Query 020632
Match_columns 323
No_of_seqs 297 out of 1938
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.5E-31 3.2E-36 245.0 19.8 163 65-311 104-278 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.7E-29 5.9E-34 233.4 25.8 239 68-309 89-350 (352)
3 KOG0117 Heterogeneous nuclear 100.0 3.1E-30 6.6E-35 231.4 16.1 230 69-315 84-338 (506)
4 TIGR01645 half-pint poly-U bin 100.0 2.5E-29 5.4E-34 242.0 19.8 168 67-309 106-285 (612)
5 KOG0148 Apoptosis-promoting RN 100.0 1.1E-29 2.4E-34 214.5 14.6 170 68-309 62-239 (321)
6 KOG1457 RNA binding protein (c 100.0 8.8E-29 1.9E-33 203.7 18.8 232 64-303 30-284 (284)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.1E-28 2.4E-33 229.3 19.6 158 68-309 3-172 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.6E-28 7.8E-33 234.1 20.5 164 69-308 3-174 (481)
9 KOG0144 RNA-binding protein CU 100.0 1E-28 2.2E-33 220.7 15.3 163 64-308 30-206 (510)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.6E-27 1.2E-31 225.8 27.6 190 67-308 274-480 (481)
11 TIGR01622 SF-CC1 splicing fact 100.0 6.3E-27 1.4E-31 225.0 20.1 170 65-308 86-266 (457)
12 TIGR01628 PABP-1234 polyadenyl 99.9 3.8E-27 8.2E-32 231.9 18.3 155 70-308 2-167 (562)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 6.9E-27 1.5E-31 224.8 18.4 159 67-310 137-309 (578)
14 KOG0145 RNA-binding protein EL 99.9 8.6E-27 1.9E-31 196.0 15.8 167 62-312 35-213 (360)
15 KOG0131 Splicing factor 3b, su 99.9 7.5E-27 1.6E-31 186.8 12.7 162 65-311 6-180 (203)
16 TIGR01628 PABP-1234 polyadenyl 99.9 1.5E-26 3.3E-31 227.6 17.6 176 67-310 177-366 (562)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.1E-25 6.7E-30 216.0 24.4 182 65-308 172-375 (509)
18 KOG0145 RNA-binding protein EL 99.9 2.6E-25 5.7E-30 187.1 15.8 218 67-308 126-358 (360)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 8.6E-25 1.9E-29 210.4 18.1 150 68-309 58-223 (578)
20 KOG0109 RNA-binding protein LA 99.9 1.8E-25 3.8E-30 190.9 11.1 145 69-311 3-153 (346)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.6E-23 3.5E-28 204.0 23.2 183 66-306 293-500 (509)
22 KOG0127 Nucleolar protein fibr 99.9 1.2E-23 2.6E-28 193.1 19.9 232 68-306 117-376 (678)
23 TIGR01622 SF-CC1 splicing fact 99.9 3.5E-23 7.6E-28 199.0 24.0 232 68-307 186-447 (457)
24 KOG0127 Nucleolar protein fibr 99.9 4.2E-23 9.1E-28 189.6 15.9 180 69-308 6-196 (678)
25 KOG4206 Spliceosomal protein s 99.9 2.7E-22 5.9E-27 166.8 18.6 199 68-306 9-220 (221)
26 KOG0146 RNA-binding protein ET 99.9 1.7E-21 3.8E-26 164.7 15.6 239 67-309 18-366 (371)
27 KOG0144 RNA-binding protein CU 99.9 3.9E-21 8.5E-26 172.3 16.9 77 68-144 124-208 (510)
28 KOG0123 Polyadenylate-binding 99.9 3.6E-21 7.7E-26 177.5 15.2 144 69-308 2-153 (369)
29 KOG0124 Polypyrimidine tract-b 99.9 2.4E-21 5.2E-26 170.3 9.8 164 68-306 113-288 (544)
30 KOG0110 RNA-binding protein (R 99.9 4.9E-21 1.1E-25 181.2 12.4 163 69-308 516-693 (725)
31 KOG0148 Apoptosis-promoting RN 99.8 1.5E-20 3.2E-25 159.4 10.0 135 65-309 3-143 (321)
32 TIGR01645 half-pint poly-U bin 99.8 2E-17 4.3E-22 160.0 24.6 75 68-142 204-284 (612)
33 KOG4205 RNA-binding protein mu 99.8 6.7E-19 1.5E-23 157.2 12.1 162 67-308 5-176 (311)
34 KOG0123 Polyadenylate-binding 99.8 2.3E-18 5E-23 158.9 13.3 160 70-308 78-246 (369)
35 KOG0147 Transcriptional coacti 99.8 9.2E-19 2E-23 161.8 6.7 174 63-308 174-358 (549)
36 KOG0105 Alternative splicing f 99.8 8.3E-17 1.8E-21 129.5 16.5 166 68-294 6-177 (241)
37 KOG0110 RNA-binding protein (R 99.7 3.6E-16 7.7E-21 148.6 15.6 197 68-306 385-596 (725)
38 KOG1190 Polypyrimidine tract-b 99.7 1E-15 2.2E-20 136.9 17.3 187 68-308 297-491 (492)
39 KOG0147 Transcriptional coacti 99.7 2.6E-16 5.7E-21 145.7 13.6 218 69-305 279-525 (549)
40 PLN03134 glycine-rich RNA-bind 99.7 2.3E-16 4.9E-21 127.4 10.0 76 231-309 34-115 (144)
41 KOG1190 Polypyrimidine tract-b 99.7 3.2E-15 6.9E-20 133.7 17.4 215 67-308 149-373 (492)
42 PLN03134 glycine-rich RNA-bind 99.7 1.1E-15 2.4E-20 123.4 11.0 77 66-142 32-114 (144)
43 KOG0106 Alternative splicing f 99.6 6.7E-16 1.5E-20 130.0 8.0 159 69-304 2-167 (216)
44 KOG0125 Ataxin 2-binding prote 99.6 1.3E-14 2.8E-19 126.6 11.8 79 66-144 94-176 (376)
45 KOG4212 RNA-binding protein hn 99.6 1.8E-13 4E-18 123.5 19.1 218 66-305 42-291 (608)
46 TIGR01659 sex-lethal sex-letha 99.5 1.9E-14 4.2E-19 132.3 10.0 79 227-308 103-187 (346)
47 PF00076 RRM_1: RNA recognitio 99.5 1.2E-14 2.6E-19 102.4 6.5 65 234-301 1-70 (70)
48 KOG1456 Heterogeneous nuclear 99.5 2.1E-12 4.5E-17 114.7 21.8 230 67-311 119-366 (494)
49 PF00076 RRM_1: RNA recognitio 99.5 2.5E-14 5.5E-19 100.7 7.5 65 71-135 1-70 (70)
50 KOG0121 Nuclear cap-binding pr 99.5 2.1E-14 4.5E-19 109.1 7.2 72 68-139 36-113 (153)
51 KOG1548 Transcription elongati 99.5 2.4E-13 5.1E-18 119.6 14.2 191 68-306 134-350 (382)
52 PLN03120 nucleic acid binding 99.5 4.8E-14 1E-18 122.0 9.6 74 231-307 4-79 (260)
53 KOG0149 Predicted RNA-binding 99.5 3E-14 6.5E-19 119.3 6.3 76 66-141 10-90 (247)
54 KOG0107 Alternative splicing f 99.5 7.8E-14 1.7E-18 111.7 8.0 76 231-310 10-87 (195)
55 KOG0125 Ataxin 2-binding prote 99.5 1.4E-13 3E-18 120.3 10.2 79 231-312 96-178 (376)
56 PLN03120 nucleic acid binding 99.5 2.5E-13 5.5E-18 117.5 9.9 72 68-141 4-79 (260)
57 KOG0114 Predicted RNA-binding 99.5 2.2E-13 4.7E-18 99.7 7.7 73 231-306 18-93 (124)
58 PLN03213 repressor of silencin 99.5 1.8E-13 4E-18 125.2 9.1 75 231-308 10-88 (759)
59 COG0724 RNA-binding proteins ( 99.5 1.1E-12 2.3E-17 116.6 14.1 139 68-265 115-259 (306)
60 KOG0122 Translation initiation 99.4 3.8E-13 8.3E-18 113.2 8.9 78 65-142 186-269 (270)
61 KOG0124 Polypyrimidine tract-b 99.4 1E-11 2.2E-16 110.0 17.9 74 68-141 210-289 (544)
62 KOG4211 Splicing factor hnRNP- 99.4 4.8E-12 1E-16 116.3 15.3 162 67-304 9-178 (510)
63 KOG0105 Alternative splicing f 99.4 3.8E-13 8.3E-18 108.5 6.7 75 231-308 6-83 (241)
64 KOG0122 Translation initiation 99.4 6.5E-13 1.4E-17 111.8 7.6 76 230-308 188-269 (270)
65 PLN03213 repressor of silencin 99.4 1.1E-12 2.3E-17 120.3 9.1 76 66-143 8-89 (759)
66 PLN03121 nucleic acid binding 99.4 1.6E-12 3.5E-17 110.8 9.2 73 231-306 5-79 (243)
67 KOG0121 Nuclear cap-binding pr 99.4 9.3E-13 2E-17 100.1 6.3 72 231-305 36-113 (153)
68 KOG0107 Alternative splicing f 99.4 1.3E-12 2.9E-17 104.7 7.4 74 68-144 10-87 (195)
69 PF14259 RRM_6: RNA recognitio 99.4 1.5E-12 3.2E-17 91.9 6.8 65 234-301 1-70 (70)
70 PF14259 RRM_6: RNA recognitio 99.4 2.1E-12 4.5E-17 91.2 7.1 64 71-134 1-69 (70)
71 KOG1456 Heterogeneous nuclear 99.4 7E-12 1.5E-16 111.3 11.6 157 69-308 32-199 (494)
72 KOG4212 RNA-binding protein hn 99.3 9.5E-11 2.1E-15 106.2 18.4 72 230-305 535-608 (608)
73 KOG0114 Predicted RNA-binding 99.3 9.1E-12 2E-16 91.3 9.4 76 66-142 16-95 (124)
74 KOG4207 Predicted splicing fac 99.3 1.7E-12 3.7E-17 106.6 6.2 78 230-310 12-95 (256)
75 smart00362 RRM_2 RNA recogniti 99.3 5.7E-12 1.2E-16 88.3 7.9 67 233-302 1-71 (72)
76 KOG0109 RNA-binding protein LA 99.3 1.8E-12 3.9E-17 111.6 5.9 70 233-309 4-75 (346)
77 KOG4206 Spliceosomal protein s 99.3 4.4E-12 9.5E-17 106.1 8.0 80 229-311 7-93 (221)
78 smart00362 RRM_2 RNA recogniti 99.3 1E-11 2.2E-16 87.0 8.4 67 70-136 1-71 (72)
79 KOG0113 U1 small nuclear ribon 99.3 8.4E-12 1.8E-16 107.9 9.4 77 229-308 99-181 (335)
80 PLN03121 nucleic acid binding 99.3 9.1E-12 2E-16 106.2 9.5 72 68-140 5-79 (243)
81 KOG0120 Splicing factor U2AF, 99.3 9.4E-12 2E-16 117.0 10.4 178 66-305 287-489 (500)
82 KOG0111 Cyclophilin-type pepti 99.3 1.5E-12 3.2E-17 107.9 4.3 76 231-309 10-91 (298)
83 KOG0126 Predicted RNA-binding 99.3 6.4E-13 1.4E-17 107.0 1.8 72 231-305 35-112 (219)
84 KOG0111 Cyclophilin-type pepti 99.3 2E-12 4.3E-17 107.1 4.8 77 67-143 9-91 (298)
85 PF13893 RRM_5: RNA recognitio 99.3 9.4E-12 2E-16 83.8 6.9 54 248-305 1-56 (56)
86 KOG0113 U1 small nuclear ribon 99.3 1.5E-11 3.2E-16 106.4 9.7 82 59-140 92-179 (335)
87 KOG0149 Predicted RNA-binding 99.3 5.4E-12 1.2E-16 105.9 6.4 74 231-307 12-90 (247)
88 KOG0130 RNA-binding protein RB 99.3 1.2E-11 2.7E-16 94.9 6.6 76 230-308 71-152 (170)
89 KOG0112 Large RNA-binding prot 99.2 8.1E-12 1.7E-16 121.9 6.0 171 60-314 364-537 (975)
90 cd00590 RRM RRM (RNA recogniti 99.2 4.6E-11 9.9E-16 84.1 8.4 69 233-304 1-74 (74)
91 KOG0108 mRNA cleavage and poly 99.2 3E-11 6.5E-16 112.9 9.2 75 69-143 19-99 (435)
92 smart00360 RRM RNA recognition 99.2 3E-11 6.4E-16 84.2 7.0 65 236-303 1-71 (71)
93 KOG4207 Predicted splicing fac 99.2 1.8E-11 4E-16 100.6 6.7 77 66-142 11-93 (256)
94 KOG0131 Splicing factor 3b, su 99.2 1.5E-11 3.2E-16 99.3 5.5 73 231-306 9-87 (203)
95 KOG0117 Heterogeneous nuclear 99.2 3.2E-11 7E-16 109.5 7.8 77 64-146 255-335 (506)
96 cd00590 RRM RRM (RNA recogniti 99.2 1.8E-10 3.9E-15 81.0 8.9 69 70-138 1-74 (74)
97 smart00360 RRM RNA recognition 99.2 1.1E-10 2.3E-15 81.4 7.5 64 73-136 1-70 (71)
98 KOG0129 Predicted RNA-binding 99.2 4E-10 8.7E-15 104.5 12.9 154 68-282 259-426 (520)
99 KOG0108 mRNA cleavage and poly 99.2 4.9E-11 1.1E-15 111.5 7.0 76 232-310 19-100 (435)
100 COG0724 RNA-binding proteins ( 99.2 1.1E-10 2.3E-15 103.7 8.8 73 231-306 115-193 (306)
101 KOG0126 Predicted RNA-binding 99.2 3.5E-12 7.6E-17 102.8 -0.8 75 66-140 33-113 (219)
102 KOG0120 Splicing factor U2AF, 99.1 2.1E-10 4.5E-15 108.0 10.3 176 66-308 173-369 (500)
103 KOG0130 RNA-binding protein RB 99.1 1.5E-10 3.3E-15 89.0 6.8 77 67-143 71-153 (170)
104 PF13893 RRM_5: RNA recognitio 99.1 2.7E-10 5.9E-15 76.6 7.3 52 85-139 1-56 (56)
105 KOG4660 Protein Mei2, essentia 99.1 3.5E-10 7.6E-15 105.7 10.2 169 68-307 75-249 (549)
106 KOG0132 RNA polymerase II C-te 99.1 2.7E-10 5.9E-15 109.8 7.8 71 68-142 421-495 (894)
107 KOG1457 RNA binding protein (c 99.1 1E-09 2.2E-14 91.5 9.9 85 230-314 33-124 (284)
108 KOG0415 Predicted peptidyl pro 99.0 2.3E-10 4.9E-15 101.2 5.4 80 228-310 236-321 (479)
109 KOG0153 Predicted RNA-binding 99.0 7.1E-10 1.5E-14 98.0 7.2 79 224-307 221-302 (377)
110 KOG4454 RNA binding protein (R 99.0 9.5E-11 2.1E-15 97.3 1.6 117 68-280 9-136 (267)
111 KOG0132 RNA polymerase II C-te 99.0 6.8E-10 1.5E-14 107.1 6.7 74 230-308 420-495 (894)
112 KOG0146 RNA-binding protein ET 98.9 1.5E-09 3.3E-14 92.7 6.0 77 65-141 282-364 (371)
113 KOG0226 RNA-binding proteins [ 98.9 2.5E-09 5.4E-14 90.9 7.0 75 231-308 190-270 (290)
114 KOG0153 Predicted RNA-binding 98.9 3.1E-09 6.8E-14 94.0 7.7 73 65-141 225-302 (377)
115 smart00361 RRM_1 RNA recogniti 98.9 3E-09 6.6E-14 75.0 5.9 55 245-302 2-69 (70)
116 smart00361 RRM_1 RNA recogniti 98.9 5.8E-09 1.3E-13 73.5 6.9 55 82-136 2-69 (70)
117 KOG4208 Nucleolar RNA-binding 98.9 4.8E-09 1E-13 86.7 6.8 73 230-305 48-127 (214)
118 KOG0128 RNA-binding protein SA 98.8 6.5E-10 1.4E-14 108.4 -0.2 141 67-306 666-813 (881)
119 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.7E-13 95.4 7.1 75 68-142 405-485 (940)
120 KOG4661 Hsp27-ERE-TATA-binding 98.8 1E-08 2.2E-13 96.0 6.2 81 231-314 405-491 (940)
121 KOG0415 Predicted peptidyl pro 98.8 1.3E-08 2.9E-13 90.2 6.0 77 68-144 239-321 (479)
122 KOG4208 Nucleolar RNA-binding 98.8 2.6E-08 5.6E-13 82.4 7.3 75 68-142 49-130 (214)
123 KOG4210 Nuclear localization s 98.7 2.1E-08 4.5E-13 89.8 5.8 165 67-308 87-264 (285)
124 KOG0151 Predicted splicing reg 98.7 5.3E-08 1.2E-12 93.4 8.4 78 228-308 171-257 (877)
125 KOG0116 RasGAP SH3 binding pro 98.7 9.7E-08 2.1E-12 89.1 9.7 77 65-141 285-366 (419)
126 KOG0106 Alternative splicing f 98.7 1.9E-08 4.1E-13 85.2 4.4 69 233-308 3-73 (216)
127 KOG4211 Splicing factor hnRNP- 98.6 6.3E-06 1.4E-10 76.6 17.6 72 68-139 103-179 (510)
128 KOG0533 RRM motif-containing p 98.6 3.9E-07 8.4E-12 78.9 9.1 79 68-146 83-166 (243)
129 KOG4307 RNA binding protein RB 98.5 5.6E-06 1.2E-10 79.7 17.5 188 69-304 312-510 (944)
130 KOG0116 RasGAP SH3 binding pro 98.5 2.1E-07 4.7E-12 86.8 7.3 75 231-308 288-367 (419)
131 KOG4660 Protein Mei2, essentia 98.5 5.7E-08 1.2E-12 91.2 3.3 68 230-301 74-143 (549)
132 PF04059 RRM_2: RNA recognitio 98.4 1.3E-06 2.7E-11 65.1 8.3 74 69-142 2-87 (97)
133 KOG1365 RNA-binding protein Fu 98.4 4.8E-07 1E-11 81.3 7.0 168 69-292 162-349 (508)
134 PF04059 RRM_2: RNA recognitio 98.4 1.2E-06 2.5E-11 65.3 7.6 77 232-308 2-87 (97)
135 KOG4205 RNA-binding protein mu 98.4 3.1E-07 6.8E-12 82.6 4.8 77 68-144 97-178 (311)
136 KOG0533 RRM motif-containing p 98.4 1E-06 2.3E-11 76.3 7.8 75 231-308 83-162 (243)
137 KOG2193 IGF-II mRNA-binding pr 98.4 2.9E-08 6.2E-13 90.0 -2.0 145 69-305 2-154 (584)
138 KOG4454 RNA binding protein (R 98.4 2.2E-07 4.7E-12 77.6 2.5 72 231-305 9-84 (267)
