RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020631
(323 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 589 bits (1522), Expect = 0.0
Identities = 222/317 (70%), Positives = 270/317 (85%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S ERRIIL A G E+ L DPA G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186
+G + K EEIL +TPNGY+L QFENPANP+IHYETTGPEIW +GGK+D F++GIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 TVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
T+TGAG++LKE+N N+K+YG+EP ESA+L+GG+PG H IQGIGAG IP VL+V ++DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306
VSS+E+I+ ++ LALKEGLLVGISSGAAAAAAI++A+RPENAGKL V IFPS GERYLS
Sbjct: 245 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 304
Query: 307 TALFESIRHEVENMPID 323
T LF++ R E E M +
Sbjct: 305 TVLFDATRKEAEAMTFE 321
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 593 bits (1532), Expect = 0.0
Identities = 224/322 (69%), Positives = 269/322 (83%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
D I +V++LIG TPMVYLN++ GCVA IAAKLE+M+PC SVKDRI YSM+ DAE
Sbjct: 108 PDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQ 167
Query: 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121
KG I+PGK+VL+E TSGNTGIGLAFIAASRGY+LI+ MP++ S+ERR++L+A GAE+ L
Sbjct: 168 KGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLT 227
Query: 122 DPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAG 181
DPA G G V+K EEIL TP+ Y+L QF+NPANP+IHYETTGPEIW+D+ GKVD F+AG
Sbjct: 228 DPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAG 287
Query: 182 IGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAM 241
IGTGGT+TG GRF+KEKNP +V G+EP+ES +L+GG+PG H IQGIGAG IP LD +
Sbjct: 288 IGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKI 347
Query: 242 LDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAG 301
+DEVI +SSEEAIET+K LALKEGL+VGISSGAAAAAAI+VAKRPENAGKLI V+FPS G
Sbjct: 348 MDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFG 407
Query: 302 ERYLSTALFESIRHEVENMPID 323
ERYLST LF+SIR EVE M +
Sbjct: 408 ERYLSTPLFQSIREEVEKMQPE 429
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 587 bits (1516), Expect = 0.0
Identities = 147/321 (45%), Positives = 214/321 (66%), Gaps = 1/321 (0%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
+ + + + +LIG TP +YLN + + A++ K+E P +SVKDR+ +++ AE
Sbjct: 6 DKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEK 64
Query: 62 KGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121
+G + PGK++++E +SGNTG+ LA + A RGYK+II MP + S+ERR +LR GAEV L
Sbjct: 65 EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILT 124
Query: 122 DPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAG 181
A+G +G V ++I+ PN + QF N IH ETTGPEIW + VD FIAG
Sbjct: 125 PAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAG 184
Query: 182 IGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAM 241
+GTGGT+TG R LK+ + ++ +EP+ES VL+GG+PG H IQGIG G +P VLD ++
Sbjct: 185 VGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSL 244
Query: 242 LDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAG 301
+DEV+ V+ ++AIET+ L +G+ G S GA AA+++A+RPE GK IV + PS G
Sbjct: 245 IDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFG 304
Query: 302 ERYLSTALFESIRHEVENMPI 322
ERYLST L+ S+R EV ++P+
Sbjct: 305 ERYLSTTLYRSVRDEVSSLPV 325
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 569 bits (1469), Expect = 0.0
Identities = 168/311 (54%), Positives = 220/311 (70%), Gaps = 1/311 (0%)
Query: 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
I +D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE G
Sbjct: 3 HMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAG 62
Query: 64 LITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADP 123
LI P T+++E TSGNTGI LA + A+RGY+ ++ MP T S+ERR++LRA GAE+ L
Sbjct: 63 LIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPG 121
Query: 124 AVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 183
A G G + K EE+ ++ QFENPANP IH TT E+W D+ GKVD +AG+G
Sbjct: 122 ADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVG 181
Query: 184 TGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLD 243
TGGT+TG + +KE+ P+ + +EP+ S VL+GGQ G H IQGIGAG +PPVLD ++D
Sbjct: 182 TGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVD 241
Query: 244 EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGER 303
E+ITV +E+A+ ++ LA +EGLLVGISSGAA AA++VA+RPENAGKLIVV+ P GER
Sbjct: 242 EIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGER 301
Query: 304 YLSTALFESIR 314
YLST LF +
Sbjct: 302 YLSTPLFADVA 312
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 545 bits (1406), Expect = 0.0
Identities = 159/316 (50%), Positives = 209/316 (66%), Gaps = 11/316 (3%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V L + G + K+E P SVK RI +M+ AE G +T
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 60
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
GK +++ TSGNTGI LA++AA+RGYK+ + MP T S+ER+ +L LG + L + A G
Sbjct: 61 KGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 127 FEGFVKKGEEILNRTPNGYI-LGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 185
+G + K EEI+ P+ Y+ L QFENPANP+IH ETTGPEIW D+ GKVD +AG+GTG
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 186 GTVTGAGRFLK-EKNPNIKVYGIEPSESAVLNGG------QPGKHLIQGIGAGVIPPVLD 238
G++TG R +K + I +EP ES V++ +PG H IQGIGAG IP LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 239 VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFP 298
++++D V TV S+ A+ T++ L +EG+L GISSGAA AAA R+AK PE A KLIVVI P
Sbjct: 240 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILP 299
Query: 299 SAGERYLSTALFESIR 314
SA ERYLSTALFE I
Sbjct: 300 SASERYLSTALFEGIE 315
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 542 bits (1400), Expect = 0.0
Identities = 135/326 (41%), Positives = 196/326 (60%), Gaps = 8/326 (2%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCV----ARIAAKLEMMQPCSSVKDRIAYSMIK 57
+ I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++
Sbjct: 8 SPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVY 67
Query: 58 DAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117
A G + PG +IE TSGNTGI L A GY++ I MPST S+ER++I++A GAE
Sbjct: 68 QAIKDGRLKPGME-IIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAE 126
Query: 118 VYLADPAVGFEGFVKKGEEILNRTPNGY-ILGQFENPANPEIHYETTGPEIWNDSGGKVD 176
+ L + G G +++ +++ P Y + QF NP N H+ T EIW D+ G+VD
Sbjct: 127 LILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVD 185
Query: 177 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPV 236
++ +GT GTV G LKEK IK+ +EP ESAVL G G H IQGIGAG IP +
Sbjct: 186 IVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDI 245
