++|++ |+++|++++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~l~G~S~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~ 164 (351)
T TIGR01392 92 SINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIE------QIAAVVGGSMGGMQALEWAIDYPER-VRAIVVLATSARH 164 (351)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCC------CceEEEEECHHHHHHHHHHHHChHh-hheEEEEccCCcC
Confidence 1 11358899999999999998754 6 99999999999999999999999 9999999986643
Q ss_pred CCCCchhHHHHHHhhccc---cccc-ccccC--CCc-----ccccc--cccChhhHHHhhcCCcc---------------
Q 020630 169 PENMKPSKLHLFMYGLLF---GLAD-TWAAM--PDN-----KMVGK--AIKDPEKLKVIASNPRR--------------- 220 (323)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~---~~~~-~~~~~--~~~-----~~~~~--~~~~~~~~~~~~~~~~~--------------- 220 (323)
...... +. ......+. .... .+... +.. ..... ..........+......
T Consensus 165 ~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 242 (351)
T TIGR01392 165 SAWCIA-FN-EVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVE 242 (351)
T ss_pred CHHHHH-HH-HHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHH
Confidence 321100 10 00000000 0000 00000 000 00000 00000000000000000
Q ss_pred ---------cCCCCCchhHHHHHHhh---------HHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEE
Q 020630 221 ---------YTGKPRVGTMREIARVC---------QYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIK 282 (323)
Q Consensus 221 ---------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~ 282 (323)
................. .+..+.+++|++|+|+|+|++|.++|++.++.+.+.+ ++.++.
T Consensus 243 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i--~~~~~~ 320 (351)
T TIGR01392 243 SYLRYQGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKAL--PAAGLR 320 (351)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHH--hhcCCc
Confidence 00000000000111111 1124567889999999999999999999999999999 556554
Q ss_pred -----EecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 283 -----IYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 283 -----~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
+++++||.+++++| +++.+.|.+||+
T Consensus 321 v~~~~i~~~~GH~~~le~p----~~~~~~l~~FL~ 351 (351)
T TIGR01392 321 VTYVEIESPYGHDAFLVET----DQVEELIRGFLR 351 (351)
T ss_pred eEEEEeCCCCCcchhhcCH----HHHHHHHHHHhC
Confidence 56789999997666 668888988873
No 38
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.97 E-value=2.3e-29 Score=204.38 Aligned_cols=264 Identities=13% Similarity=0.117 Sum_probs=159.3
Q ss_pred CC-cEEEEEecCCCCCCceEEEEecCCCCCcch------------hhHHHHH---HHhcCCcEEEEeccccC-cCCCCCC
Q 020630 39 NG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGW------------MFQKICI---SYATWGYAVFAADLLGH-GRSDGIR 101 (323)
Q Consensus 39 ~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~------------~~~~~~~---~l~~~g~~vi~~d~~G~-G~s~~~~ 101 (323)
+| +++|..+|..+...+|+|||+||++++... .|..++. .|...+|+||++|++|+ |.|+.+.
T Consensus 31 ~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~ 110 (379)
T PRK00175 31 PPVELAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPS 110 (379)
T ss_pred CCceEEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCC
Confidence 45 789999986432346899999999988651 2555542 34345799999999983 5453321
Q ss_pred C-------------CCCChHHHHhhHHHHHHHHHhhCCCCCCC-EEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 102 C-------------YLGDMEKVAASSLSFFKHVRHSEPYRDLP-AFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 102 ~-------------~~~~~~~~~~d~~~~i~~l~~~~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
. ..++++++++++.++++.++.+ + ++++||||||.+++.+|.++|++ |+++|++++...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~lvG~S~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~ 183 (379)
T PRK00175 111 SINPDTGKPYGSDFPVITIRDWVRAQARLLDALGIT------RLAAVVGGSMGGMQALEWAIDYPDR-VRSALVIASSAR 183 (379)
T ss_pred CCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCC------CceEEEEECHHHHHHHHHHHhChHh-hhEEEEECCCcc
Confidence 0 1358999999999999999865 6 58999999999999999999999 999999997664
Q ss_pred CCCCCchhHHH--HHHhhcccccccc-cc---cCCCccc-ccc-----cccC-hhhHHHhhcCC----------------
Q 020630 168 IPENMKPSKLH--LFMYGLLFGLADT-WA---AMPDNKM-VGK-----AIKD-PEKLKVIASNP---------------- 218 (323)
Q Consensus 168 ~~~~~~~~~~~--~~~~~~~~~~~~~-~~---~~~~~~~-~~~-----~~~~-~~~~~~~~~~~---------------- 218 (323)
...... .+.. .........+... +. ....... ... .... ......+....
T Consensus 184 ~~~~~~-~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 262 (379)
T PRK00175 184 LSAQNI-AFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVE 262 (379)
T ss_pred cCHHHH-HHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHH
Confidence 322110 0100 0000000000000 00 0000000 000 0000 00000000000
Q ss_pred -------cccCCCCCchhHHHHHHhh----------HHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCC--
Q 020630 219 -------RRYTGKPRVGTMREIARVC----------QYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADK-- 279 (323)
Q Consensus 219 -------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~-- 279 (323)
................... .+..+.+.+|++|+|+|+|++|.++|++.++.+.+.+ +++
T Consensus 263 ~~l~~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i--~~a~~ 340 (379)
T PRK00175 263 SYLRYQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDAL--LAAGA 340 (379)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHH--HhcCC
Confidence 0000000000000111110 0134567889999999999999999999999999999 444
Q ss_pred --cEEEec-CCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 280 --SIKIYD-GMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 280 --~~~~~~-~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
++++++ ++||..++++| +++++.|.+||.+...
T Consensus 341 ~~~l~~i~~~~GH~~~le~p----~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 341 DVSYAEIDSPYGHDAFLLDD----PRYGRLVRAFLERAAR 376 (379)
T ss_pred CeEEEEeCCCCCchhHhcCH----HHHHHHHHHHHHhhhh
Confidence 677775 89999997776 5689999999987643
No 39
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.97 E-value=5.1e-29 Score=197.50 Aligned_cols=246 Identities=17% Similarity=0.139 Sum_probs=150.2
Q ss_pred ceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC-CCCChH
Q 020630 31 GKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC-YLGDME 108 (323)
Q Consensus 31 ~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-~~~~~~ 108 (323)
...++...+| +++|..+++.+ +++|||+||++++.. . ..+...+...+|+|+++|+||||.|..... ...+.+
T Consensus 5 ~~~~~~~~~~~~l~y~~~g~~~---~~~lvllHG~~~~~~-~-~~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~ 79 (306)
T TIGR01249 5 VSGYLNVSDNHQLYYEQSGNPD---GKPVVFLHGGPGSGT-D-PGCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTW 79 (306)
T ss_pred cCCeEEcCCCcEEEEEECcCCC---CCEEEEECCCCCCCC-C-HHHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHH
Confidence 3456777788 99999887543 568999999887654 2 234445555689999999999999986542 234678
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHH---------H
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLH---------L 179 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~---------~ 179 (323)
++++|+..++++++.+ +++++||||||.+++.++.++|++ |+++|++++....+... .+.. .
T Consensus 80 ~~~~dl~~l~~~l~~~------~~~lvG~S~GG~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~~--~~~~~~~~~~~~~~ 150 (306)
T TIGR01249 80 DLVADIEKLREKLGIK------NWLVFGGSWGSTLALAYAQTHPEV-VTGLVLRGIFLLREKEW--SWFYEGGASMIYPD 150 (306)
T ss_pred HHHHHHHHHHHHcCCC------CEEEEEECHHHHHHHHHHHHChHh-hhhheeeccccCCHHHH--HHHHhcchhhhCHH
Confidence 8999999999888643 799999999999999999999998 99999998765422110 0000 0
Q ss_pred HHhhcccccccccc-cCCCcccccccccCh-hh----H----HHhhcCCcccCC-----CCCchhHHHHHH------h--
Q 020630 180 FMYGLLFGLADTWA-AMPDNKMVGKAIKDP-EK----L----KVIASNPRRYTG-----KPRVGTMREIAR------V-- 236 (323)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~----~----~~~~~~~~~~~~-----~~~~~~~~~~~~------~-- 236 (323)
.+..+......... ......+........ .. . .+.......... .........+.. .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (306)
T TIGR01249 151 AWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNK 230 (306)
T ss_pred HHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHh
Confidence 00001000000000 000000000000000 00 0 000000000000 000000111100 0
Q ss_pred -----hHHHHhcCCcc-cccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCcccc
Q 020630 237 -----CQYIQDNFSKV-TVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLI 292 (323)
Q Consensus 237 -----~~~~~~~~~~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 292 (323)
.......+.++ ++|+++|+|++|.++|.+.++.+++.+ +++++++++++||..+
T Consensus 231 ~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~--~~~~~~~~~~~gH~~~ 290 (306)
T TIGR01249 231 GFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAF--PEAELKVTNNAGHSAF 290 (306)
T ss_pred chhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhC--CCCEEEEECCCCCCCC
Confidence 11123455667 699999999999999999999999998 7789999999999997
No 40
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.97 E-value=1.3e-30 Score=199.10 Aligned_cols=220 Identities=25% Similarity=0.354 Sum_probs=146.7
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC-CCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEE
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC-YLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFG 136 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G 136 (323)
|||+||++++.. .|..+++.|+ +||+|+++|+||+|.|..... ...+++++++|+.++++.+..+ +++++|
T Consensus 1 vv~~hG~~~~~~-~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~lvG 72 (228)
T PF12697_consen 1 VVFLHGFGGSSE-SWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIK------KVILVG 72 (228)
T ss_dssp EEEE-STTTTGG-GGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTS------SEEEEE
T ss_pred eEEECCCCCCHH-HHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhcccccccc------cccccc
Confidence 799999999886 8999999995 689999999999999987553 2358899999999999998864 899999
Q ss_pred echhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhc
Q 020630 137 ESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIAS 216 (323)
Q Consensus 137 ~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
||+||.+++.++.++|++ |+++|+++|................+............... ...................
T Consensus 73 ~S~Gg~~a~~~a~~~p~~-v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 150 (228)
T PF12697_consen 73 HSMGGMIALRLAARYPDR-VKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLA-SRFFYRWFDGDEPEDLIRS 150 (228)
T ss_dssp ETHHHHHHHHHHHHSGGG-EEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHH
T ss_pred cccccccccccccccccc-cccceeecccccccccccccccchhhhhhhhcccccccccc-ccccccccccccccccccc
Confidence 999999999999999998 99999999877532111000000001100000000000000 0000000001111111111
Q ss_pred CCcccCCCCCchhHHHHHH---hhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccc
Q 020630 217 NPRRYTGKPRVGTMREIAR---VCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQ 293 (323)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 293 (323)
.......... ...+....+.++++|+++++|++|.+++.+..+.+.+.+ +++++++++++||++++
T Consensus 151 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~ 219 (228)
T PF12697_consen 151 ---------SRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKL--PNAELVVIPGAGHFLFL 219 (228)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHS--TTEEEEEETTSSSTHHH
T ss_pred ---------cccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHC--CCCEEEEECCCCCccHH
Confidence 0111111111 223345667788999999999999999988888888888 78999999999999997
Q ss_pred cCCch
Q 020630 294 GEPDE 298 (323)
Q Consensus 294 ~~~~~ 298 (323)
++|++
T Consensus 220 ~~p~~ 224 (228)
T PF12697_consen 220 EQPDE 224 (228)
T ss_dssp HSHHH
T ss_pred HCHHH
Confidence 77644
No 41
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.97 E-value=5.2e-29 Score=195.39 Aligned_cols=270 Identities=20% Similarity=0.193 Sum_probs=167.8
Q ss_pred ceeEEecCCC--cEEEEEecCC------CCCCceEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEeccccCc-CCCCC
Q 020630 31 GKEYFETPNG--KLFTQSFLPL------DQKVKATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAADLLGHG-RSDGI 100 (323)
Q Consensus 31 ~~~~~~~~~g--~l~~~~~~~~------~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d~~G~G-~s~~~ 100 (323)
....+....| .+....++.. +...+++||++||++++.. .|+.....|.++ |+.|+++|++|+| .|..+
T Consensus 26 ~~~~i~~~~g~~~~~~~w~~~~~~~~~~~~~~~~pvlllHGF~~~~~-~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~ 104 (326)
T KOG1454|consen 26 RSTSIEIPWGPLTIRSKWIPNLDKYGSPGDKDKPPVLLLHGFGASSF-SWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLP 104 (326)
T ss_pred cceEEEcccCCceeEEEEeccceeccCCCCCCCCcEEEeccccCCcc-cHhhhccccccccceEEEEEecCCCCcCCCCC
Confidence 3344555555 5555555443 1135899999999999665 999999988876 5999999999999 55555
Q ss_pred CCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEE---EccCccCCCCCCchhH-
Q 020630 101 RCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLI---FSAPLFVIPENMKPSK- 176 (323)
Q Consensus 101 ~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~i---l~~~~~~~~~~~~~~~- 176 (323)
....++..++++-+..+....... +++++|||+||.+|+.+|+.+|+. |+++| ++++............
T Consensus 105 ~~~~y~~~~~v~~i~~~~~~~~~~------~~~lvghS~Gg~va~~~Aa~~P~~-V~~lv~~~~~~~~~~~~~~~~~~~~ 177 (326)
T KOG1454|consen 105 RGPLYTLRELVELIRRFVKEVFVE------PVSLVGHSLGGIVALKAAAYYPET-VDSLVLLDLLGPPVYSTPKGIKGLR 177 (326)
T ss_pred CCCceehhHHHHHHHHHHHhhcCc------ceEEEEeCcHHHHHHHHHHhCccc-ccceeeecccccccccCCcchhHHH
Confidence 555578888888888887777644 799999999999999999999999 99999 5655554333221111
Q ss_pred -HHHHHhhcccccccccccCCCc----ccccccc----c-ChhhHHHhhcCCc----ccCCCCCchhHHHHHHhhHHHHh
Q 020630 177 -LHLFMYGLLFGLADTWAAMPDN----KMVGKAI----K-DPEKLKVIASNPR----RYTGKPRVGTMREIARVCQYIQD 242 (323)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
.............+........ .+..... . ............. .......................
T Consensus 178 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (326)
T KOG1454|consen 178 RLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLS 257 (326)
T ss_pred HhhhhhccHhhhcCccccccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHH
Confidence 1111111111111110000000 0000000 0 0000000000000 00000000000000000011234
Q ss_pred cCCccc-ccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 243 NFSKVT-VPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 243 ~~~~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
.++++. ||+++++|++|.++|.+.++.+.+.+ +++++.+++++||.+++++| +.++..|..|+.+.
T Consensus 258 ~~~~i~~~pvlii~G~~D~~~p~~~~~~~~~~~--pn~~~~~I~~~gH~~h~e~P----e~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 258 LIKKIWKCPVLIIWGDKDQIVPLELAEELKKKL--PNAELVEIPGAGHLPHLERP----EEVAALLRSFIARL 324 (326)
T ss_pred hhccccCCceEEEEcCcCCccCHHHHHHHHhhC--CCceEEEeCCCCcccccCCH----HHHHHHHHHHHHHh
Confidence 556665 99999999999999999999999988 89999999999999996555 67999999999865
No 42
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.97 E-value=2.7e-29 Score=194.67 Aligned_cols=233 Identities=17% Similarity=0.221 Sum_probs=145.5
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC-CCCChHHHHhh-HHHHHHHHHhhCCCCCCCE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC-YLGDMEKVAAS-SLSFFKHVRHSEPYRDLPA 132 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-~~~~~~~~~~d-~~~~i~~l~~~~~~~~~~~ 132 (323)
+|+||++||++++.. .|..+++.|+ +||+|+++|+||+|.|+.+.. ...++++.+++ +..+++.+. ..++
T Consensus 1 ~~~vv~~hG~~~~~~-~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 72 (251)
T TIGR03695 1 KPVLVFLHGFLGSGA-DWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLG------IEPF 72 (251)
T ss_pred CCEEEEEcCCCCchh-hHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcC------CCeE
Confidence 478999999998877 8999999998 689999999999999976543 33477888888 666666664 3489
Q ss_pred EEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHH---Hhhcc-----cccccccccCCCcccccc-
Q 020630 133 FLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLF---MYGLL-----FGLADTWAAMPDNKMVGK- 203 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~- 203 (323)
+++|||+||.+++.+|.++|+. |++++++++................ ....+ ..+...+... .....
T Consensus 73 ~l~G~S~Gg~ia~~~a~~~~~~-v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 148 (251)
T TIGR03695 73 FLVGYSMGGRIALYYALQYPER-VQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQ---PLFASQ 148 (251)
T ss_pred EEEEeccHHHHHHHHHHhCchh-eeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcC---ceeeec
Confidence 9999999999999999999998 9999999886543321111000000 00000 0000000000 00000
Q ss_pred -cccChhhHHHhhcCCcccCCCCCchhHHHHHHh-----hHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCC
Q 020630 204 -AIKDPEKLKVIASNPRRYTGKPRVGTMREIARV-----CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSA 277 (323)
Q Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~ 277 (323)
................. ........... .......+.++++|+++++|++|..++ +..+.+.+.. +
T Consensus 149 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~--~ 220 (251)
T TIGR03695 149 KNLPPEQRQALRAKRLAN-----NPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QIAKEMQKLL--P 220 (251)
T ss_pred ccCChHHhHHHHHhcccc-----cchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HHHHHHHhcC--C
Confidence 00000000011100000 00011111110 011234467789999999999998764 4556666666 7
Q ss_pred CCcEEEecCCCccccccCCchhHHHHHHHHHHHH
Q 020630 278 DKSIKIYDGMYHSLIQGEPDENANLVLKDMREWI 311 (323)
Q Consensus 278 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl 311 (323)
++++++++++||++++++| +++.+.|.+|+
T Consensus 221 ~~~~~~~~~~gH~~~~e~~----~~~~~~i~~~l 250 (251)
T TIGR03695 221 NLTLVIIANAGHNIHLENP----EAFAKILLAFL 250 (251)
T ss_pred CCcEEEEcCCCCCcCccCh----HHHHHHHHHHh
Confidence 7899999999999997666 56888888887
No 43
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.96 E-value=7.4e-28 Score=196.07 Aligned_cols=247 Identities=15% Similarity=0.156 Sum_probs=161.7
Q ss_pred cCCccceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCC
Q 020630 26 QGVRNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYL 104 (323)
Q Consensus 26 ~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~ 104 (323)
.+.+.+...++..+| .|.++.+.|...++.|+||++||+++.....|..+++.|+++||+|+++|+||+|.|..... .
T Consensus 164 ~~~~~e~v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~-~ 242 (414)
T PRK05077 164 LPGELKELEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKL-T 242 (414)
T ss_pred cCCceEEEEEEcCCCcEEEEEEEECCCCCCccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCc-c
Confidence 444567888899999 99999998875466788888888776543367788899999999999999999999965321 1
Q ss_pred CChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhc
Q 020630 105 GDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGL 184 (323)
Q Consensus 105 ~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~ 184 (323)
.+.... ..++++++.....++..+++++||||||++++.+|..+|++ |+++|++++......... .+ ...+...
T Consensus 243 ~d~~~~---~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~r-i~a~V~~~~~~~~~~~~~-~~-~~~~p~~ 316 (414)
T PRK05077 243 QDSSLL---HQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPR-LKAVACLGPVVHTLLTDP-KR-QQQVPEM 316 (414)
T ss_pred ccHHHH---HHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcC-ceEEEEECCccchhhcch-hh-hhhchHH
Confidence 123222 24566666655444567999999999999999999998988 999999988754110000 00 0000000
Q ss_pred ccc-cccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcC-CcccccEEEEeeCCCccc
Q 020630 185 LFG-LADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNF-SKVTVPFLTVHGTADGVT 262 (323)
Q Consensus 185 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~P~l~i~g~~D~~~ 262 (323)
... +....... ..........+ ..........+ .++++|+|+|+|++|.++
T Consensus 317 ~~~~la~~lg~~--------~~~~~~l~~~l-------------------~~~sl~~~~~l~~~i~~PvLiI~G~~D~iv 369 (414)
T PRK05077 317 YLDVLASRLGMH--------DASDEALRVEL-------------------NRYSLKVQGLLGRRCPTPMLSGYWKNDPFS 369 (414)
T ss_pred HHHHHHHHhCCC--------CCChHHHHHHh-------------------hhccchhhhhhccCCCCcEEEEecCCCCCC
Confidence 000 00000000 00000000000 00000000111 568999999999999999
Q ss_pred CchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 263 CPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
|.+.++.+.+.. ++.++++++++ .+. +..+++.+.+.+||.+++
T Consensus 370 P~~~a~~l~~~~--~~~~l~~i~~~---~~~----e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 370 PEEDSRLIASSS--ADGKLLEIPFK---PVY----RNFDKALQEISDWLEDRL 413 (414)
T ss_pred CHHHHHHHHHhC--CCCeEEEccCC---Ccc----CCHHHHHHHHHHHHHHHh
Confidence 999999888777 78899999986 232 245779999999998875
No 44
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.96 E-value=4.1e-28 Score=197.66 Aligned_cols=260 Identities=18% Similarity=0.147 Sum_probs=143.7
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHH----HHhhHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEK----VAASSLS 116 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~----~~~d~~~ 116 (323)
++.+..+.+. ..+|+|||+||++++.. .|...++.|+++ |+|+++|+||||.|+.+.....+.++ +++++.+
T Consensus 93 ~~~~~~~~~~--~~~p~vvllHG~~~~~~-~~~~~~~~L~~~-~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~ 168 (402)
T PLN02894 93 FINTVTFDSK--EDAPTLVMVHGYGASQG-FFFRNFDALASR-FRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEE 168 (402)
T ss_pred eEEEEEecCC--CCCCEEEEECCCCcchh-HHHHHHHHHHhC-CEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHH
Confidence 3444444322 35789999999998776 677777888764 99999999999999765422122222 3455555
Q ss_pred HHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHH--------HHHhhcc--c
Q 020630 117 FFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLH--------LFMYGLL--F 186 (323)
Q Consensus 117 ~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~--------~~~~~~~--~ 186 (323)
+++.+. ..+++++||||||.+++.+|.++|++ |+++|+++|.............. ..+...+ .
T Consensus 169 ~~~~l~------~~~~~lvGhS~GG~la~~~a~~~p~~-v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (402)
T PLN02894 169 WRKAKN------LSNFILLGHSFGGYVAAKYALKHPEH-VQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWES 241 (402)
T ss_pred HHHHcC------CCCeEEEEECHHHHHHHHHHHhCchh-hcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhc
Confidence 555543 33899999999999999999999998 99999998865433221110000 0000000 0
Q ss_pred ccccccccC---C-Cccccccc-------------ccChhhHHHhhcCCcccCCCCCchhHHHHH-----HhhHHHHhcC
Q 020630 187 GLADTWAAM---P-DNKMVGKA-------------IKDPEKLKVIASNPRRYTGKPRVGTMREIA-----RVCQYIQDNF 244 (323)
Q Consensus 187 ~~~~~~~~~---~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 244 (323)
.+.+..... + ...+.... .............................. ....+....+
T Consensus 242 ~~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (402)
T PLN02894 242 NFTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESA 321 (402)
T ss_pred CCCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhc
Confidence 000000000 0 00000000 000000000000000000000000000000 0112244567
Q ss_pred CcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 245 SKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 245 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
.++++|+++|+|++|.+.+ .....+.+... +.+++++++++||+.++++|+++.+.+.+.+..|++.
T Consensus 322 ~~I~vP~liI~G~~D~i~~-~~~~~~~~~~~-~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~~~~ 388 (402)
T PLN02894 322 SEWKVPTTFIYGRHDWMNY-EGAVEARKRMK-VPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKYLSP 388 (402)
T ss_pred ccCCCCEEEEEeCCCCCCc-HHHHHHHHHcC-CCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHhccC
Confidence 8889999999999998765 55555555552 3588999999999999888866444444444444443
No 45
>PRK10985 putative hydrolase; Provisional
Probab=99.96 E-value=5.6e-28 Score=192.58 Aligned_cols=281 Identities=11% Similarity=0.086 Sum_probs=165.8
Q ss_pred cCCccceeEEecCCC-cEEEEEec-CCCCCCceEEEEecCCCCCcc-hhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC
Q 020630 26 QGVRNGKEYFETPNG-KLFTQSFL-PLDQKVKATVYMTHGYGSDTG-WMFQKICISYATWGYAVFAADLLGHGRSDGIRC 102 (323)
Q Consensus 26 ~~~~~~~~~~~~~~g-~l~~~~~~-~~~~~~~~~vv~~hG~~~~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~ 102 (323)
..+......+.+.|| .+.+.... +.....+|+||++||++++.. .....+++.|.++||+|+++|+||||.++....
T Consensus 27 ~~~~~~~~~~~~~dg~~~~l~w~~~~~~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~ 106 (324)
T PRK10985 27 VLFTPYWQRLELPDGDFVDLAWSEDPAQARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLH 106 (324)
T ss_pred CCCCcceeEEECCCCCEEEEecCCCCccCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCc
Confidence 445566777899999 66554332 222245789999999987643 234668889999999999999999998764322
Q ss_pred CCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCC-CeeEEEEccCccCCCCCCch---h---
Q 020630 103 YLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPN-TWTGLIFSAPLFVIPENMKP---S--- 175 (323)
Q Consensus 103 ~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~-~v~~~il~~~~~~~~~~~~~---~--- 175 (323)
..+. ....+|+..+++++..+.+ ..+++++||||||.+++.++..+++. .+.++|+++++......... .
T Consensus 107 ~~~~-~~~~~D~~~~i~~l~~~~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~ 183 (324)
T PRK10985 107 RIYH-SGETEDARFFLRWLQREFG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSR 183 (324)
T ss_pred ceEC-CCchHHHHHHHHHHHHhCC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHH
Confidence 2112 2235788888888877644 45899999999999988888776542 38888888887653211100 0
Q ss_pred HHHHHHhhccc-ccccccccCCCccc--ccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEE
Q 020630 176 KLHLFMYGLLF-GLADTWAAMPDNKM--VGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFL 252 (323)
Q Consensus 176 ~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 252 (323)
.....+...+. .............. ...........++...... .........+++.... ....++++++|++
T Consensus 184 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~---~~~g~~~~~~~y~~~~-~~~~l~~i~~P~l 259 (324)
T PRK10985 184 VYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITA---RIHGFADAIDYYRQCS-ALPLLNQIRKPTL 259 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhhee---ccCCCCCHHHHHHHCC-hHHHHhCCCCCEE
Confidence 00000000000 00000000000000 0000000001111101011 1111222233333322 3466788999999
Q ss_pred EEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCc-hhHHHHHHHHHHHHHHHH
Q 020630 253 TVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPD-ENANLVLKDMREWIDERV 315 (323)
Q Consensus 253 ~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~i~~fl~~~~ 315 (323)
+|+|++|++++++....+.+.. +++++.+++++||+.+++..- ......-+.+.+|+....
T Consensus 260 ii~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 260 IIHAKDDPFMTHEVIPKPESLP--PNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred EEecCCCCCCChhhChHHHHhC--CCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 9999999999988777776555 678999999999999986531 112346677888887654
No 46
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.96 E-value=2.4e-28 Score=199.94 Aligned_cols=244 Identities=19% Similarity=0.213 Sum_probs=153.4
Q ss_pred CC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHH
Q 020630 39 NG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSF 117 (323)
Q Consensus 39 ~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~ 117 (323)
++ +++|..+++.+ +++|||+||++++.. .|..+...|.+. |+|+++|+||||.|..... ..+++++++++.++
T Consensus 117 ~~~~i~~~~~g~~~---~~~vl~~HG~~~~~~-~~~~~~~~l~~~-~~v~~~d~~g~G~s~~~~~-~~~~~~~~~~~~~~ 190 (371)
T PRK14875 117 GGRTVRYLRLGEGD---GTPVVLIHGFGGDLN-NWLFNHAALAAG-RPVIALDLPGHGASSKAVG-AGSLDELAAAVLAF 190 (371)
T ss_pred cCcEEEEecccCCC---CCeEEEECCCCCccc-hHHHHHHHHhcC-CEEEEEcCCCCCCCCCCCC-CCCHHHHHHHHHHH
Confidence 45 78887776533 689999999998877 888888888765 9999999999999965433 34899999999999
Q ss_pred HHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhc--ccccccccccC
Q 020630 118 FKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGL--LFGLADTWAAM 195 (323)
Q Consensus 118 i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 195 (323)
++.+.. .+++++|||+||.+++.+|..+|++ ++++|++++........ ..+ ...+... ...+.......
T Consensus 191 ~~~~~~------~~~~lvG~S~Gg~~a~~~a~~~~~~-v~~lv~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 261 (371)
T PRK14875 191 LDALGI------ERAHLVGHSMGGAVALRLAARAPQR-VASLTLIAPAGLGPEIN-GDY-IDGFVAAESRRELKPVLELL 261 (371)
T ss_pred HHhcCC------ccEEEEeechHHHHHHHHHHhCchh-eeEEEEECcCCcCcccc-hhH-HHHhhcccchhHHHHHHHHH
Confidence 988753 3899999999999999999999988 99999998764322111 111 0000000 00000000000
Q ss_pred CCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHh-------hHHHHhcCCcccccEEEEeeCCCcccCchhHH
Q 020630 196 PDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARV-------CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSK 268 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~ 268 (323)
... .................. .........+... ..+....+.++++|+++++|++|.++|++.++
T Consensus 262 ~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~ 334 (371)
T PRK14875 262 FAD---PALVTRQMVEDLLKYKRL----DGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQ 334 (371)
T ss_pred hcC---hhhCCHHHHHHHHHHhcc----ccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHh
Confidence 000 000000000000000000 0000000000000 01233456678999999999999999987654
Q ss_pred HHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 269 LLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
.+. .++++.+++++||+.++++| +++.+.|.+||++
T Consensus 335 ~l~-----~~~~~~~~~~~gH~~~~e~p----~~~~~~i~~fl~~ 370 (371)
T PRK14875 335 GLP-----DGVAVHVLPGAGHMPQMEAA----ADVNRLLAEFLGK 370 (371)
T ss_pred hcc-----CCCeEEEeCCCCCChhhhCH----HHHHHHHHHHhcc
Confidence 432 45789999999999997665 6688888899864
No 47
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.95 E-value=3.6e-26 Score=177.71 Aligned_cols=256 Identities=16% Similarity=0.203 Sum_probs=154.9
Q ss_pred eEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCC----cchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCCh
Q 020630 33 EYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSD----TGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDM 107 (323)
Q Consensus 33 ~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~----~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~ 107 (323)
..+. .+| .+....+.|.+ ..++.||++||++.. .. .+..+++.|+++||+|+++|+||||.|.+.. .++
T Consensus 5 ~~~~-~~~~~l~g~~~~p~~-~~~~~vv~i~gg~~~~~g~~~-~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~---~~~ 78 (274)
T TIGR03100 5 LTFS-CEGETLVGVLHIPGA-SHTTGVLIVVGGPQYRVGSHR-QFVLLARRLAEAGFPVLRFDYRGMGDSEGEN---LGF 78 (274)
T ss_pred EEEE-cCCcEEEEEEEcCCC-CCCCeEEEEeCCccccCCchh-HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC---CCH
Confidence 3444 345 88888888765 345677777876532 22 4567889999999999999999999987542 367
Q ss_pred HHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccc
Q 020630 108 EKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFG 187 (323)
Q Consensus 108 ~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (323)
+++.+|+.++++.+....+ ...+++++||||||.+++.+|... .. |+++|+++|+......................
T Consensus 79 ~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~-v~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 155 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LR-VAGLVLLNPWVRTEAAQAASRIRHYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CC-ccEEEEECCccCCcccchHHHHHHHHHHHHhC
Confidence 8888999999999976531 024799999999999999998653 45 99999999875433221111110100000000
Q ss_pred cccccccCCCcccccccccChhhHHHhhcCCccc--CCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCch
Q 020630 188 LADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRY--TGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPT 265 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~ 265 (323)
. ..+.. +.............+....... ........ .........+..+++|+++++|.+|...+ .
T Consensus 156 ~-~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~P~ll~~g~~D~~~~-~ 223 (274)
T TIGR03100 156 A-DFWRK-----LLSGEVNLGSSLRGLGDALLKARQKGDEVAHG-----GLAERMKAGLERFQGPVLFILSGNDLTAQ-E 223 (274)
T ss_pred h-HHHHH-----hcCCCccHHHHHHHHHHHHHhhhhcCCCcccc-----hHHHHHHHHHHhcCCcEEEEEcCcchhHH-H
Confidence 0 00000 0000000000000000000000 00000000 02223445566779999999999998763 2
Q ss_pred hH------HHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 266 SS------KLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 266 ~~------~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
.. ..+.+.+..+++++..+++++|++.. +...+++.+.|.+||+
T Consensus 224 ~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~---e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 224 FADSVLGEPAWRGALEDPGIERVEIDGADHTFSD---RVWREWVAARTTEWLR 273 (274)
T ss_pred HHHHhccChhhHHHhhcCCeEEEecCCCCccccc---HHHHHHHHHHHHHHHh
Confidence 21 34444454578999999999998862 4556889999999995
No 48
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.95 E-value=3.1e-27 Score=220.13 Aligned_cols=245 Identities=16% Similarity=0.167 Sum_probs=155.0
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCC-------CCCCChHHHHhhHHHHHHHHHhhCC
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIR-------CYLGDMEKVAASSLSFFKHVRHSEP 126 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-------~~~~~~~~~~~d~~~~i~~l~~~~~ 126 (323)
.+++|||+||++++.. .|..+.+.|.+. |+|+++|+||||.|.... ...++++.+++++.++++.+..+
T Consensus 1370 ~~~~vVllHG~~~s~~-~w~~~~~~L~~~-~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l~~~-- 1445 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE-DWIPIMKAISGS-ARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHITPG-- 1445 (1655)
T ss_pred CCCeEEEECCCCCCHH-HHHHHHHHHhCC-CEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHhCCC--
Confidence 4689999999999987 899999999764 999999999999997532 12357899999999999987643
Q ss_pred CCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHH---HHhhcc-----cccccccccCCCc
Q 020630 127 YRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHL---FMYGLL-----FGLADTWAAMPDN 198 (323)
Q Consensus 127 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~ 198 (323)
+++|+||||||.+++.++.++|++ |+++|++++............... .....+ ..+...+ ...
T Consensus 1446 ----~v~LvGhSmGG~iAl~~A~~~P~~-V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---~~~ 1517 (1655)
T PLN02980 1446 ----KVTLVGYSMGARIALYMALRFSDK-IEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENW---YSG 1517 (1655)
T ss_pred ----CEEEEEECHHHHHHHHHHHhChHh-hCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHh---ccH
Confidence 899999999999999999999999 999999987543322111000000 000000 0000000 000
Q ss_pred ccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHh-----hHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHH
Q 020630 199 KMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARV-----CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEK 273 (323)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~ 273 (323)
.........+.......... .. ............ ..+..+.+.++++|+|+|+|++|..++ +.+..+.+.
T Consensus 1518 ~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~ 1592 (1655)
T PLN02980 1518 ELWKSLRNHPHFNKIVASRL---LH-KDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYRE 1592 (1655)
T ss_pred HHhhhhccCHHHHHHHHHHH---hc-CCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHH
Confidence 00000000000111110000 00 000011111111 112345678899999999999999875 566677777
Q ss_pred hcCC----------CCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHhhcC
Q 020630 274 ASSA----------DKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVERCG 319 (323)
Q Consensus 274 ~~~~----------~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~~~ 319 (323)
++.. .+++++++++||.+++++| +.+.+.|.+||.+......
T Consensus 1593 i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~P----e~f~~~I~~FL~~~~~~~~ 1644 (1655)
T PLN02980 1593 IGKSKESGNDKGKEIIEIVEIPNCGHAVHLENP----LPVIRALRKFLTRLHNSST 1644 (1655)
T ss_pred ccccccccccccccceEEEEECCCCCchHHHCH----HHHHHHHHHHHHhccccCC
Confidence 6321 2589999999999997666 6699999999998654443
No 49
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=172.58 Aligned_cols=259 Identities=16% Similarity=0.161 Sum_probs=172.4
Q ss_pred cEEEEEe-cCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHH
Q 020630 41 KLFTQSF-LPLDQKVKATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFF 118 (323)
Q Consensus 41 ~l~~~~~-~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i 118 (323)
++.|..+ ...+....|+++++||+.++.. .|..+...|+.. |-.|+++|.|.||.|+..... +.+.+++|+..+|
T Consensus 37 ~l~y~~~~~~~~~~~~Pp~i~lHGl~GS~~-Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~h--~~~~ma~dv~~Fi 113 (315)
T KOG2382|consen 37 RLAYDSVYSSENLERAPPAIILHGLLGSKE-NWRSVAKNLSRKLGRDVYAVDVRNHGSSPKITVH--NYEAMAEDVKLFI 113 (315)
T ss_pred ccceeeeecccccCCCCceEEecccccCCC-CHHHHHHHhcccccCceEEEecccCCCCcccccc--CHHHHHHHHHHHH
Confidence 5666665 4433456899999999999987 999999999876 789999999999999877665 6899999999999
Q ss_pred HHHHhhCCCCCCCEEEEEechhH-HHHHHHHhhcCCCCeeEEEEccCccC-CCCCCchhHHHHHHhhcccccccccccCC
Q 020630 119 KHVRHSEPYRDLPAFLFGESMGG-AATMLMYFQSEPNTWTGLIFSAPLFV-IPENMKPSKLHLFMYGLLFGLADTWAAMP 196 (323)
Q Consensus 119 ~~l~~~~~~~~~~~~l~G~S~Gg-~~a~~~a~~~p~~~v~~~il~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (323)
+..+.... ..+++++|||||| .+++..+...|+. +..+|++.-... ......... .+...+...........
T Consensus 114 ~~v~~~~~--~~~~~l~GHsmGG~~~~m~~t~~~p~~-~~rliv~D~sP~~~~~~~~e~~---e~i~~m~~~d~~~~~~~ 187 (315)
T KOG2382|consen 114 DGVGGSTR--LDPVVLLGHSMGGVKVAMAETLKKPDL-IERLIVEDISPGGVGRSYGEYR---ELIKAMIQLDLSIGVSR 187 (315)
T ss_pred HHcccccc--cCCceecccCcchHHHHHHHHHhcCcc-cceeEEEecCCccCCcccchHH---HHHHHHHhccccccccc
Confidence 99974321 3489999999999 7777778888998 888887654432 222221111 11111111111100001
Q ss_pred Cc----ccccccccChhhHHHhhcCCcc------cCCCCCchhHHHHHHhh--HHHHhcC--CcccccEEEEeeCCCccc
Q 020630 197 DN----KMVGKAIKDPEKLKVIASNPRR------YTGKPRVGTMREIARVC--QYIQDNF--SKVTVPFLTVHGTADGVT 262 (323)
Q Consensus 197 ~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~P~l~i~g~~D~~~ 262 (323)
.. ..+.....+.....++..+... +..........+++... ..+...+ .....||+++.|.++..+
T Consensus 188 ~rke~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv 267 (315)
T KOG2382|consen 188 GRKEALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFV 267 (315)
T ss_pred cHHHHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCc
Confidence 11 1112223344444444444332 11112222333333321 1122223 556889999999999999
Q ss_pred CchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 263 CPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
+.+.-..+...+ |+++++.++++||+.++|+| +.+.+.|.+|+.++
T Consensus 268 ~~~~~~~~~~~f--p~~e~~~ld~aGHwVh~E~P----~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 268 PDEHYPRMEKIF--PNVEVHELDEAGHWVHLEKP----EEFIESISEFLEEP 313 (315)
T ss_pred ChhHHHHHHHhc--cchheeecccCCceeecCCH----HHHHHHHHHHhccc
Confidence 999888888888 88999999999999997777 55888888888754
No 50
>PRK10566 esterase; Provisional
Probab=99.94 E-value=3.3e-25 Score=171.17 Aligned_cols=210 Identities=15% Similarity=0.133 Sum_probs=135.8
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC-CCC-----ChHHHHhhHHHHHHHHHhhCC
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC-YLG-----DMEKVAASSLSFFKHVRHSEP 126 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-~~~-----~~~~~~~d~~~~i~~l~~~~~ 126 (323)
++.|+||++||++++.. .|..+++.|+++||+|+++|+||||.+..... ... ......+|+.++++++.....
T Consensus 25 ~~~p~vv~~HG~~~~~~-~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (249)
T PRK10566 25 TPLPTVFFYHGFTSSKL-VYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEGW 103 (249)
T ss_pred CCCCEEEEeCCCCcccc-hHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999998876 78889999999999999999999997642211 100 112335677778888776544
Q ss_pred CCCCCEEEEEechhHHHHHHHHhhcCCCCeeEE-EEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccc
Q 020630 127 YRDLPAFLFGESMGGAATMLMYFQSEPNTWTGL-IFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAI 205 (323)
Q Consensus 127 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
++..+++++|||+||.+++.++.++|+ +++. +++++... . ...... +.+....
T Consensus 104 ~~~~~i~v~G~S~Gg~~al~~~~~~~~--~~~~~~~~~~~~~------~-----~~~~~~--~~~~~~~----------- 157 (249)
T PRK10566 104 LLDDRLAVGGASMGGMTALGIMARHPW--VKCVASLMGSGYF------T-----SLARTL--FPPLIPE----------- 157 (249)
T ss_pred cCccceeEEeecccHHHHHHHHHhCCC--eeEEEEeeCcHHH------H-----HHHHHh--ccccccc-----------
Confidence 556799999999999999999998887 4444 34332210 0 000000 0000000
Q ss_pred cChhhHHHhhcCCcccCCCCCchhHHHHHHhhH--HHHhcCCcc-cccEEEEeeCCCcccCchhHHHHHHHhcCC----C
Q 020630 206 KDPEKLKVIASNPRRYTGKPRVGTMREIARVCQ--YIQDNFSKV-TVPFLTVHGTADGVTCPTSSKLLYEKASSA----D 278 (323)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~----~ 278 (323)
.+. ............. +....+.++ ++|+|+++|++|.++|++.++.+.+.+... +
T Consensus 158 -~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~ 220 (249)
T PRK10566 158 -TAA----------------QQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKN 220 (249)
T ss_pred -ccc----------------cHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcc
Confidence 000 0000000000000 012234555 689999999999999999999999888432 3
Q ss_pred CcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 279 KSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 279 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
+++..++++||.+. ....+.+.+||+++
T Consensus 221 ~~~~~~~~~~H~~~--------~~~~~~~~~fl~~~ 248 (249)
T PRK10566 221 LTCLWEPGVRHRIT--------PEALDAGVAFFRQH 248 (249)
T ss_pred eEEEecCCCCCccC--------HHHHHHHHHHHHhh
Confidence 57788999999875 23678899999865
No 51
>PRK05855 short chain dehydrogenase; Validated
Probab=99.94 E-value=1.2e-25 Score=195.00 Aligned_cols=263 Identities=14% Similarity=0.106 Sum_probs=153.6
Q ss_pred eEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCC-CCCCChHHH
Q 020630 33 EYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIR-CYLGDMEKV 110 (323)
Q Consensus 33 ~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-~~~~~~~~~ 110 (323)
.++...+| +|+|..+++.+ +|+|||+||++++.. .|..+.+.|. .||+|+++|+||||.|+... ...++++++
T Consensus 5 ~~~~~~~g~~l~~~~~g~~~---~~~ivllHG~~~~~~-~w~~~~~~L~-~~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~ 79 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGDPD---RPTVVLVHGYPDNHE-VWDGVAPLLA-DRFRVVAYDVRGAGRSSAPKRTAAYTLARL 79 (582)
T ss_pred EEEEeeCCEEEEEEEcCCCC---CCeEEEEcCCCchHH-HHHHHHHHhh-cceEEEEecCCCCCCCCCCCcccccCHHHH
Confidence 44556788 99999988644 789999999998876 8999999994 57999999999999998543 234589999
Q ss_pred HhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc--CCCCeeEEEEccCccCCC------CCC---chhHHHH
Q 020630 111 AASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS--EPNTWTGLIFSAPLFVIP------ENM---KPSKLHL 179 (323)
Q Consensus 111 ~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~v~~~il~~~~~~~~------~~~---~~~~~~~ 179 (323)
++|+..+++.+... .+++|+||||||.+++.++... +.. +..++.+++..... ... .......
T Consensus 80 a~dl~~~i~~l~~~-----~~~~lvGhS~Gg~~a~~~a~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK05855 80 ADDFAAVIDAVSPD-----RPVHLLAHDWGSIQGWEAVTRPRAAGR-IASFTSVSGPSLDHVGFWLRSGLRRPTPRRLAR 153 (582)
T ss_pred HHHHHHHHHHhCCC-----CcEEEEecChHHHHHHHHHhCccchhh-hhhheeccCCchHHHHHHHhhcccccchhhhhH
Confidence 99999999998643 2599999999999998887762 333 44444433221100 000 0000000
Q ss_pred HHhhcccccccc-cccCCCccc-ccccccChhhHHHhhcCCcccCCC-------CCchhHHHHHHh---hHHHHhcCCcc
Q 020630 180 FMYGLLFGLADT-WAAMPDNKM-VGKAIKDPEKLKVIASNPRRYTGK-------PRVGTMREIARV---CQYIQDNFSKV 247 (323)
Q Consensus 180 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~~~ 247 (323)
............ ......... ...... ................. .........+.. ..........+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (582)
T PRK05855 154 ALGQLLRSWYIYLFHLPVLPELLWRLGLG-RAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYT 232 (582)
T ss_pred HHHHHhhhHHHHHHhCCCCcHHHhccchh-hHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCc
Confidence 000000000000 000000000 000000 00000000000000000 000000000000 00111234558
Q ss_pred cccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 248 TVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 248 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
++|+++|+|++|.++|++..+.+.+.+ ++.++++++ +||+.++++| +.+.+.|.+|+.+.
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~e~p----~~~~~~i~~fl~~~ 292 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWV--PRLWRREIK-AGHWLPMSHP----QVLAAAVAEFVDAV 292 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccC--CcceEEEcc-CCCcchhhCh----hHHHHHHHHHHHhc
Confidence 999999999999999999888887776 567777776 6999997766 55888888888764
No 52
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.94 E-value=6.9e-26 Score=158.25 Aligned_cols=237 Identities=18% Similarity=0.236 Sum_probs=178.0
Q ss_pred cccccCCccceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHH-hcCCcEEEEeccccCcCCCC
Q 020630 22 YYTSQGVRNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISY-ATWGYAVFAADLLGHGRSDG 99 (323)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l-~~~g~~vi~~d~~G~G~s~~ 99 (323)
.++..++++++..+.+.|. +|..+....+ .++|+++++||..++.. ..-.+++.+ ..-+.+|+.+++||+|.|.+
T Consensus 46 tP~~~n~pye~i~l~T~D~vtL~a~~~~~E--~S~pTlLyfh~NAGNmG-hr~~i~~~fy~~l~mnv~ivsYRGYG~S~G 122 (300)
T KOG4391|consen 46 TPKEFNMPYERIELRTRDKVTLDAYLMLSE--SSRPTLLYFHANAGNMG-HRLPIARVFYVNLKMNVLIVSYRGYGKSEG 122 (300)
T ss_pred CccccCCCceEEEEEcCcceeEeeeeeccc--CCCceEEEEccCCCccc-chhhHHHHHHHHcCceEEEEEeeccccCCC
Confidence 3567889999999999999 9988877743 57999999999998876 444444443 34479999999999999998
Q ss_pred CCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHH
Q 020630 100 IRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHL 179 (323)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~ 179 (323)
.+ +-+.+.-|..++++++..+...+..++++.|-|.||.+|+.+|+++.++ +.++|+-+.+...+....+..
T Consensus 123 sp----sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~r-i~~~ivENTF~SIp~~~i~~v--- 194 (300)
T KOG4391|consen 123 SP----SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDR-ISAIIVENTFLSIPHMAIPLV--- 194 (300)
T ss_pred Cc----cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhh-eeeeeeechhccchhhhhhee---
Confidence 76 4455667888999999988777788999999999999999999999998 999999998776543221100
Q ss_pred HHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCC
Q 020630 180 FMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTAD 259 (323)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D 259 (323)
..+ .. ..+ ..+. +...-.....+...+.|.|++.|.+|
T Consensus 195 ------~p~-------~~-k~i---------~~lc-------------------~kn~~~S~~ki~~~~~P~LFiSGlkD 232 (300)
T KOG4391|consen 195 ------FPF-------PM-KYI---------PLLC-------------------YKNKWLSYRKIGQCRMPFLFISGLKD 232 (300)
T ss_pred ------ccc-------hh-hHH---------HHHH-------------------HHhhhcchhhhccccCceEEeecCcc
Confidence 000 00 000 0000 00000012334456889999999999
Q ss_pred cccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 260 GVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
.+||+...+.+++.+++...++.++|++.|.-... .+-..+.|.+||.+...
T Consensus 233 elVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i-----~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 233 ELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWI-----CDGYFQAIEDFLAEVVK 284 (300)
T ss_pred ccCCcHHHHHHHHhCchhhhhheeCCCCccCceEE-----eccHHHHHHHHHHHhcc
Confidence 99999999999999988889999999999987632 24488999999998765
No 53
>PLN02872 triacylglycerol lipase
Probab=99.94 E-value=1.5e-25 Score=180.16 Aligned_cols=287 Identities=13% Similarity=0.141 Sum_probs=171.7
Q ss_pred ccccccCCccceeEEecCCC-cEEEEEecCCC----CCCceEEEEecCCCCCcchhh------HHHHHHHhcCCcEEEEe
Q 020630 21 EYYTSQGVRNGKEYFETPNG-KLFTQSFLPLD----QKVKATVYMTHGYGSDTGWMF------QKICISYATWGYAVFAA 89 (323)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~----~~~~~~vv~~hG~~~~~~~~~------~~~~~~l~~~g~~vi~~ 89 (323)
++....+.+.+++.+++.|| .|...+..+.. ...+|+|+++||+++++. .| +.++..|+++||+|+++
T Consensus 35 ~~i~~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~-~w~~~~~~~sla~~La~~GydV~l~ 113 (395)
T PLN02872 35 QLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGD-AWFLNSPEQSLGFILADHGFDVWVG 113 (395)
T ss_pred HHHHHcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCccccccc-ceeecCcccchHHHHHhCCCCcccc
Confidence 34467899999999999999 88888764321 134689999999987765 44 34666788999999999
Q ss_pred ccccCcCCCCC-------C-CCCCChHHHH-hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC---CCee
Q 020630 90 DLLGHGRSDGI-------R-CYLGDMEKVA-ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP---NTWT 157 (323)
Q Consensus 90 d~~G~G~s~~~-------~-~~~~~~~~~~-~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~~v~ 157 (323)
|+||++.|.+. . ...+++++++ .|+.++++++.... ..+++++||||||.+++.++ .+|+ . |+
T Consensus 114 n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~-v~ 188 (395)
T PLN02872 114 NVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEM-VE 188 (395)
T ss_pred cccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHH-HH
Confidence 99998866321 1 1134788888 89999999986532 35899999999999998655 5565 4 88
Q ss_pred EEEEccCccCCCCCCchhHH-HH--HHhhcccccccccccCCCcccc----cccccCh----h-hHHHhhcCC-------
Q 020630 158 GLIFSAPLFVIPENMKPSKL-HL--FMYGLLFGLADTWAAMPDNKMV----GKAIKDP----E-KLKVIASNP------- 218 (323)
Q Consensus 158 ~~il~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~-~~~~~~~~~------- 218 (323)
.+++++|.........+... .. .....+. ........+..... ....... . ...+...+.
T Consensus 189 ~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~ 267 (395)
T PLN02872 189 AAALLCPISYLDHVTAPLVLRMVFMHLDQMVV-AMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRI 267 (395)
T ss_pred HHHHhcchhhhccCCCHHHHHHHHHhHHHHHH-HhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhh
Confidence 88889888765332222110 00 0000000 00000000000000 0000000 0 000000000
Q ss_pred ----cccCCCCCchhHHHHHHh----------------h------HHHHhcCCcc--cccEEEEeeCCCcccCchhHHHH
Q 020630 219 ----RRYTGKPRVGTMREIARV----------------C------QYIQDNFSKV--TVPFLTVHGTADGVTCPTSSKLL 270 (323)
Q Consensus 219 ----~~~~~~~~~~~~~~~~~~----------------~------~~~~~~~~~~--~~P~l~i~g~~D~~~~~~~~~~~ 270 (323)
...........+..+... . ....-.++++ ++|+++++|++|.+++++.++.+
T Consensus 268 ~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l 347 (395)
T PLN02872 268 DYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHT 347 (395)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHH
Confidence 000000000000000000 0 0011235666 58999999999999999999999
Q ss_pred HHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 271 YEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 271 ~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
.+.++. ..+++.+++++|..++- .++.++.+.+.|.+|+++..+
T Consensus 348 ~~~Lp~-~~~l~~l~~~gH~dfi~-~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 348 LAELPS-KPELLYLENYGHIDFLL-STSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred HHHCCC-ccEEEEcCCCCCHHHHh-CcchHHHHHHHHHHHHHHhhh
Confidence 999842 25888999999973321 134567899999999987654
No 54
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.94 E-value=2.5e-25 Score=179.45 Aligned_cols=273 Identities=12% Similarity=0.090 Sum_probs=164.2
Q ss_pred ceeEEecCCCcEEEEEecCCC-CCCceEEEEecCCCCCcchh-----hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCC
Q 020630 31 GKEYFETPNGKLFTQSFLPLD-QKVKATVYMTHGYGSDTGWM-----FQKICISYATWGYAVFAADLLGHGRSDGIRCYL 104 (323)
Q Consensus 31 ~~~~~~~~~g~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~~-----~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~ 104 (323)
+...+...++.+..+.|.|.. ...+++||++||+..+. +. +..+++.|.++||+|+++|++|+|.+...
T Consensus 37 ~~~~~v~~~~~~~l~~~~~~~~~~~~~pvl~v~~~~~~~-~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~---- 111 (350)
T TIGR01836 37 TPKEVVYREDKVVLYRYTPVKDNTHKTPLLIVYALVNRP-YMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRY---- 111 (350)
T ss_pred CCCceEEEcCcEEEEEecCCCCcCCCCcEEEeccccccc-eeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhc----
Confidence 344445555555555566643 23456799999986433 23 36799999999999999999999987532
Q ss_pred CChHHHHh-hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHH-----
Q 020630 105 GDMEKVAA-SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLH----- 178 (323)
Q Consensus 105 ~~~~~~~~-d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~----- 178 (323)
.++++++. ++.++++++....+ ..+++++||||||.+++.++..+|++ |+++|+++++.............
T Consensus 112 ~~~~d~~~~~~~~~v~~l~~~~~--~~~i~lvGhS~GG~i~~~~~~~~~~~-v~~lv~~~~p~~~~~~~~~~~~~~~~~~ 188 (350)
T TIGR01836 112 LTLDDYINGYIDKCVDYICRTSK--LDQISLLGICQGGTFSLCYAALYPDK-IKNLVTMVTPVDFETPGNMLSNWARHVD 188 (350)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC--CCcccEEEECHHHHHHHHHHHhCchh-eeeEEEeccccccCCCCchhhhhccccC
Confidence 26777764 48888888877654 56899999999999999999999998 99999999887754322111000
Q ss_pred -HHHhhcccccccc-----cc-cCCCccccc------ccccChh-hHHHhhcCCcccCC-CCCchhHHHHHHh----hHH
Q 020630 179 -LFMYGLLFGLADT-----WA-AMPDNKMVG------KAIKDPE-KLKVIASNPRRYTG-KPRVGTMREIARV----CQY 239 (323)
Q Consensus 179 -~~~~~~~~~~~~~-----~~-~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~ 239 (323)
.........+... +. ..+...... ....++. .............. ........++... ...
T Consensus 189 ~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l 268 (350)
T TIGR01836 189 IDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGL 268 (350)
T ss_pred HHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcc
Confidence 0000000000000 00 000000000 0001111 01110000000000 0011111111111 000
Q ss_pred H---------HhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHH
Q 020630 240 I---------QDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREW 310 (323)
Q Consensus 240 ~---------~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~f 310 (323)
. ...+.++++|+++++|++|.++|++.++.+.+.+++.+.++++++ +||...+.++ ...+++.+.|.+|
T Consensus 269 ~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~-~~~~~v~~~i~~w 346 (350)
T TIGR01836 269 INGEVEIGGRKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSSEDYTELSFP-GGHIGIYVSG-KAQKEVPPAIGKW 346 (350)
T ss_pred cCCeeEECCEEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCCCCeEEEEcC-CCCEEEEECc-hhHhhhhHHHHHH
Confidence 0 113567899999999999999999999999998865566777787 6899987665 3568899999999
Q ss_pred HHH
Q 020630 311 IDE 313 (323)
Q Consensus 311 l~~ 313 (323)
|.+
T Consensus 347 l~~ 349 (350)
T TIGR01836 347 LQA 349 (350)
T ss_pred HHh
Confidence 975
No 55
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.93 E-value=3.8e-25 Score=177.93 Aligned_cols=262 Identities=12% Similarity=0.050 Sum_probs=159.4
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcc------------hhhHHHHH---HHhcCCcEEEEeccccCcCCCCC-----
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTG------------WMFQKICI---SYATWGYAVFAADLLGHGRSDGI----- 100 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~------------~~~~~~~~---~l~~~g~~vi~~d~~G~G~s~~~----- 100 (323)
+|.|..||..+....++||++|++++++. -.|..++- .|....|.||++|..|-|.|..+
T Consensus 42 ~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~t 121 (389)
T PRK06765 42 QMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITT 121 (389)
T ss_pred eEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCC
Confidence 78999999866455689999999988541 02444332 34444599999999987653211
Q ss_pred ---------------CCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEE-EEEechhHHHHHHHHhhcCCCCeeEEEEccC
Q 020630 101 ---------------RCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAF-LFGESMGGAATMLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 101 ---------------~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~-l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~ 164 (323)
....++++++++++.++++.++.+ ++. ++||||||++++.+|.++|++ |+++|++++
T Consensus 122 gp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~------~~~~vvG~SmGG~ial~~a~~~P~~-v~~lv~ia~ 194 (389)
T PRK06765 122 GPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIA------RLHAVMGPSMGGMQAQEWAVHYPHM-VERMIGVIG 194 (389)
T ss_pred CCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCC------CceEEEEECHHHHHHHHHHHHChHh-hheEEEEec
Confidence 112358999999999999998765 675 999999999999999999999 999999987
Q ss_pred ccCCCCCC-chh-HHHHHHhhccccccc-ccc--cCCCc------ccccccccC-h------------------------
Q 020630 165 LFVIPENM-KPS-KLHLFMYGLLFGLAD-TWA--AMPDN------KMVGKAIKD-P------------------------ 208 (323)
Q Consensus 165 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~--~~~~~------~~~~~~~~~-~------------------------ 208 (323)
........ ... .........-..+.. .+. ..+.. ......... .
T Consensus 195 ~~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~ 274 (389)
T PRK06765 195 NPQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLT 274 (389)
T ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchh
Confidence 65543221 000 000000000000000 000 00000 000000000 0
Q ss_pred hhHHHhhcCCcccCCCCCchhHHHHHHhhH---------HHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcC--C
Q 020630 209 EKLKVIASNPRRYTGKPRVGTMREIARVCQ---------YIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASS--A 277 (323)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~--~ 277 (323)
.....+......+........+..+.+..+ ++.+.+.++++|+|+|+|++|.++|++.++.+.+.++. +
T Consensus 275 ~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~ 354 (389)
T PRK06765 275 SFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGK 354 (389)
T ss_pred hHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCC
Confidence 000110000000111111111222222211 23456778999999999999999999999999888842 3
Q ss_pred CCcEEEecC-CCccccccCCchhHHHHHHHHHHHHHH
Q 020630 278 DKSIKIYDG-MYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 278 ~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+++++++++ +||..++++| +++.+.|.+||++
T Consensus 355 ~a~l~~I~s~~GH~~~le~p----~~~~~~I~~FL~~ 387 (389)
T PRK06765 355 YAEVYEIESINGHMAGVFDI----HLFEKKIYEFLNR 387 (389)
T ss_pred CeEEEEECCCCCcchhhcCH----HHHHHHHHHHHcc
Confidence 689999985 8999997665 6688999999875
No 56
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.93 E-value=1e-24 Score=158.19 Aligned_cols=218 Identities=20% Similarity=0.258 Sum_probs=162.0
Q ss_pred cceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhc-CCcEEEEeccccCcCCCCCCCCCCCh
Q 020630 30 NGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYAT-WGYAVFAADLLGHGRSDGIRCYLGDM 107 (323)
Q Consensus 30 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~-~g~~vi~~d~~G~G~s~~~~~~~~~~ 107 (323)
.+....++..| .+....+.++. ...+++++.||...+.. ....+...|.. -+++++++|++|+|.|.+.+..
T Consensus 35 v~v~~~~t~rgn~~~~~y~~~~~-~~~~~lly~hGNa~Dlg-q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE---- 108 (258)
T KOG1552|consen 35 VEVFKVKTSRGNEIVCMYVRPPE-AAHPTLLYSHGNAADLG-QMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSE---- 108 (258)
T ss_pred cceEEeecCCCCEEEEEEEcCcc-ccceEEEEcCCcccchH-HHHHHHHHHhhcccceEEEEecccccccCCCccc----
Confidence 34556678888 77777777765 45699999999966655 33344445544 2699999999999999987643
Q ss_pred HHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccc
Q 020630 108 EKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFG 187 (323)
Q Consensus 108 ~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (323)
....+|+.++.++++.+++ ..++++|+|+|+|...++.+|.+.| ++++|+.+|....-......
T Consensus 109 ~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~---~~alVL~SPf~S~~rv~~~~------------ 172 (258)
T KOG1552|consen 109 RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP---LAAVVLHSPFTSGMRVAFPD------------ 172 (258)
T ss_pred ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC---cceEEEeccchhhhhhhccC------------
Confidence 3667899999999999985 5789999999999999999999988 78999999986532111100
Q ss_pred cccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhH
Q 020630 188 LADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSS 267 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~ 267 (323)
. ...+.-. .+. ..+..+.++||+|++||++|.+++....
T Consensus 173 -~-------~~~~~~d-----------------------------~f~----~i~kI~~i~~PVLiiHgtdDevv~~sHg 211 (258)
T KOG1552|consen 173 -T-------KTTYCFD-----------------------------AFP----NIEKISKITCPVLIIHGTDDEVVDFSHG 211 (258)
T ss_pred -c-------ceEEeec-----------------------------ccc----ccCcceeccCCEEEEecccCceeccccc
Confidence 0 0000000 000 1356788899999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 268 KLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
..+.+..+.+ .+..++.|+||.... ...++...+..|+.....
T Consensus 212 ~~Lye~~k~~-~epl~v~g~gH~~~~-----~~~~yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 212 KALYERCKEK-VEPLWVKGAGHNDIE-----LYPEYIEHLRRFISSVLP 254 (258)
T ss_pred HHHHHhcccc-CCCcEEecCCCcccc-----cCHHHHHHHHHHHHHhcc
Confidence 9999998543 688999999999982 234578888888876543
No 57
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.93 E-value=4.5e-24 Score=160.16 Aligned_cols=287 Identities=13% Similarity=0.111 Sum_probs=174.2
Q ss_pred cccCCccceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCCCC
Q 020630 24 TSQGVRNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSDGIR 101 (323)
Q Consensus 24 ~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~ 101 (323)
....+.+....+.++|| .+......++....+|.||++||+.+++ +.+.+.+.+.+.++||.|+++++|||+.+....
T Consensus 43 r~~~~~~~re~v~~pdg~~~~ldw~~~p~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~ 122 (345)
T COG0429 43 RKPKVAYTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTS 122 (345)
T ss_pred cccccccceEEEEcCCCCEEEEeeccCccccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccC
Confidence 35666777888999999 5555555544446678999999997764 325567888999999999999999999997644
Q ss_pred CCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhH-HHHHHHHhhcCCCCeeEEEEccCccCCC-------CCCc
Q 020630 102 CYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGG-AATMLMYFQSEPNTWTGLIFSAPLFVIP-------ENMK 173 (323)
Q Consensus 102 ~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg-~~a~~~a~~~p~~~v~~~il~~~~~~~~-------~~~~ 173 (323)
...+ -....+|+..++++++...+ ..++..+|.|+|| +++..++..-.+..+.+.+.++.+.++. ....
T Consensus 123 p~~y-h~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s 199 (345)
T COG0429 123 PRLY-HSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFS 199 (345)
T ss_pred ccee-cccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchh
Confidence 3332 23345899999999988776 7899999999999 5555555543333366666665544421 0000
Q ss_pred hhHHHHHHhhcccccc-cccccCCCcccccc-cccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccE
Q 020630 174 PSKLHLFMYGLLFGLA-DTWAAMPDNKMVGK-AIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPF 251 (323)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 251 (323)
.......+...+.... ...... ....... ...-+....+...+.........+....++++... ....+.+|.+|+
T Consensus 200 ~~ly~r~l~~~L~~~~~~kl~~l-~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aS-s~~~L~~Ir~Pt 277 (345)
T COG0429 200 LRLYSRYLLRNLKRNAARKLKEL-EPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQAS-SLPLLPKIRKPT 277 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhc-CcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcc-ccccccccccce
Confidence 0000011111111100 000000 0000000 00000011111222222222222333444444443 346789999999
Q ss_pred EEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHH-HHHHHHHHHHHHHHh
Q 020630 252 LTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENAN-LVLKDMREWIDERVE 316 (323)
Q Consensus 252 l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~-~~~~~i~~fl~~~~~ 316 (323)
|+|++.+|++++++........ .++++.+.+-+.+||..++........ ...+.+.+|++....
T Consensus 278 Lii~A~DDP~~~~~~iP~~~~~-~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 278 LIINAKDDPFMPPEVIPKLQEM-LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred EEEecCCCCCCChhhCCcchhc-CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 9999999999998776655543 348899999999999999875433332 567888899887654
No 58
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.92 E-value=9.8e-25 Score=150.78 Aligned_cols=233 Identities=13% Similarity=0.035 Sum_probs=156.7
Q ss_pred CCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEeccccCcCCCCCCCCCCChH---HHHh
Q 020630 38 PNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAADLLGHGRSDGIRCYLGDME---KVAA 112 (323)
Q Consensus 38 ~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d~~G~G~s~~~~~~~~~~~---~~~~ 112 (323)
.+| +|.|..+|.. ...|+++.|.-++....|.+....|.+. -+.++++|.||+|.|..+.... ..+ .-++
T Consensus 28 vng~ql~y~~~G~G----~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf-~~~ff~~Da~ 102 (277)
T KOG2984|consen 28 VNGTQLGYCKYGHG----PNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKF-EVQFFMKDAE 102 (277)
T ss_pred ecCceeeeeecCCC----CceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccc-hHHHHHHhHH
Confidence 467 9999999875 4578999998777544777766666554 3899999999999998765432 333 3445
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhH-HHHHHhhcccccccc
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSK-LHLFMYGLLFGLADT 191 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (323)
+...+++.++.+ ++.++|+|-||..|+.+|+++++. |.++|+.++............ .++.......+
T Consensus 103 ~avdLM~aLk~~------~fsvlGWSdGgiTalivAak~~e~-v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r---- 171 (277)
T KOG2984|consen 103 YAVDLMEALKLE------PFSVLGWSDGGITALIVAAKGKEK-VNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSAR---- 171 (277)
T ss_pred HHHHHHHHhCCC------CeeEeeecCCCeEEEEeeccChhh-hhhheeecccceecchhHHHHhchHHHhhhhhh----
Confidence 555666666644 899999999999999999999999 999999887654432211100 00000000000
Q ss_pred cccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhH---------HHHhcCCcccccEEEEeeCCCccc
Q 020630 192 WAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQ---------YIQDNFSKVTVPFLTVHGTADGVT 262 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~P~l~i~g~~D~~~ 262 (323)
... .+ ...+..+... .....+..... -.+..+.+++||+|+++|++|+++
T Consensus 172 ~R~----P~-e~~Yg~e~f~----------------~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~ 230 (277)
T KOG2984|consen 172 GRQ----PY-EDHYGPETFR----------------TQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFC 230 (277)
T ss_pred hcc----hH-HHhcCHHHHH----------------HHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCC
Confidence 000 00 0000000000 00011111111 124567899999999999999999
Q ss_pred CchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 263 CPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+...+-.+.... +.+++.++++++|.++ ..++++++..+.+||++
T Consensus 231 ~~~hv~fi~~~~--~~a~~~~~peGkHn~h----Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 231 GDPHVCFIPVLK--SLAKVEIHPEGKHNFH----LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CCCCccchhhhc--ccceEEEccCCCccee----eechHHHHHHHHHHHhc
Confidence 999888888777 7789999999999999 56778899999999975
No 59
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.91 E-value=1.8e-23 Score=179.26 Aligned_cols=250 Identities=16% Similarity=0.116 Sum_probs=169.2
Q ss_pred ccCCccceeEEecCCC-cEEEEEecCCCCCC---ceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCC-
Q 020630 25 SQGVRNGKEYFETPNG-KLFTQSFLPLDQKV---KATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSD- 98 (323)
Q Consensus 25 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~---~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~- 98 (323)
......+...+++.|| +|.++.+.|.+..+ -|+||++||.+... .+.+....+.|+.+||.|+.+++||.+.-.
T Consensus 360 ~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~ 439 (620)
T COG1506 360 VKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGR 439 (620)
T ss_pred cccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHH
Confidence 4445567888999999 99999999976332 38999999997442 345677788899999999999999754321
Q ss_pred --CCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhH
Q 020630 99 --GIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSK 176 (323)
Q Consensus 99 --~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~ 176 (323)
.......--....+|+.+.++++.....++..+++++|||+||++++.++.+.+. +++.+...+..........
T Consensus 440 ~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~--f~a~~~~~~~~~~~~~~~~-- 515 (620)
T COG1506 440 EFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR--FKAAVAVAGGVDWLLYFGE-- 515 (620)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCch--hheEEeccCcchhhhhccc--
Confidence 1100000122345778888887766665778899999999999999999999884 7777766654431110000
Q ss_pred HHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEee
Q 020630 177 LHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHG 256 (323)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g 256 (323)
....+... .......+. . -...+.... ......++++|+|+|||
T Consensus 516 -------~~~~~~~~---------~~~~~~~~~------------------~-~~~~~~~~s-p~~~~~~i~~P~LliHG 559 (620)
T COG1506 516 -------STEGLRFD---------PEENGGGPP------------------E-DREKYEDRS-PIFYADNIKTPLLLIHG 559 (620)
T ss_pred -------cchhhcCC---------HHHhCCCcc------------------c-ChHHHHhcC-hhhhhcccCCCEEEEee
Confidence 00000000 000000000 0 000000000 13446788999999999
Q ss_pred CCCcccCchhHHHHHHHhc--CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHhh
Q 020630 257 TADGVTCPTSSKLLYEKAS--SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVER 317 (323)
Q Consensus 257 ~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~ 317 (323)
++|..||.+++..+.+.+. +.+++++++|+.+|.+.. .+....+.+.+.+|++++++.
T Consensus 560 ~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~---~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 560 EEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSR---PENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred cCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCC---chhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999884 566899999999999983 456778899999999998753
No 60
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.91 E-value=4e-23 Score=170.69 Aligned_cols=268 Identities=12% Similarity=0.080 Sum_probs=155.0
Q ss_pred ccccccCCccceeEEecCCCcEEEEEecCCCC-CCceEEEEecCCCCCcchhhH-----HHHHHHhcCCcEEEEeccccC
Q 020630 21 EYYTSQGVRNGKEYFETPNGKLFTQSFLPLDQ-KVKATVYMTHGYGSDTGWMFQ-----KICISYATWGYAVFAADLLGH 94 (323)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-~~~~~vv~~hG~~~~~~~~~~-----~~~~~l~~~g~~vi~~d~~G~ 94 (323)
.|.....+..+...+...++.+..+.|.|... ..+++||++||+... .+.++ .+++.|.++||+|+++|++|+
T Consensus 153 ~f~vg~~~a~Tpg~VV~~~~~~eLi~Y~P~t~~~~~~PlLiVp~~i~k-~yilDL~p~~Slv~~L~~qGf~V~~iDwrgp 231 (532)
T TIGR01838 153 AFEVGRNLATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWINK-YYILDLRPQNSLVRWLVEQGHTVFVISWRNP 231 (532)
T ss_pred ceeeCCCCCCCCCeEEEECCcEEEEEeCCCCCcCCCCcEEEECccccc-ceeeecccchHHHHHHHHCCcEEEEEECCCC
Confidence 34344555555556666666566667777643 257899999999744 33553 799999999999999999999
Q ss_pred cCCCCCCCCCCChHHHH-hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHH----HHHhhc-CCCCeeEEEEccCccCC
Q 020630 95 GRSDGIRCYLGDMEKVA-ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATM----LMYFQS-EPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 95 G~s~~~~~~~~~~~~~~-~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~----~~a~~~-p~~~v~~~il~~~~~~~ 168 (323)
|.+.... ++++++ +++.+.++.+....+ ..+++++||||||.++. .+++.+ +++ |++++++++..++
T Consensus 232 g~s~~~~----~~ddY~~~~i~~al~~v~~~~g--~~kv~lvG~cmGGtl~a~ala~~aa~~~~~r-v~slvll~t~~Df 304 (532)
T TIGR01838 232 DASQADK----TFDDYIRDGVIAALEVVEAITG--EKQVNCVGYCIGGTLLSTALAYLAARGDDKR-IKSATFFTTLLDF 304 (532)
T ss_pred CcccccC----ChhhhHHHHHHHHHHHHHHhcC--CCCeEEEEECcCcHHHHHHHHHHHHhCCCCc-cceEEEEecCcCC
Confidence 9885432 344444 345666666554332 45899999999999852 245554 666 9999999988776
Q ss_pred CCCCchhH-----HHHHHhhccc--cccccc------ccCCCcccc-c----ccccCh--h--hHHHhhcCCcccCCCCC
Q 020630 169 PENMKPSK-----LHLFMYGLLF--GLADTW------AAMPDNKMV-G----KAIKDP--E--KLKVIASNPRRYTGKPR 226 (323)
Q Consensus 169 ~~~~~~~~-----~~~~~~~~~~--~~~~~~------~~~~~~~~~-~----~~~~~~--~--~~~~~~~~~~~~~~~~~ 226 (323)
........ ....+...+. +..+.. .......++ . ..+... . .......+...+.....
T Consensus 305 ~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~ 384 (532)
T TIGR01838 305 SDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMH 384 (532)
T ss_pred CCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHH
Confidence 64322111 0101111110 000000 000000000 0 000000 0 00000001111100000
Q ss_pred chhHHHHHHhhH---------HHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCc
Q 020630 227 VGTMREIARVCQ---------YIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPD 297 (323)
Q Consensus 227 ~~~~~~~~~~~~---------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 297 (323)
...+..++.... .....+.+|++|++++.|++|.++|++.+..+.+.+ ++.+..+++++||..++++|.
T Consensus 385 ~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i--~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 385 NFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALL--GGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred HHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHC--CCCEEEEECCCCCchHhhCCC
Confidence 011111111111 012356788999999999999999999999998888 567888999999999988775
Q ss_pred h
Q 020630 298 E 298 (323)
Q Consensus 298 ~ 298 (323)
.
T Consensus 463 ~ 463 (532)
T TIGR01838 463 S 463 (532)
T ss_pred C
Confidence 3
No 61
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.91 E-value=2e-23 Score=147.57 Aligned_cols=145 Identities=30% Similarity=0.490 Sum_probs=113.4
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEE
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFG 136 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G 136 (323)
+||++||++++.. .|..+++.|+++||.|+.+|+|++|.+... +++.++++.+..... +..+++++|
T Consensus 1 ~vv~~HG~~~~~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~i~l~G 67 (145)
T PF12695_consen 1 VVVLLHGWGGSRR-DYQPLAEALAEQGYAVVAFDYPGHGDSDGA-----------DAVERVLADIRAGYP-DPDRIILIG 67 (145)
T ss_dssp EEEEECTTTTTTH-HHHHHHHHHHHTTEEEEEESCTTSTTSHHS-----------HHHHHHHHHHHHHHC-TCCEEEEEE
T ss_pred CEEEECCCCCCHH-HHHHHHHHHHHCCCEEEEEecCCCCccchh-----------HHHHHHHHHHHhhcC-CCCcEEEEE
Confidence 6899999999876 789999999999999999999999987321 134444444311111 256999999
Q ss_pred echhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhc
Q 020630 137 ESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIAS 216 (323)
Q Consensus 137 ~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
||+||.+++.++.++ .+ ++++|++++...
T Consensus 68 ~S~Gg~~a~~~~~~~-~~-v~~~v~~~~~~~------------------------------------------------- 96 (145)
T PF12695_consen 68 HSMGGAIAANLAARN-PR-VKAVVLLSPYPD------------------------------------------------- 96 (145)
T ss_dssp ETHHHHHHHHHHHHS-TT-ESEEEEESESSG-------------------------------------------------
T ss_pred EccCcHHHHHHhhhc-cc-eeEEEEecCccc-------------------------------------------------
Confidence 999999999999988 44 999999997210
Q ss_pred CCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCcc
Q 020630 217 NPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHS 290 (323)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 290 (323)
.+.+.+.+.|+++++|++|..++.+..+.+++.++ .+.++.++++++|+
T Consensus 97 ------------------------~~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 97 ------------------------SEDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP-GPKELYIIPGAGHF 145 (145)
T ss_dssp ------------------------CHHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC-SSEEEEEETTS-TT
T ss_pred ------------------------hhhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC-CCcEEEEeCCCcCc
Confidence 12234556799999999999999999999999986 46899999999995
No 62
>PRK11071 esterase YqiA; Provisional
Probab=99.91 E-value=9.2e-23 Score=148.92 Aligned_cols=183 Identities=13% Similarity=0.046 Sum_probs=119.5
Q ss_pred eEEEEecCCCCCcchhhH--HHHHHHhc--CCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCC
Q 020630 56 ATVYMTHGYGSDTGWMFQ--KICISYAT--WGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLP 131 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~--~~~~~l~~--~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~ 131 (323)
|+||++||++++.. .|. .+.+.+.+ .+|+|+++|+||++ ++.++++.++++.+..+ +
T Consensus 2 p~illlHGf~ss~~-~~~~~~~~~~l~~~~~~~~v~~~dl~g~~------------~~~~~~l~~l~~~~~~~------~ 62 (190)
T PRK11071 2 STLLYLHGFNSSPR-SAKATLLKNWLAQHHPDIEMIVPQLPPYP------------ADAAELLESLVLEHGGD------P 62 (190)
T ss_pred CeEEEECCCCCCcc-hHHHHHHHHHHHHhCCCCeEEeCCCCCCH------------HHHHHHHHHHHHHcCCC------C
Confidence 58999999998876 554 34566654 26999999999985 35667777888776543 8
Q ss_pred EEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhH
Q 020630 132 AFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKL 211 (323)
Q Consensus 132 ~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
++++||||||.+++.+|.++|. .+|+++|..... ..+........ . ......
T Consensus 63 ~~lvG~S~Gg~~a~~~a~~~~~----~~vl~~~~~~~~---------~~~~~~~~~~~-~-~~~~~~------------- 114 (190)
T PRK11071 63 LGLVGSSLGGYYATWLSQCFML----PAVVVNPAVRPF---------ELLTDYLGENE-N-PYTGQQ------------- 114 (190)
T ss_pred eEEEEECHHHHHHHHHHHHcCC----CEEEECCCCCHH---------HHHHHhcCCcc-c-ccCCCc-------------
Confidence 9999999999999999999884 257788764410 01111110000 0 000000
Q ss_pred HHhhcCCcccCCCCCchhHHHHHHhhHHH-HhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCcc
Q 020630 212 KVIASNPRRYTGKPRVGTMREIARVCQYI-QDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHS 290 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~ 290 (323)
......+....... ...+. ..+|+++++|++|.++|++.+..+++. ++.++++|++|.