139 KOG4676 Splicing factor, argin 98.3 6.9E-07 1.5E-11 80.5 4.4 196 69-292 8-213 (479)
140 KOG0151 Predicted splicing reg 98.3 1.7E-06 3.6E-11 83.4 6.6 77 65-141 171-256 (877)
141 KOG4209 Splicing factor RNPS1, 98.2 3.3E-06 7.2E-11 73.2 5.9 77 65-142 98-180 (231)
142 PF11608 Limkain-b1: Limkain b 98.2 1E-05 2.2E-10 57.6 7.0 68 232-307 3-76 (90)
143 KOG1548 Transcription elongati 98.1 1.2E-05 2.6E-10 71.6 7.1 75 231-308 134-221 (382)
144 KOG4209 Splicing factor RNPS1, 98.0 5.5E-06 1.2E-10 71.9 4.9 75 231-308 101-180 (231)
145 PF11608 Limkain-b1: Limkain b 98.0 3.8E-05 8.2E-10 54.7 7.9 65 69-141 3-76 (90)
146 KOG0226 RNA-binding proteins [ 98.0 6.3E-06 1.4E-10 70.5 4.6 70 68-137 190-265 (290)
147 PF08777 RRM_3: RNA binding mo 97.9 3.6E-05 7.8E-10 58.5 5.9 50 232-283 2-51 (105)
148 KOG1924 RhoA GTPase effector D 97.7 7.5E-05 1.6E-09 73.1 6.8 7 6-12 528-534 (1102)
149 KOG1365 RNA-binding protein Fu 97.6 0.0013 2.8E-08 59.7 12.4 151 65-283 57-220 (508)
150 PF08777 RRM_3: RNA binding mo 97.5 0.00026 5.7E-09 53.8 6.1 57 69-129 2-58 (105)
151 KOG4307 RNA binding protein RB 97.4 0.0012 2.7E-08 64.0 10.9 63 67-129 866-930 (944)
152 KOG1855 Predicted RNA-binding 97.4 0.0004 8.7E-09 63.8 6.4 59 230-288 230-306 (484)
153 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00062 1.3E-08 44.9 5.2 52 69-125 2-53 (53)
154 KOG2416 Acinus (induces apopto 97.2 0.00026 5.7E-09 67.4 3.4 82 224-307 437-521 (718)
155 COG5175 MOT2 Transcriptional r 97.2 0.00078 1.7E-08 60.1 5.9 75 231-308 114-203 (480)
156 PF08675 RNA_bind: RNA binding 97.1 0.0032 6.9E-08 45.0 7.3 61 69-136 10-70 (87)
157 COG5175 MOT2 Transcriptional r 97.1 0.0014 3E-08 58.5 6.5 75 68-142 114-203 (480)
158 KOG1995 Conserved Zn-finger pr 97.1 0.0013 2.8E-08 59.3 6.1 80 65-144 63-156 (351)
159 KOG1995 Conserved Zn-finger pr 97.0 0.00076 1.6E-08 60.8 4.5 78 229-309 64-155 (351)
160 KOG1924 RhoA GTPase effector D 97.0 0.0015 3.3E-08 64.3 6.7 7 75-81 609-615 (1102)
161 KOG4210 Nuclear localization s 97.0 0.00061 1.3E-08 61.2 3.3 72 69-141 185-263 (285)
162 KOG0128 RNA-binding protein SA 97.0 5.6E-05 1.2E-09 74.7 -3.7 149 68-289 571-730 (881)
163 KOG1855 Predicted RNA-binding 96.9 0.0014 3E-08 60.4 5.3 63 67-129 230-307 (484)
164 KOG0129 Predicted RNA-binding 96.9 0.0023 4.9E-08 60.4 6.9 63 66-128 368-433 (520)
165 KOG3152 TBP-binding protein, a 96.9 0.00021 4.6E-09 61.4 0.0 87 231-320 74-178 (278)
166 KOG0112 Large RNA-binding prot 96.9 0.00037 8.1E-09 69.4 1.4 86 226-314 367-459 (975)
167 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0029 6.3E-08 41.6 4.9 49 232-283 2-50 (53)
168 PF08952 DUF1866: Domain of un 96.6 0.012 2.5E-07 47.0 7.5 70 229-305 25-104 (146)
169 PF15023 DUF4523: Protein of u 96.6 0.013 2.8E-07 46.2 7.5 68 68-140 86-160 (166)
170 KOG4676 Splicing factor, argin 96.6 0.0029 6.3E-08 57.6 4.4 69 232-303 8-84 (479)
171 KOG2253 U1 snRNP complex, subu 96.6 0.0041 8.9E-08 60.3 5.7 62 69-137 41-106 (668)
172 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0083 1.8E-07 45.0 5.8 72 231-307 6-91 (100)
173 KOG4849 mRNA cleavage factor I 96.5 0.0061 1.3E-07 54.8 5.8 64 66-129 78-145 (498)
174 KOG2314 Translation initiation 96.5 0.0047 1E-07 58.8 5.2 71 231-303 58-139 (698)
175 PF10309 DUF2414: Protein of u 96.4 0.02 4.4E-07 38.7 6.7 53 69-128 6-62 (62)
176 KOG4849 mRNA cleavage factor I 96.4 0.0025 5.4E-08 57.2 2.9 76 231-308 80-163 (498)
177 KOG2314 Translation initiation 96.3 0.019 4.2E-07 54.8 8.4 72 67-138 57-140 (698)
178 KOG3152 TBP-binding protein, a 95.9 0.0048 1E-07 53.2 2.3 61 69-129 75-149 (278)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.024 5.1E-07 47.3 6.0 76 231-306 7-96 (176)
180 KOG2416 Acinus (induces apopto 95.7 0.016 3.5E-07 55.6 5.1 70 69-142 445-522 (718)
181 KOG0115 RNA-binding protein p5 95.5 0.033 7.1E-07 48.2 5.9 51 233-283 33-86 (275)
182 KOG1996 mRNA splicing factor [ 95.5 0.03 6.6E-07 49.3 5.7 73 230-305 280-364 (378)
183 KOG2202 U2 snRNP splicing fact 95.5 0.0085 1.8E-07 51.8 2.1 57 84-140 84-146 (260)
184 KOG0115 RNA-binding protein p5 95.4 0.019 4.1E-07 49.7 3.9 61 69-129 32-93 (275)
185 KOG2202 U2 snRNP splicing fact 95.3 0.0074 1.6E-07 52.2 1.2 57 246-305 83-145 (260)
186 PF08675 RNA_bind: RNA binding 95.2 0.11 2.4E-06 37.2 6.6 53 231-288 9-63 (87)
187 PF07576 BRAP2: BRCA1-associat 95.0 0.3 6.6E-06 37.3 9.2 75 231-305 13-92 (110)
188 KOG2193 IGF-II mRNA-binding pr 95.0 0.02 4.3E-07 52.9 3.0 70 233-308 3-76 (584)
189 KOG4574 RNA-binding protein (c 94.9 0.016 3.4E-07 57.8 2.4 75 231-308 298-374 (1007)
190 PF08952 DUF1866: Domain of un 94.6 0.19 4.2E-06 40.1 7.5 66 69-140 28-105 (146)
191 KOG2591 c-Mpl binding protein, 94.6 0.083 1.8E-06 50.5 6.1 65 68-137 175-247 (684)
192 PF05172 Nup35_RRM: Nup53/35/4 94.0 0.33 7.1E-06 36.4 7.2 61 68-129 6-75 (100)
193 PF07576 BRAP2: BRCA1-associat 93.5 1.2 2.7E-05 34.0 9.7 62 68-129 13-75 (110)
194 KOG1996 mRNA splicing factor [ 92.5 0.28 6E-06 43.4 5.4 58 83-140 301-365 (378)
195 PF04847 Calcipressin: Calcipr 92.0 0.47 1E-05 39.8 6.1 59 245-308 9-71 (184)
196 PF03880 DbpA: DbpA RNA bindin 91.5 0.95 2E-05 31.8 6.4 58 241-305 11-74 (74)
197 COG5178 PRP8 U5 snRNP spliceos 91.3 0.17 3.7E-06 52.5 3.2 35 67-101 71-105 (2365)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 91.2 0.31 6.7E-06 40.7 4.2 64 66-129 5-76 (176)
199 PF15023 DUF4523: Protein of u 91.0 0.81 1.8E-05 36.3 6.0 72 228-306 83-160 (166)
200 KOG4574 RNA-binding protein (c 90.7 0.9 2E-05 45.9 7.5 70 69-142 299-374 (1007)
201 KOG2068 MOT2 transcription fac 90.7 0.1 2.2E-06 47.1 0.9 75 231-308 77-163 (327)
202 PF10567 Nab6_mRNP_bdg: RNA-re 90.6 12 0.00027 33.4 14.3 80 62-141 9-107 (309)
203 KOG2591 c-Mpl binding protein, 90.3 0.65 1.4E-05 44.7 5.9 61 231-294 175-246 (684)
204 KOG0804 Cytoplasmic Zn-finger 90.3 1.3 2.8E-05 41.7 7.6 75 231-305 74-153 (493)
205 KOG2135 Proteins containing th 89.6 0.35 7.7E-06 45.6 3.5 73 231-308 372-446 (526)
206 KOG2068 MOT2 transcription fac 89.5 0.2 4.4E-06 45.2 1.7 75 68-142 77-163 (327)
207 KOG2253 U1 snRNP complex, subu 89.0 0.46 9.9E-06 46.6 3.9 68 229-304 38-107 (668)
208 PF04847 Calcipressin: Calcipr 88.6 1.2 2.7E-05 37.3 5.8 55 82-140 9-69 (184)
209 PF10309 DUF2414: Protein of u 88.5 2.1 4.6E-05 29.0 5.7 51 232-287 6-62 (62)
210 KOG4410 5-formyltetrahydrofola 88.0 0.56 1.2E-05 41.4 3.4 49 68-119 330-378 (396)
211 PF07292 NID: Nmi/IFP 35 domai 88.0 0.93 2E-05 33.1 4.1 23 231-253 52-74 (88)
212 KOG2135 Proteins containing th 85.9 0.47 1E-05 44.8 2.0 71 67-141 371-445 (526)
213 KOG2318 Uncharacterized conser 84.7 4.6 9.9E-05 39.4 7.9 75 229-304 172-304 (650)
214 KOG1923 Rac1 GTPase effector F 81.0 4.9 0.00011 40.5 6.8 23 69-91 386-412 (830)
215 PF08206 OB_RNB: Ribonuclease 79.2 2.6 5.5E-05 28.1 3.0 47 268-319 7-56 (58)
216 KOG4285 Mitotic phosphoprotein 77.7 5 0.00011 35.9 5.1 58 234-294 200-258 (350)
217 KOG4285 Mitotic phosphoprotein 77.5 5.1 0.00011 35.9 5.1 52 73-129 202-253 (350)
218 PF11767 SET_assoc: Histone ly 75.3 11 0.00024 25.8 5.3 44 79-129 11-54 (66)
219 PF14111 DUF4283: Domain of un 74.4 4 8.6E-05 32.7 3.5 35 234-268 107-142 (153)
220 KOG0804 Cytoplasmic Zn-finger 74.2 9.9 0.00022 36.0 6.4 62 68-129 74-136 (493)
221 KOG4483 Uncharacterized conser 74.2 8.4 0.00018 35.9 5.8 59 65-128 388-447 (528)
222 PF03880 DbpA: DbpA RNA bindin 72.7 21 0.00046 24.8 6.5 55 78-139 11-74 (74)
223 KOG4410 5-formyltetrahydrofola 71.3 12 0.00026 33.3 5.9 52 231-283 330-381 (396)
224 PF09707 Cas_Cas2CT1978: CRISP 64.0 14 0.00031 26.8 4.1 47 69-116 26-72 (86)
225 PF10567 Nab6_mRNP_bdg: RNA-re 61.5 13 0.00029 33.2 4.3 73 231-306 15-106 (309)
226 KOG1925 Rac1 GTPase effector F 60.7 29 0.00062 33.6 6.6 26 66-91 304-329 (817)
227 PF15513 DUF4651: Domain of un 59.8 19 0.00042 24.3 3.9 19 246-264 9-27 (62)
228 PF03468 XS: XS domain; Inter 59.8 8.5 0.00019 29.7 2.5 57 70-127 10-76 (116)
229 PF02714 DUF221: Domain of unk 59.0 12 0.00026 34.1 3.9 34 111-144 1-36 (325)
230 PF03468 XS: XS domain; Inter 58.6 7.4 0.00016 30.0 2.0 50 234-283 11-70 (116)
231 PF11411 DNA_ligase_IV: DNA li 56.6 8.1 0.00017 23.0 1.5 17 241-257 19-35 (36)
232 KOG4672 Uncharacterized conser 54.1 30 0.00065 32.5 5.4 9 244-252 471-479 (487)
233 PF15513 DUF4651: Domain of un 54.0 26 0.00057 23.7 3.7 20 83-102 9-28 (62)
234 KOG4008 rRNA processing protei 53.1 8.7 0.00019 33.2 1.7 34 230-263 39-72 (261)
235 COG5178 PRP8 U5 snRNP spliceos 52.3 14 0.00031 39.3 3.3 14 24-37 9-22 (2365)
236 PF11767 SET_assoc: Histone ly 51.8 64 0.0014 22.1 5.5 48 242-294 11-60 (66)
237 KOG2318 Uncharacterized conser 50.7 88 0.0019 30.9 8.1 75 65-139 171-305 (650)
238 PF13046 DUF3906: Protein of u 49.2 23 0.0005 24.0 2.9 33 242-274 29-63 (64)
239 PF14893 PNMA: PNMA 48.1 21 0.00046 32.9 3.5 72 230-305 17-94 (331)
240 KOG2891 Surface glycoprotein [ 46.5 19 0.00042 31.9 2.9 78 231-308 149-268 (445)
241 KOG1923 Rac1 GTPase effector F 46.3 68 0.0015 32.8 6.9 6 89-94 403-408 (830)
242 KOG4213 RNA-binding protein La 44.6 32 0.00069 28.6 3.6 58 68-129 111-171 (205)
243 KOG4483 Uncharacterized conser 44.1 42 0.00092 31.4 4.7 55 230-287 390-446 (528)
244 KOG4365 Uncharacterized conser 43.9 7.1 0.00015 36.8 -0.2 77 233-312 5-86 (572)
245 PRK11558 putative ssRNA endonu 43.2 44 0.00094 24.9 3.9 48 69-117 28-75 (97)
246 COG0150 PurM Phosphoribosylami 42.8 14 0.0003 33.9 1.5 48 82-131 275-323 (345)
247 PF08262 Lem_TRP: Leucophaea m 41.4 13 0.00028 15.4 0.5 6 7-12 2-7 (10)
248 KOG2236 Uncharacterized conser 39.5 80 0.0017 30.3 5.9 9 5-13 411-419 (483)
249 KOG4008 rRNA processing protei 38.2 30 0.00064 30.1 2.7 36 65-100 37-72 (261)
250 PF07292 NID: Nmi/IFP 35 domai 37.5 18 0.00039 26.4 1.1 23 68-90 52-74 (88)
251 KOG2675 Adenylate cyclase-asso 37.4 38 0.00082 32.2 3.4 8 85-92 264-271 (480)
252 KOG4019 Calcineurin-mediated s 36.5 40 0.00087 28.1 3.1 69 69-141 11-89 (193)
253 PF14893 PNMA: PNMA 36.3 32 0.0007 31.7 2.8 71 68-140 18-95 (331)
254 KOG2295 C2H2 Zn-finger protein 34.4 9.9 0.00021 37.0 -0.8 64 231-294 231-300 (648)
255 COG5638 Uncharacterized conser 33.6 61 0.0013 30.5 4.1 40 224-263 139-183 (622)
256 KOG2891 Surface glycoprotein [ 32.7 62 0.0013 28.8 3.8 33 69-101 150-194 (445)
257 PF13046 DUF3906: Protein of u 31.7 45 0.00098 22.6 2.2 33 81-113 31-63 (64)
258 KOG2295 C2H2 Zn-finger protein 31.2 8.2 0.00018 37.5 -1.9 62 68-129 231-294 (648)
259 KOG0862 Synaptobrevin/VAMP-lik 30.8 40 0.00086 28.9 2.3 30 246-279 89-119 (216)
260 PRK15319 AIDA autotransporter- 29.8 73 0.0016 36.1 4.5 7 69-75 1742-1748(2039)
261 PF08544 GHMP_kinases_C: GHMP 29.8 1.9E+02 0.0041 19.9 6.0 43 83-128 37-79 (85)
262 TIGR01873 cas_CT1978 CRISPR-as 29.6 78 0.0017 23.0 3.3 48 69-117 26-74 (87)
263 PF00403 HMA: Heavy-metal-asso 29.5 1.6E+02 0.0035 19.0 6.2 46 233-280 1-46 (62)
264 COG5193 LHP1 La protein, small 28.4 32 0.0007 32.2 1.5 61 67-127 173-245 (438)
265 PF08156 NOP5NT: NOP5NT (NUC12 27.7 22 0.00047 24.4 0.2 38 83-129 27-65 (67)
266 KOG1295 Nonsense-mediated deca 27.0 72 0.0016 29.8 3.4 65 231-295 7-80 (376)
267 cd04889 ACT_PDH-BS-like C-term 26.7 1.7E+02 0.0037 18.4 5.0 42 83-125 13-55 (56)
268 KOG4365 Uncharacterized conser 26.5 17 0.00037 34.4 -0.7 73 69-142 4-82 (572)
269 KOG2893 Zn finger protein [Gen 25.7 3.2E+02 0.0069 23.9 6.8 11 239-249 318-328 (341)
270 KOG4019 Calcineurin-mediated s 24.6 52 0.0011 27.4 1.8 73 232-308 11-90 (193)
271 CHL00123 rps6 ribosomal protei 24.0 2E+02 0.0044 21.2 4.8 58 233-292 10-90 (97)
272 PF01698 FLO_LFY: Floricaula / 23.5 27 0.00058 32.6 0.0 11 84-94 50-60 (386)
273 PF02757 YLP: YLP motif; Inte 23.2 39 0.00085 13.7 0.5 6 2-7 2-7 (9)
274 PRK14548 50S ribosomal protein 23.0 1.6E+02 0.0035 21.2 3.9 57 70-128 22-81 (84)
275 PF01690 PLRV_ORF5: Potato lea 22.9 73 0.0016 30.6 2.7 10 110-119 125-134 (465)
276 PF12385 Peptidase_C70: Papain 21.3 2E+02 0.0043 23.6 4.5 49 242-290 95-160 (166)
277 PF12392 DUF3656: Collagenase 20.3 2.3E+02 0.005 21.6 4.7 46 78-128 64-114 (122)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=1.5e-31 Score=245.05 Aligned_cols=163 Identities=24% Similarity=0.317 Sum_probs=138.9
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
....++|||+|||+++||++|+++|+.||.|+.|+|..+ +++++|||||+|.+.++|++||+.|+ .++.|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 445799999999999999999999999999988877654 56789999999999999999999998 889999988
Q ss_pred ccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCC
Q 020632 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (323)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (323)
++.....