Query: 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 296
+DE+I + +++A + ++ + +G++ G+SSGAA A ++ A++PEN GK IV+I
Sbjct: 246 YKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVII 305
Query: 297 FPSAGERYLSTALFESIRHEVENMPI 322
PS GERYLST L++ I+ E + I
Sbjct: 306 VPSCGERYLSTDLYK-IKDEGTKIQI 330
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 541 bits (1396), Expect = 0.0
Identities = 144/302 (47%), Positives = 200/302 (66%), Gaps = 3/302 (0%)
Query: 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK- 69
V IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG 129
V++E TSGNTGIGLA IAASRGY+LI+ MP+ S ER+ +L+A GAE+ L DP
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 130 FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT 189
++ + ++ QF+NPAN HYETTGPE++ G++DAF+ G GTGGT+T
Sbjct: 123 AREEALRLKE-ELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 190 GAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVS 249
G GR+LKE+ P++KV +EP+ S VL+GG+ G+H QG+G G IP LD+++LD VI V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 250 SEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTAL 309
E+A ++ LA +EGL +G+SSG AA++VA R GK + I P G +YLST L
Sbjct: 242 EEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-RELGPGKRVACISPDGGWKYLSTPL 300
Query: 310 FE 311
+
Sbjct: 301 YA 302
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 524 bits (1353), Expect = 0.0
Identities = 164/305 (53%), Positives = 216/305 (70%), Gaps = 3/305 (0%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+TELIG TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G +
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
PG T ++E TSGNTGIGLA +AA++GYK +++MP T S+ERR +LRA GAE+ L A G
Sbjct: 64 PGDT-IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186
G + K EE++ R ++ QF+N ANPEIH TTG EI G ++DAF+AG+GTGG
Sbjct: 123 MRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 187 TVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVI 246
T+TGAG+ L+E PNIK+Y +EP++S VL+GG+PG H IQGIGAG +P +LD ++ D VI
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVI 241
Query: 247 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 306
TV++EEA ++ A +EG+L GISSGAA AA++VAK GK ++ I PS GERYLS
Sbjct: 242 TVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVLAIIPSNGERYLS 300
Query: 307 TALFE 311
T L++
Sbjct: 301 TPLYQ 305
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 498 bits (1284), Expect = e-180
Identities = 148/302 (49%), Positives = 198/302 (65%), Gaps = 10/302 (3%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+ LIG TP+V L+++ +RI KLE P SVKDR A MI DAE +GL+
Sbjct: 10 HHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK 65
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
G ++E TSGN GI +A I A RG+++I+ MP T S+ERR +L+ LGAE+ L +G
Sbjct: 66 NG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELG 122
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 186
+G V+K EI R ++L QFENP N H TTGPEI ++DAF+AG+GTGG
Sbjct: 123 MKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGG 181
Query: 187 TVTGAGRFLKEK-NPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245
T++G GR LK +K+ +EP++S VL+GGQPGKH IQGIGAG +P +LD +++DEV
Sbjct: 182 TISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEV 241
Query: 246 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYL 305
ITV EEA E ++ LA KEGLLVGISSGA AAA++VA++ + +V + P ERYL
Sbjct: 242 ITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDAR-VVTVAPDHAERYL 300
Query: 306 ST 307
S
Sbjct: 301 SI 302
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 477 bits (1231), Expect = e-172
Identities = 124/302 (41%), Positives = 179/302 (59%), Gaps = 11/302 (3%)
Query: 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 69
+ + IG+TP+V L + + + KLE P SVKDR A SMI +AE +G I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
Query: 70 TVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG 129
LIE TSGNTGI LA IAA +GY++ ++MP S ERR +RA GAE+ L G EG
Sbjct: 63 V-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 130 FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT 189
E+ NR G +L QF NP NP HY TTGPEIW +GG++ F++ +GT GT+T
Sbjct: 122 ARDLALEMANRGE-GKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 190 GAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVS 249
G RF++E++ + + G++P E + + G I+ +P + + +++DEV+ +
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIH 233
Query: 250 SEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTAL 309
+A T + LA++EG+ G+SSG A A A+RVA N ++V I G+RYLST +
Sbjct: 234 QRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--ANPDAVVVAIICDRGDRYLSTGV 291
Query: 310 FE 311
F
Sbjct: 292 FG 293
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 477 bits (1229), Expect = e-171
Identities = 113/323 (34%), Positives = 170/323 (52%), Gaps = 18/323 (5%)
Query: 7 IKKDVTELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDA 59
+ + +G+TP+V L + DG R+ AKLE P S+KDR A MI+ A
Sbjct: 5 RYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQA 64
Query: 60 EDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY 119
E GL+ PG T ++E TSGNTGI LA A +GY+LI +MP S+ERR +L GA++
Sbjct: 65 EADGLLRPGAT-ILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQII 123
Query: 120 LADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFI 179
+ G V +E+ P+ +L Q+ NPAN + HY TGPE+ D ++ F+
Sbjct: 124 FSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFV 182
Query: 180 AGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDV 239
AG+GT GT+ G GRFL+E N+K+ EP G + ++ + G +P + D
Sbjct: 183 AGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDP 235
Query: 240 AMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGK--LIVVIF 297
+L +V + +A+ ++ L EG+ GIS+GA AA+ V AG+ I ++
Sbjct: 236 EILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALAAGERADIALVV 295
Query: 298 PSAGERYLSTALFESIRHEVENM 320
AG +YLST + + E
Sbjct: 296 ADAGWKYLSTGAYAGSLDDAETA 318
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 454 bits (1170), Expect = e-159
Identities = 119/321 (37%), Positives = 176/321 (54%), Gaps = 12/321 (3%)
Query: 1 MEDKCEIKKDVTELIGHTPMVYLNNVV--DGCVARIAAKLEMMQPCSSVKDRIAYSMIKD 58
+ + +I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++D
Sbjct: 44 IAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQD 103
Query: 59 AEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEV 118
AE++GL+ PG T +IE TSGNTGIGLA A +GYK II+MP S E+ LR LGA++
Sbjct: 104 AEEQGLLKPGYT-IIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKI 162
Query: 119 YLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKV 175
+ EG + +++ TPN +L Q+ N NP HY+ T EI KV
Sbjct: 163 IRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKV 222