T Consensus 115 ---------------~~~~~~~~~d~~~~~~~~i~-~~~~v~iihg~~De~V~~~~a~~~~~~-----~~~~~~~ggdH~ 173 (190)
T PRK11071 115 ---------------YVLESRHIYDLKVMQIDPLE-SPDLIWLLQQTGDEVLDYRQAVAYYAA-----CRQTVEEGGNHA 173 (190)
T ss_pred ---------------EEEcHHHHHHHHhcCCccCC-ChhhEEEEEeCCCCcCCHHHHHHHHHh-----cceEEECCCCcc
Confidence 00000111110000 01122 678899999999999999999998874 356788999999
Q ss_pred ccccCCchhHHHHHHHHHHHHH
Q 020630 291 LIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
+. . .+++.+.+.+|+.
T Consensus 174 f~----~--~~~~~~~i~~fl~ 189 (190)
T PRK11071 174 FV----G--FERYFNQIVDFLG 189 (190)
T ss_pred hh----h--HHHhHHHHHHHhc
Confidence 96 2 2678888988874
No 63
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.91 E-value=4.8e-22 Score=155.02 Aligned_cols=283 Identities=15% Similarity=0.127 Sum_probs=173.9
Q ss_pred cccCCccceeEEecCCC-cEEEEEecCCCC------CCceEEEEecCCCCCcc-hhhHHHHHHHhcCCcEEEEeccccCc
Q 020630 24 TSQGVRNGKEYFETPNG-KLFTQSFLPLDQ------KVKATVYMTHGYGSDTG-WMFQKICISYATWGYAVFAADLLGHG 95 (323)
Q Consensus 24 ~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~------~~~~~vv~~hG~~~~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G 95 (323)
....+.+++..++++|| .+.+....+... ...|.||++||+.+++. ..-..++..+.++||+|++++.||+|
T Consensus 87 ~~p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~ 166 (409)
T KOG1838|consen 87 SKPPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLG 166 (409)
T ss_pred CCCCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCC
Confidence 45677889999999999 888887755442 35699999999977653 24566788888899999999999999
Q ss_pred CCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCC--eeEEEEccCccCC--CCC
Q 020630 96 RSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNT--WTGLIFSAPLFVI--PEN 171 (323)
Q Consensus 96 ~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~--v~~~il~~~~~~~--~~~ 171 (323)
.+.-.....++ ..+.+|+.+++++++.+++ ..++..+|.||||.+.+.+..+..+.. +.++++++|+... ...
T Consensus 167 g~~LtTpr~f~-ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~ 243 (409)
T KOG1838|consen 167 GSKLTTPRLFT-AGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRS 243 (409)
T ss_pred CCccCCCceee-cCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhH
Confidence 99855444332 3456899999999999998 779999999999999999998743321 5666666666532 110
Q ss_pred Cc---hhHHHH-HHhhcccccc-cccc-cCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCC
Q 020630 172 MK---PSKLHL-FMYGLLFGLA-DTWA-AMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFS 245 (323)
Q Consensus 172 ~~---~~~~~~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (323)
.. ..+... .+..-+.+.. .... ............+....+++.+.......+.. ...++++... ....+.
T Consensus 244 ~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~---~~deYY~~aS-s~~~v~ 319 (409)
T KOG1838|consen 244 IETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFK---SVDEYYKKAS-SSNYVD 319 (409)
T ss_pred HhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCC---cHHHHHhhcc-hhhhcc
Confidence 00 000000 0000011010 0000 00000111111122223333322222222222 2333333322 346788
Q ss_pred cccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHH-HHHHHHHH
Q 020630 246 KVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKD-MREWIDER 314 (323)
Q Consensus 246 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~-i~~fl~~~ 314 (323)
+|++|+|+|++.+|+++|.+..- ..+...++++-+++-..+||..+++.-........+. +.+|+...
T Consensus 320 ~I~VP~L~ina~DDPv~p~~~ip-~~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 320 KIKVPLLCINAADDPVVPEEAIP-IDDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred cccccEEEEecCCCCCCCcccCC-HHHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 99999999999999999976422 2233345788888888899999987621122333444 67776654
No 64
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=152.42 Aligned_cols=118 Identities=20% Similarity=0.188 Sum_probs=95.4
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFK 119 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~ 119 (323)
.+..+..++.. ..+|.++++||+|.+.- .|..++..|..+ ..+|+++|+||||++........+.+.+++|+.+++.
T Consensus 61 t~n~Y~t~~~~-t~gpil~l~HG~G~S~L-SfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~ 138 (343)
T KOG2564|consen 61 TFNVYLTLPSA-TEGPILLLLHGGGSSAL-SFAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIK 138 (343)
T ss_pred eEEEEEecCCC-CCccEEEEeecCcccch-hHHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHH
Confidence 45555556643 66899999999998776 899999888765 5688999999999998776666699999999999999
Q ss_pred HHHhhCCCCCCCEEEEEechhHHHHHHHHhhc--CCCCeeEEEEccCc
Q 020630 120 HVRHSEPYRDLPAFLFGESMGGAATMLMYFQS--EPNTWTGLIFSAPL 165 (323)
Q Consensus 120 ~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~v~~~il~~~~ 165 (323)
++-.+. ..+++||||||||.+|...|... |. +.++++++-.
T Consensus 139 ~~fge~---~~~iilVGHSmGGaIav~~a~~k~lps--l~Gl~viDVV 181 (343)
T KOG2564|consen 139 ELFGEL---PPQIILVGHSMGGAIAVHTAASKTLPS--LAGLVVIDVV 181 (343)
T ss_pred HHhccC---CCceEEEeccccchhhhhhhhhhhchh--hhceEEEEEe
Confidence 887443 45899999999999998887653 44 7888887743
No 65
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.91 E-value=9.1e-23 Score=155.03 Aligned_cols=132 Identities=16% Similarity=0.233 Sum_probs=108.0
Q ss_pred eEEecCCCcEEEEEecCCCCCCceEEEEecCCCCCc---chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHH
Q 020630 33 EYFETPNGKLFTQSFLPLDQKVKATVYMTHGYGSDT---GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEK 109 (323)
Q Consensus 33 ~~~~~~~g~l~~~~~~~~~~~~~~~vv~~hG~~~~~---~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~ 109 (323)
.+++...|.+....+.|.+.+++++||++||++... ...|..+++.|+++||+|+++|+||||.|.+.... .+++.
T Consensus 3 ~~l~~~~g~~~~~~~~p~~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~-~~~~~ 81 (266)
T TIGR03101 3 FFLDAPHGFRFCLYHPPVAVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAA-ARWDV 81 (266)
T ss_pred EEecCCCCcEEEEEecCCCCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccc-CCHHH
Confidence 456677777777777776545678999999998642 22577788999999999999999999999765432 37888
Q ss_pred HHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCC
Q 020630 110 VAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~ 169 (323)
+++|+..+++++.... ..+++++||||||.+++.+|.++|+. ++++|+++|.....
T Consensus 82 ~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~-v~~lVL~~P~~~g~ 137 (266)
T TIGR03101 82 WKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAK-CNRLVLWQPVVSGK 137 (266)
T ss_pred HHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccc-cceEEEeccccchH
Confidence 9999999998887652 45899999999999999999999988 99999999876543
No 66
>PRK11460 putative hydrolase; Provisional
Probab=99.90 E-value=6.2e-22 Score=149.60 Aligned_cols=181 Identities=12% Similarity=0.065 Sum_probs=124.7
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC----------CCC---ChHHHHhhHHHHHH
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC----------YLG---DMEKVAASSLSFFK 119 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~----------~~~---~~~~~~~d~~~~i~ 119 (323)
.++++||++||+|++.. .|..+++.|...++.+..++.+|...+..... ... ++....+.+.++++
T Consensus 14 ~~~~~vIlLHG~G~~~~-~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~ 92 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV-AMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVR 92 (232)
T ss_pred CCCcEEEEEeCCCCChH-HHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHH
Confidence 56789999999999987 78899999987665556666666532211000 000 12333445556666
Q ss_pred HHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcc
Q 020630 120 HVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNK 199 (323)
Q Consensus 120 ~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (323)
++..+..++..+++++|||+||.+++.++..+|+. +.+++.+++.... ..
T Consensus 93 ~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~-~~~vv~~sg~~~~-----------------------~~------ 142 (232)
T PRK11460 93 YWQQQSGVGASATALIGFSQGAIMALEAVKAEPGL-AGRVIAFSGRYAS-----------------------LP------ 142 (232)
T ss_pred HHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCc-ceEEEEecccccc-----------------------cc------
Confidence 66666555567899999999999999999988886 7777766542210 00
Q ss_pred cccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhc--CC
Q 020630 200 MVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKAS--SA 277 (323)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~ 277 (323)
.....+.|+++++|++|.++|.+.++.+.+.+. +.
T Consensus 143 -------------------------------------------~~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~ 179 (232)
T PRK11460 143 -------------------------------------------ETAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGG 179 (232)
T ss_pred -------------------------------------------ccccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCC
Confidence 001125799999999999999999999888874 23
Q ss_pred CCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 278 DKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 278 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
++++++++++||.+. .+ ..+.+.+||.+.+
T Consensus 180 ~~~~~~~~~~gH~i~----~~----~~~~~~~~l~~~l 209 (232)
T PRK11460 180 DVTLDIVEDLGHAID----PR----LMQFALDRLRYTV 209 (232)
T ss_pred CeEEEEECCCCCCCC----HH----HHHHHHHHHHHHc
Confidence 568888999999997 34 4444555555444
No 67
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.90 E-value=3.1e-22 Score=150.54 Aligned_cols=204 Identities=16% Similarity=0.134 Sum_probs=136.8
Q ss_pred hhHHHHHHHhcCCcEEEEeccccCcCCCCC---CCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHH
Q 020630 71 MFQKICISYATWGYAVFAADLLGHGRSDGI---RCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLM 147 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~---~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~ 147 (323)
.|......|+++||.|+.+|+||.+..... ......-...++|+.++++++..+..++..++.++|+|+||.+++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 345567788899999999999998754311 11111234567999999999988877778899999999999999999
Q ss_pred HhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCc
Q 020630 148 YFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRV 227 (323)
Q Consensus 148 a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (323)
+.++|+. +++++..+|..+........... ........ ...
T Consensus 82 ~~~~~~~-f~a~v~~~g~~d~~~~~~~~~~~------------------------------~~~~~~~~-~~~------- 122 (213)
T PF00326_consen 82 ATQHPDR-FKAAVAGAGVSDLFSYYGTTDIY------------------------------TKAEYLEY-GDP------- 122 (213)
T ss_dssp HHHTCCG-SSEEEEESE-SSTTCSBHHTCCH------------------------------HHGHHHHH-SST-------
T ss_pred hccccee-eeeeeccceecchhccccccccc------------------------------cccccccc-Ccc-------
Confidence 9999998 99999999887654332211000 00000000 000
Q ss_pred hhHHHHHHhhHHHHhcCCc--ccccEEEEeeCCCcccCchhHHHHHHHhc--CCCCcEEEecCCCccccccCCchhHHHH
Q 020630 228 GTMREIARVCQYIQDNFSK--VTVPFLTVHGTADGVTCPTSSKLLYEKAS--SADKSIKIYDGMYHSLIQGEPDENANLV 303 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~--~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 303 (323)
......+.... ....+.+ +++|+|+++|++|..||++.+..+.+.+. +.++++++++++||.+.. .+.....
T Consensus 123 ~~~~~~~~~~s-~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~---~~~~~~~ 198 (213)
T PF00326_consen 123 WDNPEFYRELS-PISPADNVQIKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGN---PENRRDW 198 (213)
T ss_dssp TTSHHHHHHHH-HGGGGGGCGGGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTS---HHHHHHH
T ss_pred chhhhhhhhhc-cccccccccCCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCC---chhHHHH
Confidence 00001111111 1233444 78999999999999999999999998883 345899999999996652 4455688
Q ss_pred HHHHHHHHHHHHhh
Q 020630 304 LKDMREWIDERVER 317 (323)
Q Consensus 304 ~~~i~~fl~~~~~~ 317 (323)
.+.+.+||+++++.
T Consensus 199 ~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 199 YERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998764
No 68
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.90 E-value=4.9e-22 Score=149.83 Aligned_cols=201 Identities=18% Similarity=0.168 Sum_probs=139.3
Q ss_pred EEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcC-CCCCCCCC-C--------ChHHHHh
Q 020630 43 FTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGR-SDGIRCYL-G--------DMEKVAA 112 (323)
Q Consensus 43 ~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~-s~~~~~~~-~--------~~~~~~~ 112 (323)
..++..|.+.++.|.||++|++.+-.. ..+.+++.|+++||.|+++|+-+-.. ........ . ..+...+
T Consensus 2 ~ay~~~P~~~~~~~~Vvv~~d~~G~~~-~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (218)
T PF01738_consen 2 DAYVARPEGGGPRPAVVVIHDIFGLNP-NIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAA 80 (218)
T ss_dssp EEEEEEETTSSSEEEEEEE-BTTBS-H-HHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHH
T ss_pred eEEEEeCCCCCCCCEEEEEcCCCCCch-HHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHH
Confidence 456777876557899999999987665 67789999999999999999865443 11111000 0 1245668
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccccccccc
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTW 192 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
++.+.++++..+..++..++.++|+|+||.+++.++... .. ++++|...|..... .
T Consensus 81 ~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~-~~a~v~~yg~~~~~----~------------------ 136 (218)
T PF01738_consen 81 DLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PR-VDAAVSFYGGSPPP----P------------------ 136 (218)
T ss_dssp HHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TT-SSEEEEES-SSSGG----G------------------
T ss_pred HHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cc-cceEEEEcCCCCCC----c------------------
Confidence 888899999888645567999999999999999999887 44 89998877611000 0
Q ss_pred ccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHH
Q 020630 193 AAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYE 272 (323)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~ 272 (323)
......++++|+++++|++|+.++.+..+.+.+
T Consensus 137 -----------------------------------------------~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~ 169 (218)
T PF01738_consen 137 -----------------------------------------------PLEDAPKIKAPVLILFGENDPFFPPEEVEALEE 169 (218)
T ss_dssp -----------------------------------------------HHHHGGG--S-EEEEEETT-TTS-HHHHHHHHH
T ss_pred -----------------------------------------------chhhhcccCCCEeecCccCCCCCChHHHHHHHH
Confidence 123356778999999999999999998888887
Q ss_pred Hh--cCCCCcEEEecCCCccccccCCc----hhHHHHHHHHHHHHHHHH
Q 020630 273 KA--SSADKSIKIYDGMYHSLIQGEPD----ENANLVLKDMREWIDERV 315 (323)
Q Consensus 273 ~~--~~~~~~~~~~~~~gH~~~~~~~~----~~~~~~~~~i~~fl~~~~ 315 (323)
.+ .+...++++|+|++|.+...... +..++.++.+.+||++++
T Consensus 170 ~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 170 ALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred HHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 77 34568999999999999865443 467778889999998764
No 69
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.89 E-value=6.1e-22 Score=138.47 Aligned_cols=243 Identities=17% Similarity=0.215 Sum_probs=154.1
Q ss_pred ceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcc-hhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChH
Q 020630 31 GKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTG-WMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDME 108 (323)
Q Consensus 31 ~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~ 108 (323)
....++...+ ++....... ++...||++||+-++.. .....++..|.+.|+-++.+|++|.|+|.+.-.+. ...
T Consensus 11 ~~ivi~n~~ne~lvg~lh~t---gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~G-n~~ 86 (269)
T KOG4667|consen 11 QKIVIPNSRNEKLVGLLHET---GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYG-NYN 86 (269)
T ss_pred eEEEeccCCCchhhcceecc---CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccC-ccc
Confidence 4455566666 665544433 34789999999998753 24567888999999999999999999998764432 556
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccccc
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGL 188 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (323)
..++|+..+++++.... ..--+++|||-||.+++.+|.++++ ++-+|.+++-++........-....+......
T Consensus 87 ~eadDL~sV~q~~s~~n---r~v~vi~gHSkGg~Vvl~ya~K~~d--~~~viNcsGRydl~~~I~eRlg~~~l~~ike~- 160 (269)
T KOG4667|consen 87 TEADDLHSVIQYFSNSN---RVVPVILGHSKGGDVVLLYASKYHD--IRNVINCSGRYDLKNGINERLGEDYLERIKEQ- 160 (269)
T ss_pred chHHHHHHHHHHhccCc---eEEEEEEeecCccHHHHHHHHhhcC--chheEEcccccchhcchhhhhcccHHHHHHhC-
Confidence 66799999999998642 1112489999999999999999998 88888888766543322100000000000000
Q ss_pred ccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHH-HHhhHHHHhcCCcc--cccEEEEeeCCCcccCch
Q 020630 189 ADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREI-ARVCQYIQDNFSKV--TVPFLTVHGTADGVTCPT 265 (323)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~P~l~i~g~~D~~~~~~ 265 (323)
..+...+... ..........+ .+...+..+...+| +||+|-+||..|.+||.+
T Consensus 161 -Gfid~~~rkG-----------------------~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve 216 (269)
T KOG4667|consen 161 -GFIDVGPRKG-----------------------KYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVE 216 (269)
T ss_pred -CceecCcccC-----------------------CcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeech
Confidence 0000000000 00000000001 11111122233334 899999999999999999
Q ss_pred hHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 266 SSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
.+.++++.+ ++.++.+++|+.|.....+ .+.......|...+
T Consensus 217 ~AkefAk~i--~nH~L~iIEgADHnyt~~q-----~~l~~lgl~f~k~r 258 (269)
T KOG4667|consen 217 DAKEFAKII--PNHKLEIIEGADHNYTGHQ-----SQLVSLGLEFIKTR 258 (269)
T ss_pred hHHHHHHhc--cCCceEEecCCCcCccchh-----hhHhhhcceeEEee
Confidence 999999999 6789999999999998322 33445555554433
No 70
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.89 E-value=9.9e-22 Score=177.88 Aligned_cols=273 Identities=12% Similarity=0.121 Sum_probs=160.8
Q ss_pred cceeEEecCCCcEEEEEecCCCC-----CCceEEEEecCCCCCcchhhHH-----HHHHHhcCCcEEEEeccccCcCCCC
Q 020630 30 NGKEYFETPNGKLFTQSFLPLDQ-----KVKATVYMTHGYGSDTGWMFQK-----ICISYATWGYAVFAADLLGHGRSDG 99 (323)
Q Consensus 30 ~~~~~~~~~~g~l~~~~~~~~~~-----~~~~~vv~~hG~~~~~~~~~~~-----~~~~l~~~g~~vi~~d~~G~G~s~~ 99 (323)
.+...+...++.+..+.|.|... ..+++|||+||++.+.. .|+. +.+.|.++||+|+++|+ |.++.
T Consensus 37 ~tp~~vv~~~~~~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~-~~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~ 112 (994)
T PRK07868 37 PSPFQIVESVPMYRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSAD-MWDVTRDDGAVGILHRAGLDPWVIDF---GSPDK 112 (994)
T ss_pred CCCCcEEEEcCcEEEEEeCCCCccccccCCCCcEEEECCCCCCcc-ceecCCcccHHHHHHHCCCEEEEEcC---CCCCh
Confidence 34444555566555666666541 35689999999987765 7765 37889899999999994 66554
Q ss_pred CCC-CCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcC-CCCeeEEEEccCccCCCCCCchhHH
Q 020630 100 IRC-YLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSE-PNTWTGLIFSAPLFVIPENMKPSKL 177 (323)
Q Consensus 100 ~~~-~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~v~~~il~~~~~~~~~~~~~~~~ 177 (323)
+.. ...++.+.+..+.+.++.+.... ..+++++||||||.+++.+++.++ ++ |+++|++++..++.........
T Consensus 113 ~~~~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~-v~~lvl~~~~~d~~~~~~~~~~ 188 (994)
T PRK07868 113 VEGGMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKD-IASIVTFGSPVDTLAALPMGIP 188 (994)
T ss_pred hHcCccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCc-cceEEEEecccccCCCCcccch
Confidence 322 12366666666666666554332 348999999999999999987654 46 9999998887654322111000
Q ss_pred H---HHHhhccc-----c-ccccccc-------CCCc------ccccccccCh-------hhHHHhhcCCcccCCCCCch
Q 020630 178 H---LFMYGLLF-----G-LADTWAA-------MPDN------KMVGKAIKDP-------EKLKVIASNPRRYTGKPRVG 228 (323)
Q Consensus 178 ~---~~~~~~~~-----~-~~~~~~~-------~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 228 (323)
. .....++. . ..+.+.. .+.. .+.. .+.+. ....+...... .. ....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~-~l~~~~~~~~~e~~~~~~~~~~w--~~-~~g~ 264 (994)
T PRK07868 189 AGLAAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLR-QLHDREALLPREQQRRFLESEGW--IA-WSGP 264 (994)
T ss_pred hhhhhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHH-hcCchhhhccchhhHhHHHHhhc--cc-cchH
Confidence 0 00000000 0 0000000 0000 0000 00000 00011100000 00 0000
Q ss_pred hHHHHHHhhH----HHH---------hcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcE-EEecCCCcccccc
Q 020630 229 TMREIARVCQ----YIQ---------DNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSI-KIYDGMYHSLIQG 294 (323)
Q Consensus 229 ~~~~~~~~~~----~~~---------~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gH~~~~~ 294 (323)
...++.+... ... ..++++++|+|+|+|++|.++|++.++.+.+.+ ++.++ .+++++||+.++.
T Consensus 265 ~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i--~~a~~~~~~~~~GH~g~~~ 342 (994)
T PRK07868 265 AISELLKQFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAA--PNAEVYESLIRAGHFGLVV 342 (994)
T ss_pred HHHHHHHHHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhC--CCCeEEEEeCCCCCEeeee
Confidence 1111222111 000 147889999999999999999999999999888 67776 6779999998865
Q ss_pred CCchhHHHHHHHHHHHHHHHHhh
Q 020630 295 EPDENANLVLKDMREWIDERVER 317 (323)
Q Consensus 295 ~~~~~~~~~~~~i~~fl~~~~~~ 317 (323)
.. ...+.++..|.+||.++...
T Consensus 343 g~-~a~~~~wp~i~~wl~~~~~~ 364 (994)
T PRK07868 343 GS-RAAQQTWPTVADWVKWLEGD 364 (994)
T ss_pred ch-hhhhhhChHHHHHHHHhccC
Confidence 44 45788999999999998743
No 71
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1.6e-20 Score=141.03 Aligned_cols=213 Identities=17% Similarity=0.155 Sum_probs=165.3
Q ss_pred ceeEEecCCCcEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccC-cCCCCCCC------C
Q 020630 31 GKEYFETPNGKLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGH-GRSDGIRC------Y 103 (323)
Q Consensus 31 ~~~~~~~~~g~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~-G~s~~~~~------~ 103 (323)
+...+..+++.+..+...|.+..+.|.||++|++.+-.. ..+.+++.|++.||.|+++|+-+. |.+..... .
T Consensus 3 ~~v~~~~~~~~~~~~~a~P~~~~~~P~VIv~hei~Gl~~-~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~ 81 (236)
T COG0412 3 TDVTIPAPDGELPAYLARPAGAGGFPGVIVLHEIFGLNP-HIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELET 81 (236)
T ss_pred cceEeeCCCceEeEEEecCCcCCCCCEEEEEecccCCch-HHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhh
Confidence 345666777789999999987555699999999988777 889999999999999999998874 33321110 0
Q ss_pred ----CCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHH
Q 020630 104 ----LGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHL 179 (323)
Q Consensus 104 ----~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~ 179 (323)
..+..+...|+.+.++++..+..++..+|.++|+||||.+++.++...|+ +++.+..-+......
T Consensus 82 ~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~--v~a~v~fyg~~~~~~--------- 150 (236)
T COG0412 82 GLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPE--VKAAVAFYGGLIADD--------- 150 (236)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCC--ccEEEEecCCCCCCc---------
Confidence 11236778999999999998765567789999999999999999999884 899888766543110
Q ss_pred HHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCC
Q 020630 180 FMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTAD 259 (323)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D 259 (323)
.....++++|+|+..|+.|
T Consensus 151 -------------------------------------------------------------~~~~~~~~~pvl~~~~~~D 169 (236)
T COG0412 151 -------------------------------------------------------------TADAPKIKVPVLLHLAGED 169 (236)
T ss_pred -------------------------------------------------------------ccccccccCcEEEEecccC
Confidence 1113577999999999999
Q ss_pred cccCchhHHHHHHHhcCC--CCcEEEecCCCccccccC-------CchhHHHHHHHHHHHHHHHHh
Q 020630 260 GVTCPTSSKLLYEKASSA--DKSIKIYDGMYHSLIQGE-------PDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~~~~~~-------~~~~~~~~~~~i~~fl~~~~~ 316 (323)
..+|......+.+.+... .+++.+++++.|.++-.. .....+..++.+.+||++.+.
T Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 170 PYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred CCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999888888877433 678999999989998432 335677788999999988753
No 72
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.88 E-value=1.3e-23 Score=160.67 Aligned_cols=202 Identities=20% Similarity=0.188 Sum_probs=123.3
Q ss_pred cEEEEeccccCcCCCC---CCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEE
Q 020630 84 YAVFAADLLGHGRSDG---IRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLI 160 (323)
Q Consensus 84 ~~vi~~d~~G~G~s~~---~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~i 160 (323)
|+|+++|+||+|.|+. .....++.+++++++..+++.++.+ +++++||||||.+++.+|..+|++ |+++|
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~vG~S~Gg~~~~~~a~~~p~~-v~~lv 73 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIK------KINLVGHSMGGMLALEYAAQYPER-VKKLV 73 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTS------SEEEEEETHHHHHHHHHHHHSGGG-EEEEE
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCC------CeEEEEECCChHHHHHHHHHCchh-hcCcE
Confidence 7899999999999995 4445568999999999999998865 799999999999999999999998 99999
Q ss_pred EccCcc----CCCCCCchh-HHHHHHhhcccc-cccccccCCCcc-----ccccc-ccChhhHHHhhcCCcccCCCCCch
Q 020630 161 FSAPLF----VIPENMKPS-KLHLFMYGLLFG-LADTWAAMPDNK-----MVGKA-IKDPEKLKVIASNPRRYTGKPRVG 228 (323)
Q Consensus 161 l~~~~~----~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 228 (323)
+++++. ......... ............ ............ ..... ......... . ..........
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~ 149 (230)
T PF00561_consen 74 LISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQ-S---QQYARFAETD 149 (230)
T ss_dssp EESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-H---HHHHHTCHHH
T ss_pred EEeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccc-h---hhhhHHHHHH
Confidence 999862 100000000 000000000000 000000000000 00000 000000000 0 0000000000
Q ss_pred hHH------HHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCch
Q 020630 229 TMR------EIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDE 298 (323)
Q Consensus 229 ~~~------~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 298 (323)
... ............+..+++|+++++|++|.++|++....+.+.+ ++.++++++++||..+++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~--~~~~~~~~~~~GH~~~~~~~~~ 223 (230)
T PF00561_consen 150 AFDNMFWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLI--PNSQLVLIEGSGHFAFLEGPDE 223 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHS--TTEEEEEETTCCSTHHHHSHHH
T ss_pred HHhhhccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhc--CCCEEEECCCCChHHHhcCHHh
Confidence 000 1111122234567789999999999999999999999988888 7899999999999999766644
No 73
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.88 E-value=4.3e-20 Score=143.81 Aligned_cols=219 Identities=15% Similarity=0.129 Sum_probs=132.7
Q ss_pred cEEEEEecCCC--CCCceEEEEecCCCCCcchhhH--HHHHHH-hcCCcEEEEecc--ccCcCCCCCC------------
Q 020630 41 KLFTQSFLPLD--QKVKATVYMTHGYGSDTGWMFQ--KICISY-ATWGYAVFAADL--LGHGRSDGIR------------ 101 (323)
Q Consensus 41 ~l~~~~~~~~~--~~~~~~vv~~hG~~~~~~~~~~--~~~~~l-~~~g~~vi~~d~--~G~G~s~~~~------------ 101 (323)
.+.|.+|.|++ .++.|+|+++||++++.. .|. .....+ .+.|+.|+++|. +|+|.+....
T Consensus 26 ~~~~~v~~P~~~~~~~~P~vvllHG~~~~~~-~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~ 104 (275)
T TIGR02821 26 PMTFGVFLPPQAAAGPVPVLWYLSGLTCTHE-NFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYV 104 (275)
T ss_pred ceEEEEEcCCCccCCCCCEEEEccCCCCCcc-HHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccc
Confidence 88899999864 345799999999998765 443 223344 456999999998 5555332100
Q ss_pred -------CCCCChH-HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCc
Q 020630 102 -------CYLGDME-KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMK 173 (323)
Q Consensus 102 -------~~~~~~~-~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~ 173 (323)
...+... .+++++..+++.. .+++..+++++||||||.+|+.++.++|+. +++++++++........
T Consensus 105 d~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~-~~~~~~~~~~~~~~~~~- 179 (275)
T TIGR02821 105 DATEEPWSQHYRMYSYIVQELPALVAAQ---FPLDGERQGITGHSMGGHGALVIALKNPDR-FKSVSAFAPIVAPSRCP- 179 (275)
T ss_pred cCCcCcccccchHHHHHHHHHHHHHHhh---CCCCCCceEEEEEChhHHHHHHHHHhCccc-ceEEEEECCccCcccCc-
Confidence 0001122 2245555555442 223356899999999999999999999999 99999999876532110
Q ss_pred hhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEE
Q 020630 174 PSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLT 253 (323)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 253 (323)
+.... ....+..+...... .+.. ...... ....|+++
T Consensus 180 --~~~~~-----------------------------~~~~l~~~~~~~~~-------~~~~----~~~~~~-~~~~plli 216 (275)
T TIGR02821 180 --WGQKA-----------------------------FSAYLGADEAAWRS-------YDAS----LLVADG-GRHSTILI 216 (275)
T ss_pred --chHHH-----------------------------HHHHhcccccchhh-------cchH----HHHhhc-ccCCCeeE
Confidence 00000 00000000000000 0000 011111 23679999
Q ss_pred EeeCCCcccCc-hhHHHHHHHhc--CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 254 VHGTADGVTCP-TSSKLLYEKAS--SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 254 i~g~~D~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
.+|+.|..++. .....+.+.+. +..+++.+++|++|.+.. .........+|..++
T Consensus 217 ~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~~------~~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 217 DQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYYF------IASFIADHLRHHAER 274 (275)
T ss_pred eecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccchh------HHHhHHHHHHHHHhh
Confidence 99999999998 45556666653 345788999999999983 344666666676654
No 74
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.87 E-value=1.6e-21 Score=153.37 Aligned_cols=246 Identities=15% Similarity=0.146 Sum_probs=145.1
Q ss_pred cCCccceeEEecCCCcEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCC
Q 020630 26 QGVRNGKEYFETPNGKLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLG 105 (323)
Q Consensus 26 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~ 105 (323)
.+.+.++..++..+++|..+...|.++++.|+||++.|+.+.....+..+.+.|+.+|+.++++|.||.|.|...+.. .
T Consensus 161 ~~~~i~~v~iP~eg~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~-~ 239 (411)
T PF06500_consen 161 SDYPIEEVEIPFEGKTIPGYLHLPSGEKPYPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLT-Q 239 (411)
T ss_dssp SSSEEEEEEEEETTCEEEEEEEESSSSS-EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S--S
T ss_pred CCCCcEEEEEeeCCcEEEEEEEcCCCCCCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCCC-c
Confidence 455567778887767888888888877778999999998877664566667788899999999999999999654322 2
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcc
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLL 185 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 185 (323)
+.+.+ ..++++++.....+|..+|.++|.|+||++|.++|..++++ ++++|..++....-- .............
T Consensus 240 D~~~l---~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~R-lkavV~~Ga~vh~~f--t~~~~~~~~P~my 313 (411)
T PF06500_consen 240 DSSRL---HQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPR-LKAVVALGAPVHHFF--TDPEWQQRVPDMY 313 (411)
T ss_dssp -CCHH---HHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT--SEEEEES---SCGG--H-HHHHTTS-HHH
T ss_pred CHHHH---HHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccc-eeeEeeeCchHhhhh--ccHHHHhcCCHHH
Confidence 33333 34667777776667788999999999999999999988888 999999998753110 0000000000000
Q ss_pred c-ccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcC--CcccccEEEEeeCCCccc
Q 020630 186 F-GLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNF--SKVTVPFLTVHGTADGVT 262 (323)
Q Consensus 186 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~i~g~~D~~~ 262 (323)
. .+..... ................... ....+ .+..+|+|.+.|++|.++
T Consensus 314 ~d~LA~rlG--------~~~~~~~~l~~el~~~SLk-------------------~qGlL~~rr~~~plL~i~~~~D~v~ 366 (411)
T PF06500_consen 314 LDVLASRLG--------MAAVSDESLRGELNKFSLK-------------------TQGLLSGRRCPTPLLAINGEDDPVS 366 (411)
T ss_dssp HHHHHHHCT---------SCE-HHHHHHHGGGGSTT-------------------TTTTTTSS-BSS-EEEEEETT-SSS
T ss_pred HHHHHHHhC--------CccCCHHHHHHHHHhcCcc-------------------hhccccCCCCCcceEEeecCCCCCC
Confidence 0 0000000 0000000000000000000 01233 667899999999999999
Q ss_pred CchhHHHHHHHhcCCCCcEEEecCCC-ccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 263 CPTSSKLLYEKASSADKSIKIYDGMY-HSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g-H~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
|.+..+.++..- .+.+...++... |..+ +.....+.+||++.+
T Consensus 367 P~eD~~lia~~s--~~gk~~~~~~~~~~~gy--------~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 367 PIEDSRLIAESS--TDGKALRIPSKPLHMGY--------PQALDEIYKWLEDKL 410 (411)
T ss_dssp -HHHHHHHHHTB--TT-EEEEE-SSSHHHHH--------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC--CCCceeecCCCccccch--------HHHHHHHHHHHHHhc
Confidence 999988877765 445677777544 5554 567888999998764
No 75
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.87 E-value=9.7e-21 Score=148.17 Aligned_cols=247 Identities=18% Similarity=0.197 Sum_probs=150.1
Q ss_pred cCCccceeEEecCCC-cEEEEEecCC-CCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCC---
Q 020630 26 QGVRNGKEYFETPNG-KLFTQSFLPL-DQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGI--- 100 (323)
Q Consensus 26 ~~~~~~~~~~~~~~g-~l~~~~~~~~-~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~--- 100 (323)
..+...+..+.+.+| .|+.+.+.|. ..++.|+||.+||.++... .+.... .++.+||.|+.+|.||.|.....
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~-~~~~~~-~~a~~G~~vl~~d~rGqg~~~~d~~~ 129 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSG-DPFDLL-PWAAAGYAVLAMDVRGQGGRSPDYRG 129 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GG-GHHHHH-HHHHTT-EEEEE--TTTSSSS-B-SS
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCC-Cccccc-ccccCCeEEEEecCCCCCCCCCCccc
Confidence 344455778888899 9999999998 4467799999999998865 444443 36778999999999999932210
Q ss_pred ------CC----------CCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccC
Q 020630 101 ------RC----------YLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 101 ------~~----------~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~ 164 (323)
.. ..+-+..+..|....++.+.....+|..++.+.|.|+||.+++.+|+..+. |++++...|
T Consensus 130 ~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~r--v~~~~~~vP 207 (320)
T PF05448_consen 130 SSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPR--VKAAAADVP 207 (320)
T ss_dssp BSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST---SEEEEESE
T ss_pred cCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCcc--ccEEEecCC
Confidence 00 011234566889999999998887888999999999999999999999765 999999887
Q ss_pred ccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhh-cCCcccCCCCCchhHHHHHHhhHHHHhc
Q 020630 165 LFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIA-SNPRRYTGKPRVGTMREIARVCQYIQDN 243 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (323)
+..-... ....... . ..-.....++. .+... .......+.+... +....
T Consensus 208 ~l~d~~~---------~~~~~~~------~----------~~y~~~~~~~~~~d~~~----~~~~~v~~~L~Y~-D~~nf 257 (320)
T PF05448_consen 208 FLCDFRR---------ALELRAD------E----------GPYPEIRRYFRWRDPHH----EREPEVFETLSYF-DAVNF 257 (320)
T ss_dssp SSSSHHH---------HHHHT--------S----------TTTHHHHHHHHHHSCTH----CHHHHHHHHHHTT--HHHH
T ss_pred Cccchhh---------hhhcCCc------c----------ccHHHHHHHHhccCCCc----ccHHHHHHHHhhh-hHHHH
Confidence 6541100 0000000 0 00000001110 00000 0000011111111 13455
Q ss_pred CCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 244 FSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 244 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
.++|+||+++-.|-.|.++|+......++.++++ +++.+++..||... . +...+...+||.++
T Consensus 258 A~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~-K~l~vyp~~~He~~----~---~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 258 ARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPGP-KELVVYPEYGHEYG----P---EFQEDKQLNFLKEH 320 (320)
T ss_dssp GGG--SEEEEEEETT-SSS-HHHHHHHHCC--SS-EEEEEETT--SSTT----H---HHHHHHHHHHHHH-
T ss_pred HHHcCCCEEEEEecCCCCCCchhHHHHHhccCCC-eeEEeccCcCCCch----h---hHHHHHHHHHHhcC
Confidence 6889999999999999999999999999999754 89999999999887 2 22267788888764
No 76
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.86 E-value=3.7e-20 Score=127.59 Aligned_cols=197 Identities=16% Similarity=0.173 Sum_probs=144.5
Q ss_pred cceeEEecCCCcEEEEEecCCCCCCceEEEEecCCC---CCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCC
Q 020630 30 NGKEYFETPNGKLFTQSFLPLDQKVKATVYMTHGYG---SDT-GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLG 105 (323)
Q Consensus 30 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~vv~~hG~~---~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~ 105 (323)
..+..+..+-|++-... .|.+.+..|..|++|.-+ ++. .-....++..|.++||.++.+|+||.|.|.+.-+.
T Consensus 4 ~~~v~i~Gp~G~le~~~-~~~~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~-- 80 (210)
T COG2945 4 MPTVIINGPAGRLEGRY-EPAKTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDN-- 80 (210)
T ss_pred CCcEEecCCcccceecc-CCCCCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccC--
Confidence 34566667777554433 333346688999999753 221 12556788899999999999999999999876543
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCE-EEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhc
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPA-FLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGL 184 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~-~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~ 184 (323)
-. .-.+|..++++|++.+.+ ..+. .+.|+|+|+++++.+|.+.|+ +...+.+.|.....
T Consensus 81 Gi-GE~~Da~aaldW~~~~hp--~s~~~~l~GfSFGa~Ia~~la~r~~e--~~~~is~~p~~~~~--------------- 140 (210)
T COG2945 81 GI-GELEDAAAALDWLQARHP--DSASCWLAGFSFGAYIAMQLAMRRPE--ILVFISILPPINAY--------------- 140 (210)
T ss_pred Cc-chHHHHHHHHHHHHhhCC--CchhhhhcccchHHHHHHHHHHhccc--ccceeeccCCCCch---------------
Confidence 12 235789999999999876 3344 689999999999999999888 56666666554310
Q ss_pred ccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCc
Q 020630 185 LFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCP 264 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~ 264 (323)
-...+....+|.++|+|+.|.+++.
T Consensus 141 -------------------------------------------------------dfs~l~P~P~~~lvi~g~~Ddvv~l 165 (210)
T COG2945 141 -------------------------------------------------------DFSFLAPCPSPGLVIQGDADDVVDL 165 (210)
T ss_pred -------------------------------------------------------hhhhccCCCCCceeEecChhhhhcH
Confidence 0122344578999999999999998
Q ss_pred hhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 265 TSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
....++.+.. ..+++.+++++|+++ . ....+.+.+.+|+.
T Consensus 166 ~~~l~~~~~~---~~~~i~i~~a~HFF~----g-Kl~~l~~~i~~~l~ 205 (210)
T COG2945 166 VAVLKWQESI---KITVITIPGADHFFH----G-KLIELRDTIADFLE 205 (210)
T ss_pred HHHHHhhcCC---CCceEEecCCCceec----c-cHHHHHHHHHHHhh
Confidence 8888777663 478999999999999 2 34567888888884
No 77
>PLN00021 chlorophyllase
Probab=99.86 E-value=7.9e-20 Score=142.99 Aligned_cols=207 Identities=13% Similarity=0.153 Sum_probs=137.9
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~ 120 (323)
.+.+.++.|...+..|+|||+||++.+.. .|..+++.|+++||.|+++|++|++.+.. ...++ +..+++++
T Consensus 38 ~~p~~v~~P~~~g~~PvVv~lHG~~~~~~-~y~~l~~~Las~G~~VvapD~~g~~~~~~----~~~i~----d~~~~~~~ 108 (313)
T PLN00021 38 PKPLLVATPSEAGTYPVLLFLHGYLLYNS-FYSQLLQHIASHGFIVVAPQLYTLAGPDG----TDEIK----DAAAVINW 108 (313)
T ss_pred CceEEEEeCCCCCCCCEEEEECCCCCCcc-cHHHHHHHHHhCCCEEEEecCCCcCCCCc----hhhHH----HHHHHHHH
Confidence 67788888876567799999999998877 78899999999999999999998653321 11222 22333333
Q ss_pred HHhh--------CCCCCCCEEEEEechhHHHHHHHHhhcCCC----CeeEEEEccCccCCCCCCchhHHHHHHhhccccc
Q 020630 121 VRHS--------EPYRDLPAFLFGESMGGAATMLMYFQSEPN----TWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGL 188 (323)
Q Consensus 121 l~~~--------~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~----~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (323)
+... ...+..+++++||||||.+++.+|..+++. +++++|+++|..........
T Consensus 109 l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~~~-------------- 174 (313)
T PLN00021 109 LSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGKQT-------------- 174 (313)
T ss_pred HHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccccCC--------------
Confidence 3221 112346899999999999999999987742 28999999887543211000
Q ss_pred ccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCc-----c--
Q 020630 189 ADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADG-----V-- 261 (323)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~-----~-- 261 (323)
....+. ......++.+|+|++.+..|. .
T Consensus 175 --------~p~il~-------------------------------------~~~~s~~~~~P~liig~g~~~~~~~~~~p 209 (313)
T PLN00021 175 --------PPPVLT-------------------------------------YAPHSFNLDIPVLVIGTGLGGEPRNPLFP 209 (313)
T ss_pred --------CCcccc-------------------------------------cCcccccCCCCeEEEecCCCccccccccc
Confidence 000000 011223367999999998663 2
Q ss_pred --cCchh-HHHHHHHhcCCCCcEEEecCCCccccccCC-------------------chhHHHHHHHHHHHHHHHHh
Q 020630 262 --TCPTS-SKLLYEKASSADKSIKIYDGMYHSLIQGEP-------------------DENANLVLKDMREWIDERVE 316 (323)
Q Consensus 262 --~~~~~-~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~-------------------~~~~~~~~~~i~~fl~~~~~ 316 (323)
.|... ...+++.++ +.+.+.+++++||+-++++. +...+.+...+..||...+.
T Consensus 210 ~~ap~~~~~~~f~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~ 285 (313)
T PLN00021 210 PCAPDGVNHAEFFNECK-APAVHFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLE 285 (313)
T ss_pred ccCCCCCCHHHHHHhcC-CCeeeeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 22433 367777775 35788899999999997665 13445566677888887663
No 78
>PLN02442 S-formylglutathione hydrolase
Probab=99.86 E-value=4.5e-19 Score=138.28 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=126.9
Q ss_pred CCC-cEEEEEecCCC--CCCceEEEEecCCCCCcchhhH---HHHHHHhcCCcEEEEeccccCcC-----CCC------C
Q 020630 38 PNG-KLFTQSFLPLD--QKVKATVYMTHGYGSDTGWMFQ---KICISYATWGYAVFAADLLGHGR-----SDG------I 100 (323)
Q Consensus 38 ~~g-~l~~~~~~~~~--~~~~~~vv~~hG~~~~~~~~~~---~~~~~l~~~g~~vi~~d~~G~G~-----s~~------~ 100 (323)
.-| .+.|.+|.|+. +++.|+|+++||++++.. .|. .+.+.+...|+.|+.+|..++|. +.. .
T Consensus 27 ~l~~~~~~~vy~P~~~~~~~~Pvv~~lHG~~~~~~-~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~ 105 (283)
T PLN02442 27 TLGCSMTFSVYFPPASDSGKVPVLYWLSGLTCTDE-NFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGA 105 (283)
T ss_pred ccCCceEEEEEcCCcccCCCCCEEEEecCCCcChH-HHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCc
Confidence 445 89999998873 245799999999987754 342 34466677799999999887661 110 0
Q ss_pred C-------CC--CCC-hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCC
Q 020630 101 R-------CY--LGD-MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPE 170 (323)
Q Consensus 101 ~-------~~--~~~-~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~ 170 (323)
. .. ... .+.+.+++...++..... .+..+++++||||||..|+.++.++|+. +++++++++......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~~~~~~~i~G~S~GG~~a~~~a~~~p~~-~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 106 GFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQ--LDTSRASIFGHSMGGHGALTIYLKNPDK-YKSVSAFAPIANPIN 182 (283)
T ss_pred ceeeccccCCCcccchhhhHHHHHHHHHHHHHHh--cCCCceEEEEEChhHHHHHHHHHhCchh-EEEEEEECCccCccc
Confidence 0 00 001 122334555555443221 1255899999999999999999999998 999999998765321
Q ss_pred CCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCccccc
Q 020630 171 NMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVP 250 (323)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 250 (323)
.. +....+...+ .... ......++ ......+...++|
T Consensus 183 ~~---~~~~~~~~~~--------------------g~~~-~~~~~~d~-------------------~~~~~~~~~~~~p 219 (283)
T PLN02442 183 CP---WGQKAFTNYL--------------------GSDK-ADWEEYDA-------------------TELVSKFNDVSAT 219 (283)
T ss_pred Cc---hhhHHHHHHc--------------------CCCh-hhHHHcCh-------------------hhhhhhccccCCC
Confidence 11 1000000000 0000 00000000 0012234456899
Q ss_pred EEEEeeCCCcccCch-hHHHHHHHhc--CCCCcEEEecCCCcccc
Q 020630 251 FLTVHGTADGVTCPT-SSKLLYEKAS--SADKSIKIYDGMYHSLI 292 (323)
Q Consensus 251 ~l~i~g~~D~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~gH~~~ 292 (323)
+++++|++|.+++.. .++.+.+.+. +.++++.++++.+|...
T Consensus 220 vli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 220 ILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred EEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHH
Confidence 999999999998863 3455555442 34578999999999876
No 79
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.85 E-value=5.5e-20 Score=137.81 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=87.7
Q ss_pred EEecCCC-CCCceEEEEecCCCCCcchhhH---HHHHHHhcCCcEEEEeccccCcCCCCCCCCC-----CChHHHHhhHH
Q 020630 45 QSFLPLD-QKVKATVYMTHGYGSDTGWMFQ---KICISYATWGYAVFAADLLGHGRSDGIRCYL-----GDMEKVAASSL 115 (323)
Q Consensus 45 ~~~~~~~-~~~~~~vv~~hG~~~~~~~~~~---~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~-----~~~~~~~~d~~ 115 (323)
++|.|.+ .++.|+||++||.+++.. .+. .+...+.+.||.|+++|++|++.+....... ........++.
T Consensus 2 ~ly~P~~~~~~~P~vv~lHG~~~~~~-~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T TIGR01840 2 YVYVPAGLTGPRALVLALHGCGQTAS-AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLH 80 (212)
T ss_pred EEEcCCCCCCCCCEEEEeCCCCCCHH-HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHH
Confidence 4566654 356799999999997754 332 2444555679999999999987543211100 01123456778
Q ss_pred HHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 116 SFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 116 ~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
.+++.+..+..++..+++|+|||+||.+++.++..+|+. +.+++.+++..
T Consensus 81 ~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~-~~~~~~~~g~~ 130 (212)
T TIGR01840 81 QLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDV-FAGGASNAGLP 130 (212)
T ss_pred HHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchh-heEEEeecCCc
Confidence 888888877777778999999999999999999999998 99988887654
No 80
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.84 E-value=4.3e-19 Score=139.06 Aligned_cols=247 Identities=19% Similarity=0.227 Sum_probs=136.7
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcC--CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATW--GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFF 118 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~--g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i 118 (323)
.+.|...+.. .|+|+++||++++.. .|......+... .|+++.+|+||||.|. .. .......++++..++
T Consensus 11 ~~~~~~~~~~----~~~i~~~hg~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~~--~~~~~~~~~~~~~~~ 82 (282)
T COG0596 11 RLAYREAGGG----GPPLVLLHGFPGSSS-VWRPVFKVLPALAARYRVIAPDLRGHGRSD-PA--GYSLSAYADDLAALL 82 (282)
T ss_pred EEEEeecCCC----CCeEEEeCCCCCchh-hhHHHHHHhhccccceEEEEecccCCCCCC-cc--cccHHHHHHHHHHHH
Confidence 4555544433 459999999998866 555532233321 1899999999999997 11 224555588899999
Q ss_pred HHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchh------H---HHHHHhhcc--cc
Q 020630 119 KHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPS------K---LHLFMYGLL--FG 187 (323)
Q Consensus 119 ~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~------~---~~~~~~~~~--~~ 187 (323)
+.+... +++++|||+||.+++.++.++|+. ++++|++++........... . ......... ..
T Consensus 83 ~~~~~~------~~~l~G~S~Gg~~~~~~~~~~p~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (282)
T COG0596 83 DALGLE------KVVLVGHSMGGAVALALALRHPDR-VRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADLLLGLDAAA 155 (282)
T ss_pred HHhCCC------ceEEEEecccHHHHHHHHHhcchh-hheeeEecCCCCcccccCccccCccccchhhhhhhhhccchhh
Confidence 877754 699999999999999999999998 99999999765411000000 0 000000000 00
Q ss_pred cccccccCC-Ccccc-------cccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCC
Q 020630 188 LADTWAAMP-DNKMV-------GKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTAD 259 (323)
Q Consensus 188 ~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D 259 (323)
......... ..... ........ .......................... ........+++|+++++|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~P~l~i~g~~d 232 (282)
T COG0596 156 FAALLAALGLLAALAAAARAGLAEALRAPL-LGAAAAAFARAARADLAAALLALLDR--DLRAALARITVPTLIIHGEDD 232 (282)
T ss_pred hhhhhhcccccccccccchhcccccccccc-chhHhhhhhhhcccccchhhhccccc--ccchhhccCCCCeEEEecCCC
Confidence 000000000 00000 00000000 00000000000000000000000000 123445677899999999999
Q ss_pred cccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHH
Q 020630 260 GVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREW 310 (323)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~f 310 (323)
.+.|......+.+.+.. ..++.+++++||..++++|. .+.+.+.+|
T Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~p~----~~~~~i~~~ 278 (282)
T COG0596 233 PVVPAELARRLAAALPN-DARLVVIPGAGHFPHLEAPE----AFAAALLAF 278 (282)
T ss_pred CcCCHHHHHHHHhhCCC-CceEEEeCCCCCcchhhcHH----HHHHHHHHH
Confidence 66666555666666622 48999999999999977774 455555553
No 81
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.84 E-value=4.5e-19 Score=133.16 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=113.7
Q ss_pred CCceEEEEecCCCCCcchhhHHHHH-HHhcCCcEEEEecccc------CcC---CCCC-----CCC---CCChHHHHhhH
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICI-SYATWGYAVFAADLLG------HGR---SDGI-----RCY---LGDMEKVAASS 114 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~-~l~~~g~~vi~~d~~G------~G~---s~~~-----~~~---~~~~~~~~~d~ 114 (323)
+..++||++||+|.+.. .+..+.. .+......++.+.-|. .|. +.-. ... ...+...++.+
T Consensus 12 ~~~~lvi~LHG~G~~~~-~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l 90 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSED-LFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERL 90 (216)
T ss_dssp T-SEEEEEE--TTS-HH-HHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCcc-hhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHH
Confidence 66899999999998875 5555544 2333457777775442 222 1111 000 11234445566
Q ss_pred HHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccccccccccc
Q 020630 115 LSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAA 194 (323)
Q Consensus 115 ~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (323)
.++|+..... .++..+++++|+|+||.+|+.++.++|.. +.++|.+++..........
T Consensus 91 ~~li~~~~~~-~i~~~ri~l~GFSQGa~~al~~~l~~p~~-~~gvv~lsG~~~~~~~~~~-------------------- 148 (216)
T PF02230_consen 91 DELIDEEVAY-GIDPSRIFLGGFSQGAAMALYLALRYPEP-LAGVVALSGYLPPESELED-------------------- 148 (216)
T ss_dssp HHHHHHHHHT-T--GGGEEEEEETHHHHHHHHHHHCTSST-SSEEEEES---TTGCCCHC--------------------
T ss_pred HHHHHHHHHc-CCChhheehhhhhhHHHHHHHHHHHcCcC-cCEEEEeeccccccccccc--------------------
Confidence 6777765433 35677999999999999999999999998 9999999976542211000
Q ss_pred CCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHh
Q 020630 195 MPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKA 274 (323)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 274 (323)
...... ++|++++||..|.++|.+.++...+.+
T Consensus 149 ---------------------------------------------~~~~~~--~~pi~~~hG~~D~vvp~~~~~~~~~~L 181 (216)
T PF02230_consen 149 ---------------------------------------------RPEALA--KTPILIIHGDEDPVVPFEWAEKTAEFL 181 (216)
T ss_dssp ---------------------------------------------CHCCCC--TS-EEEEEETT-SSSTHHHHHHHHHHH
T ss_pred ---------------------------------------------cccccC--CCcEEEEecCCCCcccHHHHHHHHHHH
Confidence 001111 689999999999999999988888887
Q ss_pred c--CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 275 S--SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 275 ~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
. +.++++..+++.||... .+..+.+.+||++++
T Consensus 182 ~~~~~~v~~~~~~g~gH~i~--------~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 182 KAAGANVEFHEYPGGGHEIS--------PEELRDLREFLEKHI 216 (216)
T ss_dssp HCTT-GEEEEEETT-SSS----------HHHHHHHHHHHHHH-
T ss_pred HhcCCCEEEEEcCCCCCCCC--------HHHHHHHHHHHhhhC
Confidence 4 23578999999999998 346778889998763
No 82
>PRK10162 acetyl esterase; Provisional
Probab=99.83 E-value=3e-18 Score=135.98 Aligned_cols=242 Identities=16% Similarity=0.226 Sum_probs=146.2
Q ss_pred cceeEEecCCCcEEEEEecCCCCCCceEEEEecCCCC---CcchhhHHHHHHHhc-CCcEEEEeccccCcCCCCCCCCCC
Q 020630 30 NGKEYFETPNGKLFTQSFLPLDQKVKATVYMTHGYGS---DTGWMFQKICISYAT-WGYAVFAADLLGHGRSDGIRCYLG 105 (323)
Q Consensus 30 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~vv~~hG~~~---~~~~~~~~~~~~l~~-~g~~vi~~d~~G~G~s~~~~~~~~ 105 (323)
.++..+...+|.+..+.|.|.. ...|+||++||.|. +.. .+..+++.|++ .|+.|+++|+|...+..
T Consensus 57 ~~~~~i~~~~g~i~~~~y~P~~-~~~p~vv~~HGGg~~~g~~~-~~~~~~~~la~~~g~~Vv~vdYrlape~~------- 127 (318)
T PRK10162 57 TRAYMVPTPYGQVETRLYYPQP-DSQATLFYLHGGGFILGNLD-THDRIMRLLASYSGCTVIGIDYTLSPEAR------- 127 (318)
T ss_pred EEEEEEecCCCceEEEEECCCC-CCCCEEEEEeCCcccCCCch-hhhHHHHHHHHHcCCEEEEecCCCCCCCC-------
Confidence 3455666666788889998864 45789999999873 333 56778888877 49999999999654322
Q ss_pred ChHHHHhhHHHHHHHHHh---hCCCCCCCEEEEEechhHHHHHHHHhhc------CCCCeeEEEEccCccCCCCCCchhH
Q 020630 106 DMEKVAASSLSFFKHVRH---SEPYRDLPAFLFGESMGGAATMLMYFQS------EPNTWTGLIFSAPLFVIPENMKPSK 176 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~---~~~~~~~~~~l~G~S~Gg~~a~~~a~~~------p~~~v~~~il~~~~~~~~~~~~~~~ 176 (323)
+....+|+.++++++.. +.+++..+++|+|+|+||.+|+.++... +.. +++++++.|..+..... .
T Consensus 128 -~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~-~~~~vl~~p~~~~~~~~--s- 202 (318)
T PRK10162 128 -FPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGK-VAGVLLWYGLYGLRDSV--S- 202 (318)
T ss_pred -CCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccC-hhheEEECCccCCCCCh--h-
Confidence 22234555555555533 2334466999999999999999988753 245 89999999877643210 0
Q ss_pred HHHHHhhcccccccccccCCCcccccccccChhhHHH---hhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEE
Q 020630 177 LHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKV---IASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLT 253 (323)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 253 (323)
..... ..+.. +........ +..+.... ..+.... ....+.+--.|+++
T Consensus 203 -~~~~~-------~~~~~----------l~~~~~~~~~~~y~~~~~~~-~~p~~~p----------~~~~l~~~lPp~~i 253 (318)
T PRK10162 203 -RRLLG-------GVWDG----------LTQQDLQMYEEAYLSNDADR-ESPYYCL----------FNNDLTRDVPPCFI 253 (318)
T ss_pred -HHHhC-------CCccc----------cCHHHHHHHHHHhCCCcccc-CCcccCc----------chhhhhcCCCCeEE
Confidence 00000 00000 000000000 00000000 0000000 00112122359999
Q ss_pred EeeCCCcccCchhHHHHHHHhc--CCCCcEEEecCCCccccccC-CchhHHHHHHHHHHHHHHHHh
Q 020630 254 VHGTADGVTCPTSSKLLYEKAS--SADKSIKIYDGMYHSLIQGE-PDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 254 i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~i~~fl~~~~~ 316 (323)
++|+.|.+.+ ..+.+.+++. +..+++++++|..|.+.... ..+..++..+.+.+||.+.++
T Consensus 254 ~~g~~D~L~d--e~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 254 AGAEFDPLLD--DSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred EecCCCcCcC--hHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999864 5667777663 34589999999999886432 234466788888999988753
No 83
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.83 E-value=5.7e-19 Score=130.19 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=98.8
Q ss_pred ecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCC
Q 020630 47 FLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEP 126 (323)
Q Consensus 47 ~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 126 (323)
..|.+ .+..+||-+||.++++. .|..+.+.|.+.|.++|.+++||+|.+++.+...++-.+-..-+.++++.+..+
T Consensus 28 ~~~~g-s~~gTVv~~hGsPGSH~-DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~-- 103 (297)
T PF06342_consen 28 SLPSG-SPLGTVVAFHGSPGSHN-DFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIK-- 103 (297)
T ss_pred cCCCC-CCceeEEEecCCCCCcc-chhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCC--
Confidence 33443 45669999999999987 899999999999999999999999999998888888899999999999999986
Q ss_pred CCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCC
Q 020630 127 YRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 127 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~ 169 (323)
.+++++|||.||-.|+.+|..+| ..++++++|...-.
T Consensus 104 ---~~~i~~gHSrGcenal~la~~~~---~~g~~lin~~G~r~ 140 (297)
T PF06342_consen 104 ---GKLIFLGHSRGCENALQLAVTHP---LHGLVLINPPGLRP 140 (297)
T ss_pred ---CceEEEEeccchHHHHHHHhcCc---cceEEEecCCcccc
Confidence 38999999999999999999985 66999998876533
No 84
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.82 E-value=2.6e-19 Score=152.46 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=105.0
Q ss_pred EecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcc--hhh-HHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHH
Q 020630 35 FETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTG--WMF-QKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKV 110 (323)
Q Consensus 35 ~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~--~~~-~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~ 110 (323)
+++.|| +|++..+.|.+.++.|+||++||++.+.. +.+ ......|+++||.|+++|+||+|.|.+..... + ...
T Consensus 1 i~~~DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~-~-~~~ 78 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLL-G-SDE 78 (550)
T ss_pred CcCCCCCEEEEEEEecCCCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEec-C-ccc
Confidence 356789 99999999876567899999999997642 111 22456788899999999999999998764432 2 567
Q ss_pred HhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCC
Q 020630 111 AASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 111 ~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~ 169 (323)
++|+.++|+++..+.. ...+++++|+|+||.+++.+|..+|+. ++++|..++..+..
T Consensus 79 ~~D~~~~i~~l~~q~~-~~~~v~~~G~S~GG~~a~~~a~~~~~~-l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 79 AADGYDLVDWIAKQPW-CDGNVGMLGVSYLAVTQLLAAVLQPPA-LRAIAPQEGVWDLY 135 (550)
T ss_pred chHHHHHHHHHHhCCC-CCCcEEEEEeChHHHHHHHHhccCCCc-eeEEeecCcccchh
Confidence 8999999999987632 246999999999999999999998888 99999988876543
No 85
>PRK10115 protease 2; Provisional
Probab=99.82 E-value=2.2e-18 Score=149.11 Aligned_cols=255 Identities=13% Similarity=0.064 Sum_probs=162.1
Q ss_pred CCccceeEEecCCC-cEEE-EEecCCC--CCCceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCC--
Q 020630 27 GVRNGKEYFETPNG-KLFT-QSFLPLD--QKVKATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSDG-- 99 (323)
Q Consensus 27 ~~~~~~~~~~~~~g-~l~~-~~~~~~~--~~~~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~-- 99 (323)
....+...+++.|| +|.+ .++.+.. .++.|+||++||..+.. ...|......|+++||.|+.++.||-|+-..
T Consensus 413 ~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w 492 (686)
T PRK10115 413 NYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQW 492 (686)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHH
Confidence 44667788999999 9997 4554531 34579999999987653 2356666678889999999999998665431
Q ss_pred -CCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHH
Q 020630 100 -IRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLH 178 (323)
Q Consensus 100 -~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~ 178 (323)
.......-....+|+.+.++++..+...+..++.++|.|.||+++..++.++|++ ++++|+..|..++...+..
T Consensus 493 ~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdl-f~A~v~~vp~~D~~~~~~~---- 567 (686)
T PRK10115 493 YEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPEL-FHGVIAQVPFVDVVTTMLD---- 567 (686)
T ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhh-eeEEEecCCchhHhhhccc----
Confidence 1110001113357788888888777667788999999999999999999999999 9999999998774321100
Q ss_pred HHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCccccc-EEEEeeC
Q 020630 179 LFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVP-FLTVHGT 257 (323)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~i~g~ 257 (323)
..+..... ....... ..++... .++.... ....+.+++.| +|+++|.
T Consensus 568 -------~~~p~~~~---~~~e~G~-p~~~~~~--------------------~~l~~~S-P~~~v~~~~~P~lLi~~g~ 615 (686)
T PRK10115 568 -------ESIPLTTG---EFEEWGN-PQDPQYY--------------------EYMKSYS-PYDNVTAQAYPHLLVTTGL 615 (686)
T ss_pred -------CCCCCChh---HHHHhCC-CCCHHHH--------------------HHHHHcC-chhccCccCCCceeEEecC
Confidence 00000000 0000000 0001011 1111111 12445667889 5677999
Q ss_pred CCcccCchhHHHHHHHhc--CCCCcEEEe---cCCCccccccCCchhHHHHHHHHHHHHHHHHhhcCC
Q 020630 258 ADGVTCPTSSKLLYEKAS--SADKSIKIY---DGMYHSLIQGEPDENANLVLKDMREWIDERVERCGP 320 (323)
Q Consensus 258 ~D~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~~~~ 320 (323)
+|.-||+..+.++..++. +.+.+++++ +++||..- +...... +-......|+-..+....|
T Consensus 616 ~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~-~~r~~~~-~~~A~~~aFl~~~~~~~~~ 681 (686)
T PRK10115 616 HDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGK-SGRFKSY-EGVAMEYAFLIALAQGTLP 681 (686)
T ss_pred CCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCC-cCHHHHH-HHHHHHHHHHHHHhCCcCC
Confidence 999999999999998884 234567777 89999954 2222222 2233456777777665544
No 86
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.81 E-value=5.3e-18 Score=126.90 Aligned_cols=263 Identities=11% Similarity=0.092 Sum_probs=150.9
Q ss_pred eEEecCCCcEEEEEecCCCCCCceEEEEecCCCCCcchhhHHH-----HHHHhcCCcEEEEeccccCcCCCC--CCC-CC
Q 020630 33 EYFETPNGKLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKI-----CISYATWGYAVFAADLLGHGRSDG--IRC-YL 104 (323)
Q Consensus 33 ~~~~~~~g~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~-----~~~l~~~g~~vi~~d~~G~G~s~~--~~~-~~ 104 (323)
+.+.+.-|.|++.++|..+ +.+|++|-.|..|.+....|..+ ...+.++ |.++-+|.||+..-.. +.+ ..
T Consensus 2 h~v~t~~G~v~V~v~G~~~-~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~-f~i~Hi~aPGqe~ga~~~p~~y~y 79 (283)
T PF03096_consen 2 HDVETPYGSVHVTVQGDPK-GNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQN-FCIYHIDAPGQEEGAATLPEGYQY 79 (283)
T ss_dssp EEEEETTEEEEEEEESS---TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTT-SEEEEEE-TTTSTT-----TT---
T ss_pred ceeccCceEEEEEEEecCC-CCCceEEEeccccccchHHHHHHhcchhHHHHhhc-eEEEEEeCCCCCCCcccccccccc
Confidence 4677888899999999865 46999999999998865345543 3455555 9999999999976543 222 23
Q ss_pred CChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhc
Q 020630 105 GDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGL 184 (323)
Q Consensus 105 ~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~ 184 (323)
++.+++++++..++++++.+ .++-+|-..|++|..++|..+|++ |.++||+++....... ..|...++...
T Consensus 80 Psmd~LAe~l~~Vl~~f~lk------~vIg~GvGAGAnIL~rfAl~~p~~-V~GLiLvn~~~~~~gw--~Ew~~~K~~~~ 150 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHFGLK------SVIGFGVGAGANILARFALKHPER-VLGLILVNPTCTAAGW--MEWFYQKLSSW 150 (283)
T ss_dssp --HHHHHCTHHHHHHHHT---------EEEEEETHHHHHHHHHHHHSGGG-EEEEEEES---S---H--HHHHHHHHH--
T ss_pred cCHHHHHHHHHHHHHhCCcc------EEEEEeeccchhhhhhccccCccc-eeEEEEEecCCCCccH--HHHHHHHHhcc
Confidence 58999999999999999987 799999999999999999999999 9999999987653321 22222222211
Q ss_pred ccccccccccCCCcccccccc------cChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCC
Q 020630 185 LFGLADTWAAMPDNKMVGKAI------KDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTA 258 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~ 258 (323)
.-... .+.......++...+ .+......+...............+...+....++....+...||+|++.|+.
T Consensus 151 ~L~~~-gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~ 229 (283)
T PF03096_consen 151 LLYSY-GMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDN 229 (283)
T ss_dssp ------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETT
T ss_pred ccccc-ccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecC
Confidence 00000 010000001111111 11111111111111111112233333344444556666777789999999999
Q ss_pred CcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 259 DGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 259 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
.+.+ +.+.++..++....+++..++++|=... ++.+.++.+.+.=|++.
T Consensus 230 Sp~~--~~vv~~ns~Ldp~~ttllkv~dcGglV~----eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 230 SPHV--DDVVEMNSKLDPTKTTLLKVADCGGLVL----EEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp STTH--HHHHHHHHHS-CCCEEEEEETT-TT-HH----HH-HHHHHHHHHHHHHH
T ss_pred Ccch--hhHHHHHhhcCcccceEEEecccCCccc----ccCcHHHHHHHHHHHcc
Confidence 8764 5667888888656678999999999998 55567788888888864
No 87
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=4.2e-18 Score=123.23 Aligned_cols=225 Identities=18% Similarity=0.203 Sum_probs=139.2
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHH-HHhhCCCCCCC
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH-VRHSEPYRDLP 131 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~-l~~~~~~~~~~ 131 (323)
..+..++++|-.|+++. .|+.+...|... +.++++++||+|..-..+.. .+++++++.+...+.. .. +.+
T Consensus 5 ~~~~~L~cfP~AGGsa~-~fr~W~~~lp~~-iel~avqlPGR~~r~~ep~~-~di~~Lad~la~el~~~~~------d~P 75 (244)
T COG3208 5 GARLRLFCFPHAGGSAS-LFRSWSRRLPAD-IELLAVQLPGRGDRFGEPLL-TDIESLADELANELLPPLL------DAP 75 (244)
T ss_pred CCCceEEEecCCCCCHH-HHHHHHhhCCch-hheeeecCCCcccccCCccc-ccHHHHHHHHHHHhccccC------CCC
Confidence 34778899998888887 888888888764 99999999999987655443 3889988888887774 32 458
Q ss_pred EEEEEechhHHHHHHHHhhcCCC--CeeEEEEccCccCCCCCCc--hhHHHHHHhhcccccccccccCCCcccccccccC
Q 020630 132 AFLFGESMGGAATMLMYFQSEPN--TWTGLIFSAPLFVIPENMK--PSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKD 207 (323)
Q Consensus 132 ~~l~G~S~Gg~~a~~~a~~~p~~--~v~~~il~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (323)
+.++||||||++|.++|.+.... .+.++.+.+.......... ....-..+...+..+... ....+.+
T Consensus 76 ~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~---------p~e~led 146 (244)
T COG3208 76 FALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGT---------PPELLED 146 (244)
T ss_pred eeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCC---------ChHHhcC
Confidence 99999999999999999874221 1455665554332111100 000000111111000000 0011111
Q ss_pred hhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHH-hcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecC
Q 020630 208 PEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQ-DNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDG 286 (323)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (323)
+....+.. ...+.-+.....+. ..-..++||+.++.|++|..+..+....+.+..+ ...++..++|
T Consensus 147 ~El~~l~L------------PilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~-~~f~l~~fdG 213 (244)
T COG3208 147 PELMALFL------------PILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTK-GDFTLRVFDG 213 (244)
T ss_pred HHHHHHHH------------HHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhc-CCceEEEecC
Confidence 11111110 01111111111111 1225789999999999999999999998988874 3689999996
Q ss_pred CCccccccCCchhHHHHHHHHHHHHHH
Q 020630 287 MYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 287 ~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
||++. .+..+++...|.+.+..
T Consensus 214 -gHFfl----~~~~~~v~~~i~~~l~~ 235 (244)
T COG3208 214 -GHFFL----NQQREEVLARLEQHLAH 235 (244)
T ss_pred -cceeh----hhhHHHHHHHHHHHhhh
Confidence 89999 45556677777766653
No 88
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.80 E-value=5.7e-18 Score=129.86 Aligned_cols=258 Identities=13% Similarity=0.139 Sum_probs=155.8
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcc--h--------hhHHHH---HHHhcCCcEEEEeccccCc-CCCCCC----C
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTG--W--------MFQKIC---ISYATWGYAVFAADLLGHG-RSDGIR----C 102 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~--~--------~~~~~~---~~l~~~g~~vi~~d~~G~G-~s~~~~----~ 102 (323)
.|.|..|+.-+.....+||++|++.+++. - .|+.++ +.+.-..|.||+.|..|.. .|+++. .
T Consensus 37 ~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~ 116 (368)
T COG2021 37 RVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPG 116 (368)
T ss_pred EEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCC
Confidence 89999999876555679999999988532 0 244332 1233345999999999865 444321 1
Q ss_pred --------CCCChHHHHhhHHHHHHHHHhhCCCCCCCEE-EEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCc
Q 020630 103 --------YLGDMEKVAASSLSFFKHVRHSEPYRDLPAF-LFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMK 173 (323)
Q Consensus 103 --------~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~-l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~ 173 (323)
...++.+++.--..+++.++++ ++. +||-||||+.|+.++..+|++ |.++|.+++.........
T Consensus 117 g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~------~l~avvGgSmGGMqaleWa~~yPd~-V~~~i~ia~~~r~s~~~i 189 (368)
T COG2021 117 GKPYGSDFPVITIRDMVRAQRLLLDALGIK------KLAAVVGGSMGGMQALEWAIRYPDR-VRRAIPIATAARLSAQNI 189 (368)
T ss_pred CCccccCCCcccHHHHHHHHHHHHHhcCcc------eEeeeeccChHHHHHHHHHHhChHH-HhhhheecccccCCHHHH
Confidence 2246778887778888999876 565 999999999999999999999 999999887654332111
Q ss_pred hhHHHHHHhhcccccccccc--------------------------------cCCCccccccccc----ChhhHHHhhcC
Q 020630 174 PSKLHLFMYGLLFGLADTWA--------------------------------AMPDNKMVGKAIK----DPEKLKVIASN 217 (323)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~ 217 (323)
. +..+....-..-+.|. ....+........ .......+...
T Consensus 190 a---~~~~~r~AI~~DP~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~q 266 (368)
T COG2021 190 A---FNEVQRQAIEADPDWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQ 266 (368)
T ss_pred H---HHHHHHHHHHhCCCccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHH
Confidence 1 1111111000011110 0000000000000 01111111111
Q ss_pred CcccCCCCCchhHHHHHHhhH---------HHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEec-CC
Q 020630 218 PRRYTGKPRVGTMREIARVCQ---------YIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYD-GM 287 (323)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 287 (323)
-..+........+..+.+..+ ++...++++++|++++.-+.|.++|++..+.+.+.+....+ +.+++ ..
T Consensus 267 g~kf~~rfDaNsYL~lt~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~-~~~i~S~~ 345 (368)
T COG2021 267 GDKFVARFDANSYLYLTRALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA-LREIDSPY 345 (368)
T ss_pred HHHHHhccCcchHHHHHHHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc-eEEecCCC
Confidence 122222222333333333322 23344788999999999999999999999999999953333 65554 57
Q ss_pred CccccccCCchhHHHHHHHHHHHHHH
Q 020630 288 YHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 288 gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
||..++.+. +.+...|..||+.
T Consensus 346 GHDaFL~e~----~~~~~~i~~fL~~ 367 (368)
T COG2021 346 GHDAFLVES----EAVGPLIRKFLAL 367 (368)
T ss_pred Cchhhhcch----hhhhHHHHHHhhc
Confidence 999996554 4477788888763
No 89
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.78 E-value=1.7e-17 Score=136.09 Aligned_cols=265 Identities=12% Similarity=0.089 Sum_probs=158.9
Q ss_pred cccccCCccceeEEecCCCcEEEEEecCCC-CCCceEEEEecCCCCCcchhh-----HHHHHHHhcCCcEEEEeccccCc
Q 020630 22 YYTSQGVRNGKEYFETPNGKLFTQSFLPLD-QKVKATVYMTHGYGSDTGWMF-----QKICISYATWGYAVFAADLLGHG 95 (323)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~~~-----~~~~~~l~~~g~~vi~~d~~G~G 95 (323)
|.....+..+...+...++.+..+.|.|.. ...+.+||+++++- +..+.+ +.+++.|.++||.|+.+|+++-+
T Consensus 181 F~vG~~~a~TPg~VV~~n~l~eLiqY~P~te~v~~~PLLIVPp~I-NK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~ 259 (560)
T TIGR01839 181 FEVGKNLATTEGAVVFRNEVLELIQYKPITEQQHARPLLVVPPQI-NKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPD 259 (560)
T ss_pred cccCCCCCCCCCceeEECCceEEEEeCCCCCCcCCCcEEEechhh-hhhheeecCCcchHHHHHHHcCCeEEEEeCCCCC
Confidence 444455555566666666655556666754 24568999999988 443344 57999999999999999999876
Q ss_pred CCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHH----HHhhcCCCCeeEEEEccCccCCCCC
Q 020630 96 RSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATML----MYFQSEPNTWTGLIFSAPLFVIPEN 171 (323)
Q Consensus 96 ~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~----~a~~~p~~~v~~~il~~~~~~~~~~ 171 (323)
.... ..+++++++.+.++|+.+....+ ..++.++|+|+||.++.. +++++++.+|++++++.+..++...
T Consensus 260 ~~~r----~~~ldDYv~~i~~Ald~V~~~tG--~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~ 333 (560)
T TIGR01839 260 KAHR----EWGLSTYVDALKEAVDAVRAITG--SRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTME 333 (560)
T ss_pred hhhc----CCCHHHHHHHHHHHHHHHHHhcC--CCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCC
Confidence 5532 23789999999999999987765 668999999999999997 7788886339999999888876542
Q ss_pred Cchh-H----HHHHHhhcc--cccccc------cccCCCcccc-----ccc-c-cChhhHH--HhhcCCcccCCCCCchh
Q 020630 172 MKPS-K----LHLFMYGLL--FGLADT------WAAMPDNKMV-----GKA-I-KDPEKLK--VIASNPRRYTGKPRVGT 229 (323)
Q Consensus 172 ~~~~-~----~~~~~~~~~--~~~~~~------~~~~~~~~~~-----~~~-~-~~~~~~~--~~~~~~~~~~~~~~~~~ 229 (323)
.... + ........+ .+..+. +.......++ ... . ..+...+ ....+...+..... ..
T Consensus 334 g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~-~e 412 (560)
T TIGR01839 334 SPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFH-GD 412 (560)
T ss_pred CcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHH-HH
Confidence 2111 1 010000000 011110 0000000000 000 0 0000111 11111111111000 11
Q ss_pred HHHHHHhhHHHH----------hcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCC
Q 020630 230 MREIARVCQYIQ----------DNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEP 296 (323)
Q Consensus 230 ~~~~~~~~~~~~----------~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~ 296 (323)
+..++....... -.+++|+||++++.|+.|.++|++.+..+.+.+.+ +++++..+ +||..-+-+|
T Consensus 413 ~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs-~~~fvl~~-gGHIggivnp 487 (560)
T TIGR01839 413 LLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGG-KRRFVLSN-SGHIQSILNP 487 (560)
T ss_pred HHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCC-CeEEEecC-CCccccccCC
Confidence 111211111011 13678999999999999999999999999998865 47777776 5887654433
No 90
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.78 E-value=9e-18 Score=126.95 Aligned_cols=253 Identities=15% Similarity=0.191 Sum_probs=101.4
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCc--chhhHHHHHHHhcCCcEEEEeccc----cCcCCCCCCCCCCChHHHHhhH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDT--GWMFQKICISYATWGYAVFAADLL----GHGRSDGIRCYLGDMEKVAASS 114 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~--~~~~~~~~~~l~~~g~~vi~~d~~----G~G~s~~~~~~~~~~~~~~~d~ 114 (323)
++....+.+........||||.|++... -.+...+++.|.+.||.|+-+-++ |+|.+ +++.-++||
T Consensus 19 ~~~afe~~~~~~~~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~--------SL~~D~~eI 90 (303)
T PF08538_consen 19 KLVAFEFTSSSSSAPNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTS--------SLDRDVEEI 90 (303)
T ss_dssp TTEEEEEEEE-TTSSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHH
T ss_pred CCeEEEecCCCCCCCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcc--------hhhhHHHHH
Confidence 3444555554323577999999998642 225678999998789999998765 45544 799999999
Q ss_pred HHHHHHHHhhCCC--CCCCEEEEEechhHHHHHHHHhhcCC----CCeeEEEEccCccCCCCCCchhHH---HHHHhhcc
Q 020630 115 LSFFKHVRHSEPY--RDLPAFLFGESMGGAATMLMYFQSEP----NTWTGLIFSAPLFVIPENMKPSKL---HLFMYGLL 185 (323)
Q Consensus 115 ~~~i~~l~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~----~~v~~~il~~~~~~~~~~~~~~~~---~~~~~~~~ 185 (323)
.++|++++...+. ...+|+|+|||-|+.-+++|+..... ..|+++||-+|..+-......... ........
T Consensus 91 ~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A 170 (303)
T PF08538_consen 91 AQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALA 170 (303)
T ss_dssp HHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHH
T ss_pred HHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHH
Confidence 9999999988421 25699999999999999999987532 339999999998875443322111 22222221
Q ss_pred cccccccccCCCcccccc-----cc-cChh-hHHHhhcCCcccCCCCCchhHHHHHH---hhHHHHhcCCcccccEEEEe
Q 020630 186 FGLADTWAAMPDNKMVGK-----AI-KDPE-KLKVIASNPRRYTGKPRVGTMREIAR---VCQYIQDNFSKVTVPFLTVH 255 (323)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~l~i~ 255 (323)
..+... ......+.. .. ..+. ..++.. ......-.+++. ..+.+...+.++.+|+|++.