T Consensus 184 a~p~~~~------------------------------------------------------------------------- 190 (346)
T TIGR01659 184 ARPGGES------------------------------------------------------------------------- 190 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7531100
Q ss_pred CCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCcee
Q 020632 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLF 292 (323)
Q Consensus 219 ~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l 292 (323)
....+|||+||+.++||++|+++|++||.|+.|+|+.++ .++||||+|++.++|+ ++.|||..|
T Consensus 191 ----------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 191 ----------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ----------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 004569999999999999999999999999999997543 4689999999999999 999999998
Q ss_pred ccCCCCceEEEEcCccccc
Q 020632 293 KEKLSDGISSNWDQWRLRS 311 (323)
Q Consensus 293 ~g~~g~~l~V~~ak~~~~~ 311 (323)
.+ .++.|+|.|++...+.
T Consensus 261 ~g-~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 261 EG-GSQPLTVRLAEEHGKA 278 (346)
T ss_pred CC-CceeEEEEECCccccc
Confidence 65 3478999999876443
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.7e-29 Score=233.44 Aligned_cols=239 Identities=18% Similarity=0.169 Sum_probs=142.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----C--CCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----K--GSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~--g~~l~v~~a 139 (323)
.++|||+|||.++++++|+++|+.||.|..+.+..+ .+.++|||||+|.+.++|++|++.|+ . +..|.|.++
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 478999999999999999999999999887776554 45689999999999999999999998 3 367888888
Q ss_pred cCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCcc-
Q 020632 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGS-------VHMPGMGNSAFNTIGYPHTQSHENFDARGGSLI- 211 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (323)
...................................+... .....+...........................
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 654321111000000000000000000000000000000 000000000000000000000000000000000
Q ss_pred ccc-cCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--H
Q 020632 212 TTA-KFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--C 284 (323)
Q Consensus 212 ~~~-~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~ 284 (323)
... ..........+.....+.+|||+|||+++++++|+++|++||.|++|+|+.+ .++|||||+|.+.++|. +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 000 0000011111122334668999999999999999999999999999999754 36899999999999999 9
Q ss_pred HhhCCceeccCCCCceEEEEcCccc
Q 020632 285 HILFSLLFKEKLSDGISSNWDQWRL 309 (323)
Q Consensus 285 ~~lnG~~l~g~~g~~l~V~~ak~~~ 309 (323)
.+|||..|.| +.|+|+|+.++.
T Consensus 329 ~~lnG~~~~g---r~i~V~~~~~~~ 350 (352)
T TIGR01661 329 LSLNGYTLGN---RVLQVSFKTNKA 350 (352)
T ss_pred HHhCCCEECC---eEEEEEEccCCC
Confidence 9999999966 999999987763
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.1e-30 Score=231.36 Aligned_cols=230 Identities=19% Similarity=0.190 Sum_probs=149.6
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC-----CCCeEEEEEccC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAKS 141 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~~ 141 (323)
+.||||.||.++.|+||.-||++.|+|..++|.++ ++.++|||||+|.+.++|++|++.|| .|+.|.|+.+..
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 99999999999999999999999999888877665 78899999999999999999999999 899999999877
Q ss_pred CCcccCCCCCCCCc------cCCcCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCcCCCCCCcc--
Q 020632 142 NSRSKRSRTDDEWT------GSDKKARGPSAFSRGTADLGIGSVHMPG--MGNSAFNTIGYPHTQSHENFDARGGSLI-- 211 (323)
Q Consensus 142 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 211 (323)
+.+.--...-..+. +..+...+..++. .+..+. ..+.++....|-....+.-+ .+.+.+.
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVi---------vy~~p~dk~KNRGFaFveYe~H~~Aa~a-RrKl~~g~~ 233 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVI---------VYPSPDDKTKNRGFAFVEYESHRAAAMA-RRKLMPGKI 233 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEE---------EecCccccccccceEEEEeecchhHHHH-HhhccCCce
Confidence 66511111000000 0000000000000 000000 00111111111000000000 0000000
Q ss_pred ------ccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--
Q 020632 212 ------TTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-- 283 (323)
Q Consensus 212 ------~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-- 283 (323)
..+.|...............+.|||+||+.++|||.|+.+|++||.|++|+.++ .||||+|.+.++|.
T Consensus 234 klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r----DYaFVHf~eR~davkA 309 (506)
T KOG0117|consen 234 KLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR----DYAFVHFAEREDAVKA 309 (506)
T ss_pred eecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc----ceeEEeecchHHHHHH
Confidence 001111111111111122467899999999999999999999999999999885 69999999999999
Q ss_pred HHhhCCceeccCCCCceEEEEcCccccccccC
Q 020632 284 CHILFSLLFKEKLSDGISSNWDQWRLRSWIQS 315 (323)
Q Consensus 284 ~~~lnG~~l~g~~g~~l~V~~ak~~~~~~~~~ 315 (323)
|+.|||++| ||..|.|.+||...++++.+
T Consensus 310 m~~~ngkel---dG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 310 MKETNGKEL---DGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HHHhcCcee---cCceEEEEecCChhhhccch
Confidence 999999999 55899999999987776653
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.5e-29 Score=241.96 Aligned_cols=168 Identities=13% Similarity=0.176 Sum_probs=137.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+||++++++++|+++|+.||.|.++.|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4589999999999999999999999999998887654 57789999999999999999999998 89999987432
Q ss_pred CCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCC
Q 020632 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (323)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
...... ... . ..
T Consensus 186 ~~p~a~-~~~--~------~~----------------------------------------------------------- 197 (612)
T TIGR01645 186 NMPQAQ-PII--D------MV----------------------------------------------------------- 197 (612)
T ss_pred cccccc-ccc--c------cc-----------------------------------------------------------
Confidence 110000 000 0 00
Q ss_pred CCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 221 ~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
.......++|||+||+.++++++|+++|+.||.|++|+|.++ .++|||||+|++.++|. +..|||+.|+|
T Consensus 198 ----~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgG 273 (612)
T TIGR01645 198 ----QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG 273 (612)
T ss_pred ----cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 000012567999999999999999999999999999999764 35799999999999999 99999999976
Q ss_pred CCCCceEEEEcCccc
Q 020632 295 KLSDGISSNWDQWRL 309 (323)
Q Consensus 295 ~~g~~l~V~~ak~~~ 309 (323)
+.|+|.++..+.
T Consensus 274 ---r~LrV~kAi~pP 285 (612)
T TIGR01645 274 ---QYLRVGKCVTPP 285 (612)
T ss_pred ---eEEEEEecCCCc
Confidence 999999997653
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-29 Score=214.51 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=141.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.-.|||+.|...++-++|++.|.+||+|..+++.++ +.+++|||||.|.+.++|++||..|| ++|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 467999999999999999999999999988776654 78899999999999999999999999 999999999976
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
+........ ...+.-
T Consensus 142 Kp~e~n~~~----ltfdeV------------------------------------------------------------- 156 (321)
T KOG0148|consen 142 KPSEMNGKP----LTFDEV------------------------------------------------------------- 156 (321)
T ss_pred CccccCCCC----ccHHHH-------------------------------------------------------------
Confidence 542110000 000000
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCc
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDG 299 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~ 299 (323)
-.+..+.+++|||+||..-+||++|++.|+.||.|.+||+.+++ |||||.|++.|+|. |.+|||..|+| ..
T Consensus 157 --~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv~mNntei~G---~~ 229 (321)
T KOG0148|consen 157 --YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIVQMNNTEIGG---QL 229 (321)
T ss_pred --hccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHHHhcCceeCc---eE
Confidence 00112238889999999999999999999999999999999866 89999999999999 99999999977 89
Q ss_pred eEEEEcCccc
Q 020632 300 ISSNWDQWRL 309 (323)
Q Consensus 300 l~V~~ak~~~ 309 (323)
+|+.|.|...
T Consensus 230 VkCsWGKe~~ 239 (321)
T KOG0148|consen 230 VRCSWGKEGD 239 (321)
T ss_pred EEEeccccCC
Confidence 9999998763
No 6
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.96 E-value=8.8e-29 Score=203.68 Aligned_cols=232 Identities=40% Similarity=0.588 Sum_probs=153.3
Q ss_pred CCCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCC---CCCceEEEEEccHHHHHHHHHHhC-------CCCe
Q 020632 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ---NSQPFAFAVFSDQQSALGAMYALN-------KGST 133 (323)
Q Consensus 64 ~~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~---~~~g~aFV~f~~~~~A~~A~~~l~-------~g~~ 133 (323)
...++|||||++||.++...||+.||..|-.++.+.|+...+ ..+.+|||+|.+..+|.+|+.+|| .+..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 345689999999999999999999999999999988886533 245799999999999999999999 8999
Q ss_pred EEEEEccCCCcccCCCCCCCCcc--------CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-Cc-
Q 020632 134 LYIDLAKSNSRSKRSRTDDEWTG--------SDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHE-NF- 203 (323)
Q Consensus 134 l~v~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 203 (323)
|+|++|+++.+.++......... ..+..++...... +.+.. .+..-....+....+..+... ..
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qh---d~~l~---~p~~l~~~~~a~al~~~~~t~~~~l 183 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQH---DEGLS---DPDELQEPGNADALKENDTTKSEAL 183 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhc---ccccc---CccccCCccccccCCCccccchhhh
Confidence 99999999988766654332110 0011110000000 00000 000000000000000000000 00
Q ss_pred -CCCCCCccccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhh
Q 020632 204 -DARGGSLITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVC 282 (323)
Q Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A 282 (323)
.+....++..+..-.+... ......|.||||.||..+|||++|+.+|+.|.++..++|..++...+|||+|++.+.|
T Consensus 184 ~a~~~~~P~a~a~l~ks~q~--~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~a 261 (284)
T KOG1457|consen 184 SAPDSKAPSANAHLEKSSQG--GSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQA 261 (284)
T ss_pred hhhhhcCCcccchhhhhhcc--cccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHH
Confidence 0000000011100000000 0112248899999999999999999999999999999999878778999999999999
Q ss_pred H--HHhhCCceeccCCCCceEEE
Q 020632 283 V--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 283 ~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
. |..|+|..|..+|+.+|+|+
T Consensus 262 t~am~~lqg~~~s~~drgg~~ie 284 (284)
T KOG1457|consen 262 TDAMNHLQGNLLSSSDRGGMHIE 284 (284)
T ss_pred HHHHHHhhcceeccccCCCcccC
Confidence 9 99999999999999999884
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.1e-28 Score=229.31 Aligned_cols=158 Identities=25% Similarity=0.302 Sum_probs=136.8
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
..+|||+|||.+++|++|+++|+.||+|..|.|..+ ++.++|||||+|.+.++|++||+.|+ .|+.|+|+|++.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 489999999999999999999999999998887654 56789999999999999999999999 999999998854
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
.....
T Consensus 83 ~~~~~--------------------------------------------------------------------------- 87 (352)
T TIGR01661 83 SSDSI--------------------------------------------------------------------------- 87 (352)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 21100
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
...+|||+||+.++++++|+++|++||.|..+++..+ ..+|||||+|++.++|. +..|||..+.+
T Consensus 88 --------~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g- 158 (352)
T TIGR01661 88 --------KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG- 158 (352)
T ss_pred --------ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC-
Confidence 1446999999999999999999999999999999654 35789999999999999 99999999976
Q ss_pred CCCceEEEEcCccc
Q 020632 296 LSDGISSNWDQWRL 309 (323)
Q Consensus 296 ~g~~l~V~~ak~~~ 309 (323)
.+..|+|.|+..+.
T Consensus 159 ~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 159 CTEPITVKFANNPS 172 (352)
T ss_pred CceeEEEEECCCCC
Confidence 34678999987664
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=3.6e-28 Score=234.09 Aligned_cols=164 Identities=16% Similarity=0.153 Sum_probs=134.4
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~~ 142 (323)
++|||+|||++++|++|+++|+.||.|..+.|.. ++|||||+|.+.++|++|++.++ .|+.|+|+|+..+
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 8999999999999999999999999999988763 56899999999999999999753 9999999999653
Q ss_pred CcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCC
Q 020632 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (323)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
...+.. ..+. +..
T Consensus 79 ~~~~~~-~~~~-------------------~~~----------------------------------------------- 91 (481)
T TIGR01649 79 EIKRDG-NSDF-------------------DSA----------------------------------------------- 91 (481)
T ss_pred ccccCC-CCcc-------------------cCC-----------------------------------------------
Confidence 211110 0000 000
Q ss_pred CCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 223 ~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
......+|||+||++.+|+++|+++|+.||.|.+|++.++..+++|||+|.+.++|. ++.|||..|.+ .++.|
T Consensus 92 ----~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~-~~~~l 166 (481)
T TIGR01649 92 ----GPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYN-GCCTL 166 (481)
T ss_pred ----CCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccC-CceEE
Confidence 000134699999999999999999999999999999988666679999999999999 99999999976 34789
Q ss_pred EEEEcCcc
Q 020632 301 SSNWDQWR 308 (323)
Q Consensus 301 ~V~~ak~~ 308 (323)
+|+|++..