Query: 176 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV-----LNGGQPGKHLIQGIGA 230
D + GT GT++G GR +KE+ P+ ++ G++P S + LN + ++GIG
Sbjct: 223 DMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGY 282
Query: 231 GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAG 290
P V D ++D + + S+ L +EGLL G SSG A AA+ A++ G
Sbjct: 283 DFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARK-LKKG 341
Query: 291 KLIVVIFPSAGERYLSTALFE 311
+ VVI P Y++ + +
Sbjct: 342 QRCVVILPDGIRNYMTKFVSD 362
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 447 bits (1151), Expect = e-157
Identities = 128/315 (40%), Positives = 179/315 (56%), Gaps = 12/315 (3%)
Query: 7 IKKDVTELIGHTPMVYLNNVV--DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 65 ITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA 124
+ PG T +IE TSGNTGIGLA AA RGY+ II+MP S E+ +LRALGAE+
Sbjct: 158 LKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216
Query: 125 VGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAG 181
F E V + N PN +IL Q+ N +NP HY+TT EI GK+D +A
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 182 IGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV-----LNGGQPGKHLIQGIGAGVIPPV 236
+GTGGT+TG R LKEK P ++ G++P S + LN + + ++GIG IP V
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTV 336
Query: 237 LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 296
LD ++D+ + EEA +++L +EGLL G S+G+ A A++ A+ + G+ VVI
Sbjct: 337 LDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQ-EGQRCVVI 395
Query: 297 FPSAGERYLSTALFE 311
P + Y++ L +
Sbjct: 396 LPDSVRNYMTKFLSD 410
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 442 bits (1138), Expect = e-156
Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 17/305 (5%)
Query: 10 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPG 68
D E TP+V + R+ KLE P S SVKDR A +I + + G
Sbjct: 89 DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFE 128
+ + TS N G+ L+ +A GY+ + +P +++ R LGA+V + A
Sbjct: 146 SL-VADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 129 GFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND---SGGKVDAFIAGIGTG 185
+ + + ++ + QF N AN E H T EI+ G + +GT
Sbjct: 205 HLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 186 GTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEV 245
G ++ A +L+ +P+I+ ++P++ + G I+ + G++ + + +
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRRVETGMLWI-NMLDISYTL 315
Query: 246 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYL 305
V+ EEA+E +A +GL++G S GAA A + A + VV+ P G +YL
Sbjct: 316 AEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYL 375
Query: 306 STALF 310
S
Sbjct: 376 SLVQN 380
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 87.6 bits (218), Expect = 6e-20
Identities = 68/311 (21%), Positives = 115/311 (36%), Gaps = 56/311 (18%)
Query: 15 IGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAY----SMIKDAEDKGLITPGKT 70
TP++ + V VA + K E Q + K R A + + G++T
Sbjct: 24 ANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTF--- 80
Query: 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGF 130
+SGN +A A G IIMP + + G +V + D +
Sbjct: 81 -----SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDR 133
Query: 131 VKKGEEILNRTPNGYILGQFENPANPEIH-YE---------TTGPEIWNDSGGKVDAFIA 180
K +EI R G + I Y+ T E++ + G +DA
Sbjct: 134 EKMAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVGP-LDALFV 180
Query: 181 GIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQPGKH----------LIQ 226
+G GG ++G+ + PN +VYG+EP G Q
Sbjct: 181 CLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQ 240
Query: 227 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLV-GISSGAAAAAAIRVAKR 285
+G + + +D+++TVS EE I+ K A + ++V +G + AA R K
Sbjct: 241 HLGNYTFSIIKE--KVDDILTVSDEELIDCLKFYAARMKIVVEP--TGCLSFAAARAMKE 296
Query: 286 PENAGKLIVVI 296
++ ++I
Sbjct: 297 KLKNKRIGIII 307
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 86.8 bits (216), Expect = 1e-19
Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 56/309 (18%)
Query: 17 HTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAED-KGLITPGKTVLIEL 75
TP++ + R+ K E +Q S K R A S E+ KGL+
Sbjct: 20 RTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENPKGLLAV-------- 71
Query: 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGE 135
+SGN G+A+ A G K +++MP S ++ RA GAEV + +
Sbjct: 72 SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEVAR 129
Query: 136 EILNRTPNGYILGQFENPANPEIH-YE---------TTGPEIWN---DSGGKVDAFIAGI 182
+ T GY L IH ++ T G E+ G A +A +
Sbjct: 130 ALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPV 177
Query: 183 GTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQPGKHLIQ------GIGA-- 230
G GG + G +K +P V G+EP + L G+ + G+
Sbjct: 178 GGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLS 237
Query: 231 -GVIP-PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLV-GISSGAAAAAAIRVAKRPE 287
G P+L +D ++TVS E +E +LL + +V +GA AA+ +
Sbjct: 238 LGERTFPILR-ERVDGILTVSEEALLEAERLLFTRTKQVVEP--TGALPLAAVL--EHGA 292
Query: 288 NAGKLIVVI 296
+ + ++
Sbjct: 293 RLPQTLALL 301
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 87.2 bits (217), Expect = 1e-19
Identities = 68/309 (22%), Positives = 127/309 (41%), Gaps = 47/309 (15%)
Query: 15 IGHTPMVY---LNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTV 71
I TP++ LN + + K E+ Q S K R A + ++ L K V
Sbjct: 23 IHLTPVLTSSILNQLTG---RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAV 79
Query: 72 LIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFV 131
+ +SGN G L + A G I++P T +++ ++A GA + +P+ E
Sbjct: 80 -VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRE 136
Query: 132 KKGEEILNRTPNGYILGQFENPANPEIH-YE---------TTGPEIWNDSGGKVDAFIAG 181
+ + T I+ +H + T E+ N VDA +
Sbjct: 137 NVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVPL-VDALVVP 183
Query: 182 IGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQPGKHLIQ------GIGA- 230
+G GG + G +K P++KVY EPS + G+ +L G+ +
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS 243
Query: 231 -GVIP-PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN 288
G+ P++ ++D++ TV+ +E ++L+ + LL+ ++G AA + + +
Sbjct: 244 IGLNTWPIIR-DLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVS 302
Query: 289 A-GKLIVVI 296
K I ++
Sbjct: 303 PEVKNICIV 311
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 85.4 bits (212), Expect = 6e-19
Identities = 55/324 (16%), Positives = 97/324 (29%), Gaps = 58/324 (17%)
Query: 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIK--- 57
M E L TP+ + + K++ QP S K R K
Sbjct: 30 MGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA 89
Query: 58 DAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAE 117
+ ++GN G+ A+ A G I++P T L+ GA