T Consensus 171 ~~~i~~---g~~~~~lp~~~~~~~~~~~PiTA~Rf~S--------L~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~ 239 (303)
T PF08538_consen 171 KELIAE---GKGDEILPREFTPLVFYDTPITAYRFLS--------LASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLY 239 (303)
T ss_dssp HHHHHC---T-TT-GG----GGTTT-SS---HHHHHT---------S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEE
T ss_pred HHHHHc---CCCCceeeccccccccCCCcccHHHHHh--------ccCCCCcccccCCCCCHHHHHHHhccCCCceEEEe
Confidence 111100 000000000 00 0000 001110 000011111111 11335677888999999999
Q ss_pred eCCCcccCchh-HHHHHHHhc---CC---CCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 256 GTADGVTCPTS-SKLLYEKAS---SA---DKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 256 g~~D~~~~~~~-~~~~~~~~~---~~---~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
+++|..+|... .+.+.+++. .+ ...--+|+|++|.+--...++..+.+.+.+..||+
T Consensus 240 Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 240 SGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp E--TT-----------------------------------------------------------
T ss_pred cCCCceecccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 99999998643 233444331 11 12345899999999843333345667888888874
No 91
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.78 E-value=4.1e-17 Score=120.26 Aligned_cols=267 Identities=10% Similarity=0.066 Sum_probs=169.7
Q ss_pred cceeEEecCCCcEEEEEecCCCCCCceEEEEecCCCCCcchhhHHH-----HHHHhcCCcEEEEeccccCcCCCC--CCC
Q 020630 30 NGKEYFETPNGKLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKI-----CISYATWGYAVFAADLLGHGRSDG--IRC 102 (323)
Q Consensus 30 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~-----~~~l~~~g~~vi~~d~~G~G~s~~--~~~ 102 (323)
.+++.+.+..|.+++.++|..+ +++|++|-.|.+|.+....|+.+ +..+.++ |.++-+|.||+-.-.. +.+
T Consensus 22 ~~e~~V~T~~G~v~V~V~Gd~~-~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~ 99 (326)
T KOG2931|consen 22 CQEHDVETAHGVVHVTVYGDPK-GNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEG 99 (326)
T ss_pred ceeeeeccccccEEEEEecCCC-CCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCC
Confidence 4678888889999999999876 47889999999998875445543 3456676 9999999999865432 233
Q ss_pred -CCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHH
Q 020630 103 -YLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFM 181 (323)
Q Consensus 103 -~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~ 181 (323)
..++.+++++++..+++++..+ .++-+|-..|++|..++|..||++ |-++||+++....... ..|...++
T Consensus 100 y~yPsmd~LAd~l~~VL~~f~lk------~vIg~GvGAGAyIL~rFAl~hp~r-V~GLvLIn~~~~a~gw--iew~~~K~ 170 (326)
T KOG2931|consen 100 YPYPSMDDLADMLPEVLDHFGLK------SVIGMGVGAGAYILARFALNHPER-VLGLVLINCDPCAKGW--IEWAYNKV 170 (326)
T ss_pred CCCCCHHHHHHHHHHHHHhcCcc------eEEEecccccHHHHHHHHhcChhh-eeEEEEEecCCCCchH--HHHHHHHH
Confidence 2358999999999999999976 789999999999999999999999 9999999986653322 22222222
Q ss_pred hhcc-c--ccccccccCCCccccc-ccc-cChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCC----cccccEE
Q 020630 182 YGLL-F--GLADTWAAMPDNKMVG-KAI-KDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFS----KVTVPFL 252 (323)
Q Consensus 182 ~~~~-~--~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~P~l 252 (323)
...+ . .+............+. ... .+....+.+........+...+..+.+.+....++..... .++||+|
T Consensus 171 ~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vl 250 (326)
T KOG2931|consen 171 SSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVL 250 (326)
T ss_pred HHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEE
Confidence 2100 0 0000000000000000 000 1111222222211111122222223333332222222222 4569999
Q ss_pred EEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 253 TVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 253 ~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
++.|++.+.+ +.+.++..++...+..+..+.++|-.+..++| .++.+.+.=|++.
T Consensus 251 lvvGd~Sp~~--~~vv~~n~~Ldp~~ttllk~~d~g~l~~e~qP----~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 251 LVVGDNSPHV--SAVVECNSKLDPTYTTLLKMADCGGLVQEEQP----GKLAEAFKYFLQG 305 (326)
T ss_pred EEecCCCchh--hhhhhhhcccCcccceEEEEcccCCcccccCc----hHHHHHHHHHHcc
Confidence 9999998775 45666777775457889999999999885555 5688888888764
No 92
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=2.6e-17 Score=119.81 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=162.1
Q ss_pred cCCccceeEEecCCC-cEEEEEecCCCC-CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCC----
Q 020630 26 QGVRNGKEYFETPNG-KLFTQSFLPLDQ-KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDG---- 99 (323)
Q Consensus 26 ~~~~~~~~~~~~~~g-~l~~~~~~~~~~-~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~---- 99 (323)
..++.-+.+++..+| +|..+...|... +..|.||-.||++++.. .|..+.. ++..||.|+.+|.||.|.|+.
T Consensus 52 ~~ve~ydvTf~g~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g-~~~~~l~-wa~~Gyavf~MdvRGQg~~~~dt~~ 129 (321)
T COG3458 52 PRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGG-EWHDMLH-WAVAGYAVFVMDVRGQGSSSQDTAD 129 (321)
T ss_pred CceEEEEEEEeccCCceEEEEEEeecccCCccceEEEEeeccCCCC-Ccccccc-ccccceeEEEEecccCCCccccCCC
Confidence 344445677888999 999999999765 66799999999998865 5655443 556799999999999998842
Q ss_pred CCCC----------------CCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEcc
Q 020630 100 IRCY----------------LGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSA 163 (323)
Q Consensus 100 ~~~~----------------~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~ 163 (323)
.+.. .+-+.....|+..+++.+..-..++.+++.+.|.|.||.+++.+++..|. |+++++.-
T Consensus 130 ~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~r--ik~~~~~~ 207 (321)
T COG3458 130 PPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPR--IKAVVADY 207 (321)
T ss_pred CCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChh--hhcccccc
Confidence 1110 11234456788888888888888888999999999999999999998776 99999988
Q ss_pred CccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhc
Q 020630 164 PLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDN 243 (323)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (323)
|...-..... .. ... -............... -.....-+.. -+....
T Consensus 208 Pfl~df~r~i-------------------~~-~~~------~~ydei~~y~k~h~~~------e~~v~~TL~y-fD~~n~ 254 (321)
T COG3458 208 PFLSDFPRAI-------------------EL-ATE------GPYDEIQTYFKRHDPK------EAEVFETLSY-FDIVNL 254 (321)
T ss_pred cccccchhhe-------------------ee-ccc------CcHHHHHHHHHhcCch------HHHHHHHHhh-hhhhhH
Confidence 8765221100 00 000 0000011111111000 0000000111 113345
Q ss_pred CCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 244 FSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 244 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
..++++|+|+..|--|.++|+...-.+++.+.. .+++.+++.-+|... |. -..+.+..|+...
T Consensus 255 A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~-~K~i~iy~~~aHe~~---p~----~~~~~~~~~l~~l 317 (321)
T COG3458 255 AARIKVPVLMSVGLMDPVCPPSTQFAAYNALTT-SKTIEIYPYFAHEGG---PG----FQSRQQVHFLKIL 317 (321)
T ss_pred HHhhccceEEeecccCCCCCChhhHHHhhcccC-CceEEEeeccccccC---cc----hhHHHHHHHHHhh
Confidence 577899999999999999999999999999964 367788887778877 22 1334466776643
No 93
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.77 E-value=3.5e-17 Score=116.32 Aligned_cols=259 Identities=17% Similarity=0.228 Sum_probs=155.2
Q ss_pred eEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCC--CCCCChHH
Q 020630 33 EYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIR--CYLGDMEK 109 (323)
Q Consensus 33 ~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~--~~~~~~~~ 109 (323)
..+...|| .+....|-..+ +....|++-.+.|.. ..+|+.++..++++||.|+++|+||.|.|.... ...+.+.+
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-~~~g~~~va~a~Gv~-~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~D 85 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-KASGRLVVAGATGVG-QYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLD 85 (281)
T ss_pred cccccCCCccCccccccCCC-CCCCcEEecccCCcc-hhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhh
Confidence 56788999 99998887654 223344444444443 348999999999999999999999999998543 22346666
Q ss_pred HH-hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHH--HHHHhhccc
Q 020630 110 VA-ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKL--HLFMYGLLF 186 (323)
Q Consensus 110 ~~-~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~--~~~~~~~~~ 186 (323)
++ .|+.+.++.++...+ ..+...+|||+||.+.-.+. +++. ..+....+........+..... ...+.....
T Consensus 86 wA~~D~~aal~~~~~~~~--~~P~y~vgHS~GGqa~gL~~-~~~k--~~a~~vfG~gagwsg~m~~~~~l~~~~l~~lv~ 160 (281)
T COG4757 86 WARLDFPAALAALKKALP--GHPLYFVGHSFGGQALGLLG-QHPK--YAAFAVFGSGAGWSGWMGLRERLGAVLLWNLVG 160 (281)
T ss_pred hhhcchHHHHHHHHhhCC--CCceEEeeccccceeecccc-cCcc--cceeeEeccccccccchhhhhcccceeeccccc
Confidence 66 799999999988554 66899999999999765544 4453 5555555544443332221110 000001111
Q ss_pred ccccccccCCCccccccc--ccChhhHHH--hhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCccc
Q 020630 187 GLADTWAAMPDNKMVGKA--IKDPEKLKV--IASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVT 262 (323)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~ 262 (323)
.....|.......++... +.....+++ ....+..+...+.. ....+..+.+++|++++...+|+.+
T Consensus 161 p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~----------~~~~q~yaaVrtPi~~~~~~DD~w~ 230 (281)
T COG4757 161 PPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAM----------RNYRQVYAAVRTPITFSRALDDPWA 230 (281)
T ss_pred cchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhH----------hHHHHHHHHhcCceeeeccCCCCcC
Confidence 111111111111111111 111111111 11112111111111 1134455678999999999999999
Q ss_pred CchhHHHHHHHhcCCCCcEEEecC----CCccccccCCchhHHHHHHHHHHHH
Q 020630 263 CPTSSKLLYEKASSADKSIKIYDG----MYHSLIQGEPDENANLVLKDMREWI 311 (323)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~----~gH~~~~~~~~~~~~~~~~~i~~fl 311 (323)
|+...+.+.+...+...+...++. .||+..+-++ .|.+.+.+++|+
T Consensus 231 P~As~d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~---~Ealwk~~L~w~ 280 (281)
T COG4757 231 PPASRDAFASFYRNAPLEMRDLPRAEGPLGHMGYFREP---FEALWKEMLGWF 280 (281)
T ss_pred CHHHHHHHHHhhhcCcccceecCcccCcccchhhhccc---hHHHHHHHHHhh
Confidence 999999999888555556666654 4899987555 256777787775
No 94
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.76 E-value=6.1e-17 Score=116.18 Aligned_cols=231 Identities=14% Similarity=0.129 Sum_probs=125.7
Q ss_pred eeEEecCCC-cEEEEEecCCCC--CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccC-cCCCCCCCCCCCh
Q 020630 32 KEYFETPNG-KLFTQSFLPLDQ--KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGH-GRSDGIRCYLGDM 107 (323)
Q Consensus 32 ~~~~~~~~g-~l~~~~~~~~~~--~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~-G~s~~~~~~~~~~ 107 (323)
++.+...+| +|+.+.-.|... ..+++||+..|++.... .+..++.+|+.+||+|+.+|.-.| |.|++.-.. +++
T Consensus 4 dhvi~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmd-h~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~e-ftm 81 (294)
T PF02273_consen 4 DHVIRLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMD-HFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINE-FTM 81 (294)
T ss_dssp EEEEEETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGG-GGHHHHHHHHTTT--EEEE---B--------------H
T ss_pred cceeEcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHH-HHHHHHHHHhhCCeEEEeccccccccCCCCChhh-cch
Confidence 456778889 999999888763 34589999999998776 899999999999999999998765 888876544 388
Q ss_pred HHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccc
Q 020630 108 EKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFG 187 (323)
Q Consensus 108 ~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (323)
....+++..+++++.... ..++.|+.-|+.|.+|...|.+ .+ +.-+|..-+..++............+......
T Consensus 82 s~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i~--lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~ 155 (294)
T PF02273_consen 82 SIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-IN--LSFLITAVGVVNLRDTLEKALGYDYLQLPIEQ 155 (294)
T ss_dssp HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S----SEEEEES--S-HHHHHHHHHSS-GGGS-GGG
T ss_pred HHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-cC--cceEEEEeeeeeHHHHHHHHhccchhhcchhh
Confidence 888999999999999553 5679999999999999999985 33 67777766655422111100000000000000
Q ss_pred cccccccCCCcccccccccCh-hhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchh
Q 020630 188 LADTWAAMPDNKMVGKAIKDP-EKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTS 266 (323)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~ 266 (323)
+... ..+....+... .....+..... ........++.+++|++.+++++|.+|....
T Consensus 156 lp~d------ldfeGh~l~~~vFv~dc~e~~w~----------------~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~e 213 (294)
T PF02273_consen 156 LPED------LDFEGHNLGAEVFVTDCFEHGWD----------------DLDSTINDMKRLSIPFIAFTANDDDWVKQSE 213 (294)
T ss_dssp --SE------EEETTEEEEHHHHHHHHHHTT-S----------------SHHHHHHHHTT--S-EEEEEETT-TTS-HHH
T ss_pred CCCc------ccccccccchHHHHHHHHHcCCc----------------cchhHHHHHhhCCCCEEEEEeCCCccccHHH
Confidence 0000 00001001000 11111111110 0122345678889999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEecCCCcccc
Q 020630 267 SKLLYEKASSADKSIKIYDGMYHSLI 292 (323)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~gH~~~ 292 (323)
..++...+.++.++++.++|+.|.+-
T Consensus 214 V~~~~~~~~s~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 214 VEELLDNINSNKCKLYSLPGSSHDLG 239 (294)
T ss_dssp HHHHHTT-TT--EEEEEETT-SS-TT
T ss_pred HHHHHHhcCCCceeEEEecCccchhh
Confidence 99999888778889999999999987
No 95
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.76 E-value=4.5e-18 Score=103.89 Aligned_cols=78 Identities=36% Similarity=0.625 Sum_probs=71.6
Q ss_pred C-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHH
Q 020630 40 G-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFF 118 (323)
Q Consensus 40 g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i 118 (323)
| +|+++.|.|+++ ++.+|+++||++.++. .|..+++.|+++||.|+++|+||||.|.+......+++++++|+..++
T Consensus 1 G~~L~~~~w~p~~~-~k~~v~i~HG~~eh~~-ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 1 GTKLFYRRWKPENP-PKAVVVIVHGFGEHSG-RYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CcEEEEEEecCCCC-CCEEEEEeCCcHHHHH-HHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHh
Confidence 5 899999999874 7999999999998887 899999999999999999999999999988888789999999999887
Q ss_pred H
Q 020630 119 K 119 (323)
Q Consensus 119 ~ 119 (323)
+
T Consensus 79 ~ 79 (79)
T PF12146_consen 79 Q 79 (79)
T ss_pred C
Confidence 4
No 96
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.76 E-value=3.4e-17 Score=127.50 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=98.7
Q ss_pred CC-cEEEEEecC--CCCCCceEEEEecCCCCCcchhhHH---------HHHHHhcCCcEEEEeccccCcCCCCCCCCCCC
Q 020630 39 NG-KLFTQSFLP--LDQKVKATVYMTHGYGSDTGWMFQK---------ICISYATWGYAVFAADLLGHGRSDGIRCYLGD 106 (323)
Q Consensus 39 ~g-~l~~~~~~~--~~~~~~~~vv~~hG~~~~~~~~~~~---------~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~ 106 (323)
|| +|.+.+|.| ...++.|+||..|+++......... ....|+++||.|+..|.||.|.|.+.....
T Consensus 1 DGv~L~adv~~P~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~-- 78 (272)
T PF02129_consen 1 DGVRLAADVYRPGADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM-- 78 (272)
T ss_dssp TS-EEEEEEEEE--TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT--
T ss_pred CCCEEEEEEEecCCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC--
Confidence 78 999999999 6667889999999999653211111 112388999999999999999999876542
Q ss_pred hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCC
Q 020630 107 MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPE 170 (323)
Q Consensus 107 ~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~ 170 (323)
.....+|..++|+++..+ +.++.+|.++|.|++|..++.+|...|.. +++++...+..+...
T Consensus 79 ~~~e~~D~~d~I~W~~~Q-pws~G~VGm~G~SY~G~~q~~~A~~~~p~-LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 79 SPNEAQDGYDTIEWIAAQ-PWSNGKVGMYGISYGGFTQWAAAARRPPH-LKAIVPQSGWSDLYR 140 (272)
T ss_dssp SHHHHHHHHHHHHHHHHC-TTEEEEEEEEEETHHHHHHHHHHTTT-TT-EEEEEEESE-SBTCC
T ss_pred ChhHHHHHHHHHHHHHhC-CCCCCeEEeeccCHHHHHHHHHHhcCCCC-ceEEEecccCCcccc
Confidence 566789999999999988 66677999999999999999999977777 999999888776654
No 97
>COG0400 Predicted esterase [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=116.25 Aligned_cols=180 Identities=16% Similarity=0.148 Sum_probs=124.5
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEecccc--CcCCC---CCCCCCCC---hHHHHhhHHHHHHHHHhh
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLG--HGRSD---GIRCYLGD---MEKVAASSLSFFKHVRHS 124 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G--~G~s~---~~~~~~~~---~~~~~~d~~~~i~~l~~~ 124 (323)
...|+||++||+|++.. .+-.+.+.+..+ +.++.+-=+- .|.-. ......++ ...-++.+.++++.+..+
T Consensus 16 p~~~~iilLHG~Ggde~-~~~~~~~~~~P~-~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~~ 93 (207)
T COG0400 16 PAAPLLILLHGLGGDEL-DLVPLPELILPN-ATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAEE 93 (207)
T ss_pred CCCcEEEEEecCCCChh-hhhhhhhhcCCC-CeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 55779999999998755 555555555554 6666553110 00000 00111122 333345566777777777
Q ss_pred CCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCccccccc
Q 020630 125 EPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKA 204 (323)
Q Consensus 125 ~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
.+.+..+++++|+|.||++++.+..++|.. ++++|+.++........
T Consensus 94 ~gi~~~~ii~~GfSqGA~ial~~~l~~~~~-~~~ail~~g~~~~~~~~-------------------------------- 140 (207)
T COG0400 94 YGIDSSRIILIGFSQGANIALSLGLTLPGL-FAGAILFSGMLPLEPEL-------------------------------- 140 (207)
T ss_pred hCCChhheEEEecChHHHHHHHHHHhCchh-hccchhcCCcCCCCCcc--------------------------------
Confidence 777788999999999999999999999998 99999999876533110
Q ss_pred ccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhc--CCCCcEE
Q 020630 205 IKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKAS--SADKSIK 282 (323)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~ 282 (323)
....-..|+++++|+.|+++|...+.++.+.+. +.+++..
T Consensus 141 --------------------------------------~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~ 182 (207)
T COG0400 141 --------------------------------------LPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVR 182 (207)
T ss_pred --------------------------------------ccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEE
Confidence 001125799999999999999999888888773 3567778
Q ss_pred EecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 283 IYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 283 ~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
.++ .||... .+..+.+.+|+.+.
T Consensus 183 ~~~-~GH~i~--------~e~~~~~~~wl~~~ 205 (207)
T COG0400 183 WHE-GGHEIP--------PEELEAARSWLANT 205 (207)
T ss_pred Eec-CCCcCC--------HHHHHHHHHHHHhc
Confidence 888 799998 33556677788764
No 98
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.74 E-value=1.8e-16 Score=126.40 Aligned_cols=246 Identities=10% Similarity=0.025 Sum_probs=149.9
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
.|+||++..+.++.....+.+++.|.. |+.|+..|+.--+..+..... .+++++++.+.++++.++ . ++++
T Consensus 102 ~~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~-f~ldDYi~~l~~~i~~~G------~-~v~l 172 (406)
T TIGR01849 102 GPAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSAGK-FDLEDYIDYLIEFIRFLG------P-DIHV 172 (406)
T ss_pred CCcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhcCC-CCHHHHHHHHHHHHHHhC------C-CCcE
Confidence 379999999886654355778999998 999999999877755432333 388999988888888773 2 4899
Q ss_pred EEechhHHHHHHHHhhc-----CCCCeeEEEEccCccCCCCCCchhHHH------HHHhhcc-cc-----------cccc
Q 020630 135 FGESMGGAATMLMYFQS-----EPNTWTGLIFSAPLFVIPENMKPSKLH------LFMYGLL-FG-----------LADT 191 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a~~~-----p~~~v~~~il~~~~~~~~~~~~~~~~~------~~~~~~~-~~-----------~~~~ 191 (323)
+|+|+||.+++.+++.. |.+ ++++++++++.++.........+ ..+.... .. ..+.
T Consensus 173 ~GvCqgG~~~laa~Al~a~~~~p~~-~~sltlm~~PID~~~~p~~v~~~a~~~~i~~~~~~~i~~vp~~~~g~gr~v~PG 251 (406)
T TIGR01849 173 IAVCQPAVPVLAAVALMAENEPPAQ-PRSMTLMGGPIDARASPTVVNELAREKPIEWFQHNVIMRVPFPYPGAGRLVYPG 251 (406)
T ss_pred EEEchhhHHHHHHHHHHHhcCCCCC-cceEEEEecCccCCCCCchHHHHhhcccHHHHHHHhhhccCccccCCCCcccCH
Confidence 99999999977666654 566 99999999988876532221111 1111111 00 0000
Q ss_pred ccc-------CCCc------ccccccc-cC-hhhHH---HhhcCCcccCCCCCchhHHHHH----HhhHHH---------
Q 020630 192 WAA-------MPDN------KMVGKAI-KD-PEKLK---VIASNPRRYTGKPRVGTMREIA----RVCQYI--------- 240 (323)
Q Consensus 192 ~~~-------~~~~------~~~~~~~-~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------- 240 (323)
+.. .+.+ .++.... .+ +.... +.... ... .......+.+.. ......
T Consensus 252 ~~~~~~F~~mnp~r~~~~~~~~~~~l~~gd~~~~~~~~~f~~~y-~d~-~dlpge~y~~~v~~vf~~n~L~~G~l~v~G~ 329 (406)
T TIGR01849 252 FLQLAGFISMNLDRHTKAHSDFFLHLVKGDGQEADKHRIFYDEY-LAV-MDMTAEFYLQTIDVVFQQFLLPQGKFIVEGK 329 (406)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHhcCCcchHHHHHHHHHHh-hhc-cCCcHHHHHHHHHHHHHhCCccCCcEEECCE
Confidence 000 0000 0000000 00 00000 00000 000 000111111111 111000
Q ss_pred HhcCCccc-ccEEEEeeCCCcccCchhHHHHHHHh---cCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 241 QDNFSKVT-VPFLTVHGTADGVTCPTSSKLLYEKA---SSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 241 ~~~~~~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
.-.+++|+ +|+|.+.|++|.++|++.+..+.+.+ ++.+.+....+++||...+... ...++++..|.+||.+
T Consensus 330 ~Vdl~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~-r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 330 RVDPGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGS-RFREEIYPLVREFIRR 405 (406)
T ss_pred EecHHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeCh-hhhhhhchHHHHHHHh
Confidence 01357888 99999999999999999999988875 4455667788889999997654 5678899999999975
No 99
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.73 E-value=3.3e-16 Score=124.59 Aligned_cols=292 Identities=14% Similarity=0.065 Sum_probs=175.8
Q ss_pred ccccccccCCccceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhh------HHHHHHHhcCCcEEEEecc
Q 020630 19 EEEYYTSQGVRNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMF------QKICISYATWGYAVFAADL 91 (323)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~------~~~~~~l~~~g~~vi~~d~ 91 (323)
..+.....+.+.|++.+.+.|| -|...+..... +++|+|++.||+-+++. .| +.++-.|+++||.|..-+.
T Consensus 37 ~~~~i~~~gy~~E~h~V~T~DgYiL~lhRIp~~~-~~rp~Vll~HGLl~sS~-~Wv~n~p~~sLaf~LadaGYDVWLgN~ 114 (403)
T KOG2624|consen 37 TPEIIEKYGYPVEEHEVTTEDGYILTLHRIPRGK-KKRPVVLLQHGLLASSS-SWVLNGPEQSLAFLLADAGYDVWLGNN 114 (403)
T ss_pred HHHHHHHcCCceEEEEEEccCCeEEEEeeecCCC-CCCCcEEEeeccccccc-cceecCccccHHHHHHHcCCceeeecC
Confidence 3455678899999999999999 66666554443 77999999999987765 34 3466678999999999999
Q ss_pred ccCcCCCCC--------C-CCCCChHHHH-hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC--CCeeEE
Q 020630 92 LGHGRSDGI--------R-CYLGDMEKVA-ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP--NTWTGL 159 (323)
Q Consensus 92 ~G~G~s~~~--------~-~~~~~~~~~~-~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~--~~v~~~ 159 (323)
||...|... . ....++++++ .|+.+.|+++....+ ..+++.+|||.|+...+.++...|+ .+|+..
T Consensus 115 RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~--~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~ 192 (403)
T KOG2624|consen 115 RGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKTG--QEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSF 192 (403)
T ss_pred cCcccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhcc--ccceEEEEEEccchhheehhcccchhhhhhhee
Confidence 998777521 1 2234677755 799999999988754 5699999999999999998888755 239999
Q ss_pred EEccCccCCCCCCchhHH-HHHH---hhcccccccccccCCCcc----cccccccCh-hhHH----------------Hh
Q 020630 160 IFSAPLFVIPENMKPSKL-HLFM---YGLLFGLADTWAAMPDNK----MVGKAIKDP-EKLK----------------VI 214 (323)
Q Consensus 160 il~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~----------------~~ 214 (323)
++++|+............ .... ...+..+.......+... +........ .... +.
T Consensus 193 ~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n 272 (403)
T KOG2624|consen 193 IALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWN 272 (403)
T ss_pred eeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhh
Confidence 999998854411111110 0000 000111111111111111 000000000 0000 00
Q ss_pred hcCC-cccCCCCCchhHHHHHHhhH-------------------------HHHhcCCcccccEEEEeeCCCcccCchhHH
Q 020630 215 ASNP-RRYTGKPRVGTMREIARVCQ-------------------------YIQDNFSKVTVPFLTVHGTADGVTCPTSSK 268 (323)
Q Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~ 268 (323)
.... ..+...+.......+..... ...-.+.++++|+.+.+|+.|.++.++.+.
T Consensus 273 ~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~ 352 (403)
T KOG2624|consen 273 TTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVL 352 (403)
T ss_pred hcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHH
Confidence 0000 00111111111111111110 011235677999999999999999999999
Q ss_pred HHHHHhcCCCCcEE-EecCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 269 LLYEKASSADKSIK-IYDGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 269 ~~~~~~~~~~~~~~-~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
.+...+........ .+++-.|.-++- ..+..+.+.+.|.+.++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~ynHlDFi~-g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 353 ILLLVLPNSVIKYIVPIPEYNHLDFIW-GLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred HHHHhcccccccccccCCCccceeeee-ccCcHHHHHHHHHHHHHhhh
Confidence 88877732222122 278888987742 23556778888888877554
No 100
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.72 E-value=2e-16 Score=127.54 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=86.5
Q ss_pred CceEEEEecCCCCCcch-hhHH-HHHHHhc--CCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCC
Q 020630 54 VKATVYMTHGYGSDTGW-MFQK-ICISYAT--WGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRD 129 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~-~~~~-~~~~l~~--~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~ 129 (323)
.+|++|++||++.+..+ .|.. +.+.|.. .+|+||++|++|+|.+..+.... ....+++++.++++.+....+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~-~t~~vg~~la~lI~~L~~~~gl~l 118 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAA-YTKLVGKDVAKFVNWMQEEFNYPW 118 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccc-cHHHHHHHHHHHHHHHHHhhCCCC
Confidence 37899999999865321 3443 5555542 25999999999999886543322 456778889999998865433335
Q ss_pred CCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCC
Q 020630 130 LPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 130 ~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~ 168 (323)
.+++|+||||||.+|..++...|.+ |.++++++|+...
T Consensus 119 ~~VhLIGHSLGAhIAg~ag~~~p~r-V~rItgLDPAgP~ 156 (442)
T TIGR03230 119 DNVHLLGYSLGAHVAGIAGSLTKHK-VNRITGLDPAGPT 156 (442)
T ss_pred CcEEEEEECHHHHHHHHHHHhCCcc-eeEEEEEcCCCCc
Confidence 6899999999999999999999988 9999999987543
No 101
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.72 E-value=3.2e-16 Score=111.51 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=99.8
Q ss_pred EEEecCCCCCcchhhHH-HHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEE
Q 020630 58 VYMTHGYGSDTGWMFQK-ICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFG 136 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~-~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G 136 (323)
|+++||++++....|.. +.+.|... ++|-..++ ..++.+++...+.+.+..+ .+++++||
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~-----------~~P~~~~W~~~l~~~i~~~-------~~~~ilVa 61 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW-----------DNPDLDEWVQALDQAIDAI-------DEPTILVA 61 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC-------------TS--HHHHHHHHHHCCHC--------TTTEEEEE
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc-----------CCCCHHHHHHHHHHHHhhc-------CCCeEEEE
Confidence 68999999886445655 55666655 77777665 1126777777777766654 33799999
Q ss_pred echhHHHHHHHH-hhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhh
Q 020630 137 ESMGGAATMLMY-FQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIA 215 (323)
Q Consensus 137 ~S~Gg~~a~~~a-~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (323)
||+|+..+++++ .....+ |++++|++|+........ . .....
T Consensus 62 HSLGc~~~l~~l~~~~~~~-v~g~lLVAp~~~~~~~~~---------------------~---~~~~~------------ 104 (171)
T PF06821_consen 62 HSLGCLTALRWLAEQSQKK-VAGALLVAPFDPDDPEPF---------------------P---PELDG------------ 104 (171)
T ss_dssp ETHHHHHHHHHHHHTCCSS-EEEEEEES--SCGCHHCC---------------------T---CGGCC------------
T ss_pred eCHHHHHHHHHHhhccccc-ccEEEEEcCCCcccccch---------------------h---hhccc------------
Confidence 999999999999 555555 999999998753100000 0 00000
Q ss_pred cCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCcccc
Q 020630 216 SNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLI 292 (323)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 292 (323)
+ .......+.+|.++|.+++|+++|.+.++.+++.+ +++++.++++||+..
T Consensus 105 -----f------------------~~~p~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l---~a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 105 -----F------------------TPLPRDPLPFPSIVIASDNDPYVPFERAQRLAQRL---GAELIILGGGGHFNA 155 (171)
T ss_dssp -----C------------------TTSHCCHHHCCEEEEEETTBSSS-HHHHHHHHHHH---T-EEEEETS-TTSSG
T ss_pred -----c------------------ccCcccccCCCeEEEEcCCCCccCHHHHHHHHHHc---CCCeEECCCCCCccc
Confidence 0 00112345678899999999999999999999999 588999999999988
No 102
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.70 E-value=1.5e-16 Score=123.12 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=89.3
Q ss_pred CC-cEEEEEecCCCCCCceEEEEecCCCCCcchhh-HHHHHHH-hcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHH
Q 020630 39 NG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMF-QKICISY-ATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSL 115 (323)
Q Consensus 39 ~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~-~~~~~~l-~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~ 115 (323)
++ .+.+..+.+. +|++|++||++++....| ..+.+.+ ...+|+|+++|+++++.+... ....+...+.+++.
T Consensus 23 ~~~~~~~~~f~~~----~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~-~a~~~~~~v~~~la 97 (275)
T cd00707 23 DPSSLKNSNFNPS----RPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYP-QAVNNTRVVGAELA 97 (275)
T ss_pred ChhhhhhcCCCCC----CCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChH-HHHHhHHHHHHHHH
Confidence 44 5555555543 789999999998762244 3445444 445799999999988433211 11124566678888
Q ss_pred HHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCC
Q 020630 116 SFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 116 ~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~ 168 (323)
.+++.+....+.+.++++++||||||.+|..++.+++++ |+++++++|+...
T Consensus 98 ~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~-v~~iv~LDPa~p~ 149 (275)
T cd00707 98 KFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGK-LGRITGLDPAGPL 149 (275)
T ss_pred HHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCc-cceeEEecCCccc
Confidence 888888665333356899999999999999999999988 9999999987653
No 103
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.69 E-value=8.8e-16 Score=108.94 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=141.3
Q ss_pred EEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc-cCcCCCCCCC-------CCCChHHHHhh
Q 020630 42 LFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL-GHGRSDGIRC-------YLGDMEKVAAS 113 (323)
Q Consensus 42 l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~-G~G~s~~~~~-------~~~~~~~~~~d 113 (323)
+..|+.+...+ +..||++.-+.+.....-+..++.++.+||.|+.+|+. |--.+...+. ...+.+....+
T Consensus 28 ldaYv~gs~~~--~~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~ 105 (242)
T KOG3043|consen 28 LDAYVVGSTSS--KKVLIVIQDVFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKD 105 (242)
T ss_pred eeEEEecCCCC--CeEEEEEEeeeccccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhH
Confidence 55566666542 35777777765554424678899999999999999965 4222221110 01144555688
Q ss_pred HHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccc
Q 020630 114 SLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWA 193 (323)
Q Consensus 114 ~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (323)
+..++++++.+.. ..++.++|++|||-++..+....+. +.+++..-|...-
T Consensus 106 i~~v~k~lk~~g~--~kkIGv~GfCwGak~vv~~~~~~~~--f~a~v~~hps~~d------------------------- 156 (242)
T KOG3043|consen 106 ITAVVKWLKNHGD--SKKIGVVGFCWGAKVVVTLSAKDPE--FDAGVSFHPSFVD------------------------- 156 (242)
T ss_pred HHHHHHHHHHcCC--cceeeEEEEeecceEEEEeeccchh--heeeeEecCCcCC-------------------------
Confidence 9999999997764 6789999999999999998888774 7777776654320
Q ss_pred cCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHH
Q 020630 194 AMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEK 273 (323)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~ 273 (323)
......+++|++++.|+.|.++|+.....+.+.
T Consensus 157 -----------------------------------------------~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~ 189 (242)
T KOG3043|consen 157 -----------------------------------------------SADIANVKAPILFLFAELDEDVPPKDVKAWEEK 189 (242)
T ss_pred -----------------------------------------------hhHHhcCCCCEEEEeecccccCCHHHHHHHHHH
Confidence 133456789999999999999999998888888
Q ss_pred hcC-C--CCcEEEecCCCccccc-----cCCc--hhHHHHHHHHHHHHHHHH
Q 020630 274 ASS-A--DKSIKIYDGMYHSLIQ-----GEPD--ENANLVLKDMREWIDERV 315 (323)
Q Consensus 274 ~~~-~--~~~~~~~~~~gH~~~~-----~~~~--~~~~~~~~~i~~fl~~~~ 315 (323)
+.. + +.++.++++.+|.++. +.|+ ...++..+.+..||++.+
T Consensus 190 lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 190 LKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 742 2 2369999999999883 2332 366778889999998875
No 104
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.67 E-value=2.1e-14 Score=106.90 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=120.9
Q ss_pred EEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHh
Q 020630 44 TQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRH 123 (323)
Q Consensus 44 ~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~ 123 (323)
..++.|...+.-|+|||+||+..... .|..+.+.++++||.|+.+|+...+.. ......+++.++++|+..
T Consensus 6 l~v~~P~~~g~yPVv~f~~G~~~~~s-~Ys~ll~hvAShGyIVV~~d~~~~~~~--------~~~~~~~~~~~vi~Wl~~ 76 (259)
T PF12740_consen 6 LLVYYPSSAGTYPVVLFLHGFLLINS-WYSQLLEHVASHGYIVVAPDLYSIGGP--------DDTDEVASAAEVIDWLAK 76 (259)
T ss_pred eEEEecCCCCCcCEEEEeCCcCCCHH-HHHHHHHHHHhCceEEEEecccccCCC--------CcchhHHHHHHHHHHHHh
Confidence 34566766567899999999997666 589999999999999999997654331 112223444444554433
Q ss_pred h----CC----CCCCCEEEEEechhHHHHHHHHhhc-----CCCCeeEEEEccCccCCCCCCchhHHHHHHhhccccccc
Q 020630 124 S----EP----YRDLPAFLFGESMGGAATMLMYFQS-----EPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLAD 190 (323)
Q Consensus 124 ~----~~----~~~~~~~l~G~S~Gg~~a~~~a~~~-----p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (323)
. .+ .|..++.|+|||-||-+|..++..+ +.+ ++++++++|..+....... .+
T Consensus 77 ~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~-~~ali~lDPVdG~~~~~~~--------------~P 141 (259)
T PF12740_consen 77 GLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLR-FSALILLDPVDGMSKGSQT--------------EP 141 (259)
T ss_pred cchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccc-eeEEEEeccccccccccCC--------------CC
Confidence 1 11 2466899999999999999999887 445 9999999998753321100 00
Q ss_pred ccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCc---------c
Q 020630 191 TWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADG---------V 261 (323)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~---------~ 261 (323)
. .+. ....--+..+|+++|...-+. -
T Consensus 142 ~--------v~~-------------------------------------~~p~s~~~~~P~lviGtGLg~~~~~~~~~~C 176 (259)
T PF12740_consen 142 P--------VLT-------------------------------------YTPQSFDFSMPALVIGTGLGGEPRNPLFPPC 176 (259)
T ss_pred c--------ccc-------------------------------------CcccccCCCCCeEEEecccCcccccccCCCC
Confidence 0 000 001112346899999777663 2
Q ss_pred cCc-hhHHHHHHHhcCCCCcEEEecCCCccccccCC
Q 020630 262 TCP-TSSKLLYEKASSADKSIKIYDGMYHSLIQGEP 296 (323)
Q Consensus 262 ~~~-~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~ 296 (323)
.|. ..-+++++.+..+ +-..+..+.||+-+++..
T Consensus 177 aP~g~n~~~Ff~~~~~p-~~~~v~~~~GH~d~LDd~ 211 (259)
T PF12740_consen 177 APAGVNYREFFDECKPP-SWHFVAKDYGHMDFLDDD 211 (259)
T ss_pred CCCCCCHHHHHHhcCCC-EEEEEeCCCCchHhhcCC
Confidence 222 2356777777544 566777889999998766
No 105
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.67 E-value=3.6e-15 Score=114.62 Aligned_cols=115 Identities=11% Similarity=0.149 Sum_probs=94.6
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcC---CcEEEEeccccCcCCCCC-----CCCCCChHHHHhhHHHHHHHHHhhCC
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATW---GYAVFAADLLGHGRSDGI-----RCYLGDMEKVAASSLSFFKHVRHSEP 126 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~---g~~vi~~d~~G~G~s~~~-----~~~~~~~~~~~~d~~~~i~~l~~~~~ 126 (323)
+..+||++|.+|-.. +|..+.+.|.++ .+.|+++.+.||-.++.. ....++++++++...++++.+.....
T Consensus 2 ~~li~~IPGNPGlv~-fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~ 80 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVE-FYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKN 80 (266)
T ss_pred cEEEEEECCCCChHH-HHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhc
Confidence 678999999999888 788888877743 799999999999877755 34567999999999999998887531
Q ss_pred CCCCCEEEEEechhHHHHHHHHhhcC---CCCeeEEEEccCccCCCCC
Q 020630 127 YRDLPAFLFGESMGGAATMLMYFQSE---PNTWTGLIFSAPLFVIPEN 171 (323)
Q Consensus 127 ~~~~~~~l~G~S~Gg~~a~~~a~~~p---~~~v~~~il~~~~~~~~~~ 171 (323)
....+++++|||.|++++++++.+.+ .+ |.+++++-|....-..
T Consensus 81 ~~~~~liLiGHSIGayi~levl~r~~~~~~~-V~~~~lLfPTi~~ia~ 127 (266)
T PF10230_consen 81 KPNVKLILIGHSIGAYIALEVLKRLPDLKFR-VKKVILLFPTIEDIAK 127 (266)
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHhccccCCc-eeEEEEeCCccccccC
Confidence 12669999999999999999999988 45 9999999987654333
No 106
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.65 E-value=8.5e-14 Score=110.97 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=137.1
Q ss_pred cCCC-cEEEEEecC--CCCCCceEEEEecCCCCC---cchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHH
Q 020630 37 TPNG-KLFTQSFLP--LDQKVKATVYMTHGYGSD---TGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKV 110 (323)
Q Consensus 37 ~~~g-~l~~~~~~~--~~~~~~~~vv~~hG~~~~---~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~ 110 (323)
..++ .+.++.|.| ......|+||++||.+.. .......+...+...|+.|+++|||-..+- .+...
T Consensus 58 ~~~~~~~~~~~y~p~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~--------~~p~~ 129 (312)
T COG0657 58 GPSGDGVPVRVYRPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH--------PFPAA 129 (312)
T ss_pred CCCCCceeEEEECCCCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC--------CCCch
Confidence 3445 588899998 333457999999998753 231224455555667999999999944332 44555
Q ss_pred HhhHHHHHHHHHhh---CCCCCCCEEEEEechhHHHHHHHHhhcCCC---CeeEEEEccCccCCCCCCchhHHHHHHhhc
Q 020630 111 AASSLSFFKHVRHS---EPYRDLPAFLFGESMGGAATMLMYFQSEPN---TWTGLIFSAPLFVIPENMKPSKLHLFMYGL 184 (323)
Q Consensus 111 ~~d~~~~i~~l~~~---~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~---~v~~~il~~~~~~~~~~~~~~~~~~~~~~~ 184 (323)
.+|+.+.+.++..+ .+.+.+++.++|+|.||.+++.++..-.+. ...+.++++|..+... .....
T Consensus 130 ~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~~~~~-------- 200 (312)
T COG0657 130 LEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-SAASL-------- 200 (312)
T ss_pred HHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-cccch--------
Confidence 66666666666654 345678999999999999999998764421 2789999999877654 11100
Q ss_pred ccccccccccCCCcccccccccChhhH-HHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccC
Q 020630 185 LFGLADTWAAMPDNKMVGKAIKDPEKL-KVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTC 263 (323)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~ 263 (323)
........+ ...... .+............. .....+ ..+.+.. -.|+++++|+.|.+.+
T Consensus 201 --------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-p~~spl------~~~~~~~-lPP~~i~~a~~D~l~~ 260 (312)
T COG0657 201 --------PGYGEADLL----DAAAILAWFADLYLGAAPDRED-PEASPL------ASDDLSG-LPPTLIQTAEFDPLRD 260 (312)
T ss_pred --------hhcCCcccc----CHHHHHHHHHHHhCcCccccCC-CccCcc------ccccccC-CCCEEEEecCCCcchh
Confidence 000000000 000000 000000000000000 000000 0111333 4689999999999987
Q ss_pred chhHHHHHHHhc--CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 264 PTSSKLLYEKAS--SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 264 ~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
..+.+.+++. +..+++..+++..|.+..... .........+.+|+.
T Consensus 261 --~~~~~a~~L~~agv~~~~~~~~g~~H~f~~~~~-~~a~~~~~~~~~~l~ 308 (312)
T COG0657 261 --EGEAYAERLRAAGVPVELRVYPGMIHGFDLLTG-PEARSALRQIAAFLR 308 (312)
T ss_pred --HHHHHHHHHHHcCCeEEEEEeCCcceeccccCc-HHHHHHHHHHHHHHH
Confidence 5566666663 345688999999997754333 233444566667766
No 107
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.65 E-value=6e-16 Score=120.07 Aligned_cols=140 Identities=20% Similarity=0.184 Sum_probs=92.9
Q ss_pred cccCCccceeEEecCCC-cEEEEEecCCC-CCCceEEEEecCCCCCcch---h--------------hHHHHHHHhcCCc
Q 020630 24 TSQGVRNGKEYFETPNG-KLFTQSFLPLD-QKVKATVYMTHGYGSDTGW---M--------------FQKICISYATWGY 84 (323)
Q Consensus 24 ~~~~~~~~~~~~~~~~g-~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~---~--------------~~~~~~~l~~~g~ 84 (323)
...+...++..|.+..+ .+..++..|.+ .++-|+||++||-++.... . -..++..|+++||
T Consensus 82 qrdGY~~EKv~f~~~p~~~vpaylLvPd~~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GY 161 (390)
T PF12715_consen 82 QRDGYTREKVEFNTTPGSRVPAYLLVPDGAKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGY 161 (390)
T ss_dssp EETTEEEEEEEE--STTB-EEEEEEEETT--S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTS
T ss_pred ecCCeEEEEEEEEccCCeeEEEEEEecCCCCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCC
Confidence 45566777888888888 99999999987 5778999999998764321 0 1236788999999
Q ss_pred EEEEeccccCcCCCCCCCC----CCChHHH---------------HhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHH
Q 020630 85 AVFAADLLGHGRSDGIRCY----LGDMEKV---------------AASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATM 145 (323)
Q Consensus 85 ~vi~~d~~G~G~s~~~~~~----~~~~~~~---------------~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~ 145 (323)
.|+++|.+|+|+....... .++.+.+ +-|...+++++.....++.++|.++|+||||..++
T Consensus 162 Vvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~ 241 (390)
T PF12715_consen 162 VVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAW 241 (390)
T ss_dssp EEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHH
T ss_pred EEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHH
Confidence 9999999999998643311 1122222 23556689999998888899999999999999999
Q ss_pred HHHhhcCCCCeeEEEEccCc
Q 020630 146 LMYFQSEPNTWTGLIFSAPL 165 (323)
Q Consensus 146 ~~a~~~p~~~v~~~il~~~~ 165 (323)
.+++..+. |++.|..+-.
T Consensus 242 ~LaALDdR--Ika~v~~~~l 259 (390)
T PF12715_consen 242 WLAALDDR--IKATVANGYL 259 (390)
T ss_dssp HHHHH-TT----EEEEES-B
T ss_pred HHHHcchh--hHhHhhhhhh
Confidence 99999655 8888876643
No 108
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.64 E-value=4.9e-14 Score=101.37 Aligned_cols=182 Identities=16% Similarity=0.144 Sum_probs=106.9
Q ss_pred EEEecCCCCCcc-hhhHHHHHHHhcCC--cEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 58 VYMTHGYGSDTG-WMFQKICISYATWG--YAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 58 vv~~hG~~~~~~-~~~~~~~~~l~~~g--~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
|+++||+.++.. .-...+.+.+.+.+ ..+.++|++ ...+...+.+.++++....+ .+.|
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~------------~~p~~a~~~l~~~i~~~~~~------~~~l 63 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP------------PFPEEAIAQLEQLIEELKPE------NVVL 63 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC------------cCHHHHHHHHHHHHHhCCCC------CeEE
Confidence 799999998753 13344566666654 456667665 24566667777777776533 5999
Q ss_pred EEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHh
Q 020630 135 FGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVI 214 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
+|.||||..|..+|.+++- ++ |+++|+...... +...+..-. .... ....
T Consensus 64 iGSSlGG~~A~~La~~~~~---~a-vLiNPav~p~~~---------l~~~iG~~~----~~~~----~e~~--------- 113 (187)
T PF05728_consen 64 IGSSLGGFYATYLAERYGL---PA-VLINPAVRPYEL---------LQDYIGEQT----NPYT----GESY--------- 113 (187)
T ss_pred EEEChHHHHHHHHHHHhCC---CE-EEEcCCCCHHHH---------HHHhhCccc----cCCC----Cccc---------
Confidence 9999999999999998864 34 888988753211 111111000 0000 0000
Q ss_pred hcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCcccccc
Q 020630 215 ASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQG 294 (323)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 294 (323)
............+......-..+++++.++.|.+++...+. +.. .++..++.+|++|.+.
T Consensus 114 -------------~~~~~~~~~l~~l~~~~~~~~~~~lvll~~~DEvLd~~~a~---~~~--~~~~~~i~~ggdH~f~-- 173 (187)
T PF05728_consen 114 -------------ELTEEHIEELKALEVPYPTNPERYLVLLQTGDEVLDYREAV---AKY--RGCAQIIEEGGDHSFQ-- 173 (187)
T ss_pred -------------eechHhhhhcceEeccccCCCccEEEEEecCCcccCHHHHH---HHh--cCceEEEEeCCCCCCc--
Confidence 00000000000000111223579999999999999985543 333 3345566788899887
Q ss_pred CCchhHHHHHHHHHHHH
Q 020630 295 EPDENANLVLKDMREWI 311 (323)
Q Consensus 295 ~~~~~~~~~~~~i~~fl 311 (323)
..++....|.+|+
T Consensus 174 ----~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 174 ----DFEEYLPQIIAFL 186 (187)
T ss_pred ----cHHHHHHHHHHhh
Confidence 2456777888886
No 109
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.63 E-value=2.8e-14 Score=108.88 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=80.5
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
++|+++|+.+++.. .|..+++.|...++.|+.++++|.+..... ..+++++++...+.|.....+ .++.|+
T Consensus 1 ~~lf~~p~~gG~~~-~y~~la~~l~~~~~~v~~i~~~~~~~~~~~---~~si~~la~~y~~~I~~~~~~-----gp~~L~ 71 (229)
T PF00975_consen 1 RPLFCFPPAGGSAS-SYRPLARALPDDVIGVYGIEYPGRGDDEPP---PDSIEELASRYAEAIRARQPE-----GPYVLA 71 (229)
T ss_dssp -EEEEESSTTCSGG-GGHHHHHHHTTTEEEEEEECSTTSCTTSHE---ESSHHHHHHHHHHHHHHHTSS-----SSEEEE
T ss_pred CeEEEEcCCccCHH-HHHHHHHhCCCCeEEEEEEecCCCCCCCCC---CCCHHHHHHHHHHHhhhhCCC-----CCeeeh
Confidence 47999999999877 899999999764589999999999832211 238999998888877776643 389999
Q ss_pred EechhHHHHHHHHhhc---CCCCeeEEEEccCccC
Q 020630 136 GESMGGAATMLMYFQS---EPNTWTGLIFSAPLFV 167 (323)
Q Consensus 136 G~S~Gg~~a~~~a~~~---p~~~v~~~il~~~~~~ 167 (323)
|||+||.+|+.+|.+- ... +..++++++...
T Consensus 72 G~S~Gg~lA~E~A~~Le~~G~~-v~~l~liD~~~p 105 (229)
T PF00975_consen 72 GWSFGGILAFEMARQLEEAGEE-VSRLILIDSPPP 105 (229)
T ss_dssp EETHHHHHHHHHHHHHHHTT-S-ESEEEEESCSST
T ss_pred ccCccHHHHHHHHHHHHHhhhc-cCceEEecCCCC
Confidence 9999999999999762 334 899999996543
No 110
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.63 E-value=4.5e-13 Score=104.74 Aligned_cols=248 Identities=16% Similarity=0.177 Sum_probs=145.4
Q ss_pred EecCCC-cEEEEEecCCCC---CCceEEEEecCCCCC----cchhhHHHHHHHhc-CCcEEEEeccccCcCCCCCCCCCC
Q 020630 35 FETPNG-KLFTQSFLPLDQ---KVKATVYMTHGYGSD----TGWMFQKICISYAT-WGYAVFAADLLGHGRSDGIRCYLG 105 (323)
Q Consensus 35 ~~~~~g-~l~~~~~~~~~~---~~~~~vv~~hG~~~~----~~~~~~~~~~~l~~-~g~~vi~~d~~G~G~s~~~~~~~~ 105 (323)
++.... .|..++|.|... ...|.||++||+|.- ....|..+...+++ .+..|+++|||-.-+..-+.
T Consensus 66 v~~~~~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa---- 141 (336)
T KOG1515|consen 66 VTIDPFTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFPA---- 141 (336)
T ss_pred eEecCCCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCCc----
Confidence 333444 788899988652 357999999998742 12267777777754 48899999999544443222
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc------CCCCeeEEEEccCccCCCCCCchhHHHH
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS------EPNTWTGLIFSAPLFVIPENMKPSKLHL 179 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~------p~~~v~~~il~~~~~~~~~~~~~~~~~~ 179 (323)
.+++..+.+.-+.+..-.+.+.+..+++|+|-|.||.+|..+|.+. +.+ +++.|++.|...............
T Consensus 142 ~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~k-i~g~ili~P~~~~~~~~~~e~~~~ 220 (336)
T KOG1515|consen 142 AYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPK-IKGQILIYPFFQGTDRTESEKQQN 220 (336)
T ss_pred cchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcc-eEEEEEEecccCCCCCCCHHHHHh
Confidence 3444444444444432223445678999999999999999888762 234 999999999988666554432111
Q ss_pred HHhhcccccccccccCCCcccccccccChhhHHHh-hcCCccc--CCCCCchhHHHHHHhhHHHHhcCCcccc-cEEEEe
Q 020630 180 FMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVI-ASNPRRY--TGKPRVGTMREIARVCQYIQDNFSKVTV-PFLTVH 255 (323)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~l~i~ 255 (323)
.... .. ........+. ...+... ...+...-... ..........+ |+|++.
T Consensus 221 ~~~~---------------~~----~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~------~~~~d~~~~~lp~tlv~~ 275 (336)
T KOG1515|consen 221 LNGS---------------PE----LARPKIDKWWRLLLPNGKTDLDHPFINPVGN------SLAKDLSGLGLPPTLVVV 275 (336)
T ss_pred hcCC---------------cc----hhHHHHHHHHHHhCCCCCCCcCCcccccccc------ccccCccccCCCceEEEE
Confidence 0000 00 0000000000 0001110 00000000000 00112223344 599999
Q ss_pred eCCCcccCchhHHHHHHHhcC--CCCcEEEecCCCccccccCCc-hhHHHHHHHHHHHHHHH
Q 020630 256 GTADGVTCPTSSKLLYEKASS--ADKSIKIYDGMYHSLIQGEPD-ENANLVLKDMREWIDER 314 (323)
Q Consensus 256 g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~~i~~fl~~~ 314 (323)
++.|.+. .....+++++.. -.+++..++++.|.+++-.+. ....++.+.+.+|+++.
T Consensus 276 ag~D~L~--D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 276 AGYDVLR--DEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred eCchhhh--hhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 9999886 444555566532 345666789999999987775 67788999999998763
No 111
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.63 E-value=7.5e-15 Score=128.17 Aligned_cols=230 Identities=13% Similarity=0.112 Sum_probs=132.2
Q ss_pred HHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhh--------------CCCCCCCEEEEEech
Q 020630 74 KICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHS--------------EPYRDLPAFLFGESM 139 (323)
Q Consensus 74 ~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~--------------~~~~~~~~~l~G~S~ 139 (323)
.+.++|+.+||.|+.+|.||.|.|.+.... -..+..+|..++|+++..+ .++...+|.++|.|+
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~--~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY 347 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPTT--GDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSY 347 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCcc--CCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcH
Confidence 355788999999999999999999886432 1245678999999999842 233467999999999
Q ss_pred hHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccc----ccc-CCCcc-cccccccC-hhhHH
Q 020630 140 GGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADT----WAA-MPDNK-MVGKAIKD-PEKLK 212 (323)
Q Consensus 140 Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~-~~~~~~~~-~~~~~ 212 (323)
||.+++.+|...|+. ++++|..++..+......... .......+... ... ..... ........ +....
T Consensus 348 ~G~~~~~aAa~~pp~-LkAIVp~a~is~~yd~yr~~G----~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~ 422 (767)
T PRK05371 348 LGTLPNAVATTGVEG-LETIIPEAAISSWYDYYRENG----LVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEK 422 (767)
T ss_pred HHHHHHHHHhhCCCc-ceEEEeeCCCCcHHHHhhcCC----ceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHH
Confidence 999999999988877 999999887654321110000 00000000000 000 00000 00000000 00000
Q ss_pred HhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhc--CCCCcEEEecCCCcc
Q 020630 213 VIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKAS--SADKSIKIYDGMYHS 290 (323)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~ 290 (323)
.... ......... .....+.... .+...+.++++|+|+++|..|..+++..+.++++.+. +...++.+.+ .+|.
T Consensus 423 ~~~~-~~~~~~~~~-~~y~~fW~~r-n~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~ 498 (767)
T PRK05371 423 LLAE-LTAAQDRKT-GDYNDFWDDR-NYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHV 498 (767)
T ss_pred HHhh-hhhhhhhcC-CCccHHHHhC-CHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCcc
Confidence 0000 000000000 0000011111 1234567899999999999999999988888888774 2345665555 5786
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhh
Q 020630 291 LIQGEPDENANLVLKDMREWIDERVER 317 (323)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~fl~~~~~~ 317 (323)
... ......+.+.+.+||++.+..
T Consensus 499 ~~~---~~~~~d~~e~~~~Wfd~~LkG 522 (767)
T PRK05371 499 YPN---NWQSIDFRDTMNAWFTHKLLG 522 (767)
T ss_pred CCC---chhHHHHHHHHHHHHHhcccc
Confidence 542 222456778888999888753
No 112
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.62 E-value=1.9e-13 Score=91.64 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=121.8
Q ss_pred CCceEEEEecCCCCCcc-hhhHHHHHHHhcCCcEEEEeccccCcCCC-----CCCCCCCChHHHHhhHHHHHHHHHhhCC
Q 020630 53 KVKATVYMTHGYGSDTG-WMFQKICISYATWGYAVFAADLLGHGRSD-----GIRCYLGDMEKVAASSLSFFKHVRHSEP 126 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~-----~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 126 (323)
....+||+.||.|.+.+ .....++..|+.+|+.|..++++..-... .++....-..++...+.++-..+.
T Consensus 12 ~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l~---- 87 (213)
T COG3571 12 PAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGLA---- 87 (213)
T ss_pred CCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhccc----
Confidence 34568899999987642 26778899999999999999987643222 222211122333344444433332
Q ss_pred CCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCccccccccc
Q 020630 127 YRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIK 206 (323)
Q Consensus 127 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
..++++-|+||||.++..++..-... |+++++++-++..+.....
T Consensus 88 --~gpLi~GGkSmGGR~aSmvade~~A~-i~~L~clgYPfhppGKPe~-------------------------------- 132 (213)
T COG3571 88 --EGPLIIGGKSMGGRVASMVADELQAP-IDGLVCLGYPFHPPGKPEQ-------------------------------- 132 (213)
T ss_pred --CCceeeccccccchHHHHHHHhhcCC-cceEEEecCccCCCCCccc--------------------------------
Confidence 44899999999999999998875555 9999988744332211100
Q ss_pred ChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecC
Q 020630 207 DPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDG 286 (323)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (323)
. -.+.+..+++|++|.+|+.|.+-..+.+ +...-++..+++++++
T Consensus 133 --------------~------------------Rt~HL~gl~tPtli~qGtrD~fGtr~~V---a~y~ls~~iev~wl~~ 177 (213)
T COG3571 133 --------------L------------------RTEHLTGLKTPTLITQGTRDEFGTRDEV---AGYALSDPIEVVWLED 177 (213)
T ss_pred --------------c------------------hhhhccCCCCCeEEeecccccccCHHHH---HhhhcCCceEEEEecc
Confidence 0 1356778899999999999998766554 2222236789999999
Q ss_pred CCccccccC------CchhHHHHHHHHHHHHHH
Q 020630 287 MYHSLIQGE------PDENANLVLKDMREWIDE 313 (323)
Q Consensus 287 ~gH~~~~~~------~~~~~~~~~~~i~~fl~~ 313 (323)
+.|.+--.. .++......+.|..|+.+
T Consensus 178 adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 178 ADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred CccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 999875111 123344456666667654
No 113
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=99.61 E-value=6.3e-14 Score=109.38 Aligned_cols=262 Identities=13% Similarity=0.136 Sum_probs=149.6
Q ss_pred EEecCCCCC-CceEEEEecCCCCCcchhh-----HHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHH-hhHHHH
Q 020630 45 QSFLPLDQK-VKATVYMTHGYGSDTGWMF-----QKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVA-ASSLSF 117 (323)
Q Consensus 45 ~~~~~~~~~-~~~~vv~~hG~~~~~~~~~-----~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~-~d~~~~ 117 (323)
..|.|..++ -+++++++|.+-.... .+ ..++..|.++|+.|+.+++++-..+... .++++++ +++...
T Consensus 96 iqy~p~~e~v~~~PlLiVpP~iNk~y-i~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~----~~~edYi~e~l~~a 170 (445)
T COG3243 96 IQYKPLTEKVLKRPLLIVPPWINKFY-ILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAA----KNLEDYILEGLSEA 170 (445)
T ss_pred hccCCCCCccCCCceEeeccccCcee-EEeCCCCccHHHHHHHcCCceEEEeccCchHhhhh----ccHHHHHHHHHHHH
Confidence 344454422 4678999999874321 22 4578889999999999999977666542 2677777 777777
Q ss_pred HHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhH-----HHHHHhhcc--ccccc
Q 020630 118 FKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSK-----LHLFMYGLL--FGLAD 190 (323)
Q Consensus 118 i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~ 190 (323)
++.+....+ .+++.++|+|.||.++..+++.++.++|++++++.+..++........ ....+...+ ....+
T Consensus 171 id~v~~itg--~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~~~g~lp 248 (445)
T COG3243 171 IDTVKDITG--QKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIVQKGILP 248 (445)
T ss_pred HHHHHHHhC--ccccceeeEecchHHHHHHHHhhhhcccccceeeecchhhccccccccccCHHHHHHHHhhhhhccCCC
Confidence 777766643 458999999999999999998887767999998887776554322111 011111000 00111
Q ss_pred ccc------cCCCc-----ccccccccC--hhhHHHh--hcCCcccCCCCCchhHHHHHHhhHHHH---------hcCCc
Q 020630 191 TWA------AMPDN-----KMVGKAIKD--PEKLKVI--ASNPRRYTGKPRVGTMREIARVCQYIQ---------DNFSK 246 (323)
Q Consensus 191 ~~~------~~~~~-----~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 246 (323)
.+. ..... .++...... +...++. ..+..............+++....... -.+.+
T Consensus 249 g~~ma~~F~mLrpndliw~~fV~nyl~ge~pl~fdllyWn~dst~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~~VdL~~ 328 (445)
T COG3243 249 GWYMAIVFFLLRPNDLIWNYFVNNYLDGEQPLPFDLLYWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGTMVDLGD 328 (445)
T ss_pred hHHHHHHHHhcCccccchHHHHHHhcCCCCCCchhHHHhhCCCccCchHHHHHHHHHHHHhChhhccceEECCEEechhh
Confidence 100 00000 011111110 0011111 111111111001111112222111111 24678
Q ss_pred ccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCc-hhHHHHHH----HHHHHHHHHH
Q 020630 247 VTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPD-ENANLVLK----DMREWIDERV 315 (323)
Q Consensus 247 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~-~~~~~~~~----~i~~fl~~~~ 315 (323)
|+||++.+.|++|.++|..........+++ +++++..+ +||...+-+|. ....+... ...+|+.+..
T Consensus 329 It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g-~~~f~l~~-sGHIa~vVN~p~~~k~~~w~n~~~~~~~Wl~~a~ 400 (445)
T COG3243 329 ITCPVYNLAAEEDHIAPWSSVYLGARLLGG-EVTFVLSR-SGHIAGVVNPPGNAKYQYWTNLPADAEAWLSGAK 400 (445)
T ss_pred cccceEEEeecccccCCHHHHHHHHHhcCC-ceEEEEec-CceEEEEeCCcchhhhhcCCCCcchHHHHHHhhc
Confidence 999999999999999999999988888854 45665555 79988765533 22223333 6677776543
No 114
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.60 E-value=1.1e-14 Score=109.51 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=72.8
Q ss_pred EEEecCCCCC---cchhhHHHHHHHhc-CCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhh---CCCCCC
Q 020630 58 VYMTHGYGSD---TGWMFQKICISYAT-WGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHS---EPYRDL 130 (323)
Q Consensus 58 vv~~hG~~~~---~~~~~~~~~~~l~~-~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~---~~~~~~ 130 (323)
||++||.+.. .. ....++..+++ .|+.|+++|||-..+ ..+.+..+|+.++++++..+ .+.+..
T Consensus 1 v~~~HGGg~~~g~~~-~~~~~~~~la~~~g~~v~~~~Yrl~p~--------~~~p~~~~D~~~a~~~l~~~~~~~~~d~~ 71 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKE-SHWPFAARLAAERGFVVVSIDYRLAPE--------APFPAALEDVKAAYRWLLKNADKLGIDPE 71 (211)
T ss_dssp EEEE--STTTSCGTT-THHHHHHHHHHHHTSEEEEEE---TTT--------SSTTHHHHHHHHHHHHHHHTHHHHTEEEE
T ss_pred CEEECCcccccCChH-HHHHHHHHHHhhccEEEEEeecccccc--------ccccccccccccceeeecccccccccccc
Confidence 7999998854 23 33455666664 799999999994322 25778888999988888776 234467
Q ss_pred CEEEEEechhHHHHHHHHhhcCC---CCeeEEEEccCccCC
Q 020630 131 PAFLFGESMGGAATMLMYFQSEP---NTWTGLIFSAPLFVI 168 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~---~~v~~~il~~~~~~~ 168 (323)
+++|+|+|.||.+++.++....+ ..++++++++|..++
T Consensus 72 ~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 72 RIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred ceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 99999999999999999875322 128999999998765
No 115
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.60 E-value=1.6e-14 Score=123.97 Aligned_cols=117 Identities=17% Similarity=0.095 Sum_probs=89.9
Q ss_pred eEEecCCC-cEEEEEecCCC------CCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCC-----
Q 020630 33 EYFETPNG-KLFTQSFLPLD------QKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGI----- 100 (323)
Q Consensus 33 ~~~~~~~g-~l~~~~~~~~~------~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~----- 100 (323)
..+..++| ++.|...+... ....|+||++||++++.. .|..+++.|+++||+|+++|+||||.|...
T Consensus 420 ~~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~-~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~ 498 (792)
T TIGR03502 420 VLLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKE-NALAFAGTLAAAGVATIAIDHPLHGARSFDANASG 498 (792)
T ss_pred eEEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHH-HHHHHHHHHHhCCcEEEEeCCCCCCcccccccccc
Confidence 45667778 77777644321 123579999999999887 889999999988999999999999999432
Q ss_pred -----CC---C---------CCChHHHHhhHHHHHHHHH------hh----CCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 101 -----RC---Y---------LGDMEKVAASSLSFFKHVR------HS----EPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 101 -----~~---~---------~~~~~~~~~d~~~~i~~l~------~~----~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
.. + ..++++.+.|+..+...++ .+ ...+..+++++||||||.++..++..
T Consensus 499 ~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 499 VNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred ccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 11 1 1267889999999999887 21 11336699999999999999999875
No 116
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.59 E-value=1.5e-13 Score=101.20 Aligned_cols=123 Identities=14% Similarity=0.083 Sum_probs=85.6
Q ss_pred EEEEEecCCCC--CCceEEEEecCCCCCcchhhHH--HHHHHh-cCCcEEEEeccccCcCCCC-C---CCCCCChHHHHh
Q 020630 42 LFTQSFLPLDQ--KVKATVYMTHGYGSDTGWMFQK--ICISYA-TWGYAVFAADLLGHGRSDG-I---RCYLGDMEKVAA 112 (323)
Q Consensus 42 l~~~~~~~~~~--~~~~~vv~~hG~~~~~~~~~~~--~~~~l~-~~g~~vi~~d~~G~G~s~~-~---~~~~~~~~~~~~ 112 (323)
|.|.+|.|++. .+.|.||++||.+.+.. .+.. -...|+ ++||.|+.++......... . ......-.....
T Consensus 1 l~Y~lYvP~~~~~~~~PLVv~LHG~~~~a~-~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~ 79 (220)
T PF10503_consen 1 LSYRLYVPPGAPRGPVPLVVVLHGCGQSAE-DFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVA 79 (220)
T ss_pred CcEEEecCCCCCCCCCCEEEEeCCCCCCHH-HHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchh
Confidence 56889998753 24699999999998765 3322 112344 4589999888542211110 0 000001112345
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
.|.++++++..++.+|..+|++.|+|.||.++..++..+|+. +.++.+.++..
T Consensus 80 ~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~-faa~a~~sG~~ 132 (220)
T PF10503_consen 80 FIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDL-FAAVAVVSGVP 132 (220)
T ss_pred hHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCcc-ceEEEeecccc
Confidence 677888888888889999999999999999999999999999 99988877654
No 117
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.55 E-value=5.7e-14 Score=98.21 Aligned_cols=212 Identities=14% Similarity=0.110 Sum_probs=133.7
Q ss_pred CCcEEEEEecCCCCCCceEEEEecCCCCC---cchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHH
Q 020630 39 NGKLFTQSFLPLDQKVKATVYMTHGYGSD---TGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSL 115 (323)
Q Consensus 39 ~g~l~~~~~~~~~~~~~~~vv~~hG~~~~---~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~ 115 (323)
+|.-...+|++. ...+..||+||.-.. .. .--.++..+.++||+|.++++ +.++.. .++++...++.
T Consensus 53 ~g~q~VDIwg~~--~~~klfIfIHGGYW~~g~rk-~clsiv~~a~~~gY~vasvgY---~l~~q~----htL~qt~~~~~ 122 (270)
T KOG4627|consen 53 GGRQLVDIWGST--NQAKLFIFIHGGYWQEGDRK-MCLSIVGPAVRRGYRVASVGY---NLCPQV----HTLEQTMTQFT 122 (270)
T ss_pred CCceEEEEecCC--CCccEEEEEecchhhcCchh-cccchhhhhhhcCeEEEEecc---CcCccc----ccHHHHHHHHH
Confidence 346677889985 458899999997532 22 223345556678999999875 344322 26777777777
Q ss_pred HHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccC
Q 020630 116 SFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAM 195 (323)
Q Consensus 116 ~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
..++++-...+ ....+.+-|||.|+.+|+.+..+..+.+|.++++.++.+.+....... ..
T Consensus 123 ~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te----------~g-------- 183 (270)
T KOG4627|consen 123 HGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTE----------SG-------- 183 (270)
T ss_pred HHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCc----------cc--------
Confidence 77776655443 134577889999999999988775444499999999877533211100 00
Q ss_pred CCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhc
Q 020630 196 PDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKAS 275 (323)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 275 (323)
..+.. ...... ........+..+++|+|++.|++|..--.+..+.+...+
T Consensus 184 ---~dlgL----------t~~~ae----------------~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~- 233 (270)
T KOG4627|consen 184 ---NDLGL----------TERNAE----------------SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQL- 233 (270)
T ss_pred ---cccCc----------ccchhh----------------hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHh-
Confidence 00000 000000 000012345678999999999999876678888888887
Q ss_pred CCCCcEEEecCCCccccccCCchhHHHHHHHHHHH
Q 020630 276 SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREW 310 (323)
Q Consensus 276 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~f 310 (323)
..+.+..+++.+|+-.+++..-....+...+++|
T Consensus 234 -~~a~~~~f~n~~hy~I~~~~~~~~s~~~~~~~~~ 267 (270)
T KOG4627|consen 234 -RKASFTLFKNYDHYDIIEETAIDDSDVSRFLRNI 267 (270)
T ss_pred -hhcceeecCCcchhhHHHHhccccchHHHHHHHH
Confidence 5689999999999998655432223333334333
No 118
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.2e-13 Score=115.27 Aligned_cols=228 Identities=15% Similarity=0.178 Sum_probs=145.8
Q ss_pred CC-cEEEEEecCCC---CCCceEEEEecCCCCCc----ch--hhHHHHHHHhcCCcEEEEeccccCcCCCCCC-----CC
Q 020630 39 NG-KLFTQSFLPLD---QKVKATVYMTHGYGSDT----GW--MFQKICISYATWGYAVFAADLLGHGRSDGIR-----CY 103 (323)
Q Consensus 39 ~g-~l~~~~~~~~~---~~~~~~vv~~hG~~~~~----~~--~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~ 103 (323)
+| ...+....|++ .+.-|.+|.+||.+++. .+ .|... .....|+.|+.+|.||-|.....- ..
T Consensus 506 ~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~--~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~ 583 (755)
T KOG2100|consen 506 DGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEV--VVSSRGFAVLQVDGRGSGGYGWDFRSALPRN 583 (755)
T ss_pred ccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHH--hhccCCeEEEEEcCCCcCCcchhHHHHhhhh
Confidence 88 88899888864 34568999999998632 11 23322 456779999999999987665221 10
Q ss_pred CCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhh
Q 020630 104 LGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYG 183 (323)
Q Consensus 104 ~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~ 183 (323)
.. ..-++|...+++.+....-+|..++.++|+|.||++++.++...++.-++..+.++|..++. ........+
T Consensus 584 lG--~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~~ter---- 656 (755)
T KOG2100|consen 584 LG--DVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDSTYTER---- 656 (755)
T ss_pred cC--CcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eecccccHh----
Confidence 00 01234555555555555455678999999999999999999998855256669999987643 111000000
Q ss_pred cccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccE-EEEeeCCCccc
Q 020630 184 LLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPF-LTVHGTADGVT 262 (323)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~-l~i~g~~D~~~ 262 (323)
+...+. .+ ....... .....+..++.|. |++||+.|..|
T Consensus 657 --------ymg~p~--------~~--~~~y~e~----------------------~~~~~~~~~~~~~~LliHGt~DdnV 696 (755)
T KOG2100|consen 657 --------YMGLPS--------EN--DKGYEES----------------------SVSSPANNIKTPKLLLIHGTEDDNV 696 (755)
T ss_pred --------hcCCCc--------cc--cchhhhc----------------------cccchhhhhccCCEEEEEcCCcCCc
Confidence 000000 00 0000000 0123334455555 99999999999
Q ss_pred CchhHHHHHHHhc--CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHhhc
Q 020630 263 CPTSSKLLYEKAS--SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVERC 318 (323)
Q Consensus 263 ~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~~ 318 (323)
+.+++..+.+.+. +-..++.++|+.+|.+.. .+....+...+..|+..++...
T Consensus 697 h~q~s~~~~~aL~~~gv~~~~~vypde~H~is~---~~~~~~~~~~~~~~~~~~~~~~ 751 (755)
T KOG2100|consen 697 HFQQSAILIKALQNAGVPFRLLVYPDENHGISY---VEVISHLYEKLDRFLRDCFGSP 751 (755)
T ss_pred CHHHHHHHHHHHHHCCCceEEEEeCCCCccccc---ccchHHHHHHHHHHHHHHcCcc
Confidence 9999999998884 233688999999999983 2334668889999999665443
No 119
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.51 E-value=6.3e-13 Score=109.10 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=108.0
Q ss_pred CccceeEEecCCC-cEEEEEecCCCCCCceEEEEec--CCCCCc--chhhHHHHH---HHhcCCcEEEEeccccCcCCCC
Q 020630 28 VRNGKEYFETPNG-KLFTQSFLPLDQKVKATVYMTH--GYGSDT--GWMFQKICI---SYATWGYAVFAADLLGHGRSDG 99 (323)
Q Consensus 28 ~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~h--G~~~~~--~~~~~~~~~---~l~~~g~~vi~~d~~G~G~s~~ 99 (323)
+......++..|| +|+..+|.|.+.++.|+++..+ .+.-.. .+.-....+ .++.+||.|+..|.||.|.|.+
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG 96 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAGAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEG 96 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCCCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCc
Confidence 5556788999999 9999999999878889999999 443321 101122333 5788999999999999999998
Q ss_pred CCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCC
Q 020630 100 IRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~ 168 (323)
......+ +-++|-.+.|+++..+ +....+|.++|.|++|...+.+|+..|.. +++++...+..+.
T Consensus 97 ~~~~~~~--~E~~Dg~D~I~Wia~Q-pWsNG~Vgm~G~SY~g~tq~~~Aa~~pPa-Lkai~p~~~~~D~ 161 (563)
T COG2936 97 VFDPESS--REAEDGYDTIEWLAKQ-PWSNGNVGMLGLSYLGFTQLAAAALQPPA-LKAIAPTEGLVDR 161 (563)
T ss_pred ccceecc--ccccchhHHHHHHHhC-CccCCeeeeecccHHHHHHHHHHhcCCch-heeeccccccccc
Confidence 7655434 4567888888888875 44577999999999999999999998887 9999988877663
No 120
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=99.51 E-value=5.9e-12 Score=97.24 Aligned_cols=236 Identities=10% Similarity=-0.031 Sum_probs=131.9
Q ss_pred CCceEEEEecCCCCCcchhhHHH-HHHHhcCCcEEEEeccccCcCCCCCCCCC---CCh-------HHHHhhHHHHHHHH
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKI-CISYATWGYAVFAADLLGHGRSDGIRCYL---GDM-------EKVAASSLSFFKHV 121 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~-~~~l~~~g~~vi~~d~~G~G~s~~~~~~~---~~~-------~~~~~d~~~~i~~l 121 (323)
+.+|++|.+.|.|.+.-|.-..+ +..|.++|+..+.+..|-||...+..... .+. ...+.+...+++++
T Consensus 90 ~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl 169 (348)
T PF09752_consen 90 PYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWL 169 (348)
T ss_pred CCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHH
Confidence 45899999999997654333344 88888889999999999999876432211 122 23346777888898
Q ss_pred HhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCC----chhHHHHHHhhcccccccccccCCC
Q 020630 122 RHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENM----KPSKLHLFMYGLLFGLADTWAAMPD 197 (323)
Q Consensus 122 ~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (323)
..+. ..++.+.|.||||.+|...|...|.. |..+-++++........ ...-.+..+...+.... ..
T Consensus 170 ~~~G---~~~~g~~G~SmGG~~A~laa~~~p~p-v~~vp~ls~~sAs~vFt~Gvls~~i~W~~L~~q~~~~~---~~--- 239 (348)
T PF09752_consen 170 EREG---YGPLGLTGISMGGHMAALAASNWPRP-VALVPCLSWSSASVVFTEGVLSNSINWDALEKQFEDTV---YE--- 239 (348)
T ss_pred HhcC---CCceEEEEechhHhhHHhhhhcCCCc-eeEEEeecccCCCcchhhhhhhcCCCHHHHHHHhcccc---hh---
Confidence 8883 55999999999999999999999986 76666665543211100 00001111111100000 00
Q ss_pred cccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCccc-----ccEEEEeeCCCcccCchhHHHHHH
Q 020630 198 NKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVT-----VPFLTVHGTADGVTCPTSSKLLYE 272 (323)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~P~l~i~g~~D~~~~~~~~~~~~~ 272 (323)
.................. . ..... .....+....-+....+.+.. -.+.++.+++|..||......+.+
T Consensus 240 -~~~~~~~~~~~~~~~~~~-~---~~~~~-~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~~Lq~ 313 (348)
T PF09752_consen 240 -EEISDIPAQNKSLPLDSM-E---ERRRD-REALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVLSLQE 313 (348)
T ss_pred -hhhcccccCcccccchhh-c---cccch-HHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcchHHH
Confidence 000000000000000000 0 00000 111111111111122233333 347899999999999999889999
Q ss_pred HhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHH
Q 020630 273 KASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREW 310 (323)
Q Consensus 273 ~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~f 310 (323)
.. |++++.++++ ||...+-.. .+.+.+.|.+=
T Consensus 314 ~W--PGsEvR~l~g-GHVsA~L~~---q~~fR~AI~Da 345 (348)
T PF09752_consen 314 IW--PGSEVRYLPG-GHVSAYLLH---QEAFRQAIYDA 345 (348)
T ss_pred hC--CCCeEEEecC-CcEEEeeec---hHHHHHHHHHH
Confidence 88 8899999997 998764222 23344555443
No 121
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.50 E-value=1.2e-12 Score=105.51 Aligned_cols=189 Identities=16% Similarity=0.221 Sum_probs=104.0
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCC------CC-----C-------C------CCCCC--
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRS------DG-----I-------R------CYLGD-- 106 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s------~~-----~-------~------~~~~~-- 106 (323)
..-|+|||-||++++.. .|..++..|+.+||-|+++|.|..-.. +. . . .....