T Consensus 167 ~v~~sk~~ 174 (481)
T TIGR01649 167 KIEYAKPT 174 (481)
T ss_pred EEEEecCC
Confidence 99999864
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=220.72 Aligned_cols=163 Identities=21% Similarity=0.275 Sum_probs=139.4
Q ss_pred CCCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC-------CCCeE
Q 020632 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-------KGSTL 134 (323)
Q Consensus 64 ~~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~-------~g~~l 134 (323)
.+.+.-.||||-||+.++|.||+++|++||.|..|.|.++ ++.++|||||.|.+.++|.+|+.+|+ ...+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3456788999999999999999999999999877766554 56789999999999999999999998 66778
Q ss_pred EEEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccc
Q 020632 135 YIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTA 214 (323)
Q Consensus 135 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
.|.+|.......
T Consensus 110 qvk~Ad~E~er~-------------------------------------------------------------------- 121 (510)
T KOG0144|consen 110 QVKYADGERERI-------------------------------------------------------------------- 121 (510)
T ss_pred eecccchhhhcc--------------------------------------------------------------------
Confidence 888775422110
Q ss_pred cCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCC
Q 020632 215 KFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFS 289 (323)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG 289 (323)
...+.|||+-|+..+||.|++++|++||.|++|+|.++. +||||||.|++.+.|. |++|||
T Consensus 122 --------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 122 --------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred --------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 014559999999999999999999999999999998744 6899999999999999 999999
Q ss_pred ceeccCCCCceEEEEcCcc
Q 020632 290 LLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 290 ~~l~g~~g~~l~V~~ak~~ 308 (323)
..-...+..+|.|.||..+
T Consensus 188 ~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred ceeeccCCCceEEEecccC
Confidence 9877667799999999655
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=5.6e-27 Score=225.79 Aligned_cols=190 Identities=18% Similarity=0.215 Sum_probs=136.9
Q ss_pred CcceEEEeCCCC-CCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~-~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
..++|||+||++ .+++++|+++|+.||.|..|.+..+ .+|||||+|.+.++|++||..|| .|+.|+|.+++.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 348999999998 6999999999999999999887643 36899999999999999999999 999999999865
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
........... ........+. ..+...... . ....
T Consensus 351 ~~~~~~~~~~~-----~~~~~~~~d~----~~~~~~r~~---------------~---------------------~~~~ 385 (481)
T TIGR01649 351 QNVQPPREGQL-----DDGLTSYKDY----SSSRNHRFK---------------K---------------------PGSA 385 (481)
T ss_pred ccccCCCCCcC-----cCCCcccccc----cCCccccCC---------------C---------------------cccc
Confidence 43211100000 0000000000 000000000 0 0000
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCC--eEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPG--FLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~--i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
.. ....+++++|||+|||.++|+++|+++|+.||. |+.|++..++ ++++|||+|++.++|. +..|||+.|.+
T Consensus 386 ~~-~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~- 463 (481)
T TIGR01649 386 NK-NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNE- 463 (481)
T ss_pred cc-cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCC-
Confidence 00 011245889999999999999999999999998 8889886533 4689999999999999 99999999966
Q ss_pred CCCc------eEEEEcCcc
Q 020632 296 LSDG------ISSNWDQWR 308 (323)
Q Consensus 296 ~g~~------l~V~~ak~~ 308 (323)
+. |+|+|++.+
T Consensus 464 --~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 464 --PNGSAPYHLKVSFSTSR 480 (481)
T ss_pred --CCCCccceEEEEeccCC
Confidence 54 999999865
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6.3e-27 Score=224.97 Aligned_cols=170 Identities=18% Similarity=0.290 Sum_probs=136.3
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEc
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (323)
+.+.++|||+|||..+++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++||.+.+ .|+.|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 445699999999999999999999999999988887654 56789999999999999999997544 8899998875
Q ss_pred cCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCC
Q 020632 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (323)
............
T Consensus 166 ~~~~~~~~~~~~-------------------------------------------------------------------- 177 (457)
T TIGR01622 166 QAEKNRAAKAAT-------------------------------------------------------------------- 177 (457)
T ss_pred chhhhhhhhccc--------------------------------------------------------------------
Confidence 432110000000
Q ss_pred CCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceec
Q 020632 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFK 293 (323)
Q Consensus 220 ~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~ 293 (323)
......+..++|||+||+.++|+++|+++|+.||.|..|++..+ .++|||||+|.+.++|. +..|||..|.
T Consensus 178 ---~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~ 254 (457)
T TIGR01622 178 ---HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA 254 (457)
T ss_pred ---ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC
Confidence 00000112678999999999999999999999999999999753 34689999999999999 8899999996
Q ss_pred cCCCCceEEEEcCcc
Q 020632 294 EKLSDGISSNWDQWR 308 (323)
Q Consensus 294 g~~g~~l~V~~ak~~ 308 (323)
| +.|+|.|++..
T Consensus 255 g---~~i~v~~a~~~ 266 (457)
T TIGR01622 255 G---RPIKVGYAQDS 266 (457)
T ss_pred C---EEEEEEEccCC
Confidence 6 99999998643
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.8e-27 Score=231.89 Aligned_cols=155 Identities=22% Similarity=0.342 Sum_probs=133.5
Q ss_pred eEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 70 tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
+|||+|||.++||++|+++|++||.|.+|+|..+ +++++|||||+|.+.++|++|++.++ .|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999998887654 46789999999999999999999999 89999999875321
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
..++.
T Consensus 82 ~~~~~--------------------------------------------------------------------------- 86 (562)
T TIGR01628 82 SLRRS--------------------------------------------------------------------------- 86 (562)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 10000
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
...+|||+||+.++|+++|+++|++||.|..|++..+ +++|||||+|++.++|. +..|||..+.+ +
T Consensus 87 ------~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~---~ 157 (562)
T TIGR01628 87 ------GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND---K 157 (562)
T ss_pred ------CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecC---c
Confidence 0345999999999999999999999999999999754 35799999999999999 99999999966 8
Q ss_pred ceEEEEcCcc
Q 020632 299 GISSNWDQWR 308 (323)
Q Consensus 299 ~l~V~~ak~~ 308 (323)
.|.|...+.+
T Consensus 158 ~i~v~~~~~~ 167 (562)
T TIGR01628 158 EVYVGRFIKK 167 (562)
T ss_pred eEEEeccccc
Confidence 9999876544
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=6.9e-27 Score=224.81 Aligned_cols=159 Identities=22% Similarity=0.259 Sum_probs=131.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCC-ceEEEecc---CCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRS---STQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYI 136 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~-v~~~~~~~---~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v 136 (323)
++++|||+|||.++++++|.++|++++. +..+.+.. +..+++|||||+|.+.++|+.|+..|+ .|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999976 44444322 245689999999999999999998875 6889999
Q ss_pred EEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccC
Q 020632 137 DLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKF 216 (323)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
+|+..+......
T Consensus 217 dwA~p~~~~d~~-------------------------------------------------------------------- 228 (578)
T TIGR01648 217 DWAEPEEEVDED-------------------------------------------------------------------- 228 (578)
T ss_pred Eeeccccccccc--------------------------------------------------------------------
Confidence 998643211000
Q ss_pred CCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCcee
Q 020632 217 NNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKC--PGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLF 292 (323)
Q Consensus 217 ~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~f--G~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l 292 (323)
.....++|||+||+.++||++|+++|++| |.|++|++++ +||||+|++.++|. ++.|||..|
T Consensus 229 ----------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i 294 (578)
T TIGR01648 229 ----------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKEL 294 (578)
T ss_pred ----------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEE
Confidence 00015789999999999999999999999 9999998875 79999999999999 889999999
Q ss_pred ccCCCCceEEEEcCcccc
Q 020632 293 KEKLSDGISSNWDQWRLR 310 (323)
Q Consensus 293 ~g~~g~~l~V~~ak~~~~ 310 (323)
.+ +.|+|+||+.+..
T Consensus 295 ~G---r~I~V~~Akp~~~ 309 (578)
T TIGR01648 295 EG---SEIEVTLAKPVDK 309 (578)
T ss_pred CC---EEEEEEEccCCCc
Confidence 65 9999999987643
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.6e-27 Score=196.02 Aligned_cols=167 Identities=23% Similarity=0.284 Sum_probs=145.5
Q ss_pred CCCCCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEE
Q 020632 62 YGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (323)
Q Consensus 62 ~~~~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~ 135 (323)
++.++...+|.|.-||.++|++||+.||...|+|++|+|.++ ++.+.||+||.|.+.++|++|+..|| ..++|+
T Consensus 35 ~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIK 114 (360)
T KOG0145|consen 35 NDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIK 114 (360)
T ss_pred CCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEE
Confidence 334566788999999999999999999999999999998776 56788999999999999999999999 899999
Q ss_pred EEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCcccccc
Q 020632 136 IDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAK 215 (323)
Q Consensus 136 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (323)
|.||+..++.-+
T Consensus 115 VSyARPSs~~Ik-------------------------------------------------------------------- 126 (360)
T KOG0145|consen 115 VSYARPSSDSIK-------------------------------------------------------------------- 126 (360)
T ss_pred EEeccCChhhhc--------------------------------------------------------------------
Confidence 999976544322
Q ss_pred CCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEe----cCCCCCeEEEEecCchhhH--HHhhCC
Q 020632 216 FNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQ----STYGPPVAFVDFQVTCVCV--CHILFS 289 (323)
Q Consensus 216 ~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~----~~~~~g~aFV~F~~~~~A~--~~~lnG 289 (323)
...|||.+||..+|..||+++|++||.|..-||. ++-++|+|||.|+...+|+ |..|||
T Consensus 127 ---------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 127 ---------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred ---------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 2339999999999999999999999999888874 4447899999999999999 999999
Q ss_pred ceeccCCCCceEEEEcCcccccc
Q 020632 290 LLFKEKLSDGISSNWDQWRLRSW 312 (323)
Q Consensus 290 ~~l~g~~g~~l~V~~ak~~~~~~ 312 (323)
..-.| ...+|.|.||.++..+.
T Consensus 192 ~~P~g-~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 192 QKPSG-CTEPITVKFANNPSQKT 213 (360)
T ss_pred CCCCC-CCCCeEEEecCCccccc
Confidence 99877 66899999998885543
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=7.5e-27 Score=186.84 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=136.1
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
.+...||||+||+..++++.|++||-+.|+|..+.+..+ +...+|||||+|.+.++|+.|++.|| .|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 455699999999999999999999999999999988765 56689999999999999999999999 999999987
Q ss_pred ccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCC
Q 020632 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (323)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (323)
+... .+.-
T Consensus 86 as~~--~~nl---------------------------------------------------------------------- 93 (203)
T KOG0131|consen 86 ASAH--QKNL---------------------------------------------------------------------- 93 (203)
T ss_pred cccc--cccc----------------------------------------------------------------------
Confidence 6410 0000
Q ss_pred CCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EE----ecCCCCCeEEEEecCchhhH--HHhhCCce
Q 020632 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKL-KI----QSTYGPPVAFVDFQVTCVCV--CHILFSLL 291 (323)
Q Consensus 219 ~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v-~i----~~~~~~g~aFV~F~~~~~A~--~~~lnG~~ 291 (323)
..+..|||+||.++++|..|.++|+.||.+... ++ .++..+|||||.|++.+.+. +.+|||+.
T Consensus 94 ----------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 94 ----------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ----------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 014559999999999999999999999987652 22 23456789999999999999 99999999
Q ss_pred eccCCCCceEEEEcCccccc
Q 020632 292 FKEKLSDGISSNWDQWRLRS 311 (323)
Q Consensus 292 l~g~~g~~l~V~~ak~~~~~ 311 (323)
+.. ++++|+|++.+-++
T Consensus 164 l~n---r~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCN---RPITVSYAFKKDTK 180 (203)
T ss_pred hcC---CceEEEEEEecCCC
Confidence 977 99999999776444
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1.5e-26 Score=227.61 Aligned_cols=176 Identities=20% Similarity=0.303 Sum_probs=138.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----C----CCeEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----K----GSTLYID 137 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~----g~~l~v~ 137 (323)
..++|||+||+.++++++|+++|+.||.|..+.+..+ .+.++|||||+|.+.++|.+|++.++ . |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 3478999999999999999999999999988877654 56788999999999999999999998 5 8888887
Q ss_pred EccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCC
Q 020632 138 LAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (323)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (323)
++..+........ ..... ...
T Consensus 257 ~a~~k~er~~~~~----~~~~~-~~~------------------------------------------------------ 277 (562)
T TIGR01628 257 RAQKRAEREAELR----RKFEE-LQQ------------------------------------------------------ 277 (562)
T ss_pred cccChhhhHHHHH----hhHHh-hhh------------------------------------------------------
Confidence 7754432100000 00000 000
Q ss_pred CCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCcee
Q 020632 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLF 292 (323)
Q Consensus 218 ~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l 292 (323)
.........+|||+||+.++|+++|+++|++||.|++|+++.+ .++|||||+|.+.++|. +.+|||+.|
T Consensus 278 ------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~ 351 (562)
T TIGR01628 278 ------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRML 351 (562)
T ss_pred ------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCee
Confidence 0000012567999999999999999999999999999999754 35799999999999999 999999999
Q ss_pred ccCCCCceEEEEcCcccc
Q 020632 293 KEKLSDGISSNWDQWRLR 310 (323)
Q Consensus 293 ~g~~g~~l~V~~ak~~~~ 310 (323)
.| +.|+|.||+.+..
T Consensus 352 ~g---k~l~V~~a~~k~~ 366 (562)
T TIGR01628 352 GG---KPLYVALAQRKEQ 366 (562)
T ss_pred CC---ceeEEEeccCcHH
Confidence 66 9999999987643
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.1e-25 Score=216.05 Aligned_cols=182 Identities=15% Similarity=0.207 Sum_probs=126.8
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCC------------CceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFP------------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--- 129 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G------------~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~--- 129 (323)
....++|||||||+++|+++|+++|+.++ .|..+.+. .++|||||+|.+.++|..||+ |+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~----~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN----KEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC----CCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 44569999999999999999999999862 23333332 568899999999999999995 66
Q ss_pred -CCCeEEEEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 020632 130 -KGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGG 208 (323)
Q Consensus 130 -~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
.|+.|+|......... ....... .... . .. . .
T Consensus 247 ~~g~~l~v~r~~~~~~~--~~~~~~~---~~~~------~----~~-------------------~----~--------- 279 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPV--PQITPEV---SQKN------P----DD-------------------N----A--------- 279 (509)
T ss_pred eeCceeEecCccccCCc--cccCCCC---CCCC------C----cc-------------------c----c---------
Confidence 7888887543221100 0000000 0000 0 00 0 0
Q ss_pred CccccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH-
Q 020632 209 SLITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV- 283 (323)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~- 283 (323)
. .... ...........++|||+|||..+|+++|+++|+.||.|+.++|+.+ .++|||||+|.+.++|.
T Consensus 280 ---~--~~~~--~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ 352 (509)
T TIGR01642 280 ---K--NVEK--LVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDV 352 (509)
T ss_pred ---c--cccc--ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHH
Confidence 0 0000 0000001123678999999999999999999999999999999753 35799999999999999
Q ss_pred -HHhhCCceeccCCCCceEEEEcCcc
Q 020632 284 -CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 284 -~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
+..|||..|.+ +.|+|.++...
T Consensus 353 A~~~l~g~~~~~---~~l~v~~a~~~ 375 (509)
T TIGR01642 353 AIAALNGKDTGD---NKLHVQRACVG 375 (509)
T ss_pred HHHHcCCCEECC---eEEEEEECccC
Confidence 89999999976 89999998654
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=187.07 Aligned_cols=218 Identities=17% Similarity=0.183 Sum_probs=142.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~ 138 (323)
...+|||++||..+|..||+++|++||.|...+|..+ ++.++|.|||.|+..++|+.||..|| ...+|.|.|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 3478999999999999999999999999654433332 67799999999999999999999999 668899999
Q ss_pred ccCCCcccCCCCCCCCc-cCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCC
Q 020632 139 AKSNSRSKRSRTDDEWT-GSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (323)
Q Consensus 139 a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (323)
|...+..+......... ...++. .+..+.+..... ..+-..+... ...+++.+-..+.
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~--------------~Gp~hh~~~r~r----~~~~~~~~~~---~~rfsP~~~d~m~ 264 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRY--------------GGPMHHQAQRFR----LDNLLNPHAA---QARFSPMTIDGMS 264 (360)
T ss_pred cCCcccccchhhhHHhhcCccccC--------------CCcccchhhhhc----cccccchhhh---hccCCCccccccc
Confidence 86543311110000000 000000 000000000000 0000000000 0011111111111
Q ss_pred CCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec----CCCCCeEEEEecCchhhH--HHhhCCce
Q 020632 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQVTCVCV--CHILFSLL 291 (323)
Q Consensus 218 ~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~----~~~~g~aFV~F~~~~~A~--~~~lnG~~ 291 (323)
.-.....+......-+|||.||.++++|.-|+++|..||.|..|++++ .++||||||.+.+-++|. |..|||..