Sbjct: 90 KQGCAHFVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGAT 141
Query: 118 VYLA----DPAVGFEGFVKKGEEILNRTPNGY----------ILGQFENPANPEIHYETT 163
+ D A + + + P G +
Sbjct: 142 CKVVGELLDEA------FELAKALAKNNPGWVYIPPFDDPLIWEGH-----------ASI 184
Query: 164 GPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKE-KNPNIKVYGIEPSESAVLNGGQPGK 222
E+ K A +G GG + G + L+E ++ V +E + +
Sbjct: 185 VKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAG 244
Query: 223 HLIQ---------GIGAGVIPPV-LDVAM--LDEVITVSSEEAIETSKLLALKEGLLVGI 270
L+ +G + L + +S +EA+ + E +LV
Sbjct: 245 KLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVE- 303
Query: 271 SSGAAAAAAIR--VAKRPENAGKL 292
+ AA AA+ V ++ + G L
Sbjct: 304 PACGAALAAVYSHVIQKLQLEGNL 327
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 83.1 bits (206), Expect = 4e-18
Identities = 64/301 (21%), Positives = 113/301 (37%), Gaps = 33/301 (10%)
Query: 16 GHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIEL 75
G TP++ N+ I K+E + P S KDR + DA G ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91
Query: 76 TSGNTGIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVKKG 134
++GNT A AA G +++P ++ + GA++ D F+ ++
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLELA 149
Query: 135 EEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRF 194
++ P ++ NP E +T EI + G D +G G +T +
Sbjct: 150 RKMAADFPTISLVNSV-NPVRIE-GQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYWKG 207
Query: 195 LKE--------KNPNIKVYGIEPSESAVLNGGQPGKH---LIQGIGAGVIPPVLDVAMLD 243
E K P ++ G + + +A L G+P H + I G P + ++
Sbjct: 208 YTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGS--PASWTSAVE 263
Query: 244 -------EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVV 295
+ S EE + L+A EG+ V +S A+ A ++ G +V
Sbjct: 264 AQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVC 323
Query: 296 I 296
Sbjct: 324 T 324
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 80.8 bits (200), Expect = 2e-17
Identities = 67/302 (22%), Positives = 114/302 (37%), Gaps = 34/302 (11%)
Query: 16 GHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLI 73
G+TP++ +N+ G +I K E + P S KDR I A + G +I
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83
Query: 74 ELTSGNTGIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVGFEGFVK 132
++GNT A AA G + +++P +I + GA+V F+ +
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFDDALN 141
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAG 192
+I + NP E +T EI + G D +G G +T
Sbjct: 142 IVRKIGEN--FPVEIVNSVNPYRIE-GQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYW 198
Query: 193 RFLKE--------KNPNIKVYGIEPSESAVLNGGQPGKH---LIQGIGAGVIPPVLD--V 239
+ K K P ++ G + +A + G P K+ + I G P +
Sbjct: 199 KGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGN-PYSWKSAL 255
Query: 240 AMLDE----VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIV 294
E + VS E + KL+A EG+ +S A+ A I++ + G+++
Sbjct: 256 KAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVT 315
Query: 295 VI 296
Sbjct: 316 CT 317
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 80.3 bits (199), Expect = 2e-17
Identities = 72/314 (22%), Positives = 113/314 (35%), Gaps = 53/314 (16%)
Query: 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
+ I T M N + C I K E MQ S K R A++ + + + KG++
Sbjct: 34 LAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVA 93
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVG 126
++GN G++ A G ++MP + AEV L
Sbjct: 94 C--------SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDN-- 143
Query: 127 FEGFVKKGEEILNRTPNGYILGQFENPANPEIH-YE---------TTGPEIWNDSGGKVD 176
F + K EI+ G I I Y+ T G EI D VD
Sbjct: 144 FNDTIAKVSEIVETE--GRIF----------IPPYDDPKVIAGQGTIGLEIMEDLY-DVD 190
Query: 177 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQP----GKHLI-QG 227
I IG GG + G +K NP IKV G++ G+ + G
Sbjct: 191 NVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADG 250
Query: 228 I---GAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLV-GISSGAAAAAAIRVA 283
G + + ++D+++ VS +E + L + ++ G +GA A AA+
Sbjct: 251 CDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEG--AGALACAALLSG 308
Query: 284 KRPEN-AGKLIVVI 296
K + + V I
Sbjct: 309 KLDSHIQNRKTVSI 322
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 79.5 bits (197), Expect = 4e-17
Identities = 59/321 (18%), Positives = 100/321 (31%), Gaps = 65/321 (20%)
Query: 14 LIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIK---DAEDKGLITPGKT 70
TP++ + + K E +QP S K R + + L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--- 60
Query: 71 VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA----DPAVG 126
+ GN GI A+ A G I++P + S++ L+ GAEV L D A
Sbjct: 61 -----SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEAN- 114
Query: 127 FEGFVKKGEEILNRTPNGY-----------ILGQFENPANPEIHYETTGPEIWNDSGGKV 175
+ +E+ R G+ G + E+
Sbjct: 115 -----LRAQELAKRD--GWENVPPFDHPLIWKGH-----------ASLVQELKAVLRTPP 156
Query: 176 DA-FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQ-------- 226
A +A G G L+ ++ + +E + N L+
Sbjct: 157 GALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVA 216
Query: 227 -GIGAGVIPPV-LDVA--MLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAA--- 279
+GA + L+ V EA+ + L E +LV + GAA AA
Sbjct: 217 KSLGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSG 276
Query: 280 ----IRVAKRPENAGKLIVVI 296
++ + +VVI
Sbjct: 277 LLRRLQAEGCLPPSLTSVVVI 297
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 79.4 bits (196), Expect = 9e-17
Identities = 50/240 (20%), Positives = 91/240 (37%), Gaps = 32/240 (13%)
Query: 76 TSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGE 135
++GN G+ + ++A G+K+ + M + ++ LR+ G V + + V++G
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYE--QDYGVAVEEGR 224
Query: 136 EILNRTPNGYILGQFENPANPEIHYETTGPEI---WNDSGGKVDAF-----IAGIGTGGT 187
+ PN + + EN + Y G + + G VDA G GG
Sbjct: 225 KAAQSDPNCFFI-DDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGG 283
Query: 188 VTGAGRFLKEK-NPNIKVYGIEPSESAV----LNGGQPGKHLIQGIG------------- 229
G LK ++ + EP+ S ++ G + +Q IG
Sbjct: 284 PGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVG 343
Query: 230 -AGVIP-PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE 287
A ++ +LD T+S + + LA +EG+ + S+ A A RV
Sbjct: 344 RASGFVGRAME-RLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVS 402
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 76.5 bits (189), Expect = 5e-16
Identities = 63/302 (20%), Positives = 115/302 (38%), Gaps = 34/302 (11%)
Query: 16 GHTPMVYLNNVVDGCV--ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLI 73
G TP++ L + R+ AK E + P S KDR + A + G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81
Query: 74 ELTSGNTGIGLAFIAASRGYKLIIIMPSTY-SIERRIILRALGAEVYLADPAVGFEGFVK 132