T Consensus 98 ~~~PvvIFSHGlgg~R~-~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRT-SYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEE 176 (379)
T ss_dssp S-EEEEEEE--TT--TT-TTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGG
T ss_pred CCCCEEEEeCCCCcchh-hHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchh
Confidence 34799999999999987 899999999999999999999943111 00 0 0 00000
Q ss_pred --------hHHHHhhHHHHHHHHHhh--------------------CCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeE
Q 020630 107 --------MEKVAASSLSFFKHVRHS--------------------EPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTG 158 (323)
Q Consensus 107 --------~~~~~~d~~~~i~~l~~~--------------------~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~ 158 (323)
++.-++++..+++.+..- ...+..++.++|||+||..++.++.... + +++
T Consensus 177 ~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~-r-~~~ 254 (379)
T PF03403_consen 177 EFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDT-R-FKA 254 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-T-T---E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhcc-C-cce
Confidence 111234555566555421 0112457899999999999999888763 3 999
Q ss_pred EEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhH
Q 020630 159 LIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQ 238 (323)
Q Consensus 159 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (323)
.|+++++...-.
T Consensus 255 ~I~LD~W~~Pl~-------------------------------------------------------------------- 266 (379)
T PF03403_consen 255 GILLDPWMFPLG-------------------------------------------------------------------- 266 (379)
T ss_dssp EEEES---TTS---------------------------------------------------------------------
T ss_pred EEEeCCcccCCC--------------------------------------------------------------------
Confidence 999998742100
Q ss_pred HHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHh-cCCCCcEEEecCCCcccccc-------------------CCch
Q 020630 239 YIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKA-SSADKSIKIYDGMYHSLIQG-------------------EPDE 298 (323)
Q Consensus 239 ~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gH~~~~~-------------------~~~~ 298 (323)
.+....++.|+|+|+.+. +.-......+.+.. ..++..++.+.|+.|..+-+ +|..
T Consensus 267 --~~~~~~i~~P~L~InSe~--f~~~~~~~~~~~~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~ 342 (379)
T PF03403_consen 267 --DEIYSKIPQPLLFINSES--FQWWENIFRMKKVISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPER 342 (379)
T ss_dssp --GGGGGG--S-EEEEEETT--T--HHHHHHHHTT--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHH
T ss_pred --cccccCCCCCEEEEECcc--cCChhhHHHHHHHhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHH
Confidence 011245678999998774 22233333333322 22466888999999976521 3445
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 020630 299 NANLVLKDMREWIDERVE 316 (323)
Q Consensus 299 ~~~~~~~~i~~fl~~~~~ 316 (323)
..+...+.+.+||+++++
T Consensus 343 a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 343 ALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 567778889999999975
No 122
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.50 E-value=1.2e-12 Score=95.45 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=90.1
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~ 120 (323)
.....++.|...+.-|+|+|+||+.-... .|..+...++.+||-|+++++-..- . + +-.+.+++..++++|
T Consensus 32 PkpLlI~tP~~~G~yPVilF~HG~~l~ns-~Ys~lL~HIASHGfIVVAPQl~~~~--~-p-----~~~~Ei~~aa~V~~W 102 (307)
T PF07224_consen 32 PKPLLIVTPSEAGTYPVILFLHGFNLYNS-FYSQLLAHIASHGFIVVAPQLYTLF--P-P-----DGQDEIKSAASVINW 102 (307)
T ss_pred CCCeEEecCCcCCCccEEEEeechhhhhH-HHHHHHHHHhhcCeEEEechhhccc--C-C-----CchHHHHHHHHHHHH
Confidence 45566777777677899999999997766 7899999999999999999987421 1 1 233345566666666
Q ss_pred HHhhCC--------CCCCCEEEEEechhHHHHHHHHhhc-CCCCeeEEEEccCccCCC
Q 020630 121 VRHSEP--------YRDLPAFLFGESMGGAATMLMYFQS-EPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 121 l~~~~~--------~~~~~~~l~G~S~Gg~~a~~~a~~~-p~~~v~~~il~~~~~~~~ 169 (323)
+...-. .+..++.++|||.||-.|..+|..+ .+..+.++|.++|..+..
T Consensus 103 L~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~ 160 (307)
T PF07224_consen 103 LPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTS 160 (307)
T ss_pred HHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCC
Confidence 654311 2356899999999999999999887 444589999999987644
No 123
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.50 E-value=5.3e-13 Score=99.33 Aligned_cols=179 Identities=10% Similarity=0.046 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccc
Q 020630 112 ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADT 191 (323)
Q Consensus 112 ~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
+-+..++++|+.+..++..+|.|+|.|.||-+|+.+|..+|+ |+++|.++|............... ...+.
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~~--i~avVa~~ps~~~~~~~~~~~~~~-------~~lp~ 74 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFPQ--ISAVVAISPSSVVFQGIGFYRDSS-------KPLPY 74 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSS--EEEEEEES--SB--SSEEEETTE---------EE--
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCCC--ccEEEEeCCceeEecchhcccCCC-------ccCCc
Confidence 456778888888877777899999999999999999999995 999999988765433211100000 00000
Q ss_pred cccCCCcccccccccCh-hhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchh-HHH
Q 020630 192 WAAMPDNKMVGKAIKDP-EKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTS-SKL 269 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~-~~~ 269 (323)
...... ......... ............ ......-.+.++++|+|+|.|++|.+.|... ++.
T Consensus 75 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~ 137 (213)
T PF08840_consen 75 LPFDIS--KFSWNEPGLLRSRYAFELADDK---------------AVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQ 137 (213)
T ss_dssp --B-GG--G-EE-TTS-EE-TT-B--TTTG---------------GGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHH
T ss_pred CCcChh--hceecCCcceehhhhhhccccc---------------ccccccccHHHcCCCEEEEEeCCCCccchHHHHHH
Confidence 000000 000000000 000000000000 0000011356789999999999999988654 445
Q ss_pred HHHHhcC---C-CCcEEEecCCCccccccC-C-----------------------chhHHHHHHHHHHHHHHHHh
Q 020630 270 LYEKASS---A-DKSIKIYDGMYHSLIQGE-P-----------------------DENANLVLKDMREWIDERVE 316 (323)
Q Consensus 270 ~~~~~~~---~-~~~~~~~~~~gH~~~~~~-~-----------------------~~~~~~~~~~i~~fl~~~~~ 316 (323)
+.+++.. + +.++..|+++||.+..-- | ....+..++.+.+||++++.
T Consensus 138 i~~rL~~~~~~~~~~~l~Y~~aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 138 IEERLKAAGFPHNVEHLSYPGAGHLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp HHHHHHCTT-----EEEEETTB-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhCCCCcceEEEcCCCCceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555521 2 468889999999875210 0 01456688899999999875
No 124
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=99.49 E-value=3.6e-12 Score=87.55 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=114.4
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
+.+|++||++++....|+...+.- . -++-.+++. .-.....+++++.+.+.+... .++++||
T Consensus 3 ~~~lIVpG~~~Sg~~HWq~~we~~--l-~~a~rveq~--------~w~~P~~~dWi~~l~~~v~a~-------~~~~vlV 64 (181)
T COG3545 3 TDVLIVPGYGGSGPNHWQSRWESA--L-PNARRVEQD--------DWEAPVLDDWIARLEKEVNAA-------EGPVVLV 64 (181)
T ss_pred ceEEEecCCCCCChhHHHHHHHhh--C-ccchhcccC--------CCCCCCHHHHHHHHHHHHhcc-------CCCeEEE
Confidence 578999999988654666544321 1 112222222 111126777777777776665 2369999
Q ss_pred EechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhh
Q 020630 136 GESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIA 215 (323)
Q Consensus 136 G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (323)
+||+|+.+++.++.+.... |.|+++++|+.--.+...... ..
T Consensus 65 AHSLGc~~v~h~~~~~~~~-V~GalLVAppd~~~~~~~~~~------------------------------------~~- 106 (181)
T COG3545 65 AHSLGCATVAHWAEHIQRQ-VAGALLVAPPDVSRPEIRPKH------------------------------------LM- 106 (181)
T ss_pred EecccHHHHHHHHHhhhhc-cceEEEecCCCccccccchhh------------------------------------cc-
Confidence 9999999999999986666 999999998753221110000 00
Q ss_pred cCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccC
Q 020630 216 SNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGE 295 (323)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 295 (323)
.+. .....++.-|.+++...+|++++++.++.+++.+ +..++...++||... +.
T Consensus 107 ----tf~------------------~~p~~~lpfps~vvaSrnDp~~~~~~a~~~a~~w---gs~lv~~g~~GHiN~-~s 160 (181)
T COG3545 107 ----TFD------------------PIPREPLPFPSVVVASRNDPYVSYEHAEDLANAW---GSALVDVGEGGHINA-ES 160 (181)
T ss_pred ----ccC------------------CCccccCCCceeEEEecCCCCCCHHHHHHHHHhc---cHhheecccccccch-hh
Confidence 000 0112344679999999999999999999999998 367888888899876 32
Q ss_pred CchhHHHHHHHHHHHHHH
Q 020630 296 PDENANLVLKDMREWIDE 313 (323)
Q Consensus 296 ~~~~~~~~~~~i~~fl~~ 313 (323)
.-....+....+.+|+.+
T Consensus 161 G~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 161 GFGPWPEGYALLAQLLSR 178 (181)
T ss_pred cCCCcHHHHHHHHHHhhh
Confidence 233345566666666543
No 125
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.6e-12 Score=103.58 Aligned_cols=234 Identities=16% Similarity=0.129 Sum_probs=143.1
Q ss_pred ceeEEecCCC-cEEEEEecCCC---CCCceEEEEecCCCCCc----chhhHH--HHHHHhcCCcEEEEeccccCcCCCCC
Q 020630 31 GKEYFETPNG-KLFTQSFLPLD---QKVKATVYMTHGYGSDT----GWMFQK--ICISYATWGYAVFAADLLGHGRSDGI 100 (323)
Q Consensus 31 ~~~~~~~~~g-~l~~~~~~~~~---~~~~~~vv~~hG~~~~~----~~~~~~--~~~~l~~~g~~vi~~d~~G~G~s~~~ 100 (323)
+...+.+..| .++..+|.|.+ +++-|+|+++-|.++-. .|.+.. -...|+..||.|+.+|-||.-.....
T Consensus 614 eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlk 693 (867)
T KOG2281|consen 614 EIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLK 693 (867)
T ss_pred hheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchh
Confidence 4466777777 88888998865 34569999999987521 222211 13467889999999999986444311
Q ss_pred -------CCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCc
Q 020630 101 -------RCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMK 173 (323)
Q Consensus 101 -------~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~ 173 (323)
.-....+++.++.+.-+++..+ -++-.+|.+-|||+||++++....++|+- ++..|.-+|....... .
T Consensus 694 FE~~ik~kmGqVE~eDQVeglq~Laeq~g---fidmdrV~vhGWSYGGYLSlm~L~~~P~I-frvAIAGapVT~W~~Y-D 768 (867)
T KOG2281|consen 694 FESHIKKKMGQVEVEDQVEGLQMLAEQTG---FIDMDRVGVHGWSYGGYLSLMGLAQYPNI-FRVAIAGAPVTDWRLY-D 768 (867)
T ss_pred hHHHHhhccCeeeehhhHHHHHHHHHhcC---cccchheeEeccccccHHHHHHhhcCcce-eeEEeccCcceeeeee-c
Confidence 0011134555555444444432 14567999999999999999999999996 6666666665432100 0
Q ss_pred hhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEE
Q 020630 174 PSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLT 253 (323)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 253 (323)
.. .. .+.+.-+. .+...+. ..... ...+.+..-....|+
T Consensus 769 Tg--------------------YT----ERYMg~P~------~nE~gY~----agSV~-------~~VeklpdepnRLlL 807 (867)
T KOG2281|consen 769 TG--------------------YT----ERYMGYPD------NNEHGYG----AGSVA-------GHVEKLPDEPNRLLL 807 (867)
T ss_pred cc--------------------ch----hhhcCCCc------cchhccc----chhHH-------HHHhhCCCCCceEEE
Confidence 00 00 00000000 0000000 00000 012334444567899
Q ss_pred EeeCCCcccCchhHHHHHHHh--cCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 254 VHGTADGVTCPTSSKLLYEKA--SSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 254 i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+||--|.-|.......+...+ +++.-++.++|+.-|.+-- .+...-.-..+..|+++
T Consensus 808 vHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~---~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 808 VHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRN---PESGIYYEARLLHFLQE 866 (867)
T ss_pred EecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCC---CccchhHHHHHHHHHhh
Confidence 999999999988877777766 3455799999999998863 33345566778888875
No 126
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.47 E-value=5.5e-12 Score=95.25 Aligned_cols=208 Identities=19% Similarity=0.174 Sum_probs=121.7
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHh-cCCc--EE--EEeccccC----cCCC----CC------CCCC-CChHHHHhh
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYA-TWGY--AV--FAADLLGH----GRSD----GI------RCYL-GDMEKVAAS 113 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~-~~g~--~v--i~~d~~G~----G~s~----~~------~~~~-~~~~~~~~d 113 (323)
...|.||+||++++.. .+..++..+. ++|. .+ +.++--|. |.=. .+ .... .+....++.
T Consensus 10 ~~tPTifihG~~gt~~-s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~w 88 (255)
T PF06028_consen 10 STTPTIFIHGYGGTAN-SFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKW 88 (255)
T ss_dssp S-EEEEEE--TTGGCC-CCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHH
T ss_pred CCCcEEEECCCCCChh-HHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHH
Confidence 3568999999999876 8899999997 6554 23 33333332 2111 11 0111 267889999
Q ss_pred HHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC---C-CeeEEEEccCccCCCCCCchhHHHHHHhhcccccc
Q 020630 114 SLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP---N-TWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLA 189 (323)
Q Consensus 114 ~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~-~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (323)
+..++.+|..++. -.++.+|||||||..++.++..+.. . .+.++|.+++++..........
T Consensus 89 l~~vl~~L~~~Y~--~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~------------- 153 (255)
T PF06028_consen 89 LKKVLKYLKKKYH--FKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQ------------- 153 (255)
T ss_dssp HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-T-------------
T ss_pred HHHHHHHHHHhcC--CCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccc-------------
Confidence 9999999999987 6689999999999999999887422 1 2899999988765332211000
Q ss_pred cccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHH-HhcCCcccccEEEEeeC------CCccc
Q 020630 190 DTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYI-QDNFSKVTVPFLTVHGT------ADGVT 262 (323)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~l~i~g~------~D~~~ 262 (323)
.. ..+... + .......+...... ...+. -++.+|-|.|. .|..|
T Consensus 154 -~~-----~~~~~~-------------------g---p~~~~~~y~~l~~~~~~~~p-~~i~VLnI~G~~~~g~~sDG~V 204 (255)
T PF06028_consen 154 -NQ-----NDLNKN-------------------G---PKSMTPMYQDLLKNRRKNFP-KNIQVLNIYGDLEDGSNSDGIV 204 (255)
T ss_dssp -TT-----T-CSTT-----------------------BSS--HHHHHHHHTHGGGST-TT-EEEEEEEESBTTCSBTSSS
T ss_pred -hh-----hhhccc-------------------C---CcccCHHHHHHHHHHHhhCC-CCeEEEEEecccCCCCCCCeEE
Confidence 00 000000 0 00011111111111 11121 26789999998 78999
Q ss_pred CchhHHHHHHHhcC--CCCcEEEecC--CCccccccCCchhHHHHHHHHHHHH
Q 020630 263 CPTSSKLLYEKASS--ADKSIKIYDG--MYHSLIQGEPDENANLVLKDMREWI 311 (323)
Q Consensus 263 ~~~~~~~~~~~~~~--~~~~~~~~~~--~gH~~~~~~~~~~~~~~~~~i~~fl 311 (323)
|...+..+...+.. ...+-.++.| +.|.-..++ .++.+.|.+||
T Consensus 205 ~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN-----~~V~~~I~~FL 252 (255)
T PF06028_consen 205 PNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHEN-----PQVDKLIIQFL 252 (255)
T ss_dssp BHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCC-----HHHHHHHHHHH
T ss_pred eHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCC-----HHHHHHHHHHh
Confidence 99988888777743 2334555654 679888443 34788888887
No 127
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.47 E-value=3.1e-12 Score=97.93 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=94.4
Q ss_pred ecCCC-cEEEEEecCCCC---CCceEEEEecCCCCCcchhhHHHHHHHhcC---------CcEEEEeccccCcCCCCCCC
Q 020630 36 ETPNG-KLFTQSFLPLDQ---KVKATVYMTHGYGSDTGWMFQKICISYATW---------GYAVFAADLLGHGRSDGIRC 102 (323)
Q Consensus 36 ~~~~g-~l~~~~~~~~~~---~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~---------g~~vi~~d~~G~G~s~~~~~ 102 (323)
+...| +||+....|+.. +.-.+++++|||+++-. .+-.+++.|.+. -|.||++.+||+|.|+.+..
T Consensus 129 TeIeGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~-EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk 207 (469)
T KOG2565|consen 129 TEIEGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVR-EFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSK 207 (469)
T ss_pred hhhcceeEEEEEecCCccccCCcccceEEecCCCchHH-HHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCcc
Confidence 45678 999998887642 22358999999999865 566677777654 27899999999999998766
Q ss_pred CCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEcc
Q 020630 103 YLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSA 163 (323)
Q Consensus 103 ~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~ 163 (323)
...+..+.+.-+..++-.++-+ ++.|-|-.+|+.|+..+|..+|+. |.|+-+-.
T Consensus 208 ~GFn~~a~ArvmrkLMlRLg~n------kffiqGgDwGSiI~snlasLyPen-V~GlHlnm 261 (469)
T KOG2565|consen 208 TGFNAAATARVMRKLMLRLGYN------KFFIQGGDWGSIIGSNLASLYPEN-VLGLHLNM 261 (469)
T ss_pred CCccHHHHHHHHHHHHHHhCcc------eeEeecCchHHHHHHHHHhhcchh-hhHhhhcc
Confidence 5556666666677777666644 899999999999999999999998 88876543
No 128
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=99.47 E-value=2e-12 Score=100.14 Aligned_cols=228 Identities=19% Similarity=0.180 Sum_probs=132.9
Q ss_pred cEEEEEecCCCC------CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccC--cCCCCCCCCC--C---Ch
Q 020630 41 KLFTQSFLPLDQ------KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGH--GRSDGIRCYL--G---DM 107 (323)
Q Consensus 41 ~l~~~~~~~~~~------~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~--G~s~~~~~~~--~---~~ 107 (323)
++....+.+... ...|+|++-||.|+... .+..+++.+++.||.|.++|.+|- |..+...... + .+
T Consensus 51 ~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~~~-~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~ 129 (365)
T COG4188 51 ERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSYVT-GFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEW 129 (365)
T ss_pred ccccceeccCCCccccccCcCCeEEecCCCCCCcc-chhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhh
Confidence 677777776552 24699999999998866 888999999999999999999984 3333211110 1 23
Q ss_pred HHHHhhHHHHHHHHHhh---C----CCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccC---ccCCCCCCchhHH
Q 020630 108 EKVAASSLSFFKHVRHS---E----PYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAP---LFVIPENMKPSKL 177 (323)
Q Consensus 108 ~~~~~d~~~~i~~l~~~---~----~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~---~~~~~~~~~~~~~ 177 (323)
.+-..|+..+|+++... . ..+..+|.++|||+||+.++.++....+. ..+.-.|. ............
T Consensus 130 ~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~~--~~~~~~C~~~~~~~~~~~~~~~~- 206 (365)
T COG4188 130 WERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELDA--EALLQHCESASRICLDPPGLNGR- 206 (365)
T ss_pred hcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccccH--HHHHHHhhhhhhcccCCCCcChh-
Confidence 34557788888877665 2 14567999999999999999988765442 11110000 000000000000
Q ss_pred HHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeC
Q 020630 178 HLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGT 257 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~ 257 (323)
.+. .....+. ......++++..+..+..++..-... -...+.+++.|++++.|.
T Consensus 207 --~l~----q~~av~~-----~~~~~~~rDpriravvA~~p~~~~~F---------------g~tgl~~v~~P~~~~a~s 260 (365)
T COG4188 207 --LLN----QCAAVWL-----PRQAYDLRDPRIRAVVAINPALGMIF---------------GTTGLVKVTDPVLLAAGS 260 (365)
T ss_pred --hhc----ccccccc-----chhhhccccccceeeeeccCCccccc---------------ccccceeeecceeeeccc
Confidence 000 0000000 01111112222111111111110000 135678899999999999
Q ss_pred CCcccCchh-HHHHHHHhcCCCCcEEEecCCCccccccCCch
Q 020630 258 ADGVTCPTS-SKLLYEKASSADKSIKIYDGMYHSLIQGEPDE 298 (323)
Q Consensus 258 ~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 298 (323)
.|.+.|... ....+..+.++...+..++++.|+.+++-..+
T Consensus 261 ~D~~aP~~~~~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~ 302 (365)
T COG4188 261 ADGFAPPVTEQIRPFGYLPGALKYLRLVPGATHFSFLELCKE 302 (365)
T ss_pred ccccCCcccccccccccCCcchhheeecCCCccccccccCcc
Confidence 999877543 45556666555557889999999999766654
No 129
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=99.46 E-value=8.9e-12 Score=88.94 Aligned_cols=180 Identities=15% Similarity=0.143 Sum_probs=112.3
Q ss_pred CceEEEEecCCCCCcchhhH----HHHHHHhcCCcEEEEecccc----CcCCC--C------CC------C--------C
Q 020630 54 VKATVYMTHGYGSDTGWMFQ----KICISYATWGYAVFAADLLG----HGRSD--G------IR------C--------Y 103 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~----~~~~~l~~~g~~vi~~d~~G----~G~s~--~------~~------~--------~ 103 (323)
.++-|||+||+-.+.. .+. .+.+.+.+. +.++.+|-|- -+.+. . +. . .
T Consensus 4 ~k~rvLcLHGfrQsg~-~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~ 81 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSGK-VFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEAS 81 (230)
T ss_pred CCceEEEecchhhccH-HHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccccc
Confidence 3678999999987755 332 345555555 7777777662 01111 0 00 0 0
Q ss_pred CCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh---------cCCCCeeEEEEccCccCCCCCCch
Q 020630 104 LGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ---------SEPNTWTGLIFSAPLFVIPENMKP 174 (323)
Q Consensus 104 ~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~---------~p~~~v~~~il~~~~~~~~~~~~~ 174 (323)
.......-+-+..+.+++..+.|. -.|+|+|.|+.++..++.. +|. ++-+|+++++........
T Consensus 82 ~~~~~~~eesl~yl~~~i~enGPF----DGllGFSQGA~laa~l~~~~~~~~~~~~~P~--~kF~v~~SGf~~~~~~~~- 154 (230)
T KOG2551|consen 82 FTEYFGFEESLEYLEDYIKENGPF----DGLLGFSQGAALAALLAGLGQKGLPYVKQPP--FKFAVFISGFKFPSKKLD- 154 (230)
T ss_pred cccccChHHHHHHHHHHHHHhCCC----ccccccchhHHHHHHhhcccccCCcccCCCC--eEEEEEEecCCCCcchhh-
Confidence 001111223355555666665432 2599999999999998872 233 677888886543210000
Q ss_pred hHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEE
Q 020630 175 SKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTV 254 (323)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i 254 (323)
-......+++|+|.|
T Consensus 155 -----------------------------------------------------------------~~~~~~~i~~PSLHi 169 (230)
T KOG2551|consen 155 -----------------------------------------------------------------ESAYKRPLSTPSLHI 169 (230)
T ss_pred -----------------------------------------------------------------hhhhccCCCCCeeEE
Confidence 012235779999999
Q ss_pred eeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHh
Q 020630 255 HGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVE 316 (323)
Q Consensus 255 ~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~ 316 (323)
.|+.|.++|.+.+..+++.+ ++..+..-+ +||...-.. ...+.|.+||.....
T Consensus 170 ~G~~D~iv~~~~s~~L~~~~--~~a~vl~Hp-ggH~VP~~~------~~~~~i~~fi~~~~~ 222 (230)
T KOG2551|consen 170 FGETDTIVPSERSEQLAESF--KDATVLEHP-GGHIVPNKA------KYKEKIADFIQSFLQ 222 (230)
T ss_pred ecccceeecchHHHHHHHhc--CCCeEEecC-CCccCCCch------HHHHHHHHHHHHHHH
Confidence 99999999999999999999 566555555 589998333 366667777766553
No 130
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=99.43 E-value=3.1e-12 Score=90.08 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=81.5
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
..+||+-|=|+=.. .-..+++.|+++|+.|+.+|-+-+=.+.+ +.++.+.|+..+|+....+.. ..+++|+
T Consensus 3 t~~v~~SGDgGw~~-~d~~~a~~l~~~G~~VvGvdsl~Yfw~~r------tP~~~a~Dl~~~i~~y~~~w~--~~~vvLi 73 (192)
T PF06057_consen 3 TLAVFFSGDGGWRD-LDKQIAEALAKQGVPVVGVDSLRYFWSER------TPEQTAADLARIIRHYRARWG--RKRVVLI 73 (192)
T ss_pred EEEEEEeCCCCchh-hhHHHHHHHHHCCCeEEEechHHHHhhhC------CHHHHHHHHHHHHHHHHHHhC--CceEEEE
Confidence 46788888665544 55779999999999999999775554432 688999999999999988866 7799999
Q ss_pred EechhHHHHHHHHhhcCCC---CeeEEEEccCccC
Q 020630 136 GESMGGAATMLMYFQSEPN---TWTGLIFSAPLFV 167 (323)
Q Consensus 136 G~S~Gg~~a~~~a~~~p~~---~v~~~il~~~~~~ 167 (323)
|+|+|+-+.-....+.|.. +|+.++|++|...
T Consensus 74 GYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~ 108 (192)
T PF06057_consen 74 GYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTT 108 (192)
T ss_pred eecCCchhHHHHHhhCCHHHHhheeEEEEeccCCc
Confidence 9999998877777665531 2999999987653
No 131
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.43 E-value=5.9e-12 Score=93.50 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=78.4
Q ss_pred cCCC-cEEEEEecCCC---CCCc-eEEEEecCCCCCcchhhHHHHH-------HHhcCCcEEEEecccc-CcCCCCCCCC
Q 020630 37 TPNG-KLFTQSFLPLD---QKVK-ATVYMTHGYGSDTGWMFQKICI-------SYATWGYAVFAADLLG-HGRSDGIRCY 103 (323)
Q Consensus 37 ~~~g-~l~~~~~~~~~---~~~~-~~vv~~hG~~~~~~~~~~~~~~-------~l~~~g~~vi~~d~~G-~G~s~~~~~~ 103 (323)
...| +|.|+.|.|.+ ++.- |.|||+||.|.........+.. ..-+.++-|+++.+-- +-.++.
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d~e~---- 243 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFADSEE---- 243 (387)
T ss_pred cccCceeeEEEecccccCCCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccccccccccc----
Confidence 3556 99999999964 2233 9999999998765422222211 1111223344443211 111111
Q ss_pred CCChHHHHhhHHHHH-HHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 104 LGDMEKVAASSLSFF-KHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 104 ~~~~~~~~~d~~~~i-~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
..+.......+++ +.+...+.+|..+++++|.|+||.-++.++.++|+. +.+.+++++..
T Consensus 244 --~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdf-FAaa~~iaG~~ 304 (387)
T COG4099 244 --KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDF-FAAAVPIAGGG 304 (387)
T ss_pred --ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchh-hheeeeecCCC
Confidence 1122223333344 377777888899999999999999999999999999 99999998654
No 132
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.43 E-value=6.2e-12 Score=98.05 Aligned_cols=232 Identities=21% Similarity=0.226 Sum_probs=119.9
Q ss_pred HHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCC---C-CCCCEEEEEechhHHHHHHHHh
Q 020630 74 KICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEP---Y-RDLPAFLFGESMGGAATMLMYF 149 (323)
Q Consensus 74 ~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~---~-~~~~~~l~G~S~Gg~~a~~~a~ 149 (323)
.++..+.++||.|+++|+.|.|.. +. .-...+..+.+.++..+.-.+ . ...++.++|||.||..++..+.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg~~-----y~-~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLGTP-----YL-NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCCCc-----cc-CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 345566678999999999999871 11 223334444444444443221 1 2458999999999999877664
Q ss_pred h----cCCCC--eeEEEEccCccCCCCCCchh---HHHHHHhhcccccccccccCCCcccccccccChh-----------
Q 020630 150 Q----SEPNT--WTGLIFSAPLFVIPENMKPS---KLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPE----------- 209 (323)
Q Consensus 150 ~----~p~~~--v~~~il~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 209 (323)
. -|+.+ +.+.++.+++.++....... .........+..+....+... ..+...+....
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~--~~~~~~l~~~g~~~~~~~~~~c 168 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELD--ELLDSYLTPEGRALLDDARTRC 168 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHH--HHHHHHhhHHHHHHHHHHHhhh
Confidence 4 36655 77888877765532211100 000000011111111111000 00111110000
Q ss_pred hHHHhhcCC-ccc--------CCCCCchhHHHHHHhhHHHHh---cCCcccccEEEEeeCCCcccCchhHHHHHHHhc--
Q 020630 210 KLKVIASNP-RRY--------TGKPRVGTMREIARVCQYIQD---NFSKVTVPFLTVHGTADGVTCPTSSKLLYEKAS-- 275 (323)
Q Consensus 210 ~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-- 275 (323)
......... ... ...........+.....+..- .-...+.|+++.+|..|.++|......+.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~ 248 (290)
T PF03583_consen 169 LADIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAA 248 (290)
T ss_pred HHHHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHc
Confidence 000000000 000 000000000111122211111 112347999999999999999999998888873
Q ss_pred C-CCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHhhcCC
Q 020630 276 S-ADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVERCGP 320 (323)
Q Consensus 276 ~-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~~~~ 320 (323)
+ .++++..+++.+|...... -.....+||..++.....
T Consensus 249 G~a~V~~~~~~~~~H~~~~~~-------~~~~a~~Wl~~rf~G~~~ 287 (290)
T PF03583_consen 249 GGADVEYVRYPGGGHLGAAFA-------SAPDALAWLDDRFAGKPA 287 (290)
T ss_pred CCCCEEEEecCCCChhhhhhc-------CcHHHHHHHHHHHCCCCC
Confidence 4 4678888889999876211 236677999999976544
No 133
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=99.43 E-value=6.3e-11 Score=98.35 Aligned_cols=136 Identities=21% Similarity=0.228 Sum_probs=93.4
Q ss_pred ceeEEecCC---C-cEEEEEecCCC-CCCceEEEEecCCCCCcchhhHHHHH------------------HHhcCCcEEE
Q 020630 31 GKEYFETPN---G-KLFTQSFLPLD-QKVKATVYMTHGYGSDTGWMFQKICI------------------SYATWGYAVF 87 (323)
Q Consensus 31 ~~~~~~~~~---g-~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~~~~~~~~------------------~l~~~g~~vi 87 (323)
...++...+ + .++|+.+.... ....|+||+++|.++.+. .+..+.+ .+.+. .+++
T Consensus 48 ~sGy~~v~~~~~~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss-~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l 125 (462)
T PTZ00472 48 WSGYFDIPGNQTDKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSS-MFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVI 125 (462)
T ss_pred eeEEEEeCCCCCCceEEEEEEEcCCCCCCCCEEEEECCCCcHHH-HHhhhccCCCeEEeCCCCceeECCcccccc-cCeE
Confidence 445555532 5 89999887543 345799999999987765 3322211 12222 6899
Q ss_pred Eeccc-cCcCCCCCCC-CCCChHHHHhhHHHHHHHHHhhCC-CCCCCEEEEEechhHHHHHHHHhhc---------CCCC
Q 020630 88 AADLL-GHGRSDGIRC-YLGDMEKVAASSLSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQS---------EPNT 155 (323)
Q Consensus 88 ~~d~~-G~G~s~~~~~-~~~~~~~~~~d~~~~i~~l~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~---------p~~~ 155 (323)
.+|.| |+|.|..... ...+.++.++|+..+++.+-.+.+ ....+++|+|||+||..+..+|..- ...+
T Consensus 126 ~iDqP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~in 205 (462)
T PTZ00472 126 YVDQPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYIN 205 (462)
T ss_pred EEeCCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceee
Confidence 99975 8888875432 223568889999999997765544 2356899999999999988877652 1123
Q ss_pred eeEEEEccCccCC
Q 020630 156 WTGLIFSAPLFVI 168 (323)
Q Consensus 156 v~~~il~~~~~~~ 168 (323)
++++++.++..+.
T Consensus 206 LkGi~IGNg~~dp 218 (462)
T PTZ00472 206 LAGLAVGNGLTDP 218 (462)
T ss_pred eEEEEEeccccCh
Confidence 8999998887653
No 134
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=99.36 E-value=6.6e-12 Score=93.74 Aligned_cols=166 Identities=19% Similarity=0.205 Sum_probs=83.4
Q ss_pred CceEEEEecCCCCCcchhhH----HHHHHHhcCCcEEEEeccccC-----cCCC------------CC-CCC------CC
Q 020630 54 VKATVYMTHGYGSDTGWMFQ----KICISYATWGYAVFAADLLGH-----GRSD------------GI-RCY------LG 105 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~----~~~~~l~~~g~~vi~~d~~G~-----G~s~------------~~-~~~------~~ 105 (323)
.++.||++||++.+.. .++ .+.+.|.+.++.++.+|-|-- |-.. .+ ..+ ..
T Consensus 3 ~k~riLcLHG~~~na~-if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 81 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAE-IFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDH 81 (212)
T ss_dssp ---EEEEE--TT--HH-HHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SG
T ss_pred CCceEEEeCCCCcCHH-HHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCcc
Confidence 3789999999999876 454 455566553688888875421 1110 00 000 00
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc----C---CCCeeEEEEccCccCCCCCCchhHHH
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS----E---PNTWTGLIFSAPLFVIPENMKPSKLH 178 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~----p---~~~v~~~il~~~~~~~~~~~~~~~~~ 178 (323)
....+.+.+..+.+.+....+ =..|+|+|.||.+|..++... + ...++-+|+++++......
T Consensus 82 ~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------- 150 (212)
T PF03959_consen 82 EYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------- 150 (212)
T ss_dssp GG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE--------
T ss_pred cccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh-------
Confidence 123333444444455554432 256999999999999888542 1 1127888888876531100
Q ss_pred HHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCC
Q 020630 179 LFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTA 258 (323)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~ 258 (323)
... .. .-.++++|+|.|+|++
T Consensus 151 ----------------------~~~------------------------------------~~-~~~~i~iPtlHv~G~~ 171 (212)
T PF03959_consen 151 ----------------------YQE------------------------------------LY-DEPKISIPTLHVIGEN 171 (212)
T ss_dssp ----------------------GTT------------------------------------TT---TT---EEEEEEETT
T ss_pred ----------------------hhh------------------------------------hh-ccccCCCCeEEEEeCC
Confidence 000 00 1245689999999999
Q ss_pred CcccCchhHHHHHHHhcCCCCcEEEecCCCcccc
Q 020630 259 DGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLI 292 (323)
Q Consensus 259 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~ 292 (323)
|.+++++.++.+.+.+... .+++..+ +||.+.
T Consensus 172 D~~~~~~~s~~L~~~~~~~-~~v~~h~-gGH~vP 203 (212)
T PF03959_consen 172 DPVVPPERSEALAEMFDPD-ARVIEHD-GGHHVP 203 (212)
T ss_dssp -SSS-HHHHHHHHHHHHHH-EEEEEES-SSSS--
T ss_pred CCCcchHHHHHHHHhccCC-cEEEEEC-CCCcCc
Confidence 9999999999999998322 6666666 588886
No 135
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.35 E-value=8.1e-11 Score=111.82 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=83.4
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
+++++++||++++.. .|..+.+.|.. ++.|++++++|+|.+.. ..++++++++++.+.++.+.. ..++++
T Consensus 1068 ~~~l~~lh~~~g~~~-~~~~l~~~l~~-~~~v~~~~~~g~~~~~~---~~~~l~~la~~~~~~i~~~~~-----~~p~~l 1137 (1296)
T PRK10252 1068 GPTLFCFHPASGFAW-QFSVLSRYLDP-QWSIYGIQSPRPDGPMQ---TATSLDEVCEAHLATLLEQQP-----HGPYHL 1137 (1296)
T ss_pred CCCeEEecCCCCchH-HHHHHHHhcCC-CCcEEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHhhCC-----CCCEEE
Confidence 578999999998866 89999998876 49999999999986532 234899999999998887643 237999
Q ss_pred EEechhHHHHHHHHhh---cCCCCeeEEEEccCcc
Q 020630 135 FGESMGGAATMLMYFQ---SEPNTWTGLIFSAPLF 166 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a~~---~p~~~v~~~il~~~~~ 166 (323)
+||||||.+|..+|.+ .+.+ +..++++++..
T Consensus 1138 ~G~S~Gg~vA~e~A~~l~~~~~~-v~~l~l~~~~~ 1171 (1296)
T PRK10252 1138 LGYSLGGTLAQGIAARLRARGEE-VAFLGLLDTWP 1171 (1296)
T ss_pred EEechhhHHHHHHHHHHHHcCCc-eeEEEEecCCC
Confidence 9999999999999986 4666 99999988643
No 136
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.35 E-value=4e-11 Score=89.79 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=73.3
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHh--------cCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhC
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYA--------TWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSE 125 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~--------~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~ 125 (323)
.+.+||||||.+++.. .++.++..+. ...++++++|+......-. + ..+.+.++.+...++.+...+
T Consensus 3 ~g~pVlFIhG~~Gs~~-q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~--g--~~l~~q~~~~~~~i~~i~~~~ 77 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYK-QVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFH--G--RTLQRQAEFLAEAIKYILELY 77 (225)
T ss_pred CCCEEEEECcCCCCHh-HHHHHHHHHhhhhhhccCccceeEEEeccCccccccc--c--ccHHHHHHHHHHHHHHHHHhh
Confidence 3679999999988866 5666655542 1257899999876432211 1 134455555555555554433
Q ss_pred ---CCCCCCEEEEEechhHHHHHHHHhhcC---CCCeeEEEEccCccCCC
Q 020630 126 ---PYRDLPAFLFGESMGGAATMLMYFQSE---PNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 126 ---~~~~~~~~l~G~S~Gg~~a~~~a~~~p---~~~v~~~il~~~~~~~~ 169 (323)
.....++++|||||||.+|..++...+ +. |+.+|.++++...+
T Consensus 78 ~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~-v~~iitl~tPh~g~ 126 (225)
T PF07819_consen 78 KSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDS-VKTIITLGTPHRGS 126 (225)
T ss_pred hhccCCCCceEEEEEchhhHHHHHHHhcccccccc-EEEEEEEcCCCCCc
Confidence 123679999999999999988876643 34 99999988776544
No 137
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.3e-10 Score=84.21 Aligned_cols=242 Identities=10% Similarity=0.036 Sum_probs=135.2
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcC---CcEEEEeccccCcCCC---C-----CCCCCCChHHHHhhHHHHHHHH
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATW---GYAVFAADLLGHGRSD---G-----IRCYLGDMEKVAASSLSFFKHV 121 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~---g~~vi~~d~~G~G~s~---~-----~~~~~~~~~~~~~d~~~~i~~l 121 (323)
..++.+++++|.+|... +|..+++.|... .+.++.+-..||-.-+ . .....++++++++.=.++++..
T Consensus 27 ~~~~li~~IpGNPG~~g-FY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~ 105 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLLG-FYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEY 105 (301)
T ss_pred CCceEEEEecCCCCchh-HHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHh
Confidence 56899999999999987 788888877643 1558888877775544 1 1123457888888888888776
Q ss_pred HhhCCCCCCCEEEEEechhHHHHHHHHhh-cCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCccc
Q 020630 122 RHSEPYRDLPAFLFGESMGGAATMLMYFQ-SEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKM 200 (323)
Q Consensus 122 ~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~-~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (323)
.-+ +.+++++|||.|+++.+.++.. .+..+|.+++++-|..---......+........+....... ..
T Consensus 106 ~Pk----~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTIerM~eSpnG~~~t~~l~~~~hv~~lt------~y 175 (301)
T KOG3975|consen 106 VPK----DRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTIERMHESPNGIRLTKVLRYLPHVVSLT------SY 175 (301)
T ss_pred CCC----CCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchHHHHhcCCCceEeeeeeeeehhhhhee------ee
Confidence 655 6699999999999999998873 344448888887765421111111111111111000000000 00
Q ss_pred ccccccChhhHHHhhcCCcccCCCC-------------------CchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcc
Q 020630 201 VGKAIKDPEKLKVIASNPRRYTGKP-------------------RVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGV 261 (323)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~ 261 (323)
.--.......+.++..........+ ..-...++......-.+.+.+-.+-+.+.+|..|.+
T Consensus 176 i~~~~lp~~ir~~Li~~~l~~~n~p~e~l~tal~l~h~~v~rn~v~la~qEm~eV~~~d~e~~een~d~l~Fyygt~DgW 255 (301)
T KOG3975|consen 176 IYWILLPGFIRFILIKFMLCGSNGPQEFLSTALFLTHPQVVRNSVGLAAQEMEEVTTRDIEYCEENLDSLWFYYGTNDGW 255 (301)
T ss_pred eeeecChHHHHHHHHHHhcccCCCcHHHHhhHHHhhcHHHHHHHhhhchHHHHHHHHhHHHHHHhcCcEEEEEccCCCCC
Confidence 0000000000111100000000000 000011111111112233444467889999999999
Q ss_pred cCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHH
Q 020630 262 TCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREW 310 (323)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~f 310 (323)
+|.+....+.+.++..++++-+ ++..|.+..... +..++.+.+.
T Consensus 256 ~p~~~~d~~kdd~~eed~~Lde-dki~HAFV~~~~----q~ma~~v~d~ 299 (301)
T KOG3975|consen 256 VPSHYYDYYKDDVPEEDLKLDE-DKIPHAFVVKHA----QYMANAVFDM 299 (301)
T ss_pred cchHHHHHHhhhcchhceeecc-ccCCcceeeccc----HHHHHHHHHh
Confidence 9999999999999655666666 778999985554 4454544443
No 138
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.34 E-value=3.8e-10 Score=85.04 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=83.9
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
|+++++|+.++... .|..++..|... ..|+.++.||.+.-... ..+++++++...+.|..++.+ .+++|+
T Consensus 1 ~pLF~fhp~~G~~~-~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~---~~~l~~~a~~yv~~Ir~~QP~-----GPy~L~ 70 (257)
T COG3319 1 PPLFCFHPAGGSVL-AYAPLAAALGPL-LPVYGLQAPGYGAGEQP---FASLDDMAAAYVAAIRRVQPE-----GPYVLL 70 (257)
T ss_pred CCEEEEcCCCCcHH-HHHHHHHHhccC-ceeeccccCcccccccc---cCCHHHHHHHHHHHHHHhCCC-----CCEEEE
Confidence 57999999998865 899999999887 99999999999853222 237999999888888888765 389999
Q ss_pred EechhHHHHHHHHhh---cCCCCeeEEEEccCccC
Q 020630 136 GESMGGAATMLMYFQ---SEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 136 G~S~Gg~~a~~~a~~---~p~~~v~~~il~~~~~~ 167 (323)
|||+||.+|..+|.+ ..+. |..++++++...
T Consensus 71 G~S~GG~vA~evA~qL~~~G~~-Va~L~llD~~~~ 104 (257)
T COG3319 71 GWSLGGAVAFEVAAQLEAQGEE-VAFLGLLDAVPP 104 (257)
T ss_pred eeccccHHHHHHHHHHHhCCCe-EEEEEEeccCCC
Confidence 999999999999986 2334 999999998876
No 139
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.32 E-value=1.8e-10 Score=81.85 Aligned_cols=182 Identities=17% Similarity=0.183 Sum_probs=118.2
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCC-----------------CCCCCCCChHHHHhhHHHH
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSD-----------------GIRCYLGDMEKVAASSLSF 117 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~-----------------~~~~~~~~~~~~~~d~~~~ 117 (323)
..+||++||.|.+.. .|..+.+.|.-....-|++.-|-.-.+. ........+...++.+..+
T Consensus 3 ~atIi~LHglGDsg~-~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~L 81 (206)
T KOG2112|consen 3 TATIIFLHGLGDSGS-GWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANL 81 (206)
T ss_pred eEEEEEEecCCCCCc-cHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHH
Confidence 568999999998876 6777777776666677777544221111 0000112344555666666
Q ss_pred HHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCC
Q 020630 118 FKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPD 197 (323)
Q Consensus 118 i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (323)
+++.... +++..++.+-|.||||.+++..+..++.. +.+++..++.........+ .+
T Consensus 82 i~~e~~~-Gi~~~rI~igGfs~G~a~aL~~~~~~~~~-l~G~~~~s~~~p~~~~~~~----------------~~----- 138 (206)
T KOG2112|consen 82 IDNEPAN-GIPSNRIGIGGFSQGGALALYSALTYPKA-LGGIFALSGFLPRASIGLP----------------GW----- 138 (206)
T ss_pred HHHHHHc-CCCccceeEcccCchHHHHHHHHhccccc-cceeeccccccccchhhcc----------------CC-----
Confidence 6655443 34456799999999999999999999776 7777776655431100000 00
Q ss_pred cccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhc--
Q 020630 198 NKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKAS-- 275 (323)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-- 275 (323)
....+ ..|++..||+.|++||....+...+.+.
T Consensus 139 -------------------------------------------~~~~~--~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~ 173 (206)
T KOG2112|consen 139 -------------------------------------------LPGVN--YTPILLCHGTADPLVPFRFGEKSAQFLKSL 173 (206)
T ss_pred -------------------------------------------ccccC--cchhheecccCCceeehHHHHHHHHHHHHc
Confidence 00001 6799999999999999877666555552
Q ss_pred CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 276 SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 276 ~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
...+++..|++.+|... ++ =.+.+..|+.+
T Consensus 174 ~~~~~f~~y~g~~h~~~---~~-----e~~~~~~~~~~ 203 (206)
T KOG2112|consen 174 GVRVTFKPYPGLGHSTS---PQ-----ELDDLKSWIKT 203 (206)
T ss_pred CCceeeeecCCcccccc---HH-----HHHHHHHHHHH
Confidence 23378999999999998 22 34667777765
No 140
>PRK04940 hypothetical protein; Provisional
Probab=99.27 E-value=1.1e-09 Score=77.27 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=96.6
Q ss_pred EEEecCCCCCcchh-hH-HHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 58 VYMTHGYGSDTGWM-FQ-KICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 58 vv~~hG~~~~~~~~-~~-~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
||++||+.++.... .. .....+ ..+.+++ +++ .....+..+.+.+.+..+..... .+++.||
T Consensus 2 IlYlHGF~SS~~S~~~Ka~~l~~~-~p~~~~~--~l~-----------~~~P~~a~~~l~~~i~~~~~~~~--~~~~~li 65 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVLQLQFI-DPDVRLI--SYS-----------TLHPKHDMQHLLKEVDKMLQLSD--DERPLIC 65 (180)
T ss_pred EEEeCCCCCCCCccHHHHHhheee-CCCCeEE--ECC-----------CCCHHHHHHHHHHHHHHhhhccC--CCCcEEE
Confidence 79999999876521 21 111122 1123333 221 01344444555555554322110 1378999
Q ss_pred EechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhh
Q 020630 136 GESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIA 215 (323)
Q Consensus 136 G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (323)
|.|+||+.|..++.++.- ..|+++|....... +...+.. .
T Consensus 66 GSSLGGyyA~~La~~~g~----~aVLiNPAv~P~~~---------L~~~ig~--------~------------------- 105 (180)
T PRK04940 66 GVGLGGYWAERIGFLCGI----RQVIFNPNLFPEEN---------MEGKIDR--------P------------------- 105 (180)
T ss_pred EeChHHHHHHHHHHHHCC----CEEEECCCCChHHH---------HHHHhCC--------C-------------------
Confidence 999999999999999774 37888887753211 0000000 0
Q ss_pred cCCcccCCCCCchhHHHHHHhhHHHHhcCC-cccccEEEEeeCCCcccCchhHHHHHHHhcCCCC-cEEEecCCCccccc
Q 020630 216 SNPRRYTGKPRVGTMREIARVCQYIQDNFS-KVTVPFLTVHGTADGVTCPTSSKLLYEKASSADK-SIKIYDGMYHSLIQ 293 (323)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~ 293 (323)
.. +. .+. ....+.++ +-.-..+++..+.|.+.+...+...+. ++ +..+.+|++|.+.
T Consensus 106 --~~-y~---------~~~---~~h~~eL~~~~p~r~~vllq~gDEvLDyr~a~~~y~-----~~y~~~v~~GGdH~f~- 164 (180)
T PRK04940 106 --EE-YA---------DIA---TKCVTNFREKNRDRCLVILSRNDEVLDSQRTAEELH-----PYYEIVWDEEQTHKFK- 164 (180)
T ss_pred --cc-hh---------hhh---HHHHHHhhhcCcccEEEEEeCCCcccCHHHHHHHhc-----cCceEEEECCCCCCCC-
Confidence 00 00 000 00011111 112345899999999998876665443 34 6888898888886
Q ss_pred cCCchhHHHHHHHHHHHHH
Q 020630 294 GEPDENANLVLKDMREWID 312 (323)
Q Consensus 294 ~~~~~~~~~~~~~i~~fl~ 312 (323)
..++....|.+|+.
T Consensus 165 -----~fe~~l~~I~~F~~ 178 (180)
T PRK04940 165 -----NISPHLQRIKAFKT 178 (180)
T ss_pred -----CHHHHHHHHHHHHh
Confidence 34668888999984
No 141
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.22 E-value=4e-10 Score=84.37 Aligned_cols=126 Identities=17% Similarity=0.074 Sum_probs=89.7
Q ss_pred CCC-cEEEEEecCCCC-CCceEEEEecCCCCCcchhhHHHH--HHHh-cCCcEEEEeccc-------cCcCCCCCCCCCC
Q 020630 38 PNG-KLFTQSFLPLDQ-KVKATVYMTHGYGSDTGWMFQKIC--ISYA-TWGYAVFAADLL-------GHGRSDGIRCYLG 105 (323)
Q Consensus 38 ~~g-~l~~~~~~~~~~-~~~~~vv~~hG~~~~~~~~~~~~~--~~l~-~~g~~vi~~d~~-------G~G~s~~~~~~~~ 105 (323)
.+| +..|..|.|.+. .+.|.||++||.+++.. .+.... +.|+ ..||-|+.+|-- +.+.+..+....
T Consensus 42 ~~g~~r~y~l~vP~g~~~~apLvv~LHG~~~sga-g~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~~- 119 (312)
T COG3509 42 VNGLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGA-GQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPADRR- 119 (312)
T ss_pred cCCCccceEEEcCCCCCCCCCEEEEEecCCCChH-HhhcccchhhhhcccCcEEECcCccccccCCCcccccCCccccc-
Confidence 345 889999998762 34589999999988754 222222 3333 359999998522 122221121111
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
.-.+-+..|.+++..+..+++++..+|++.|.|-||.++..++..+|+. +.++.++++..
T Consensus 120 ~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~-faa~A~VAg~~ 179 (312)
T COG3509 120 RGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDI-FAAIAPVAGLL 179 (312)
T ss_pred CCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCccc-ccceeeeeccc
Confidence 1223467788899999999999999999999999999999999999998 88888877655
No 142
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=99.20 E-value=4.5e-10 Score=84.35 Aligned_cols=110 Identities=16% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCC------C--CCCC------------------C--
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSD------G--IRCY------------------L-- 104 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~------~--~~~~------------------~-- 104 (323)
..-|+|||-||+|++.. .|..++-.|+.+||.|.+++.|-+-.+. . .... .
T Consensus 116 ~k~PvvvFSHGLggsRt-~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~irN 194 (399)
T KOG3847|consen 116 DKYPVVVFSHGLGGSRT-LYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIRN 194 (399)
T ss_pred CCccEEEEecccccchh-hHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEeeC
Confidence 45699999999999877 8999999999999999999998654332 0 0000 0
Q ss_pred CChHHHHhhHHH---HHHHHHhhC------------------CCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEcc
Q 020630 105 GDMEKVAASSLS---FFKHVRHSE------------------PYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSA 163 (323)
Q Consensus 105 ~~~~~~~~d~~~---~i~~l~~~~------------------~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~ 163 (323)
.....-++.+.. +|+.+..-. ..+..++.++|||+||..++.....+.+ ++..|+.+
T Consensus 195 eqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~--FrcaI~lD 272 (399)
T KOG3847|consen 195 EQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTD--FRCAIALD 272 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccc--eeeeeeee
Confidence 001111222222 233322211 1234578999999999999888777666 88888877
Q ss_pred Cc
Q 020630 164 PL 165 (323)
Q Consensus 164 ~~ 165 (323)
.+
T Consensus 273 ~W 274 (399)
T KOG3847|consen 273 AW 274 (399)
T ss_pred ee
Confidence 65
No 143
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.19 E-value=7.7e-10 Score=90.30 Aligned_cols=187 Identities=18% Similarity=0.198 Sum_probs=122.2
Q ss_pred ceEEEEecCCC-C--Ccc--hhhHHHHHHHhcCCcEEEEecccc-CcCCCCCCCCCCChHHHHhhHHHHHHHH--HhhCC
Q 020630 55 KATVYMTHGYG-S--DTG--WMFQKICISYATWGYAVFAADLLG-HGRSDGIRCYLGDMEKVAASSLSFFKHV--RHSEP 126 (323)
Q Consensus 55 ~~~vv~~hG~~-~--~~~--~~~~~~~~~l~~~g~~vi~~d~~G-~G~s~~~~~~~~~~~~~~~d~~~~i~~l--~~~~~ 126 (323)
.|.+|++||.+ . .++ |.|+.......+. ..+..+|++. .|. .++...++.+..+.++. .....
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gev-vev~tfdl~n~igG--------~nI~h~ae~~vSf~r~kvlei~ge 246 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEV-VEVPTFDLNNPIGG--------ANIKHAAEYSVSFDRYKVLEITGE 246 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhcee-eeeccccccCCCCC--------cchHHHHHHHHHHhhhhhhhhhcc
Confidence 58999999987 1 122 3444444333332 5567778763 221 25666666666666632 22223
Q ss_pred CCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCccccccccc
Q 020630 127 YRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIK 206 (323)
Q Consensus 127 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
....+++|+|.|||+.++.+....+.+..|+++|+++-......... ..
T Consensus 247 fpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgpr------------------------------gi- 295 (784)
T KOG3253|consen 247 FPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPR------------------------------GI- 295 (784)
T ss_pred CCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCccc------------------------------CC-
Confidence 34779999999999998888877665544899998875443222110 00
Q ss_pred ChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecC
Q 020630 207 DPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDG 286 (323)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (323)
..+.+-.++.|+||+.|.+|..+++...+.+.+++.. ..+++++.+
T Consensus 296 ---------------------------------rDE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA-~~elhVI~~ 341 (784)
T KOG3253|consen 296 ---------------------------------RDEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA-EVELHVIGG 341 (784)
T ss_pred ---------------------------------cchhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc-cceEEEecC
Confidence 1234455688999999999999999999999999864 478999999
Q ss_pred CCccccccC-----CchhHHHHHHHHHHHHHHHH
Q 020630 287 MYHSLIQGE-----PDENANLVLKDMREWIDERV 315 (323)
Q Consensus 287 ~gH~~~~~~-----~~~~~~~~~~~i~~fl~~~~ 315 (323)
++|.+-... .......+...+.+||.+..
T Consensus 342 adhsmaipk~k~esegltqseVd~~i~~aI~efv 375 (784)
T KOG3253|consen 342 ADHSMAIPKRKVESEGLTQSEVDSAIAQAIKEFV 375 (784)
T ss_pred CCccccCCccccccccccHHHHHHHHHHHHHHHH
Confidence 999987533 12234445555555555443
No 144
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=99.19 E-value=2.1e-08 Score=79.00 Aligned_cols=208 Identities=13% Similarity=0.239 Sum_probs=128.1
Q ss_pred eeEEecCCCcEEEEEecCC-CCCCceEEEEecCCCCCcch--hhHHHHHHHhcCCcEEEEecccc--CcCCC--------
Q 020630 32 KEYFETPNGKLFTQSFLPL-DQKVKATVYMTHGYGSDTGW--MFQKICISYATWGYAVFAADLLG--HGRSD-------- 98 (323)
Q Consensus 32 ~~~~~~~~g~l~~~~~~~~-~~~~~~~vv~~hG~~~~~~~--~~~~~~~~l~~~g~~vi~~d~~G--~G~s~-------- 98 (323)
...+.. +++=+...|.+. ..+....||++||.+.+..| ....+.+.|.+.||..+++.+|. .....
T Consensus 64 ~~~L~~-~~~~flaL~~~~~~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~ 142 (310)
T PF12048_consen 64 VQWLQA-GEERFLALWRPANSAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEE 142 (310)
T ss_pred cEEeec-CCEEEEEEEecccCCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCC
Confidence 334444 443333444443 33567899999999988653 45678888999999999999887 11110
Q ss_pred --CC------CC--------------CCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCe
Q 020630 99 --GI------RC--------------YLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTW 156 (323)
Q Consensus 99 --~~------~~--------------~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v 156 (323)
.. .. .....+.+..-+.+++..+.... ..+++|+||+.|+..++.+....+...+
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~ 219 (310)
T PF12048_consen 143 VPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMP 219 (310)
T ss_pred CCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCccc
Confidence 00 00 00012344456667777776663 3349999999999999999998776448
Q ss_pred eEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHh
Q 020630 157 TGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARV 236 (323)
Q Consensus 157 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (323)
+++|++++.......
T Consensus 220 daLV~I~a~~p~~~~----------------------------------------------------------------- 234 (310)
T PF12048_consen 220 DALVLINAYWPQPDR----------------------------------------------------------------- 234 (310)
T ss_pred CeEEEEeCCCCcchh-----------------------------------------------------------------
Confidence 999999986432110
Q ss_pred hHHHHhcCCcccccEEEEeeCCCcccCchhHH---HHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 237 CQYIQDNFSKVTVPFLTVHGTADGVTCPTSSK---LLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 237 ~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
...+.+.+.+++.|||=|++.....+ ...+. ...++....+-+-+.+.+..|... ...+.+.+.|..||.+
T Consensus 235 n~~l~~~la~l~iPvLDi~~~~~~~~-~~~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~-----~~~~~l~~rIrGWL~~ 308 (310)
T PF12048_consen 235 NPALAEQLAQLKIPVLDIYSADNPAS-QQTAKQRKQAAKRNKKPDYRQIQLPGLPDNPS-----GWQEQLLRRIRGWLKR 308 (310)
T ss_pred hhhHHHHhhccCCCEEEEecCCChHH-HHHHHHHHHHHHhccCCCceeEecCCCCCChh-----hHHHHHHHHHHHHHHh
Confidence 00134556778999999998873222 22111 112222223445566666555443 2234499999999987
Q ss_pred H
Q 020630 314 R 314 (323)
Q Consensus 314 ~ 314 (323)
+
T Consensus 309 ~ 309 (310)
T PF12048_consen 309 H 309 (310)
T ss_pred h
Confidence 5
No 145
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.18 E-value=3.1e-08 Score=81.16 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=75.1
Q ss_pred cEEEEEecCCC--CCCceEEEEecCCCCCcchhhHHHHHHHhcCCc----EEEEeccccCcCCCCCCCCCCChHHHHhhH
Q 020630 41 KLFTQSFLPLD--QKVKATVYMTHGYGSDTGWMFQKICISYATWGY----AVFAADLLGHGRSDGIRCYLGDMEKVAASS 114 (323)
Q Consensus 41 ~l~~~~~~~~~--~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~----~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~ 114 (323)
+..+.+|.|.+ .++.|+|+++||-..........+.+.|...|. .++.+|..+.. ....... ....+.+.+
T Consensus 193 ~r~v~VY~P~~y~~~~~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~--~R~~el~-~~~~f~~~l 269 (411)
T PRK10439 193 SRRVWIYTTGDAAPEERPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTT--HRSQELP-CNADFWLAV 269 (411)
T ss_pred ceEEEEEECCCCCCCCCCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcc--cccccCC-chHHHHHHH
Confidence 77788888864 245699999999653322123344556655553 35677753211 1111111 122222222
Q ss_pred -HHHHHHHHhhCCC--CCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 115 -LSFFKHVRHSEPY--RDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 115 -~~~i~~l~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
.+++-++..++++ +..+.+|+|+||||..|+.++.++|+. +.+++.+++..
T Consensus 270 ~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~-Fg~v~s~Sgs~ 323 (411)
T PRK10439 270 QQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPER-FGCVLSQSGSF 323 (411)
T ss_pred HHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCccc-ccEEEEeccce
Confidence 3344444444332 355789999999999999999999999 99999999754
No 146
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=99.15 E-value=3.6e-11 Score=88.57 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=58.2
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcE---EEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYA---VFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPA 132 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~---vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~ 132 (323)
.||||+||.+++....|..+++.|.++||. |+++++-............ ...+.++.+.++|+.+....+ . +|
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~-~~~~~~~~l~~fI~~Vl~~TG--a-kV 77 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAH-MSCESAKQLRAFIDAVLAYTG--A-KV 77 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHH-B-HHHHHHHHHHHHHHHHHHT-----E
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCcccccc-cchhhHHHHHHHHHHHHHhhC--C-EE
Confidence 479999999986555899999999999999 7999985444322111000 122345788888888876654 5 99
Q ss_pred EEEEechhHHHHHHHHhh
Q 020630 133 FLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~ 150 (323)
-||||||||.++-.+...
T Consensus 78 DIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 78 DIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp EEEEETCHHHHHHHHHHH
T ss_pred EEEEcCCcCHHHHHHHHH
Confidence 999999999999888764
No 147
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=99.15 E-value=8.8e-11 Score=92.80 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=72.3
Q ss_pred CCceEEEEecCCCCCc-ch-hhHHHHHH-Hhc--CCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCC
Q 020630 53 KVKATVYMTHGYGSDT-GW-MFQKICIS-YAT--WGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPY 127 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~-~~-~~~~~~~~-l~~--~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 127 (323)
..+|++|++|||.++. .. ....+.+. |.. .+++||++|+...-...-. ........+.+.+..+|..|....++
T Consensus 69 ~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~-~a~~n~~~vg~~la~~l~~L~~~~g~ 147 (331)
T PF00151_consen 69 PSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYP-QAVANTRLVGRQLAKFLSFLINNFGV 147 (331)
T ss_dssp TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HH-HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcccccc-chhhhHHHHHHHHHHHHHHHHhhcCC
Confidence 4689999999998776 21 23444554 444 4899999999743221100 00012445567777778887755455
Q ss_pred CCCCEEEEEechhHHHHHHHHhhcCC--CCeeEEEEccCccCCCC
Q 020630 128 RDLPAFLFGESMGGAATMLMYFQSEP--NTWTGLIFSAPLFVIPE 170 (323)
Q Consensus 128 ~~~~~~l~G~S~Gg~~a~~~a~~~p~--~~v~~~il~~~~~~~~~ 170 (323)
+..+++|+|||+||++|-.++..... + |..|+.++|+.....
T Consensus 148 ~~~~ihlIGhSLGAHvaG~aG~~~~~~~k-i~rItgLDPAgP~F~ 191 (331)
T PF00151_consen 148 PPENIHLIGHSLGAHVAGFAGKYLKGGGK-IGRITGLDPAGPLFE 191 (331)
T ss_dssp -GGGEEEEEETCHHHHHHHHHHHTTT----SSEEEEES-B-TTTT
T ss_pred ChhHEEEEeeccchhhhhhhhhhccCcce-eeEEEecCccccccc
Confidence 57799999999999999998888766 5 999999998876543
No 148
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=99.12 E-value=4.8e-10 Score=85.35 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=87.2
Q ss_pred ceeEEecCCC-cEEEEEecCC---CCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCC
Q 020630 31 GKEYFETPNG-KLFTQSFLPL---DQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGD 106 (323)
Q Consensus 31 ~~~~~~~~~g-~l~~~~~~~~---~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~ 106 (323)
.+..+++.|| +|-....... .++....||++-|..+-.+ -.-+.. =++.||.|+.+++||++.|.+.+....+
T Consensus 215 ~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYE--vG~m~t-P~~lgYsvLGwNhPGFagSTG~P~p~n~ 291 (517)
T KOG1553|consen 215 QRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYE--VGVMNT-PAQLGYSVLGWNHPGFAGSTGLPYPVNT 291 (517)
T ss_pred eEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccceE--eeeecC-hHHhCceeeccCCCCccccCCCCCcccc
Confidence 4566788888 5544333222 2244678899988765432 111122 2245899999999999999987654433
Q ss_pred hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCC
Q 020630 107 MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 107 ~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~ 168 (323)
...+-.-+.-+|..++-+ .+.+++.|+|.||..+..+|..+|+ |+++|+-+++.+.
T Consensus 292 ~nA~DaVvQfAI~~Lgf~----~edIilygWSIGGF~~~waAs~YPd--VkavvLDAtFDDl 347 (517)
T KOG1553|consen 292 LNAADAVVQFAIQVLGFR----QEDIILYGWSIGGFPVAWAASNYPD--VKAVVLDATFDDL 347 (517)
T ss_pred hHHHHHHHHHHHHHcCCC----ccceEEEEeecCCchHHHHhhcCCC--ceEEEeecchhhh
Confidence 332222233345555544 6689999999999999999999999 9999999877654
No 149
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.09 E-value=6.2e-10 Score=91.09 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=75.3
Q ss_pred chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHH
Q 020630 69 GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMY 148 (323)
Q Consensus 69 ~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a 148 (323)
.+.|..+++.|.+.||.+ ..|++|+|.+..... ..++..+++.++++.+....+ ..+++|+||||||.++..++
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~fl 180 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSN---RLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKCFM 180 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCcccCCCCccccc---cHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHHHH
Confidence 348999999999999865 899999999875421 356677888888888766644 56999999999999999999
Q ss_pred hhcCCC---CeeEEEEccCccCCC
Q 020630 149 FQSEPN---TWTGLIFSAPLFVIP 169 (323)
Q Consensus 149 ~~~p~~---~v~~~il~~~~~~~~ 169 (323)
..+|+. .|+++|.++++....
T Consensus 181 ~~~p~~~~k~I~~~I~la~P~~Gs 204 (440)
T PLN02733 181 SLHSDVFEKYVNSWIAIAAPFQGA 204 (440)
T ss_pred HHCCHhHHhHhccEEEECCCCCCC
Confidence 887752 278889888765543
No 150
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=99.09 E-value=3.8e-09 Score=81.06 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=83.3
Q ss_pred ceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcch--h----hHHHHHHHhcCCcEEEEeccccCcCCCCCCCC
Q 020630 31 GKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGW--M----FQKICISYATWGYAVFAADLLGHGRSDGIRCY 103 (323)
Q Consensus 31 ~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~--~----~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~ 103 (323)
.+..+.. |+ .|-.....-++.++...||+.-|.++..+. . ...+.+.....|-+|+.++|||.|.|.+..
T Consensus 113 kRv~Iq~-D~~~IDt~~I~~~~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~-- 189 (365)
T PF05677_consen 113 KRVPIQY-DGVKIDTMAIHQPEAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPP-- 189 (365)
T ss_pred eeEEEee-CCEEEEEEEeeCCCCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCC--
Confidence 3344444 66 666655553333668899999998865442 1 012223233347899999999999998765
Q ss_pred CCChHHHHhhHHHHHHHHHhhC-CCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 104 LGDMEKVAASSLSFFKHVRHSE-PYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 104 ~~~~~~~~~d~~~~i~~l~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
+.++++.|..+.++++..+. +++..++++.|||+||.++..++..+
T Consensus 190 --s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 190 --SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred --CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 57999999999999998643 34567899999999999998876664
No 151
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.09 E-value=1.5e-09 Score=88.79 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=151.7
Q ss_pred cccCCccceeEEecCCC-cEEEEEecCC-CCCCceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCCC
Q 020630 24 TSQGVRNGKEYFETPNG-KLFTQSFLPL-DQKVKATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSDGI 100 (323)
Q Consensus 24 ~~~~~~~~~~~~~~~~g-~l~~~~~~~~-~~~~~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~ 100 (323)
+..++..++...++.|| +|.|.+.+.. ...+.|++|+--|...-+ ...|......+.++|...+..+.||=|+-...
T Consensus 388 Da~~~~veQ~~atSkDGT~IPYFiv~K~~~~d~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~ 467 (648)
T COG1505 388 DADNYEVEQFFATSKDGTRIPYFIVRKGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPE 467 (648)
T ss_pred CccCceEEEEEEEcCCCccccEEEEecCCcCCCCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHH
Confidence 34456667888899999 9999998721 123567766554433221 22455555777788999999999998766421
Q ss_pred ---CCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHH
Q 020630 101 ---RCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKL 177 (323)
Q Consensus 101 ---~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~ 177 (323)
.....+-+...+|..++.+.|..+.-..++++.+.|-|-||.+.-.+..++|+. +.++|+--|..++-....
T Consensus 468 WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPel-fgA~v~evPllDMlRYh~---- 542 (648)
T COG1505 468 WHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPEL-FGAAVCEVPLLDMLRYHL---- 542 (648)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhh-hCceeeccchhhhhhhcc----
Confidence 111124456678888999988887655567899999999999999989999998 888888777665321100
Q ss_pred HHHHhhcccccccccccCCCccccccc--ccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCC--cccccEEE
Q 020630 178 HLFMYGLLFGLADTWAAMPDNKMVGKA--IKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFS--KVTVPFLT 253 (323)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~P~l~ 253 (323)
......+.... -.++.....+..... ...++ ..-.|+||
T Consensus 543 ----------------l~aG~sW~~EYG~Pd~P~d~~~l~~YSP---------------------y~nl~~g~kYP~~LI 585 (648)
T COG1505 543 ----------------LTAGSSWIAEYGNPDDPEDRAFLLAYSP---------------------YHNLKPGQKYPPTLI 585 (648)
T ss_pred ----------------cccchhhHhhcCCCCCHHHHHHHHhcCc---------------------hhcCCccccCCCeEE
Confidence 00000011000 011111112211110 11122 22358999
Q ss_pred EeeCCCcccCchhHHHHHHHhcCCCCcEEEe--cCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 254 VHGTADGVTCPTSSKLLYEKASSADKSIKIY--DGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 254 i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
-.+.+|.-|.|.+++.++..+...+.....+ .++||..--... +. ..-...+..||.+.+
T Consensus 586 TTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~-~~-A~~~a~~~afl~r~L 647 (648)
T COG1505 586 TTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTA-EI-ARELADLLAFLLRTL 647 (648)
T ss_pred EcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChH-HH-HHHHHHHHHHHHHhh
Confidence 9999999999999999999885333333333 468999873221 21 223344566776654
No 152
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=99.08 E-value=3.4e-08 Score=72.27 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=78.0
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCC-----cEEEEeccccC----cCCCCC----------CCCCCChHHHHhhHHH
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWG-----YAVFAADLLGH----GRSDGI----------RCYLGDMEKVAASSLS 116 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g-----~~vi~~d~~G~----G~s~~~----------~~~~~~~~~~~~d~~~ 116 (323)
-+.||+||.+++.. ....++..|...+ --++.+|--|- |.=+.. .....+..++...+..
T Consensus 46 iPTIfIhGsgG~as-S~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~ 124 (288)
T COG4814 46 IPTIFIHGSGGTAS-SLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKK 124 (288)
T ss_pred cceEEEecCCCChh-HHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHH
Confidence 47799999999987 7778888887653 13455665551 111111 1112356777899999
Q ss_pred HHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc------CCCCeeEEEEccCccC
Q 020630 117 FFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS------EPNTWTGLIFSAPLFV 167 (323)
Q Consensus 117 ~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~------p~~~v~~~il~~~~~~ 167 (323)
++.+|+.++. -.++.+|||||||.-...++..+ |. +..+|.+++.+.
T Consensus 125 ~msyL~~~Y~--i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~--lnK~V~l~gpfN 177 (288)
T COG4814 125 AMSYLQKHYN--IPKFNAVGHSMGGLGLTYYMIDYGDDKSLPP--LNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHhcC--CceeeeeeeccccHHHHHHHHHhcCCCCCcc--hhheEEeccccc
Confidence 9999999987 56899999999999999998874 44 889998887665
No 153
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=99.07 E-value=1.6e-09 Score=81.66 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=75.0
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCc--EEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCC
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGY--AVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDL 130 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~--~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~ 130 (323)
..+.++||+||+..+........++.....++ .++.+.+|+.|.-..-.....+...-...+..+|+.+....+ ..
T Consensus 16 ~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~--~~ 93 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPG--IK 93 (233)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccC--Cc
Confidence 34789999999997743223333332222233 799999998876332111111344556778888888877643 66
Q ss_pred CEEEEEechhHHHHHHHHhh----cC-----CCCeeEEEEccCccC
Q 020630 131 PAFLFGESMGGAATMLMYFQ----SE-----PNTWTGLIFSAPLFV 167 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~----~p-----~~~v~~~il~~~~~~ 167 (323)
+|+|++||||+.+.+.+... .. .. +..+|+++|-.+
T Consensus 94 ~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~-~~~viL~ApDid 138 (233)
T PF05990_consen 94 RIHILAHSMGNRVLLEALRQLASEGERPDVKAR-FDNVILAAPDID 138 (233)
T ss_pred eEEEEEeCchHHHHHHHHHHHHhcccchhhHhh-hheEEEECCCCC
Confidence 99999999999999887654 11 23 788999987664
No 154
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=9.6e-09 Score=84.80 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=101.7
Q ss_pred ccccCCccceeEEecCCC-cEEEEEecCCC---CCCceEEEEecCCCCC-cchhhHHHHHHHhcCCcEEEEeccccCcCC
Q 020630 23 YTSQGVRNGKEYFETPNG-KLFTQSFLPLD---QKVKATVYMTHGYGSD-TGWMFQKICISYATWGYAVFAADLLGHGRS 97 (323)
Q Consensus 23 ~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~---~~~~~~vv~~hG~~~~-~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s 97 (323)
++......++..+.+.|| .+...+..... .+++|.+|..+|.-+- -...|..-...|.++|+.....|.||-|+-
T Consensus 434 ~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~ 513 (712)
T KOG2237|consen 434 FDASDYVVERIEVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEY 513 (712)
T ss_pred ccccceEEEEEEEecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCccc
Confidence 334445567888999999 77766655432 2568888877775432 222444434456678999999999997655
Q ss_pred C---CCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 98 D---GIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 98 ~---~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
. ...+....-....+|+.+.+++|..+.-....+..+.|.|.||.++..++.++|+. +.++|+-.|+.+
T Consensus 514 G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdL-F~avia~VpfmD 585 (712)
T KOG2237|consen 514 GEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDL-FGAVIAKVPFMD 585 (712)
T ss_pred ccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchH-hhhhhhcCccee
Confidence 4 22222112334457777778888777666677999999999999999999999999 999998887765
No 155
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=99.02 E-value=3.4e-08 Score=82.52 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=89.0
Q ss_pred eeEEecC--CC-cEEEEEecCCC-CCCceEEEEecCCCCCcchhhHHHHH-------------------HHhcCCcEEEE
Q 020630 32 KEYFETP--NG-KLFTQSFLPLD-QKVKATVYMTHGYGSDTGWMFQKICI-------------------SYATWGYAVFA 88 (323)
Q Consensus 32 ~~~~~~~--~g-~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~~~~~~~~-------------------~l~~~g~~vi~ 88 (323)
..++... .+ +++|..+...+ .+.+|+||++.|.++.++ .+..+.+ .+.+. .+++-
T Consensus 13 sGyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS-~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~ 90 (415)
T PF00450_consen 13 SGYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSS-MWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLF 90 (415)
T ss_dssp EEEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-T-HHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEE
T ss_pred EEEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceecc-ccccccccCceEEeecccccccccccccccc-cceEE
Confidence 3445444 45 89999887654 356899999999988776 4433322 12232 68999
Q ss_pred eccc-cCcCCCCCCC--CCCChHHHHhhHHHHHHHHHhhCC-CCCCCEEEEEechhHHHHHHHHhh----c-----CCCC
Q 020630 89 ADLL-GHGRSDGIRC--YLGDMEKVAASSLSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQ----S-----EPNT 155 (323)
Q Consensus 89 ~d~~-G~G~s~~~~~--~~~~~~~~~~d~~~~i~~l~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~----~-----p~~~ 155 (323)
+|.| |.|.|..... ...+.++.++++..+|+..-.+.+ ....+++|.|-|+||..+-.+|.. . +...
T Consensus 91 iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 91 IDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp E--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred EeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 9966 8999975443 234788899999999988877665 345589999999999887666643 2 1334
Q ss_pred eeEEEEccCccCC
Q 020630 156 WTGLIFSAPLFVI 168 (323)
Q Consensus 156 v~~~il~~~~~~~ 168 (323)
++++++.++..+.
T Consensus 171 LkGi~IGng~~dp 183 (415)
T PF00450_consen 171 LKGIAIGNGWIDP 183 (415)
T ss_dssp EEEEEEESE-SBH
T ss_pred cccceecCccccc
Confidence 8999999987653
No 156
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.02 E-value=1e-08 Score=72.75 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=78.0
Q ss_pred cEEEEEecCCC---CCCceEEEEecCCCCCcchhh--HHHHHHHhcCCcEEEEecc--ccC---cCCCCCC-----CC--
Q 020630 41 KLFTQSFLPLD---QKVKATVYMTHGYGSDTGWMF--QKICISYATWGYAVFAADL--LGH---GRSDGIR-----CY-- 103 (323)
Q Consensus 41 ~l~~~~~~~~~---~~~~~~vv~~hG~~~~~~~~~--~~~~~~l~~~g~~vi~~d~--~G~---G~s~~~~-----~~-- 103 (323)
.+.+-+|.|+. +++-|++.++.|+.++..... .-+.+..+++|+.|+.+|- ||. |+++... ++
T Consensus 27 ~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYv 106 (283)
T KOG3101|consen 27 SMTFGVYLPPDAPRGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYV 106 (283)
T ss_pred ceEEEEecCCCcccCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEE
Confidence 77788888865 244689999999998754111 1233344567999999995 343 2222000 00
Q ss_pred CCC----------hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 104 LGD----------MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 104 ~~~----------~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
..+ .+-.++.+.+++.. ...+++..++.+.||||||.-|+..+.++|.+ .+++-..+|...
T Consensus 107 nAt~epw~~~yrMYdYv~kELp~~l~~--~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~k-ykSvSAFAPI~N 177 (283)
T KOG3101|consen 107 NATQEPWAKHYRMYDYVVKELPQLLNS--ANVPLDPLKVGIFGHSMGGHGALTIYLKNPSK-YKSVSAFAPICN 177 (283)
T ss_pred ecccchHhhhhhHHHHHHHHHHHHhcc--ccccccchhcceeccccCCCceEEEEEcCccc-ccceeccccccC
Confidence 001 11222333333332 23345677899999999999999999999988 888887777654
No 157
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=99.01 E-value=3.8e-08 Score=79.71 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcC
Q 020630 73 QKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 73 ~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 152 (323)
..+.-.|. .|+.|+.+.+. ..+....++++.......+++.+....+... +.+|+|.|.||+.++.+|+.+|
T Consensus 91 SevG~AL~-~GHPvYFV~F~------p~P~pgQTl~DV~~ae~~Fv~~V~~~hp~~~-kp~liGnCQgGWa~~mlAA~~P 162 (581)
T PF11339_consen 91 SEVGVALR-AGHPVYFVGFF------PEPEPGQTLEDVMRAEAAFVEEVAERHPDAP-KPNLIGNCQGGWAAMMLAALRP 162 (581)
T ss_pred cHHHHHHH-cCCCeEEEEec------CCCCCCCcHHHHHHHHHHHHHHHHHhCCCCC-CceEEeccHHHHHHHHHHhcCc
Confidence 34555564 48999888765 2222234899998888999999988876333 8899999999999999999999
Q ss_pred CCCeeEEEEccCccCCCC
Q 020630 153 PNTWTGLIFSAPLFVIPE 170 (323)
Q Consensus 153 ~~~v~~~il~~~~~~~~~ 170 (323)
+. +.-+|+.+++.+...
T Consensus 163 d~-~gplvlaGaPlsywa 179 (581)
T PF11339_consen 163 DL-VGPLVLAGAPLSYWA 179 (581)
T ss_pred Cc-cCceeecCCCccccc
Confidence 98 888998887776554
No 158
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.99 E-value=2e-08 Score=71.83 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=79.8
Q ss_pred ceEEEEecCCCCCc--chhhHHHHHHHhcCCcEEEEeccc----cCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCC
Q 020630 55 KATVYMTHGYGSDT--GWMFQKICISYATWGYAVFAADLL----GHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYR 128 (323)
Q Consensus 55 ~~~vv~~hG~~~~~--~~~~~~~~~~l~~~g~~vi~~d~~----G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~ 128 (323)
+-.|||+.|++..- ...-..+..+|.+.+|.++-+-++ |+|.+ ++.+-++|+..+++++.....