T Consensus 265 ~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 265 GLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 344 (360)
T ss_pred eeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc
Confidence 111111222222366799999999999999999999999999999975 457999999999999998 99999999
Q ss_pred eccCCCCceEEEEcCcc
Q 020632 292 FKEKLSDGISSNWDQWR 308 (323)
Q Consensus 292 l~g~~g~~l~V~~ak~~ 308 (323)
|++ |-|.|+|..++
T Consensus 345 lg~---rvLQVsFKtnk 358 (360)
T KOG0145|consen 345 LGD---RVLQVSFKTNK 358 (360)
T ss_pred ccc---eEEEEEEecCC
Confidence 987 99999997665
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=8.6e-25 Score=210.37 Aligned_cols=150 Identities=20% Similarity=0.272 Sum_probs=120.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEecc-CCCCCCceEEEEEccHHHHHHHHHHhC-----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS-STQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~~ 141 (323)
.++|||+|||++++|++|+++|++||.|..++|.. .++.++|||||+|.+.++|++||+.|| .|+.|.|.++.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~- 136 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV- 136 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc-
Confidence 38999999999999999999999999988887654 467799999999999999999999996 24444332210
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
T Consensus 137 -------------------------------------------------------------------------------- 136 (578)
T TIGR01648 137 -------------------------------------------------------------------------------- 136 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEec-----CCCCCeEEEEecCchhhH--HHhhCCc--e
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQS-----TYGPPVAFVDFQVTCVCV--CHILFSL--L 291 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~~-----~~~~g~aFV~F~~~~~A~--~~~lnG~--~ 291 (323)
..++|||+|||.++|+++|+++|++++. ++++.+.. .+++|||||+|+++++|. +..|+.. .
T Consensus 137 --------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 137 --------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred --------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 1567999999999999999999999864 55554432 235799999999999999 6666543 4
Q ss_pred eccCCCCceEEEEcCccc
Q 020632 292 FKEKLSDGISSNWDQWRL 309 (323)
Q Consensus 292 l~g~~g~~l~V~~ak~~~ 309 (323)
|.+ +.|+|+|+....
T Consensus 209 l~G---r~I~VdwA~p~~ 223 (578)
T TIGR01648 209 LWG---HVIAVDWAEPEE 223 (578)
T ss_pred ecC---ceEEEEeecccc
Confidence 544 899999987653
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=1.8e-25 Score=190.92 Aligned_cols=145 Identities=27% Similarity=0.433 Sum_probs=130.9
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCCc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNSR 144 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~~ 144 (323)
-.|||||||..+++.+|+.||++||+|..|.|.. .||||+.++...|+.|+..|+ +|..|+|+-++++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 4699999999999999999999999999998872 369999999999999999999 999999987765421
Q ss_pred ccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCCC
Q 020632 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (323)
T Consensus 77 -------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 77 -------------------------------------------------------------------------------- 76 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 225 ~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.+.+|+|+||.+.|+.+||+..|++||.|.+|+|++ +|+||+|+-.++|. +..|+|.++.| +.|+|
T Consensus 77 -----~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~g---k~m~v 144 (346)
T KOG0109|consen 77 -----ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQG---KRMHV 144 (346)
T ss_pred -----CccccccCCCCccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhccccccccc---ceeee
Confidence 145599999999999999999999999999999998 89999999999999 99999999955 99999
Q ss_pred EEcCccccc
Q 020632 303 NWDQWRLRS 311 (323)
Q Consensus 303 ~~ak~~~~~ 311 (323)
+++.++.+.
T Consensus 145 q~stsrlrt 153 (346)
T KOG0109|consen 145 QLSTSRLRT 153 (346)
T ss_pred eeecccccc
Confidence 999887655
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.6e-23 Score=204.02 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=133.4
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
+..++|||+|||..+++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|+.|++.|+ .|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999988876543 56789999999999999999999998 8999999998
Q ss_pred cCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCC
Q 020632 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (323)
.............. ..... . ... ..
T Consensus 373 ~~~~~~~~~~~~~~----~~~~~---~-----~~~-------------------------------------------~~ 397 (509)
T TIGR01642 373 CVGANQATIDTSNG----MAPVT---L-----LAK-------------------------------------------AL 397 (509)
T ss_pred ccCCCCCCcccccc----ccccc---c-----ccc-------------------------------------------cc
Confidence 64322111100000 00000 0 000 00
Q ss_pred CCCCCCCCCCCcCeEEEcCCCCC--C--------CHHHHHHHhhcCCCeEEEEEecC-------CCCCeEEEEecCchhh
Q 020632 220 SAPSGPKNVTPCATLFVANLGPT--C--------TEQELTQVFSKCPGFLKLKIQST-------YGPPVAFVDFQVTCVC 282 (323)
Q Consensus 220 ~~~~~~~~~~~~~tLfV~nLp~~--~--------te~~L~~~F~~fG~i~~v~i~~~-------~~~g~aFV~F~~~~~A 282 (323)
..........++++|+|.||... + ..++|+++|++||.|+.|+|.+. .+.|+|||+|++.++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 00000011224788999999631 1 23679999999999999999753 2358999999999999
Q ss_pred H--HHhhCCceeccCCCCceEEEEcC
Q 020632 283 V--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 283 ~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
. +..|||..|.| +.|.|.|..
T Consensus 478 ~~A~~~lnGr~~~g---r~v~~~~~~ 500 (509)
T TIGR01642 478 EKAMEGMNGRKFND---RVVVAAFYG 500 (509)
T ss_pred HHHHHHcCCCEECC---eEEEEEEeC
Confidence 9 99999999966 999999964
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=193.10 Aligned_cols=232 Identities=20% Similarity=0.187 Sum_probs=139.5
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.-.|.|+||||.+.+.+|+.+|+.||.|..|.|..+ .++-+|||||+|.+..+|+.||+.+| .||+|-|.||..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 468999999999999999999999999988888765 34456999999999999999999999 9999999999876
Q ss_pred CcccCCCCCC---C----CccCCcC-CC-CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCcCCCCCCcc
Q 020632 143 SRSKRSRTDD---E----WTGSDKK-AR-GPSAFSRGTADLGIGSVHMP--GMGNSAFNTIGYPHTQSHENFDARGGSLI 211 (323)
Q Consensus 143 ~~~~~~~~~~---~----~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
.........+ . .....+. .. ........ +....+.... .+..-..-..+.........-+.. +..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~E--d~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e--~S~ 272 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEE--DGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEE--SSG 272 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchh--cccccccccccccccchhhhcccccccccccccccc--ccc
Confidence 5422111000 0 0000000 00 00000000 0000000000 000000000000000000000000 000
Q ss_pred ccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec----CCCCCeEEEEecCchhhH--HH
Q 020632 212 TTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQVTCVCV--CH 285 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~----~~~~g~aFV~F~~~~~A~--~~ 285 (323)
.......+.......+....+||||+||++++||++|+++|++||.|+.+.|+. +.++|+|||.|.+..+|+ |.
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 000000111111233444678999999999999999999999999999999964 446899999999999999 44
Q ss_pred hh-----CC-ceeccCCCCceEEEEcC
Q 020632 286 IL-----FS-LLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 286 ~l-----nG-~~l~g~~g~~l~V~~ak 306 (323)
.. .| ..| +||.|+|..|-
T Consensus 353 ~Aspa~e~g~~ll---~GR~Lkv~~Av 376 (678)
T KOG0127|consen 353 AASPASEDGSVLL---DGRLLKVTLAV 376 (678)
T ss_pred hcCccCCCceEEE---eccEEeeeecc
Confidence 43 34 666 45999999874
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=3.5e-23 Score=199.01 Aligned_cols=232 Identities=19% Similarity=0.240 Sum_probs=139.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|.+|++.|+ .|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 489999999999999999999999999988877654 45689999999999999999999999 999999999863
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC-Ccc
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFS---------RGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGG-SLI 211 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 211 (323)
......... ................ ......+.+....+....... ................ ...
T Consensus 266 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 340 (457)
T TIGR01622 266 STYLLDAAN--TFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA---LMQKLQRDGIIDPNIPSRYA 340 (457)
T ss_pred CCccccchh--hhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh---hhcccccccccccccccccc
Confidence 322111100 0000000000000000 000000000000000000000 0000000000000000 000
Q ss_pred ccccCCCCCCCCCCC--CCCCcCeEEEcCCCCCCC----------HHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCc
Q 020632 212 TTAKFNNSSAPSGPK--NVTPCATLFVANLGPTCT----------EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVT 279 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~--~~~~~~tLfV~nLp~~~t----------e~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~ 279 (323)
.............+. ...+.++|+|.||-...+ .+||++.|++||.|+.|.+......|++||+|.++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 341 TGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSV 420 (457)
T ss_pred ccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCH
Confidence 000000000011111 234578899999965444 36899999999999999998767779999999999
Q ss_pred hhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 280 CVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 280 ~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
++|. +..|||..+.| +.|.|.|...
T Consensus 421 e~A~~A~~~lnGr~f~g---r~i~~~~~~~ 447 (457)
T TIGR01622 421 DAALAAFQALNGRYFGG---KMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHhcCcccCC---eEEEEEEEcH
Confidence 9999 99999999965 9999999743
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.2e-23 Score=189.60 Aligned_cols=180 Identities=20% Similarity=0.265 Sum_probs=139.6
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC--CCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~--~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.||||++||++++.++|.++|+.+|+|..+.+..++ ..++||+||+|.-.+++++|++.++ .|+.|+|..|+.+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 899999999999999999999999999988877663 3579999999999999999999998 8999999999765
Q ss_pred CcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCC
Q 020632 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (323)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
.+...... ......++...+.....
T Consensus 86 ~r~e~~~~-~e~~~veK~~~q~~~~k------------------------------------------------------ 110 (678)
T KOG0127|consen 86 ARSEEVEK-GENKAVEKPIEQKRPTK------------------------------------------------------ 110 (678)
T ss_pred ccchhccc-ccchhhhcccccCCcch------------------------------------------------------
Confidence 44331110 01111111111100000
Q ss_pred CCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 223 ~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
..-+.+.-.|.|+|||+.|.+.+|+.+|++||.|.+|.|-++. -.|||||+|.+..+|. +..|||..|.|
T Consensus 111 --~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~g--- 185 (678)
T KOG0127|consen 111 --AKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDG--- 185 (678)
T ss_pred --hhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecC---
Confidence 0001124569999999999999999999999999999996533 1389999999999999 99999999955
Q ss_pred CceEEEEcCcc
Q 020632 298 DGISSNWDQWR 308 (323)
Q Consensus 298 ~~l~V~~ak~~ 308 (323)
|+|-|.||-.+
T Consensus 186 R~VAVDWAV~K 196 (678)
T KOG0127|consen 186 RPVAVDWAVDK 196 (678)
T ss_pred ceeEEeeeccc
Confidence 99999999665
No 25
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.90 E-value=2.7e-22 Score=166.85 Aligned_cols=199 Identities=24% Similarity=0.304 Sum_probs=141.4
Q ss_pred cceEEEeCCCCCCchHHHHH----HhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~----~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
+.||||.||+..+..++|+. ||++||.|..|... ++.+.+|-|||.|.+.+.|..|+..|+ .|+.|+|+||
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF-KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec-CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 37999999999999999888 99999997776544 344567779999999999999999999 9999999999
Q ss_pred cCCCcccCC--CCCCCCccCCcCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccC
Q 020632 140 KSNSRSKRS--RTDDEWTGSDKKARGPSAFS-RGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKF 216 (323)
Q Consensus 140 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
+++++.... ....... ++.+...... ....+.-+ ..++.. .
T Consensus 88 ~s~sdii~~~~~~~v~~~---~k~~~~~~~~~~~~~~~ng----------~~~~~~-----------------------~ 131 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKE---KKINGEILARIKQPLDTNG----------HFYNMN-----------------------R 131 (221)
T ss_pred cCccchhhccCceecccc---CccccccccccCCcccccc----------cccccc-----------------------c
Confidence 998883322 2211111 1100000000 00000000 000000 0
Q ss_pred CCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 217 NNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 217 ~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
..-+.+......+++.+||+.|||.+++.+.|..+|++|.++++|+++. ..++.|||+|.+...|. ...|+|..|.-
T Consensus 132 ~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 132 MNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred ccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc-CCCceeEEecchhhhhHHHhhhhccceecc
Confidence 0000000012245689999999999999999999999999999999998 44599999999999988 99999999973
Q ss_pred CCCCceEEEEcC
Q 020632 295 KLSDGISSNWDQ 306 (323)
Q Consensus 295 ~~g~~l~V~~ak 306 (323)
...|+|.|++
T Consensus 211 --~~~m~i~~a~ 220 (221)
T KOG4206|consen 211 --KNTMQITFAK 220 (221)
T ss_pred --CceEEecccC
Confidence 3899999986
No 26
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.7e-21 Score=164.71 Aligned_cols=239 Identities=20% Similarity=0.264 Sum_probs=147.4
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEecc-CCCCCCceEEEEEccHHHHHHHHHHhC-------CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS-STQNSQPFAFAVFSDQQSALGAMYALN-------KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l~-------~g~~l~v~~ 138 (323)
+.|.||||-|...-.|+|++.+|..||.++.|.+.+ ..+.++|||||.|.+..+|+.||..|+ ....|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 459999999999999999999999999998887654 367799999999999999999999999 567789999
Q ss_pred ccCCCccc--CC-------CCCCCCc----------------------cC-CcCCCC----------------CCCCCCC
Q 020632 139 AKSNSRSK--RS-------RTDDEWT----------------------GS-DKKARG----------------PSAFSRG 170 (323)
Q Consensus 139 a~~~~~~~--~~-------~~~~~~~----------------------~~-~~~~~~----------------~~~~~~~ 170 (323)
+.....+. |- +...... .. ..-+.. .......
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 86554311 00 0000000 00 000000 0000000
Q ss_pred --CCCCC------CCCCCCCCCCCCCCCCCCCC-----------------------CCCCCCCcCCC-----CCCcccc-
Q 020632 171 --TADLG------IGSVHMPGMGNSAFNTIGYP-----------------------HTQSHENFDAR-----GGSLITT- 213 (323)
Q Consensus 171 --~~~~g------~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~-----~~~~~~~- 213 (323)
...++ .+....+....+. ...|+. .++++..+++. .++...+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~-g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPI-GVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CcCccccCCCCCcccccccCCccccc-ccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 00000 0000011000000 000110 01111111000 0000000
Q ss_pred ---------ccCCC--CCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec----CCCCCeEEEEecC
Q 020632 214 ---------AKFNN--SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQV 278 (323)
Q Consensus 214 ---------~~~~~--~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~----~~~~g~aFV~F~~ 278 (323)
..+.. +.-.....+.+..+.|||.+||.+..+.||.++|-.||.|...|+.- +.+|.|+||.|+|
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00000 00011124566788999999999999999999999999999998853 4478999999999
Q ss_pred chhhH--HHhhCCceeccCCCCceEEEEcCccc
Q 020632 279 TCVCV--CHILFSLLFKEKLSDGISSNWDQWRL 309 (323)
Q Consensus 279 ~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~~ 309 (323)
..+|+ |.+|||+.|+- ++|+|.+.|.+.
T Consensus 337 p~SaQaAIqAMNGFQIGM---KRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGM---KRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhh---hhhhhhhcCccc
Confidence 99999 99999999988 899999976553
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=3.9e-21 Score=172.28 Aligned_cols=77 Identities=27% Similarity=0.381 Sum_probs=70.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC-------CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN-------KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~-------~g~~l~v~~a 139 (323)
.+.||||-|+..++|.|++++|++||.|++|.|.++ -+.+||||||.|.+.+-|..||+.|| ...+|.|.||
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 589999999999999999999999999999977654 67899999999999999999999999 7789999999
Q ss_pred cCCCc
Q 020632 140 KSNSR 144 (323)
Q Consensus 140 ~~~~~ 144 (323)
..+.+
T Consensus 204 Dtqkd 208 (510)
T KOG0144|consen 204 DTQKD 208 (510)
T ss_pred ccCCC
Confidence 87655
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.6e-21 Score=177.54 Aligned_cols=144 Identities=20% Similarity=0.281 Sum_probs=128.7
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCCc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNSR 144 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~~ 144 (323)
..|||| .+|||..|+++|+.+|++.++++.++. .+.|||||.|.+.++|++||+.+| .|++|+|.|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r--- 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR--- 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc---
Confidence 479999 999999999999999999998887766 499999999999999999999999 999999999742
Q ss_pred ccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCCC
Q 020632 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (323)
+
T Consensus 75 ---d---------------------------------------------------------------------------- 75 (369)
T KOG0123|consen 75 ---D---------------------------------------------------------------------------- 75 (369)
T ss_pred ---C----------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 225 ~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
...|||.||++++|..+|.++|+.||.|..|++.++. ++|| ||+|++.++|. +..|||..+.+ +.|
T Consensus 76 ------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~---kki 145 (369)
T KOG0123|consen 76 ------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNG---KKI 145 (369)
T ss_pred ------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCC---Cee
Confidence 1118999999999999999999999999999997644 5789 99999999999 99999999977 899
Q ss_pred EEEEcCcc
Q 020632 301 SSNWDQWR 308 (323)
Q Consensus 301 ~V~~ak~~ 308 (323)
-|.....+
T Consensus 146 ~vg~~~~~ 153 (369)
T KOG0123|consen 146 YVGLFERK 153 (369)
T ss_pred EEeeccch
Confidence 99876554
No 29
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.4e-21 Score=170.27 Aligned_cols=164 Identities=13% Similarity=0.181 Sum_probs=130.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
-|+||||.|.+.+.|+.|+..|..||+|.++.+.-+ +++++|||||+|+-.+.|+.|++.+| +||.|+|..-..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 388999999999999999999999999999987665 78899999999999999999999999 999998862210
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
............