++GNT A AA G I+++P+ Y ++ + GA + + F+ ++
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALR 139
Query: 133 KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAG 192
+++ L NP E +T E+ ++ G +G G +T
Sbjct: 140 LTQKLTEA--FPVALVNSVNPHRLE-GQKTLAFEVVDELGDAPHYHALPVGNAGNITAHW 196
Query: 193 RFLKE--------KNPNIKVYGIEPSESAVLNGGQPGKH---LIQGIGAGVIPPVLD--V 239
K + P ++ G + + +A L G+P + L I G P V
Sbjct: 197 MGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGN-PASWQGAV 253
Query: 240 AMLDE----VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIV 294
+E + V+ EE + + LA +EG+ +S AA A ++ + +V
Sbjct: 254 RAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVV 313
Query: 295 VI 296
+
Sbjct: 314 LT 315
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 73.7 bits (181), Expect = 8e-15
Identities = 46/253 (18%), Positives = 77/253 (30%), Gaps = 34/253 (13%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFE 128
K T GN G G+A+ A G +I MP + ER + LGAE + D ++
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMN--YD 169
Query: 129 GFVKKGEEILNRTPNGYILGQ-FENPANPEIH------YETTGPEIW---NDSGGKVDAF 178
V+ + + +G+ + Q +I Y T E + G
Sbjct: 170 DTVRLTMQHAQQ--HGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHV 227
Query: 179 IAGIGTGGTVTGAGRFLKE--KNPNIKVYGIEPSESAV----LNGGQPGKHLIQ------ 226
+ G G G +L + N+ +EP ++ G
Sbjct: 228 LLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMA 287
Query: 227 GIG---AGVIP-PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGIS---SGAAAAAA 279
G+ + +L + I+ A ++L G I SGA
Sbjct: 288 GLACGEPNPLGWEILR-NCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLGV 346
Query: 280 IRVAKRPENAGKL 292
+ L
Sbjct: 347 LAAVHYHPQRQSL 359
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 73.8 bits (182), Expect = 8e-15
Identities = 73/330 (22%), Positives = 112/330 (33%), Gaps = 85/330 (25%)
Query: 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
V E TP+ + + I K E QP S K R AY+M+ ++ + G+IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA----D 122
++GN G+AF +A G K +I+MP+ + + +R G EV L D
Sbjct: 85 A--------SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFD 136
Query: 123 PAVGFEGFVKKGEEILNRTPNGY-----------ILGQFENPANPEIHYETTGPEIWNDS 171
A ++ ++ G+ I GQ T E+
Sbjct: 137 EA--KAKAIELSQQ------QGFTWVPPFDHPMVIAGQ-----------GTLALELLQQD 177
Query: 172 GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL-----NG--------- 217
+D +G GG G +K+ P IKV +E +SA L G
Sbjct: 178 A-HLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVG 236
Query: 218 --------GQPGKH---LIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGL 266
+ G L Q LD++ITV S+ K L
Sbjct: 237 LFAEGVAVKRIGDETFRLCQ-------------EYLDDIITVDSDAICAAMKDLFEDVRA 283
Query: 267 LVGISSGAAAAAAIRVAKRPENAGKLIVVI 296
+ S A A + G+ + I
Sbjct: 284 VAEPSGALALAGMKKYIALHNIRGERLAHI 313
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 71.7 bits (176), Expect = 4e-14
Identities = 51/311 (16%), Positives = 100/311 (32%), Gaps = 39/311 (12%)
Query: 16 GHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLI 73
G++ + + + + K + S KD ++ + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 74 ELTSGNTGIGLAFIAASRGYKLIIIMPS-TYSIERRIILRALGAEVYLADPAVG-FEGFV 131
++G+T L+ AS G I+ +P+ S+ + + A GA V D F+G +
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID---TDFDGCM 245
Query: 132 KKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKV-DAFIAGIGTGGTVTG 190
K EI L N E +T EI +V D I G G +
Sbjct: 246 KLIREITAE--LPIYLANSLNSLRLE-GQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYA 302
Query: 191 AGRFLK--------EKNPNIKVYGIEPSESA-VLNGGQPGKHLIQGIGAG-------VIP 234
+ K ++ P ++ + + + + + G + + A I
Sbjct: 303 FYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIG 360
Query: 235 -PVLDVAMLD-------EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRP 286
PV + V + EE ++ G+ + +G A A ++ +
Sbjct: 361 DPVSIDRAVYALKKCNGIVEEATEEELMDAMAQAD-STGMFICPHTGVALTALFKLRNQG 419
Query: 287 E-NAGKLIVVI 296
VV+
Sbjct: 420 VIAPTDRTVVV 430
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 69.9 bits (172), Expect = 1e-13
Identities = 72/318 (22%), Positives = 117/318 (36%), Gaps = 61/318 (19%)
Query: 11 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
V ++ +P+ + D K E Q S K R AY+M+ ++ DKG+IT
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113
Query: 67 PGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA----D 122
++GN G+A I+MP+T + +RALG +V L D
Sbjct: 114 A--------SAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFD 165
Query: 123 PAVGFEGFVKKGEEILNRTPNGY-----------ILGQFENPANPEIHYETTGPEIWNDS 171
A ++ E+ +G I GQ T G EI
Sbjct: 166 EA--QTHALELSEK------DGLKYIPPFDDPGVIKGQ-----------GTIGTEINRQL 206
Query: 172 GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQPGKHLIQG 227
+ A +G GG + G F K+ PN K+ G+EP +A L+ G K
Sbjct: 207 K-DIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVD 265
Query: 228 I---GAGVIPP---VLDVA--MLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAA 279
G V ++D ++ V+++ K + + ++ +SGA A A
Sbjct: 266 TFADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILE-TSGAVAIAG 324
Query: 280 IRV-AKRPENAGKLIVVI 296
+ + + IV I
Sbjct: 325 AAAYCEFYKIKNENIVAI 342
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 6e-08
Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 53/203 (26%)
Query: 87 IAASRGYKLIIIMPSTYSIERRI--ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN- 143
I + II+ S R+ L + E+ + FV EE+L N
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--------QKFV---EEVLR--INY 91
Query: 144 GYILGQFEN----PANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN 199
+++ + P+ Y ++ND F V+ +LK +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYND----NQVF-----AKYNVSRLQPYLKLRQ 142
Query: 200 PNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVA--------MLDEV--ITVS 249
+ + P+++ +++G + G G + LDV M ++ + +
Sbjct: 143 ---ALLELRPAKNVLIDG-------VLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 250 SEEAIETSKLLALKEGLLVGISS 272
+ + ET +L + + LL I
Sbjct: 191 NCNSPET--VLEMLQKLLYQIDP 211
Score = 33.3 bits (75), Expect = 0.13
Identities = 44/345 (12%), Positives = 84/345 (24%), Gaps = 145/345 (42%)
Query: 30 CVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAA 89
++ L ++P +V + + G GKT + +
Sbjct: 136 PYLKLRQALLELRPAKNV---LIDGV------LGS---GKTWVA-------------LDV 170
Query: 90 SRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNR--------T 141
YK+ M +++ + E +L
Sbjct: 171 CLSYKVQCKMDF---------------KIFW----LNL-KNCNSPETVLEMLQKLLYQID 210
Query: 142 PNGYILGQFENPANPEIHYETTGPE-------------------IWNDSGGKVDAFIAGI 182
PN ++ +N ++ + E + N +AF +
Sbjct: 211 PNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAF--NL 264