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCc--
Confidence 46899999998652 224577888999999999988876 34433 677778999999998876543
Q ss_pred CCCEEEEEechhHHHHHHHHhh--cCCCCeeEEEEccCccCCC
Q 020630 129 DLPAFLFGESMGGAATMLMYFQ--SEPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a~~--~p~~~v~~~il~~~~~~~~ 169 (323)
...|+|+|||.|+.=.+.+... .+.. |.+.|+.+|..+..
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~-iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRK-IRAAILQAPVSDRE 147 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHH-HHHHHHhCccchhh
Confidence 4589999999999998888733 3444 88889999887643
No 159
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.96 E-value=8.1e-08 Score=80.02 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=95.6
Q ss_pred ccCCccceeEEecCCC-cEEEEEecCCC---CCCceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCC
Q 020630 25 SQGVRNGKEYFETPNG-KLFTQSFLPLD---QKVKATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSDG 99 (323)
Q Consensus 25 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~---~~~~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~ 99 (323)
+.....++...+..|| +|.......++ .++.|++|..-|.-+.+ ...|....-.|.++||-......||=|+-..
T Consensus 414 p~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~ 493 (682)
T COG1770 414 PEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGR 493 (682)
T ss_pred hhHeEEEEEEEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccCh
Confidence 3334445666777899 77766554432 35678888877754432 2244555556788999888888898776542
Q ss_pred C---CCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCC
Q 020630 100 I---RCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 100 ~---~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~ 169 (323)
. .+....-..-..|+.+..++|..+.-.....++++|-|.||++.-.++...|+. ++++|+-.|+.+.-
T Consensus 494 ~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~l-f~~iiA~VPFVDvl 565 (682)
T COG1770 494 AWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDL-FAGIIAQVPFVDVL 565 (682)
T ss_pred HHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhh-hhheeecCCccchh
Confidence 1 111111111224555555666555444466899999999999999999999999 99999999887743
No 160
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.94 E-value=5.2e-08 Score=73.34 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=67.2
Q ss_pred EecCCC--CCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEe
Q 020630 60 MTHGYG--SDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGE 137 (323)
Q Consensus 60 ~~hG~~--~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~ 137 (323)
++|+.+ ++.. .|..+...|.. ++.|++++++|++.+.... .+.+.+++.+...+..... ..+++++||
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~l~~-~~~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~-----~~~~~l~g~ 71 (212)
T smart00824 2 CFPSTAAPSGPH-EYARLAAALRG-RRDVSALPLPGFGPGEPLP---ASADALVEAQAEAVLRAAG-----GRPFVLVGH 71 (212)
T ss_pred ccCCCCCCCcHH-HHHHHHHhcCC-CccEEEecCCCCCCCCCCC---CCHHHHHHHHHHHHHHhcC-----CCCeEEEEE
Confidence 445543 3333 78888888876 4999999999998765332 2566666655554443221 347999999
Q ss_pred chhHHHHHHHHhh---cCCCCeeEEEEccCcc
Q 020630 138 SMGGAATMLMYFQ---SEPNTWTGLIFSAPLF 166 (323)
Q Consensus 138 S~Gg~~a~~~a~~---~p~~~v~~~il~~~~~ 166 (323)
|+||.++..++.. .+.. +.+++++++..
T Consensus 72 s~Gg~~a~~~a~~l~~~~~~-~~~l~~~~~~~ 102 (212)
T smart00824 72 SSGGLLAHAVAARLEARGIP-PAAVVLLDTYP 102 (212)
T ss_pred CHHHHHHHHHHHHHHhCCCC-CcEEEEEccCC
Confidence 9999999988876 3455 88898887644
No 161
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.94 E-value=1.1e-08 Score=79.17 Aligned_cols=128 Identities=13% Similarity=0.026 Sum_probs=76.0
Q ss_pred cEEEEEecCCC---CCCceEEEEecCCCCCc-chhhHHHHHHHhcCC----cEEEEeccccCcCCCC---------CC-C
Q 020630 41 KLFTQSFLPLD---QKVKATVYMTHGYGSDT-GWMFQKICISYATWG----YAVFAADLLGHGRSDG---------IR-C 102 (323)
Q Consensus 41 ~l~~~~~~~~~---~~~~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g----~~vi~~d~~G~G~s~~---------~~-~ 102 (323)
...+.+|.|.+ .++-|+|+++||..... .+......+.+...| ..+++++..+.+.... .. .
T Consensus 7 ~~~~~VylP~~y~~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~~~~ 86 (251)
T PF00756_consen 7 DRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSRRAD 86 (251)
T ss_dssp EEEEEEEECTTGGTTTTEEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTCBCT
T ss_pred eEEEEEEECCCCCCCCCCEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccccccc
Confidence 67778887776 35569999999972111 112223333333332 3456666555441110 00 0
Q ss_pred CCCChHHHHhhH-HHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCC
Q 020630 103 YLGDMEKVAASS-LSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 103 ~~~~~~~~~~d~-~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~ 169 (323)
.......+.+.+ .+++..+..++.+...+..|+|+||||..|+.++.++|+. +.+++.++|.....
T Consensus 87 ~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~-F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 87 DSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDL-FGAVIAFSGALDPS 153 (251)
T ss_dssp STTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTT-ESEEEEESEESETT
T ss_pred cCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccc-cccccccCcccccc
Confidence 111122222222 2455555555543343489999999999999999999999 99999999876533
No 162
>COG3150 Predicted esterase [General function prediction only]
Probab=98.79 E-value=9.9e-07 Score=60.41 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=58.9
Q ss_pred EEEecCCCCCcchhhH-H-HHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 58 VYMTHGYGSDTGWMFQ-K-ICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~-~-~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
||++||+.++.. ... . +.+.+... . |-.+.+..... .+....++.+..+|...+.+ ...|+
T Consensus 2 ilYlHGFnSSP~-shka~l~~q~~~~~-~-------~~i~y~~p~l~--h~p~~a~~ele~~i~~~~~~------~p~iv 64 (191)
T COG3150 2 ILYLHGFNSSPG-SHKAVLLLQFIDED-V-------RDIEYSTPHLP--HDPQQALKELEKAVQELGDE------SPLIV 64 (191)
T ss_pred eEEEecCCCCcc-cHHHHHHHHHHhcc-c-------cceeeecCCCC--CCHHHHHHHHHHHHHHcCCC------CceEE
Confidence 799999998755 332 2 22333322 2 22333332222 26888889999999888754 57999
Q ss_pred EechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 136 GESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 136 G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
|-|+||+.|.+++.++. ++ .|+++|...
T Consensus 65 GssLGGY~At~l~~~~G---ir-av~~NPav~ 92 (191)
T COG3150 65 GSSLGGYYATWLGFLCG---IR-AVVFNPAVR 92 (191)
T ss_pred eecchHHHHHHHHHHhC---Ch-hhhcCCCcC
Confidence 99999999999999876 33 455566554
No 163
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.79 E-value=9.7e-07 Score=70.08 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=70.7
Q ss_pred CCceEEEEecCCCCCcc---h---hhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCC
Q 020630 53 KVKATVYMTHGYGSDTG---W---MFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEP 126 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~---~---~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~ 126 (323)
++.|+||++||+|-.-. . ....+...|. ...++++|+.-...- ..+ ..+..+..++.+..+++....+
T Consensus 120 k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~--~~~--~~yPtQL~qlv~~Y~~Lv~~~G 193 (374)
T PF10340_consen 120 KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSD--EHG--HKYPTQLRQLVATYDYLVESEG 193 (374)
T ss_pred CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccc--cCC--CcCchHHHHHHHHHHHHHhccC
Confidence 34699999999884322 0 1122333343 368899998754311 111 1345556677777777774433
Q ss_pred CCCCCEEEEEechhHHHHHHHHhhc----CCCCeeEEEEccCccCCC
Q 020630 127 YRDLPAFLFGESMGGAATMLMYFQS----EPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 127 ~~~~~~~l~G~S~Gg~~a~~~a~~~----p~~~v~~~il~~~~~~~~ 169 (323)
..+++|+|-|.||.+++.++... +..--+++|+++|+..+.
T Consensus 194 --~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 194 --NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred --CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 56899999999999999877541 111158999999998865
No 164
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.78 E-value=4.9e-06 Score=66.38 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=80.0
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcc-hhhHHHHHHHhcCCcEE--EEeccccCcCCCCCC----------------
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTG-WMFQKICISYATWGYAV--FAADLLGHGRSDGIR---------------- 101 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~-~~~~~~~~~l~~~g~~v--i~~d~~G~G~s~~~~---------------- 101 (323)
+|-|+..-....+.+..|+++.|+|++.. ..+..+.+.++++ |.| +.+++-|.|..+...
T Consensus 21 KLEyri~ydd~Ke~kaIvfiI~GfG~dan~~~~d~~r~~iA~~-fnvv~I~V~YHCf~~R~q~~A~~~~~~~D~~iLk~~ 99 (403)
T PF11144_consen 21 KLEYRISYDDEKEIKAIVFIIPGFGADANSNYLDFMREYIAKK-FNVVVISVNYHCFCNRPQYGAKFYFDDIDKEILKKS 99 (403)
T ss_pred eeeEEeecCCCCCceEEEEEeCCcCCCcchHHHHHHHHHHHHh-CCEEEEEeeeeheeeccccCchhcCCHHHHHHHHHH
Confidence 67788765555467889999999999864 2556777888876 655 556666665433100
Q ss_pred --------CCCC---ChHH-------------------------------------------HHhhHHHHHHHHHhhCCC
Q 020630 102 --------CYLG---DMEK-------------------------------------------VAASSLSFFKHVRHSEPY 127 (323)
Q Consensus 102 --------~~~~---~~~~-------------------------------------------~~~d~~~~i~~l~~~~~~ 127 (323)
.... .... .|-|+..++..+....+.
T Consensus 100 L~~i~i~~~~i~~~~~~~~~~~~L~~~I~~lK~~~~L~~d~kl~ls~tl~P~n~EYQN~GIMqAiD~INAl~~l~k~~~~ 179 (403)
T PF11144_consen 100 LEKINIDSESINTYDNAEQIYELLNQNITELKEQGILPQDYKLNLSCTLIPPNGEYQNFGIMQAIDIINALLDLKKIFPK 179 (403)
T ss_pred HHHcCccccccccchhHHHHHHHHHHHHHHHHhcCCCCCCcEEeEEEEecCCchhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence 0000 1111 122333444444443332
Q ss_pred CC--CCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 128 RD--LPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 128 ~~--~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
.. .|++++|+|.||++|...|.-.|-. +++++=-+++..
T Consensus 180 ~~~~lp~I~~G~s~G~yla~l~~k~aP~~-~~~~iDns~~~~ 220 (403)
T PF11144_consen 180 NGGGLPKIYIGSSHGGYLAHLCAKIAPWL-FDGVIDNSSYAL 220 (403)
T ss_pred ccCCCcEEEEecCcHHHHHHHHHhhCccc-eeEEEecCcccc
Confidence 22 4999999999999999999999998 888887766543
No 165
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=9e-08 Score=74.17 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=77.2
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCC--cEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCC
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWG--YAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDL 130 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g--~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~ 130 (323)
..+.++||+||+..+-...-...++...+.| ...+.+.+|..|.--+-.....+...-..+++.+|+.|..+.+ ..
T Consensus 114 ~~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~--~~ 191 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKP--VK 191 (377)
T ss_pred CCCeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCC--Cc
Confidence 3478999999998654323334444444444 4678889997775432221112444556889999999998876 66
Q ss_pred CEEEEEechhHHHHHHHHhh--------cCCCCeeEEEEccCccC
Q 020630 131 PAFLFGESMGGAATMLMYFQ--------SEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~--------~p~~~v~~~il~~~~~~ 167 (323)
+++|++||||.+++++...+ .+.+ |+-+|+.+|-.+
T Consensus 192 ~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~k-i~nViLAaPDiD 235 (377)
T COG4782 192 RIYLLAHSMGTWLLMEALRQLAIRADRPLPAK-IKNVILAAPDID 235 (377)
T ss_pred eEEEEEecchHHHHHHHHHHHhccCCcchhhh-hhheEeeCCCCC
Confidence 89999999999999987765 1234 788888887655
No 166
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.75 E-value=3.6e-08 Score=84.13 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=75.6
Q ss_pred cEEEEEecCCC---CCCceEEEEecCCCCC---cchhhHHHHHHHhcC--CcEEEEeccc-c---CcCCCCCCCCCCChH
Q 020630 41 KLFTQSFLPLD---QKVKATVYMTHGYGSD---TGWMFQKICISYATW--GYAVFAADLL-G---HGRSDGIRCYLGDME 108 (323)
Q Consensus 41 ~l~~~~~~~~~---~~~~~~vv~~hG~~~~---~~~~~~~~~~~l~~~--g~~vi~~d~~-G---~G~s~~~~~~~~~~~ 108 (323)
-|+..+|.|.. .+..|+||++||.+.. .. .+ ....|+.. |+.|+++++| | +..+... .. ...
T Consensus 78 cl~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~-~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~-~~--~~n 151 (493)
T cd00312 78 CLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGS-LY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI-EL--PGN 151 (493)
T ss_pred CCeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCC-CC--ChHHHHhcCCCEEEEEecccccccccccCCCC-CC--Ccc
Confidence 57777887764 2457999999997532 22 11 12334333 3999999999 3 3222211 10 111
Q ss_pred HHHhhHHHHHHHHHhh---CCCCCCCEEEEEechhHHHHHHHHhhc--CCCCeeEEEEccCccC
Q 020630 109 KVAASSLSFFKHVRHS---EPYRDLPAFLFGESMGGAATMLMYFQS--EPNTWTGLIFSAPLFV 167 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~---~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~v~~~il~~~~~~ 167 (323)
.-..|...++++++.. .+.+..+|.|+|+|.||..+..++... +.. ++++|+.++...
T Consensus 152 ~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~l-f~~~i~~sg~~~ 214 (493)
T cd00312 152 YGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGL-FHRAISQSGSAL 214 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHH-HHHHhhhcCCcc
Confidence 2235666666666554 345678999999999999998887762 344 888888876554
No 167
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=98.74 E-value=2.9e-07 Score=70.61 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=114.7
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEe
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGE 137 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~ 137 (323)
+|++=||.+...-......+...+.|++++.+-.+-....... ......++.+.+.+....... ..++.+-.+
T Consensus 2 lvvl~gW~gA~~~hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~---~~~il~H~F 74 (240)
T PF05705_consen 2 LVVLLGWMGAKPKHLAKYSDLYQDPGFDILLVTSPPADFFWPS----KRLAPAADKLLELLSDSQSAS---PPPILFHSF 74 (240)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEeCCHHHHeeec----cchHHHHHHHHHHhhhhccCC---CCCEEEEEE
Confidence 5666677655433566666667678999999876532222111 134444444444444333221 138999999
Q ss_pred chhHHHHHHHHhh-----c----CCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccccccCCCcccccccccCh
Q 020630 138 SMGGAATMLMYFQ-----S----EPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDP 208 (323)
Q Consensus 138 S~Gg~~a~~~a~~-----~----p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
|.||...+..... . .-.+++++|+-+++......... . .+...+......+. ..............
T Consensus 75 SnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~-~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (240)
T PF05705_consen 75 SNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSA-R---AFSAALPKSSPRWF-VPLWPLLQFLLRLS 149 (240)
T ss_pred ECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHH-H---HHHHHcCccchhhH-HHHHHHHHHHHHHH
Confidence 9988776655431 1 11128888887766543321111 0 11000100000000 00000000000000
Q ss_pred hhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhc--CCCCcEEEecC
Q 020630 209 EKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKAS--SADKSIKIYDG 286 (323)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 286 (323)
...... .... .......+... ........+|-++++++.|.+++.+..++..+... +-+++...+++
T Consensus 150 ~~~~~~-------~~~~--~~~~~~~~~~~--~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~ 218 (240)
T PF05705_consen 150 IISYFI-------FGYP--DVQEYYRRALN--DFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFED 218 (240)
T ss_pred HHHHHH-------hcCC--cHHHHHHHHHh--hhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 000000 0000 00001111111 11223446899999999999999998888776652 34478888899
Q ss_pred CCccccccCCchhHHHHHHHHHHHH
Q 020630 287 MYHSLIQGEPDENANLVLKDMREWI 311 (323)
Q Consensus 287 ~gH~~~~~~~~~~~~~~~~~i~~fl 311 (323)
+.|..++ ...+++..+.+.+|+
T Consensus 219 S~HV~H~---r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 219 SPHVAHL---RKHPDRYWRAVDEFW 240 (240)
T ss_pred Cchhhhc---ccCHHHHHHHHHhhC
Confidence 9999996 344577778777763
No 168
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.72 E-value=7.1e-08 Score=72.31 Aligned_cols=94 Identities=11% Similarity=0.025 Sum_probs=51.8
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcC--CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCC
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATW--GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDL 130 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~--g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~ 130 (323)
++...|||+||+.++.. .|..+...+... .+.-..+...++.... ......++..++.+..-|............
T Consensus 2 ~~~hLvV~vHGL~G~~~-d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~--~~T~~gI~~~g~rL~~eI~~~~~~~~~~~~ 78 (217)
T PF05057_consen 2 KPVHLVVFVHGLWGNPA-DMRYLKNHLEKIPEDLPNARIVVLGYSNNE--FKTFDGIDVCGERLAEEILEHIKDYESKIR 78 (217)
T ss_pred CCCEEEEEeCCCCCCHH-HHHHHHHHHHHhhhhcchhhhhhhcccccc--cccchhhHHHHHHHHHHHHHhccccccccc
Confidence 34679999999999976 677666666541 1221122222221111 111124555555544333333322221134
Q ss_pred CEEEEEechhHHHHHHHHh
Q 020630 131 PAFLFGESMGGAATMLMYF 149 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~ 149 (323)
++.+|||||||.++-.+..
T Consensus 79 ~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 79 KISFIGHSLGGLIARYALG 97 (217)
T ss_pred cceEEEecccHHHHHHHHH
Confidence 8999999999999876554
No 169
>PLN02606 palmitoyl-protein thioesterase
Probab=98.72 E-value=2.5e-06 Score=65.43 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=68.8
Q ss_pred ceEEEEecCCCC--CcchhhHHHHHHHhc-CCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCC
Q 020630 55 KATVYMTHGYGS--DTGWMFQKICISYAT-WGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLP 131 (323)
Q Consensus 55 ~~~vv~~hG~~~--~~~~~~~~~~~~l~~-~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~ 131 (323)
..+||+.||+|. +.. ....+.+.+.+ .|+.+.++. .|-+. .........+.++.+.+.+...... ..-
T Consensus 26 ~~PvViwHGlgD~~~~~-~~~~~~~~i~~~~~~pg~~v~-ig~~~---~~s~~~~~~~Qv~~vce~l~~~~~L----~~G 96 (306)
T PLN02606 26 SVPFVLFHGFGGECSNG-KVSNLTQFLINHSGYPGTCVE-IGNGV---QDSLFMPLRQQASIACEKIKQMKEL----SEG 96 (306)
T ss_pred CCCEEEECCCCcccCCc-hHHHHHHHHHhCCCCCeEEEE-ECCCc---ccccccCHHHHHHHHHHHHhcchhh----cCc
Confidence 458999999994 344 56677777742 366555554 23221 1222235566666665555553333 335
Q ss_pred EEEEEechhHHHHHHHHhhcCC-CCeeEEEEccCccC
Q 020630 132 AFLFGESMGGAATMLMYFQSEP-NTWTGLIFSAPLFV 167 (323)
Q Consensus 132 ~~l~G~S~Gg~~a~~~a~~~p~-~~v~~~il~~~~~~ 167 (323)
++++|+|.||.++-.++.+.|+ .+|+.+|.+++.-.
T Consensus 97 ~naIGfSQGglflRa~ierc~~~p~V~nlISlggph~ 133 (306)
T PLN02606 97 YNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGPHA 133 (306)
T ss_pred eEEEEEcchhHHHHHHHHHCCCCCCcceEEEecCCcC
Confidence 9999999999999999999877 45999998876543
No 170
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.70 E-value=6.4e-07 Score=71.29 Aligned_cols=71 Identities=25% Similarity=0.375 Sum_probs=55.1
Q ss_pred CCccc-ccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 244 FSKVT-VPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 244 ~~~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
+.++. +|+|+++|.+|..+|...+..++........+...+++++|....... ...++..+.+.+|+.+.+
T Consensus 227 ~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~-~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 227 AEKISPRPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNP-PAVEQALDKLAEFLERHL 298 (299)
T ss_pred HhhcCCcceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCcc-HHHHHHHHHHHHHHHHhc
Confidence 34444 799999999999999999999998885434678888889999884332 334578888999998764
No 171
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.66 E-value=6.1e-07 Score=75.19 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=78.1
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcc-hhhHHHHHHHhcC-CcEEEEeccccCcCCCCCCC------CCCChHHHHh
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTG-WMFQKICISYATW-GYAVFAADLLGHGRSDGIRC------YLGDMEKVAA 112 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~-~~~~~~~~~l~~~-g~~vi~~d~~G~G~s~~~~~------~~~~~~~~~~ 112 (323)
+.+|+....--.+++|++|++.|=+.-.. +....+...|+++ |-.+++++.|-+|.|.+... ...+.++..+
T Consensus 15 ~qRY~~n~~~~~~~gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALa 94 (434)
T PF05577_consen 15 SQRYWVNDQYYKPGGPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALA 94 (434)
T ss_dssp EEEEEEE-TT--TTSEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHH
T ss_pred EEEEEEEhhhcCCCCCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHH
Confidence 55665543221233677777755442211 1222234445543 77899999999999974321 1237899999
Q ss_pred hHHHHHHHHHhhCC-CCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 113 SSLSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 113 d~~~~i~~l~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
|+..++++++.+.. ....|++++|-|+||.+|..+-.++|+. |.+.+..+++..
T Consensus 95 D~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~-~~ga~ASSapv~ 149 (434)
T PF05577_consen 95 DLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHL-FDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT--SEEEEET--CC
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCe-eEEEEeccceee
Confidence 99999999996642 2356999999999999999999999999 999998877654
No 172
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.62 E-value=1.5e-07 Score=75.36 Aligned_cols=104 Identities=19% Similarity=0.189 Sum_probs=74.6
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcE---EEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCC
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYA---VFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLP 131 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~---vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~ 131 (323)
.-+++++||++.+.. .|..+...+...|+. ++.+++++- .. ........+++..-+.+++...+ ..+
T Consensus 59 ~~pivlVhG~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~--~~~~~~~~~ql~~~V~~~l~~~g------a~~ 128 (336)
T COG1075 59 KEPIVLVHGLGGGYG-NFLPLDYRLAILGWLTNGVYAFELSGG-DG--TYSLAVRGEQLFAYVDEVLAKTG------AKK 128 (336)
T ss_pred CceEEEEccCcCCcc-hhhhhhhhhcchHHHhccccccccccc-CC--CccccccHHHHHHHHHHHHhhcC------CCc
Confidence 458999999976666 777777777777887 888888865 11 11111134555555555555554 348
Q ss_pred EEEEEechhHHHHHHHHhhcC--CCCeeEEEEccCccCCC
Q 020630 132 AFLFGESMGGAATMLMYFQSE--PNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 132 ~~l~G~S~Gg~~a~~~a~~~p--~~~v~~~il~~~~~~~~ 169 (323)
+.++||||||.++..++...+ .+ |+.++.++++-...
T Consensus 129 v~LigHS~GG~~~ry~~~~~~~~~~-V~~~~tl~tp~~Gt 167 (336)
T COG1075 129 VNLIGHSMGGLDSRYYLGVLGGANR-VASVVTLGTPHHGT 167 (336)
T ss_pred eEEEeecccchhhHHHHhhcCccce-EEEEEEeccCCCCc
Confidence 999999999999999888877 67 99999988765433
No 173
>PLN02209 serine carboxypeptidase
Probab=98.61 E-value=3.2e-05 Score=64.09 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=83.8
Q ss_pred eEEecC--CC-cEEEEEecCCC-CCCceEEEEecCCCCCcchhhHHHHH----------------HH-------hcCCcE
Q 020630 33 EYFETP--NG-KLFTQSFLPLD-QKVKATVYMTHGYGSDTGWMFQKICI----------------SY-------ATWGYA 85 (323)
Q Consensus 33 ~~~~~~--~g-~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~~~~~~~~----------------~l-------~~~g~~ 85 (323)
.++... .+ .++|..+.... ....|+|+++-|.++.++ .+..+.+ .| .+ -.+
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS-~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~an 119 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSC-LSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK-TAN 119 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHH-hhhHHHhcCCceeccCCCCCCcccceeCCCchhh-cCc
Confidence 344443 35 77877776543 245799999999987654 3322111 11 12 257
Q ss_pred EEEeccc-cCcCCCCCCC-CCCChHHHHhhHHHHHHHHHhhCC-CCCCCEEEEEechhHHHHHHHHhh----c-----CC
Q 020630 86 VFAADLL-GHGRSDGIRC-YLGDMEKVAASSLSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQ----S-----EP 153 (323)
Q Consensus 86 vi~~d~~-G~G~s~~~~~-~~~~~~~~~~d~~~~i~~l~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~----~-----p~ 153 (323)
++-+|.| |.|.|-.... ...+-++.++|+..+++..-...+ ....+++|.|.|+||..+-.+|.. . +.
T Consensus 120 llfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~ 199 (437)
T PLN02209 120 IIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPP 199 (437)
T ss_pred EEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCc
Confidence 8999954 8888854322 112334456788887777655544 335689999999999866666543 1 12
Q ss_pred CCeeEEEEccCccCC
Q 020630 154 NTWTGLIFSAPLFVI 168 (323)
Q Consensus 154 ~~v~~~il~~~~~~~ 168 (323)
-.++++++.++..+.
T Consensus 200 inl~Gi~igng~td~ 214 (437)
T PLN02209 200 INLQGYVLGNPITHI 214 (437)
T ss_pred eeeeeEEecCcccCh
Confidence 237899999887653
No 174
>COG0627 Predicted esterase [General function prediction only]
Probab=98.58 E-value=2.6e-06 Score=66.92 Aligned_cols=232 Identities=15% Similarity=0.173 Sum_probs=118.2
Q ss_pred CCceEEEEecCCCCCc--chhhHHHHHHHhcCCcEEEEeccc--------------cCcCCCCC---C---CC-CCChHH
Q 020630 53 KVKATVYMTHGYGSDT--GWMFQKICISYATWGYAVFAADLL--------------GHGRSDGI---R---CY-LGDMEK 109 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~--~~~~~~~~~~l~~~g~~vi~~d~~--------------G~G~s~~~---~---~~-~~~~~~ 109 (323)
++-|+++++||..++. -+....+-+.....|+.++++|-. |-+.|--. . .. .+.+++
T Consensus 52 ~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~t 131 (316)
T COG0627 52 RDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWET 131 (316)
T ss_pred CCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhH
Confidence 4568999999998773 223344555555668888886432 22222100 0 00 123333
Q ss_pred H-HhhHHHHHHHHHhhCCCCC--CCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhccc
Q 020630 110 V-AASSLSFFKHVRHSEPYRD--LPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLF 186 (323)
Q Consensus 110 ~-~~d~~~~i~~l~~~~~~~~--~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (323)
+ .+++.+.++..... +. .+..++||||||.-|+.+|.++|++ ++.+...++........... .
T Consensus 132 fl~~ELP~~~~~~f~~---~~~~~~~aI~G~SMGG~GAl~lA~~~pd~-f~~~sS~Sg~~~~s~~~~~~------~---- 197 (316)
T COG0627 132 FLTQELPALWEAAFPA---DGTGDGRAIAGHSMGGYGALKLALKHPDR-FKSASSFSGILSPSSPWGPT------L---- 197 (316)
T ss_pred HHHhhhhHHHHHhcCc---ccccCCceeEEEeccchhhhhhhhhCcch-hceecccccccccccccccc------c----
Confidence 3 34555344332221 12 2678999999999999999999998 99999998887655332221 0
Q ss_pred ccccccccCCCcccccccccChhhHHHhhcCCcccCCCCCchhHHHHHHh-hHHHHhcCCcccccEEEEeeCCCcccC--
Q 020630 187 GLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMREIARV-CQYIQDNFSKVTVPFLTVHGTADGVTC-- 263 (323)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~i~g~~D~~~~-- 263 (323)
.+...+.......++..... ......++ ......+... ....... .....++++-+|..|.+..
T Consensus 198 ~~~~~~g~~~~~~~~G~~~~----~~w~~~D~--------~~~~~~l~~~~~~~~~~~-~~~~~~~~~d~g~ad~~~~~~ 264 (316)
T COG0627 198 AMGDPWGGKAFNAMLGPDSD----PAWQENDP--------LSLIEKLVANANTRIWVY-GGSPPELLIDNGPADFFLAAN 264 (316)
T ss_pred cccccccCccHHHhcCCCcc----ccccccCc--------hhHHHHhhhcccccceec-ccCCCccccccccchhhhhhc
Confidence 00000000000000000000 00000000 0000000000 0000011 1134567777888888764
Q ss_pred chhHHHHHHHhc--CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHhh
Q 020630 264 PTSSKLLYEKAS--SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVER 317 (323)
Q Consensus 264 ~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~ 317 (323)
....+.+.+++. +-+..+...++.+|... ++....+....|+...+..
T Consensus 265 ~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~------~w~~~l~~~~~~~a~~l~~ 314 (316)
T COG0627 265 NLSTRAFAEALRAAGIPNGVRDQPGGDHSWY------FWASQLADHLPWLAGALGL 314 (316)
T ss_pred ccCHHHHHHHHHhcCCCceeeeCCCCCcCHH------HHHHHHHHHHHHHHHHhcc
Confidence 333566666663 22345666677788776 4666778888888877643
No 175
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.9e-06 Score=63.70 Aligned_cols=251 Identities=12% Similarity=-0.011 Sum_probs=122.7
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhH-HHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhH----H
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQ-KICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS----L 115 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~-~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~----~ 115 (323)
+-++..+.|. +..+.-|++-|-|.+.. .-+ .+...+.++|...+.+.-|-+|....+......++.. .|+ .
T Consensus 101 ~A~~~~liPQ--K~~~KOG~~a~tgdh~y-~rr~~L~~p~~k~~i~tmvle~pfYgqr~p~~q~~~~Le~v-tDlf~mG~ 176 (371)
T KOG1551|consen 101 TARVAWLIPQ--KMADLCLSWALTGDHVY-TRRLVLSKPINKREIATMVLEKPFYGQRVPEEQIIHMLEYV-TDLFKMGR 176 (371)
T ss_pred ceeeeeeccc--CcCCeeEEEeecCCcee-EeeeeecCchhhhcchheeeecccccccCCHHHHHHHHHHH-HHHHHhhH
Confidence 4455556664 34566666666554432 212 3555666778899999999999876543322122222 221 1
Q ss_pred HHHHHHHh----hCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCCCCCchhHHHHHHhhcccccccc
Q 020630 116 SFFKHVRH----SEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADT 191 (323)
Q Consensus 116 ~~i~~l~~----~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (323)
+.|+.... .....-.++.++|-||||.+|..+...++.. |.-+=++++.......... .+......+.++...
T Consensus 177 A~I~E~~~lf~Ws~~~g~g~~~~~g~Smgg~~a~~vgS~~q~P-va~~p~l~~~~asvs~teg--~l~~~~s~~~~~~~~ 253 (371)
T KOG1551|consen 177 ATIQEFVKLFTWSSADGLGNLNLVGRSMGGDIANQVGSLHQKP-VATAPCLNSSKASVSATEG--LLLQDTSKMKRFNQT 253 (371)
T ss_pred HHHHHHHHhcccccccCcccceeeeeecccHHHHhhcccCCCC-ccccccccccccchhhhhh--hhhhhhHHHHhhccC
Confidence 22222221 1111245899999999999999988877665 5544444432211110000 000000001111000
Q ss_pred cccCCCcccccccccCh--hhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCccccc-----EEEEeeCCCcccCc
Q 020630 192 WAAMPDNKMVGKAIKDP--EKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVP-----FLTVHGTADGVTCP 264 (323)
Q Consensus 192 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-----~l~i~g~~D~~~~~ 264 (323)
. .......+.+ ........ ..+ ........+.+..-+--..+....+| +.++.+++|..+|.
T Consensus 254 ----t--~~~~~~~r~p~Q~~~~~~~~-~sr----n~~~E~~~~Mr~vmd~~T~v~~fp~Pvdpsl~ivv~A~~D~Yipr 322 (371)
T KOG1551|consen 254 ----T--NKSGYTSRNPAQSYHLLSKE-QSR----NSRKESLIFMRGVMDECTHVANFPVPVDPSLIIVVQAKEDAYIPR 322 (371)
T ss_pred ----c--chhhhhhhCchhhHHHHHHH-hhh----cchHHHHHHHHHHHHhhchhhcCCCCCCCCeEEEEEecCCccccc
Confidence 0 0000000000 00000000 000 00111111111111101112222333 57788999999999
Q ss_pred hhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHH
Q 020630 265 TSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERV 315 (323)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~ 315 (323)
.....+.+.. |++++..++ +||...+--. .+.+.+.|.+-|++..
T Consensus 323 ~gv~~lQ~~W--Pg~eVr~~e-gGHVsayl~k---~dlfRR~I~d~L~R~~ 367 (371)
T KOG1551|consen 323 TGVRSLQEIW--PGCEVRYLE-GGHVSAYLFK---QDLFRRAIVDGLDRLD 367 (371)
T ss_pred cCcHHHHHhC--CCCEEEEee-cCceeeeehh---chHHHHHHHHHHHhhh
Confidence 9899999888 889999999 5897754221 2446666777666544
No 176
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=98.53 E-value=6.5e-05 Score=62.32 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=82.1
Q ss_pred eeEEecC--CC-cEEEEEecCCC-CCCceEEEEecCCCCCcch--hhHHHHH-------------HH-------hcCCcE
Q 020630 32 KEYFETP--NG-KLFTQSFLPLD-QKVKATVYMTHGYGSDTGW--MFQKICI-------------SY-------ATWGYA 85 (323)
Q Consensus 32 ~~~~~~~--~g-~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~--~~~~~~~-------------~l-------~~~g~~ 85 (323)
..++... .+ .++|+.+.... ....|+||++-|.++.++. .+....+ .| .+ -.+
T Consensus 39 sGy~~v~~~~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~an 117 (433)
T PLN03016 39 TGYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK-MAN 117 (433)
T ss_pred EEEEEecCCCCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh-cCc
Confidence 4445443 35 78888776543 2457999999999876541 1111111 11 12 257
Q ss_pred EEEeccc-cCcCCCCCCCCCC-ChHHHHhhHHHHHHHHHhhCC-CCCCCEEEEEechhHHHHHHHHhh----c-----CC
Q 020630 86 VFAADLL-GHGRSDGIRCYLG-DMEKVAASSLSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQ----S-----EP 153 (323)
Q Consensus 86 vi~~d~~-G~G~s~~~~~~~~-~~~~~~~d~~~~i~~l~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~----~-----p~ 153 (323)
++-+|.| |.|.|........ +-.+.++++..++...-...+ ....+++|.|.|+||..+-.+|.. . +.
T Consensus 118 llfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~ 197 (433)
T PLN03016 118 IIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPP 197 (433)
T ss_pred EEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCc
Confidence 9999954 8998864332111 112334677766666544443 235689999999999876666543 1 22
Q ss_pred CCeeEEEEccCccCC
Q 020630 154 NTWTGLIFSAPLFVI 168 (323)
Q Consensus 154 ~~v~~~il~~~~~~~ 168 (323)
..++|+++.+|....
T Consensus 198 inLkGi~iGNg~t~~ 212 (433)
T PLN03016 198 INLQGYMLGNPVTYM 212 (433)
T ss_pred ccceeeEecCCCcCc
Confidence 248899999886543
No 177
>PLN02633 palmitoyl protein thioesterase family protein
Probab=98.51 E-value=5.9e-06 Score=63.51 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=69.5
Q ss_pred ceEEEEecCCCCCcc-hhhHHHHHHHhcC-CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCE
Q 020630 55 KATVYMTHGYGSDTG-WMFQKICISYATW-GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPA 132 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~-~~~~~~~~~l~~~-g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~ 132 (323)
..++|+.||+|.+.. .....+.+.+.+. |..+.++.. |.+ ....+.....+.++.+.+.+...... ..-+
T Consensus 25 ~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i---g~~-~~~s~~~~~~~Qve~vce~l~~~~~l----~~G~ 96 (314)
T PLN02633 25 SVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI---GNG-VGDSWLMPLTQQAEIACEKVKQMKEL----SQGY 96 (314)
T ss_pred CCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE---CCC-ccccceeCHHHHHHHHHHHHhhchhh----hCcE
Confidence 457899999997632 1445555555332 666666653 333 22333345666666666666654433 2359
Q ss_pred EEEEechhHHHHHHHHhhcCC-CCeeEEEEccCcc
Q 020630 133 FLFGESMGGAATMLMYFQSEP-NTWTGLIFSAPLF 166 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~~p~-~~v~~~il~~~~~ 166 (323)
+++|+|.||.++-.++.+.++ .+|+.+|.+++.-
T Consensus 97 naIGfSQGGlflRa~ierc~~~p~V~nlISlggph 131 (314)
T PLN02633 97 NIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGPH 131 (314)
T ss_pred EEEEEccchHHHHHHHHHCCCCCCcceEEEecCCC
Confidence 999999999999999999887 4599999887653
No 178
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=98.51 E-value=6.1e-05 Score=62.03 Aligned_cols=139 Identities=16% Similarity=0.117 Sum_probs=88.4
Q ss_pred ccceeEEecC--CC-cEEEEEecCCC-CCCceEEEEecCCCCCcchhhHHH---HHH--------Hhc------CCcEEE
Q 020630 29 RNGKEYFETP--NG-KLFTQSFLPLD-QKVKATVYMTHGYGSDTGWMFQKI---CIS--------YAT------WGYAVF 87 (323)
Q Consensus 29 ~~~~~~~~~~--~g-~l~~~~~~~~~-~~~~~~vv~~hG~~~~~~~~~~~~---~~~--------l~~------~g~~vi 87 (323)
.....++... .+ .|+|+.+.... +..+|.||++.|+++.++ ....+ .+. |.. +--+++
T Consensus 43 ~~ysGYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSS-l~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiL 121 (454)
T KOG1282|consen 43 KQYSGYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSS-LGGLFEENGPFRVKYNGKTLYLNPYSWNKEANIL 121 (454)
T ss_pred ccccceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccc-hhhhhhhcCCeEEcCCCCcceeCCccccccccEE
Confidence 3344555544 46 89999887654 345899999999987654 22111 111 110 114688
Q ss_pred Eeccc-cCcCCCCCCC--CCCChHHHHhhHHHHHHHHHhhCC-CCCCCEEEEEechhHHHHHHHHhh----c-----CCC
Q 020630 88 AADLL-GHGRSDGIRC--YLGDMEKVAASSLSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQ----S-----EPN 154 (323)
Q Consensus 88 ~~d~~-G~G~s~~~~~--~~~~~~~~~~d~~~~i~~l~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~----~-----p~~ 154 (323)
-+|.| |.|.|-.... ...+-+..++|+..++...-.+.| ....+++|.|-|++|...-.+|.. + |..
T Consensus 122 fLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~i 201 (454)
T KOG1282|consen 122 FLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNI 201 (454)
T ss_pred EEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcc
Confidence 88988 7777753322 223456667777776665555544 557799999999999776666643 2 223
Q ss_pred CeeEEEEccCccCC
Q 020630 155 TWTGLIFSAPLFVI 168 (323)
Q Consensus 155 ~v~~~il~~~~~~~ 168 (323)
+++|+++-+|..+.
T Consensus 202 NLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 202 NLKGYAIGNGLTDP 215 (454)
T ss_pred cceEEEecCcccCc
Confidence 48999998887653
No 179
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=98.49 E-value=5.9e-07 Score=68.24 Aligned_cols=107 Identities=15% Similarity=0.052 Sum_probs=55.5
Q ss_pred ceEEEEecCCCCCcc--hhhHHHHHHHhc--CCcEEEEeccccCcCC-CCCCCCCCChHHHHhhHHHHHHHHHhhCCCCC
Q 020630 55 KATVYMTHGYGSDTG--WMFQKICISYAT--WGYAVFAADLLGHGRS-DGIRCYLGDMEKVAASSLSFFKHVRHSEPYRD 129 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~--~~~~~~~~~l~~--~g~~vi~~d~~G~G~s-~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~ 129 (323)
..+||+.||+|.+.. ..+..+.+.+.+ -|--|.+++.- -+.+ +.......+..+.++.+.+.+.....- .
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig-~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L----~ 79 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIG-NDPSEDVENSFFGNVNDQVEQVCEQLANDPEL----A 79 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SS-SSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGG----T
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEEC-CCcchhhhhhHHHHHHHHHHHHHHHHhhChhh----h
Confidence 568999999996531 134444433332 26778888763 2211 111111123455555555555544333 2
Q ss_pred CCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 130 LPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 130 ~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
.-++++|+|.||.++-.++.+.++..|+.+|.+++.-
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph 116 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPH 116 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--T
T ss_pred cceeeeeeccccHHHHHHHHHCCCCCceeEEEecCcc
Confidence 3699999999999999999998776699999887643
No 180
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=98.42 E-value=3.5e-06 Score=61.70 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=49.9
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcE-EEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYA-VFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAF 133 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~-vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~ 133 (323)
+..|||..|+|++.. .+..+. + ..++. ++++|||..- ++ .| + .. .+++.
T Consensus 11 ~~LilfF~GWg~d~~-~f~hL~--~-~~~~D~l~~yDYr~l~-----------~d---~~-------~-~~----y~~i~ 60 (213)
T PF04301_consen 11 KELILFFAGWGMDPS-PFSHLI--L-PENYDVLICYDYRDLD-----------FD---FD-------L-SG----YREIY 60 (213)
T ss_pred CeEEEEEecCCCChH-Hhhhcc--C-CCCccEEEEecCcccc-----------cc---cc-------c-cc----CceEE
Confidence 579999999998866 444432 1 23455 4677887221 11 01 1 11 33899
Q ss_pred EEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 134 LFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 134 l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
|||+|||-.+|..+....| ++..|.+++..
T Consensus 61 lvAWSmGVw~A~~~l~~~~---~~~aiAINGT~ 90 (213)
T PF04301_consen 61 LVAWSMGVWAANRVLQGIP---FKRAIAINGTP 90 (213)
T ss_pred EEEEeHHHHHHHHHhccCC---cceeEEEECCC
Confidence 9999999999988766543 55666665543
No 181
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1e-05 Score=60.16 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=70.2
Q ss_pred eEEEEecCCCCCcc-hhhHHHHHHHhcC-CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEE
Q 020630 56 ATVYMTHGYGSDTG-WMFQKICISYATW-GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAF 133 (323)
Q Consensus 56 ~~vv~~hG~~~~~~-~~~~~~~~~l~~~-g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~ 133 (323)
.++|++||++.... .....+.+.+.+. |..|++.|. |-| . .........++++.+.+.+...... .+-++
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei-g~g--~-~~s~l~pl~~Qv~~~ce~v~~m~~l----sqGyn 95 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI-GDG--I-KDSSLMPLWEQVDVACEKVKQMPEL----SQGYN 95 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe-cCC--c-chhhhccHHHHHHHHHHHHhcchhc----cCceE
Confidence 57899999997643 2366677766655 888999985 344 1 1111123555555555555544333 44689
Q ss_pred EEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 134 LFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 134 l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
++|.|.||.++-.++...++.+|+..|.++++-
T Consensus 96 ivg~SQGglv~Raliq~cd~ppV~n~ISL~gPh 128 (296)
T KOG2541|consen 96 IVGYSQGGLVARALIQFCDNPPVKNFISLGGPH 128 (296)
T ss_pred EEEEccccHHHHHHHHhCCCCCcceeEeccCCc
Confidence 999999999999999887766699999877543
No 182
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.41 E-value=1.8e-06 Score=70.14 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=76.2
Q ss_pred cEEEEEecCC-CCCCceEEEEecCCCC---C-cchhhHHHHHHHhcCC-cEEEEecccc--CcCCCCC-----CCCCCCh
Q 020630 41 KLFTQSFLPL-DQKVKATVYMTHGYGS---D-TGWMFQKICISYATWG-YAVFAADLLG--HGRSDGI-----RCYLGDM 107 (323)
Q Consensus 41 ~l~~~~~~~~-~~~~~~~vv~~hG~~~---~-~~~~~~~~~~~l~~~g-~~vi~~d~~G--~G~s~~~-----~~~~~~~ 107 (323)
-|+..+|.|. ..++.|++|+|||.+- + +...|+ ...|+++| +-|+++++|- .|.-... .....+
T Consensus 79 CL~LNIwaP~~~a~~~PVmV~IHGG~y~~Gs~s~~~yd--gs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n- 155 (491)
T COG2272 79 CLYLNIWAPEVPAEKLPVMVYIHGGGYIMGSGSEPLYD--GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASN- 155 (491)
T ss_pred ceeEEeeccCCCCCCCcEEEEEeccccccCCCcccccC--hHHHHhcCCEEEEEeCcccccceeeehhhcccccccccc-
Confidence 4777888888 5566799999999753 2 221233 34577777 9999999982 2222111 111001
Q ss_pred HHHHhhHHHHHHHHHhh---CCCCCCCEEEEEechhHHHHHHHHhhcCC---CCeeEEEEccCccC
Q 020630 108 EKVAASSLSFFKHVRHS---EPYRDLPAFLFGESMGGAATMLMYFQSEP---NTWTGLIFSAPLFV 167 (323)
Q Consensus 108 ~~~~~d~~~~i~~l~~~---~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~~v~~~il~~~~~~ 167 (323)
--..|...+|++++.+ .+.|.+.|.|+|+|.||+.++.+.+. |. . ++++|+.++...
T Consensus 156 -~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGL-F~rAi~~Sg~~~ 218 (491)
T COG2272 156 -LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGL-FHRAIALSGAAS 218 (491)
T ss_pred -ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHH-HHHHHHhCCCCC
Confidence 1224555555555443 33457799999999999998887765 33 3 666777777664
No 183
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.40 E-value=2.2e-06 Score=74.35 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=70.4
Q ss_pred cEEEEEecCCCCC---CceEEEEecCCCCCcch---hhHHHHHHHhcCCcEEEEeccc----cCcCCCCCCCCCCChHHH
Q 020630 41 KLFTQSFLPLDQK---VKATVYMTHGYGSDTGW---MFQKICISYATWGYAVFAADLL----GHGRSDGIRCYLGDMEKV 110 (323)
Q Consensus 41 ~l~~~~~~~~~~~---~~~~vv~~hG~~~~~~~---~~~~~~~~l~~~g~~vi~~d~~----G~G~s~~~~~~~~~~~~~ 110 (323)
-|+..+|.|.... ..|++|+|||.+..... ....-...+++++.-||+++|| |+-.+...... .-.--
T Consensus 108 CL~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~--~gN~G 185 (535)
T PF00135_consen 108 CLYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP--SGNYG 185 (535)
T ss_dssp --EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH--BSTHH
T ss_pred HHHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC--chhhh
Confidence 4777888887643 35999999997643210 1122233455678999999999 33222211100 01122
Q ss_pred HhhHHHHHHHHHhh---CCCCCCCEEEEEechhHHHHHHHHhhc--CCCCeeEEEEccCccC
Q 020630 111 AASSLSFFKHVRHS---EPYRDLPAFLFGESMGGAATMLMYFQS--EPNTWTGLIFSAPLFV 167 (323)
Q Consensus 111 ~~d~~~~i~~l~~~---~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~v~~~il~~~~~~ 167 (323)
..|...+|++++.. .+.|+.+|.|+|+|.||..+..++... ... ++++|+.++...
T Consensus 186 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~L-F~raI~~SGs~~ 246 (535)
T PF00135_consen 186 LLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGL-FHRAILQSGSAL 246 (535)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTS-BSEEEEES--TT
T ss_pred hhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccc-cccccccccccc
Confidence 35666666666654 234577999999999999887766552 345 999999887544
No 184
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.38 E-value=1.8e-05 Score=63.36 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=93.7
Q ss_pred CCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEcc-CccCCCCCCchhHHHHHHhhcccccccccccCCCccccccc
Q 020630 126 PYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSA-PLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKA 204 (323)
Q Consensus 126 ~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (323)
++.-.+++|.|.|==|..++..|+. ..+ |++++-+. ...++.. .+......+...|.......
T Consensus 168 ~~~i~~FvV~GaSKRGWTtWltaa~-D~R-V~aivP~Vid~LN~~~---------~l~h~y~~yG~~ws~a~~dY----- 231 (367)
T PF10142_consen 168 GVNIEKFVVTGASKRGWTTWLTAAV-DPR-VKAIVPIVIDVLNMKA---------NLEHQYRSYGGNWSFAFQDY----- 231 (367)
T ss_pred CCCccEEEEeCCchHhHHHHHhhcc-Ccc-eeEEeeEEEccCCcHH---------HHHHHHHHhCCCCccchhhh-----
Confidence 3446699999999999999999995 344 88888543 2222111 11111111111222111110
Q ss_pred ccChhhHHHhhcCCcccCCCCCchhHHHHHHhhHHHHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEe
Q 020630 205 IKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIY 284 (323)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (323)
........... ..+..+....+ ......++++|.++|.|..|.+..+.....+.+.+++ ...+..+
T Consensus 232 ---------~~~gi~~~l~t---p~f~~L~~ivD-P~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G-~K~lr~v 297 (367)
T PF10142_consen 232 ---------YNEGITQQLDT---PEFDKLMQIVD-PYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG-EKYLRYV 297 (367)
T ss_pred ---------hHhCchhhcCC---HHHHHHHHhcC-HHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC-CeeEEeC
Confidence 00000000011 11111111111 1223356699999999999999999999999999976 4689999
Q ss_pred cCCCccccccCCchhHHHHHHHHHHHHHHHHhh
Q 020630 285 DGMYHSLIQGEPDENANLVLKDMREWIDERVER 317 (323)
Q Consensus 285 ~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~ 317 (323)
|+++|.... ..+.+.+..|+......
T Consensus 298 PN~~H~~~~-------~~~~~~l~~f~~~~~~~ 323 (367)
T PF10142_consen 298 PNAGHSLIG-------SDVVQSLRAFYNRIQNG 323 (367)
T ss_pred CCCCcccch-------HHHHHHHHHHHHHHHcC
Confidence 999999982 55788899999887644
No 185
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.32 E-value=1.5e-06 Score=56.49 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=55.7
Q ss_pred cccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHhhcCCCCC
Q 020630 248 TVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVERCGPKNC 323 (323)
Q Consensus 248 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~~~~~~~ 323 (323)
..|+|++.++.|+.+|.+.++.+.+.+ ++++++.+++.||..+. .....+.+.+.+||..-.....-+.|
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l--~~s~lvt~~g~gHg~~~----~~s~C~~~~v~~yl~~G~lP~~~~~C 103 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARL--PGSRLVTVDGAGHGVYA----GGSPCVDKAVDDYLLDGTLPADGTTC 103 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHC--CCceEEEEeccCcceec----CCChHHHHHHHHHHHcCCCCCCcCcC
Confidence 589999999999999999999999999 67899999999999984 22245778888888753333333444
No 186
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=98.31 E-value=1.3e-05 Score=59.54 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=66.6
Q ss_pred CCceEEEEecCCC--CCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCC--
Q 020630 53 KVKATVYMTHGYG--SDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYR-- 128 (323)
Q Consensus 53 ~~~~~vv~~hG~~--~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~-- 128 (323)
+++.+|=|+-|.. ....-.|+.+.+.|+++||.|++.-+.- | -++..-..+........++.+.......
T Consensus 15 ~P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~-t-----fDH~~~A~~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 15 RPKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV-T-----FDHQAIAREVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred CCCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC-C-----CcHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4577888888853 3344578999999999999999987641 0 0000011222233444555555443211
Q ss_pred CCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEcc
Q 020630 129 DLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSA 163 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~ 163 (323)
..+++-+|||+|+-+-+.+...++.. -++-|+++
T Consensus 89 ~lP~~~vGHSlGcklhlLi~s~~~~~-r~gniliS 122 (250)
T PF07082_consen 89 YLPVYGVGHSLGCKLHLLIGSLFDVE-RAGNILIS 122 (250)
T ss_pred cCCeeeeecccchHHHHHHhhhccCc-ccceEEEe
Confidence 24788899999999998888776654 46666665
No 187
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.8e-05 Score=67.73 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=66.2
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHh----------------cCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHH
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYA----------------TWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSF 117 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~----------------~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~ 117 (323)
++-+|+|++|..|+.. .-+.++.... ...|+.+++|+-+- - ..-+..+..+.++-+.++
T Consensus 88 sGIPVLFIPGNAGSyK-QvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe--~--tAm~G~~l~dQtEYV~dA 162 (973)
T KOG3724|consen 88 SGIPVLFIPGNAGSYK-QVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEE--F--TAMHGHILLDQTEYVNDA 162 (973)
T ss_pred CCceEEEecCCCCchH-HHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccch--h--hhhccHhHHHHHHHHHHH
Confidence 4679999999988754 3444433222 12356777776430 0 011112577777777777
Q ss_pred HHHHHhhCC----C---CCCCEEEEEechhHHHHHHHHhhc---CCCCeeEEEEccCccCCCC
Q 020630 118 FKHVRHSEP----Y---RDLPAFLFGESMGGAATMLMYFQS---EPNTWTGLIFSAPLFVIPE 170 (323)
Q Consensus 118 i~~l~~~~~----~---~~~~~~l~G~S~Gg~~a~~~a~~~---p~~~v~~~il~~~~~~~~~ 170 (323)
|+.+...+. . .+..|+++||||||.+|...+... ++. |.-++..+++...++
T Consensus 163 Ik~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~s-VntIITlssPH~a~P 224 (973)
T KOG3724|consen 163 IKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGS-VNTIITLSSPHAAPP 224 (973)
T ss_pred HHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccch-hhhhhhhcCcccCCC
Confidence 776654432 1 134599999999999998776542 333 555665665544433
No 188
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=98.28 E-value=5.4e-05 Score=57.18 Aligned_cols=119 Identities=7% Similarity=0.008 Sum_probs=81.8
Q ss_pred EEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHH
Q 020630 43 FTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVR 122 (323)
Q Consensus 43 ~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~ 122 (323)
++....+....+.|.|+++-...++.....+...+.|... ..|+..|+-....-+-..+. .+++++++.+.+.+..++
T Consensus 91 ~F~r~~~~~r~pdPkvLivapmsGH~aTLLR~TV~alLp~-~~vyitDW~dAr~Vp~~~G~-FdldDYIdyvie~~~~~G 168 (415)
T COG4553 91 HFERDMPDARKPDPKVLIVAPMSGHYATLLRGTVEALLPY-HDVYITDWVDARMVPLEAGH-FDLDDYIDYVIEMINFLG 168 (415)
T ss_pred hhhhccccccCCCCeEEEEecccccHHHHHHHHHHHhccc-cceeEeeccccceeecccCC-ccHHHHHHHHHHHHHHhC
Confidence 3344445444567899999888887654667777777765 78999998755444433333 389999999999999986
Q ss_pred hhCCCCCCCEEEEEechhHH-----HHHHHHhhcCCCCeeEEEEccCccCCCCC
Q 020630 123 HSEPYRDLPAFLFGESMGGA-----ATMLMYFQSEPNTWTGLIFSAPLFVIPEN 171 (323)
Q Consensus 123 ~~~~~~~~~~~l~G~S~Gg~-----~a~~~a~~~p~~~v~~~il~~~~~~~~~~ 171 (323)
. .+++++-|.-+. +++..+...|.. -..+++++++.+....
T Consensus 169 p-------~~hv~aVCQP~vPvLAAisLM~~~~~p~~-PssMtlmGgPIDaR~n 214 (415)
T COG4553 169 P-------DAHVMAVCQPTVPVLAAISLMEEDGDPNV-PSSMTLMGGPIDARKN 214 (415)
T ss_pred C-------CCcEEEEecCCchHHHHHHHHHhcCCCCC-CceeeeecCccccccC
Confidence 4 477888886554 333334445665 7889999887765443
No 189
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.24 E-value=8.4e-06 Score=66.91 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=63.8
Q ss_pred hhHHHHHHHhcCCcEE-----EE-eccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHH
Q 020630 71 MFQKICISYATWGYAV-----FA-ADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAAT 144 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~v-----i~-~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a 144 (323)
.|..+++.|.+.||.. .+ +|+|--- . ..++....+.+.|+...... ..+++|+||||||.++
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~------~---~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~ 133 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSP------A---ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVA 133 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhch------h---hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHH
Confidence 7889999999888742 22 6777211 0 34566777888887776543 5699999999999999
Q ss_pred HHHHhhcCC-----CCeeEEEEccCccCCC
Q 020630 145 MLMYFQSEP-----NTWTGLIFSAPLFVIP 169 (323)
Q Consensus 145 ~~~a~~~p~-----~~v~~~il~~~~~~~~ 169 (323)
..+....+. ..|+++|.++++....
T Consensus 134 ~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs 163 (389)
T PF02450_consen 134 RYFLQWMPQEEWKDKYIKRFISIGTPFGGS 163 (389)
T ss_pred HHHHHhccchhhHHhhhhEEEEeCCCCCCC
Confidence 998887643 2499999998876533
No 190
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00014 Score=57.69 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=74.3
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~ 120 (323)
.|..-.+....+++...-||+.|=|+-.. .-..+.+.|.++|+.|+.+|-.-+=.|.. +.++.++|+..+|+.
T Consensus 246 aLPV~e~~a~~~~sd~~av~~SGDGGWr~-lDk~v~~~l~~~gvpVvGvdsLRYfW~~r------tPe~~a~Dl~r~i~~ 318 (456)
T COG3946 246 ALPVVEVPAKPGNSDTVAVFYSGDGGWRD-LDKEVAEALQKQGVPVVGVDSLRYFWSER------TPEQIAADLSRLIRF 318 (456)
T ss_pred CCCceeeccCCCCcceEEEEEecCCchhh-hhHHHHHHHHHCCCceeeeehhhhhhccC------CHHHHHHHHHHHHHH
Confidence 34444443322234566777777665444 55678999999999999999554444432 688999999999999
Q ss_pred HHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC
Q 020630 121 VRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP 153 (323)
Q Consensus 121 l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~ 153 (323)
...+.. ..++.|+|+|+|+=+.-..-.+.|.
T Consensus 319 y~~~w~--~~~~~liGySfGADvlP~~~n~L~~ 349 (456)
T COG3946 319 YARRWG--AKRVLLIGYSFGADVLPFAYNRLPP 349 (456)
T ss_pred HHHhhC--cceEEEEeecccchhhHHHHHhCCH
Confidence 988765 7799999999999876655555444
No 191
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.15 E-value=3.9e-05 Score=60.86 Aligned_cols=105 Identities=14% Similarity=0.192 Sum_probs=77.1
Q ss_pred ceEEEEecCCCCCcchh------hHHHHHHHhcCCcEEEEeccccCcCCCCCCCC---------CCChHHHHhhHHHHHH
Q 020630 55 KATVYMTHGYGSDTGWM------FQKICISYATWGYAVFAADLLGHGRSDGIRCY---------LGDMEKVAASSLSFFK 119 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~------~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~---------~~~~~~~~~d~~~~i~ 119 (323)
+.+|+|.-|--++-.|. .-.+++.| +--+|..+.|-+|+|.+-... ..+.++..+|...+|.
T Consensus 80 ~gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~---~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~ 156 (492)
T KOG2183|consen 80 EGPIFFYTGNEGDIEWFANNTGFMWDLAPEL---KALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLT 156 (492)
T ss_pred CCceEEEeCCcccHHHHHhccchHHhhhHhh---CceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHH
Confidence 36888888876554321 12234433 567899999999999732111 1257788899999999
Q ss_pred HHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEcc
Q 020630 120 HVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSA 163 (323)
Q Consensus 120 ~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~ 163 (323)
.++.+..-...+|+++|-|+||+++..+=.++|.. |.|....+
T Consensus 157 ~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHi-v~GAlAaS 199 (492)
T KOG2183|consen 157 FLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHI-VLGALAAS 199 (492)
T ss_pred HHhhccccccCcEEEecCchhhHHHHHHHhcChhh-hhhhhhcc
Confidence 99988655567999999999999999999999998 66655444
No 192
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=98.14 E-value=0.00044 Score=55.36 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=57.8
Q ss_pred cEEEEeccc-cCcCCCCCCCCC-CChHHHHhhHHHHHHHHHhhCC-CCCCCEEEEEechhHHHHHHHHhh----c-----
Q 020630 84 YAVFAADLL-GHGRSDGIRCYL-GDMEKVAASSLSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQ----S----- 151 (323)
Q Consensus 84 ~~vi~~d~~-G~G~s~~~~~~~-~~~~~~~~d~~~~i~~l~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~----~----- 151 (323)
.+++-+|.| |.|.|-...... .+-++.++|+..+++.+-.+.+ ....+++|.|-|+||..+-.+|.. .
T Consensus 2 aNvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~ 81 (319)
T PLN02213 2 ANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 81 (319)
T ss_pred ccEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccC
Confidence 368999998 899886443211 1223445788777776655554 456789999999999877766653 1
Q ss_pred CCCCeeEEEEccCccCC
Q 020630 152 EPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 152 p~~~v~~~il~~~~~~~ 168 (323)
+.-.++|+++-++....
T Consensus 82 ~~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 82 PPINLQGYMLGNPVTYM 98 (319)
T ss_pred CceeeeEEEeCCCCCCc
Confidence 12238899998887654
No 193
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=9.8e-05 Score=53.06 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=68.2
Q ss_pred CCceEEEEecCCCCCcchhhH---------------HHHHHHhcCCcEEEEecccc---CcCCC-CCCCCCCChHHHHhh
Q 020630 53 KVKATVYMTHGYGSDTGWMFQ---------------KICISYATWGYAVFAADLLG---HGRSD-GIRCYLGDMEKVAAS 113 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~---------------~~~~~l~~~g~~vi~~d~~G---~G~s~-~~~~~~~~~~~~~~d 113 (323)
.+...+|++||.|--....|. ++++...+.||.|++.+--- +-++. .+..+..+..+ .
T Consensus 99 ~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~ve---h 175 (297)
T KOG3967|consen 99 NPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVE---H 175 (297)
T ss_pred CccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHH---H
Confidence 456799999998853221332 23445556799999987431 11111 12222222222 2
Q ss_pred HHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCC-CeeEEEEccCccCCCCCCchhH
Q 020630 114 SLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPN-TWTGLIFSAPLFVIPENMKPSK 176 (323)
Q Consensus 114 ~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~-~v~~~il~~~~~~~~~~~~~~~ 176 (323)
+.-+..++-.. .....+.++.||.||...+.+..++|+. +|.++.+.+++...+......+
T Consensus 176 ~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~~~~p~a~~~e~ 237 (297)
T KOG3967|consen 176 AKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSAMGSPQAKNKEY 237 (297)
T ss_pred HHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeecccccCchhcCccH
Confidence 22222222221 1255899999999999999999998752 3777777777655444333333
No 194
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.10 E-value=0.0002 Score=54.00 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=43.5
Q ss_pred HHHHhhHHHHHH-HHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 108 EKVAASSLSFFK-HVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 108 ~~~~~d~~~~i~-~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
+.+.+.+..-+. ++...+..+.++-.|+|||+||.+++.....+|+. +...++++|..-
T Consensus 114 ~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~-F~~y~~~SPSlW 173 (264)
T COG2819 114 DAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDC-FGRYGLISPSLW 173 (264)
T ss_pred HHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcch-hceeeeecchhh
Confidence 334444433333 33334555577899999999999999999999998 999999998653
No 195
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.95 E-value=0.00089 Score=51.44 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=69.3
Q ss_pred cEEEEEecCCC---CCCceEEEEecCCCCCcchhhHHHHHHHhcCC----cEEEEeccccCcCCCCCCCCCCChHHHHhh
Q 020630 41 KLFTQSFLPLD---QKVKATVYMTHGYGSDTGWMFQKICISYATWG----YAVFAADLLGHGRSDGIRCYLGDMEKVAAS 113 (323)
Q Consensus 41 ~l~~~~~~~~~---~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g----~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d 113 (323)
+..-.++.|.+ ..+.|++++.||-..........+.+.|...| -.++.+|+--.-. .....+..+.+.+.
T Consensus 81 ~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i~~~~dsli~~g~i~pai~vgid~~d~~~---R~~~~~~n~~~~~~ 157 (299)
T COG2382 81 ERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRIPRILDSLIAAGEIPPAILVGIDYIDVKK---RREELHCNEAYWRF 157 (299)
T ss_pred ceeEEEEeCCCCCccccccEEEEeccHHHHhcCChHHHHHHHHHcCCCCCceEEecCCCCHHH---HHHHhcccHHHHHH
Confidence 33444444443 24579999999854321111223344444332 3566666432100 00001122233333
Q ss_pred H-HHHHHHHHhhCCC--CCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 114 S-LSFFKHVRHSEPY--RDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 114 ~-~~~i~~l~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
+ .+++-++...++. ....-+|+|.|+||.+++..+..+|+. +..++..+|...
T Consensus 158 L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~-FG~V~s~Sps~~ 213 (299)
T COG2382 158 LAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPER-FGHVLSQSGSFW 213 (299)
T ss_pred HHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchh-hceeeccCCccc
Confidence 2 3345555555542 233568999999999999999999999 988888887654
No 196
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=97.84 E-value=4.3e-05 Score=44.13 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=28.7
Q ss_pred cccccCCccceeEEecCCC-cEEEEEecCCC-----CCCceEEEEecCCCCCcchhh
Q 020630 22 YYTSQGVRNGKEYFETPNG-KLFTQSFLPLD-----QKVKATVYMTHGYGSDTGWMF 72 (323)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~-----~~~~~~vv~~hG~~~~~~~~~ 72 (323)
+....+.+.+++.+++.|| -|...+..+.. ...+|+|++.||+.+++. .|
T Consensus 4 ~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~-~w 59 (63)
T PF04083_consen 4 LIEKHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSD-DW 59 (63)
T ss_dssp HHHHTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GG-GG
T ss_pred HHHHcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChH-HH
Confidence 4456788899999999999 77666654432 356899999999998876 44
No 197
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.83 E-value=0.00039 Score=56.91 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=82.2
Q ss_pred CceEEEEecCCCCCc-chhh---HHHHHHHhcCCcEEEEeccccCcCCCCCCCC------CCChHHHHhhHHHHHHHHHh
Q 020630 54 VKATVYMTHGYGSDT-GWMF---QKICISYATWGYAVFAADLLGHGRSDGIRCY------LGDMEKVAASSLSFFKHVRH 123 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~-~~~~---~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~------~~~~~~~~~d~~~~i~~l~~ 123 (323)
.+|..|+|-|=|.-. .|.- ..+...-.+.|-.|+..+.|-+|.|...... ..+..+...|+..+|+.+..
T Consensus 85 ~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~ 164 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNA 164 (514)
T ss_pred CCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHh
Confidence 367888887754322 2210 1222223344889999999999988643322 12577888999999999999
Q ss_pred hCCCCCC-CEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 124 SEPYRDL-PAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 124 ~~~~~~~-~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
+.+.... +++.+|-|+-|.++..+=..+|+. +.+.|..+++..
T Consensus 165 k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel-~~GsvASSapv~ 208 (514)
T KOG2182|consen 165 KFNFSDDSKWITFGGSYSGSLSAWFREKYPEL-TVGSVASSAPVL 208 (514)
T ss_pred hcCCCCCCCeEEECCCchhHHHHHHHHhCchh-heeeccccccee
Confidence 9865444 999999999999999999999999 888887766543
No 198
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.82 E-value=3.6e-05 Score=64.50 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=61.5
Q ss_pred hhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC-CCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHH
Q 020630 70 WMFQKICISYATWGYAVFAADLLGHGRSDGIRC-YLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMY 148 (323)
Q Consensus 70 ~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~-~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a 148 (323)
|.|..+++.|++.||. -.++.|...--.... .....+++...+...|+.+....+ +.+++|+||||||.+++.+.
T Consensus 156 ~vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~ng--gkKVVLV~HSMGglv~lyFL 231 (642)
T PLN02517 156 FVWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNG--GKKVVVVPHSMGVLYFLHFM 231 (642)
T ss_pred eeHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcC--CCeEEEEEeCCchHHHHHHH
Confidence 4678999999999996 344444332221110 011235666778888887765543 56999999999999999877
Q ss_pred hhcC--------------CCCeeEEEEccCccC
Q 020630 149 FQSE--------------PNTWTGLIFSAPLFV 167 (323)
Q Consensus 149 ~~~p--------------~~~v~~~il~~~~~~ 167 (323)
..-. ++.|++.|.++++..
T Consensus 232 ~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~l 264 (642)
T PLN02517 232 KWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPFL 264 (642)
T ss_pred HhccccccccCCcchHHHHHHHHHheecccccC
Confidence 6321 113788888877543
No 199
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.81 E-value=8.9e-05 Score=52.52 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=40.6
Q ss_pred hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC----CCeeEEEEccCcc
Q 020630 107 MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP----NTWTGLIFSAPLF 166 (323)
Q Consensus 107 ~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~----~~v~~~il~~~~~ 166 (323)
...+...+...++....+++ ..+++++|||+||.+|..++..... . +..++..+++.
T Consensus 7 ~~~~~~~i~~~~~~~~~~~p--~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~-~~~~~~fg~p~ 67 (153)
T cd00741 7 ARSLANLVLPLLKSALAQYP--DYKIHVTGHSLGGALAGLAGLDLRGRGLGR-LVRVYTFGPPR 67 (153)
T ss_pred HHHHHHHHHHHHHHHHHHCC--CCeEEEEEcCHHHHHHHHHHHHHHhccCCC-ceEEEEeCCCc
Confidence 44556667777776665444 5689999999999999998887644 3 55666666554
No 200
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.71 E-value=0.003 Score=45.30 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=71.2
Q ss_pred EEecCCCCCCceEEEEecCCCCCcchhhH-------HHH----HHH--hcCCcEEEEeccccCcCCCC-C--CCCCCChH
Q 020630 45 QSFLPLDQKVKATVYMTHGYGSDTGWMFQ-------KIC----ISY--ATWGYAVFAADLLGHGRSDG-I--RCYLGDME 108 (323)
Q Consensus 45 ~~~~~~~~~~~~~vv~~hG~~~~~~~~~~-------~~~----~~l--~~~g~~vi~~d~~G~G~s~~-~--~~~~~~~~ 108 (323)
..++..+ ....+.++++|.+.+...... .+. ..+ ...+=.|-++-+.||---.. . ......-+
T Consensus 10 va~GD~d-~A~~Vav~VPG~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vAvV~WlgYdaP~~~~~~a~~~~~A~ 88 (177)
T PF06259_consen 10 VAVGDPD-TADHVAVLVPGTGTTLDSFLGGMDDEARALRAAAARAARAAGPGGSVAVVAWLGYDAPAGGLPDAASPGYAR 88 (177)
T ss_pred EEECCcC-CcCeeEEEcCCCCCCcccccchhHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCCccccccCchHHH
Confidence 3445444 567799999999866421111 111 111 11222454544444432210 0 01111245
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCcc
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLF 166 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~ 166 (323)
.-+.++..+++.|.... ....++.++|||+|+.++-.++...+.. +..+|+++++.
T Consensus 89 ~ga~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~-vddvv~~GSPG 144 (177)
T PF06259_consen 89 AGAPRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLR-VDDVVLVGSPG 144 (177)
T ss_pred HHHHHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCC-cccEEEECCCC
Confidence 56678888888887765 2256899999999999999888775555 99999887654
No 201
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.59 E-value=0.00068 Score=51.68 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=39.7
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcC----CCCeeEEEEccCcc
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSE----PNTWTGLIFSAPLF 166 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p----~~~v~~~il~~~~~ 166 (323)
.+..+..++...+..+..+++ ..++++.|||+||.+|..++.... ...+..+.+-+|..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~p--~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 106 AYKSLYNQVLPELKSALKQYP--DYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHHHHHHHhhCC--CceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 445555666666666665554 668999999999999998877522 22266566655544
No 202
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.58 E-value=0.00026 Score=57.60 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=56.2
Q ss_pred hhhHHHHHHHhcCCcE------EEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHH
Q 020630 70 WMFQKICISYATWGYA------VFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAA 143 (323)
Q Consensus 70 ~~~~~~~~~l~~~g~~------vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~ 143 (323)
|.|..+++.|..-||. -..+|+|--- ... ...++....+...|+......+ .+|++|++|||||.+
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~---~~~---e~rd~yl~kLK~~iE~~~~~~G--~kkVvlisHSMG~l~ 195 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWRLSY---HNS---EERDQYLSKLKKKIETMYKLNG--GKKVVLISHSMGGLY 195 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchhhcc---CCh---hHHHHHHHHHHHHHHHHHHHcC--CCceEEEecCCccHH
Confidence 4788899999888886 3567777211 111 1356666777777877766654 579999999999999
Q ss_pred HHHHHhhcCC
Q 020630 144 TMLMYFQSEP 153 (323)
Q Consensus 144 a~~~a~~~p~ 153 (323)
.+.+...+++
T Consensus 196 ~lyFl~w~~~ 205 (473)
T KOG2369|consen 196 VLYFLKWVEA 205 (473)
T ss_pred HHHHHhcccc
Confidence 9999988776
No 203
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0047 Score=49.24 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=52.0
Q ss_pred CcccccEEEEeeCCCcccCchhHHHHHHHhc--CCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHHHhhc
Q 020630 245 SKVTVPFLTVHGTADGVTCPTSSKLLYEKAS--SADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVERC 318 (323)
Q Consensus 245 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~~~~~ 318 (323)
.....+.+.+.+..|.++|....+++.+... +-+++..-+.++-|..++ ..++....+...+|+.......
T Consensus 222 ~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~---r~~p~~y~~~~~~Fl~~~~~~~ 294 (350)
T KOG2521|consen 222 NELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHF---RSFPKTYLKKCSEFLRSVISSY 294 (350)
T ss_pred hcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeee---ccCcHHHHHHHHHHHHhccccc
Confidence 3346788899999999999999888866553 234555666778888875 3455778888999998776543
No 204
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.48 E-value=0.0057 Score=46.04 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc----CCCCeeEEEEccCcc
Q 020630 115 LSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS----EPNTWTGLIFSAPLF 166 (323)
Q Consensus 115 ~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~----p~~~v~~~il~~~~~ 166 (323)
.+.++.+.... ..++.+.|||.||.+|..+|... .++ |.++...+++.
T Consensus 72 ~~yl~~~~~~~---~~~i~v~GHSkGGnLA~yaa~~~~~~~~~r-I~~vy~fDgPG 123 (224)
T PF11187_consen 72 LAYLKKIAKKY---PGKIYVTGHSKGGNLAQYAAANCDDEIQDR-ISKVYSFDGPG 123 (224)
T ss_pred HHHHHHHHHhC---CCCEEEEEechhhHHHHHHHHHccHHHhhh-eeEEEEeeCCC
Confidence 34444444333 33699999999999999998873 335 88888777654
No 205
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.35 E-value=0.0011 Score=48.00 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=49.7
Q ss_pred cEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh------cCCCCee
Q 020630 84 YAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ------SEPNTWT 157 (323)
Q Consensus 84 ~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~------~p~~~v~ 157 (323)
..+..++||-..... .+..+...=+.++...|+....+.+ ..+++|+|+|.|+.++..++.. ..++ |.
T Consensus 40 ~~~~~V~YpA~~~~~---~y~~S~~~G~~~~~~~i~~~~~~CP--~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~-I~ 113 (179)
T PF01083_consen 40 VAVQGVEYPASLGPN---SYGDSVAAGVANLVRLIEEYAARCP--NTKIVLAGYSQGAMVVGDALSGDGLPPDVADR-IA 113 (179)
T ss_dssp EEEEE--S---SCGG---SCHHHHHHHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHTTSSHHHHHH-EE
T ss_pred eEEEecCCCCCCCcc---cccccHHHHHHHHHHHHHHHHHhCC--CCCEEEEecccccHHHHHHHHhccCChhhhhh-EE
Confidence 556667777432211 1222455556777888887777776 6799999999999999998876 2234 88
Q ss_pred EEEEccCcc
Q 020630 158 GLIFSAPLF 166 (323)
Q Consensus 158 ~~il~~~~~ 166 (323)
++++++-+.
T Consensus 114 avvlfGdP~ 122 (179)
T PF01083_consen 114 AVVLFGDPR 122 (179)
T ss_dssp EEEEES-TT
T ss_pred EEEEecCCc
Confidence 999887544
No 206
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.32 E-value=0.00064 Score=47.32 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=29.5
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
.+.+.+.+.+..+..+++ ..++++.|||+||.+|..++..
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 344455566666665554 4689999999999999988876
No 207
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0015 Score=53.84 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=72.7
Q ss_pred EEEecC-CCCCCceEEEEecCCCCCcchhhHHHHH-------------------HHhcCCcEEEEec-cccCcCCCC-CC
Q 020630 44 TQSFLP-LDQKVKATVYMTHGYGSDTGWMFQKICI-------------------SYATWGYAVFAAD-LLGHGRSDG-IR 101 (323)
Q Consensus 44 ~~~~~~-~~~~~~~~vv~~hG~~~~~~~~~~~~~~-------------------~l~~~g~~vi~~d-~~G~G~s~~-~~ 101 (323)
++.+.+ .+..++|+|+++.|.++.++ .+..+.+ .+.+. -.++-+| .-|.|.|.. ..
T Consensus 89 fy~fe~~ndp~~rPvi~wlNGGPGcSS-~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a~~~ 166 (498)
T COG2939 89 FYTFESPNDPANRPVIFWLNGGPGCSS-VTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRALGD 166 (498)
T ss_pred EEEecCCCCCCCCceEEEecCCCChHh-hhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCccccccc
Confidence 333433 44456899999999998776 5544422 11111 3688999 558898874 22
Q ss_pred CCCCChHHHHhhHHHHHHHHHhhCC---CCCCCEEEEEechhHHHHHHHHhhcCC---CCeeEEEEccCcc
Q 020630 102 CYLGDMEKVAASSLSFFKHVRHSEP---YRDLPAFLFGESMGGAATMLMYFQSEP---NTWTGLIFSAPLF 166 (323)
Q Consensus 102 ~~~~~~~~~~~d~~~~i~~l~~~~~---~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~~v~~~il~~~~~ 166 (323)
....++....+|+..+.+.+....+ -...+.+|+|-|+||.-+-.+|..--+ . .++++++++..
T Consensus 167 e~~~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~-~~~~~nlssvl 236 (498)
T COG2939 167 EKKKDFEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIA-LNGNVNLSSVL 236 (498)
T ss_pred ccccchhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccc-cCCceEeeeee
Confidence 2233566666776666655544322 113489999999999988777764221 2 45555555443
No 208
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=97.15 E-value=0.002 Score=51.81 Aligned_cols=106 Identities=13% Similarity=-0.018 Sum_probs=82.6
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCC--CChHHHHhhHHHHHHHHHhhCCCCCC
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYL--GDMEKVAASSLSFFKHVRHSEPYRDL 130 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~--~~~~~~~~d~~~~i~~l~~~~~~~~~ 130 (323)
..+|+|+..-|++.............|. -+-+.+++|-+|.|...+... .++.+.+.|...+++.++.-+ .+
T Consensus 61 ~drPtV~~T~GY~~~~~p~r~Ept~Lld---~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY---~~ 134 (448)
T PF05576_consen 61 FDRPTVLYTEGYNVSTSPRRSEPTQLLD---GNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIY---PG 134 (448)
T ss_pred CCCCeEEEecCcccccCccccchhHhhc---cceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhc---cC
Confidence 4489999999998764323334554442 467999999999998654321 278999999999999998877 56
Q ss_pred CEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCc
Q 020630 131 PAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPL 165 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~ 165 (323)
+.+--|.|-||+.++.+=.-+|+. |++.|.--++
T Consensus 135 kWISTG~SKGGmTa~y~rrFyP~D-VD~tVaYVAP 168 (448)
T PF05576_consen 135 KWISTGGSKGGMTAVYYRRFYPDD-VDGTVAYVAP 168 (448)
T ss_pred CceecCcCCCceeEEEEeeeCCCC-CCeeeeeecc
Confidence 899999999999999888889998 9998864433
No 209
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.15 E-value=0.0035 Score=54.69 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=67.7
Q ss_pred cEEEEEecCCCCCC--ceEEEEecCCCCCcch--hh--HHHHHHHhcCCcEEEEeccc----cCcCCCCCC-CCCCChHH
Q 020630 41 KLFTQSFLPLDQKV--KATVYMTHGYGSDTGW--MF--QKICISYATWGYAVFAADLL----GHGRSDGIR-CYLGDMEK 109 (323)
Q Consensus 41 ~l~~~~~~~~~~~~--~~~vv~~hG~~~~~~~--~~--~~~~~~l~~~g~~vi~~d~~----G~G~s~~~~-~~~~~~~~ 109 (323)
-|+.-+|.|..... .|++|++||.+..... .+ ......+..+..-|+.+.+| |+....... .....+.