T Consensus 193 -----mpQAQpiID~vq--------------------------------------------------------------- 204 (544)
T KOG0124|consen 193 -----MPQAQPIIDMVQ--------------------------------------------------------------- 204 (544)
T ss_pred -----CcccchHHHHHH---------------------------------------------------------------
Confidence 000000000000
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec----CCCCCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~----~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
.+...-++|||..+.++++|+||+++|+.||.|+.|++-+ ++.||||||+|.+..+-. +..||=+.|+|
T Consensus 205 ----eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGG- 279 (544)
T KOG0124|consen 205 ----EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG- 279 (544)
T ss_pred ----HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhccc-
Confidence 0000146799999999999999999999999999999954 345799999999998887 99999999977
Q ss_pred CCCceEEEEcC
Q 020632 296 LSDGISSNWDQ 306 (323)
Q Consensus 296 ~g~~l~V~~ak 306 (323)
.-|||.-+-
T Consensus 280 --QyLRVGk~v 288 (544)
T KOG0124|consen 280 --QYLRVGKCV 288 (544)
T ss_pred --ceEeccccc
Confidence 788886543
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=4.9e-21 Score=181.22 Aligned_cols=163 Identities=20% Similarity=0.269 Sum_probs=133.9
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC-----CCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-----QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~-----~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+|||.||+++++.++|..+|...|.|.++.|.... ..+.|||||+|.+.++|++|+..|+ +|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 339999999999999999999999999888766432 2367999999999999999999998 9999999998
Q ss_pred cCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCC
Q 020632 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (323)
..+....-... .
T Consensus 596 ~~k~~~~~gK~----------~---------------------------------------------------------- 607 (725)
T KOG0110|consen 596 ENKPASTVGKK----------K---------------------------------------------------------- 607 (725)
T ss_pred cCccccccccc----------c----------------------------------------------------------
Confidence 61111000000 0
Q ss_pred CCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceec
Q 020632 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFK 293 (323)
Q Consensus 220 ~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~ 293 (323)
.....+..|+|+|||+..+-.+++.||+.||.|+.|+|.... .+|||||+|-+..+|. +.+|.+.-|+
T Consensus 608 ------~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly 681 (725)
T KOG0110|consen 608 ------SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY 681 (725)
T ss_pred ------ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee
Confidence 000115679999999999999999999999999999996542 3689999999999999 9999999999
Q ss_pred cCCCCceEEEEcCcc
Q 020632 294 EKLSDGISSNWDQWR 308 (323)
Q Consensus 294 g~~g~~l~V~~ak~~ 308 (323)
| |.|.++||++-
T Consensus 682 G---RrLVLEwA~~d 693 (725)
T KOG0110|consen 682 G---RRLVLEWAKSD 693 (725)
T ss_pred c---hhhheehhccc
Confidence 8 99999999765
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.5e-20 Score=159.40 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=110.1
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhCCCCeEEEEEccCCCc
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLYIDLAKSNSR 144 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~~g~~l~v~~a~~~~~ 144 (323)
+++-|||||+||+.+|||+-|..||++.|.+.+++|..+ .|+|.|+.....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------hhccccccCccc
Confidence 455699999999999999999999999999988776633 356666644311
Q ss_pred ccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCCC
Q 020632 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (323)
.++...
T Consensus 54 Qsk~t~-------------------------------------------------------------------------- 59 (321)
T KOG0148|consen 54 QSKPTS-------------------------------------------------------------------------- 59 (321)
T ss_pred CCCCcc--------------------------------------------------------------------------
Confidence 111100
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 225 ~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
..+..+||+.|..+++-|+||+.|..||+|.++|++++ ++||||||.|-+.++|+ |..|||..|++ |
T Consensus 60 ----~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~---R 132 (321)
T KOG0148|consen 60 ----NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR---R 132 (321)
T ss_pred ----ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc---c
Confidence 01556999999999999999999999999999999763 57899999999999999 99999999977 9
Q ss_pred ceEEEEcCccc
Q 020632 299 GISSNWDQWRL 309 (323)
Q Consensus 299 ~l~V~~ak~~~ 309 (323)
.||-.||-.|.
T Consensus 133 ~IRTNWATRKp 143 (321)
T KOG0148|consen 133 TIRTNWATRKP 143 (321)
T ss_pred eeeccccccCc
Confidence 99999995553
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=2e-17 Score=159.99 Aligned_cols=75 Identities=19% Similarity=0.350 Sum_probs=69.0
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+||+.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|.+||+.|| +|+.|+|.++..
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 489999999999999999999999999999887764 56789999999999999999999999 999999999875
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
.
T Consensus 284 p 284 (612)
T TIGR01645 284 P 284 (612)
T ss_pred C
Confidence 4
No 33
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=6.7e-19 Score=157.23 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=127.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~ 141 (323)
+.++|||++|+|+++++.|++.|++||+|..+.+..+ +++++||+||+|.+.+...++|.... .|+.|.+..|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 5699999999999999999999999999776665543 67789999999999999888887755 888888876654
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
.....+...
T Consensus 85 r~~~~~~~~----------------------------------------------------------------------- 93 (311)
T KOG4205|consen 85 REDQTKVGR----------------------------------------------------------------------- 93 (311)
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 322111100
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH-HHhhCCceeccCC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV-CHILFSLLFKEKL 296 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~ 296 (323)
....+.|||++|+.++++++|++.|.+||.|.++.++.+ ..++|+||.|.+.++.. +....-+.|.+
T Consensus 94 ------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~g-- 165 (311)
T KOG4205|consen 94 ------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNG-- 165 (311)
T ss_pred ------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecC--
Confidence 001567999999999999999999999998888877543 35789999999999999 77777777754
Q ss_pred CCceEEEEcCcc
Q 020632 297 SDGISSNWDQWR 308 (323)
Q Consensus 297 g~~l~V~~ak~~ 308 (323)
+.+.|.-|-.+
T Consensus 166 -k~vevkrA~pk 176 (311)
T KOG4205|consen 166 -KKVEVKRAIPK 176 (311)
T ss_pred -ceeeEeeccch
Confidence 66666666444
No 34
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.3e-18 Score=158.93 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=133.8
Q ss_pred eEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCCcc
Q 020632 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNSRS 145 (323)
Q Consensus 70 tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~~~ 145 (323)
.|||.||+.+++..+|+++|+.||+|.+|++..+...++|| ||+|++.++|++|++.+| .|+.|.|.....+...
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 39999999999999999999999999999988876669999 999999999999999999 9999999877544332
Q ss_pred cCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCCCC
Q 020632 146 KRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGP 225 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (323)
.+......
T Consensus 157 ~~~~~~~~------------------------------------------------------------------------ 164 (369)
T KOG0123|consen 157 EAPLGEYK------------------------------------------------------------------------ 164 (369)
T ss_pred cccccchh------------------------------------------------------------------------
Confidence 21111000
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 226 KNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 226 ~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
..-..+||.|+..++++++|.++|+.||.|..+.++.+ +.++|+||.|++.++|. +..|||..+.+ ..+
T Consensus 165 ---~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~---~~~ 238 (369)
T KOG0123|consen 165 ---KRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGD---KEL 238 (369)
T ss_pred ---hhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCc---cce
Confidence 00234899999999999999999999999999999763 35789999999999999 99999999965 788
Q ss_pred EEEEcCcc
Q 020632 301 SSNWDQWR 308 (323)
Q Consensus 301 ~V~~ak~~ 308 (323)
.|.-+.++
T Consensus 239 ~V~~aqkk 246 (369)
T KOG0123|consen 239 YVGRAQKK 246 (369)
T ss_pred eecccccc
Confidence 88877654
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=9.2e-19 Score=161.85 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=135.4
Q ss_pred CCCCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEE
Q 020632 63 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYID 137 (323)
Q Consensus 63 ~~~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~ 137 (323)
..+.+.||||+--|...+++.+|+++|+.+|.|..|.+..+ .+.++|.|||+|.|.++...||.+-+ .|.+|.|+
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 44566799999999999999999999999999998887765 56789999999999999999996665 88888887
Q ss_pred EccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCC
Q 020632 138 LAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (323)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (323)
........ ......+ ..+.+
T Consensus 254 ~sEaeknr--~a~~s~a------------------~~~k~---------------------------------------- 273 (549)
T KOG0147|consen 254 LSEAEKNR--AANASPA------------------LQGKG---------------------------------------- 273 (549)
T ss_pred ccHHHHHH--HHhcccc------------------ccccc----------------------------------------
Confidence 65322111 0000000 00000
Q ss_pred CCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec----CCCCCeEEEEecCchhhH--HHhhCCce
Q 020632 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQVTCVCV--CHILFSLL 291 (323)
Q Consensus 218 ~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~----~~~~g~aFV~F~~~~~A~--~~~lnG~~ 291 (323)
-..+-..|||+||++++||++|+.+|+.||.|..|.+.. +.++|||||+|.+.++|. +..|||++
T Consensus 274 ---------~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe 344 (549)
T KOG0147|consen 274 ---------FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE 344 (549)
T ss_pred ---------cccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce
Confidence 000123399999999999999999999999999998854 347899999999999999 89999999
Q ss_pred eccCCCCceEEEEcCcc
Q 020632 292 FKEKLSDGISSNWDQWR 308 (323)
Q Consensus 292 l~g~~g~~l~V~~ak~~ 308 (323)
|.| +.|+|..-..+
T Consensus 345 lAG---r~ikV~~v~~r 358 (549)
T KOG0147|consen 345 LAG---RLIKVSVVTER 358 (549)
T ss_pred ecC---ceEEEEEeeee
Confidence 977 99999875443
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=8.3e-17 Score=129.53 Aligned_cols=166 Identities=23% Similarity=0.352 Sum_probs=120.1
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.++|||+|||.++.|.||.+||.+||.|..|.|+... ..-+||||+|++..+|+.||..-+ +|..|+|+++....
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 4899999999999999999999999999988887432 346799999999999999998887 99999999986432
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
.....+.. +...|.+ ....+ ...+-++
T Consensus 85 ~s~~~~G~-------------------y~gggrg--Ggg~g-----g~rgpps--------------------------- 111 (241)
T KOG0105|consen 85 SSSDRRGS-------------------YSGGGRG--GGGGG-----GRRGPPS--------------------------- 111 (241)
T ss_pred cccccccc-------------------cCCCCCC--CCCCC-----cccCCcc---------------------------
Confidence 11100000 0000000 00000 0000000
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
--....|.|.+||.+-+|+||++...+-|+|....+.++ |++.|+|...|+-. +..|....+..
T Consensus 112 ----rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 112 ----RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ----cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccC
Confidence 001456999999999999999999999999998888763 48889998888887 77777777755
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=3.6e-16 Score=148.56 Aligned_cols=197 Identities=21% Similarity=0.224 Sum_probs=131.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.+.++|+|||..+..++|..+|..||.|..+.|...+ . -+.|+|.+..+|..|+..|. ...+|.+.|+....
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G--~--~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG--T--GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecCccc--c--eeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 4788999999999999999999999999988665321 1 29999999999999999999 77788888886543
Q ss_pred cccCCCCCCCCc-cCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCC
Q 020632 144 RSKRSRTDDEWT-GSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (323)
Q Consensus 144 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
............ ............. ...+....... .....++..
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~-s~~d~~v~eD~---------------------------------d~te~ss~a 506 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERV-SAEDGQVEEDK---------------------------------DPTEESSLA 506 (725)
T ss_pred ccCCccccccccccccccccCcceec-ccccccccccC---------------------------------Cccccccch
Confidence 321111111100 0000000000000 00000000000 000000000
Q ss_pred CCCCCCCCcCe-EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-------CCCeEEEEecCchhhH--HHhhCCcee
Q 020632 223 SGPKNVTPCAT-LFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-------GPPVAFVDFQVTCVCV--CHILFSLLF 292 (323)
Q Consensus 223 ~~~~~~~~~~t-LfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-------~~g~aFV~F~~~~~A~--~~~lnG~~l 292 (323)
.. .+.....| |||.||.+++|.++|..+|...|.|..+.|...+ +.|||||+|.+.++|+ +..|||+.|
T Consensus 507 ~~-a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl 585 (725)
T KOG0110|consen 507 RV-AEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL 585 (725)
T ss_pred hh-hhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee
Confidence 00 11111223 9999999999999999999999999999986544 2499999999999999 999999999
Q ss_pred ccCCCCceEEEEcC
Q 020632 293 KEKLSDGISSNWDQ 306 (323)
Q Consensus 293 ~g~~g~~l~V~~ak 306 (323)
||+.|.|+++.
T Consensus 586 ---dGH~l~lk~S~ 596 (725)
T KOG0110|consen 586 ---DGHKLELKISE 596 (725)
T ss_pred ---cCceEEEEecc
Confidence 66999999997
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=1e-15 Score=136.89 Aligned_cols=187 Identities=19% Similarity=0.269 Sum_probs=136.7
Q ss_pred cceEEEeCCC-CCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLP-EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp-~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
+..|.|.||. ..+|.+.|..+|.-||.|..|.|..+++ .. |.|+|.|...|+.|++.|+ .|+.|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~--ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DN--ALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cc--eeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 5889999995 5799999999999999999998886644 44 9999999999999999999 8999999998765
Q ss_pred Cc-ccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 143 SR-SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 143 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
.- .++.+..+. +...++..+-...+ .....
T Consensus 374 ~vqlp~egq~d~------------glT~dy~~spLhrf-------------------------------------kkpgs 404 (492)
T KOG1190|consen 374 NVQLPREGQEDQ------------GLTKDYGNSPLHRF-------------------------------------KKPGS 404 (492)
T ss_pred cccCCCCCCccc------------cccccCCCCchhhc-------------------------------------cCccc
Confidence 43 222211110 00001111100000 00000
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCc
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDG 299 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~ 299 (323)
..-....+++.+|...|+|.+++||+|+++|..-|........-.+.+.+|.+++++.|+|. +..|+.+.++++ .-
T Consensus 405 KN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen--~h 482 (492)
T KOG1190|consen 405 KNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGEN--HH 482 (492)
T ss_pred ccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCC--ce
Confidence 00012235689999999999999999999999998865544443344579999999999999 999999999874 79
Q ss_pred eEEEEcCcc
Q 020632 300 ISSNWDQWR 308 (323)
Q Consensus 300 l~V~~ak~~ 308 (323)
|||+|+|+.
T Consensus 483 lRvSFSks~ 491 (492)
T KOG1190|consen 483 LRVSFSKST 491 (492)
T ss_pred EEEEeeccc
Confidence 999999875
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.69 E-value=2.6e-16 Score=145.74 Aligned_cols=218 Identities=17% Similarity=0.213 Sum_probs=135.2
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
+.||||||-++++|++|+.+|+.||.|+.|++..+ ++.++|||||+|.+.++|.+|++.|| .|+.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 55999999999999999999999999999988776 78899999999999999999999999 9999999877554
Q ss_pred CcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCC-C-----CCCCCC---CCCCC--CCCCCCCCCCCCcCCCCCCcc
Q 020632 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGS-V-----HMPGMG---NSAFN--TIGYPHTQSHENFDARGGSLI 211 (323)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-----~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~ 211 (323)
...+..... ..+.......++ ..|.+. . ..+... ...++ ........... .....
T Consensus 359 ~~~~~a~~~----~~d~D~~d~~gl-----~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~-----~~~~~ 424 (549)
T KOG0147|consen 359 VDTKEAAVT----QFDFDEDDRQGL-----SLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAA-----QFNGV 424 (549)
T ss_pred ccccccccc----ccccchhhcccc-----ccccccHHHHHHHHhccCCccccchhhhHHHhccccchHH-----hhcCC
Confidence 432222000 000000000000 000000 0 000000 00000 00000000000 00000
Q ss_pred ccccCCCCCCCCCCCCCCCcCeEEEcCCCC-------CCC---HHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchh
Q 020632 212 TTAKFNNSSAPSGPKNVTPCATLFVANLGP-------TCT---EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCV 281 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~-------~~t---e~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~ 281 (323)
. ......++...|.-+.++.++.+.|+=. +++ .|++.+-+++||+|..|.+.++. .|+-||.|.+.+.