Query: 183 G-----TGGT----VTGAGRFLKEKNPNIK--VYGIEPSESAVLNGGQPGKHLIQGIGAG 231
T T VT + ++ + P E L L++
Sbjct: 265 SCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--------LLK----- 309
Query: 232 VIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAK-RPEN-- 288
LD D E + T+ +S A +IR +N
Sbjct: 310 ----YLDCRPQDL-----PREVLTTNPRR---------LSI---IAESIRDGLATWDNWK 348
Query: 289 ---AGKLIVVI------FPSAGER--YLSTALFESIRHEVENMPI 322
KL +I A R + ++F + I
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP------PSAHI 387
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 45.2 bits (107), Expect = 1e-05
Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 21/179 (11%)
Query: 135 EEILNRTPNGYILGQ-FENPANPEIHY---ETTGPEIWNDSGGKVDAFIAGIGTGGTVTG 190
E + Y + + + + + G K D + TG T G
Sbjct: 146 ESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAG 205
Query: 191 AGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKH-------LIQGIGAGVIPPVLDVAMLD 243
+V G+ A Q + + +G DV + +
Sbjct: 206 MVVGFAADGRADRVIGV----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDE 261
Query: 244 EVI----TVSSEEAIETSKLLALKEGLLVG-ISSGAAAAAAIRVAKRPE-NAGKLIVVI 296
+ +E +E +L A EG+L + G + I + + E G ++
Sbjct: 262 RFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYA 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 6e-04
Identities = 33/154 (21%), Positives = 48/154 (31%), Gaps = 53/154 (34%)
Query: 191 AGRFLKEKNPNIKVYGI--------EPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAML 242
A K+ YG P + GG+ GK + + A + ++D +
Sbjct: 1649 ADNHFKDT------YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 243 DEVITVSSEEAIETSKLLALK--EGLL-------VGISSGAAAAAAIRVAK----RPEN- 288
E I +E E S + +GLL ++ AA K P +
Sbjct: 1703 TEKIF---KEINEHSTSYTFRSEKGLLSATQFTQPALT--LMEKAAFEDLKSKGLIPADA 1757
Query: 289 --AGKLIVVIFPSAGERYLSTAL--------FES 312
AG S GE Y AL ES
Sbjct: 1758 TFAGH-------SLGE-Y--AALASLADVMSIES 1781
Score = 37.7 bits (87), Expect = 0.005
Identities = 37/239 (15%), Positives = 71/239 (29%), Gaps = 69/239 (28%)
Query: 74 ELTSGNTGIGLAFIAASRGYKLIIIMPSTY--SIERRIILRALGAEVYLADPAVGFEGFV 131
LT G I Y + ++ ++ + E+ + F
Sbjct: 1671 NLTIHFGGEKGKRIRE--NY-----SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-- 1721
Query: 132 KKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND--SGGKV--DAFIAG--IG-- 183
+ +L+ T QF PA + + D S G + DA AG +G
Sbjct: 1722 --EKGLLSAT-------QFTQPA---LT--LMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 184 -----TGG---------TVTGAGRFLKEKNP-------NIKVYGIEPSESAVLNGGQPGK 222
V G ++ P N + I P A + +
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 223 HLIQGIGAGV----------IPP---VL--DVAMLDEVITVSSEEAIETSKLLALKEGL 266
++++ +G + V D+ LD V V + ++ ++ L++ L
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL 1886
Score = 37.7 bits (87), Expect = 0.005
Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 60/185 (32%)
Query: 42 QPCSSVKDRIAYSMIKDAEDKGLITPGKTV----LIE---LTSGNTGIGLAF-----IAA 89
QP ++ + + +D + KGLI T L E L S + ++ +
Sbjct: 1733 QPALTL---MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL-ADV-MSIESLVEVVF 1787
Query: 90 SRGYKLIIIMP------STYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN 143
RG + + +P S Y + I + + A+ + V E + RT
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGM---IAINPGRVAASFSQEAL--QYVV---ERVGKRT-- 1837
Query: 144 GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG---AGRFLKE-KN 199
G+++ E N Y N + A G + L K
Sbjct: 1838 GWLV---E-IVN----Y--------NVENQQY--VAA-----GDLRALDTVTNVLNFIKL 1874
Query: 200 PNIKV 204
I +
Sbjct: 1875 QKIDI 1879
Score = 35.0 bits (80), Expect = 0.032
Identities = 59/314 (18%), Positives = 89/314 (28%), Gaps = 131/314 (41%)
Query: 100 PSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENP--ANPE 157
P+T E ++ + LG Y++ V + +++LN L +FEN +
Sbjct: 54 PTT-PAE--LVGKFLG---YVSSLVE--PSKVGQFDQVLN-----LCLTEFENCYLEGND 100
Query: 158 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVY----------GI 207
IH A A + T L + IK Y
Sbjct: 101 IH-----------------ALAAKLLQENDTT-----LVKTKELIKNYITARIMAKRPFD 138
Query: 208 EPSESAVLN-------------GGQPG--------------------KHLIQGIGA---- 230
+ S SA+ GGQ G LI+
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 231 ---------GVIPPVLDV-AMLDEVITVSSEEA-------------------IETSKLLA 261
V L++ L+ ++ + T+KLL
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 262 LKEGLLVGISSGAA-------AAAAIRVAKRPE----NAGKLIVVIFPSAGER----YLS 306
G L GA A AI E + K I V+F G R Y +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-FIGVRCYEAYPN 316
Query: 307 TALFESIRHE-VEN 319
T+L SI + +EN
Sbjct: 317 TSLPPSILEDSLEN 330
Score = 34.3 bits (78), Expect = 0.055
Identities = 48/306 (15%), Positives = 79/306 (25%), Gaps = 118/306 (38%)
Query: 63 GLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRAL------GA 116
G TPG+ L G TG + A + I ++ + +A+ G
Sbjct: 257 GF-TPGE--LRSYLKGATGHSQGLVTA-----VAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 117 EVYLADPAVGF-----EGFVKKGEEILNRTP----NGYILGQFE------N---PANPEI 158
Y A P E ++ E + +P + Q + N PA ++
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGV--PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 159 HYE-TTGPEIWNDSGGKVDAFIAGIGTGGTVTG--------AGRFLKEKNPNIKVYGIEP 209
G + V+G K K P+ G++
Sbjct: 367 EISLVNGA----------KNLV--------VSGPPQSLYGLNLTLRKAKAPS----GLDQ 404
Query: 210 SESAVLNGGQPGKHLIQGIGAGVIP-----PVLDVAMLDEVITV---SS--EEAIETSKL 259
S IP L + S A +
Sbjct: 405 SR---------------------IPFSERKLKFSNRFL--PVASPFHSHLLVPASDL--- 438
Query: 260 LALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE--RYLSTALFESIRHEV 317
+ + L+ S A I P V G R LS ++ E I +
Sbjct: 439 --INKDLVKNNVSFNAKDIQI-----P--------VYDTFDGSDLRVLSGSISERIVDCI 483
Query: 318 ENMPID 323
+P+
Sbjct: 484 IRLPVK 489
Score = 28.9 bits (64), Expect = 3.1
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 217 GGQPG-----KHLIQGIGAGVIPP-VLDVAMLDEV 245
GG G G G VI LD+ D+
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 39.0 bits (91), Expect = 0.002
Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 21/194 (10%)
Query: 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIIL 111
AY M+ + + G VLI SG G + G + + S ++ +
Sbjct: 206 AYRMLVS-DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAV 261
Query: 112 RALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGQFENPANPEIHYETTGPEIWND 170
RALG ++ + +G + + T L + P+I +E TG +
Sbjct: 262 RALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGL 321
Query: 171 S------GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHL 224
S GG V G +G T R+L K K+ G + +
Sbjct: 322 SVIVARRGGTV--VTCGSSSGYLHTFDNRYLWMK--LKKIVGSHGANHEEQ------QAT 371
Query: 225 IQGIGAGVIPPVLD 238
+ +G + P +
Sbjct: 372 NRLFESGAVVPAMS 385