T Consensus 96 CLylNV~tp~~~~~~~~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~- 174 (545)
T KOG1516|consen 96 CLYLNVYTPQGCSESKLPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLF- 174 (545)
T ss_pred CceEEEeccCCCccCCCCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHH-
Confidence 56777787776332 6999999998643210 12 11222333445778888887 222221111 1111222
Q ss_pred HHhhHHHHHHHHHhh---CCCCCCCEEEEEechhHHHHHHHHhhc--CCCCeeEEEEccCcc
Q 020630 110 VAASSLSFFKHVRHS---EPYRDLPAFLFGESMGGAATMLMYFQS--EPNTWTGLIFSAPLF 166 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~---~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~v~~~il~~~~~ 166 (323)
|...++++++.. .+.+..+|.|+|||.||..+..+.... ... +.++|..++..
T Consensus 175 ---Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~L-F~~aI~~SG~~ 232 (545)
T KOG1516|consen 175 ---DQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGL-FHKAISMSGNA 232 (545)
T ss_pred ---HHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHH-HHHHHhhcccc
Confidence 444455554443 234578999999999999987766541 123 55566555543
No 210
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0038 Score=43.51 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=64.3
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcch----hhHHHHHHHhcCCc-EEEEeccccCcCCCCCCCCCCChHHHHhhHH
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGW----MFQKICISYATWGY-AVFAADLLGHGRSDGIRCYLGDMEKVAASSL 115 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~----~~~~~~~~l~~~g~-~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~ 115 (323)
.+.+..|+..+ .|+|||-.-.|....+ .-..++..+ +.|. ..++++ |-...+--.... +..+.++--.
T Consensus 16 dMel~ryGHaG---~pVvvFpts~Grf~eyed~G~v~ala~fi-e~G~vQlft~~--gldsESf~a~h~-~~adr~~rH~ 88 (227)
T COG4947 16 DMELNRYGHAG---IPVVVFPTSGGRFNEYEDFGMVDALASFI-EEGLVQLFTLS--GLDSESFLATHK-NAADRAERHR 88 (227)
T ss_pred hhhhhhccCCC---CcEEEEecCCCcchhhhhcccHHHHHHHH-hcCcEEEEEec--ccchHhHhhhcC-CHHHHHHHHH
Confidence 55666777765 6777766554433221 112233333 3342 334443 332111111111 2223333333
Q ss_pred HHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 116 SFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 116 ~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
+.-+++..+.- ....++-|.||||+.|..+.-++|+. +.++|.+++.++
T Consensus 89 AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~l-ftkvialSGvYd 137 (227)
T COG4947 89 AYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHL-FTKVIALSGVYD 137 (227)
T ss_pred HHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhH-hhhheeecceee
Confidence 33333333321 33577899999999999999999999 999999998775
No 211
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=96.98 E-value=0.0031 Score=52.79 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=66.8
Q ss_pred CCcEEEEEecCCCCCCceEEEEecCCCCC---c---chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHh
Q 020630 39 NGKLFTQSFLPLDQKVKATVYMTHGYGSD---T---GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAA 112 (323)
Q Consensus 39 ~g~l~~~~~~~~~~~~~~~vv~~hG~~~~---~---~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~ 112 (323)
.|+=.|..|.++-..++-.|+-+||.|.- + +.+.+.++..| |..|+.+||--.-+.+-+. ..++
T Consensus 380 ~g~~~~~~wh~P~p~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL---~cPiiSVdYSLAPEaPFPR----aleE--- 449 (880)
T KOG4388|consen 380 NGQRSLELWHRPAPRSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQAL---GCPIISVDYSLAPEAPFPR----ALEE--- 449 (880)
T ss_pred cCccccccCCCCCCCCceEEEEecCCceeeeccccccHHHHHHHHHh---CCCeEEeeeccCCCCCCCc----HHHH---
Confidence 35344555655543556788999998742 1 21233344333 7999999986444333221 2222
Q ss_pred hHHHHHHHHHhh---CCCCCCCEEEEEechhHHHHHHHHhh---cCCCCeeEEEEccCccCCC
Q 020630 113 SSLSFFKHVRHS---EPYRDLPAFLFGESMGGAATMLMYFQ---SEPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 113 d~~~~i~~l~~~---~~~~~~~~~l~G~S~Gg~~a~~~a~~---~p~~~v~~~il~~~~~~~~ 169 (323)
+.-+.-|+..+ -+..+++|+++|-|.||.+.+.+|.+ +.-+.-+|+++.-++.-+.
T Consensus 450 -v~fAYcW~inn~allG~TgEriv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~ptl~q 511 (880)
T KOG4388|consen 450 -VFFAYCWAINNCALLGSTGERIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPPTLLQ 511 (880)
T ss_pred -HHHHHHHHhcCHHHhCcccceEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecChhhcc
Confidence 22222222111 11236799999999999877666544 2222256888876655443
No 212
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.0049 Score=42.43 Aligned_cols=78 Identities=10% Similarity=0.000 Sum_probs=49.8
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcE-EEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYA-VFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAF 133 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~-vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~ 133 (323)
...||+.-|+|..++ ....+. +.+ ++. ++++|++..... .++.. -..+.
T Consensus 11 d~LIvyFaGwgtpps-~v~HLi--lpe-N~dl~lcYDY~dl~ld-------fDfsA-------------------y~hir 60 (214)
T COG2830 11 DHLIVYFAGWGTPPS-AVNHLI--LPE-NHDLLLCYDYQDLNLD-------FDFSA-------------------YRHIR 60 (214)
T ss_pred CEEEEEEecCCCCHH-HHhhcc--CCC-CCcEEEEeehhhcCcc-------cchhh-------------------hhhhh
Confidence 458999999997765 554443 333 354 578888743211 12211 11567
Q ss_pred EEEechhHHHHHHHHhhcCCCCeeEEEEccCc
Q 020630 134 LFGESMGGAATMLMYFQSEPNTWTGLIFSAPL 165 (323)
Q Consensus 134 l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~ 165 (323)
+|++|||-.+|-++....+ +++.+.+++.
T Consensus 61 lvAwSMGVwvAeR~lqg~~---lksatAiNGT 89 (214)
T COG2830 61 LVAWSMGVWVAERVLQGIR---LKSATAINGT 89 (214)
T ss_pred hhhhhHHHHHHHHHHhhcc---ccceeeecCC
Confidence 9999999999999887655 5666666554
No 213
>PLN02454 triacylglycerol lipase
Probab=96.95 E-value=0.0054 Score=49.97 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=38.2
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc-------CCCCeeEEEEccCcc
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS-------EPNTWTGLIFSAPLF 166 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~-------p~~~v~~~il~~~~~ 166 (323)
...+++.+.|+.+..+++....++++.|||+||.+|+.+|... +...|..+++-+|-.
T Consensus 207 S~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPRV 271 (414)
T PLN02454 207 SARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQV 271 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCcc
Confidence 4556777777777776652222499999999999999988542 111155555555544
No 214
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=96.74 E-value=0.033 Score=47.32 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=74.0
Q ss_pred cEEEEEecCCCCCCceEEEEecCCCCCcchhhHH----HHHHHhcCCcEEEEeccccCcCCCC--CCCCCCChHHH----
Q 020630 41 KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQK----ICISYATWGYAVFAADLLGHGRSDG--IRCYLGDMEKV---- 110 (323)
Q Consensus 41 ~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~----~~~~l~~~g~~vi~~d~~G~G~s~~--~~~~~~~~~~~---- 110 (323)
.|.+.++.|.+ = ..-++.+-|.|......+.. +...+ .+||.+++-| -||..+.. ......+.+.+
T Consensus 16 ~i~fev~LP~~-W-NgR~~~~GgGG~~G~i~~~~~~~~~~~~~-~~G~A~~~TD-~Gh~~~~~~~~~~~~~n~~~~~dfa 91 (474)
T PF07519_consen 16 NIRFEVWLPDN-W-NGRFLQVGGGGFAGGINYADGKASMATAL-ARGYATASTD-SGHQGSAGSDDASFGNNPEALLDFA 91 (474)
T ss_pred eEEEEEECChh-h-ccCeEEECCCeeeCcccccccccccchhh-hcCeEEEEec-CCCCCCcccccccccCCHHHHHHHH
Confidence 78889999873 1 22345555544332212222 33444 4699999999 46665543 11111222222
Q ss_pred -------HhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCC
Q 020630 111 -------AASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 111 -------~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~ 168 (323)
+.--.++++..-.+ ....-+..|.|-||.-++..|.++|+. +++|+..+|....
T Consensus 92 ~ra~h~~~~~aK~l~~~~Yg~---~p~~sY~~GcS~GGRqgl~~AQryP~d-fDGIlAgaPA~~~ 152 (474)
T PF07519_consen 92 YRALHETTVVAKALIEAFYGK---APKYSYFSGCSTGGRQGLMAAQRYPED-FDGILAGAPAINW 152 (474)
T ss_pred hhHHHHHHHHHHHHHHHHhCC---CCCceEEEEeCCCcchHHHHHHhChhh-cCeEEeCCchHHH
Confidence 22222333333222 255778999999999999999999999 9999999997653
No 215
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=96.52 E-value=0.0065 Score=44.61 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=44.5
Q ss_pred HHHHhcCCcEEEEeccccCcCCCCC----CCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 76 CISYATWGYAVFAADLLGHGRSDGI----RCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 76 ~~~l~~~g~~vi~~d~~G~G~s~~~----~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
+..|... .+|+++=||-....... .......+-...|+.+..++.-.+.+ ++++++|+|||.|+.+..++...+
T Consensus 39 as~F~~~-~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 39 ASAFNGV-CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hhhhhcC-CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHH
Confidence 3445554 68888888743222111 00000122233677666665544432 267999999999999999998874
No 216
>PLN02310 triacylglycerol lipase
Probab=96.48 E-value=0.011 Score=48.21 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 110 VAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+.+.+..+++....+.+ ..++.+.|||+||.+|..+|..
T Consensus 191 Vl~eV~~L~~~y~~~~e--~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 191 VMQEVKRLVNFYRGKGE--EVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHhhcccCC--cceEEEEcccHHHHHHHHHHHH
Confidence 33444555444332211 3479999999999999988854
No 217
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.08 Score=41.33 Aligned_cols=133 Identities=15% Similarity=0.266 Sum_probs=87.4
Q ss_pred ecCCC-cEEEEEecCCC--CCCceEEEEecCCCCCcchh---hHHHHH-----------HHhcCCcEEEEeccc-cCcCC
Q 020630 36 ETPNG-KLFTQSFLPLD--QKVKATVYMTHGYGSDTGWM---FQKICI-----------SYATWGYAVFAADLL-GHGRS 97 (323)
Q Consensus 36 ~~~~g-~l~~~~~~~~~--~~~~~~vv~~hG~~~~~~~~---~~~~~~-----------~l~~~g~~vi~~d~~-G~G~s 97 (323)
...++ ..++..|.... ...+|..+.+.|..+.+..- |+.+.+ .|.. -.++.+|-| |.|.|
T Consensus 9 ~vr~~a~~F~wly~~~~~~ks~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~--adllfvDnPVGaGfS 86 (414)
T KOG1283|consen 9 DVRTGAHMFWWLYYATANVKSERPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKD--ADLLFVDNPVGAGFS 86 (414)
T ss_pred eeecCceEEEEEeeeccccccCCCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhh--ccEEEecCCCcCcee
Confidence 33455 66666665432 13478899999987654322 333221 2222 467888877 77777
Q ss_pred C--CCCCCCCChHHHHhhHHHHHHHHHhhCC-CCCCCEEEEEechhHHHHHHHHhhc------C--CCCeeEEEEccCcc
Q 020630 98 D--GIRCYLGDMEKVAASSLSFFKHVRHSEP-YRDLPAFLFGESMGGAATMLMYFQS------E--PNTWTGLIFSAPLF 166 (323)
Q Consensus 98 ~--~~~~~~~~~~~~~~d~~~~i~~l~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~------p--~~~v~~~il~~~~~ 166 (323)
- +...+..+..+.+.|+.++++.+-...+ .+..|++|+.-|+||-+|..++... . +.++.+++|-+++.
T Consensus 87 yVdg~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWI 166 (414)
T KOG1283|consen 87 YVDGSSAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWI 166 (414)
T ss_pred eecCcccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCccc
Confidence 5 3334444788999999999998866654 5577999999999999998877542 1 11367888877776
Q ss_pred CCCC
Q 020630 167 VIPE 170 (323)
Q Consensus 167 ~~~~ 170 (323)
...+
T Consensus 167 SP~D 170 (414)
T KOG1283|consen 167 SPED 170 (414)
T ss_pred ChhH
Confidence 5443
No 218
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=96.46 E-value=0.0056 Score=43.94 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=51.2
Q ss_pred cccEEEEeeCCCcccCchhHHHHHHHh---cCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 248 TVPFLTVHGTADGVTCPTSSKLLYEKA---SSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 248 ~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
++++|-|-|++|.++.+.+.....+.+ +......++.+|+||+..+.-+ ...+++...|.+|+.+
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~-rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGS-RWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccch-hhhhhhhHHHHHHHHh
Confidence 578888999999999988766655554 3334567888999999997655 5678899999999875
No 219
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=96.41 E-value=0.014 Score=46.19 Aligned_cols=63 Identities=17% Similarity=0.413 Sum_probs=48.5
Q ss_pred CCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 244 FSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 244 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
..++..|-.++.++.|.+..++.+...++.+++. .-+.++|+..|... . +.+.+.+..|+++.
T Consensus 325 ~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~-kaLrmvPN~~H~~~----n---~~i~esl~~flnrf 387 (507)
T COG4287 325 QLRLALPKYIVNASGDDFFVPDSANLYYDDLPGE-KALRMVPNDPHNLI----N---QFIKESLEPFLNRF 387 (507)
T ss_pred hhhccccceeecccCCcccCCCccceeeccCCCc-eeeeeCCCCcchhh----H---HHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999543 56888999999988 3 22444555565544
No 220
>PLN02571 triacylglycerol lipase
Probab=96.39 E-value=0.0082 Score=49.02 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 112 ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 112 ~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+++.+.++.+...++....++++.|||+||.+|...|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 444444444444332113368999999999999998864
No 221
>PLN02408 phospholipase A1
Probab=96.25 E-value=0.0098 Score=47.84 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=26.9
Q ss_pred HhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 111 AASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 111 ~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
.+.+.+.|..+...++....++++.|||+||.+|..+|..
T Consensus 181 r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 181 QEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 3445555555544443223369999999999999988865
No 222
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=96.24 E-value=0.015 Score=38.21 Aligned_cols=38 Identities=8% Similarity=0.055 Sum_probs=22.8
Q ss_pred ceeEEecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcc
Q 020630 31 GKEYFETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTG 69 (323)
Q Consensus 31 ~~~~~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~ 69 (323)
-..+.+..+| .|++....+.+ ....+|||+||++++--
T Consensus 68 ~phf~t~I~g~~iHFih~rs~~-~~aiPLll~HGWPgSf~ 106 (112)
T PF06441_consen 68 FPHFKTEIDGLDIHFIHVRSKR-PNAIPLLLLHGWPGSFL 106 (112)
T ss_dssp S-EEEEEETTEEEEEEEE--S--TT-EEEEEE--SS--GG
T ss_pred CCCeeEEEeeEEEEEEEeeCCC-CCCeEEEEECCCCccHH
Confidence 3456677789 99998887754 55779999999998754
No 223
>PLN02162 triacylglycerol lipase
Probab=96.18 E-value=0.016 Score=47.81 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHh
Q 020630 114 SLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYF 149 (323)
Q Consensus 114 ~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 149 (323)
+.+.++.+..+++ ..++++.|||+||.+|..+|.
T Consensus 264 I~~~L~~lL~k~p--~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 264 IRQMLRDKLARNK--NLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHhCC--CceEEEEecChHHHHHHHHHH
Confidence 4444443333333 558999999999999998765
No 224
>PLN03037 lipase class 3 family protein; Provisional
Probab=96.08 E-value=0.0096 Score=49.78 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=26.1
Q ss_pred HHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 110 VAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+.+++..+++....... ..++.+.|||+||.+|+..|..
T Consensus 300 Vl~eV~rLv~~Yk~~ge--~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 300 VMEEVKRLVNFFKDRGE--EVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHhccccCC--cceEEEeccCHHHHHHHHHHHH
Confidence 34555555554432211 3479999999999999988854
No 225
>PLN02324 triacylglycerol lipase
Probab=96.06 E-value=0.015 Score=47.49 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=27.5
Q ss_pred HHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 110 VAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
..+.+.+-|..+...++....+|.+.|||+||.+|...|..
T Consensus 195 areqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 195 AQEQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 34445555555555443212369999999999999998854
No 226
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=95.95 E-value=0.038 Score=50.94 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=63.0
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCE
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPA 132 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~ 132 (323)
...|+++|+|.+-+... .+..++..|. .|.+|.-........++++.++....-++.++. ..+.
T Consensus 2121 se~~~~Ffv~pIEG~tt-~l~~la~rle----------~PaYglQ~T~~vP~dSies~A~~yirqirkvQP-----~GPY 2184 (2376)
T KOG1202|consen 2121 SEEPPLFFVHPIEGFTT-ALESLASRLE----------IPAYGLQCTEAVPLDSIESLAAYYIRQIRKVQP-----EGPY 2184 (2376)
T ss_pred ccCCceEEEeccccchH-HHHHHHhhcC----------CcchhhhccccCCcchHHHHHHHHHHHHHhcCC-----CCCe
Confidence 34789999999887655 5555554432 233333222222223788777776666666654 4489
Q ss_pred EEEEechhHHHHHHHHhhc--CCCCeeEEEEccCcc
Q 020630 133 FLFGESMGGAATMLMYFQS--EPNTWTGLIFSAPLF 166 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~~--p~~~v~~~il~~~~~ 166 (323)
.++|+|+|+.++..+|... .+. ...+|++++..
T Consensus 2185 rl~GYSyG~~l~f~ma~~Lqe~~~-~~~lillDGsp 2219 (2376)
T KOG1202|consen 2185 RLAGYSYGACLAFEMASQLQEQQS-PAPLILLDGSP 2219 (2376)
T ss_pred eeeccchhHHHHHHHHHHHHhhcC-CCcEEEecCch
Confidence 9999999999999998753 223 55688887654
No 227
>PLN02847 triacylglycerol lipase
Probab=95.94 E-value=0.028 Score=47.93 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 112 ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 112 ~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+.+...+..+...++ +-+++++|||+||.+|..++..
T Consensus 235 ~~i~~~L~kal~~~P--dYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 235 KLSTPCLLKALDEYP--DFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred HHHHHHHHHHHHHCC--CCeEEEeccChHHHHHHHHHHH
Confidence 344444444444444 5589999999999999888765
No 228
>PLN00413 triacylglycerol lipase
Probab=95.88 E-value=0.016 Score=48.07 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=23.5
Q ss_pred HHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHh
Q 020630 115 LSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYF 149 (323)
Q Consensus 115 ~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 149 (323)
...++.+..+++ ..++++.|||+||.+|..+|.
T Consensus 271 ~~~Lk~ll~~~p--~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 271 LRHLKEIFDQNP--TSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHCC--CCeEEEEecCHHHHHHHHHHH
Confidence 333444434443 558999999999999998875
No 229
>PLN02802 triacylglycerol lipase
Probab=95.81 E-value=0.019 Score=48.00 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 112 ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 112 ~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+++.+-++.+...++....+|++.|||+||.+|..+|..
T Consensus 312 eqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 312 ESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 344444555444443113378999999999999988765
No 230
>PLN02934 triacylglycerol lipase
Probab=95.74 E-value=0.017 Score=48.26 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHh
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYF 149 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 149 (323)
.+...++.+..+++ ..++++.|||+||.+|..+|.
T Consensus 306 ~v~~~lk~ll~~~p--~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 306 AVRSKLKSLLKEHK--NAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHCC--CCeEEEeccccHHHHHHHHHH
Confidence 35555555555554 568999999999999998874
No 231
>PLN02761 lipase class 3 family protein
Probab=95.40 E-value=0.034 Score=46.68 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=26.4
Q ss_pred HhhHHHHHHHHHhhCC----CCCCCEEEEEechhHHHHHHHHhh
Q 020630 111 AASSLSFFKHVRHSEP----YRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 111 ~~d~~~~i~~l~~~~~----~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
.+++.+.|+.+...++ ....++.+.|||+||.+|...|..
T Consensus 271 R~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 271 REQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred HHHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHH
Confidence 3445555555544431 113479999999999999988853
No 232
>PLN02753 triacylglycerol lipase
Probab=95.37 E-value=0.037 Score=46.53 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHHHhhCCC---CCCCEEEEEechhHHHHHHHHhh
Q 020630 110 VAASSLSFFKHVRHSEPY---RDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~---~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
..+.+.+.|+.+..+++. ...+|.+.|||+||.+|...|..
T Consensus 289 ~reQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 289 AREQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 344555555555444321 13489999999999999998853
No 233
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.25 E-value=1.6 Score=36.80 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=72.3
Q ss_pred EecCCC-cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCCh-HHHHh
Q 020630 35 FETPNG-KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDM-EKVAA 112 (323)
Q Consensus 35 ~~~~~g-~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~-~~~~~ 112 (323)
+....+ ++.|+ +.|.+ -..|..|..-|+-..-.+.--.+.+.|..- -.+.-|.|--|.+--.... .+ +.+.+
T Consensus 270 ~~D~~reEi~yY-FnPGD-~KPPL~VYFSGyR~aEGFEgy~MMk~Lg~P--fLL~~DpRleGGaFYlGs~--eyE~~I~~ 343 (511)
T TIGR03712 270 LVDSKRQEFIYY-FNPGD-FKPPLNVYFSGYRPAEGFEGYFMMKRLGAP--FLLIGDPRLEGGAFYLGSD--EYEQGIIN 343 (511)
T ss_pred EecCCCCeeEEe-cCCcC-CCCCeEEeeccCcccCcchhHHHHHhcCCC--eEEeeccccccceeeeCcH--HHHHHHHH
Confidence 444455 55443 44443 456888999998754332222344444221 3456677766655322111 12 33445
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccC
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
-|.+.+++|+-. ...++|-|.|||..-|+.+++.... .++|+.-|...
T Consensus 344 ~I~~~L~~LgF~----~~qLILSGlSMGTfgAlYYga~l~P---~AIiVgKPL~N 391 (511)
T TIGR03712 344 VIQEKLDYLGFD----HDQLILSGLSMGTFGALYYGAKLSP---HAIIVGKPLVN 391 (511)
T ss_pred HHHHHHHHhCCC----HHHeeeccccccchhhhhhcccCCC---ceEEEcCcccc
Confidence 566667777665 6689999999999999999988543 46776666554
No 234
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.21 E-value=0.032 Score=45.02 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=45.6
Q ss_pred CCceEEEEecCCCC-CcchhhHHHHHHHhcC--CcEEEEeccccCcCCCCCCCCC-CChHHHHhhHHHHHHHHHhhCCCC
Q 020630 53 KVKATVYMTHGYGS-DTGWMFQKICISYATW--GYAVFAADLLGHGRSDGIRCYL-GDMEKVAASSLSFFKHVRHSEPYR 128 (323)
Q Consensus 53 ~~~~~vv~~hG~~~-~~~~~~~~~~~~l~~~--g~~vi~~d~~G~G~s~~~~~~~-~~~~~~~~d~~~~i~~l~~~~~~~ 128 (323)
+++-.||++||+-+ +.. .|..-+....+. +..++.....+. ........ .--...++++...+.....
T Consensus 78 k~~HLvVlthGi~~~~~~-~~~~~~~~~~kk~p~~~iv~~g~~~~--~~~T~~Gv~~lG~Rla~~~~e~~~~~si----- 149 (405)
T KOG4372|consen 78 KPKHLVVLTHGLHGADME-YWKEKIEQMTKKMPDKLIVVRGKMNN--MCQTFDGVDVLGERLAEEVKETLYDYSI----- 149 (405)
T ss_pred CCceEEEeccccccccHH-HHHHHHHhhhcCCCcceEeeeccccc--hhhccccceeeecccHHHHhhhhhcccc-----
Confidence 45689999999987 334 555555555544 333333333321 11111110 0112233444443333332
Q ss_pred CCCEEEEEechhHHHHHHHH
Q 020630 129 DLPAFLFGESMGGAATMLMY 148 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a 148 (323)
.++-.+|||+||.++..+.
T Consensus 150 -~kISfvghSLGGLvar~AI 168 (405)
T KOG4372|consen 150 -EKISFVGHSLGGLVARYAI 168 (405)
T ss_pred -ceeeeeeeecCCeeeeEEE
Confidence 3899999999999875443
No 235
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=95.03 E-value=0.058 Score=41.27 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=36.8
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCc
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPL 165 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~ 165 (323)
.+..+..+++..++..++ ..++.+.|||+||.+|..+-.++. +-.+.+-+|.
T Consensus 257 ryySa~ldI~~~v~~~Yp--da~iwlTGHSLGGa~AsLlG~~fg---lP~VaFesPG 308 (425)
T COG5153 257 RYYSAALDILGAVRRIYP--DARIWLTGHSLGGAIASLLGIRFG---LPVVAFESPG 308 (425)
T ss_pred chhHHHHHHHHHHHHhCC--CceEEEeccccchHHHHHhccccC---CceEEecCch
Confidence 334455566666666666 778999999999999998887765 3445555543
No 236
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=95.03 E-value=0.058 Score=41.27 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=36.8
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccCc
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPL 165 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~ 165 (323)
.+..+..+++..++..++ ..++.+.|||+||.+|..+-.++. +-.+.+-+|.
T Consensus 257 ryySa~ldI~~~v~~~Yp--da~iwlTGHSLGGa~AsLlG~~fg---lP~VaFesPG 308 (425)
T KOG4540|consen 257 RYYSAALDILGAVRRIYP--DARIWLTGHSLGGAIASLLGIRFG---LPVVAFESPG 308 (425)
T ss_pred chhHHHHHHHHHHHHhCC--CceEEEeccccchHHHHHhccccC---CceEEecCch
Confidence 334455566666666666 778999999999999998887765 3445555543
No 237
>PLN02719 triacylglycerol lipase
Probab=95.02 E-value=0.051 Score=45.61 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=27.6
Q ss_pred HHhhHHHHHHHHHhhCCC---CCCCEEEEEechhHHHHHHHHhh
Q 020630 110 VAASSLSFFKHVRHSEPY---RDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~---~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
..+++.+.|+.+...++. ...++.+.|||+||.+|..+|..
T Consensus 275 aReQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 275 AREQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 344555555555554431 12379999999999999998854
No 238
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=95.01 E-value=0.12 Score=38.99 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=37.4
Q ss_pred CcEEEEeccccC-cCCC--CCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 83 GYAVFAADLLGH-GRSD--GIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 83 g~~vi~~d~~G~-G~s~--~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
|+.+..+++|.. +--. +......+..+=++.+.+.|+..... +.+++++|+|+|+.++...+.+
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~----~~~vvV~GySQGA~Va~~~~~~ 68 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAA----GGPVVVFGYSQGAVVASNVLRR 68 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccC----CCCEEEEEECHHHHHHHHHHHH
Confidence 577788888861 1100 11111123444444444444443223 5689999999999999887765
No 239
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=94.20 E-value=0.19 Score=40.56 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=28.9
Q ss_pred CCCEEEEEechhHHHHHHHHhhcCCC----CeeEEEEccCccC
Q 020630 129 DLPAFLFGESMGGAATMLMYFQSEPN----TWTGLIFSAPLFV 167 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a~~~p~~----~v~~~il~~~~~~ 167 (323)
.+|+.|+|||+|+.+...++..-.++ .|..+++++.+..
T Consensus 219 ~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~ 261 (345)
T PF05277_consen 219 ERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVP 261 (345)
T ss_pred CCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCC
Confidence 55899999999999988766542221 1788999887654
No 240
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=94.16 E-value=0.083 Score=42.78 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
.+.+.++.+...++ .-++.+.|||+||.+|..+|..
T Consensus 156 ~~~~~~~~L~~~~~--~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 156 GLDAELRRLIELYP--NYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHhcC--CcEEEEecCChHHHHHHHHHHH
Confidence 34444444444443 4589999999999999988865
No 241
>PF03283 PAE: Pectinacetylesterase
Probab=93.45 E-value=2.2 Score=35.03 Aligned_cols=52 Identities=13% Similarity=0.016 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh----cCCCCeeEEEEccC
Q 020630 112 ASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ----SEPNTWTGLIFSAP 164 (323)
Q Consensus 112 ~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~----~p~~~v~~~il~~~ 164 (323)
.-+.++++++..+.-.+.++++|.|.|.||.-++..+.. .|.. ++-..+.++
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~-~~v~~~~Ds 193 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRLPSS-VKVKCLSDS 193 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHhccC-ceEEEeccc
Confidence 345666776666522235689999999999988875543 5543 444444443
No 242
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=0.45 Score=40.77 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=35.9
Q ss_pred HHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh-----cCC-----CCeeEEEEccCc
Q 020630 109 KVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ-----SEP-----NTWTGLIFSAPL 165 (323)
Q Consensus 109 ~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~-----~p~-----~~v~~~il~~~~ 165 (323)
.++.-...+++.+....-.++.+++.+||||||.++=.+... .|+ ++-+|+|+++.+
T Consensus 505 sl~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 505 SLAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 344444556666655443347799999999999988665543 232 125677776654
No 243
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=90.91 E-value=0.59 Score=39.95 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=49.1
Q ss_pred cccEEEEeeCCCcccCchhHHHHHHHhc----CC------CCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 248 TVPFLTVHGTADGVTCPTSSKLLYEKAS----SA------DKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 248 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
--.+++.||..|.++|+.....+++++. .. -.++..+||.+|+.--.-+. .-.....|.+|+++
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~--~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPD--PFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCC--CCCHHHHHHHHHhC
Confidence 4689999999999999999888887762 11 24789999999998743222 23578889999885
No 244
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=89.93 E-value=3.7 Score=26.48 Aligned_cols=84 Identities=12% Similarity=0.009 Sum_probs=50.6
Q ss_pred hhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhH--HHHHHHH
Q 020630 71 MFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGG--AATMLMY 148 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg--~~a~~~a 148 (323)
.|..+.+.+..+||-.-.+.++..|.+..........+.=...+..+++.. + ..+++++|-|--. -+-..+|
T Consensus 12 ly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~f----P--~~kfiLIGDsgq~DpeiY~~ia 85 (100)
T PF09949_consen 12 LYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDF----P--ERKFILIGDSGQHDPEIYAEIA 85 (100)
T ss_pred HHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHC----C--CCcEEEEeeCCCcCHHHHHHHH
Confidence 455666677677887777888877655322111101112223444444444 3 5599999999543 3445677
Q ss_pred hhcCCCCeeEEEE
Q 020630 149 FQSEPNTWTGLIF 161 (323)
Q Consensus 149 ~~~p~~~v~~~il 161 (323)
.++|++ |.++.+
T Consensus 86 ~~~P~~-i~ai~I 97 (100)
T PF09949_consen 86 RRFPGR-ILAIYI 97 (100)
T ss_pred HHCCCC-EEEEEE
Confidence 889998 888764
No 245
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=88.44 E-value=5.5 Score=31.48 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=51.1
Q ss_pred eEEEEecCCCCCcchh-----hHHHHHHH-hcCCcEEEEeccccCcCC--------CCCCC--CCC-ChHHHHhhHHHHH
Q 020630 56 ATVYMTHGYGSDTGWM-----FQKICISY-ATWGYAVFAADLLGHGRS--------DGIRC--YLG-DMEKVAASSLSFF 118 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~-----~~~~~~~l-~~~g~~vi~~d~~G~G~s--------~~~~~--~~~-~~~~~~~d~~~~i 118 (323)
..|||+=|.+.+.... -..+.+.+ ...+-..+.+=.+|.|.. ..... ... .-..+.+.|....
T Consensus 2 ~iv~~fDGT~n~~~~~~~~TNV~rL~~~~~~~~~~~q~~~Y~~GvGt~~~~~~~~~~~~~~~~~~~a~g~g~~~~I~~ay 81 (277)
T PF09994_consen 2 RIVVFFDGTGNNPDNDPPPTNVARLYDAYKDRDGERQIVYYIPGVGTEFGSEFGESGRALDRLLGGAFGWGIEARIRDAY 81 (277)
T ss_pred cEEEEecCCCCCCCCCccccHHHHHHHHhhccCCCceeEEEecccccccccccccccchhhhccCchhhcchHHHHHHHH
Confidence 4678888876543211 13344455 222334555566777771 11000 000 0122334455555
Q ss_pred HHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 119 KHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 119 ~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
..+...+. ...++.++|+|-|+.+|-.+|..
T Consensus 82 ~~l~~~~~-~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 82 RFLSKNYE-PGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred HHHHhccC-CcceEEEEecCccHHHHHHHHHH
Confidence 55544432 25579999999999999998876
No 246
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=86.75 E-value=2.7 Score=35.54 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=59.6
Q ss_pred cEEEEEecC-CCCCCceEEEEecCCCCCc---c-hhhHHHHHHHhcCC-cEEEEeccc----c---CcCCCCCCCCCCCh
Q 020630 41 KLFTQSFLP-LDQKVKATVYMTHGYGSDT---G-WMFQKICISYATWG-YAVFAADLL----G---HGRSDGIRCYLGDM 107 (323)
Q Consensus 41 ~l~~~~~~~-~~~~~~~~vv~~hG~~~~~---~-~~~~~~~~~l~~~g-~~vi~~d~~----G---~G~s~~~~~~~~~~ 107 (323)
-|..-+|.| .+.....++|++-|.|.-+ . ..|+ .+.|+..+ --|+.+++| | .+..+..++...-+
T Consensus 120 CLYlNVW~P~~~p~n~tVlVWiyGGGF~sGt~SLdvYd--Gk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPGNmGl~ 197 (601)
T KOG4389|consen 120 CLYLNVWAPAADPYNLTVLVWIYGGGFYSGTPSLDVYD--GKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPGNMGLL 197 (601)
T ss_pred ceEEEEeccCCCCCCceEEEEEEcCccccCCcceeeec--cceeeeeccEEEEEeeeeeccceEEecCCCCCCCCccchH
Confidence 366677877 3334456888888876321 1 1222 33454432 345556665 1 12222223322223
Q ss_pred HHH--HhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh--cCCCCeeEEEEccCccC
Q 020630 108 EKV--AASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ--SEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 108 ~~~--~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~--~p~~~v~~~il~~~~~~ 167 (323)
++. ...+.+-|...+. +..++.|+|.|.|+.-...-... -... ++..|+-++...
T Consensus 198 DQqLAl~WV~~Ni~aFGG----np~~vTLFGESAGaASv~aHLlsP~S~gl-F~raIlQSGS~~ 256 (601)
T KOG4389|consen 198 DQQLALQWVQENIAAFGG----NPSRVTLFGESAGAASVVAHLLSPGSRGL-FHRAILQSGSLN 256 (601)
T ss_pred HHHHHHHHHHHhHHHhCC----CcceEEEeccccchhhhhheecCCCchhh-HHHHHhhcCCCC
Confidence 332 2344444444443 47799999999998654322211 1122 566666555443
No 247
>PRK12467 peptide synthase; Provisional
Probab=86.71 E-value=8.8 Score=42.80 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=65.8
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
.+.+++.|+..++.. .+..+...+.. +..++.+..++.-.... ...+++.++....+.+.+.... .+..+
T Consensus 3692 ~~~l~~~h~~~r~~~-~~~~l~~~l~~-~~~~~~l~~~~~~~d~~---~~~~~~~~~~~y~~~~~~~~~~-----~p~~l 3761 (3956)
T PRK12467 3692 FPALFCRHEGLGTVF-DYEPLAVILEG-DRHVLGLTCRHLLDDGW---QDTSLQAMAVQYADYILWQQAK-----GPYGL 3761 (3956)
T ss_pred ccceeeechhhcchh-hhHHHHHHhCC-CCcEEEEeccccccccC---CccchHHHHHHHHHHHHHhccC-----CCeee
Confidence 356999999887654 67777777754 47888887765432211 1126777777777777766543 37899
Q ss_pred EEechhHHHHHHHHhh---cCCCCeeEEEEcc
Q 020630 135 FGESMGGAATMLMYFQ---SEPNTWTGLIFSA 163 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a~~---~p~~~v~~~il~~ 163 (323)
.|+|+||.++..++.. ..+. +.-+.++.
T Consensus 3762 ~g~s~g~~~a~~~~~~l~~~g~~-~~~~~~~~ 3792 (3956)
T PRK12467 3762 LGWSLGGTLARLVAELLEREGES-EAFLGLFD 3792 (3956)
T ss_pred eeeecchHHHHHHHHHHHHcCCc-eeEEEEEe
Confidence 9999999999888765 3333 55555543
No 248
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=83.72 E-value=1.7 Score=35.80 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=46.1
Q ss_pred HHhcCCcccccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccC-CchhHHHHHHHHHHHHH
Q 020630 240 IQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGE-PDENANLVLKDMREWID 312 (323)
Q Consensus 240 ~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~i~~fl~ 312 (323)
+...+++-.-.+|+|+|++|+..-.. ..+.. +..++.+.+.||++|...+.. ++....+....|.+|..
T Consensus 343 I~~Wvr~~~~rmlFVYG~nDPW~A~~--f~l~~--g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 343 IDRWVRNNGPRMLFVYGENDPWSAEP--FRLGK--GKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred HHHHHHhCCCeEEEEeCCCCCcccCc--cccCC--CCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 33444555678999999999875321 11111 235678888899999887643 34556777788888864
No 249
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=81.72 E-value=12 Score=30.02 Aligned_cols=105 Identities=11% Similarity=-0.020 Sum_probs=62.6
Q ss_pred CCceEEEEecCCCCC----cchhhHHHHHHHhc-CCcEEEEeccccCcCCCCCC----------CCCCC--hHHHHhhHH
Q 020630 53 KVKATVYMTHGYGSD----TGWMFQKICISYAT-WGYAVFAADLLGHGRSDGIR----------CYLGD--MEKVAASSL 115 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~----~~~~~~~~~~~l~~-~g~~vi~~d~~G~G~s~~~~----------~~~~~--~~~~~~d~~ 115 (323)
..+..|+++-|.... ....--.+...|.. .+-+++++=-+|.|.-.-.. ....+ -..+.+.|.
T Consensus 29 s~k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~ 108 (423)
T COG3673 29 SMKRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIR 108 (423)
T ss_pred CcceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 346788888885422 11122334555554 57888888888888653110 00000 122345566
Q ss_pred HHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEcc
Q 020630 116 SFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSA 163 (323)
Q Consensus 116 ~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~ 163 (323)
.+...|...+. .+.+|+++|+|-|+.+|--+|.. |..+-+++
T Consensus 109 ~AYrFL~~~ye-pGD~Iy~FGFSRGAf~aRVlagm-----ir~vGlls 150 (423)
T COG3673 109 EAYRFLIFNYE-PGDEIYAFGFSRGAFSARVLAGM-----IRHVGLLS 150 (423)
T ss_pred HHHHHHHHhcC-CCCeEEEeeccchhHHHHHHHHH-----HHHhhhhc
Confidence 66666665543 25689999999999999888876 44454444
No 250
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=81.56 E-value=18 Score=26.32 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.9
Q ss_pred CCceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEec
Q 020630 53 KVKATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d 90 (323)
+.++.+|++-|+.++. +..-..+.+.|.++|++++..|
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3467999999998774 3244567788888999999998
No 251
>PRK02399 hypothetical protein; Provisional
Probab=79.26 E-value=32 Score=28.78 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=59.4
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCC---------CCC-------------ChHHHHhhHHH
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRC---------YLG-------------DMEKVAASSLS 116 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~---------~~~-------------~~~~~~~d~~~ 116 (323)
|++=|...+....+..+.+.+.++|..|+.+|.-..|....... ... .++.+++-+..
T Consensus 6 I~iigT~DTK~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~ 85 (406)
T PRK02399 6 IYIAGTLDTKGEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAA 85 (406)
T ss_pred EEEEeccCCcHHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHH
Confidence 44445555554466677777777899999999844432211100 000 12333444555
Q ss_pred HHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEE
Q 020630 117 FFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIF 161 (323)
Q Consensus 117 ~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il 161 (323)
++..+..+.. -.-++-+|-|.|..++..+....|-- +-++++
T Consensus 86 ~v~~L~~~g~--i~gviglGGs~GT~lat~aMr~LPiG-~PKlmV 127 (406)
T PRK02399 86 FVRELYERGD--VAGVIGLGGSGGTALATPAMRALPIG-VPKLMV 127 (406)
T ss_pred HHHHHHhcCC--ccEEEEecCcchHHHHHHHHHhCCCC-CCeEEE
Confidence 5555544432 23477899999999999988877755 555554
No 252
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=78.11 E-value=11 Score=26.81 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=32.8
Q ss_pred hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccC
Q 020630 107 MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 107 ~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~ 164 (323)
.++..+.+.++++.+..+ +.+++++|-|..|..-+.++...++. |..++=.+|
T Consensus 50 ~~~~~~~l~~~L~~~~~~----gk~I~~yGA~~kg~tlln~~g~~~~~-I~~vvD~np 102 (160)
T PF08484_consen 50 VEQSKAELREFLEKLKAE----GKRIAGYGAGAKGNTLLNYFGLDNDL-IDYVVDDNP 102 (160)
T ss_dssp HHHHHHHHHHHHHHHHHT----T--EEEE---SHHHHHHHHHT--TTT-S--EEES-G
T ss_pred HHHHHHHHHHHHHHHHHc----CCEEEEECcchHHHHHHHHhCCCcce-eEEEEeCCh
Confidence 445556677777777776 55899999999999999998876776 777776654
No 253
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=77.90 E-value=20 Score=30.07 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=29.5
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCC
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSD 98 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~ 98 (323)
|||+|+..- . .|+.+++.|.++|+.|..+-..+.+...
T Consensus 2 il~~~~~~p--~-~~~~la~~L~~~G~~v~~~~~~~~~~~~ 39 (396)
T cd03818 2 ILFVHQNFP--G-QFRHLAPALAAQGHEVVFLTEPNAAPPP 39 (396)
T ss_pred EEEECCCCc--h-hHHHHHHHHHHCCCEEEEEecCCCCCCC
Confidence 788988652 3 5788999999999999888777665543
No 254
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=77.38 E-value=29 Score=29.00 Aligned_cols=101 Identities=15% Similarity=0.039 Sum_probs=62.2
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCC---------C-------------CChHHHHhhH
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCY---------L-------------GDMEKVAASS 114 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~---------~-------------~~~~~~~~d~ 114 (323)
.|+++ |...+....+..+.+.+.+.|..++.+|.--.|........ . ..++.+++-+
T Consensus 3 tI~ii-gT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga 81 (403)
T PF06792_consen 3 TIAII-GTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGA 81 (403)
T ss_pred EEEEE-EccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHH
Confidence 34444 44445544677788888889999999996545444321100 0 0123344455
Q ss_pred HHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEE
Q 020630 115 LSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIF 161 (323)
Q Consensus 115 ~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il 161 (323)
..++..+..+.. -.-++-+|-|.|..++..+....|-- +-++++
T Consensus 82 ~~~v~~l~~~g~--i~Gvi~~GGs~GT~lat~aMr~LPiG-~PKlmV 125 (403)
T PF06792_consen 82 ARFVSDLYDEGK--IDGVIGIGGSGGTALATAAMRALPIG-FPKLMV 125 (403)
T ss_pred HHHHHHHHhcCC--ccEEEEecCCccHHHHHHHHHhCCCC-CCeEEE
Confidence 556666655432 22467899999999999988877755 555554
No 255
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=76.82 E-value=22 Score=26.78 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=48.9
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEeccccCcCCC-C----------CCCCCCChHHHHhh-----HHH
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAADLLGHGRSD-G----------IRCYLGDMEKVAAS-----SLS 116 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d~~G~G~s~-~----------~~~~~~~~~~~~~d-----~~~ 116 (323)
..+.|++++-...........+...|.+. |+.+..++... ... . .++ .+...+.+. +.+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~~ad~I~l~G--G~~~~~~~~l~~~~l~~ 105 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD--TEDPLDALLEADVIYVGG--GNTFNLLAQWREHGLDA 105 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC--cccHHHHHhcCCEEEECC--chHHHHHHHHHHcCHHH
Confidence 46788899887765443556677788888 99988887543 111 0 001 122222222 333
Q ss_pred HHHHHHhhCCCCCCCEEEEEechhHHHHHH
Q 020630 117 FFKHVRHSEPYRDLPAFLFGESMGGAATML 146 (323)
Q Consensus 117 ~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~ 146 (323)
+++....+ ...++|.|.|+.+...
T Consensus 106 ~l~~~~~~------g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 106 ILKAALER------GVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHHHHHC------CCEEEEECHhHHhhCC
Confidence 34333222 4789999999988765
No 256
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=76.03 E-value=20 Score=26.77 Aligned_cols=71 Identities=13% Similarity=-0.035 Sum_probs=45.5
Q ss_pred HHHhcCCc-EEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEech----hHHHHHHHHhhc
Q 020630 77 ISYATWGY-AVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESM----GGAATMLMYFQS 151 (323)
Q Consensus 77 ~~l~~~g~-~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~----Gg~~a~~~a~~~ 151 (323)
+.+...|. +|+..|.++... ++.+.+++.+.++++... ..++++|+|. |..++-++|.+.
T Consensus 70 ~~l~~~G~d~V~~~~~~~~~~--------~~~e~~a~al~~~i~~~~-------p~lVL~~~t~~~~~grdlaprlAarL 134 (202)
T cd01714 70 REALAMGADRAILVSDRAFAG--------ADTLATAKALAAAIKKIG-------VDLILTGKQSIDGDTGQVGPLLAELL 134 (202)
T ss_pred HHHHHcCCCEEEEEecccccC--------CChHHHHHHHHHHHHHhC-------CCEEEEcCCcccCCcCcHHHHHHHHh
Confidence 33444565 677777553322 367777788877776643 2699999998 888998888874
Q ss_pred CCCCeeEEEEc
Q 020630 152 EPNTWTGLIFS 162 (323)
Q Consensus 152 p~~~v~~~il~ 162 (323)
.-.-+..++-+
T Consensus 135 ga~lvsdv~~l 145 (202)
T cd01714 135 GWPQITYVSKI 145 (202)
T ss_pred CCCccceEEEE
Confidence 32214444443
No 257
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=74.73 E-value=16 Score=27.35 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=30.0
Q ss_pred ceEEEEecCCCCCcch--hhHHHHHHHhcCCcEEEEeccc
Q 020630 55 KATVYMTHGYGSDTGW--MFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~--~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
++.|.|++-.+.+..+ +-+...+.|.+.|..+..+++-
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~ 71 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLS 71 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeecc
Confidence 6799999998887664 4466778888999998888753
No 258
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=73.92 E-value=25 Score=24.98 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=27.1
Q ss_pred ceEEEEecCCCCCcc-hhhHHHHHHHhcCCcEEEEeccc
Q 020630 55 KATVYMTHGYGSDTG-WMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~-~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
++.||++-|..++.. ..-..+.+.|.+.|+.++.+|--
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 468999999987743 24456777788889999999843
No 259
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=72.54 E-value=36 Score=26.52 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=26.9
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcE-EEEeccc
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYA-VFAADLL 92 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~-vi~~d~~ 92 (323)
++.+.|++++-.+.........+.+.|.+.|+. |-.++.+
T Consensus 26 ~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 26 GEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 446788899876655443556677778888884 5556654
No 260
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=72.32 E-value=35 Score=26.20 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=27.2
Q ss_pred ceEEEEecCCCCC--cchhhHHHHHHHhcCCcEEEEeccc
Q 020630 55 KATVYMTHGYGSD--TGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 55 ~~~vv~~hG~~~~--~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
+|.|+||+-.... ...+...+.+.|.+.|+.|..++..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~ 70 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV 70 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 6789999887733 3323455677788889998888765
No 261
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.47 E-value=23 Score=30.45 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=28.9
Q ss_pred CCCEEEEEechhHHHHHHHHhh-----cCCCCeeEEEEccCccCC
Q 020630 129 DLPAFLFGESMGGAATMLMYFQ-----SEPNTWTGLIFSAPLFVI 168 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a~~-----~p~~~v~~~il~~~~~~~ 168 (323)
.+||.|+|+|.|+.+....+.. .-.. |..+++++++...
T Consensus 446 ~RPVTLVGFSLGARvIf~CL~~Lakkke~~i-IEnViL~GaPv~~ 489 (633)
T KOG2385|consen 446 NRPVTLVGFSLGARVIFECLLELAKKKEVGI-IENVILFGAPVPT 489 (633)
T ss_pred CCceeEeeeccchHHHHHHHHHHhhcccccc-eeeeeeccCCccC
Confidence 5689999999999998865542 1233 7888888876543
No 262
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=70.01 E-value=7.6 Score=26.30 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=37.0
Q ss_pred CCceEEEEecCCCCCcc-hhhHHHHHHHhcCCcE---EE----EeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhh
Q 020630 53 KVKATVYMTHGYGSDTG-WMFQKICISYATWGYA---VF----AADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHS 124 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~-~~~~~~~~~l~~~g~~---vi----~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~ 124 (323)
..+|.|+-+||+.|... +.-+.+++.|-..|.. |. ..|+| ....++++-+++...|...-..
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP----------~~~~v~~Yk~~L~~~I~~~v~~ 119 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFP----------HNSNVDEYKEQLKSWIRGNVSR 119 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCC----------CchHHHHHHHHHHHHHHHHHHh
Confidence 45899999999988753 3445567766555432 21 22222 1114666667777777665544
No 263
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=69.56 E-value=3.9 Score=29.04 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=30.7
Q ss_pred EEeccccCcCCCC--CCCCCCChHHHHhhHHHHHHHHHhhCC--CCCCCEEEEEechhHH
Q 020630 87 FAADLLGHGRSDG--IRCYLGDMEKVAASSLSFFKHVRHSEP--YRDLPAFLFGESMGGA 142 (323)
Q Consensus 87 i~~d~~G~G~s~~--~~~~~~~~~~~~~d~~~~i~~l~~~~~--~~~~~~~l~G~S~Gg~ 142 (323)
+.+-+-|||.... ..-..++.++++.-+..+-+.+....+ ..+.++.|+|.|++..
T Consensus 57 ~rw~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 57 VRWQLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEEEEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred ceEEEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 3444567776621 111223677777777555566665442 2356899999999887
No 264
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=67.65 E-value=15 Score=27.90 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=39.3
Q ss_pred cEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEE--EEEechhH-HHHHHHHh
Q 020630 84 YAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAF--LFGESMGG-AATMLMYF 149 (323)
Q Consensus 84 ~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~--l~G~S~Gg-~~a~~~a~ 149 (323)
=-|+.+|-+|...+....-. -+......+...+...+.. +.+++ ++|++++| .++.-+.+
T Consensus 66 pIv~lVD~~sQa~grreEll--Gi~~alAhla~a~a~AR~~----GHpvI~Lv~G~A~SGaFLA~GlqA 128 (234)
T PF06833_consen 66 PIVALVDVPSQAYGRREELL--GINQALAHLAKAYALARLA----GHPVIGLVYGKAMSGAFLAHGLQA 128 (234)
T ss_pred CEEEEEeCCccccchHHHHh--hHHHHHHHHHHHHHHHHHc----CCCeEEEEecccccHHHHHHHHHh
Confidence 35788999988776543322 4556666677777777766 44776 89999855 45544443
No 265
>PLN02748 tRNA dimethylallyltransferase
Probab=67.63 E-value=46 Score=28.72 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=47.6
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEec----cccCc--CCC----------------CCCCCCCChHHH
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAAD----LLGHG--RSD----------------GIRCYLGDMEKV 110 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d----~~G~G--~s~----------------~~~~~~~~~~~~ 110 (323)
.++.+|+|-|-.++.. ..++..|+.+ +..+|..| |+|.. ... ..+...++..++
T Consensus 20 ~~~~~i~i~GptgsGK---s~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F 96 (468)
T PLN02748 20 GKAKVVVVMGPTGSGK---SKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDF 96 (468)
T ss_pred CCCCEEEEECCCCCCH---HHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHH
Confidence 4556777777665543 2344445544 56788888 33321 111 122334688999
Q ss_pred HhhHHHHHHHHHhhCCCCCCCEEEEEec
Q 020630 111 AASSLSFFKHVRHSEPYRDLPAFLFGES 138 (323)
Q Consensus 111 ~~d~~~~i~~l~~~~~~~~~~~~l~G~S 138 (323)
.++...+|+.+..+ +.-.+|||-|
T Consensus 97 ~~~A~~~I~~I~~r----gk~PIlVGGT 120 (468)
T PLN02748 97 RDHAVPLIEEILSR----NGLPVIVGGT 120 (468)
T ss_pred HHHHHHHHHHHHhc----CCCeEEEcCh
Confidence 99999999998876 3355677655
No 266
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=66.90 E-value=14 Score=29.34 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCcEEEEeccccCcCCC
Q 020630 73 QKICISYATWGYAVFAADLLGHGRSD 98 (323)
Q Consensus 73 ~~~~~~l~~~g~~vi~~d~~G~G~s~ 98 (323)
...+..|.+.||.|+++|-.-.|...
T Consensus 14 SHtv~~Ll~~G~~vvV~DNL~~g~~~ 39 (329)
T COG1087 14 SHTVRQLLKTGHEVVVLDNLSNGHKI 39 (329)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCHH
Confidence 34566777899999999988766554
No 267
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=66.67 E-value=26 Score=21.24 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=29.3
Q ss_pred hHHHHhhHHHHHHHHHhhCCCC-CCCEEEEEechhHHHHHHHHhhc
Q 020630 107 MEKVAASSLSFFKHVRHSEPYR-DLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 107 ~~~~~~d~~~~i~~l~~~~~~~-~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
.....+.+.+-+++++.+..++ ++++.++|-|.|=.+|.+.+..+
T Consensus 16 P~GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 16 PVGCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh
Confidence 3445566777777777654332 35788999999999998877765
No 268
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=66.60 E-value=8.6 Score=29.28 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=26.8
Q ss_pred ceEEEEecCCCC-CcchhhHHHHHHHhcCCcEEEEec
Q 020630 55 KATVYMTHGYGS-DTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 55 ~~~vv~~hG~~~-~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
...||++|.... +.. ....+++.|.++||+++.++
T Consensus 186 ~g~IiLlHd~~~~t~~-aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 186 PGAILLLHAVSKDNAE-ALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CCcEEEEECCCCCHHH-HHHHHHHHHHHCCCEEEEhH
Confidence 357899998543 334 67889999999999998875
No 269
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=66.04 E-value=60 Score=26.15 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=45.8
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCcEEEEec----cccCc--CCC----------------CCCCCCCChHHHHhhH
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAAD----LLGHG--RSD----------------GIRCYLGDMEKVAASS 114 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d----~~G~G--~s~----------------~~~~~~~~~~~~~~d~ 114 (323)
.||++-|-.++.. ..++-.|++++-.+|..| |+|.. ... ..+...++..++.++.
T Consensus 5 ~ii~I~GpTasGK---S~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a 81 (300)
T PRK14729 5 KIVFIFGPTAVGK---SNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA 81 (300)
T ss_pred cEEEEECCCccCH---HHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH
Confidence 3667777665533 234445555545888888 34431 111 1223346788899999
Q ss_pred HHHHHHHHhhCCCCCCCEEEEEec
Q 020630 115 LSFFKHVRHSEPYRDLPAFLFGES 138 (323)
Q Consensus 115 ~~~i~~l~~~~~~~~~~~~l~G~S 138 (323)
...|+.+..+ +...+|+|-|
T Consensus 82 ~~~i~~i~~~----gk~PilvGGT 101 (300)
T PRK14729 82 LKIIKELRQQ----KKIPIFVGGS 101 (300)
T ss_pred HHHHHHHHHC----CCCEEEEeCc
Confidence 9999988776 3345677655
No 270
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=65.11 E-value=39 Score=25.89 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=47.8
Q ss_pred ceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhh-HHHHHHHHHhhCCCCCCCE
Q 020630 55 KATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAAS-SLSFFKHVRHSEPYRDLPA 132 (323)
Q Consensus 55 ~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d-~~~~i~~l~~~~~~~~~~~ 132 (323)
.|+||++.|+.++. +..-..+...|..+|++|.++.-| +-++...+ +-.+-..+-. .+.+
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p-------------t~eE~~~p~lwRfw~~lP~-----~G~i 91 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP-------------SDRERTQWYFQRYVQHLPA-----AGEI 91 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC-------------CHHHHcChHHHHHHHhCCC-----CCeE
Confidence 68999999997663 336677888898899999998766 33443333 3334444433 4478
Q ss_pred EEEEechhHHH
Q 020630 133 FLFGESMGGAA 143 (323)
Q Consensus 133 ~l~G~S~Gg~~ 143 (323)
.|+=-|+=+-+
T Consensus 92 ~IF~rSwY~~~ 102 (230)
T TIGR03707 92 VLFDRSWYNRA 102 (230)
T ss_pred EEEeCchhhhH
Confidence 88887865443
No 271
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=64.99 E-value=16 Score=28.83 Aligned_cols=83 Identities=25% Similarity=0.183 Sum_probs=46.2
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCc-------EEEEeccccCcCCCCCCCCCCChHHHH--------hhHHHHHHHH
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGY-------AVFAADLLGHGRSDGIRCYLGDMEKVA--------ASSLSFFKHV 121 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~-------~vi~~d~~G~G~s~~~~~~~~~~~~~~--------~d~~~~i~~l 121 (323)
.-|++.|.|...--.-+.+...+.+.|. +++.+|..|-=..+... ....-..++ .++.++++.+
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~-l~~~~~~~a~~~~~~~~~~L~e~i~~v 104 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKD-LTPFKKPFARKDEEKEGKSLLEVVKAV 104 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCc-chHHHHHHHhhcCcccCCCHHHHHHhc
Confidence 3455667664432244556666666677 89999999853332211 000111222 2455666555
Q ss_pred HhhCCCCCCCEEEEEech-hHHHHHHHH
Q 020630 122 RHSEPYRDLPAFLFGESM-GGAATMLMY 148 (323)
Q Consensus 122 ~~~~~~~~~~~~l~G~S~-Gg~~a~~~a 148 (323)
+ +-+|+|-|- ||.+.-.+.
T Consensus 105 ~--------ptvlIG~S~~~g~ft~evv 124 (279)
T cd05312 105 K--------PTVLIGLSGVGGAFTEEVV 124 (279)
T ss_pred C--------CCEEEEeCCCCCCCCHHHH
Confidence 4 568999995 776554443
No 272
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=64.93 E-value=20 Score=26.76 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCc-EEEEecccc
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGY-AVFAADLLG 93 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~-~vi~~d~~G 93 (323)
+...+|++.||...++...|..+--.|.+.|| .|+....-|
T Consensus 136 k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~ 177 (265)
T COG4822 136 KDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEG 177 (265)
T ss_pred cCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 45678999999886654466666667777888 666555443
No 273
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=62.77 E-value=8 Score=33.83 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=30.4
Q ss_pred EEEEEechhHHHHHHHHhhcCCCCeeEEEEccCccCCC
Q 020630 132 AFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIP 169 (323)
Q Consensus 132 ~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~ 169 (323)
++..+.|-||..++..|.+..+.-|++++...|...+.
T Consensus 287 VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~~~ 324 (690)
T PF10605_consen 287 VIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVNLP 324 (690)
T ss_pred EEEEeecCccHHHHhHhhcccCCceeeEEecCCccCCC
Confidence 55678889999999999986655599999988876654
No 274
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=62.24 E-value=14 Score=28.87 Aligned_cols=70 Identities=9% Similarity=0.035 Sum_probs=45.8
Q ss_pred ceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhh-HHHHHHHHHhhCCCCCCCE
Q 020630 55 KATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAAS-SLSFFKHVRHSEPYRDLPA 132 (323)
Q Consensus 55 ~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d-~~~~i~~l~~~~~~~~~~~ 132 (323)
.|+||++.|+.++. +..-..+...|..+|++|.++.-| +-++...+ +-.+-..+-. .+.+
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P-------------t~eE~~~p~lWRfw~~lP~-----~G~i 116 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP-------------SAEELDHDFLWRIHKALPE-----RGEI 116 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC-------------CHHHHcCchHHHHHHhCCC-----CCeE
Confidence 68999999997663 336678888898899999999655 33333322 3334444433 3467
Q ss_pred EEEEechhHH
Q 020630 133 FLFGESMGGA 142 (323)
Q Consensus 133 ~l~G~S~Gg~ 142 (323)
.|+=-|+=+-
T Consensus 117 ~IF~RSWY~~ 126 (264)
T TIGR03709 117 GIFNRSHYED 126 (264)
T ss_pred EEEcCccccc
Confidence 7777775433
No 275
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=61.98 E-value=90 Score=26.43 Aligned_cols=75 Identities=11% Similarity=0.143 Sum_probs=40.3
Q ss_pred ceEEEEecCCCCC---cchhhHHHHHHHhcCCcEEEEeccccC---cCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCC
Q 020630 55 KATVYMTHGYGSD---TGWMFQKICISYATWGYAVFAADLLGH---GRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYR 128 (323)
Q Consensus 55 ~~~vv~~hG~~~~---~~~~~~~~~~~l~~~g~~vi~~d~~G~---G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~ 128 (323)
+.+||+++..... .. ....-...|.+.|+.|+-+. +|+ |+.. .+...+.++.+..+...+..- ...
T Consensus 116 ~~pvvi~Pamn~~m~~~p-~~~~Nl~~L~~~G~~ii~P~-~g~la~~~~g--~gr~~~~~~I~~~~~~~~~~~----~l~ 187 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENP-ATQRNLATLRSRGVEIIGPA-SGRLACGDVG--PGRMAEPEEIVAAAERALSPK----DLA 187 (399)
T ss_pred CCCEEEEeCCChhHcCCH-HHHHHHHHHHHCCCEEECCC-CccccCCCcC--CCCCCCHHHHHHHHHHHhhhc----ccC
Confidence 3456666644321 11 23455667888899888665 333 3222 122336777777766665431 112
Q ss_pred CCCEEEEEe
Q 020630 129 DLPAFLFGE 137 (323)
Q Consensus 129 ~~~~~l~G~ 137 (323)
+.++.+.|-
T Consensus 188 gk~vlITgG 196 (399)
T PRK05579 188 GKRVLITAG 196 (399)
T ss_pred CCEEEEeCC
Confidence 556777776
No 276
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=61.91 E-value=53 Score=26.54 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=40.7
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEeccc----c--CcCCC----------------CCCCCCCChHHHH
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAADLL----G--HGRSD----------------GIRCYLGDMEKVA 111 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d~~----G--~G~s~----------------~~~~~~~~~~~~~ 111 (323)
.+.+|++-|-.++.. ..++..|++. +..++..|-. + +|... ..+...++..++.
T Consensus 3 ~~~~i~i~GptgsGK---t~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~ 79 (307)
T PRK00091 3 KPKVIVIVGPTASGK---TALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQ 79 (307)
T ss_pred CceEEEEECCCCcCH---HHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHH
Confidence 345777777665533 2345555544 5567777753 1 11111 1112234677888
Q ss_pred hhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 112 ASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 112 ~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
++....++.+..+ +...+|+
T Consensus 80 ~~a~~~i~~i~~~----gk~pIlv 99 (307)
T PRK00091 80 RDALAAIADILAR----GKLPILV 99 (307)
T ss_pred HHHHHHHHHHHhC----CCCEEEE
Confidence 8888888877665 3344555
No 277
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=61.66 E-value=27 Score=25.48 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=6.1
Q ss_pred CcEEEEeccccCc
Q 020630 83 GYAVFAADLLGHG 95 (323)
Q Consensus 83 g~~vi~~d~~G~G 95 (323)
|+.++.+-+-|.|
T Consensus 33 ~~~~iNLGfsG~~ 45 (178)
T PF14606_consen 33 GLDVINLGFSGNG 45 (178)
T ss_dssp T-EEEEEE-TCCC
T ss_pred CCCeEeeeecCcc
Confidence 5666665555444
No 278
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=61.24 E-value=8.2 Score=31.26 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.5
Q ss_pred CEEEEEechhHHHHHHHHhh
Q 020630 131 PAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+-.++|||+|=+.|+.++..
T Consensus 85 P~~v~GhSlGE~aA~~aaG~ 104 (318)
T PF00698_consen 85 PDAVIGHSLGEYAALVAAGA 104 (318)
T ss_dssp ESEEEESTTHHHHHHHHTTS
T ss_pred cceeeccchhhHHHHHHCCc
Confidence 67899999999988876643
No 279
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=60.98 E-value=12 Score=28.41 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=22.3
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
+.=||++|-|-+.. +..|+++||+|+.+|+-
T Consensus 38 ~~rvLvPgCG~g~D------~~~La~~G~~VvGvDls 68 (218)
T PF05724_consen 38 GGRVLVPGCGKGYD------MLWLAEQGHDVVGVDLS 68 (218)
T ss_dssp SEEEEETTTTTSCH------HHHHHHTTEEEEEEES-
T ss_pred CCeEEEeCCCChHH------HHHHHHCCCeEEEEecC
Confidence 34578888886543 34577889999999963
No 280
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=60.29 E-value=10 Score=29.76 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=27.0
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
..||++|....+.. ....+++.|.++||+++.++
T Consensus 231 G~IILmHd~~~T~~-aL~~iI~~Lk~kGy~fvtl~ 264 (268)
T TIGR02873 231 GAMVLMHPTASSTE-GLEEMITIIKEKGYKIGTIT 264 (268)
T ss_pred CcEEEEcCCccHHH-HHHHHHHHHHHCCCEEEeHH
Confidence 46889997655544 67888999999999998875
No 281
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=59.98 E-value=7.9 Score=28.54 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=24.3
Q ss_pred eEEEEecCCC---CCcchhhHHHHHHHhcCCcEEEEec
Q 020630 56 ATVYMTHGYG---SDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 56 ~~vv~~hG~~---~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
..||++|... .+.. ....+++.|.++||+++.++
T Consensus 152 g~Iil~Hd~~~~~~t~~-~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 152 GDIILLHASDSAKQTVK-ALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CCEEEEeCCCCcHhHHH-HHHHHHHHHHHCCCEEEEHH
Confidence 4699999422 1223 56778889999999998874
No 282
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=59.96 E-value=36 Score=25.65 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=35.3
Q ss_pred ceEEEEecCCCCCcc--hhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHH
Q 020630 55 KATVYMTHGYGSDTG--WMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~--~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~ 120 (323)
+.+|+++||-....- .......+.|.+.|.+|-.-.++|.|.+ ...+...++.++|+.
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~--------i~~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHE--------ISPEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS----------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCC--------CCHHHHHHHHHHHhh
Confidence 458999999875531 1345677788888888888888766654 234555666666654
No 283
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=59.72 E-value=1e+02 Score=25.68 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=56.2
Q ss_pred CceEEEEecCCCCCc------chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCC
Q 020630 54 VKATVYMTHGYGSDT------GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPY 127 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~------~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~ 127 (323)
+...||++||-.-|. ...|..+++.+.++|+ +-.+|.-..|..+ .+++-+.-+..++...
T Consensus 170 ~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~l-ip~~D~AYQGF~~-------GleeDa~~lR~~a~~~------ 235 (396)
T COG1448 170 PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGL-IPFFDIAYQGFAD-------GLEEDAYALRLFAEVG------ 235 (396)
T ss_pred CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeeeehhhhhhcc-------chHHHHHHHHHHHHhC------
Confidence 467899999975432 2379999999988865 4556655444332 2444444444444332
Q ss_pred CCCCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccC
Q 020630 128 RDLPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 128 ~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~ 164 (323)
+-.+|..|+.=..++ |.++ |.++.+++.
T Consensus 236 ---~~~lva~S~SKnfgL-----YgER-VGa~~vva~ 263 (396)
T COG1448 236 ---PELLVASSFSKNFGL-----YGER-VGALSVVAE 263 (396)
T ss_pred ---CcEEEEehhhhhhhh-----hhhc-cceeEEEeC
Confidence 337888887665543 5677 999888864
No 284
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=58.99 E-value=61 Score=22.84 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=42.5
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.+.|.++||.|+-+ |. ...... .++.+++..+...+..=.. ..-+.+.|...|-.++ |.++
T Consensus 15 K~~l~~~L~~~g~eV~D~---G~--~~~~~~--~dYpd~a~~va~~V~~g~~-----~~GIliCGtGiG~sia---ANK~ 79 (148)
T PRK05571 15 KEEIIEHLEELGHEVIDL---GP--DSYDAS--VDYPDYAKKVAEAVVAGEA-----DRGILICGTGIGMSIA---ANKV 79 (148)
T ss_pred HHHHHHHHHHCCCEEEEc---CC--CCCCCC--CCHHHHHHHHHHHHHcCCC-----CEEEEEcCCcHHHHHH---HhcC
Confidence 356788898899988543 21 111101 2566666666655532211 2235566666665544 5677
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++.+..++
T Consensus 80 ~G--IRAA~~~d~ 90 (148)
T PRK05571 80 KG--IRAALCHDT 90 (148)
T ss_pred CC--eEEEEECCH
Confidence 76 777777664
No 285
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=58.73 E-value=0.58 Score=37.05 Aligned_cols=107 Identities=24% Similarity=0.265 Sum_probs=59.7
Q ss_pred cEEEEEecCCCC---CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCC----------CCCCCCC--
Q 020630 41 KLFTQSFLPLDQ---KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSD----------GIRCYLG-- 105 (323)
Q Consensus 41 ~l~~~~~~~~~~---~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~----------~~~~~~~-- 105 (323)
.+....+.|... ...|.+++.||+++... .....+..++..++.++..+....|.+. .......
T Consensus 32 ~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 110 (299)
T COG1073 32 ALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKE-QSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAA 110 (299)
T ss_pred eeeeEEEecCCCCccccCceEEeccCcccccc-CcchHHHHhhhceeEEeeeccccccccccccccccCccccccccchh
Confidence 355555555542 46899999999998866 3333777888888998877643332222 1111100
Q ss_pred ChHHHHhhHHHH-HHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcC
Q 020630 106 DMEKVAASSLSF-FKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 106 ~~~~~~~d~~~~-i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 152 (323)
........+... ....... ..+....|+++|+..+..++...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~ 154 (299)
T COG1073 111 VLLLLSEGVLDKDYRLLGAS----LGPRILAGLSLGGPSAGALLAWGP 154 (299)
T ss_pred heeeeccccccHHHHHHhhh----cCcceEEEEEeeccchHHHhhcch
Confidence 000000111100 1111111 237888899988888888877765
No 286
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.05 E-value=21 Score=28.10 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=27.4
Q ss_pred CCCEEEEEechhHHHHHHHHhh---cCCCCeeEEEEccCccC
Q 020630 129 DLPAFLFGESMGGAATMLMYFQ---SEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a~~---~p~~~v~~~il~~~~~~ 167 (323)
..+++|.|.|+|++-+...-.. .-+. ++++++.+|+..
T Consensus 108 RPkL~l~GeSLGa~g~~~af~~~~~~~~~-vdGalw~GpP~~ 148 (289)
T PF10081_consen 108 RPKLYLYGESLGAYGGEAAFDGLDDLRDR-VDGALWVGPPFF 148 (289)
T ss_pred CCeEEEeccCccccchhhhhccHHHhhhh-cceEEEeCCCCC
Confidence 4579999999998876554322 2344 899999988654
No 287
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.75 E-value=48 Score=26.43 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=28.5
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcC
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGR 96 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~ 96 (323)
..-++++-|.|+. .-+.++..|+++|..++.+|.-..|.
T Consensus 37 ~g~~vLITGgg~G---lGr~ialefa~rg~~~vl~Din~~~~ 75 (300)
T KOG1201|consen 37 SGEIVLITGGGSG---LGRLIALEFAKRGAKLVLWDINKQGN 75 (300)
T ss_pred cCCEEEEeCCCch---HHHHHHHHHHHhCCeEEEEeccccch
Confidence 3457778887754 33578889999999999999765543
No 288
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=57.59 E-value=60 Score=22.61 Aligned_cols=75 Identities=15% Similarity=0.066 Sum_probs=38.7
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.++|.+.||.|+-+-... .. ..++.+++..+...+..=.. ..-+.+.|..+|-.++ |.++
T Consensus 14 K~~i~~~L~~~g~eV~D~G~~~-----~~---~~dy~~~a~~va~~V~~~~~-----d~GIliCgtGiG~~ia---ANK~ 77 (140)
T PF02502_consen 14 KEAIKEYLEEKGYEVIDFGTYS-----ED---SVDYPDFAEKVAEAVASGEA-----DRGILICGTGIGMSIA---ANKV 77 (140)
T ss_dssp HHHHHHHHHHTTEEEEEESESS-----TS---T--HHHHHHHHHHHHHTTSS-----SEEEEEESSSHHHHHH---HHTS
T ss_pred HHHHHHHHHHCCCEEEEeCCCC-----CC---CCCHHHHHHHHHHHHHcccC-----CeEEEEcCCChhhhhH---hhcC
Confidence 3567888888999887553221 11 12566666666555542211 1124445555554443 5677
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |.+....++
T Consensus 78 ~G--IrAa~~~d~ 88 (140)
T PF02502_consen 78 PG--IRAALCSDP 88 (140)
T ss_dssp TT----EEE-SSH
T ss_pred CC--EEEEeeCCH
Confidence 77 777666654
No 289
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=57.04 E-value=91 Score=25.22 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=45.1
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEec----cccC--cCCC----------------CCCCCCCChHHHHh
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAAD----LLGH--GRSD----------------GIRCYLGDMEKVAA 112 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d----~~G~--G~s~----------------~~~~~~~~~~~~~~ 112 (323)
+.++++-|-.++.. ..++-.|+++ |-.||..| |+|. |... .++...++..++..
T Consensus 3 ~~~i~I~GPTAsGK---T~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~ 79 (308)
T COG0324 3 PKLIVIAGPTASGK---TALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQR 79 (308)
T ss_pred ccEEEEECCCCcCH---HHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHH
Confidence 45566666554432 1233344443 66789988 4443 2111 12233467888899
Q ss_pred hHHHHHHHHHhhCCCCCCCEEEEEec
Q 020630 113 SSLSFFKHVRHSEPYRDLPAFLFGES 138 (323)
Q Consensus 113 d~~~~i~~l~~~~~~~~~~~~l~G~S 138 (323)
++...++.+..+ +.-.++||-|
T Consensus 80 ~a~~~i~~i~~r----gk~pIlVGGT 101 (308)
T COG0324 80 DALAAIDDILAR----GKLPILVGGT 101 (308)
T ss_pred HHHHHHHHHHhC----CCCcEEEccH
Confidence 999999999887 3355777765
No 290
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=57.03 E-value=16 Score=29.49 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=18.0
Q ss_pred CEEEEEechhHHHHHHHHhhc
Q 020630 131 PAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
.-.++|-|+|+.++..+|...
T Consensus 44 ~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 44 VDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred CCEEEEECHHHHHHHHHHcCC
Confidence 347899999999999999864
No 291
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=56.62 E-value=13 Score=29.68 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.7
Q ss_pred CEEEEEechhHHHHHHHHhh
Q 020630 131 PAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+-.++|||+|-+.|+.++..
T Consensus 83 p~~~~GhSlGE~aA~~~ag~ 102 (298)
T smart00827 83 PDAVVGHSLGEIAAAYVAGV 102 (298)
T ss_pred ccEEEecCHHHHHHHHHhCC
Confidence 67899999999998877653
No 292
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=56.48 E-value=18 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.3
Q ss_pred CEEEEEechhHHHHHHHHhhcCC
Q 020630 131 PAFLFGESMGGAATMLMYFQSEP 153 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~ 153 (323)
.-.+.|-|+|+.++..++...+.
T Consensus 27 ~d~v~GtSaGAi~aa~~a~g~~~ 49 (172)
T cd07198 27 IDIIAGTSAGAIVAALLASGRDL 49 (172)
T ss_pred CCEEEEECHHHHHHHHHHcCCCH
Confidence 45799999999999999987543
No 293
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=56.45 E-value=66 Score=22.45 Aligned_cols=73 Identities=14% Similarity=0.047 Sum_probs=42.0
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.++|.++||.|+-+ |.+.| .++.+++..+...+..=.. ..-+.+.|...|-.++ |.+.
T Consensus 15 K~~i~~~L~~~G~eV~D~---G~~~~-------~dYpd~a~~va~~V~~~e~-----~~GIliCGtGiG~sia---ANK~ 76 (141)
T TIGR01118 15 KDVIKNFLVDNGFEVIDV---TEGDG-------QDFVDVTLAVASEVQKDEQ-----NLGIVIDAYGAGSFMV---ATKI 76 (141)
T ss_pred HHHHHHHHHHCCCEEEEc---CCCCC-------CCcHHHHHHHHHHHHcCCC-----ceEEEEcCCCHhHhhh---hhcC
Confidence 356788898999988543 22111 2566666666555532111 2235566666665544 5566
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++.+..++
T Consensus 77 ~G--IRAA~~~d~ 87 (141)
T TIGR01118 77 KG--MIAAEVSDE 87 (141)
T ss_pred CC--eEEEEECCH
Confidence 66 777766554
No 294
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=55.62 E-value=54 Score=26.13 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=22.0
Q ss_pred CEEEEEec----------hhHHHHHHHHhhcCCCCeeEEEEccCccCCCC
Q 020630 131 PAFLFGES----------MGGAATMLMYFQSEPNTWTGLIFSAPLFVIPE 170 (323)
Q Consensus 131 ~~~l~G~S----------~Gg~~a~~~a~~~p~~~v~~~il~~~~~~~~~ 170 (323)
++++..|+ .|+..+..+|.+|.- -++.++|.+.+.+
T Consensus 233 KVIigt~avl~NGgl~~~~G~~~vAlaAk~h~v----Pv~VlAp~yKLsP 278 (353)
T KOG1465|consen 233 KVIIGTHAVLANGGLRAPSGVHTVALAAKHHSV----PVIVLAPMYKLSP 278 (353)
T ss_pred eEEEEeeeEecCCCeeccchHHHHHHHHHhcCC----cEEEecchhhcCC
Confidence 67776665 366666666666543 3666777665543
No 295
>PRK10279 hypothetical protein; Provisional
Probab=55.42 E-value=16 Score=29.34 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=18.0
Q ss_pred CEEEEEechhHHHHHHHHhhc
Q 020630 131 PAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
.-.++|-|+|+.++..+|...
T Consensus 34 ~d~i~GtS~GAlvga~yA~g~ 54 (300)
T PRK10279 34 IDIVAGCSIGSLVGAAYACDR 54 (300)
T ss_pred cCEEEEEcHHHHHHHHHHcCC
Confidence 457999999999999998764
No 296
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=55.41 E-value=40 Score=25.20 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=27.8
Q ss_pred CceEEEEecCCCCCcc--hhhHHHHHHHhcCCcEEEEeccccCcC
Q 020630 54 VKATVYMTHGYGSDTG--WMFQKICISYATWGYAVFAADLLGHGR 96 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~--~~~~~~~~~l~~~g~~vi~~d~~G~G~ 96 (323)
..++++++||.....- ..-..+.+.|.+.|..+...-+++-|.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH 187 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGH 187 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SS
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCC
Confidence 4789999999865421 133456777878787666666665443
No 297
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=55.20 E-value=18 Score=26.63 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.4
Q ss_pred CEEEEEechhHHHHHHHHhhcC
Q 020630 131 PAFLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p 152 (323)
.-.++|-|.||.+|..++....