T Consensus 425 ~-~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-~g~VYvrc~s~~~ 502 (549)
T KOG0147|consen 425 V-RVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-AGCVYVRCPSAEA 502 (549)
T ss_pred c-CccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-CceEEEecCcHHH
Confidence 0 0000111111223335577788888731 111 25788888999999999988744 4999999999999
Q ss_pred hH--HHhhCCceeccCCCCceEEEEc
Q 020632 282 CV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 282 A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
|. +.+|||.++.| +-|...|=
T Consensus 503 A~~a~~alhgrWF~g---r~Ita~~~ 525 (549)
T KOG0147|consen 503 AGTAVKALHGRWFAG---RMITAKYL 525 (549)
T ss_pred HHHHHHHHhhhhhcc---ceeEEEEe
Confidence 99 99999999965 99999884
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=2.3e-16 Score=127.38 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=69.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.++|||+||++++||++|+++|++||.|++|+++.+ .++|||||+|++.++|+ +..|||..|.+ +.|+|+|
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G---r~l~V~~ 110 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG---RHIRVNP 110 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEe
Confidence 677999999999999999999999999999999754 35799999999999999 88999999966 9999999
Q ss_pred cCccc
Q 020632 305 DQWRL 309 (323)
Q Consensus 305 ak~~~ 309 (323)
++.+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97653
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.67 E-value=3.2e-15 Score=133.73 Aligned_cols=215 Identities=15% Similarity=0.125 Sum_probs=136.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (323)
..-.++|.|+-+-|+-+-|.++|++||.|..+.-..++..-+ |.|+|.|.+.|+.|..+|. +.+.|+|.|++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQ--ALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQ--ALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchh--hhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 346778999999999999999999999987765444433233 9999999999999999997 66788888876
Q ss_pred CCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCcCCCCCCccccccCCCC
Q 020632 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTI-GYPHTQSHENFDARGGSLITTAKFNNS 219 (323)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (323)
-.....+-..+.. ++....+...|. ..|.......... +.+...... .+............
T Consensus 227 lt~LnvKynndkS-----------RDyTnp~LP~gd---~~p~l~~~~~aa~~~~~~~~g~p----~aip~~~~~a~~a~ 288 (492)
T KOG1190|consen 227 LTDLNVKYNNDKS-----------RDYTNPDLPVGD---GQPSLDQLMAAAFGSVPAVHGAP----LAIPSGAAGANAAD 288 (492)
T ss_pred cccceeecccccc-----------ccccCCCCCCCc---cccccchhhhccccccccccCCc----ccCCccchhhcccc
Confidence 4332111111111 111111111110 0111000000000 000000000 00000000000000
Q ss_pred CCCCCCCCCCCcCeEEEcCCC-CCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCC
Q 020632 220 SAPSGPKNVTPCATLFVANLG-PTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKL 296 (323)
Q Consensus 220 ~~~~~~~~~~~~~tLfV~nLp-~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~ 296 (323)
.+...+. .+.+|.|.||. ..+|.+-|..+|+.||+|.+|+|..+++ .-|.|+|.|...|+ ++.|+|..|+|
T Consensus 289 ~~~~~~~---~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~g-- 362 (492)
T KOG1190|consen 289 GKIESPS---ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYG-- 362 (492)
T ss_pred cccccCC---CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecC--
Confidence 1111111 15778999997 5899999999999999999999998554 89999999999999 99999999998
Q ss_pred CCceEEEEcCcc
Q 020632 297 SDGISSNWDQWR 308 (323)
Q Consensus 297 g~~l~V~~ak~~ 308 (323)
+.|||.|+|..
T Consensus 363 -k~lrvt~SKH~ 373 (492)
T KOG1190|consen 363 -KKLRVTLSKHT 373 (492)
T ss_pred -ceEEEeeccCc
Confidence 99999999876
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=1.1e-15 Score=123.41 Aligned_cols=77 Identities=21% Similarity=0.353 Sum_probs=69.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
...++|||+||+++++|++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++||+.|+ .|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34589999999999999999999999999988877654 56789999999999999999999998 8999999998
Q ss_pred cCC
Q 020632 140 KSN 142 (323)
Q Consensus 140 ~~~ 142 (323)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 654
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6.7e-16 Score=130.04 Aligned_cols=159 Identities=20% Similarity=0.292 Sum_probs=119.6
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCCc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNSR 144 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~~ 144 (323)
..|||++|++.+.+.+|..||..||.+..+.++ .||+||+|.+..+|+.|+..++ .|..+.|+|++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 579999999999999999999999998888766 4578999999999999999998 555577877764322
Q ss_pred cc-CCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 145 SK-RSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 145 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
.. ..... .+... ..... .+
T Consensus 76 ~~g~~~~g-~r~~~------------------~~~~~-------------~p---------------------------- 95 (216)
T KOG0106|consen 76 GRGRPRGG-DRRSD------------------SRRYR-------------PP---------------------------- 95 (216)
T ss_pred ccCCCCCC-Cccch------------------hhccC-------------Cc----------------------------
Confidence 11 00000 00000 00000 00
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.-....|+|.||...+.+++|++.|+.+|.+....+ ..+++||+|++.++|. +..|+|..|.+ +.|.
T Consensus 96 ----~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~---~~l~ 164 (216)
T KOG0106|consen 96 ----SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNG---RRIS 164 (216)
T ss_pred ----ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcC---ceee
Confidence 001566999999999999999999999999855544 3489999999999999 99999999977 8888
Q ss_pred EEE
Q 020632 302 SNW 304 (323)
Q Consensus 302 V~~ 304 (323)
+.+
T Consensus 165 ~~~ 167 (216)
T KOG0106|consen 165 VEK 167 (216)
T ss_pred ecc
Confidence 854
No 44
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=126.62 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=73.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
+.-++|+|+|||+...|-||+.+|.+||.|.+|.|..+.+.++|||||+|++.++|++|.+.|| .||+|+|..|..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4458999999999999999999999999999999999888899999999999999999999999 999999999865
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
...
T Consensus 174 rV~ 176 (376)
T KOG0125|consen 174 RVH 176 (376)
T ss_pred hhc
Confidence 533
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.58 E-value=1.8e-13 Score=123.46 Aligned_cols=218 Identities=20% Similarity=0.214 Sum_probs=132.3
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhc-CCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~-~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
...|.+||.|||+++.+.+|++||.. .|+|+.|.|..+ .++.+|||.|+|++.|.+++|++.|| .||+|.|.-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 34578999999999999999999985 677999987765 68899999999999999999999999 9999998754
Q ss_pred cCCCcccC-----CCCCCCCc-----cCCcCCCCC--------CCCCCCCCC--CC-CCCCCCCCCCCCCCCCCCCCCCC
Q 020632 140 KSNSRSKR-----SRTDDEWT-----GSDKKARGP--------SAFSRGTAD--LG-IGSVHMPGMGNSAFNTIGYPHTQ 198 (323)
Q Consensus 140 ~~~~~~~~-----~~~~~~~~-----~~~~~~~~~--------~~~~~~~~~--~g-~~~~~~~~~~~~~~~~~~~~~~~ 198 (323)
......++ ........ .-.+.+... +.++..+.+ +. .....+.+.-....++.-|-..
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~- 200 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS- 200 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch-
Confidence 32211111 10000000 000000000 000000000 00 0000000000000000000000
Q ss_pred CCCCcCCCCCCccccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEE
Q 020632 199 SHENFDARGGSLITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVD 275 (323)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~ 275 (323)
..+..+... ...+.+..+||.||.+.+....|++.|.--|.|+.|.+..+ .++|++.++
T Consensus 201 ---------------~~Flr~~h~---f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~ 262 (608)
T KOG4212|consen 201 ---------------ASFLRSLHI---FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIE 262 (608)
T ss_pred ---------------hhhhhhccC---CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEE
Confidence 000000000 12234778999999999999999999999999998887432 357899999
Q ss_pred ecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 276 FQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 276 F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
|++.-+|. |..|++.-+.+ +++.+.+.
T Consensus 263 y~hpveavqaIsml~~~g~~~---~~~~~Rl~ 291 (608)
T KOG4212|consen 263 YDHPVEAVQAISMLDRQGLFD---RRMTVRLD 291 (608)
T ss_pred ecchHHHHHHHHhhccCCCcc---ccceeecc
Confidence 99998888 77777655554 77777764
No 46
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.55 E-value=1.9e-14 Score=132.27 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 227 ~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
.....++|||+|||+++||++|+++|+.||.|++|+|+.+ .++|||||+|.+.++|. ++.|||..|.+ +.|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g---r~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN---KRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC---cee
Confidence 3345789999999999999999999999999999999754 35689999999999999 88999999976 999
Q ss_pred EEEEcCcc
Q 020632 301 SSNWDQWR 308 (323)
Q Consensus 301 ~V~~ak~~ 308 (323)
+|+|++..
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99998754
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=1.2e-14 Score=102.44 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=58.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 234 LFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 234 LfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
|||+|||.++|+++|+++|++||.|..+++..+ ..+++|||+|++.++|. ++.|||..|.+ +.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~---~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING---RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc---cCcC
Confidence 799999999999999999999999999999773 34679999999999999 88899999966 6664
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.54 E-value=2.1e-12 Score=114.66 Aligned_cols=230 Identities=17% Similarity=0.147 Sum_probs=140.9
Q ss_pred CcceEEE--eCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEE
Q 020632 67 EVRTLFV--AGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV--~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~ 138 (323)
.++.|.+ -|--+.+|.+-|+.++...|.|..|.|..++ .-+ |.|+|++.+.|++|.++|| +-.+|+|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-gVQ--AmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-GVQ--AMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-cee--eEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 3455544 4555789999999999999998877666442 123 9999999999999999999 778999999
Q ss_pred ccCCCcccCCCCCCCCccCCcCCCCCCCCCCC-C---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CcCCCCCCcc
Q 020632 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRG-T---ADLGIGSVHMPGMGNSAFNTIGYPHTQSHE---NFDARGGSLI 211 (323)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 211 (323)
|+...........+.|.-.....+...+.... + .....-..+...+... ..+|.+.--.+ ..+.+.....
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~---h~~y~sg~~~~p~~~~P~r~~~~~ 272 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGG---HSGYYSGDRHGPPHPPPSRYRDGY 272 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCC---CCCCcccccCCCCCCCCCCCcccc
Confidence 98765522222223343211111111000000 0 0000011111111100 01111100000 0000000000
Q ss_pred ccccCCCCCCCCCCCCCCCcCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhC
Q 020632 212 TTAKFNNSSAPSGPKNVTPCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILF 288 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~ln 288 (323)
. ... ....+....+..++.|.+|.. .++-+.|..+|+.||.|.+|++++.+ .|.|.|++.|..+.+ +..||
T Consensus 273 ~---~~~--g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~gtamVemgd~~aver~v~hLn 346 (494)
T KOG1456|consen 273 R---DGR--GYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-PGTAMVEMGDAYAVERAVTHLN 346 (494)
T ss_pred c---cCC--CCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-cceeEEEcCcHHHHHHHHHHhc
Confidence 0 000 011223445688999999985 67889999999999999999999744 499999999999888 99999
Q ss_pred CceeccCCCCceEEEEcCccccc
Q 020632 289 SLLFKEKLSDGISSNWDQWRLRS 311 (323)
Q Consensus 289 G~~l~g~~g~~l~V~~ak~~~~~ 311 (323)
+..|.| ..|.|-++|...-.
T Consensus 347 n~~lfG---~kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 347 NIPLFG---GKLNVCVSKQNFVS 366 (494)
T ss_pred cCcccc---ceEEEeeccccccc
Confidence 999977 89999998776443
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=2.5e-14 Score=100.74 Aligned_cols=65 Identities=32% Similarity=0.539 Sum_probs=58.7
Q ss_pred EEEeCCCCCCchHHHHHHhhcCCCceEEEecc-CCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEE
Q 020632 71 LFVAGLPEDVKPREIYNLFREFPGYESSHLRS-STQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (323)
Q Consensus 71 lfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~ 135 (323)
|||+|||.++++++|+++|++||.+..+.+.. ..+..+|||||+|.+.++|++|++.++ .|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999998888877 466788999999999999999999997 666654
No 50
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.1e-14 Score=109.05 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=65.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+|||||||.+.++|++|.+||+++|.|..|+|-.+ +..-.|||||+|.+.++|+.||..++ +.++|++.|.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 599999999999999999999999999988876443 56678999999999999999999999 8999999885
No 51
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.52 E-value=2.4e-13 Score=119.60 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=127.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCce--------EEEecc-CCCCCCceEEEEEccHHHHHHHHHHhC----CCCeE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYE--------SSHLRS-STQNSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~--------~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l 134 (323)
+..|||+|||.++|.+|+.++|++||-|. .|.|-. +.+.-+|=|.+.|...++.+.|+..|+ .|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 46799999999999999999999999852 233332 345667889999999999999999999 99999
Q ss_pred EEEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccc
Q 020632 135 YIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTA 214 (323)
Q Consensus 135 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (323)
+|+.|+-+........... ....+..++..... ....+ .....
T Consensus 214 rVerAkfq~Kge~~~~~k~-k~k~~~~kk~~k~q----~k~~d----------------w~pd~---------------- 256 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKE-KGKCKDKKKLKKQQ----QKLLD----------------WRPDR---------------- 256 (382)
T ss_pred EEehhhhhhccCcCccccc-ccccccHHHHHHHH----Hhhcc----------------cCCCc----------------
Confidence 9999875543111111000 00000000000000 00000 00000
Q ss_pred cCCCCCCCCCCCCCCCcCeEEEcCCC----CCCC-------HHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH
Q 020632 215 KFNNSSAPSGPKNVTPCATLFVANLG----PTCT-------EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV 283 (323)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~tLfV~nLp----~~~t-------e~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~ 283 (323)
..+.-....+||.|+||= ...+ +++|++-+++||.|..|.+..+...|.+-|.|.|.++|.
T Consensus 257 --------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 257 --------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEAD 328 (382)
T ss_pred --------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHH
Confidence 000000016789999983 3334 456778899999999999987677799999999999999
Q ss_pred --HHhhCCceeccCCCCceEEEEcC
Q 020632 284 --CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 284 --~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
+..|+|+.+.| |.|.-+...
T Consensus 329 ~ciq~m~GR~fdg---Rql~A~i~D 350 (382)
T KOG1548|consen 329 QCIQTMDGRWFDG---RQLTASIWD 350 (382)
T ss_pred HHHHHhcCeeecc---eEEEEEEeC
Confidence 99999999954 898877543
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=4.8e-14 Score=121.95 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=67.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEcCc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
.++|||+||++++||++|+++|+.||.|++|+|..++ .+|||||+|.+.++|. ...|||..|.+ +.|+|+++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~g---r~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVD---QSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCC---ceEEEEeccC
Confidence 5789999999999999999999999999999998754 4689999999999999 44699999966 9999999864
No 53
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=3e-14 Score=119.32 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=66.7
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (323)
..-.+||||+|+|+++.++|+++|++||+|+...+..+ +++++|||||+|.|.++|++|++.-+ +||+-.|++|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 34588999999999999999999999999765544433 78899999999999999999999998 99999999886
Q ss_pred C
Q 020632 141 S 141 (323)
Q Consensus 141 ~ 141 (323)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.8e-14 Score=111.68 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=68.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
.+.|||+||+..+++.||+.+|..||.|..|.|-. .-.|||||+|++..+|. +..|+|+.| +|..|+|+++...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~---cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDI---CGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccc---cCceEEEEeecCC
Confidence 56799999999999999999999999999999976 44599999999999999 999999999 4489999998766
Q ss_pred cc
Q 020632 309 LR 310 (323)
Q Consensus 309 ~~ 310 (323)
.+
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 44
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.4e-13 Score=120.28 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=70.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec--CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS--TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~--~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
-++|+|.|||+...|-||+.+|.+||.|.+|.|+- +++||||||+|++.+||+ ..+|||..|.| |+|.|.-|-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG---RkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG---RKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec---eEEEEeccc
Confidence 46799999999999999999999999999999974 346899999999999999 99999999965 999999987
Q ss_pred cccccc
Q 020632 307 WRLRSW 312 (323)
Q Consensus 307 ~~~~~~ 312 (323)
.+.-.+
T Consensus 173 arV~n~ 178 (376)
T KOG0125|consen 173 ARVHNK 178 (376)
T ss_pred hhhccC
Confidence 764333
No 56
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.5e-13 Score=117.49 Aligned_cols=72 Identities=25% Similarity=0.327 Sum_probs=64.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+||++.++|++|+++|+.||.|+.|.|..+. ..+|||||+|.+.++|+.||. |+ .|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~-~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN-ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 4899999999999999999999999999999987654 357899999999999999996 66 999999998753
No 57
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=99.71 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=66.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE-ecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKI-QSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i-~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
++.|||+|||+++|.|++.++|.+||.|..||| .+...+|.|||.|++..+|. +..|+|..+.+ +-|.|-|-.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~---ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN---RYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC---ceEEEEecC
Confidence 778999999999999999999999999999999 44456799999999999999 99999999955 999999853
No 58
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=1.8e-13 Score=125.20 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=68.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCc--hhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVT--CVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~--~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
.-+||||||++++|+++|+.+|+.||.|.+|.|++...+|||||+|.+. .++. |..|||..+.| +.|+|+-||
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG---R~LKVNKAK 86 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG---GRLRLEKAK 86 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC---ceeEEeecc
Confidence 5679999999999999999999999999999999777789999999987 3344 99999999987 999999998
Q ss_pred cc
Q 020632 307 WR 308 (323)
Q Consensus 307 ~~ 308 (323)
..