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 35.6 bits (83), Expect = 0.016
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 44/157 (28%)
Query: 176 DAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG----- 221
DA IA +G G G F+ + ++ + G+EP A L G+ G
Sbjct: 224 DAVIACVGGGSNAIGMFADFIND--TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGM 281
Query: 222 -KHLIQ----------GIGAGVIPPVLDV-------AMLDEV-----ITVSSEEAIETSK 258
++Q I AG LD A L+ + ++++ +EA+E K
Sbjct: 282 KAPMMQTADGQIEESYSISAG-----LDFPSVGPQHAYLNSIGRADYVSITDDEALEAFK 336
Query: 259 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 295
L EG++ + S A A A+++ + +L+VV
Sbjct: 337 TLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 35.1 bits (80), Expect = 0.022
Identities = 43/261 (16%), Positives = 72/261 (27%), Gaps = 37/261 (14%)
Query: 68 GKTVLIELTSG--NTGIGLAFIAASRGYKLIIIM----------PSTYSIERRIILRALG 115
T L+ + N +A +AA G K ++I Y+ I L +
Sbjct: 66 DYTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIM 125
Query: 116 AEVYLADPAVGFEGFVKKGEEIL----NRTPNGYI--LGQFENPANPE--IHYETTGPEI 167
G K L + Y G E+ + +
Sbjct: 126 GADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQ 185
Query: 168 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQG 227
+ G K D + TG T G + + V I + K
Sbjct: 186 EVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAI-----DASFTSEKTKEQTLR 240
Query: 228 I------GAGVIPPVLDVAMLDEVIT----VSSEEAIETSKLLALKEGLLV-GISSGAAA 276
I GV D + V +E IE + A +EG+L + G +
Sbjct: 241 IANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSM 300
Query: 277 AAAIR-VAKRPENAGKLIVVI 296
I + + G ++ +
Sbjct: 301 QGLIALIKEDYFKPGANVLYV 321
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 35.2 bits (81), Expect = 0.028
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 25/196 (12%)
Query: 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI--AASRGYKLIIIMPSTYSIERRI 109
AY + G+ G VLI SG G+G A + G I + S ++
Sbjct: 214 AYRQLVSRNGAGM-KQGDNVLIWGASG--GLGSYATQFALAGGANPICV---VSSPQKAE 267
Query: 110 ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIW 168
I RA+GAE + A G+ + + + G + + + +I +E G E +
Sbjct: 268 ICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETF 327
Query: 169 NDS------GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGK 222
S GG + +G R+L ++ G S N +
Sbjct: 328 GASVFVTRKGGTIT--TCASTSGYMHEYDNRYLWMS--LKRIIG-----SHFANYRE-AW 377
Query: 223 HLIQGIGAGVIPPVLD 238
+ I G I P L
Sbjct: 378 EANRLIAKGRIHPTLS 393
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 34.9 bits (81), Expect = 0.028
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 35/157 (22%)
Query: 172 GGKVDAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIE--------PSESAVLNGGQPG- 221
G DA IA +G G G F K+ G+E +A + G+ G
Sbjct: 243 GRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGV 302
Query: 222 -----KHLIQGIGAGVIPPVLDV-AMLD-----------------EVITVSSEEAIETSK 258
+L+ G I P V A LD E +V+ EEA+E K
Sbjct: 303 LHGSYMYLLYD-HDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEGFK 361
Query: 259 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 295
LLA EG++ + S A A A +V + +++V+
Sbjct: 362 LLARLEGIIPALESAHAIAYAAKVVPE-MDKDQVVVI 397
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 34.1 bits (78), Expect = 0.045
Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 28/131 (21%)
Query: 190 GAGRFLKE-KNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPV----LDVAMLDE 244
G G FL+ K I+ G++ +E + + ++++ + + LD M+
Sbjct: 51 GRGEFLELCKEEGIESIGVDINEDMI-KFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISH 109
Query: 245 VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERY 304
+ E ++ +L L + + IV+ P+ Y
Sbjct: 110 FV-----EHLDPERLFEL-----------------LSLCYSKMKYSSYIVIESPNPTSLY 147
Query: 305 LSTALFESIRH 315
+ H
Sbjct: 148 SLINFYIDPTH 158
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 33.7 bits (78), Expect = 0.075
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 37/153 (24%)
Query: 176 DAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG----- 221
D +A +G G G F+ + +K+ G+E SA LN GQ G
Sbjct: 220 DVIVACVGGGSNAMGIFYPFVND--KKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGM 277
Query: 222 -KHLIQGIGAGVIPPVLDV-AMLD-----------------EVITVSSEEAIETSKLLAL 262
+ +Q G I P + LD E +TV+ EEA++ L+
Sbjct: 278 LSYFLQD-EEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSR 336
Query: 263 KEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 295
EG++ + S A A A+++AK + ++I+V
Sbjct: 337 TEGIIPALESAHAVAYAMKLAKEM-SRDEIIIV 368
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 33.0 bits (75), Expect = 0.099
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 66 TPGKTVLIELTSGNTGIGLAFIA---ASRGYKLII 97
T + ++ T GN GIG I +S G +++
Sbjct: 10 TKRRCAVV--TGGNKGIGFE-ICKQLSSNGIMVVL 41
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 32.6 bits (75), Expect = 0.14
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 37/157 (23%)
Query: 172 GGKVDAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG- 221
G DA +A +G G G FL + P +++ G E + +A G PG
Sbjct: 247 GRLPDAVVACVGGGSNAIGIFHAFLDD--PGVRLVGFEAAGDGVETGRHAATFTAGSPGA 304
Query: 222 -----KHLIQGIGAGVIPPVLDV-AMLD-----------------EVITVSSEEAIETSK 258
+L+Q G + A LD + ++ EA++
Sbjct: 305 FHGSFSYLLQD-EDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFG 363
Query: 259 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 295
LL EG++ I S A A A+++ G +IVV
Sbjct: 364 LLCRMEGIIPAIESAHAVAGALKLGVE-LGRGAVIVV 399
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 30.9 bits (70), Expect = 0.44
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 182 IGTGGTVTGAGRFLKE-KNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVL--- 237
IG G K +V GIE A + H++ G + P
Sbjct: 39 IGCSS-----GALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQ 93
Query: 238 -DVAMLDEVI 246
D + +V+
Sbjct: 94 FDCVIFGDVL 103
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 30.3 bits (68), Expect = 0.88
Identities = 41/274 (14%), Positives = 77/274 (28%), Gaps = 40/274 (14%)
Query: 28 DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI 87
+G A + P + A M++ + ++ + N G L I
Sbjct: 143 EGATPADGASS-FVNPLT------ALGMVETMR----LEGHSALVHTAAASNLGQMLNQI 191
Query: 88 AASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL 147
G KL+ I E+ +L+A GA + F++ E L T
Sbjct: 192 CLKDGIKLVNI---VRKQEQADLLKAQGAVHVCNAAS---PTFMQDLTEALVST------ 239
Query: 148 GQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 207
I ++ TG + R+ + + +YG
Sbjct: 240 -------GATIAFDATGGGKLGGQILTC----MEAALNKSAREYSRYGSTTHKQVYLYGG 288
Query: 208 EPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLL 267
+ N + G+G ++ P L + + E A
Sbjct: 289 LDTSPTEFN---RNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKTTFASHYSKE 345
