BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020632
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F +F + A A
Sbjct: 22 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAK 79
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 80 NALNGIRFDPENPQTLRLEFAKANTKMAKSK 110
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ + + QP F +F + A A
Sbjct: 28 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAK 85
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 86 NALNGIRFDPENPQTLRLEFAKANTKMAKSK 116
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 19 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAK 76
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 77 NALNGIRFDPENPQTLRLEFAKANTKMAKSK 107
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNKG-------STLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 9/89 (10%)
Query: 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127
VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F ++ A A A
Sbjct: 19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKNA 76
Query: 128 LN-------KGSTLYIDLAKSNSRSKRSR 149
LN TL ++ AK+N++ +++
Sbjct: 77 LNGIRFDPENPQTLRLEFAKANTKMAKNK 105
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ---PFAFAVFSDQQSAL 122
+EVRTLFV+GLP D KPRE+Y LFR + GYE S L+ +++N + P F F + A
Sbjct: 448 EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAE 507
Query: 123 GAMYAL-------NKGSTLYIDLAKSNSRSKRSR 149
A L + T+ ++ AKSN++ + +
Sbjct: 508 AAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 541
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 217 NNSSAPSGPKNVT--PCATLFVANLGPTCTEQELTQVFS 253
NN+S P P+ PC+TLFVANLG +E EL +VFS
Sbjct: 687 NNASHPGNPQIAANAPCSTLFVANLGQFVSEHELKEVFS 725
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 21/118 (17%)
Query: 29 PPGGVVAPPTQPYMPQPQPQPPPLGSYSASFPAYGSYDEVRTLFVAGLPEDVKPREIYNL 88
PPG + P Q MP Q PP S + P + LF+ LPE+ + L
Sbjct: 181 PPGAM---PPQQLMPG---QMPPAQPLSENPPNH-------ILFLTNLPEETNELMLSML 227
Query: 89 FREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAKS 141
F +FPG++ L + AF F ++ A A AL + + + I AK
Sbjct: 228 FNQFPGFKEVRLVPGRHD---IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,481,055
Number of Sequences: 539616
Number of extensions: 7448445
Number of successful extensions: 135018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 1033
Number of HSP's that attempted gapping in prelim test: 63979
Number of HSP's gapped (non-prelim): 33682
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)