T Consensus 28 ~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 28 KKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred cceEEEECHHHHHHHHHHcCCC
Confidence 3579999999999999987643
No 298
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=54.68 E-value=15 Score=29.41 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.3
Q ss_pred CCEEEEEechhHHHHHHHHhh
Q 020630 130 LPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 130 ~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
.+..++|||+|=+.|+.++..
T Consensus 76 ~P~~v~GhS~GE~aAa~~aG~ 96 (295)
T TIGR03131 76 RPSAVAGYSVGEYAAAVVAGV 96 (295)
T ss_pred CCcEEeecCHHHHHHHHHhCC
Confidence 478899999999988877653
No 299
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=54.40 E-value=13 Score=28.30 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=21.0
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
=||+.|-|.+.. +..|+++||.|+.+|+-
T Consensus 46 rvLvPgCGkg~D------~~~LA~~G~~V~GvDlS 74 (226)
T PRK13256 46 VCLIPMCGCSID------MLFFLSKGVKVIGIELS 74 (226)
T ss_pred eEEEeCCCChHH------HHHHHhCCCcEEEEecC
Confidence 467777775433 34578899999999963
No 300
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=54.24 E-value=28 Score=23.04 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=22.6
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcC-CcEEEEecc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATW-GYAVFAADL 91 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d~ 91 (323)
||++.|..++.. ..+++.|+++ |+.++..|-
T Consensus 1 vI~I~G~~gsGK---ST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGK---STLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSH---HHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCH---HHHHHHHHHHHCCeEEEecc
Confidence 578888887754 2456666665 899999987
No 301
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=53.72 E-value=1.4e+02 Score=25.32 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=46.9
Q ss_pred eEEEEecCCCCC---cchhhHHHHHHHhcCCcEEEEeccccC--cCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCC
Q 020630 56 ATVYMTHGYGSD---TGWMFQKICISYATWGYAVFAADLLGH--GRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDL 130 (323)
Q Consensus 56 ~~vv~~hG~~~~---~~~~~~~~~~~l~~~g~~vi~~d~~G~--G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~ 130 (323)
.++|+++-.... +. ....-...|.+.|+.|+-+..--+ |+.. .+...+.+++++.+...+..-+ ...+.
T Consensus 113 ~plviaPamn~~m~~~p-~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g--~g~~~~~~~i~~~v~~~~~~~~---~~~~~ 186 (390)
T TIGR00521 113 APIILAPAMNENMYNNP-AVQENIKRLKDDGYIFIEPDSGLLACGDEG--KGRLAEPETIVKAAEREFSPKE---DLEGK 186 (390)
T ss_pred CCEEEEeCCChhhcCCH-HHHHHHHHHHHCCcEEECCCCccccccccc--CCCCCCHHHHHHHHHHHHhhcc---ccCCc
Confidence 455666553321 12 334455677778888776652212 3322 1222367777777666554311 11245
Q ss_pred CEEEEEe------------------chhHHHHHHHHhh
Q 020630 131 PAFLFGE------------------SMGGAATMLMYFQ 150 (323)
Q Consensus 131 ~~~l~G~------------------S~Gg~~a~~~a~~ 150 (323)
++.+.|- .||..+|..++.+
T Consensus 187 ~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~ 224 (390)
T TIGR00521 187 RVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKR 224 (390)
T ss_pred eEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHC
Confidence 6777666 3566777666655
No 302
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=53.51 E-value=83 Score=23.88 Aligned_cols=39 Identities=8% Similarity=-0.041 Sum_probs=23.9
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHhcCCcE-EEEeccc
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYATWGYA-VFAADLL 92 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~-vi~~d~~ 92 (323)
..+.|+++.-.+.........+.+.|.+.|+. +..++..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~ 67 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVID 67 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccC
Confidence 35677777666555443556677777777774 5555554
No 303
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=53.30 E-value=14 Score=30.30 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=30.1
Q ss_pred CccceeEEecCCC-cEEEEEecCCCC--------CCceEEEEecCCCCC
Q 020630 28 VRNGKEYFETPNG-KLFTQSFLPLDQ--------KVKATVYMTHGYGSD 67 (323)
Q Consensus 28 ~~~~~~~~~~~~g-~l~~~~~~~~~~--------~~~~~vv~~hG~~~~ 67 (323)
.+.++......|| ++-|..|+++++ -++|+|+++|-+-+.
T Consensus 449 ~pFEkLkmSsDDG~r~LyLDFGg~dGEiqLDLhscpKpiVFIlHsfLSA 497 (506)
T KOG3551|consen 449 HPFEKLKMSSDDGARMLYLDFGGPDGEIQLDLHSCPKPIVFILHSFLSA 497 (506)
T ss_pred ChHHHhccccCCCceEEEEecCCCCccEEeeeccCCCcEEEEehhhhhh
Confidence 3456667778899 999999996542 368999999987643
No 304
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=52.88 E-value=90 Score=23.59 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=38.9
Q ss_pred CccccccccCCccceeEE--ecCCC--cEEEEEecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEe
Q 020630 18 PEEEYYTSQGVRNGKEYF--ETPNG--KLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATW-GYAVFAA 89 (323)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~--~~~~g--~l~~~~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~ 89 (323)
+..+++.-.+...++.-+ ....| .+......+ -+|.+|.+||+... ....++-.+++. |+..++-
T Consensus 157 s~~ef~~LyG~~t~RalvFT~VstGRSPMVAirV~~----lKP~aVVlHGi~~~---~vD~lAikiAe~e~IpLvvT 226 (241)
T COG1709 157 SGLEFYRLYGWTTERALVFTKVSTGRSPMVAIRVSP----LKPAAVVLHGIPPD---NVDELAIKIAEIERIPLVVT 226 (241)
T ss_pred chhhHHHHhcCCcceEEEEEeccCCCCceEEEEccC----CCccEEEEecCCcc---chhHHHHHHHhhcCCceEEe
Confidence 445666666666666433 33445 444444333 38899999998855 234567777765 4555543
No 305
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=52.31 E-value=10 Score=28.91 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=27.5
Q ss_pred ceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccc
Q 020630 55 KATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 55 ~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.|+||++.|+.++. +..-..+...|..+|++|.++.-|
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p 68 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP 68 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC
Confidence 57999999998764 325566777777789999999866
No 306
>PLN02840 tRNA dimethylallyltransferase
Probab=52.18 E-value=97 Score=26.41 Aligned_cols=31 Identities=3% Similarity=-0.071 Sum_probs=23.2
Q ss_pred CCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEec
Q 020630 104 LGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGES 138 (323)
Q Consensus 104 ~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S 138 (323)
.++..++.++....++.+..+ +...+|||-+
T Consensus 89 ~ySv~~F~~~A~~~I~~i~~r----gkiPIvVGGT 119 (421)
T PLN02840 89 DYSVGAFFDDARRATQDILNR----GRVPIVAGGT 119 (421)
T ss_pred ceeHHHHHHHHHHHHHHHHhc----CCCEEEEcCc
Confidence 457888999999999998876 3345666654
No 307
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=52.06 E-value=19 Score=28.96 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=18.8
Q ss_pred CEEEEEechhHHHHHHHHhhcC
Q 020630 131 PAFLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p 152 (323)
.-.+.|-|+|+.++..+|....
T Consensus 40 ~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 40 IDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred ccEEEecCHHHHHHHHHHcCCC
Confidence 5689999999999999998643
No 308
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=51.95 E-value=96 Score=24.13 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=14.8
Q ss_pred EEecCCCCCc-chhhHHHHHHHhcCCcEEEEec
Q 020630 59 YMTHGYGSDT-GWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 59 v~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d 90 (323)
++++|..++. +..-..+...+++.|.++|-++
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC
Confidence 3445544332 2233444555555566655443
No 309
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=51.84 E-value=41 Score=22.51 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=11.3
Q ss_pred HHHHHhcCCcEEEEe
Q 020630 75 ICISYATWGYAVFAA 89 (323)
Q Consensus 75 ~~~~l~~~g~~vi~~ 89 (323)
....|.+.|++|+.+
T Consensus 99 ~~~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 99 VNSRLQELGWRVLRV 113 (117)
T ss_pred HHHHHHHCcCEEEEE
Confidence 344677889999876
No 310
>COG3933 Transcriptional antiterminator [Transcription]
Probab=51.76 E-value=1.2e+02 Score=25.90 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=50.1
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
-.+||+.||....+ ....++..|.+. =-+.++|+|- ..++.+..+.+.+.++..... +=.+
T Consensus 109 v~vIiiAHG~sTAS--SmaevanrLL~~-~~~~aiDMPL----------dvsp~~vle~l~e~~k~~~~~------~Gll 169 (470)
T COG3933 109 VKVIIIAHGYSTAS--SMAEVANRLLGE-EIFIAIDMPL----------DVSPSDVLEKLKEYLKERDYR------SGLL 169 (470)
T ss_pred eeEEEEecCcchHH--HHHHHHHHHhhc-cceeeecCCC----------cCCHHHHHHHHHHHHHhcCcc------CceE
Confidence 46899999988543 456677777776 4689999982 126777777777666665543 3255
Q ss_pred EEechhHHHHHHHH
Q 020630 135 FGESMGGAATMLMY 148 (323)
Q Consensus 135 ~G~S~Gg~~a~~~a 148 (323)
+=-.||....+.=.
T Consensus 170 lLVDMGSL~~f~~~ 183 (470)
T COG3933 170 LLVDMGSLTSFGSI 183 (470)
T ss_pred EEEecchHHHHHHH
Confidence 56678887766433
No 311
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=50.60 E-value=85 Score=22.01 Aligned_cols=75 Identities=12% Similarity=-0.006 Sum_probs=41.1
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.+.|.++||.|+-+- ..+..+ .++.+++..+...+..=.. ..-+.+.|...|-.++ |.++
T Consensus 13 K~~l~~~L~~~g~eV~D~G-----~~~~~~---~dYpd~a~~va~~V~~g~~-----~~GIliCGtGiG~sia---ANK~ 76 (144)
T TIGR00689 13 KSEIIEHLKQKGHEVIDCG-----TLYDER---VDYPDYAKLVADKVVAGEV-----SLGILICGTGIGMSIA---ANKF 76 (144)
T ss_pred HHHHHHHHHHCCCEEEEcC-----CCCCCC---CChHHHHHHHHHHHHcCCC-----ceEEEEcCCcHHHHHH---HhcC
Confidence 3567888999999885432 111111 2566666666655532111 2234455555554443 5677
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++.+..++
T Consensus 77 ~G--Iraa~~~d~ 87 (144)
T TIGR00689 77 KG--IRAALCVDE 87 (144)
T ss_pred CC--eEEEEECCH
Confidence 76 777666554
No 312
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.37 E-value=1.6e+02 Score=25.19 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHH-HHHHHHhhcCCC
Q 020630 76 CISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGA-ATMLMYFQSEPN 154 (323)
Q Consensus 76 ~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~-~a~~~a~~~p~~ 154 (323)
...+..+++.++.+|-+|+... -...++.+..+++...... ...++||--+..+. -...++..+...
T Consensus 292 ~~~l~~~~~D~VLIDTaGr~~r---------d~~~l~eL~~~~~~~~~~~---~~e~~LVLsAt~~~~~~~~~~~~f~~~ 359 (432)
T PRK12724 292 KETLARDGSELILIDTAGYSHR---------NLEQLERMQSFYSCFGEKD---SVENLLVLSSTSSYHHTLTVLKAYESL 359 (432)
T ss_pred HHHHHhCCCCEEEEeCCCCCcc---------CHHHHHHHHHHHHhhcCCC---CCeEEEEEeCCCCHHHHHHHHHHhcCC
Confidence 3344446899999998765422 1244555666665543221 12355554544444 555566656554
Q ss_pred CeeEEEEc
Q 020630 155 TWTGLIFS 162 (323)
Q Consensus 155 ~v~~~il~ 162 (323)
.+.++|+.
T Consensus 360 ~~~glIlT 367 (432)
T PRK12724 360 NYRRILLT 367 (432)
T ss_pred CCCEEEEE
Confidence 57888874
No 313
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=50.25 E-value=18 Score=28.76 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.8
Q ss_pred CEEEEEechhHHHHHHHHhh
Q 020630 131 PAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+..++|||+|=+.|+.++..
T Consensus 84 p~~v~GhS~GE~aAa~~aG~ 103 (290)
T TIGR00128 84 PDFAAGHSLGEYSALVAAGA 103 (290)
T ss_pred CCEEeecCHHHHHHHHHhCC
Confidence 67899999999988877754
No 314
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=50.24 E-value=58 Score=27.34 Aligned_cols=103 Identities=17% Similarity=0.050 Sum_probs=58.4
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCC--CCC---CChHHHHhhHHHHHHHHHhhCCCCC
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIR--CYL---GDMEKVAASSLSFFKHVRHSEPYRD 129 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~--~~~---~~~~~~~~d~~~~i~~l~~~~~~~~ 129 (323)
..+|+++--..+... .-....+.+.+.|+-|+-.|..++-.-.... ... .+++.+.+++......-. .
T Consensus 48 ~~~villSd~~G~~d-~~~s~a~al~~~~Alv~~vd~~~ylaaL~~dd~ecvylisd~Ealsr~~Qr~a~~g~------y 120 (456)
T COG3946 48 QGLVILLSDEAGIGD-QERSRADALLARGALVAPVDLGAYLAALGADDNECVYLISDFEALSREAQRAADLGV------Y 120 (456)
T ss_pred ceeeEEEEcccChhh-hhcchhHHHhhcCCeeeccccchhhhccccCCCcceEEehhHHHHhHHHHHHhhccC------c
Confidence 445555544333322 2234566777788999999988764332211 111 244444444443332211 1
Q ss_pred CCEEEEEechhHHHHHHHHhhcCCCCeeEEEEccC
Q 020630 130 LPAFLFGESMGGAATMLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 130 ~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~il~~~ 164 (323)
..-+|.|---||.++...+.+-|...+.+.+...+
T Consensus 121 r~PVl~g~g~Gg~~A~asaaqSp~atlag~Vsldp 155 (456)
T COG3946 121 RLPVLTGPGQGGTLAYASAAQSPDATLAGAVSLDP 155 (456)
T ss_pred ccceEeecCCCcHHHHHHHhhChhhhhcCccCCCC
Confidence 23468889999999999988877655555554443
No 315
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=50.05 E-value=16 Score=29.59 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=16.7
Q ss_pred EEEEechhHHHHHHHHhhc
Q 020630 133 FLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~~ 151 (323)
.+.|.|+||.+|..++...
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 5899999999999998753
No 316
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=49.92 E-value=52 Score=25.60 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=23.2
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEecccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLG 93 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G 93 (323)
+++|-|..+. .-..+++.|.++|++|+..+...
T Consensus 11 ~vlItG~s~g---IG~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 11 IIIVTGGSSG---IGLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred EEEEeCCCCh---HHHHHHHHHHHCCCEEEEEeCCc
Confidence 4556665543 33567888999999999988653
No 317
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=49.83 E-value=1.1e+02 Score=23.00 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=24.2
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+.|+++.-...........+.+.+.+.|..+..+...
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~ 66 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLI 66 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEecc
Confidence 56777776665543324566677777778877765543
No 318
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=49.79 E-value=28 Score=26.51 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.8
Q ss_pred CEEEEEechhHHHHHHHHhhc
Q 020630 131 PAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
.-.++|-|.|+.++..+|...
T Consensus 29 ~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 29 PSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred ceEEEEeCHHHHHHHHHHcCC
Confidence 346999999999999998754
No 319
>PRK06490 glutamine amidotransferase; Provisional
Probab=49.54 E-value=1.2e+02 Score=23.45 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=44.2
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc-cC--cCC--C-------CCCCCCCChHHHHhhHHHHHHHHH
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL-GH--GRS--D-------GIRCYLGDMEKVAASSLSFFKHVR 122 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~-G~--G~s--~-------~~~~~~~~~~~~~~d~~~~i~~l~ 122 (323)
..++|+.|--.+... .+.+.|.+.|+.+-.++.. |- ... . +.+...++...+...+.++|+...
T Consensus 8 ~~vlvi~h~~~~~~g----~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~ 83 (239)
T PRK06490 8 RPVLIVLHQERSTPG----RVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPL 83 (239)
T ss_pred ceEEEEecCCCCCCh----HHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHH
Confidence 456667787654443 3445555666665554321 10 000 0 111111223345555666666554
Q ss_pred hhCCCCCCCEEEEEechhHHHHHHHH
Q 020630 123 HSEPYRDLPAFLFGESMGGAATMLMY 148 (323)
Q Consensus 123 ~~~~~~~~~~~l~G~S~Gg~~a~~~a 148 (323)
.. ++-++|.|+|..+...+.
T Consensus 84 ~~------~~PvLGIC~G~Qlla~al 103 (239)
T PRK06490 84 KE------NKPFLGICLGAQMLARHL 103 (239)
T ss_pred HC------CCCEEEECHhHHHHHHHc
Confidence 33 456999999999877764
No 320
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=49.27 E-value=61 Score=25.49 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHHH
Q 020630 267 SKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDER 314 (323)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~~ 314 (323)
.+++.+.+ |+..++.+-+..+++.-+++.+...+....+.+||.++
T Consensus 21 lrei~~~L--P~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~ 66 (269)
T COG0796 21 LREIRRQL--PDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLER 66 (269)
T ss_pred HHHHHHHC--CCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHc
No 321
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=49.21 E-value=50 Score=22.54 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=11.2
Q ss_pred HHHHHhcCCcEEEEe
Q 020630 75 ICISYATWGYAVFAA 89 (323)
Q Consensus 75 ~~~~l~~~g~~vi~~ 89 (323)
....|.+.|++|+.+
T Consensus 100 ~~~~L~~~GwrvlvV 114 (150)
T COG3727 100 DIKRLQQLGWRVLVV 114 (150)
T ss_pred HHHHHHHcCCeEEEE
Confidence 345788889998765
No 322
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=49.04 E-value=1e+02 Score=22.40 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=39.9
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.++|.++||.|+-+-- .+..+ .++.+++..+...+.. ... ..-|.+.|...|-.++ |.+.
T Consensus 15 K~~l~~~L~~~G~eV~D~G~-----~~~~~---~dYpd~a~~va~~V~~---g~~--~~GIliCGTGiG~sia---ANKv 78 (171)
T TIGR01119 15 KMEVSEFLKSKGYEVLDVGT-----YDFTR---THYPIFGKKVGEAVVS---GEA--DLGVCICGTGVGINNA---VNKV 78 (171)
T ss_pred HHHHHHHHHHCCCEEEEeCC-----CCCCC---CChHHHHHHHHHHHHc---CCC--CEEEEEcCCcHHHHHH---HhcC
Confidence 35678899999998854321 11111 1456666555555532 211 1224445555554433 5666
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++.+..++
T Consensus 79 ~G--IRAAl~~d~ 89 (171)
T TIGR01119 79 PG--VRSALVRDM 89 (171)
T ss_pred CC--eEEEEeCCH
Confidence 76 766666554
No 323
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=48.96 E-value=24 Score=27.82 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=17.4
Q ss_pred EEEEEechhHHHHHHHHhhc
Q 020630 132 AFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 132 ~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-.+.|-|+|+.++..+|...
T Consensus 40 d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 40 DAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred cEEEEECHHHHHHHHHHcCC
Confidence 46999999999999999763
No 324
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=48.39 E-value=1.1e+02 Score=22.74 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc-CC
Q 020630 75 ICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS-EP 153 (323)
Q Consensus 75 ~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~-p~ 153 (323)
..+.+.++++.++.+|-+|... .-.+..+++..+++.+. ...++++=-+..+.-.+..+..+ ..
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~~------~~~~~LVlsa~~~~~~~~~~~~~~~~ 139 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGRSP---------RDEELLEELKKLLEALN------PDEVHLVLSATMGQEDLEQALAFYEA 139 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHHS------SSEEEEEEEGGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhcC------CccceEEEecccChHHHHHHHHHhhc
Confidence 3445556789999999987652 23455667777777763 23566655555555555444432 22
Q ss_pred CCeeEEEEc
Q 020630 154 NTWTGLIFS 162 (323)
Q Consensus 154 ~~v~~~il~ 162 (323)
.++.++|+-
T Consensus 140 ~~~~~lIlT 148 (196)
T PF00448_consen 140 FGIDGLILT 148 (196)
T ss_dssp SSTCEEEEE
T ss_pred ccCceEEEE
Confidence 127888864
No 325
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=48.02 E-value=31 Score=27.11 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=18.7
Q ss_pred EEEEechhHHHHHHHHhhcCCC
Q 020630 133 FLFGESMGGAATMLMYFQSEPN 154 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~~p~~ 154 (323)
.++|.|.|+.++..++.....+
T Consensus 30 ~i~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 30 LVIGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred EEEEECHHHHhHHHHHhCCcch
Confidence 7999999999999998875543
No 326
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=47.60 E-value=40 Score=26.32 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHhcCCcEEEEecccc-CcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHH----HHHh
Q 020630 75 ICISYATWGYAVFAADLLG-HGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATM----LMYF 149 (323)
Q Consensus 75 ~~~~l~~~g~~vi~~d~~G-~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~----~~a~ 149 (323)
.++.+++.|-.++++.+-- .|.+.+... ..++++.++.+.++.+......+ .++++.| ||-++. .+..
T Consensus 162 ~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~-~~sl~~a~~~~~~i~~aa~~v~~----dii~l~h--GGPI~~p~D~~~~l 234 (268)
T PF09370_consen 162 QARAMAEAGADIIVAHMGLTTGGSIGAKT-ALSLEEAAERIQEIFDAARAVNP----DIIVLCH--GGPIATPEDAQYVL 234 (268)
T ss_dssp HHHHHHHHT-SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC-T----T-EEEEE--CTTB-SHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCccCCCCcCccc-cCCHHHHHHHHHHHHHHHHHhCC----CeEEEEe--CCCCCCHHHHHHHH
Confidence 4556777888999888643 233333222 23899999999999888877643 7888888 777652 2333
Q ss_pred hcCCCCeeEEEEccCc
Q 020630 150 QSEPNTWTGLIFSAPL 165 (323)
Q Consensus 150 ~~p~~~v~~~il~~~~ 165 (323)
++-.. +.+.+--++.
T Consensus 235 ~~t~~-~~Gf~G~Ss~ 249 (268)
T PF09370_consen 235 RNTKG-IHGFIGASSM 249 (268)
T ss_dssp HH-TT-EEEEEESTTT
T ss_pred hcCCC-CCEEecccch
Confidence 33333 7777766543
No 327
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=46.69 E-value=82 Score=26.61 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=42.3
Q ss_pred hhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHH
Q 020630 71 MFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGA 142 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~ 142 (323)
....+.+.+.+.|+.-+=+|+-.....................+.++++.+....+ .+.+=+.|.||.
T Consensus 171 l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P----~v~iE~CssGG~ 238 (394)
T PF02065_consen 171 LFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFP----DVLIENCSSGGG 238 (394)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTT----TSEEEE-BTTBT
T ss_pred HHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCC----CcEEEeccCCCC
Confidence 34456666778899999999864322222111112355666778889999999966 888888888865
No 328
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=46.45 E-value=1.5e+02 Score=23.63 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=48.6
Q ss_pred EecCCCCCcchhhHHHHHHHhcCCcEEEE------eccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEE
Q 020630 60 MTHGYGSDTGWMFQKICISYATWGYAVFA------ADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAF 133 (323)
Q Consensus 60 ~~hG~~~~~~~~~~~~~~~l~~~g~~vi~------~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~ 133 (323)
.+||.-+++. ....|...|++|.+ -+.+|||...+.. ...+..+++..-++...... .-+.+
T Consensus 10 Vv~G~vGn~A-----A~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v----~~~e~l~~~l~~l~~~~~~~---~~dav 77 (281)
T COG2240 10 VVYGSVGNSA-----AIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIV----MPPEQLADLLNGLEAIDKLG---ECDAV 77 (281)
T ss_pred EeecccccHh-----HHHHHHHcCCceeeeceEEecCCCCCCCCCCcC----CCHHHHHHHHHHHHhccccc---ccCEE
Confidence 3566666643 22335556887655 4688888865443 23333444444333321111 22567
Q ss_pred EEEechhHH----HHHHHHhhcCCCCeeEEEEccCccCCCC
Q 020630 134 LFGESMGGA----ATMLMYFQSEPNTWTGLIFSAPLFVIPE 170 (323)
Q Consensus 134 l~G~S~Gg~----~a~~~a~~~p~~~v~~~il~~~~~~~~~ 170 (323)
+-|+=-.+. ++-.+....... -+.+++++|..+-..
T Consensus 78 ltGYlgs~~qv~~i~~~v~~vk~~~-P~~~~l~DPVMGD~g 117 (281)
T COG2240 78 LTGYLGSAEQVRAIAGIVKAVKEAN-PNALYLCDPVMGDPG 117 (281)
T ss_pred EEccCCCHHHHHHHHHHHHHHhccC-CCeEEEeCCcccCCC
Confidence 777632222 222222221222 557899999866444
No 329
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=46.17 E-value=1.7e+02 Score=24.09 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=31.3
Q ss_pred EecCCC-cEEEEEecCCC--CCCceEEEEecCCCCCcchhhHHHHHHHhcC--CcEEEEecccc
Q 020630 35 FETPNG-KLFTQSFLPLD--QKVKATVYMTHGYGSDTGWMFQKICISYATW--GYAVFAADLLG 93 (323)
Q Consensus 35 ~~~~~g-~l~~~~~~~~~--~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~--g~~vi~~d~~G 93 (323)
|..+.+ ..+|...+|+= +..+++=+|+||.|... .-..+.++|.++ +..|+.+|--+
T Consensus 188 f~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGG--TitgvGRylke~~~~~kVv~vdp~~ 249 (362)
T KOG1252|consen 188 FHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGG--TITGVGRYLKEQNPNIKVVGVDPQE 249 (362)
T ss_pred hcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCc--eeechhHHHHHhCCCCEEEEeCCCc
Confidence 334444 56666555421 12355668889887542 223345555443 57788888543
No 330
>PHA02114 hypothetical protein
Probab=45.66 E-value=38 Score=21.52 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=26.3
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
.+||+=--+..+.. .|-.++..|.+.||+|++-.
T Consensus 83 gtivldvn~amsr~-pwi~v~s~le~~g~~vvatq 116 (127)
T PHA02114 83 GTIVLDVNYAMSRA-PWIKVISRLEEAGFNVVATQ 116 (127)
T ss_pred CeEEEEehhhhccC-cHHHHHHHHHhcCceeeehh
Confidence 46676666666666 78888899999999998753
No 331
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=45.24 E-value=32 Score=28.09 Aligned_cols=41 Identities=29% Similarity=0.348 Sum_probs=25.7
Q ss_pred CCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCC
Q 020630 53 KVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRS 97 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s 97 (323)
+.+.++|++-|--+.+. ..+.-+..|++.||.| |+-|+++|
T Consensus 11 ~k~ra~vvVLGDvGRSP-RMqYHA~Sla~~gf~V---dliGy~~s 51 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSP-RMQYHALSLAKLGFQV---DLIGYVES 51 (444)
T ss_pred ccceEEEEEecccCCCh-HHHHHHHHHHHcCCeE---EEEEecCC
Confidence 33555555555444433 4566677899999765 66677766
No 332
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=44.14 E-value=1.2e+02 Score=21.98 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=40.2
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.++|.+.||.|+-+- ..+..+ .++.+++..+...+.. ... ..-|.+.|...|-.++ |.+.
T Consensus 15 K~~l~~~L~~~G~eV~D~G-----~~~~e~---~dYpd~a~~va~~V~~---g~~--d~GIliCGTGiG~sia---ANKv 78 (171)
T PRK08622 15 KMAVSDYLKSKGHEVIDVG-----TYDFTR---THYPIFGKKVGEAVAS---GEA--DLGVCICGTGVGISNA---VNKV 78 (171)
T ss_pred HHHHHHHHHHCCCEEEEcC-----CCCCCC---CChHHHHHHHHHHHHc---CCC--cEEEEEcCCcHHHHHH---HhcC
Confidence 4568888989999885432 111111 2566666665555532 211 1224455555554443 5666
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++.+..++
T Consensus 79 ~G--IRAA~~~d~ 89 (171)
T PRK08622 79 PG--IRSALVRDM 89 (171)
T ss_pred CC--eEEEEeCCH
Confidence 66 777666654
No 333
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=43.77 E-value=39 Score=18.05 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=23.3
Q ss_pred cCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHH
Q 020630 81 TWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKH 120 (323)
Q Consensus 81 ~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~ 120 (323)
+.+|.+.++|+||.-.. + .+.++..+.+..++..
T Consensus 11 ~~~y~~~~pdlpg~~t~-G-----~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 11 DGGYVAYFPDLPGCFTQ-G-----DTLEEALENAKEALEL 44 (48)
T ss_dssp SSSEEEEETTCCTCEEE-E-----SSHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCccChhhc-C-----CCHHHHHHHHHHHHHH
Confidence 35799999999986421 1 2677777777776653
No 334
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=43.65 E-value=91 Score=24.95 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=22.0
Q ss_pred CChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEec
Q 020630 105 GDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGES 138 (323)
Q Consensus 105 ~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S 138 (323)
++..++..+..+.++.+..+ +...+++|-|
T Consensus 68 ~~v~~f~~~a~~~i~~~~~~----g~~pi~vGGT 97 (287)
T TIGR00174 68 YSAADFQTLALNAIADITAR----GKIPLLVGGT 97 (287)
T ss_pred EcHHHHHHHHHHHHHHHHhC----CCCEEEEcCc
Confidence 46778888888888888766 3356777765
No 335
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=43.58 E-value=1.1e+02 Score=21.40 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=40.6
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.++|.++||.|+-+-. +. . . . .++.+++..+...+..-.. ..-+.+.|..+|-.++ |.+.
T Consensus 14 K~~l~~~L~~~g~eV~D~G~--~~-~--~-~--~dYpd~a~~va~~V~~~~~-----~~GIliCGtGiG~sia---ANK~ 77 (143)
T TIGR01120 14 KEEIKAFLVERGVKVIDKGT--WS-S--E-R--TDYPHYAKQVALAVAGGEV-----DGGILICGTGIGMSIA---ANKF 77 (143)
T ss_pred HHHHHHHHHHCCCEEEEeCC--CC-C--C-C--CCHHHHHHHHHHHHHCCCC-----ceEEEEcCCcHHHHHH---HhcC
Confidence 34577888899998854321 11 1 1 1 2566666666655532111 1224455555554443 5667
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++.+..++
T Consensus 78 ~G--Iraa~~~d~ 88 (143)
T TIGR01120 78 AG--IRAALCSEP 88 (143)
T ss_pred CC--eEEEEECCH
Confidence 76 776666554
No 336
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=43.22 E-value=35 Score=25.80 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=18.9
Q ss_pred CEEEEEechhHHHHHHHHhhcC
Q 020630 131 PAFLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p 152 (323)
.-.+.|.|.|+.+|..++...+
T Consensus 27 ~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 27 PDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred CCEEEEECHHHHHHHHHHcCCc
Confidence 3479999999999999998764
No 337
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=43.22 E-value=95 Score=25.66 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=36.4
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHh
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRH 123 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~ 123 (323)
..+|+.+.|.-.++- .+..|.++||.|+.+-+.-+..... ... ..++...|+..+.+.+++
T Consensus 4 ~kV~v~mSGGVDSSV-----aA~lLk~QGyeViGl~m~~~~~~~~-~~C--~s~~d~~da~~va~~LGI 64 (356)
T COG0482 4 KKVLVGMSGGVDSSV-----AAYLLKEQGYEVIGLFMKNWDEDGG-GGC--CSEEDLRDAERVADQLGI 64 (356)
T ss_pred cEEEEEccCCHHHHH-----HHHHHHHcCCeEEEEEEEeeccCCC-CcC--CchhHHHHHHHHHHHhCC
Confidence 456676666553321 2445667899999999887765211 111 334445666667666655
No 338
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.19 E-value=27 Score=23.17 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.1
Q ss_pred hhHHHHHHHhcCCcEEEEeccc
Q 020630 71 MFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+..+++.|+++||.|++.|.-
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecc
Confidence 5667899999999999999964
No 339
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=42.53 E-value=51 Score=29.04 Aligned_cols=83 Identities=19% Similarity=0.138 Sum_probs=44.4
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCc-------EEEEeccccCcCCCCCCCCCCChHHH-----------HhhHHHHH
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGY-------AVFAADLLGHGRSDGIRCYLGDMEKV-----------AASSLSFF 118 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~-------~vi~~d~~G~G~s~~~~~~~~~~~~~-----------~~d~~~~i 118 (323)
.-|++-|.|...--.-+.+...+...|. +++.+|-.|-=..+........-..+ ..++.+++
T Consensus 298 ~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v 377 (559)
T PTZ00317 298 QRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVV 377 (559)
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHH
Confidence 3445556664432244555666666677 89999998843222211000001111 13555666
Q ss_pred HHHHhhCCCCCCCEEEEEech-hHHHHHHH
Q 020630 119 KHVRHSEPYRDLPAFLFGESM-GGAATMLM 147 (323)
Q Consensus 119 ~~l~~~~~~~~~~~~l~G~S~-Gg~~a~~~ 147 (323)
+.++ +-+|+|-|- ||.+.-.+
T Consensus 378 ~~~K--------PtvLIG~S~~~g~Ft~ev 399 (559)
T PTZ00317 378 RFVK--------PTALLGLSGVGGVFTEEV 399 (559)
T ss_pred hccC--------CCEEEEecCCCCCCCHHH
Confidence 5544 679999996 77554433
No 340
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=42.42 E-value=42 Score=24.30 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=18.8
Q ss_pred CEEEEEechhHHHHHHHHhhcCC
Q 020630 131 PAFLFGESMGGAATMLMYFQSEP 153 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~ 153 (323)
.-.++|-|.|+.++..++.....
T Consensus 29 ~d~i~GtSaGAi~aa~~a~g~~~ 51 (175)
T cd07228 29 IDIIAGSSIGALVGALYAAGHLD 51 (175)
T ss_pred eeEEEEeCHHHHHHHHHHcCCCH
Confidence 34799999999999999886543
No 341
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=42.28 E-value=72 Score=24.56 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=42.4
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEE---EEechhHHH-HHHHHhhcCCCCeeEEEEccCccC
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFL---FGESMGGAA-TMLMYFQSEPNTWTGLIFSAPLFV 167 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l---~G~S~Gg~~-a~~~a~~~p~~~v~~~il~~~~~~ 167 (323)
+..++.+++..++.......+ ..+.++ .|+++-|-. |..++...|.. |+++.+++|.-.
T Consensus 18 ~~~~Ls~QL~~wL~~~~~~~~--paRaiIaPHAGY~YcG~~Aa~ay~qvdps~-v~RIFILGPSHH 80 (296)
T KOG3086|consen 18 SGPQLSAQLEGWLSQVTLTKG--PARAIIAPHAGYTYCGSCAAYAYKQVDPSN-VQRIFILGPSHH 80 (296)
T ss_pred CHHHHHHHHHHHHhccCCCCC--CceEEEcCCCCcccchHHHHHHHhhcChhH-eeEEEEecCcce
Confidence 567888899999988887754 335555 478875554 44555566776 999999998654
No 342
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.27 E-value=56 Score=23.72 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=21.2
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
-|++.|.|.+.. .-..+...|...|..+...+
T Consensus 32 ~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 32 RIFVAGAGRSGL-VGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred EEEEEecCHHHH-HHHHHHHHHHhCCCeEEEeC
Confidence 377778776543 44556666777788887764
No 343
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=42.27 E-value=71 Score=22.19 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=26.2
Q ss_pred EEEecCCCCC-cchhhHHHHHHHhcCCcEEEEeccccCcCCC
Q 020630 58 VYMTHGYGSD-TGWMFQKICISYATWGYAVFAADLLGHGRSD 98 (323)
Q Consensus 58 vv~~hG~~~~-~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~ 98 (323)
+|.+-|...+ ....-..++..|.++||+|.++=.-+||+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcc
Confidence 5556665444 3445677889999999999977767776654
No 344
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=42.04 E-value=52 Score=28.11 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=25.5
Q ss_pred ccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCcccccc
Q 020630 249 VPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQG 294 (323)
Q Consensus 249 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 294 (323)
..+++++|+.|+...... .+.. +.....++|+|++|+.-+-
T Consensus 377 tnviFtNG~~DPW~~lgv----~~~~-~~~~~~~~I~g~~Hc~Dl~ 417 (434)
T PF05577_consen 377 TNVIFTNGELDPWRALGV----TSDS-SDSVPAIVIPGGAHCSDLY 417 (434)
T ss_dssp -SEEEEEETT-CCGGGS------S-S-SSSEEEEEETT--TTGGGS
T ss_pred CeEEeeCCCCCCcccccC----CCCC-CCCcccEEECCCeeecccc
Confidence 579999999999876552 1222 2445667899999998764
No 345
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=42.00 E-value=1.2e+02 Score=21.24 Aligned_cols=73 Identities=10% Similarity=-0.006 Sum_probs=41.4
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.+.|.++||.|+ |+ |.. . . .++.+++..+...+..=.. ..-+.+.|...|-.++ |.+.
T Consensus 15 K~~l~~~L~~~G~eV~--D~-G~~--~---~--~dYpd~a~~va~~V~~~~~-----~~GIliCGTGiG~sia---ANK~ 76 (142)
T PRK08621 15 KEVVKDYLEDNKYEVV--DV-TEE--G---A--EDFVDSTLAVAKEVNKSED-----NLGIVIDAYGAGSFMV---ATKI 76 (142)
T ss_pred HHHHHHHHHHCCCEEE--EC-CCC--C---C--CCcHHHHHHHHHHHHcCCC-----ceEEEEcCCChhhhhh---hhcC
Confidence 3567888999999886 44 221 1 1 2566666665555532111 2235566666665544 5566
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++....++
T Consensus 77 ~G--IRAA~~~d~ 87 (142)
T PRK08621 77 KG--MVAAEVSDE 87 (142)
T ss_pred CC--eEEEEECCH
Confidence 66 776666553
No 346
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=41.90 E-value=38 Score=27.35 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.7
Q ss_pred CCCEEEEEechhHHHHHHHHh
Q 020630 129 DLPAFLFGESMGGAATMLMYF 149 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a~ 149 (323)
..+.++.|||+|=+.|+.++.
T Consensus 84 ~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 84 VKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCceeecccHhHHHHHHHcc
Confidence 457799999999999888765
No 347
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=41.81 E-value=1.9e+02 Score=23.41 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=59.1
Q ss_pred EEecCCC-cEEEEEecCCC--CCCceEEEEecCCCCCcchhhHHHHHHHhcC--CcEEEEeccccC--------------
Q 020630 34 YFETPNG-KLFTQSFLPLD--QKVKATVYMTHGYGSDTGWMFQKICISYATW--GYAVFAADLLGH-------------- 94 (323)
Q Consensus 34 ~~~~~~g-~l~~~~~~~~~--~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~--g~~vi~~d~~G~-------------- 94 (323)
+|.++.+ ..|+...++.= .....+=.|+-|.|.. . ...-++++|.++ +.+++++|--|.
T Consensus 144 Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTG-G-TitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~G 221 (300)
T COG0031 144 QFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTG-G-TITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEG 221 (300)
T ss_pred hcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcc-h-hHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCC
Confidence 3445555 66665544421 0112233455555433 2 334456666544 478999987642
Q ss_pred -cCCCCCCCCCCC-hHHH----HhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHH--HHHHhhcCCCCeeEEEEccC
Q 020630 95 -GRSDGIRCYLGD-MEKV----AASSLSFFKHVRHSEPYRDLPAFLFGESMGGAAT--MLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 95 -G~s~~~~~~~~~-~~~~----~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a--~~~a~~~p~~~v~~~il~~~ 164 (323)
|.+-.+.....+ +++. .++..+..+.+..+. =.++|.|-|+.++ +.+|.+.+. =+.+|.+-|
T Consensus 222 IG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~e------GilvG~SsGA~~~aa~~~a~~~~~--g~~IVti~p 291 (300)
T COG0031 222 IGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREE------GLLVGISSGAALAAALKLAKELPA--GKTIVTILP 291 (300)
T ss_pred CCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHh------CeeecccHHHHHHHHHHHHHhcCC--CCeEEEEEC
Confidence 221111111000 1111 144555666666553 3799999999875 445555543 233444433
No 348
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.62 E-value=1.4e+02 Score=21.74 Aligned_cols=85 Identities=14% Similarity=-0.054 Sum_probs=52.1
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCC--CCC--CCChHH--HHhhHHHHHHHHHhhCCCC
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGI--RCY--LGDMEK--VAASSLSFFKHVRHSEPYR 128 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~--~~~--~~~~~~--~~~d~~~~i~~l~~~~~~~ 128 (323)
+..|-++.|..+.- -...++.|+++|-.|+..|+|..+..+.. .+. .+...+ --+|+.+.+...+.+++
T Consensus 8 kglvalvtggasgl---g~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfg-- 82 (260)
T KOG1199|consen 8 KGLVALVTGGASGL---GKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFG-- 82 (260)
T ss_pred cCeeEEeecCcccc---cHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhcc--
Confidence 44666777655432 24567889999999999999976554411 000 001111 12677777777777754
Q ss_pred CCCEEEEEechhHHHHHH
Q 020630 129 DLPAFLFGESMGGAATML 146 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~ 146 (323)
++-+.-.+.|-..+..
T Consensus 83 --rld~~vncagia~a~k 98 (260)
T KOG1199|consen 83 --RLDALVNCAGIAYAFK 98 (260)
T ss_pred --ceeeeeeccceeeeee
Confidence 6777777777655544
No 349
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=41.56 E-value=1.4e+02 Score=21.76 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=39.3
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.++|.+.||.|+-+ |. .+..+ .++.+++..+...+..=.. ..-|.+.|...|-.++ |.+.
T Consensus 15 K~~l~~~L~~~G~eV~D~---G~--~~~~~---~dYpd~a~~va~~V~~g~~-----d~GIliCGTGiG~sia---ANK~ 78 (171)
T PRK12615 15 KMAVSDFLKSKGYDVIDC---GT--YDHTR---THYPIFGKKVGEAVVNGQA-----DLGVCICGTGVGINNA---VNKV 78 (171)
T ss_pred HHHHHHHHHHCCCEEEEc---CC--CCCCC---CChHHHHHHHHHHHHcCCC-----CEEEEEcCCcHHHHHH---HhcC
Confidence 356788898999988543 21 11111 1456666555555532111 1124444554554433 5666
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++.+..++
T Consensus 79 ~G--IRAA~~~d~ 89 (171)
T PRK12615 79 PG--IRSALVRDM 89 (171)
T ss_pred CC--eEEEEeCCH
Confidence 76 766666554
No 350
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=41.54 E-value=64 Score=23.32 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=35.1
Q ss_pred HhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechh
Q 020630 79 YATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMG 140 (323)
Q Consensus 79 l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~G 140 (323)
|.+.|++.+.+|.=..=... .-.+...++.+.++.++..++ ..++.++--|.|
T Consensus 36 Lk~~Gik~li~DkDNTL~~~-------~~~~i~~~~~~~~~~l~~~~~--~~~v~IvSNsaG 88 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPP-------YEDEIPPEYAEWLNELKKQFG--KDRVLIVSNSAG 88 (168)
T ss_pred hhhcCceEEEEcCCCCCCCC-------CcCcCCHHHHHHHHHHHHHCC--CCeEEEEECCCC
Confidence 77889999999976442221 222333556667777776654 336999999986
No 351
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=41.45 E-value=58 Score=25.32 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.2
Q ss_pred EEEEechhHHHHHHHHhhcC
Q 020630 133 FLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~~p 152 (323)
.+.|-|+|+.+|..++...+
T Consensus 33 ~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 33 KISGASAGALAACCLLCDLP 52 (245)
T ss_pred eEEEEcHHHHHHHHHHhCCc
Confidence 39999999999999987644
No 352
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=41.03 E-value=1.5e+02 Score=22.21 Aligned_cols=33 Identities=30% Similarity=0.160 Sum_probs=23.8
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+..+.|.+.. .-+.++..|+++|++|++.|+.
T Consensus 15 k~~~vtGg~sG---IGrAia~~la~~Garv~v~dl~ 47 (256)
T KOG1200|consen 15 KVAAVTGGSSG---IGRAIAQLLAKKGARVAVADLD 47 (256)
T ss_pred ceeEEecCCch---HHHHHHHHHHhcCcEEEEeecc
Confidence 44555555433 3467888999999999999875
No 353
>PRK13690 hypothetical protein; Provisional
Probab=41.02 E-value=77 Score=22.97 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=24.4
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEech
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESM 139 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~ 139 (323)
+++++.+++..+++.+..........+.++|.|.
T Consensus 2 ~~~~i~~~~~~~~~El~~~a~l~~g~i~VvGcST 35 (184)
T PRK13690 2 DLEEIKKQTRQILEELLEQANLKPGQIFVLGCST 35 (184)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEecch
Confidence 3456666777777777666655577999999993
No 354
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=40.90 E-value=35 Score=25.91 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.3
Q ss_pred HHHhcCCcEEEEecc
Q 020630 77 ISYATWGYAVFAADL 91 (323)
Q Consensus 77 ~~l~~~g~~vi~~d~ 91 (323)
..|+++|+.|+++|.
T Consensus 53 ~~LA~~G~~V~avD~ 67 (218)
T PRK13255 53 LWLAEQGHEVLGVEL 67 (218)
T ss_pred HHHHhCCCeEEEEcc
Confidence 346678999999995
No 355
>PRK13529 malate dehydrogenase; Provisional
Probab=40.30 E-value=53 Score=29.00 Aligned_cols=82 Identities=24% Similarity=0.188 Sum_probs=45.0
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCc-------EEEEeccccCcCCCCCCCCCCChHHHH---------------hhH
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGY-------AVFAADLLGHGRSDGIRCYLGDMEKVA---------------ASS 114 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~-------~vi~~d~~G~G~s~~~~~~~~~~~~~~---------------~d~ 114 (323)
.-|++.|.|...--.-+.+...+...|. +++.+|..|.=..+...-. ..-..++ .++
T Consensus 296 ~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~-~~k~~fa~~~~~~~~~~~~~~~~~L 374 (563)
T PRK13529 296 QRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLL-DFQKPYARKREELADWDTEGDVISL 374 (563)
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcch-HHHHHHhhhcccccccccccCCCCH
Confidence 3455667665432244556666666677 8999999985333221100 0011111 245
Q ss_pred HHHHHHHHhhCCCCCCCEEEEEech-hHHHHHHH
Q 020630 115 LSFFKHVRHSEPYRDLPAFLFGESM-GGAATMLM 147 (323)
Q Consensus 115 ~~~i~~l~~~~~~~~~~~~l~G~S~-Gg~~a~~~ 147 (323)
.++++.++ +-+|+|-|- ||.+.-.+
T Consensus 375 ~e~v~~~k--------PtvLIG~S~~~g~Ft~ev 400 (563)
T PRK13529 375 LEVVRNVK--------PTVLIGVSGQPGAFTEEI 400 (563)
T ss_pred HHHHhccC--------CCEEEEecCCCCCCCHHH
Confidence 55555544 678999998 67554443
No 356
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=40.21 E-value=2.3e+02 Score=23.96 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=46.9
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
-.|++.--++.+.. .-+.+++.|.+.|..|..+++.- +|...+++.+... +-+++
T Consensus 249 V~l~Y~smyg~T~~-ma~aiaegl~~~gv~v~~~~~~~------------------~~~~eI~~~i~~a------~~~vv 303 (388)
T COG0426 249 VDLIYDSMYGNTEK-MAQAIAEGLMKEGVDVEVINLED------------------ADPSEIVEEILDA------KGLVV 303 (388)
T ss_pred EEEEEecccCCHHH-HHHHHHHHhhhcCCceEEEEccc------------------CCHHHHHHHHhhc------ceEEE
Confidence 44444445554444 77788999999999999988641 1333334444322 67888
Q ss_pred Eec---------hhHHHHHHHHhhcCCC
Q 020630 136 GES---------MGGAATMLMYFQSEPN 154 (323)
Q Consensus 136 G~S---------~Gg~~a~~~a~~~p~~ 154 (323)
|-+ ++..+....+...+.+
T Consensus 304 GsPT~~~~~~p~i~~~l~~v~~~~~~~k 331 (388)
T COG0426 304 GSPTINGGAHPPIQTALGYVLALAPKNK 331 (388)
T ss_pred ecCcccCCCCchHHHHHHHHHhccCcCc
Confidence 888 5666666666666665
No 357
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=40.11 E-value=49 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=17.6
Q ss_pred CEEEEEechhHHHHHHHHhhc
Q 020630 131 PAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
.-.++|-|.|+.+|..++...
T Consensus 29 ~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 29 IDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred eeEEEEECHHHHHHHHHHcCC
Confidence 347999999999999988653
No 358
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.51 E-value=1.6e+02 Score=25.26 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=46.5
Q ss_pred HHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCC-Ce
Q 020630 78 SYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPN-TW 156 (323)
Q Consensus 78 ~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~-~v 156 (323)
.+.+.+|.|+.+|-.|.=. --+++.+.+.++-+.+. +..+.+|--+|=|.-|...|..+.+. .+
T Consensus 177 ~ak~~~~DvvIvDTAGRl~---------ide~Lm~El~~Ik~~~~------P~E~llVvDam~GQdA~~~A~aF~e~l~i 241 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLH---------IDEELMDELKEIKEVIN------PDETLLVVDAMIGQDAVNTAKAFNEALGI 241 (451)
T ss_pred HHHHcCCCEEEEeCCCccc---------ccHHHHHHHHHHHhhcC------CCeEEEEEecccchHHHHHHHHHhhhcCC
Confidence 4445567888888665321 12444555555555544 45899999999999999999876543 37
Q ss_pred eEEEEc
Q 020630 157 TGLIFS 162 (323)
Q Consensus 157 ~~~il~ 162 (323)
.++|+.
T Consensus 242 tGvIlT 247 (451)
T COG0541 242 TGVILT 247 (451)
T ss_pred ceEEEE
Confidence 888874
No 359
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=39.27 E-value=36 Score=25.69 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=12.6
Q ss_pred HHHhcCCcEEEEecc
Q 020630 77 ISYATWGYAVFAADL 91 (323)
Q Consensus 77 ~~l~~~g~~vi~~d~ 91 (323)
..|+++|+.|+++|.
T Consensus 50 ~~LA~~G~~V~gvD~ 64 (213)
T TIGR03840 50 AWLAEQGHRVLGVEL 64 (213)
T ss_pred HHHHhCCCeEEEEeC
Confidence 456789999999995
No 360
>PRK01254 hypothetical protein; Provisional
Probab=39.24 E-value=98 Score=28.17 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=26.4
Q ss_pred eEEEEecCCC--CCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 56 ATVYMTHGYG--SDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 56 ~~vv~~hG~~--~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.=||++-|=. .+.++...-+.+.|..+||+|-.+.+|
T Consensus 40 ~DiilVtGDAYVDHPsFG~AiigR~Le~~G~rVgIiaQP 78 (707)
T PRK01254 40 CDIIIVTGDAYVDHPSFGMAIIGRMLEAQGFRVGIIAQP 78 (707)
T ss_pred cCEEEEeCcccccCccchHHHHHHHHHHcCCeEEEEeCC
Confidence 3577777732 344444566788888999999998877
No 361
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.10 E-value=44 Score=24.13 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=23.7
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEe
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAA 89 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~ 89 (323)
.+.|+++-|-|.+.. .--..++.|..+|+.|.++
T Consensus 25 ~~~v~il~G~GnNGg-Dgl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 25 GPRVLILCGPGNNGG-DGLVAARHLANRGYNVTVY 58 (169)
T ss_dssp T-EEEEEE-SSHHHH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEECCCCChH-HHHHHHHHHHHCCCeEEEE
Confidence 567777777776655 4445788999999998883
No 362
>PRK09273 hypothetical protein; Provisional
Probab=39.07 E-value=1.7e+02 Score=22.13 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=41.3
Q ss_pred hhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 71 MFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
.+..+.+.|.+.||.|+-+-. + ...... .++.+.+.-+...+. .. .....+++...|-.++ ..|.+
T Consensus 18 i~~~L~~~L~~~G~eV~D~G~--~---~~~~~s-~dYpd~a~~vA~~V~---~g----~~d~GIliCGTGiG~s-iAANK 83 (211)
T PRK09273 18 IYEALKKVADPKGHEVFNYGM--Y---DEEDHQ-LTYVQNGIMASILLN---SK----AVDFVVTGCGTGQGAM-LALNS 83 (211)
T ss_pred HHHHHHHHHHHCCCEEEEeCC--C---CCCCCC-CChHHHHHHHHHHHH---cC----CCCEEEEEcCcHHHHH-HHHhc
Confidence 577788889999998854432 1 111101 256665555555443 22 1234444444433332 33567
Q ss_pred cCCCCeeEEEEccC
Q 020630 151 SEPNTWTGLIFSAP 164 (323)
Q Consensus 151 ~p~~~v~~~il~~~ 164 (323)
+|. |.+..+.++
T Consensus 84 ~pG--Iraalc~d~ 95 (211)
T PRK09273 84 FPG--VVCGYCIDP 95 (211)
T ss_pred CCC--eEEEEeCCH
Confidence 777 666666654
No 363
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=38.43 E-value=52 Score=25.27 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=18.1
Q ss_pred EEEEEechhHHHHHHHHhhcC
Q 020630 132 AFLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 132 ~~l~G~S~Gg~~a~~~a~~~p 152 (323)
-.+.|-|.|+.++..++...+
T Consensus 31 ~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 31 TPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred CEEEEEcHHHHHHHHHHcCCC
Confidence 479999999999999998744
No 364
>PTZ00445 p36-lilke protein; Provisional
Probab=38.03 E-value=1.1e+02 Score=23.16 Aligned_cols=66 Identities=15% Similarity=0.006 Sum_probs=40.5
Q ss_pred hhHHHHHHHhcCCcEEEEeccccC------cCCCCCC-CCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechh
Q 020630 71 MFQKICISYATWGYAVFAADLLGH------GRSDGIR-CYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMG 140 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~G~------G~s~~~~-~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~G 140 (323)
.-+.+.+.|.+.|.++++.|+--. |.-..+. ....-......++..++..+... +-++.||-+|--
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~----~I~v~VVTfSd~ 102 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNS----NIKISVVTFSDK 102 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHC----CCeEEEEEccch
Confidence 445678889999999999997532 1111111 00001222346677788888765 558999999843
No 365
>PRK06523 short chain dehydrogenase; Provisional
Probab=37.68 E-value=1e+02 Score=23.87 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=22.5
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+++.|..+. .=..+++.|+++|++|+..+..
T Consensus 11 ~vlItGas~g---IG~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 11 RALVTGGTKG---IGAATVARLLEAGARVVTTARS 42 (260)
T ss_pred EEEEECCCCc---hhHHHHHHHHHCCCEEEEEeCC
Confidence 4566665543 2346788888899999998754
No 366
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=37.60 E-value=62 Score=25.09 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.8
Q ss_pred EEEEechhHHHHHHHHhhcC
Q 020630 133 FLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~~p 152 (323)
.+.|-|.|+.++..++...+
T Consensus 34 ~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 34 RIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred EEEEEcHHHHHHHHHHhCCC
Confidence 79999999999999988654
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=36.85 E-value=2.4e+02 Score=23.28 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=36.6
Q ss_pred cCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC-CCeeEE
Q 020630 81 TWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP-NTWTGL 159 (323)
Q Consensus 81 ~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-~~v~~~ 159 (323)
..|+.++.+|-.|.... -..+.+.+..+.+.+. ...+++|.-+.-|.-+...+..+.. ..+.++
T Consensus 220 ~~~~DvVLIDTaGr~~~---------~~~lm~eL~~i~~~~~------pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~gi 284 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHT---------DANLMDELKKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGV 284 (336)
T ss_pred hCCCCEEEEECCCccCC---------cHHHHHHHHHHHHhhC------CceEEEeeccccchhHHHHHHHHHhcCCCCEE
Confidence 34678888887765432 2333445555544433 2245666666666666655554321 226677
Q ss_pred EEc
Q 020630 160 IFS 162 (323)
Q Consensus 160 il~ 162 (323)
|+.
T Consensus 285 IlT 287 (336)
T PRK14974 285 ILT 287 (336)
T ss_pred EEe
Confidence 764
No 368
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=36.85 E-value=1e+02 Score=24.59 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=20.6
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEe
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGE 137 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~ 137 (323)
......+.+.+.|+....+ ..+++|+||
T Consensus 194 ~~~~Ql~WL~~~L~~a~~~----~~~v~I~~H 221 (296)
T cd00842 194 DPAGQLQWLEDELQEAEQA----GEKVWIIGH 221 (296)
T ss_pred CHHHHHHHHHHHHHHHHHC----CCeEEEEec
Confidence 3466778888888877655 447889988
No 369
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.57 E-value=2.2e+02 Score=22.65 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=40.2
Q ss_pred CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE-EEechhHHHHHHHHhhcCCCCeeEEEE
Q 020630 83 GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL-FGESMGGAATMLMYFQSEPNTWTGLIF 161 (323)
Q Consensus 83 g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l-~G~S~Gg~~a~~~a~~~p~~~v~~~il 161 (323)
++.++.+|-+|..... ....+.+.++++... ...+++ +.-++++.-+...+..+....+.++|+
T Consensus 154 ~~D~ViIDt~Gr~~~~---------~~~l~el~~~~~~~~------~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 154 RVDYILIDTAGKNYRA---------SETVEEMIETMGQVE------PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred CCCEEEEECCCCCcCC---------HHHHHHHHHHHhhhC------CCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 6899999988764321 223344445544332 223454 445678878878877766555888887
Q ss_pred c
Q 020630 162 S 162 (323)
Q Consensus 162 ~ 162 (323)
.
T Consensus 219 T 219 (270)
T PRK06731 219 T 219 (270)
T ss_pred E
Confidence 4
No 370
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=36.31 E-value=89 Score=26.34 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=35.1
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCC
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRS 97 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s 97 (323)
..++.|-+--+|.+.. .-..+.+.|.++||.|++|.--|.|..
T Consensus 183 ~~kp~I~iTmfGvTTp-~V~~~~~~Le~~G~Ev~VFHAtG~GG~ 225 (403)
T PF06792_consen 183 EDKPLIGITMFGVTTP-CVDAIRERLEEEGYEVLVFHATGTGGR 225 (403)
T ss_pred CCCcEEEEECCCCcHH-HHHHHHHHHHhcCCeEEEEcCCCCchH
Confidence 3456777777877655 778888999999999999999999865
No 371
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=36.25 E-value=44 Score=28.45 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=19.5
Q ss_pred CEEEEEechhHHHHHHHHhhcCCC
Q 020630 131 PAFLFGESMGGAATMLMYFQSEPN 154 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~~ 154 (323)
+-++.|-|.|+.+|..++...++.
T Consensus 102 p~vIsGTSaGAivAal~as~~~ee 125 (421)
T cd07230 102 PRIISGSSAGSIVAAILCTHTDEE 125 (421)
T ss_pred CCEEEEECHHHHHHHHHHcCCHHH
Confidence 447999999999999999865443
No 372
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.07 E-value=1.2e+02 Score=26.32 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=49.9
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEec
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGES 138 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S 138 (323)
+|--|+|.+....-..-+++-..+||.|+.+|--|.-.. -+.+...+..+++.-. +..++.||--
T Consensus 442 lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~---------~~~lm~~l~k~~~~~~------pd~i~~vgea 506 (587)
T KOG0781|consen 442 LFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHN---------NAPLMTSLAKLIKVNK------PDLILFVGEA 506 (587)
T ss_pred HHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccC---------ChhHHHHHHHHHhcCC------CceEEEehhh
Confidence 344566655443334444555567999999998764322 2223334444444333 4478888888
Q ss_pred hhHHHHHHHHhh---------cCCCCeeEEEEc
Q 020630 139 MGGAATMLMYFQ---------SEPNTWTGLIFS 162 (323)
Q Consensus 139 ~Gg~~a~~~a~~---------~p~~~v~~~il~ 162 (323)
+=|.=++.-+.. .|.. |+++++.
T Consensus 507 lvg~dsv~q~~~fn~al~~~~~~r~-id~~~lt 538 (587)
T KOG0781|consen 507 LVGNDSVDQLKKFNRALADHSTPRL-IDGILLT 538 (587)
T ss_pred hhCcHHHHHHHHHHHHHhcCCCccc-cceEEEE
Confidence 766655543332 2334 7777764
No 373
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=35.98 E-value=40 Score=29.74 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=18.5
Q ss_pred CCEEEEEechhHHHHHHHHhhc
Q 020630 130 LPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 130 ~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
.+-.++|||+|=+.|+.+|.-.
T Consensus 265 ~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 265 KPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred CCCEEeecCHHHHHHHHHhCCC
Confidence 3679999999999998888754
No 374
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=35.88 E-value=1.8e+02 Score=25.49 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=46.4
Q ss_pred ceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhh-HHHHHHHHHhhCCCCCCCE
Q 020630 55 KATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAAS-SLSFFKHVRHSEPYRDLPA 132 (323)
Q Consensus 55 ~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d-~~~~i~~l~~~~~~~~~~~ 132 (323)
.|+||++-|+-++. +.....+...|..+|++|+++..| +.++...+ +-.+-..+-. .+.+
T Consensus 39 ~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P-------------~~eE~~~~flwRfw~~lP~-----~G~I 100 (493)
T TIGR03708 39 FPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRP-------------SDEERERPPMWRFWRRLPP-----KGKI 100 (493)
T ss_pred CeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCC-------------CHHHhcCcHHHHHHHhCCC-----CCeE
Confidence 78999999997663 336678889999999999999877 33333333 3334444433 3367
Q ss_pred EEEEechhHH
Q 020630 133 FLFGESMGGA 142 (323)
Q Consensus 133 ~l~G~S~Gg~ 142 (323)
.|+=-|+=+-
T Consensus 101 ~IFdRSWY~~ 110 (493)
T TIGR03708 101 GIFFGSWYTR 110 (493)
T ss_pred EEEcCcccch
Confidence 7776675443
No 375
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=35.82 E-value=1.2e+02 Score=19.49 Aligned_cols=68 Identities=10% Similarity=-0.024 Sum_probs=40.6
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhh
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHS 124 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~ 124 (323)
.-||=++-...+.. .+..+-..|...||....-|--|.-.--+...+...-..-.+++.++++.+...
T Consensus 8 ~YVVt~~~~e~~l~-d~~~L~~~lt~~GF~~tl~D~~G~~HeLgtntfgl~S~l~~~eV~~la~~lae~ 75 (96)
T PF11080_consen 8 RYVVTFEYQEAGLT-DINELNNHLTRAGFSTTLTDEDGNPHELGTNTFGLISALSAEEVAQLARGLAES 75 (96)
T ss_pred EEEEEEEeccCChH-HHHHHHHHHHhcCceeEEecCCCCEeecCCCeEEEEecCCHHHHHHHHHHHhhh
Confidence 34555555554444 678888999999999999998876443333222111112235666666666543
No 376
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=35.70 E-value=1.7e+02 Score=23.39 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=26.2
Q ss_pred eEEEEecCCC--CCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 56 ATVYMTHGYG--SDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 56 ~~vv~~hG~~--~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.=||++-|=. .+..+.-.-+.+.|.++||+|-.+-+|
T Consensus 17 lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQP 55 (302)
T PF08497_consen 17 LDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQP 55 (302)
T ss_pred ccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCC
Confidence 4577777732 334444456788888999999988877
No 377
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=35.68 E-value=1.3e+02 Score=19.93 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=30.9
Q ss_pred EEecCCCCCcch-hhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHh
Q 020630 59 YMTHGYGSDTGW-MFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRH 123 (323)
Q Consensus 59 v~~hG~~~~~~~-~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~ 123 (323)
|++||-.|.... .-..+++.+ |+.++.+|..-...+ ...+..+.+..+++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~--------~~~~~~~~i~~~~~~~~~ 55 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS--------YAGDSEQKIRDFFKKAKK 55 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS--------STTHHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc--------cccccccccccccccccc
Confidence 688998776432 223344433 688888887654422 233444566666666544
No 378
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=35.62 E-value=2.3e+02 Score=22.69 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHHHHHhcCCcE--EEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHH
Q 020630 74 KICISYATWGYA--VFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGA 142 (323)
Q Consensus 74 ~~~~~l~~~g~~--vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~ 142 (323)
...+.+.+.|.. =+.+| ||.|.+. +.++- -.+..-++.++.- ..-+++|+|-=..
T Consensus 167 ~~i~~a~~~GI~~~~IilD-PGiGF~k-------~~~~n-~~ll~~l~~l~~l-----g~Pilvg~SRKsf 223 (282)
T PRK11613 167 EQIARCEAAGIAKEKLLLD-PGFGFGK-------NLSHN-YQLLARLAEFHHF-----NLPLLVGMSRKSM 223 (282)
T ss_pred HHHHHHHHcCCChhhEEEe-CCCCcCC-------CHHHH-HHHHHHHHHHHhC-----CCCEEEEecccHH
Confidence 344455667875 67888 4777543 23222 2233333444422 1347899994433
No 379
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=35.57 E-value=2.5e+02 Score=23.08 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=11.3
Q ss_pred CCCEEEEEechhHHH
Q 020630 129 DLPAFLFGESMGGAA 143 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~ 143 (323)
..+++|+=|+.=|..
T Consensus 136 ~~~l~lvIHnIDg~~ 150 (326)
T PF04084_consen 136 PPPLYLVIHNIDGPS 150 (326)
T ss_pred CCceEEEEECCCChh
Confidence 348999999986654
No 380
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=35.48 E-value=1.3e+02 Score=24.39 Aligned_cols=65 Identities=14% Similarity=-0.015 Sum_probs=36.9
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhh
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHS 124 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~ 124 (323)
...+||.+.|.-.+ . --+..|+++||.|..+=++..-.-+ ........+.-.+|+..+.+.|.+.
T Consensus 5 ~~~VvvamSgGVDS-s----Vaa~Ll~~~g~~v~gv~M~nWd~~d-e~~s~cp~e~D~~da~~Vc~~LnI~ 69 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDS-S----VAARLLAARGYNVTGVFMKNWDSLD-EFGSQCPAERDWKDAKRVCKQLNIP 69 (377)
T ss_pred cceEEEEecCCchH-H----HHHHHHHhcCCCeeEEeeecccccc-ccccCCCchhhHHHHHHHHHHhCCe
Confidence 35577777665533 2 1244577889999988887762222 1111123444556666666666553
No 381
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.37 E-value=2.7e+02 Score=23.81 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=39.9
Q ss_pred hhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEec
Q 020630 71 MFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGES 138 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S 138 (323)
..+.+...+.+...+++.+|---.=.|+.......+..+.-+-..++++..+.. +..++++||=
T Consensus 156 ~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~----~i~~fiVGHV 219 (456)
T COG1066 156 NLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTK----NIAIFIVGHV 219 (456)
T ss_pred CHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHc----CCeEEEEEEE
Confidence 345566677777788999996544334332222235666555556666666665 4478999995
No 382
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=35.30 E-value=65 Score=21.55 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=23.3
Q ss_pred CEEEEE-echhHHHHHHHHhhcCCCCeeEEEEcc
Q 020630 131 PAFLFG-ESMGGAATMLMYFQSEPNTWTGLIFSA 163 (323)
Q Consensus 131 ~~~l~G-~S~Gg~~a~~~a~~~p~~~v~~~il~~ 163 (323)
++.|+| ..+.|.-.+.+...+|. +.-+.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~--~e~~~~~~ 32 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD--FELVALVS 32 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST--EEEEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC--ccEEEeee
Confidence 478999 88888888888888888 55444444
No 383
>PRK11460 putative hydrolase; Provisional
Probab=35.12 E-value=1.9e+02 Score=22.12 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=26.3
Q ss_pred ceEEEEecCCCCCcc--hhhHHHHHHHhcCCcEEEEeccccCcC
Q 020630 55 KATVYMTHGYGSDTG--WMFQKICISYATWGYAVFAADLLGHGR 96 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~--~~~~~~~~~l~~~g~~vi~~d~~G~G~ 96 (323)
.++|+++||-....- ..-..+.+.|.+.|..+-..-++|.|.
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH 191 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGH 191 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 568899999775521 133456677777777665555564443
No 384
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=34.88 E-value=1.7e+02 Score=20.82 Aligned_cols=75 Identities=12% Similarity=0.028 Sum_probs=41.8
Q ss_pred hHHHHHHHhc--CCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHh
Q 020630 72 FQKICISYAT--WGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYF 149 (323)
Q Consensus 72 ~~~~~~~l~~--~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 149 (323)
-..+.++|.+ .||.|+-+ |.....+ .++.+++..+...+.. ... ..-+.+.|..+|-.++ |.
T Consensus 17 K~~l~~~L~~~~~g~eV~D~-----G~~~~~~---~dYp~~a~~va~~V~~---~~~--~~GIliCGtGiG~sia---AN 80 (151)
T PTZ00215 17 KNEIIDYIKNKGKEYKIEDM-----GTYTAES---VDYPDFAEKVCEEVLK---GEA--DTGILVCGSGIGISIA---AN 80 (151)
T ss_pred HHHHHHHHHhccCCCEEEEc-----CCCCCCC---CCHHHHHHHHHHHHhc---CCC--cEEEEEcCCcHHHHHH---Hh
Confidence 3567888988 89988643 2111111 2566666665555532 211 2235566666665544 56
Q ss_pred hcCCCCeeEEEEccC
Q 020630 150 QSEPNTWTGLIFSAP 164 (323)
Q Consensus 150 ~~p~~~v~~~il~~~ 164 (323)
++|. |++.+..++
T Consensus 81 K~~G--IRAa~~~d~ 93 (151)
T PTZ00215 81 KVKG--IRCALCHDH 93 (151)
T ss_pred cCCC--eEEEEECCH
Confidence 6676 777766654
No 385
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=34.48 E-value=38 Score=26.55 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=11.6
Q ss_pred CCCEEEEEechhHH
Q 020630 129 DLPAFLFGESMGGA 142 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~ 142 (323)
...|+++|||+|..
T Consensus 234 i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 234 IDEIIIYGHSLGEV 247 (270)
T ss_pred CCEEEEEeCCCchh
Confidence 34899999999974
No 386
>PRK02399 hypothetical protein; Provisional
Probab=34.36 E-value=99 Score=26.07 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=33.0
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCC
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRS 97 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s 97 (323)
.+++|-+-=+|.+.. +-..+.+.|.++||.|++|.--|.|..
T Consensus 185 ~kp~Ig~TmfGvTtp-~v~~~~~~Le~~GyEvlVFHATG~GGr 226 (406)
T PRK02399 185 DKPLIGLTMFGVTTP-CVQAAREELEARGYEVLVFHATGTGGR 226 (406)
T ss_pred CCceEEEecCCCcHH-HHHHHHHHHHhCCCeEEEEcCCCCchH
Confidence 445566666665554 677888999999999999999999876
No 387
>PRK00865 glutamate racemase; Provisional
Probab=34.18 E-value=1.4e+02 Score=23.43 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=35.0
Q ss_pred hhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 265 TSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
...+.+.+.+ |+..++.+-+..|++.-+++.+....+...+.+||.+
T Consensus 19 tvl~~i~~~l--p~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~ 65 (261)
T PRK00865 19 TVLREIRRLL--PDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLE 65 (261)
T ss_pred HHHHHHHHHC--CCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4456677777 7788888888889999877776666666666777764
No 388
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=34.11 E-value=1.8e+02 Score=20.90 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=37.7
Q ss_pred cccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 248 TVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 248 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+.-++++..--|.-.+...++++.+.+ .+.++.+|--+|.... .+....+.+.+..++.+
T Consensus 39 ~yD~i~lG~w~d~G~~d~~~~~fl~~l--~~KkV~lF~T~G~~~~----s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 39 DYDLIFLGFWIDKGTPDKDMKEFLKKL--KGKKVALFGTAGAGPD----SEYAKKILKNVEALLPK 98 (160)
T ss_pred CCCEEEEEcCccCCCCCHHHHHHHHHc--cCCeEEEEEecCCCCc----hHHHHHHHHHHHHhhcc
Confidence 345666666677777777777777777 4456666665555544 45556666666666543
No 389
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=33.62 E-value=1.2e+02 Score=24.88 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=21.0
Q ss_pred hhHHHHHHHhcCCcEEEEeccccCcCCC
Q 020630 71 MFQKICISYATWGYAVFAADLLGHGRSD 98 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~G~G~s~ 98 (323)
.-..+++.|.++|++|..+- ||+|.+.
T Consensus 67 ~v~~L~~~l~~~g~~~~ils-RGYg~~~ 93 (325)
T PRK00652 67 VVIALAEQLQARGLKPGVVS-RGYGGKL 93 (325)
T ss_pred HHHHHHHHHHHCCCeEEEEC-CCCCCCc
Confidence 55678888888999877665 8998765
No 390
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=33.56 E-value=1.7e+02 Score=25.11 Aligned_cols=69 Identities=9% Similarity=0.081 Sum_probs=42.0
Q ss_pred HhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC-CCee
Q 020630 79 YATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP-NTWT 157 (323)
Q Consensus 79 l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-~~v~ 157 (323)
+.+.+|.++.+|-+|.-. .-+.+.+.+..+.+... +..+++|--++-|.-+...|..+.+ ..+.
T Consensus 178 ~~~~~~DvViIDTaGr~~---------~d~~lm~El~~i~~~~~------p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~ 242 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK---------QEDSLFEEMLQVAEAIQ------PDNIIFVMDGSIGQAAEAQAKAFKDSVDVG 242 (429)
T ss_pred HHhCCCCEEEEECCCCCc---------chHHHHHHHHHHhhhcC------CcEEEEEeccccChhHHHHHHHHHhccCCc
Confidence 334579999999987432 22334455555544432 3367788778777777666665532 1277
Q ss_pred EEEEc
Q 020630 158 GLIFS 162 (323)
Q Consensus 158 ~~il~ 162 (323)
++|+.
T Consensus 243 g~IlT 247 (429)
T TIGR01425 243 SVIIT 247 (429)
T ss_pred EEEEE
Confidence 88873
No 391
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=33.49 E-value=1.8e+02 Score=20.68 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcC
Q 020630 73 QKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 73 ~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 152 (323)
..+.+.|.+.||.|+-+ -.+... .. .++.+++..+.+.+..-.. +.-+.+.|...|..++ |.+.|
T Consensus 16 ~~I~~~Lk~~g~~v~D~--G~~~~~---~~--~dyp~~a~~va~~v~~~~~-----d~GIliCGTGiG~~ia---ANKv~ 80 (151)
T COG0698 16 EIIIDHLKSKGYEVIDF--GTYTDE---GS--VDYPDYAKKVAEAVLNGEA-----DLGILICGTGIGMSIA---ANKVP 80 (151)
T ss_pred HHHHHHHHHCCCEEEec--cccCCC---CC--cchHHHHHHHHHHHHcCCC-----CeeEEEecCChhHHHH---hhccC
Confidence 45778888889988743 221111 00 1455555555544432111 2235566666665554 45666
Q ss_pred CCCeeEEEEccC
Q 020630 153 PNTWTGLIFSAP 164 (323)
Q Consensus 153 ~~~v~~~il~~~ 164 (323)
. |.+....++
T Consensus 81 G--iraAl~~D~ 90 (151)
T COG0698 81 G--IRAALVSDP 90 (151)
T ss_pred C--eEEEEecCH
Confidence 6 666665554
No 392
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=33.32 E-value=1.9e+02 Score=26.32 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=29.6
Q ss_pred CCceEEEEecCCCCCcc--hhhHHHHHHHhcCCcEEEEeccccCcC
Q 020630 53 KVKATVYMTHGYGSDTG--WMFQKICISYATWGYAVFAADLLGHGR 96 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~~--~~~~~~~~~l~~~g~~vi~~d~~G~G~ 96 (323)
+-+.+++++||.....- ..-..+...|..+|..|-..-+|+-|.
T Consensus 549 ~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H 594 (620)
T COG1506 549 NIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGH 594 (620)
T ss_pred ccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCc
Confidence 44689999999875432 133456777877888877766665443
No 393
>COG0218 Predicted GTPase [General function prediction only]
Probab=33.31 E-value=47 Score=24.70 Aligned_cols=64 Identities=13% Similarity=0.320 Sum_probs=35.2
Q ss_pred hcCCcccccEEEEeeCCCcccCchhH---HHHHHHhc-CCCCc--EEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 242 DNFSKVTVPFLTVHGTADGVTCPTSS---KLLYEKAS-SADKS--IKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 242 ~~~~~~~~P~l~i~g~~D~~~~~~~~---~~~~~~~~-~~~~~--~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+.+.....|++++.-.-|.+-..+.. ....+.+. .+... +..++-... ...+++...|.+|+..
T Consensus 129 ~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k--------~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 129 EFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKK--------KGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccc--------cCHHHHHHHHHHHhhc
Confidence 34455688999999999998654443 23333331 11122 333332222 2246677777777654
No 394
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.26 E-value=92 Score=23.67 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=25.2
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+.+|++-|.... . .-..++..|+++||.|++--.+
T Consensus 6 ~~k~VlItgcs~G-G-IG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 6 QPKKVLITGCSSG-G-IGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred CCCeEEEeecCCc-c-hhHHHHHHHHhCCeEEEEEccc
Confidence 4566777775533 2 3346888999999999987654
No 395
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=32.61 E-value=73 Score=23.43 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=18.2
Q ss_pred EecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 60 MTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 60 ~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+.|.|- .--.++..|++.|++|+.+|.-
T Consensus 4 ~ViGlGy----vGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 4 AVIGLGY----VGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEE--ST----THHHHHHHHHHTTSEEEEE-S-
T ss_pred EEECCCc----chHHHHHHHHhCCCEEEEEeCC
Confidence 4446663 2235777899999999999964
No 396
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=32.28 E-value=52 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=16.6
Q ss_pred CEEEEEechhHHHHHHHHhhc
Q 020630 131 PAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
--.+.|-|.||.+|+.++...
T Consensus 28 ~d~i~GtS~Gal~a~~~~~~~ 48 (204)
T PF01734_consen 28 FDVISGTSAGALNAALLALGY 48 (204)
T ss_dssp -SEEEEECCHHHHHHHHHTC-
T ss_pred ccEEEEcChhhhhHHHHHhCC
Confidence 446999999999998887763
No 397
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=32.12 E-value=1.6e+02 Score=22.50 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=21.7
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEecccc
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAADLLG 93 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G 93 (323)
+++-|..+. .=..+++.|.++|++|+..+...
T Consensus 11 vlItGas~~---iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 11 VWVTGAAQG---IGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred EEEeCCCch---HHHHHHHHHHHCCCEEEEEecch
Confidence 445554433 33457788888999999998653
No 398
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=32.11 E-value=1.5e+02 Score=19.43 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=42.0
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEE
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAF 133 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~ 133 (323)
..|+|||.--+..-.. ....+...+.. .+.|+-+|...+| .++...+..+..... -..++
T Consensus 13 ~~~VVifSKs~C~~c~-~~k~ll~~~~v-~~~vvELD~~~~g----------------~eiq~~l~~~tg~~t--vP~vF 72 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCH-RAKELLSDLGV-NPKVVELDEDEDG----------------SEIQKALKKLTGQRT--VPNVF 72 (104)
T ss_pred cCCEEEEECCcCchHH-HHHHHHHhCCC-CCEEEEccCCCCc----------------HHHHHHHHHhcCCCC--CCEEE
Confidence 3678888774442222 22223332222 3677777765333 134444444433222 33678
Q ss_pred EEEechhHHHHHHHHhhc
Q 020630 134 LFGESMGGAATMLMYFQS 151 (323)
Q Consensus 134 l~G~S~Gg~~a~~~a~~~ 151 (323)
|-|.+.||.--+......