Query: 268 VGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAG 301
+ + + I V + K +I P+ G
Sbjct: 346 ISL-AEVLDLDMIAVYNKRATGEK--YLINPNKG 376
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 29.1 bits (66), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 68 GKTVLIELTSGNTGIGL--AFIAASRGYKLII 97
+TV+I T N+G+G A A RG +I+
Sbjct: 16 QRTVVI--TGANSGLGAVTARELARRGATVIM 45
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 28.7 bits (64), Expect = 2.2
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 190 GAGRFLKE-KNPNIKVYGIEPSESAV 214
G F + + +E SE A+
Sbjct: 52 FKGDFTSRLQEHFNDITCVEASEEAI 77
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 28.5 bits (63), Expect = 2.3
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 189 TGAGRFLKE---KNPNIKVYGIEPSESAVLN 216
TG G+ + +NP+ V ++ +S +
Sbjct: 36 TGDGKHPYKVARQNPSRLVVALDADKSRMEK 66
>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat
protein, crystal P nanotechnology, viral jelly roll,
viral protein; 3.90A {Fowl adenovirus 1}
Length = 942
Score = 28.7 bits (64), Expect = 2.9
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 139 NRTPNGYILGQFENPANPEIHYE-TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKE 197
N+T N + + + GP + +A + GRF K
Sbjct: 159 NQTRNDKTATLQQVNSISGVVPNVNLGPGLSQ---------LASRADVDNIGVVGRFAKV 209
Query: 198 KNPNIK-VYG 206
+ +K YG
Sbjct: 210 DSAGVKQAYG 219
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 28.3 bits (63), Expect = 3.0
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 69 KTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLAD 122
T+L G T L+ A +G+++I ++ + ++ +RA GAE L
Sbjct: 6 GTLLS-FGHGYTARVLSRALAPQGWRIIG---TSRNPDQMEAIRASGAEPLLWP 55
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 28.3 bits (64), Expect = 3.0
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 69 KTVLIELTSGNTGIGLAF--IAASRGYKLII 97
++I T ++G+G + + G +
Sbjct: 2 SLIVI--TGASSGLGAELAKLYDAEGKATYL 30
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 28.4 bits (62), Expect = 3.3
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 20/107 (18%)
Query: 106 ERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 165
E RI L P+V + F + N ++ E
Sbjct: 94 EDRIHFDGLKGAA--RTPSVVTDLFDPETNPNANGY-------------LDKLAQELGRK 138
Query: 166 EIWNDSGGKVDAFIAGIGTGGTVTGAG-----RFLKEKNPNIKVYGI 207
+ VD F+ +G GG V + ++E+ V +
Sbjct: 139 FTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSML 185
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 27.8 bits (62), Expect = 4.2
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 166 EIWNDSGGKVDAFIAG-----IGTGGTVTGA-GRFLKEKNPNIKVYGIEPSES 212
+ + S +G G TG FL EK P ++ SE
Sbjct: 30 DFYGVSVSIASVDTENPDILDLGAG---TGLLSAFLMEKYPEATFTLVDMSEK 79
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring,
membrane rotor, sodium transporter, H ION transport,
hydrolase, transmembrane; HET: LHG UMQ; 2.1A
{Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Length = 156
Score = 27.1 bits (60), Expect = 5.5
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 265 GLLVGISSGAAAAAAIR-VAKRPENAGKLIVV-IFPSA 300
GL GI+ G AAA I+ +AK+PE+A K I+
Sbjct: 103 GLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVET 140
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 27.3 bits (61), Expect = 5.7
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 22/56 (39%)
Query: 66 TPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLA 121
+ L+ T GN GIGLA I R + R +V L
Sbjct: 2 SGIHVALV--TGGNKGIGLA-IV-------------------RDLCRLFSGDVVLT 35
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Length = 307
Score = 27.5 bits (62), Expect = 6.0
Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 27/159 (16%)
Query: 172 GGKVDAFIAGIGTGG------TVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLI 225
G V AG + G + L ++ EP+ + ++ H+
Sbjct: 28 LGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAEDALYGHRLAEPTAALIVGLAGDYSHIA 87
Query: 226 QG---IGAGVIPPV---LDVAMLDEVITVSSEE----------AIETSKLLALKEGLLVG 269
V+P V LDV +L +V + + AI+ K K+ +
Sbjct: 88 APATTDAKNVMPRVAALLDVMVLSDVSAILDADTFERPIYAGNAIQVVKSKDAKKVFTIR 147
Query: 270 ISS----GAAAAAAIRVAKRPENAGKLIVVIFP-SAGER 303
+S G A + + G V + +R
Sbjct: 148 TASFDAAGEGGTAPVTETAAAADPGLSSWVADEVAESDR 186
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 27.7 bits (62), Expect = 6.5
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 192 GRFLKE-KNPNIKVYGIEPSES 212
G L+ + ++ G EPS
Sbjct: 119 GIMLRTIQEAGVRHLGFEPSSG 140
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 27.6 bits (62), Expect = 6.7
Identities = 33/148 (22%), Positives = 50/148 (33%), Gaps = 25/148 (16%)
Query: 61 DKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYL 120
D I G TV I L G G+ +A G +I+ ST +R + +GA +
Sbjct: 176 DLSGIKAGSTVAI-LGGGVIGLLTVQLARLAGATTVIL--STRQATKRRLAEEVGATATV 232
Query: 121 ADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTG-PEIWNDSGGKVDAFI 179
DP+ V+ + P G ++ E G E S
Sbjct: 233 -DPSA--GDVVEAIAGPVGLVPGG-----------VDVVIECAGVAETVKQS-------T 271
Query: 180 AGIGTGGTVTGAGRFLKEKNPNIKVYGI 207
GGTV G + + I+ + I
Sbjct: 272 RLAKAGGTVVILGVLPQGEKVEIEPFDI 299
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 27.2 bits (61), Expect = 8.7
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 52 AYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFI--AASRGYKLIIIMPSTYSIERRI 109
A+ M+ D K + PG VL+ G+ +A I A G ++I S + R
Sbjct: 154 AWQMVVD---KLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIATAGSEDKLRR-- 206
Query: 110 ILRALGAEV 118
+ALGA+
Sbjct: 207 -AKALGADE 214
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 26.7 bits (59), Expect = 8.9
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 177 AFIAGIGTGGTV----TGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQG 227
+ + G G GRF G+EPSE + G +++G
Sbjct: 40 QAVKCLLPEGRGVEIGVGTGRFAVPLK---IKIGVEPSERMAEIARKRGVFVLKG 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 9.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 13/38 (34%)
Query: 195 LKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGV 232
LK+ ++K+Y +SA P L I A +
Sbjct: 22 LKKLQASLKLY--AD-DSA------PA--L--AIKATM 46
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 26.5 bits (59), Expect = 9.7
Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 8/38 (21%)
Query: 182 IGTGGTVTGAGRFLKE---KNPNIKVYGIEPSESAVLN 216
IG G G L P GIE V
Sbjct: 41 IGFGM-----GASLVAMAKDRPEQDFLGIEVHSPGVGA 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.387
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,286,568
Number of extensions: 359017
Number of successful extensions: 1286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 113
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)