T Consensus 73 I~Gk~iGG~~dl~~lh~~ 90 (104)
T KOG1752|consen 73 IGGKFIGGASDLMALHKS 90 (104)
T ss_pred ECCEEEcCHHHHHHHHHc
Confidence 889999998766655543
No 399
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=32.04 E-value=45 Score=27.47 Aligned_cols=18 Identities=22% Similarity=0.312 Sum_probs=16.0
Q ss_pred EEEEechhHHHHHHHHhh
Q 020630 133 FLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~ 150 (323)
.+.|.|.||.+|..++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 589999999999999864
No 400
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=31.94 E-value=39 Score=27.28 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=15.4
Q ss_pred EEEEechhHHHHHHHHh
Q 020630 133 FLFGESMGGAATMLMYF 149 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~ 149 (323)
.+.|-|.||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 58999999999999876
No 401
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=31.87 E-value=72 Score=27.06 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=19.7
Q ss_pred CEEEEEechhHHHHHHHHhhcCCC
Q 020630 131 PAFLFGESMGGAATMLMYFQSEPN 154 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~~ 154 (323)
+-++.|-|.|+.+|..+|...++.
T Consensus 96 p~iI~GtSAGAivaalla~~t~~e 119 (407)
T cd07232 96 PNVISGTSGGSLVAALLCTRTDEE 119 (407)
T ss_pred CCEEEEECHHHHHHHHHHcCCHHH
Confidence 457999999999999999865544
No 402
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=31.37 E-value=1.3e+02 Score=22.93 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=27.9
Q ss_pred CCCEEEEEechhHHHHHHHHhh-cCCCCeeEEEEccCccCCCCC
Q 020630 129 DLPAFLFGESMGGAATMLMYFQ-SEPNTWTGLIFSAPLFVIPEN 171 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a~~-~p~~~v~~~il~~~~~~~~~~ 171 (323)
+.++.++||.||-.-...++.. .....|+.+|-+++.......
T Consensus 55 Gk~iSvmg~GmGipS~sIY~~ELi~~y~Vk~iIRvGt~Gal~~~ 98 (236)
T COG0813 55 GKKISVMGHGMGIPSISIYSRELITDYGVKKIIRVGTCGALSED 98 (236)
T ss_pred CcEEEEEEecCCCccHHHHHHHHHHHhCcceEEEEEccccccCC
Confidence 6689999999996555444432 112228888888877655443
No 403
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=31.15 E-value=2.2e+02 Score=22.57 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=23.4
Q ss_pred EEEEecCCCCCcc-hhhHHHHHHHhcCCcEEEEeccccCc
Q 020630 57 TVYMTHGYGSDTG-WMFQKICISYATWGYAVFAADLLGHG 95 (323)
Q Consensus 57 ~vv~~hG~~~~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G 95 (323)
++|++-|++++.. .....+.+.|.+.++.|+.++--..+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 5788889988753 24456777888788999888855555
No 404
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=31.09 E-value=82 Score=24.39 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=27.0
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.-|+++-|..+. .-...++.|++.|+.|+....|
T Consensus 6 ~kv~lITGASSG---iG~A~A~~l~~~G~~vvl~aRR 39 (246)
T COG4221 6 GKVALITGASSG---IGEATARALAEAGAKVVLAARR 39 (246)
T ss_pred CcEEEEecCcch---HHHHHHHHHHHCCCeEEEEecc
Confidence 357888887754 3467889999999999998866
No 405
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=30.68 E-value=80 Score=20.02 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=17.0
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEE
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAV 86 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~v 86 (323)
+++||+++....+ ...+..|.+.||.+
T Consensus 62 ~~ivv~C~~G~rs-----~~aa~~L~~~G~~~ 88 (100)
T cd01523 62 QEVTVICAKEGSS-----QFVAELLAERGYDV 88 (100)
T ss_pred CeEEEEcCCCCcH-----HHHHHHHHHcCcee
Confidence 6777777643321 23556777889983
No 406
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=30.35 E-value=2e+02 Score=20.39 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=47.7
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
|.|.++-|..++.. ..+.....|.+.| +.+|.+=. +.....+.+.++++.+..+ ..++++.
T Consensus 1 p~V~Ii~gs~SD~~-~~~~a~~~L~~~g---i~~~~~V~-----------saHR~p~~l~~~~~~~~~~----~~~viIa 61 (150)
T PF00731_consen 1 PKVAIIMGSTSDLP-IAEEAAKTLEEFG---IPYEVRVA-----------SAHRTPERLLEFVKEYEAR----GADVIIA 61 (150)
T ss_dssp -EEEEEESSGGGHH-HHHHHHHHHHHTT----EEEEEE-------------TTTSHHHHHHHHHHTTTT----TESEEEE
T ss_pred CeEEEEeCCHHHHH-HHHHHHHHHHHcC---CCEEEEEE-----------eccCCHHHHHHHHHHhccC----CCEEEEE
Confidence 45677777666655 6677777787766 33443311 1112224566666666543 3378888
Q ss_pred EechhHHHHHHHHhhcCCCCeeEE
Q 020630 136 GESMGGAATMLMYFQSEPNTWTGL 159 (323)
Q Consensus 136 G~S~Gg~~a~~~a~~~p~~~v~~~ 159 (323)
+-.+-+.+.-.++..-+.. |-++
T Consensus 62 ~AG~~a~Lpgvva~~t~~P-VIgv 84 (150)
T PF00731_consen 62 VAGMSAALPGVVASLTTLP-VIGV 84 (150)
T ss_dssp EEESS--HHHHHHHHSSS--EEEE
T ss_pred ECCCcccchhhheeccCCC-EEEe
Confidence 8888888888888774433 4444
No 407
>PRK07856 short chain dehydrogenase; Provisional
Probab=30.09 E-value=2.1e+02 Score=22.02 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=22.0
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+++-|..+. .=..+++.|+++|++|+..+..
T Consensus 8 ~~lItGas~g---IG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 8 VVLVTGGTRG---IGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred EEEEeCCCch---HHHHHHHHHHHCCCEEEEEeCC
Confidence 3455555433 3356788888899999998864
No 408
>PRK03482 phosphoglycerate mutase; Provisional
Probab=30.08 E-value=2.4e+02 Score=21.20 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=25.1
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHH
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLM 147 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~ 147 (323)
++.++.+-+..+++.+..... ...+.+|+|+ +.+...+
T Consensus 121 s~~~~~~Rv~~~l~~~~~~~~--~~~vliVsHg--~~i~~l~ 158 (215)
T PRK03482 121 SMQELSDRMHAALESCLELPQ--GSRPLLVSHG--IALGCLV 158 (215)
T ss_pred cHHHHHHHHHHHHHHHHHhCC--CCeEEEEeCc--HHHHHHH
Confidence 678888888888887754432 3468899994 5444433
No 409
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=30.07 E-value=2.8e+02 Score=23.83 Aligned_cols=75 Identities=8% Similarity=-0.018 Sum_probs=42.8
Q ss_pred eEEEEecCCCCC--cchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhC-CCCCCCE
Q 020630 56 ATVYMTHGYGSD--TGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSE-PYRDLPA 132 (323)
Q Consensus 56 ~~vv~~hG~~~~--~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~-~~~~~~~ 132 (323)
|-+|++-..+.+ .......+++.+.+.|..|+.++-+|+..+.. ..+...+.++++++.... ......|
T Consensus 87 p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~~--------~G~~~a~~al~~~~~~~~~~~~~~~V 158 (427)
T cd01971 87 ADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNY--------AGHEIVLKAIIDQYVGQSEEKEPGLV 158 (427)
T ss_pred CCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCcCcccc--------cHHHHHHHHHHHHhccCCCCCCCCeE
Confidence 445555544432 22256677777755688999999999876531 222233445555443321 1124578
Q ss_pred EEEEec
Q 020630 133 FLFGES 138 (323)
Q Consensus 133 ~l~G~S 138 (323)
.|+|.+
T Consensus 159 NiiG~~ 164 (427)
T cd01971 159 NLWGPV 164 (427)
T ss_pred EEEecc
Confidence 899964
No 410
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=30.03 E-value=1.5e+02 Score=21.52 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=19.5
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
|++-|.|.+.. .-..+...|...|..+..+.
T Consensus 36 I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~~ 66 (179)
T cd05005 36 IFVYGAGRSGL-VAKAFAMRLMHLGLNVYVVG 66 (179)
T ss_pred EEEEecChhHH-HHHHHHHHHHhCCCeEEEeC
Confidence 56667775543 44556666766677777764
No 411
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=29.96 E-value=1e+02 Score=22.51 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=22.1
Q ss_pred EEecCCCCC-cchhhHHHHHHHhcCCcEEEEeccc
Q 020630 59 YMTHGYGSD-TGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 59 v~~hG~~~~-~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+..+-||. ....-..++..|+++|++|+.+|.=
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred EEEcCCCCccHHHHHHHHHhccccccccccccccC
Confidence 344444443 3324456888999999999999983
No 412
>PRK10867 signal recognition particle protein; Provisional
Probab=29.92 E-value=3.7e+02 Score=23.26 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=38.4
Q ss_pred HhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCC-CCee
Q 020630 79 YATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEP-NTWT 157 (323)
Q Consensus 79 l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-~~v~ 157 (323)
....+|.++.+|-+|.... -+...+.+..+.+.+. +..+++|.-++-|.-+...|..+.+ ..+.
T Consensus 179 a~~~~~DvVIIDTaGrl~~---------d~~lm~eL~~i~~~v~------p~evllVlda~~gq~av~~a~~F~~~~~i~ 243 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHI---------DEELMDELKAIKAAVN------PDEILLVVDAMTGQDAVNTAKAFNEALGLT 243 (433)
T ss_pred HHhcCCCEEEEeCCCCccc---------CHHHHHHHHHHHHhhC------CCeEEEEEecccHHHHHHHHHHHHhhCCCC
Confidence 3445799999999886432 1233344444444432 2256666666666666666655332 2267
Q ss_pred EEEE
Q 020630 158 GLIF 161 (323)
Q Consensus 158 ~~il 161 (323)
++|+
T Consensus 244 giIl 247 (433)
T PRK10867 244 GVIL 247 (433)
T ss_pred EEEE
Confidence 7777
No 413
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=29.88 E-value=88 Score=25.24 Aligned_cols=34 Identities=3% Similarity=-0.050 Sum_probs=26.3
Q ss_pred HhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhh
Q 020630 111 AASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 111 ~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 150 (323)
.+.+..++++++.. ..-++|.|+|+.+++.+..-
T Consensus 121 W~El~~i~~w~~~~------~~s~LgICwGaQa~a~algG 154 (302)
T PRK05368 121 WDELKEILDWAKTH------VTSTLFICWAAQAALYHLYG 154 (302)
T ss_pred HHHHHHHHHHHHHc------CCCEEEEcHHHHHHHHHcCC
Confidence 44578888888754 46799999999999877654
No 414
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=29.81 E-value=2e+02 Score=20.16 Aligned_cols=72 Identities=10% Similarity=-0.024 Sum_probs=41.5
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.++|.++||.|+-+ |. .| .++.+++..+...+..=.. ..-+.+.|...|-.++ |.+.
T Consensus 15 K~~l~~~L~~~g~eV~D~---G~-~~-------~dypd~a~~va~~V~~~e~-----~~GIliCGtGiG~sia---ANKv 75 (141)
T PRK12613 15 KELIKSFLQEEGYDIIDV---TD-IN-------SDFIDNTLAVAKAVNEAEG-----RLGIMVDAYGAGPFMV---ATKL 75 (141)
T ss_pred HHHHHHHHHHCCCEEEEc---CC-CC-------CChHHHHHHHHHHHHcCCC-----ceEEEEcCCCHhHhhh---hhcC
Confidence 356788898999988543 22 11 2566666666555532111 2235566666665544 5566
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
+. |++.+..++
T Consensus 76 ~G--IRaA~~~d~ 86 (141)
T PRK12613 76 KG--MVAAEVSDE 86 (141)
T ss_pred CC--eEEEEECCH
Confidence 66 666666554
No 415
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=29.80 E-value=70 Score=24.98 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=44.2
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCc-------EEEEeccccCcCCCCCCCCC--------CChHHHHhhHHHHHHHHH
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGY-------AVFAADLLGHGRSDGIRCYL--------GDMEKVAASSLSFFKHVR 122 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~-------~vi~~d~~G~G~s~~~~~~~--------~~~~~~~~d~~~~i~~l~ 122 (323)
-|++.|.|...--.-+.+...+.+.|. +++.+|..|-=..+...... ........++.++++.++
T Consensus 27 riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~k 106 (254)
T cd00762 27 KVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAK 106 (254)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhC
Confidence 345666664432133444454443232 78999998843222211000 000111236677776665
Q ss_pred hhCCCCCCCEEEEEech-hHHHHHHHHh
Q 020630 123 HSEPYRDLPAFLFGESM-GGAATMLMYF 149 (323)
Q Consensus 123 ~~~~~~~~~~~l~G~S~-Gg~~a~~~a~ 149 (323)
+-+++|-|- ||.+.-....
T Consensus 107 --------ptvlIG~S~~~g~ft~evv~ 126 (254)
T cd00762 107 --------PDFLIGVSRVGGAFTPEVIR 126 (254)
T ss_pred --------CCEEEEeCCCCCCCCHHHHH
Confidence 568999998 8876655443
No 416
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=29.80 E-value=46 Score=26.31 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
-|.|+|.-|.++ ..+.|+..||.|+..|+-
T Consensus 252 vPmi~fakG~g~--------~Le~l~~tG~DVvgLDWT 281 (359)
T KOG2872|consen 252 VPMILFAKGSGG--------ALEELAQTGYDVVGLDWT 281 (359)
T ss_pred CceEEEEcCcch--------HHHHHHhcCCcEEeeccc
Confidence 588999888663 235677889999999974
No 417
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=29.64 E-value=1.5e+02 Score=19.36 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=29.4
Q ss_pred chhHHHHHHHhcCCCCcEEEec-CCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 264 PTSSKLLYEKASSADKSIKIYD-GMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
+..+..+.+.+...++++.+.+ +.|++..+-..++..+++...+.+|+..
T Consensus 10 ~r~AqaF~DYl~sqgI~~~i~~~~~~~~~lwl~de~~~~~a~~el~~Fl~n 60 (101)
T PF12122_consen 10 PRAAQAFIDYLASQGIELQIEPEGQGQFALWLHDEEHLEQAEQELEEFLQN 60 (101)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSSE--EEEES-GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCCceEEEEeCHHHHHHHHHHHHHHHHC
Confidence 4556677777765667777774 4564444433456677788888888864
No 418
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=29.47 E-value=56 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=19.0
Q ss_pred CEEEEEechhHHHHHHHHhhcCC
Q 020630 131 PAFLFGESMGGAATMLMYFQSEP 153 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~ 153 (323)
+-++.|-|+|+.+|..+|...++
T Consensus 112 p~~i~GtS~Gaivaa~~a~~~~~ 134 (391)
T cd07229 112 PRIITGTATGALIAALVGVHTDE 134 (391)
T ss_pred CceEEEecHHHHHHHHHHcCCHH
Confidence 45799999999999999985443
No 419
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=29.35 E-value=32 Score=25.03 Aligned_cols=36 Identities=3% Similarity=0.015 Sum_probs=28.2
Q ss_pred HHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 110 VAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
+.+.+..++++.+.. -.-.+|-|||+++|+.++..-
T Consensus 83 Yw~El~~i~dwa~~~------v~stl~iCWgaqaal~~~yGi 118 (175)
T cd03131 83 YWEELTEILDWAKTH------VTSTLFSCWAAMAALYYFYGI 118 (175)
T ss_pred hHHHHHHHHHHHHHh------CcchHHHHHHHHHHHHHHcCc
Confidence 445688888888855 356889999999999888653
No 420
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=29.35 E-value=2e+02 Score=21.13 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=31.9
Q ss_pred ceEEEEecCCCC---CcchhhHHHHHHHhcCCcEEEEeccccC---cCCCCCCCCCCChHHHHhhHHHHH
Q 020630 55 KATVYMTHGYGS---DTGWMFQKICISYATWGYAVFAADLLGH---GRSDGIRCYLGDMEKVAASSLSFF 118 (323)
Q Consensus 55 ~~~vv~~hG~~~---~~~~~~~~~~~~l~~~g~~vi~~d~~G~---G~s~~~~~~~~~~~~~~~d~~~~i 118 (323)
+.+||+++-... .+. ....-...|.+.|+.|+-+. +|+ |+.... ...+++++++.+...+
T Consensus 113 ~~pvvi~Pamn~~m~~~p-~~~~Nl~~L~~~G~~vi~p~-~g~la~~~~g~g--~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENP-ATQRNLKTLKEDGVQEIEPK-EGLLACGDEGYG--ALADIETILETIENTL 178 (182)
T ss_pred CCCEEEEECCCHHHhcCH-HHHHHHHHHHHCCCEEECCC-CCccccCCccCC--CCCCHHHHHHHHHHHh
Confidence 445666664321 112 34555667888898888776 444 333211 1126666665555543
No 421
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=29.33 E-value=2.1e+02 Score=20.36 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=30.8
Q ss_pred HHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCC-EEEEEechhHHHHHHH
Q 020630 75 ICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLP-AFLFGESMGGAATMLM 147 (323)
Q Consensus 75 ~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~-~~l~G~S~Gg~~a~~~ 147 (323)
+...+.+ |-.|++.|.+|--. +-+++++.+ +.+... +.. .+++|-|.|=.-++..
T Consensus 60 il~~i~~-~~~vi~Ld~~Gk~~---------sSe~fA~~l----~~~~~~----G~~i~f~IGG~~Gl~~~~~~ 115 (155)
T COG1576 60 ILAAIPK-GSYVVLLDIRGKAL---------SSEEFADFL----ERLRDD----GRDISFLIGGADGLSEAVKA 115 (155)
T ss_pred HHHhcCC-CCeEEEEecCCCcC---------ChHHHHHHH----HHHHhc----CCeEEEEEeCcccCCHHHHH
Confidence 3344433 67899999987433 344444443 333332 213 4588988885554443
No 422
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.28 E-value=3.3e+02 Score=24.17 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=44.3
Q ss_pred ceEEEEecCCCCCc--chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCC-----C
Q 020630 55 KATVYMTHGYGSDT--GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEP-----Y 127 (323)
Q Consensus 55 ~~~vv~~hG~~~~~--~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~-----~ 127 (323)
+|-+|++-+.+.+. ......+++.+...|..|+.++.+|+..+. ......-+.++++.+..... .
T Consensus 85 ~P~~I~V~sTC~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~--------~~g~~~al~~lv~~~~~~~~~~~~~~ 156 (511)
T TIGR01278 85 KPDLIVVTPSCTSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKE--------NQAADRTLTQLVRRFAKEQPKPGRTT 156 (511)
T ss_pred CCCEEEEeCCChHHHhccCHHHHHHHhccCCCcEEEecCCCcccch--------hHHHHHHHHHHHHHHHhccccccccC
Confidence 45566666655331 225566777776557999999999987653 12222334444443322100 1
Q ss_pred CCCCEEEEEechh
Q 020630 128 RDLPAFLFGESMG 140 (323)
Q Consensus 128 ~~~~~~l~G~S~G 140 (323)
....+.|+|.+..
T Consensus 157 ~~~~VNIiG~~~l 169 (511)
T TIGR01278 157 EKPSVNLLGPASL 169 (511)
T ss_pred CCCcEEEEeCCCC
Confidence 2446999998753
No 423
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.27 E-value=95 Score=25.03 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=28.6
Q ss_pred HhhHHHHHHHHHhhCCCCCCCEEEEEec--hhHHHHHHHHhh
Q 020630 111 AASSLSFFKHVRHSEPYRDLPAFLFGES--MGGAATMLMYFQ 150 (323)
Q Consensus 111 ~~d~~~~i~~l~~~~~~~~~~~~l~G~S--~Gg~~a~~~a~~ 150 (323)
...+.+++++.+.+. .+.++.++|.| ||--++..+...
T Consensus 143 p~aii~lL~~~~i~l--~Gk~V~vIG~s~ivG~PmA~~L~~~ 182 (301)
T PRK14194 143 PSGCLRLLEDTCGDL--TGKHAVVIGRSNIVGKPMAALLLQA 182 (301)
T ss_pred HHHHHHHHHHhCCCC--CCCEEEEECCCCccHHHHHHHHHHC
Confidence 355677777765543 37799999997 899999988765
No 424
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=29.11 E-value=51 Score=26.33 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.7
Q ss_pred EEEEechhHHHHHHHHhhc
Q 020630 133 FLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~~ 151 (323)
.++|-|.||.+|+.++...
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 6899999999999998753
No 425
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=28.98 E-value=51 Score=28.19 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.6
Q ss_pred EecCCCCCCceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccC
Q 020630 46 SFLPLDQKVKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGH 94 (323)
Q Consensus 46 ~~~~~~~~~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~ 94 (323)
.++....+++-+||-..+.+... .+..+.+.|.++|+.++..|.+--
T Consensus 178 ~~~~~~~~P~IAIvDf~~~~~~~--Ef~~f~~~f~~~G~~~vI~d~~~L 224 (445)
T PF14403_consen 178 TFGGRVEKPNIAIVDFLEYPTLS--EFEVFQRLFEEHGYDCVICDPRDL 224 (445)
T ss_pred HhcCcCCCCcEEEEecccCCccc--hHHHHHHHHHHcCCceEecChHHc
Confidence 34444335566777778866543 577889999999999999987643
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.94 E-value=1.2e+02 Score=18.55 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.7
Q ss_pred hhHHHHHHHhcCCcEEEEec
Q 020630 71 MFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d 90 (323)
.-..++..|++.|++|+.+|
T Consensus 15 ~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 15 LAANLAAALAKRGKRVLLID 34 (99)
T ss_pred HHHHHHHHHHHCCCeEEEEC
Confidence 45678888888899999998
No 427
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=28.85 E-value=1.6e+02 Score=19.08 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=19.9
Q ss_pred CceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 54 VKATVYMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
.+++||++.+.... .-...+..|...||.|..++
T Consensus 64 ~~~vvvyc~~g~~~---~s~~~a~~l~~~G~~v~~l~ 97 (110)
T cd01521 64 EKLFVVYCDGPGCN---GATKAALKLAELGFPVKEMI 97 (110)
T ss_pred CCeEEEEECCCCCc---hHHHHHHHHHHcCCeEEEec
Confidence 46788887654321 12334556777799865543
No 428
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=28.68 E-value=2.8e+02 Score=22.76 Aligned_cols=35 Identities=17% Similarity=0.014 Sum_probs=24.6
Q ss_pred CCCEEEEEechh--HHHHHHHHhhcCCCCeeEEEEccC
Q 020630 129 DLPAFLFGESMG--GAATMLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 129 ~~~~~l~G~S~G--g~~a~~~a~~~p~~~v~~~il~~~ 164 (323)
+.+++|+|-|-= =.+=..++..+|++ |.++.+=+-
T Consensus 277 ~~kfvLVGDsGE~DpeIYae~v~~fP~R-Il~I~IRdv 313 (373)
T COG4850 277 DRKFVLVGDSGEHDPEIYAEMVRCFPNR-ILGIYIRDV 313 (373)
T ss_pred CceEEEecCCCCcCHHHHHHHHHhCccc-eeeEeeeec
Confidence 669999999831 13334556778999 988877443
No 429
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=28.68 E-value=2.2e+02 Score=20.19 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=38.3
Q ss_pred hHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhc
Q 020630 72 FQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQS 151 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 151 (323)
-..+.++|.++||.|+ |+ |. .+.... .++.+++..+...+..=.. ..-+.+.|...|-.++ |.+.
T Consensus 15 K~~l~~~L~~~g~eV~--D~-G~--~~~~~~--~dYpd~a~~va~~V~~~~~-----~~GIliCGtGiG~sia---ANK~ 79 (148)
T TIGR02133 15 KEALWLDLAAHEPEVC--DV-GV--YDADDD--DDYPCFCIAAAEAVARDAA-----DLGIVIGGSGNGEAIA---ANKV 79 (148)
T ss_pred HHHHHHHHHHCCCEEE--EC-CC--CCCCCC--CCchHHHHHHHHHHhcCCC-----ceEEEEcCCChhheee---eccc
Confidence 3557788888999885 42 21 111111 1456666665555532111 1224455555554333 5565
Q ss_pred CCCCeeEEEEccC
Q 020630 152 EPNTWTGLIFSAP 164 (323)
Q Consensus 152 p~~~v~~~il~~~ 164 (323)
|. |++.+..++
T Consensus 80 ~G--iRAA~~~d~ 90 (148)
T TIGR02133 80 KG--ARAALAWDT 90 (148)
T ss_pred CC--eEEEEECCH
Confidence 65 666666553
No 430
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=28.59 E-value=1.9e+02 Score=25.93 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHhhHHHHHHHHHhhCCCCCCCEEEEEe------chhHHHHHHHHhhcCCCCeeEEEEccC
Q 020630 108 EKVAASSLSFFKHVRHSEPYRDLPAFLFGE------SMGGAATMLMYFQSEPNTWTGLIFSAP 164 (323)
Q Consensus 108 ~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~------S~Gg~~a~~~a~~~p~~~v~~~il~~~ 164 (323)
..-++.+..+++.+-.. ..+|+++|| |.|+.+++..-+....+ .+-+.+.|
T Consensus 320 RvRaRvis~al~d~i~e----~d~VfImGHk~pDmDalGsAig~~~~A~~~~~--~a~~v~dp 376 (655)
T COG3887 320 RVRARVISTALSDIIKE----SDNVFIMGHKFPDMDALGSAIGMQKFASMNNK--EAFAVLDP 376 (655)
T ss_pred HHHHHHHHHHHHHHHhh----cCcEEEEccCCCChHHHHHHHHHHHHHHhccc--ccEEEECc
Confidence 33456666666666555 459999999 68999998766654432 34555554
No 431
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=28.59 E-value=2.2e+02 Score=24.00 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=39.6
Q ss_pred hhHHHHHHHhcC-CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHh-hCCCCCCCEEEEEec-hh
Q 020630 71 MFQKICISYATW-GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRH-SEPYRDLPAFLFGES-MG 140 (323)
Q Consensus 71 ~~~~~~~~l~~~-g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~-~~~~~~~~~~l~G~S-~G 140 (323)
.+..+++.+.++ |..|+.++.+|+..+ ....+..-+.++++.+.. ....+...+.|+|.+ ++
T Consensus 92 D~~~v~~~~~~~~~~~vi~v~~~gf~~~--------~~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~ 156 (398)
T PF00148_consen 92 DIEAVARELQEEYGIPVIPVHTPGFSGS--------YSQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLG 156 (398)
T ss_dssp THHHHHHHHHHHHSSEEEEEE--TTSSS--------HHHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBT
T ss_pred CHHHHHHHhhcccCCcEEEEECCCccCC--------ccchHHHHHHHHHhhcccccccCCCCceEEecCcCCC
Confidence 567778888754 569999999999433 344445566667777732 222335579999998 45
No 432
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=28.35 E-value=1e+02 Score=24.88 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=19.1
Q ss_pred CEEEEEechhHHHHHHHHhhcCCC
Q 020630 131 PAFLFGESMGGAATMLMYFQSEPN 154 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~~ 154 (323)
+-++.|.|.|+.+|..++....+.
T Consensus 98 ~~~i~GtSaGAi~aa~~~~~~~~E 121 (298)
T cd07206 98 PRVISGSSAGAIVAALLGTHTDEE 121 (298)
T ss_pred CCEEEEEcHHHHHHHHHHcCCcHH
Confidence 447999999999999998764443
No 433
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=28.28 E-value=1e+02 Score=27.47 Aligned_cols=82 Identities=22% Similarity=0.203 Sum_probs=42.7
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhc-CCc-------EEEEeccccCcCCCCCCCCCCChHHHH------hhHHHHHHHHH
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYAT-WGY-------AVFAADLLGHGRSDGIRCYLGDMEKVA------ASSLSFFKHVR 122 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~-~g~-------~vi~~d~~G~G~s~~~~~~~~~~~~~~------~d~~~~i~~l~ 122 (323)
.-|++.|.|...--.-+.+...+.. .|. +++.+|..|-=..+........-..++ .++.++++.++
T Consensus 322 ~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 401 (581)
T PLN03129 322 QRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIK 401 (581)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccC
Confidence 4455667664432144455555544 366 899999988432222110100111112 34555555544
Q ss_pred hhCCCCCCCEEEEEech-hHHHHHH
Q 020630 123 HSEPYRDLPAFLFGESM-GGAATML 146 (323)
Q Consensus 123 ~~~~~~~~~~~l~G~S~-Gg~~a~~ 146 (323)
+-+++|-|- ||.+.-.
T Consensus 402 --------ptvLIG~S~~~g~Ft~e 418 (581)
T PLN03129 402 --------PTVLIGLSGVGGTFTKE 418 (581)
T ss_pred --------CCEEEEecCCCCCCCHH
Confidence 568999995 6654433
No 434
>PRK08177 short chain dehydrogenase; Provisional
Probab=28.22 E-value=96 Score=23.37 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=22.2
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEecccc
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAADLLG 93 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G 93 (323)
+++.|..+. .-..+++.|+++|++|++.+...
T Consensus 4 vlItG~sg~---iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 4 ALIIGASRG---LGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEeCCCch---HHHHHHHHHHhCCCEEEEEeCCC
Confidence 555565433 23457888888999999998653
No 435
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=28.14 E-value=55 Score=25.56 Aligned_cols=83 Identities=22% Similarity=0.150 Sum_probs=45.3
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCc-------EEEEeccccCcCCCCCCCCCCChHHH---------HhhHHHHHHHH
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGY-------AVFAADLLGHGRSDGIRCYLGDMEKV---------AASSLSFFKHV 121 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~-------~vi~~d~~G~G~s~~~~~~~~~~~~~---------~~d~~~~i~~l 121 (323)
-|++.|.|...--.-+.+...+..+|. +++.+|..|.=..+...-. ..-..+ ..++.++++.+
T Consensus 27 riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~-~~~~~~a~~~~~~~~~~~L~eav~~~ 105 (255)
T PF03949_consen 27 RIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLN-PHKKPFARKTNPEKDWGSLLEAVKGA 105 (255)
T ss_dssp EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHS-HHHHHHHBSSSTTT--SSHHHHHHCH
T ss_pred EEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCC-hhhhhhhccCcccccccCHHHHHHhc
Confidence 355566664432245566667666676 6999998874322221100 000011 13677777766
Q ss_pred HhhCCCCCCCEEEEEec-hhHHHHHHHHh
Q 020630 122 RHSEPYRDLPAFLFGES-MGGAATMLMYF 149 (323)
Q Consensus 122 ~~~~~~~~~~~~l~G~S-~Gg~~a~~~a~ 149 (323)
+ +-+|+|-| .||.+.-.+..
T Consensus 106 k--------PtvLIG~S~~~g~ft~evv~ 126 (255)
T PF03949_consen 106 K--------PTVLIGLSGQGGAFTEEVVR 126 (255)
T ss_dssp ----------SEEEECSSSTTSS-HHHHH
T ss_pred C--------CCEEEEecCCCCcCCHHHHH
Confidence 5 56999999 88877655544
No 436
>PRK09072 short chain dehydrogenase; Provisional
Probab=28.12 E-value=91 Score=24.23 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=22.8
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+++.|..+. .-..+++.|.++|+.|++++..
T Consensus 7 ~vlItG~s~~---iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 7 RVLLTGASGG---IGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred EEEEECCCch---HHHHHHHHHHHCCCEEEEEECC
Confidence 4666665543 3456788888899999999853
No 437
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.11 E-value=90 Score=20.91 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=19.4
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
|++-|.|.+.. ....+...|...|..+...+
T Consensus 3 I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~~~ 33 (128)
T cd05014 3 VVVTGVGKSGH-IARKIAATLSSTGTPAFFLH 33 (128)
T ss_pred EEEEeCcHhHH-HHHHHHHHhhcCCCceEEcc
Confidence 56667775543 44556666666677777663
No 438
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=27.67 E-value=2.1e+02 Score=22.36 Aligned_cols=44 Identities=5% Similarity=-0.058 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCcEEEecCCCccccccCCchhHHHHHHHHHHHHH
Q 020630 267 SKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWID 312 (323)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~ 312 (323)
.+.+.+.+ |+.+++.+-+..|++.-+++.+........+.+||.
T Consensus 14 ~~~l~~~~--p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~ 57 (251)
T TIGR00067 14 LKEIRKQL--PKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLK 57 (251)
T ss_pred HHHHHHHC--CCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44556666 667777777778888866665555555555555655
No 439
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=27.53 E-value=62 Score=22.03 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=21.4
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
+|...|.+++-. -+-.+++.|.++|++|...-.+
T Consensus 2 li~~~Gt~Ghv~-P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 2 LIATGGTRGHVY-PFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEESSHHHHH-HHHHHHHHHHHTT-EEEEEETG
T ss_pred EEEEcCChhHHH-HHHHHHHHHhccCCeEEEeecc
Confidence 344455555544 5667889999999998755433
No 440
>PRK05665 amidotransferase; Provisional
Probab=27.38 E-value=1.6e+02 Score=22.79 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=25.9
Q ss_pred ChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHHHHHHH
Q 020630 106 DMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAATMLMY 148 (323)
Q Consensus 106 ~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a 148 (323)
+-..+...+.++|+.+... .+-++|.|+|..+...++
T Consensus 72 ~~~pwi~~l~~~i~~~~~~------~~PilGIC~GhQlla~Al 108 (240)
T PRK05665 72 GTDPWIQTLKTYLLKLYER------GDKLLGVCFGHQLLALLL 108 (240)
T ss_pred ccchHHHHHHHHHHHHHhc------CCCEEEEeHHHHHHHHHh
Confidence 3445667777777776543 345899999998876655
No 441
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.37 E-value=1.2e+02 Score=24.98 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=25.7
Q ss_pred ceEEEEecC-CCCC-cch---hhHHHHHHHhcCCcEEEEe
Q 020630 55 KATVYMTHG-YGSD-TGW---MFQKICISYATWGYAVFAA 89 (323)
Q Consensus 55 ~~~vv~~hG-~~~~-~~~---~~~~~~~~l~~~g~~vi~~ 89 (323)
+|.|++.|| ..+. ..| .|..+++.|.++|+.|+.+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~ 214 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLF 214 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 588999999 4322 233 6788899999998888765
No 442
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=27.33 E-value=1.2e+02 Score=21.47 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.9
Q ss_pred CEEEEEechhHHHHHHHH
Q 020630 131 PAFLFGESMGGAATMLMY 148 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a 148 (323)
--.+.|.|.|+.++..++
T Consensus 29 ~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 29 VTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCEEEEEcHHHHHHHHHh
Confidence 457899999999999988
No 443
>PRK12828 short chain dehydrogenase; Provisional
Probab=27.31 E-value=1e+02 Score=23.34 Aligned_cols=31 Identities=16% Similarity=-0.092 Sum_probs=22.2
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEecc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADL 91 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~ 91 (323)
.+++.|..+.- =..+++.|.++|++|+.++.
T Consensus 9 ~vlItGatg~i---G~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 9 VVAITGGFGGL---GRATAAWLAARGARVALIGR 39 (239)
T ss_pred EEEEECCCCcH---hHHHHHHHHHCCCeEEEEeC
Confidence 36667765442 34677888888999999985
No 444
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=27.16 E-value=1.5e+02 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=21.2
Q ss_pred ecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 61 THGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 61 ~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
+=|+..+..-.-..+.++|.++||+|+-++..
T Consensus 21 vVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~ 52 (140)
T COG1832 21 VVGASDKPDRPSYRVAKYLQQKGYRVIPVNPK 52 (140)
T ss_pred EEecCCCCCccHHHHHHHHHHCCCEEEeeCcc
Confidence 33554443313345788999999999988853
No 445
>PRK07069 short chain dehydrogenase; Validated
Probab=27.08 E-value=2e+02 Score=21.92 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=21.8
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
+++.|..+. .-..+++.|.++|++|+..+..
T Consensus 2 ilVtG~~~~---iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGG---LGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCCh---HHHHHHHHHHHCCCEEEEEeCC
Confidence 456665543 3356788888899999988743
No 446
>PRK09936 hypothetical protein; Provisional
Probab=26.87 E-value=1.8e+02 Score=23.31 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=30.3
Q ss_pred EecCCCCCc---chhhHHHHHHHhcCCcEEEEeccccCcCCC
Q 020630 60 MTHGYGSDT---GWMFQKICISYATWGYAVFAADLLGHGRSD 98 (323)
Q Consensus 60 ~~hG~~~~~---~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~ 98 (323)
|+..+..+. ...|+.+.+.+...|++.+.+-+-++|+++
T Consensus 25 F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~ 66 (296)
T PRK09936 25 FYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDAD 66 (296)
T ss_pred eeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCC
Confidence 455554442 237899999999999999999999999883
No 447
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.53 E-value=82 Score=18.82 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=17.0
Q ss_pred ceEEEEecCCC-CCcchhhHHHHHHHh-cCCcEEEEe
Q 020630 55 KATVYMTHGYG-SDTGWMFQKICISYA-TWGYAVFAA 89 (323)
Q Consensus 55 ~~~vv~~hG~~-~~~~~~~~~~~~~l~-~~g~~vi~~ 89 (323)
.|.++++||.. ... +.++...+ ++|..++.+
T Consensus 31 ~~~~~lvhGga~~Ga----D~iA~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGA----DRIAARWARERGVPVIRF 63 (71)
T ss_pred CCCEEEEECCCCCCH----HHHHHHHHHHCCCeeEEe
Confidence 46788899876 222 23444443 346665543
No 448
>PRK13938 phosphoheptose isomerase; Provisional
Probab=26.52 E-value=2.2e+02 Score=21.22 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.9
Q ss_pred CCCEEEEEechhHHHHHHHHhhcC
Q 020630 129 DLPAFLFGESMGGAATMLMYFQSE 152 (323)
Q Consensus 129 ~~~~~l~G~S~Gg~~a~~~a~~~p 152 (323)
+.+++++|.+-.|.+|..++.+..
T Consensus 45 g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 45 GARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHcC
Confidence 559999999999999999998753
No 449
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=26.50 E-value=3.1e+02 Score=21.33 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=22.8
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
++++|-|.++. .=..+++.|.++|+.|+..+.+
T Consensus 2 ~~~lITGas~g---IG~~~a~~l~~~G~~V~~~~~~ 34 (267)
T TIGR02685 2 PAAVVTGAAKR---IGSSIAVALHQEGYRVVLHYHR 34 (267)
T ss_pred CEEEEeCCCCc---HHHHHHHHHHhCCCeEEEEcCC
Confidence 35666666543 2345888898999999987543
No 450
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=26.42 E-value=3.3e+02 Score=21.61 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=36.3
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhh
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHS 124 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~ 124 (323)
+.-++++ |.+|+..-....++..+. ++.++-++.. ..++..++-+|+..++...+.+
T Consensus 31 ~Gh~LLv-G~~GsGr~sl~rLaa~i~--~~~~~~i~~~----------~~y~~~~f~~dLk~~~~~ag~~ 87 (268)
T PF12780_consen 31 RGHALLV-GVGGSGRQSLARLAAFIC--GYEVFQIEIT----------KGYSIKDFKEDLKKALQKAGIK 87 (268)
T ss_dssp TEEEEEE-CTTTSCHHHHHHHHHHHT--TEEEE-TTTS----------TTTHHHHHHHHHHHHHHHHHCS
T ss_pred CCCeEEe-cCCCccHHHHHHHHHHHh--ccceEEEEee----------CCcCHHHHHHHHHHHHHHHhcc
Confidence 3444444 444444325556666554 5888887742 1247889999999999888876
No 451
>COG5023 Tubulin [Cytoskeleton]
Probab=26.27 E-value=3.1e+02 Score=22.97 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=38.5
Q ss_pred hHHHHhhHHHHHHHHHhhCCCCCCCEEEEEechhHH--------HHHHHHhhcCCCCeeEEEEccCccCCCC
Q 020630 107 MEKVAASSLSFFKHVRHSEPYRDLPAFLFGESMGGA--------ATMLMYFQSEPNTWTGLIFSAPLFVIPE 170 (323)
Q Consensus 107 ~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~--------~a~~~a~~~p~~~v~~~il~~~~~~~~~ 170 (323)
-.++.+|+.+.|+....... ..+=+++=||.||. +.-++..++|++ +..-..+-|.....+
T Consensus 109 G~e~~ddvmd~IrreAd~cD--~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK-~~~tfSV~P~p~~Sd 177 (443)
T COG5023 109 GKEIIDDVMDMIRREADGCD--GLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKK-IKLTFSVFPAPKVSD 177 (443)
T ss_pred hHHHHHHHHHHHHHHhhcCc--cccceeeeeeccCcCcccHHHHHHHHHHHhcchh-heeEEEeccCCccCc
Confidence 46677888888887766543 44556777776654 344555668887 666666666544333
No 452
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.27 E-value=3.6e+02 Score=23.16 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=44.4
Q ss_pred ceEEEEecCCCCCc--chhhHHHHHHHh-cCCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhC------
Q 020630 55 KATVYMTHGYGSDT--GWMFQKICISYA-TWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSE------ 125 (323)
Q Consensus 55 ~~~vv~~hG~~~~~--~~~~~~~~~~l~-~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~------ 125 (323)
+|-+|++...+... ......+++.+. +.|..|+.++.+|+..+. .......+.++++.+....
T Consensus 85 ~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~--------~~g~~~al~~l~~~~~~~~~~~~~~ 156 (430)
T cd01981 85 KPDLIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPLDVNHYRVNE--------LQAADETFEQLVRFYAEKARPQGTP 156 (430)
T ss_pred CCCEEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEecCCCccchH--------HHHHHHHHHHHHHHHhccccccccc
Confidence 45567776665332 225566766665 248899999999987652 2223334445555442211
Q ss_pred --CCCCCCEEEEEech
Q 020630 126 --PYRDLPAFLFGESM 139 (323)
Q Consensus 126 --~~~~~~~~l~G~S~ 139 (323)
......+.|+|.+.
T Consensus 157 ~~~~~~~~VNiiG~~~ 172 (430)
T cd01981 157 REKTEKPSVNLIGPSS 172 (430)
T ss_pred cccCCCCcEEEEcCCC
Confidence 11234699999874
No 453
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=26.13 E-value=2.8e+02 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=18.8
Q ss_pred HHhhHHHHHHHHHhhCCCCCCCEEEEEechhHHH
Q 020630 110 VAASSLSFFKHVRHSEPYRDLPAFLFGESMGGAA 143 (323)
Q Consensus 110 ~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~Gg~~ 143 (323)
..+++.+.|+....... ....+++-||+||..
T Consensus 106 ~~~~~~~~ir~~~e~~d--~~~~~~i~~slgGGT 137 (216)
T PF00091_consen 106 ALEEILEQIRKEIEKCD--SLDGFFIVHSLGGGT 137 (216)
T ss_dssp HHHHHHHHHHHHHHTST--TESEEEEEEESSSSH
T ss_pred cccccccccchhhcccc--ccccceeccccccee
Confidence 44455555554443322 447788889988764
No 454
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=26.10 E-value=74 Score=19.63 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=16.0
Q ss_pred hHHHHHHHhcCCcEEEEec
Q 020630 72 FQKICISYATWGYAVFAAD 90 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d 90 (323)
...+.++|.++||.|+-++
T Consensus 10 Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLE 28 (80)
T ss_pred chHHHHHHHHCCCEEEecC
Confidence 4567889999999999887
No 455
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=25.92 E-value=93 Score=25.32 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.1
Q ss_pred CEEEEEechhHHHHHHHHhh
Q 020630 131 PAFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~ 150 (323)
+-++.|-|.|+.+|..++..
T Consensus 97 p~~i~GsSaGAivaa~~~~~ 116 (323)
T cd07231 97 PRVIAGSSVGSIVCAIIATR 116 (323)
T ss_pred CCEEEEECHHHHHHHHHHcC
Confidence 45799999999999988864
No 456
>PRK08339 short chain dehydrogenase; Provisional
Probab=25.92 E-value=1.1e+02 Score=23.85 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=22.1
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEecc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADL 91 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~ 91 (323)
++++.|.++. .=..+++.|+++|++|+..+.
T Consensus 10 ~~lItGas~g---IG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 10 LAFTTASSKG---IGFGVARVLARAGADVILLSR 40 (263)
T ss_pred EEEEeCCCCc---HHHHHHHHHHHCCCEEEEEeC
Confidence 4566665543 335678889999999998874
No 457
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=25.91 E-value=56 Score=26.88 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=15.4
Q ss_pred EEEEEechhHHHHHHHHhh
Q 020630 132 AFLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 132 ~~l~G~S~Gg~~a~~~a~~ 150 (323)
-.++|||+|=+.|+.++..
T Consensus 126 ~~~~GHSlGE~aA~~~AG~ 144 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAGA 144 (343)
T ss_pred CeeeeccHHHHHHHHHhCC
Confidence 3689999999998887753
No 458
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.63 E-value=1e+02 Score=23.73 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=20.6
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEecc
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAADL 91 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~ 91 (323)
+++.|..+. .=..+++.|.++|++|+..+.
T Consensus 13 vlItGa~g~---iG~~ia~~l~~~G~~V~~~~r 42 (255)
T PRK07523 13 ALVTGSSQG---IGYALAEGLAQAGAEVILNGR 42 (255)
T ss_pred EEEECCcch---HHHHHHHHHHHcCCEEEEEeC
Confidence 556665433 334677888889999998764
No 459
>PRK08263 short chain dehydrogenase; Provisional
Probab=25.63 E-value=2.6e+02 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=22.4
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+++.|..+. .-..+++.|.++|+.|+..+..
T Consensus 5 ~vlItGasg~---iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 5 VWFITGASRG---FGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred EEEEeCCCCh---HHHHHHHHHHHCCCEEEEEECC
Confidence 4566665433 3456788888889999988754
No 460
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=25.63 E-value=1.3e+02 Score=23.85 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=28.1
Q ss_pred EEEEecCCCCC-cchhhHHHHHHHhcCCcEEEEeccccCcCCC
Q 020630 57 TVYMTHGYGSD-TGWMFQKICISYATWGYAVFAADLLGHGRSD 98 (323)
Q Consensus 57 ~vv~~hG~~~~-~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~ 98 (323)
+|.++ |=||. ....-..++..|+++|++|+.+|+=-.|...
T Consensus 3 ~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t 44 (279)
T PRK13230 3 KFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCT 44 (279)
T ss_pred EEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccccc
Confidence 45555 64444 3324567888999999999999987665543
No 461
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=25.43 E-value=3e+02 Score=24.24 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=48.4
Q ss_pred CceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCCCCChHHHHhh-HHHHHHHHHhhCCCCCCC
Q 020630 54 VKATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAAS-SLSFFKHVRHSEPYRDLP 131 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d-~~~~i~~l~~~~~~~~~~ 131 (323)
..|+||++-|+.+.. +..-..+...+..+||+|+++--| +-++...+ +-.+...+-. .+.
T Consensus 297 ~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~P-------------t~~E~~~~~lwRf~~~lP~-----~G~ 358 (493)
T TIGR03708 297 KRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAP-------------TDEEKAQHYLWRFWRHIPR-----RGR 358 (493)
T ss_pred CCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCc-------------CHHHHcCcHHHHHHHhCCC-----CCe
Confidence 378999999997653 336678888898999999998766 44444443 3444445443 347
Q ss_pred EEEEEechhHH
Q 020630 132 AFLFGESMGGA 142 (323)
Q Consensus 132 ~~l~G~S~Gg~ 142 (323)
+.++=-|+=+-
T Consensus 359 i~iFdRSwY~~ 369 (493)
T TIGR03708 359 ITIFDRSWYGR 369 (493)
T ss_pred EEEEcCCccCC
Confidence 88887776443
No 462
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=25.40 E-value=2.5e+02 Score=19.92 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=46.9
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCc-EEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGY-AVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFL 134 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~-~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l 134 (323)
.+.+++=| . ... .-..+.+.+...|. +|+.++.+.... ++.+.+++-+.++++... ..+++
T Consensus 34 ~v~av~~G-~-~~~-~~~~l~~~l~~~G~d~v~~~~~~~~~~--------~~~~~~a~~l~~~~~~~~-------~~lVl 95 (164)
T PF01012_consen 34 EVTAVVLG-P-AEE-AAEALRKALAKYGADKVYHIDDPALAE--------YDPEAYADALAELIKEEG-------PDLVL 95 (164)
T ss_dssp EEEEEEEE-T-CCC-HHHHHHHHHHSTTESEEEEEE-GGGTT--------C-HHHHHHHHHHHHHHHT--------SEEE
T ss_pred eEEEEEEe-c-chh-hHHHHhhhhhhcCCcEEEEecCccccc--------cCHHHHHHHHHHHHHhcC-------CCEEE
Confidence 45555555 2 122 22334555665777 688887664322 256777888888887743 26889
Q ss_pred EEec-hhHHHHHHHHhhc
Q 020630 135 FGES-MGGAATMLMYFQS 151 (323)
Q Consensus 135 ~G~S-~Gg~~a~~~a~~~ 151 (323)
+|++ .|.-++-.+|.+.
T Consensus 96 ~~~t~~g~~la~~lA~~L 113 (164)
T PF01012_consen 96 FGSTSFGRDLAPRLAARL 113 (164)
T ss_dssp EESSHHHHHHHHHHHHHH
T ss_pred EcCcCCCCcHHHHHHHHh
Confidence 9887 4666777777763
No 463
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=25.31 E-value=1.5e+02 Score=25.78 Aligned_cols=63 Identities=10% Similarity=0.145 Sum_probs=39.7
Q ss_pred cccEEEEeeCCCcccCchhHHHHHHHhcCCCCcEEEecCCCccccccCCc--------hhHHHHHHHHHHHHHHHH
Q 020630 248 TVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPD--------ENANLVLKDMREWIDERV 315 (323)
Q Consensus 248 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~--------~~~~~~~~~i~~fl~~~~ 315 (323)
...|++.+|..|+...... .. ....++..+.|.|++|+.-+-... .....+.+.+..||....
T Consensus 433 atnVvf~NG~~DPWh~LG~----~~-st~~~~~~~li~gtsHCaDMyp~~~sD~~~L~~aR~~i~~~l~~wl~~~~ 503 (514)
T KOG2182|consen 433 ATNVVFPNGSLDPWHALGL----QN-STDSSVVSILINGTSHCADMYPARDSDSPSLKAARNRIDQNLARWLHQQP 503 (514)
T ss_pred cceEEecCCCCCchhhhcc----cc-CCCCCceEEEecCCccccccCCCCCCccHHHHHHHHHHHHHHHHHhhhcc
Confidence 5689999999998754332 11 223567888999999998642111 234445556666665544
No 464
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=25.26 E-value=1.5e+02 Score=22.73 Aligned_cols=48 Identities=6% Similarity=-0.067 Sum_probs=28.5
Q ss_pred EEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEE
Q 020630 86 VFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFG 136 (323)
Q Consensus 86 vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G 136 (323)
|+.+.+|-+|..-..-...++.. -++.+.++|+.++.+.. ++++++-+
T Consensus 114 vyGfqWrHfgA~Y~~~~~dy~gq-gvdQL~~vI~~ik~NP~--drRIimsA 161 (293)
T KOG0673|consen 114 VYGFQWRHFGARYEDCDSDYTGQ-GVDQLADVINKIKNNPD--DRRIIMSA 161 (293)
T ss_pred ccceeeeecCccccccccccccc-cHHHHHHHHHHHhcCCc--cceeeeec
Confidence 77788887776543322222222 24677888888887643 55565543
No 465
>PRK07053 glutamine amidotransferase; Provisional
Probab=25.20 E-value=3.2e+02 Score=21.08 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=44.2
Q ss_pred ceEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCC-C------------CCCCCCCC--hHHHHhhHHHHHH
Q 020630 55 KATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRS-D------------GIRCYLGD--MEKVAASSLSFFK 119 (323)
Q Consensus 55 ~~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s-~------------~~~~~~~~--~~~~~~d~~~~i~ 119 (323)
++.+|+-|--..+.. .+.+.|.+.|+.+-.+... .+.. . +-+...++ ...+..+..++++
T Consensus 3 ~~ilviqh~~~e~~g----~i~~~L~~~g~~~~v~~~~-~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~ 77 (234)
T PRK07053 3 KTAVAIRHVAFEDLG----SFEQVLGARGYRVRYVDVG-VDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLR 77 (234)
T ss_pred ceEEEEECCCCCCCh----HHHHHHHHCCCeEEEEecC-CCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHH
Confidence 356777787665544 3566666677766554321 1110 0 00001111 1123445556666
Q ss_pred HHHhhCCCCCCCEEEEEechhHHHHHHHH
Q 020630 120 HVRHSEPYRDLPAFLFGESMGGAATMLMY 148 (323)
Q Consensus 120 ~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a 148 (323)
.+... .+-++|.|+|..+...++
T Consensus 78 ~~~~~------~~PvlGIC~G~Qlla~al 100 (234)
T PRK07053 78 QRLAA------GLPTLGICLGAQLIARAL 100 (234)
T ss_pred HHHHC------CCCEEEECccHHHHHHHc
Confidence 55433 346899999999887765
No 466
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=25.12 E-value=1.3e+02 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=21.6
Q ss_pred CceEEEEecCCCCCc-ch---hhHHHHHHHhcCCcEEEEe
Q 020630 54 VKATVYMTHGYGSDT-GW---MFQKICISYATWGYAVFAA 89 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~-~~---~~~~~~~~l~~~g~~vi~~ 89 (323)
.++.|++.+|.+... .| .|..+++.|.+.++.|+.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~ 143 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLL 143 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE-
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEE
Confidence 467888888876532 22 4678899998888777654
No 467
>PRK07326 short chain dehydrogenase; Provisional
Probab=25.11 E-value=1.1e+02 Score=23.15 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=20.9
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEecc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADL 91 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~ 91 (323)
.+++.|.++. .-..+++.|.++|+.|++++.
T Consensus 8 ~ilItGatg~---iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 8 VALITGGSKG---IGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred EEEEECCCCc---HHHHHHHHHHHCCCEEEEeeC
Confidence 4555665443 334577788888999999874
No 468
>PRK15482 transcriptional regulator MurR; Provisional
Probab=25.10 E-value=72 Score=25.36 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=20.2
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
|++.|.|.+.. .-..+...|..-|+.|....
T Consensus 138 I~i~G~G~S~~-~A~~l~~~l~~~g~~~~~~~ 168 (285)
T PRK15482 138 IQITGLGGSAL-VGRDLSFKLMKIGYRVACEA 168 (285)
T ss_pred eEEEEeChhHH-HHHHHHHHHHhCCCeeEEec
Confidence 67888876543 44555666666788877653
No 469
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.09 E-value=1.4e+02 Score=23.54 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=22.8
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEecc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADL 91 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~ 91 (323)
+++|-|.+.+.. .=..+++.|+++|++|+..+.
T Consensus 7 ~~lItGas~~~G-IG~aiA~~la~~G~~Vil~~r 39 (274)
T PRK08415 7 KGLIVGVANNKS-IAYGIAKACFEQGAELAFTYL 39 (274)
T ss_pred EEEEECCCCCCC-HHHHHHHHHHHCCCEEEEEec
Confidence 556666653233 345688889999999998764
No 470
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=25.06 E-value=51 Score=26.63 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=15.1
Q ss_pred EEEEechhHHHHHHHHh
Q 020630 133 FLFGESMGGAATMLMYF 149 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~ 149 (323)
.+.|-|.||.+|+.++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 68999999999998874
No 471
>PRK09135 pteridine reductase; Provisional
Probab=24.99 E-value=1.1e+02 Score=23.31 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=22.9
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+++-|..+. .=..+++.|.++|+.|+.++.+
T Consensus 8 ~vlItGa~g~---iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 8 VALITGGARR---IGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred EEEEeCCCch---HHHHHHHHHHHCCCEEEEEcCC
Confidence 4566665533 3356788888899999999855
No 472
>PRK05876 short chain dehydrogenase; Provisional
Probab=24.93 E-value=1.2e+02 Score=24.00 Aligned_cols=32 Identities=19% Similarity=0.083 Sum_probs=22.7
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.+++.|.++. .-..+++.|+++|++|+..+.+
T Consensus 8 ~vlVTGas~g---IG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 8 GAVITGGASG---IGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred EEEEeCCCch---HHHHHHHHHHHCCCEEEEEeCC
Confidence 4566666543 3356788899999999988754
No 473
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=24.90 E-value=1.2e+02 Score=25.77 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=32.3
Q ss_pred cccEEEEeeCCCcccCchhHHHHHHHhcCCCC--cEEEecCCCccccccCCchhHHHHHHHHHHHHHH
Q 020630 248 TVPFLTVHGTADGVTCPTSSKLLYEKASSADK--SIKIYDGMYHSLIQGEPDENANLVLKDMREWIDE 313 (323)
Q Consensus 248 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gH~~~~~~~~~~~~~~~~~i~~fl~~ 313 (323)
..|++++.|.-|.+-+ +....+.+.+...+. -.+.+||.|+.....- .+..+.+.+.+.+||..
T Consensus 189 p~P~VIv~gGlDs~qe-D~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l-~~D~~~l~~aVLd~L~~ 254 (411)
T PF06500_consen 189 PYPTVIVCGGLDSLQE-DLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPL-TQDSSRLHQAVLDYLAS 254 (411)
T ss_dssp -EEEEEEE--TTS-GG-GGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S--S-CCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcchhHH-HHHHHHHHHHHhCCCEEEEEccCCCcccccCCC-CcCHHHHHHHHHHHHhc
Confidence 6799999999998743 223333332321233 4455678887643211 12235677888898875
No 474
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=24.89 E-value=3.7e+02 Score=22.95 Aligned_cols=80 Identities=10% Similarity=0.044 Sum_probs=45.4
Q ss_pred ceEEEEecCCCCCc--chhhHHHHHHHhc-CCcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCC
Q 020630 55 KATVYMTHGYGSDT--GWMFQKICISYAT-WGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLP 131 (323)
Q Consensus 55 ~~~vv~~hG~~~~~--~~~~~~~~~~l~~-~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~ 131 (323)
+|-+|++...+.+. ......+++.+.+ .|..|+.++-+|+..+- .+.+-.-+.++++.+..........
T Consensus 84 ~P~~I~V~tTC~se~IGDDi~~v~~~~~~~~~~pVi~v~tpgf~g~~--------~~G~~~~~~alv~~~~~~~~~~~~~ 155 (407)
T TIGR01279 84 NPSVIFLLSSCTPEVIKMDLEGLAERLSTNFGVPVLFAPASGLDYTF--------TQGEDTVLAALVPFCPEAPASEQRA 155 (407)
T ss_pred CCCEEEEECCchHHHHHhhHHHHHHHHHHhhCCCEEEeeCCCccccH--------HHHHHHHHHHHHHhhccccCCCCCc
Confidence 57788888876542 2245566666643 48899999999885431 1222233444444443211111246
Q ss_pred EEEEEechhHH
Q 020630 132 AFLFGESMGGA 142 (323)
Q Consensus 132 ~~l~G~S~Gg~ 142 (323)
+.++|.-..+-
T Consensus 156 vniiG~~~~~d 166 (407)
T TIGR01279 156 LVLVGSVNDIV 166 (407)
T ss_pred EEEEeccChhh
Confidence 78888766543
No 475
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=24.80 E-value=2.5e+02 Score=19.59 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=16.9
Q ss_pred hhHHHHHHHhcCCcEEEEecccc
Q 020630 71 MFQKICISYATWGYAVFAADLLG 93 (323)
Q Consensus 71 ~~~~~~~~l~~~g~~vi~~d~~G 93 (323)
....+++.|.++|+.|..+-...
T Consensus 17 ~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 17 VVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHHHHHHTT-EEEEEESS-
T ss_pred HHHHHHHHHHHCCCEEEEEEcCC
Confidence 56778999999999998885443
No 476
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=24.78 E-value=2.9e+02 Score=20.37 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=18.6
Q ss_pred EEEeccccCcCCCCCCCC-C-CChHHHHhhHHHHHHHHH
Q 020630 86 VFAADLLGHGRSDGIRCY-L-GDMEKVAASSLSFFKHVR 122 (323)
Q Consensus 86 vi~~d~~G~G~s~~~~~~-~-~~~~~~~~d~~~~i~~l~ 122 (323)
+|++| ||||..+.-... . ..-.++.-++...+..+-
T Consensus 2 ~I~iD-pGHGg~d~GA~~~~g~~E~~~~l~ia~~l~~~L 39 (189)
T TIGR02883 2 IIVID-PGHGGIDGGAVGKDGTLEKDITLEIALKLKDYL 39 (189)
T ss_pred EEEEe-CCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 57778 899977632211 1 123344455555444443
No 477
>PRK07791 short chain dehydrogenase; Provisional
Probab=24.73 E-value=3.2e+02 Score=21.64 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=22.5
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
+++|-|..+. .-..+++.|++.|++|+..+.+
T Consensus 8 ~~lITGas~G---IG~aia~~la~~G~~vii~~~~ 39 (286)
T PRK07791 8 VVIVTGAGGG---IGRAHALAFAAEGARVVVNDIG 39 (286)
T ss_pred EEEEECCCch---HHHHHHHHHHHCCCEEEEeeCC
Confidence 4566665533 3356788898999999998754
No 478
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=24.50 E-value=2.6e+02 Score=23.22 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCCcEEEEeccccC------------cCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEech
Q 020630 72 FQKICISYATWGYAVFAADLLGH------------GRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGESM 139 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d~~G~------------G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S~ 139 (323)
-..+.+.|.++|++|..+-+--- =.|.++- +. ..++.....++.+... ++=++|.|+
T Consensus 190 K~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPG----DP-~~~~~~i~~ik~l~~~------~iPifGICL 258 (368)
T COG0505 190 KRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPG----DP-APLDYAIETIKELLGT------KIPIFGICL 258 (368)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCC----Ch-hHHHHHHHHHHHHhcc------CCCeEEEcH
Confidence 34678889999999988765421 1121221 22 2234444444544432 446899999
Q ss_pred hHHHHHHHH
Q 020630 140 GGAATMLMY 148 (323)
Q Consensus 140 Gg~~a~~~a 148 (323)
|=.+...+.
T Consensus 259 GHQllalA~ 267 (368)
T COG0505 259 GHQLLALAL 267 (368)
T ss_pred HHHHHHHhc
Confidence 988765544
No 479
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=24.35 E-value=4.6e+02 Score=23.59 Aligned_cols=95 Identities=8% Similarity=-0.026 Sum_probs=47.6
Q ss_pred eEEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCC---CCCCChHHHHhhHHHHHHHHHhhCCCCCCCE
Q 020630 56 ATVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIR---CYLGDMEKVAASSLSFFKHVRHSEPYRDLPA 132 (323)
Q Consensus 56 ~~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~---~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~ 132 (323)
..+|++-|-++. . .-..+.+++.++|+.+-++-.|..-..+-.. ....-++..++-+.++++.+..+......++
T Consensus 168 d~LviIGGddS~-~-~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~~~~~ 245 (550)
T cd00765 168 DALVVIGGDDSN-T-NAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYW 245 (550)
T ss_pred CEEEEeCCchHH-H-HHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 467777666543 2 3456777777778544444334332222111 1223567777777777766653211001122
Q ss_pred --E-EEEechhHHHHHHHHh-hcCC
Q 020630 133 --F-LFGESMGGAATMLMYF-QSEP 153 (323)
Q Consensus 133 --~-l~G~S~Gg~~a~~~a~-~~p~ 153 (323)
+ ++|-+.| ++|+..+. ..|+
T Consensus 246 ~~VEvMGR~aG-~LAl~~aLat~p~ 269 (550)
T cd00765 246 HFVKLMGRSAS-HIALECALKTHPN 269 (550)
T ss_pred EEEEeCCCchH-HHHHHHHHhcCCC
Confidence 2 6787754 55554443 3443
No 480
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=24.33 E-value=3e+02 Score=20.39 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=51.0
Q ss_pred EEEEecCCCCCcc---hhhHHHHHHHhcCCcEEEEecccc-CcCCCC----------CCCCCCChHHHHhhHHHHHHHHH
Q 020630 57 TVYMTHGYGSDTG---WMFQKICISYATWGYAVFAADLLG-HGRSDG----------IRCYLGDMEKVAASSLSFFKHVR 122 (323)
Q Consensus 57 ~vv~~hG~~~~~~---~~~~~~~~~l~~~g~~vi~~d~~G-~G~s~~----------~~~~~~~~~~~~~d~~~~i~~l~ 122 (323)
.||=..|.+.... ..-+.++..|.++|+.|.++-... ++.... +.......+.+.-|+.+++..+.
T Consensus 5 aIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~al~ 84 (185)
T PF09314_consen 5 AIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLHALR 84 (185)
T ss_pred EEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHHHHH
Confidence 4555667765543 133445566666677766654432 222210 11112247788888888888874
Q ss_pred hhCC--CCCCCEEEEEechhHHHHHHHHh
Q 020630 123 HSEP--YRDLPAFLFGESMGGAATMLMYF 149 (323)
Q Consensus 123 ~~~~--~~~~~~~l~G~S~Gg~~a~~~a~ 149 (323)
.... ....=++++|.+.|+.+...+-.
T Consensus 85 ~~~~~~~~~~ii~ilg~~~g~~~~~~~r~ 113 (185)
T PF09314_consen 85 FIKQDKIKYDIILILGYGIGPFFLPFLRK 113 (185)
T ss_pred HHhhccccCCEEEEEcCCccHHHHHHHHh
Confidence 2210 00113568899988887765433
No 481
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=3.9e+02 Score=21.66 Aligned_cols=101 Identities=11% Similarity=-0.030 Sum_probs=59.5
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCCCCCC-------------------CCChHHHHhhHHHH
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDGIRCY-------------------LGDMEKVAASSLSF 117 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~-------------------~~~~~~~~~d~~~~ 117 (323)
..|++-|.+.+.......+++.....|-.++.+|.--.+........ ...-..++.--.++
T Consensus 3 krIyVvgT~DTKg~EL~ylad~I~~aG~~~v~vDvs~~~~~~~~~dis~~~VA~~hp~~~qAv~~~~Drg~AiaaMa~A~ 82 (401)
T COG5441 3 KRIYVVGTADTKGEELAYLADLIEAAGGSPVLVDVSTLRNPTSEVDISAEDVAGAHPGGRQAVLDGNDRGSAIAAMAEAF 82 (401)
T ss_pred ceEEEEecCCCcchhHHHHHHHHHHcCCCeEEEEeeccCCCCCCcccCHHHHhhhCCCcceeEeccCchhHHHHHHHHHH
Confidence 35677777777654667777777778999999997543222211000 00112233334466
Q ss_pred HHHHHhhCCCCCCCEEEEEechhHHHHHHHHhhcCCCCeeEEE
Q 020630 118 FKHVRHSEPYRDLPAFLFGESMGGAATMLMYFQSEPNTWTGLI 160 (323)
Q Consensus 118 i~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~i 160 (323)
.+.+..+.. -.-++-+|-|.|..++.-.+...|-- +-+++
T Consensus 83 ~r~l~sR~d--V~gmig~GGsgGT~lit~~m~~LPlg-vPK~m 122 (401)
T COG5441 83 VRFLSSRGD--VAGMIGMGGSGGTALITPAMRRLPLG-VPKVM 122 (401)
T ss_pred HHHhhcccc--hhheeecCCCcchHhhhhHHHhcCcC-Cccee
Confidence 666666543 22456778888888888777776654 44433
No 482
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=24.20 E-value=2.5e+02 Score=19.47 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=28.2
Q ss_pred CceEEEEecCCCCCc---chhhHHHHHHHhcCCc---EEEEecccc
Q 020630 54 VKATVYMTHGYGSDT---GWMFQKICISYATWGY---AVFAADLLG 93 (323)
Q Consensus 54 ~~~~vv~~hG~~~~~---~~~~~~~~~~l~~~g~---~vi~~d~~G 93 (323)
..-+||+.|+..+.. ...+..+...|...|| ++++++..|
T Consensus 16 k~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSylNIfs~~~~~ 61 (146)
T PF04763_consen 16 KNVVVVCNHSWPGPESLPPESVSLLIEELEESGYSYLNIFSCSSES 61 (146)
T ss_pred CcEEEEEeCCcccccCCChHHHHHHHHHHhhcCCceEEEEEEcCCC
Confidence 356788889887542 2256778889988888 677777654
No 483
>PLN02924 thymidylate kinase
Probab=24.12 E-value=1.9e+02 Score=22.04 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=29.6
Q ss_pred CCceEEEEecCCCCCc-chhhHHHHHHHhcCCcEEEEecccc
Q 020630 53 KVKATVYMTHGYGSDT-GWMFQKICISYATWGYAVFAADLLG 93 (323)
Q Consensus 53 ~~~~~vv~~hG~~~~~-~~~~~~~~~~l~~~g~~vi~~d~~G 93 (323)
..++.+|.+=|..++. ...-..+.+.|..+|+.|+....|+
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~ 54 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPD 54 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCC
Confidence 3456777777876653 3356778888888899988777665
No 484
>PRK06953 short chain dehydrogenase; Provisional
Probab=24.04 E-value=1.4e+02 Score=22.46 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=21.8
Q ss_pred EEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 59 YMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 59 v~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
+++.|..+. .-..+++.|.++|++|+..+..
T Consensus 4 vlvtG~sg~---iG~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 4 VLIVGASRG---IGREFVRQYRADGWRVIATARD 34 (222)
T ss_pred EEEEcCCCc---hhHHHHHHHHhCCCEEEEEECC
Confidence 556666543 3346778888889999998743
No 485
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=24.00 E-value=2.2e+02 Score=18.78 Aligned_cols=76 Identities=11% Similarity=-0.000 Sum_probs=48.0
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcC-CcEEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEE
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATW-GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLF 135 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~-g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~ 135 (323)
.||.-|| . -+. .....++.+... --.+.++++.- . .+.+++.+.+.+.++.+.. ...+.++
T Consensus 2 iii~sHG-~-~A~-g~~~~~~~i~G~~~~~i~~~~~~~--------~--~~~~~~~~~l~~~i~~~~~-----~~~vlil 63 (116)
T PF03610_consen 2 IIIASHG-S-LAE-GLLESAEMILGEDQDNIEAVDLYP--------D--ESIEDFEEKLEEAIEELDE-----GDGVLIL 63 (116)
T ss_dssp EEEEEET-T-HHH-HHHHHHHHHHTSTCSSEEEEEETT--------T--SCHHHHHHHHHHHHHHCCT-----TSEEEEE
T ss_pred EEEEECc-H-HHH-HHHHHHHHHcCCCcccEEEEECcC--------C--CCHHHHHHHHHHHHHhccC-----CCcEEEE
Confidence 5788899 3 233 455566666655 24667776541 1 2688888888888877653 3367777
Q ss_pred EechhHHHHHHHHhh
Q 020630 136 GESMGGAATMLMYFQ 150 (323)
Q Consensus 136 G~S~Gg~~a~~~a~~ 150 (323)
--=.||...-.++..
T Consensus 64 ~Dl~ggsp~n~a~~~ 78 (116)
T PF03610_consen 64 TDLGGGSPFNEAARL 78 (116)
T ss_dssp ESSTTSHHHHHHHHH
T ss_pred eeCCCCccchHHHHH
Confidence 777777665554443
No 486
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=23.86 E-value=3.9e+02 Score=21.60 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred EEEEecCCCCC-cchhhHHHHHHHhcCCcEEEEecccc
Q 020630 57 TVYMTHGYGSD-TGWMFQKICISYATWGYAVFAADLLG 93 (323)
Q Consensus 57 ~vv~~hG~~~~-~~~~~~~~~~~l~~~g~~vi~~d~~G 93 (323)
.+++++|.+.. .......+++.|.++|+.|..+...+
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 34555655322 23255678899988899988776544
No 487
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=23.81 E-value=29 Score=29.78 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=23.0
Q ss_pred CEEEEEechhHHHHHHHHhhcCCCCeeEEE
Q 020630 131 PAFLFGESMGGAATMLMYFQSEPNTWTGLI 160 (323)
Q Consensus 131 ~~~l~G~S~Gg~~a~~~a~~~p~~~v~~~i 160 (323)
|=++.|-|+||.+|..++.+..+. ++.+.
T Consensus 203 P~IIsGsS~GaivAsl~~v~~~eE-l~~Ll 231 (543)
T KOG2214|consen 203 PNIISGSSAGAIVASLVGVRSNEE-LKQLL 231 (543)
T ss_pred chhhcCCchhHHHHHHHhhcchHH-HHHHh
Confidence 668999999999999999886555 55543
No 488
>PRK05866 short chain dehydrogenase; Provisional
Probab=23.78 E-value=2.3e+02 Score=22.66 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=22.4
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.++|-|.++. .-..+++.|+++|++|++.+..
T Consensus 42 ~vlItGasgg---IG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 42 RILLTGASSG---IGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred EEEEeCCCcH---HHHHHHHHHHHCCCEEEEEECC
Confidence 4556665433 3456788888899999998754
No 489
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=23.77 E-value=2.8e+02 Score=19.87 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=41.2
Q ss_pred HHHhcCCc-EEEEeccccCcCCCCCCCCCCChHHHHhhHHHHHHHHHhhCCCCCCCEEEEEec-hhHHHHHHHHhhcCCC
Q 020630 77 ISYATWGY-AVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRHSEPYRDLPAFLFGES-MGGAATMLMYFQSEPN 154 (323)
Q Consensus 77 ~~l~~~g~-~vi~~d~~G~G~s~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~~~l~G~S-~Gg~~a~~~a~~~p~~ 154 (323)
+.+...|. +|+.++.+... .++.+.+++-+.++++... ..++|+|+| .|..++-++|.+..-.
T Consensus 45 ~~~~~~Gad~v~~~~~~~~~--------~~~~~~~a~al~~~i~~~~-------p~~Vl~~~t~~g~~la~rlAa~L~~~ 109 (168)
T cd01715 45 AALKAYGADKVLVAEDPALA--------HYLAEPYAPALVALAKKEK-------PSHILAGATSFGKDLAPRVAAKLDVG 109 (168)
T ss_pred HHHHhcCCCEEEEecChhhc--------ccChHHHHHHHHHHHHhcC-------CCEEEECCCccccchHHHHHHHhCCC
Confidence 34444555 56666543211 1256677777777776542 268888887 4767888888774332
Q ss_pred CeeEEEEc
Q 020630 155 TWTGLIFS 162 (323)
Q Consensus 155 ~v~~~il~ 162 (323)
-+..++-+
T Consensus 110 ~vtdv~~l 117 (168)
T cd01715 110 LISDVTAL 117 (168)
T ss_pred ceeeEEEE
Confidence 14444444
No 490
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=23.71 E-value=64 Score=25.20 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=16.2
Q ss_pred EEEEechhHHHHHHHHhh
Q 020630 133 FLFGESMGGAATMLMYFQ 150 (323)
Q Consensus 133 ~l~G~S~Gg~~a~~~a~~ 150 (323)
.++|-|.||.+|+.++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 589999999999998876
No 491
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=23.70 E-value=83 Score=22.20 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=11.1
Q ss_pred EEEEEechhHHHH
Q 020630 132 AFLFGESMGGAAT 144 (323)
Q Consensus 132 ~~l~G~S~Gg~~a 144 (323)
.+++|.|.|+++.
T Consensus 70 ~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 70 GVIIGTSAGAMIL 82 (154)
T ss_dssp SEEEEETHHHHCT
T ss_pred CEEEEEChHHhhc
Confidence 6899999999773
No 492
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.69 E-value=1.7e+02 Score=22.83 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=23.2
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
.|+++-|-|.|.. .--.+++.|..+||+|.++-
T Consensus 62 ~V~VlcG~GNNGG-DGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 62 RVLLVCGPGNNGG-DGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred eEEEEECCCCCch-hHHHHHHHHHHCCCeEEEEE
Confidence 4666667666655 33457888988899987765
No 493
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=23.68 E-value=1.6e+02 Score=22.83 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=20.5
Q ss_pred EEEecCCCCCcchhhHHH-HHHHhcC-CcEEEEecc
Q 020630 58 VYMTHGYGSDTGWMFQKI-CISYATW-GYAVFAADL 91 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~-~~~l~~~-g~~vi~~d~ 91 (323)
.|.+-|=|++.......+ +..|.++ ||+|+++|-
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 355666665543244433 5555555 599999994
No 494
>PRK03094 hypothetical protein; Provisional
Probab=23.67 E-value=94 Score=19.16 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.8
Q ss_pred hHHHHHHHhcCCcEEEEec
Q 020630 72 FQKICISYATWGYAVFAAD 90 (323)
Q Consensus 72 ~~~~~~~l~~~g~~vi~~d 90 (323)
...+.+.|.++||.|+-+.
T Consensus 10 Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred cHHHHHHHHHCCCEEEecC
Confidence 4568889999999998775
No 495
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.54 E-value=1.5e+02 Score=22.83 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=23.2
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEeccc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADLL 92 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~~ 92 (323)
.++|-|.++... .-..+++.|+++|+.|++.+.+
T Consensus 7 ~vlItGas~~~g-iG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 7 IALVTGASRLNG-IGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred EEEEeCCCCCCC-HHHHHHHHHHHcCCcEEEEcCC
Confidence 466777653222 3345788888899999998764
No 496
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.53 E-value=1.5e+02 Score=23.07 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=22.5
Q ss_pred EEEEecCCCCCcchhhHHHHHHHhcCCcEEEEec
Q 020630 57 TVYMTHGYGSDTGWMFQKICISYATWGYAVFAAD 90 (323)
Q Consensus 57 ~vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d 90 (323)
-+++|-|.+.+.. .-..+++.|+++|++|+..+
T Consensus 9 k~~lITGas~~~G-IG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 9 KKGLITGIANNMS-ISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred cEEEEECCCCCcc-hHHHHHHHHHHcCCEEEEEe
Confidence 3566777664323 33567888998999998765
No 497
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=23.53 E-value=1.6e+02 Score=25.13 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=25.9
Q ss_pred eEEEEecCCCCC-cchhhHHHHHHHhcCCcEEEEeccccCcC
Q 020630 56 ATVYMTHGYGSD-TGWMFQKICISYATWGYAVFAADLLGHGR 96 (323)
Q Consensus 56 ~~vv~~hG~~~~-~~~~~~~~~~~l~~~g~~vi~~d~~G~G~ 96 (323)
.+|.+...=||. ....-..++..|+..|++|+.+|+=-.|.
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~ 163 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQAS 163 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 344444333333 23245567888999999999999855543
No 498
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=23.45 E-value=58 Score=25.54 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.2
Q ss_pred CEE-EEEechhHHHHHHHHhhcCCC
Q 020630 131 PAF-LFGESMGGAATMLMYFQSEPN 154 (323)
Q Consensus 131 ~~~-l~G~S~Gg~~a~~~a~~~p~~ 154 (323)
++. ++|-|+|+.-+..+....+.+
T Consensus 40 ~f~~~~GvSAGA~n~~aYls~Q~gr 64 (292)
T COG4667 40 PFDLVVGVSAGALNLVAYLSKQRGR 64 (292)
T ss_pred CcCeeeeecHhHHhHHHHhhcCCch
Confidence 444 899999999999998887776
No 499
>PRK08703 short chain dehydrogenase; Provisional
Probab=23.39 E-value=1.4e+02 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=21.0
Q ss_pred EEEecCCCCCcchhhHHHHHHHhcCCcEEEEecc
Q 020630 58 VYMTHGYGSDTGWMFQKICISYATWGYAVFAADL 91 (323)
Q Consensus 58 vv~~hG~~~~~~~~~~~~~~~l~~~g~~vi~~d~ 91 (323)
.+++.|..+. .=..+++.|.++|++|+..+.
T Consensus 8 ~vlItG~sgg---iG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 8 TILVTGASQG---LGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred EEEEECCCCc---HHHHHHHHHHHcCCEEEEEeC
Confidence 4555565433 334578888889999998873
No 500
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=23.37 E-value=1.7e+02 Score=23.85 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=0.0
Q ss_pred EEEEec----CCCCCcchhhHHHHHHHhcCCcEEEEeccccCcCCCC
Q 020630 57 TVYMTH----GYGSDTGWMFQKICISYATWGYAVFAADLLGHGRSDG 99 (323)
Q Consensus 57 ~vv~~h----G~~~~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~ 99 (323)
+||.+- |..+-.. .-..+++.|.++|+++..+. ||||.+..
T Consensus 29 PVIsVGNitvGGTGKTP-~v~~La~~l~~~G~~~~IlS-RGYg~~~~ 73 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTP-VVVWLAELLKDRGLRVGVLS-RGYGSKTK 73 (311)
T ss_pred CEEEEeccccCCcChHH-HHHHHHHHHHHCCCEEEEEC-CCCCCCCC
Done!