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 76
No 59
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=116.62 Aligned_cols=139 Identities=27% Similarity=0.386 Sum_probs=101.0
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+||+.++++++|+++|..||.+..+.+..+ .+..+|||||+|.+.++|..|+..++ .|+.|+|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999977777654 57899999999999999999999999 999999998753
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
....+............... .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------~ 215 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKL-----------------------------------------------------------S 215 (306)
T ss_pred ccccccccccccchhhhccc-----------------------------------------------------------c
Confidence 00000000000000000000 0
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS 265 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~ 265 (323)
............+++.|++..++..++..+|..+|.+....+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 216 RGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 00000111256699999999999999999999999997777654
No 60
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.8e-13 Score=113.17 Aligned_cols=78 Identities=29% Similarity=0.412 Sum_probs=70.2
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
+++.++|=|.||+.+++|++|++||..||.|..+.|.++ ++.++|||||+|.+.++|.+||+.|| +.=.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 456789999999999999999999999999988877654 78899999999999999999999999 667889999
Q ss_pred ccCC
Q 020632 139 AKSN 142 (323)
Q Consensus 139 a~~~ 142 (323)
++.+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9764
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1e-11 Score=109.97 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=67.3
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
-.+|||..+..+.+|++|+.+|+.||+|..|.|-+. ++.++||+|++|.+..+-..|+..+| +|+-|+|..+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 378999999999999999999999999999998765 56789999999999999999999999 899999976643
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.42 E-value=4.8e-12 Score=116.27 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=111.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEccCCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKSNS 143 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~~~ 143 (323)
+..-|=+++|||++|++||.++|+.++ |+.+.+.+.+++..|=|||+|.+.+++++|++... ..+-|.|--+....
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence 346677899999999999999999987 67777776767788899999999999999999887 55666664332111
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
. .| ..+..
T Consensus 88 ~--------d~--~~~~~-------------------------------------------------------------- 95 (510)
T KOG4211|consen 88 A--------DW--VMRPG-------------------------------------------------------------- 95 (510)
T ss_pred c--------cc--cccCC--------------------------------------------------------------
Confidence 0 00 00000
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEE---ecCCCCCeEEEEecCchhhH-HHhhCCceeccCCCC
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLK-LKI---QSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSD 298 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~-v~i---~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~ 298 (323)
.+.......+|-+++||+.||++||.++|+-.--+.. +-+ .+.+..|-|||+|++.+.|+ ...-|-..|+. |
T Consensus 96 g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGh---R 172 (510)
T KOG4211|consen 96 GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGH---R 172 (510)
T ss_pred CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhcc---c
Confidence 0000012556899999999999999999998633333 212 23334679999999999999 55555556644 5
Q ss_pred ceEEEE
Q 020632 299 GISSNW 304 (323)
Q Consensus 299 ~l~V~~ 304 (323)
-|.|--
T Consensus 173 YIEvF~ 178 (510)
T KOG4211|consen 173 YIEVFR 178 (510)
T ss_pred eEEeeh
Confidence 555543
No 63
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.8e-13 Score=108.54 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=67.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCC-CCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG-PPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~-~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
.++|||+|||.++.|.||.+||.+||.|.+|.|..... .+||||+|++..+|+ |..-+|..+ ||+.|+|+|++.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy---dg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY---DGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccccccc---CcceEEEEeccC
Confidence 67899999999999999999999999999999965443 579999999999999 999999999 669999999865
Q ss_pred c
Q 020632 308 R 308 (323)
Q Consensus 308 ~ 308 (323)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.5e-13 Score=111.77 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=69.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
..++|-|.||+.+++|++|++||..||.|.+|.|.+++ ++|||||+|.+.++|+ |..|||+-+.. -.|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~---LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN---LILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce---EEEEEE
Confidence 57789999999999999999999999999999996544 6899999999999999 99999999966 799999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
|+|.+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99764
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.1e-12 Score=120.29 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=68.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccH--HHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ--QSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~--~~A~~A~~~l~----~g~~l~v~~a 139 (323)
....+||||||.+.+++++|+.+|+.||.|..|.|.+.++ +|||||+|.+. .++.+||+.|| .|+.|+|+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 3458999999999999999999999999999998885544 99999999987 78999999999 9999999999
Q ss_pred cCCC
Q 020632 140 KSNS 143 (323)
Q Consensus 140 ~~~~ 143 (323)
+..-
T Consensus 86 KP~Y 89 (759)
T PLN03213 86 KEHY 89 (759)
T ss_pred cHHH
Confidence 7653
No 66
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.6e-12 Score=110.80 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=65.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEcC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
..||||+||++.+||++|+++|+.||.|.+|+|++++ .++||||+|.+.++|. ...|||..|.+ +.|.|.-.-
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d---~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVD---QRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCC---ceEEEEeCc
Confidence 6789999999999999999999999999999998755 3579999999999999 88999999976 889888643
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=9.3e-13 Score=100.13 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=63.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
++||||+||++.++||+|.+||+++|+|+.|-+--++ --||+||+|.+.++|. +.-+||..|-. +.|+|.|
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd---r~ir~D~ 112 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD---RPIRIDW 112 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc---cceeeec
Confidence 7899999999999999999999999999998772111 2379999999999999 99999999955 9999998
Q ss_pred c
Q 020632 305 D 305 (323)
Q Consensus 305 a 305 (323)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.3e-12 Score=104.68 Aligned_cols=74 Identities=26% Similarity=0.407 Sum_probs=65.5
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.+.||||||+..+++.||+.+|..||.+.+|-|-. .--|||||+|++..+|+.|+..|+ .|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 59999999999999999999999999988877664 345799999999999999999998 78889999986544
Q ss_pred c
Q 020632 144 R 144 (323)
Q Consensus 144 ~ 144 (323)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=1.5e-12 Score=91.95 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=55.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 234 LFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 234 LfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
|||+|||+++|+++|+++|+.||.|..+++...+ .+++|||+|.+.++|. +..++|..|.| +.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g---~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG---RKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC---EEcC
Confidence 7999999999999999999999999999998754 3689999999999999 77888899955 6553
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=2.1e-12 Score=91.15 Aligned_cols=64 Identities=30% Similarity=0.510 Sum_probs=54.5
Q ss_pred EEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeE
Q 020632 71 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (323)
Q Consensus 71 lfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l 134 (323)
|||+|||+++++++|+++|+.||.|..+.+..+ .+..+|+|||+|.+.++|.+|++.++ +|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 799999999999999999999999988877654 34567899999999999999999997 66655
No 71
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.36 E-value=7e-12 Score=111.35 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=119.5
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEecc-CCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEccC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS-STQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKS 141 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~ 141 (323)
-.|.|++|-..++|.+|.+..+.||.|..+.... +++ |.|+|+|.+.|++|+...- .|+.-.+.++.+
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~-----alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySts 106 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQ-----ALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTS 106 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEeccccce-----eeeeeccccchhhheehhccCcccccCchhhcccchh
Confidence 6799999999999999999999999987665543 334 9999999999999876542 333333333322
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
+.. .|.+.+
T Consensus 107 q~i-~R~g~e---------------------------------------------------------------------- 115 (494)
T KOG1456|consen 107 QCI-ERPGDE---------------------------------------------------------------------- 115 (494)
T ss_pred hhh-ccCCCC----------------------------------------------------------------------
Confidence 211 111110
Q ss_pred CCCCCCCCCcCeEEEc--CCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 222 PSGPKNVTPCATLFVA--NLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~--nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
...++++|.+. |--+.+|.+-|..++...|.|.+|.|+++ ..-.|.|+|++.+.|+ ..+|||..|+. .+
T Consensus 116 -----s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYs-GC 188 (494)
T KOG1456|consen 116 -----SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYS-GC 188 (494)
T ss_pred -----CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccc-cc
Confidence 00125666544 44478999999999999999999999885 3358999999999999 99999999998 78
Q ss_pred CceEEEEcCcc
Q 020632 298 DGISSNWDQWR 308 (323)
Q Consensus 298 ~~l~V~~ak~~ 308 (323)
+.|+|+|||..
T Consensus 189 CTLKIeyAkP~ 199 (494)
T KOG1456|consen 189 CTLKIEYAKPT 199 (494)
T ss_pred eeEEEEecCcc
Confidence 99999999876
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=9.5e-11 Score=106.17 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=63.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..++|||+|||.++||+.|++-|..||.|..+.|+... +..+.|.|.+.++|+ +..|||..| ||+.|+|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~G-kskGVVrF~s~edAEra~a~Mngs~l---~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENG-KSKGVVRFFSPEDAERACALMNGSRL---DGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccC-CccceEEecCHHHHHHHHHHhccCcc---cCceeeeeeC
Confidence 46779999999999999999999999999999996533 345699999999999 999999999 5599999984
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=9.1e-12 Score=91.28 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=66.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
+.++-|||+|||+++|.++..++|.+||.|..++|-- ....+|-|||.|++..+|.+|++.|+ .++-|.|-+-..
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~-~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN-TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecC-ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 3459999999999999999999999999998887653 34568889999999999999999998 889999987654
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 74
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=1.7e-12 Score=106.62 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEe----cCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQ----STYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~----~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.-.+|-|-||.+.+|-++|+.+|++||.|-+|.|- ++..+|||||.|.+..+|+ +++|+|.+| ||+.|+|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---dgRelrVq 88 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---DGRELRVQ 88 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee---ccceeeeh
Confidence 35679999999999999999999999999999994 4456899999999999999 999999999 66999999
Q ss_pred EcCcccc
Q 020632 304 WDQWRLR 310 (323)
Q Consensus 304 ~ak~~~~ 310 (323)
+|+....
T Consensus 89 ~arygr~ 95 (256)
T KOG4207|consen 89 MARYGRP 95 (256)
T ss_pred hhhcCCC
Confidence 9987633
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=5.7e-12 Score=88.26 Aligned_cols=67 Identities=30% Similarity=0.366 Sum_probs=60.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
+|||+|||..+++++|+++|++||.|..+++.... .+++|||+|.+.++|. +..|+|..+.+ +.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~---~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG---RPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC---EEEee
Confidence 48999999999999999999999999999998644 4689999999999999 88999999955 77766
No 76
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=1.8e-12 Score=111.62 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=65.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCccc
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWRL 309 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~~ 309 (323)
.|||+|||.++++.+|+.||++||.|.+|.|++ +||||+.++...|. |..|||..|+| ..|.|+-+|++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg---~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHG---VNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecc---eEEEEEeccccC
Confidence 499999999999999999999999999999997 89999999999999 88899999976 899999988883
No 77
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.32 E-value=4.4e-12 Score=106.11 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=71.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHH----HhhcCCCeEEEEEec-CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 229 TPCATLFVANLGPTCTEQELTQ----VFSKCPGFLKLKIQS-TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~----~F~~fG~i~~v~i~~-~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.++.||||.||...+.-++|+. ||++||.|.+|...+ .+-+|.|||.|.+.+.|. +.+|+|+.+.| +.|+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg---K~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG---KPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC---chhh
Confidence 3466999999999999999999 999999999998864 345799999999999999 99999999999 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|.||++++--
T Consensus 84 iqyA~s~sdi 93 (221)
T KOG4206|consen 84 IQYAKSDSDI 93 (221)
T ss_pred eecccCccch
Confidence 9999988544
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=1e-11 Score=86.99 Aligned_cols=67 Identities=39% Similarity=0.580 Sum_probs=58.7
Q ss_pred eEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEE
Q 020632 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (323)
Q Consensus 70 tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v 136 (323)
+|||+|||.++++++|+++|+.||.+..+.+....+..+|+|||+|.+.++|++|++.++ .|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 589999999999999999999999988887775555678999999999999999999987 5666554
No 79
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=8.4e-12 Score=107.93 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=68.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec----CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~----~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.|-+||||+-|+.+++|.+|+..|+.||.|+.|+|+. ++++|||||+|++..+-. -...+|.+| ||+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I---dgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI---DGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee---cCcEEEE
Confidence 4689999999999999999999999999999999965 457899999999988777 778889999 5699999
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
.+-+..
T Consensus 176 DvERgR 181 (335)
T KOG0113|consen 176 DVERGR 181 (335)
T ss_pred Eecccc
Confidence 997655
No 80
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=9.1e-12 Score=106.23 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=63.0
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (323)
..||||+||++.+||++|+++|+.||.|+.|.|..++ ...+||||+|.+.++|+.|+.+-+ .++.|.|..+.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4899999999999999999999999999999988764 456799999999999999995443 88888887654
No 81
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=9.4e-12 Score=117.00 Aligned_cols=178 Identities=20% Similarity=0.239 Sum_probs=123.4
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
...+.+||++||..+++.+++++...||.+....+..+ .+.++||||.+|.+......|++.|| .++.|.|+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 44589999999999999999999999999776555444 46799999999999999999999999 7799999888
Q ss_pred cCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCC
Q 020632 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (323)
.............. .. .+ .+.+..
T Consensus 367 ~~g~~~~~~~~~~~---------~~-~~------------------------~~i~~~---------------------- 390 (500)
T KOG0120|consen 367 IVGASNANVNFNIS---------QS-QV------------------------PGIPLL---------------------- 390 (500)
T ss_pred hccchhccccCCcc---------cc-cc------------------------ccchhh----------------------
Confidence 65433211111000 00 00 000000
Q ss_pred CCCCCCCCCCCcCeEEEcCCC--C-CCCH-------HHHHHHhhcCCCeEEEEEecC-------CCCCeEEEEecCchhh
Q 020632 220 SAPSGPKNVTPCATLFVANLG--P-TCTE-------QELTQVFSKCPGFLKLKIQST-------YGPPVAFVDFQVTCVC 282 (323)
Q Consensus 220 ~~~~~~~~~~~~~tLfV~nLp--~-~~te-------~~L~~~F~~fG~i~~v~i~~~-------~~~g~aFV~F~~~~~A 282 (323)
..+....+..+|.+.|+= . -.++ |+++.-|++||.|..|.+-+. .+.|.-||+|.+.+++
T Consensus 391 ---~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~ 467 (500)
T KOG0120|consen 391 ---MTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDS 467 (500)
T ss_pred ---hcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHH
Confidence 000001125566666651 1 1122 245566778999999998543 1346889999999999
Q ss_pred H--HHhhCCceeccCCCCceEEEEc
Q 020632 283 V--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 283 ~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
+ +++|+|.++.+ |.+..+|-
T Consensus 468 qrA~~~L~GrKF~n---RtVvtsYy 489 (500)
T KOG0120|consen 468 QRAMEELTGRKFAN---RTVVASYY 489 (500)
T ss_pred HHHHHHccCceeCC---cEEEEEec
Confidence 9 99999999976 89988885
No 82
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.5e-12 Score=107.92 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=70.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEe----cCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQ----STYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~----~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.+||||++|..++||.-|...|-.||+|++|.+- ..+.+|||||+|+..|+|. |..||+.+|.| |.|+|.|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G---rtirVN~ 86 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG---RTIRVNL 86 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc---eeEEEee
Confidence 7899999999999999999999999999999983 3456799999999999999 99999999988 9999999
Q ss_pred cCccc
Q 020632 305 DQWRL 309 (323)
Q Consensus 305 ak~~~ 309 (323)
|+...
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98763
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=6.4e-13 Score=107.01 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=66.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
+.-|||+|||+++||.||..+|++||.|.+|.|++++ ++||||..|++..+.. +..|||..|.| |.|+|..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g---RtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG---RTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc---eeEEeee
Confidence 4569999999999999999999999999999998654 6889999999999999 99999999988 9999985
Q ss_pred c
Q 020632 305 D 305 (323)
Q Consensus 305 a 305 (323)
-
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 3
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2e-12 Score=107.13 Aligned_cols=77 Identities=27% Similarity=0.486 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..||||||+|-.+|+|.-|...|-.||.|..+++..+ +++++|||||+|.-.++|.+||..|| .||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3499999999999999999999999999998887765 78899999999999999999999999 99999999997
Q ss_pred CCC
Q 020632 141 SNS 143 (323)
Q Consensus 141 ~~~ 143 (323)
...
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 643
No 85
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=9.4e-12 Score=83.82 Aligned_cols=54 Identities=24% Similarity=0.248 Sum_probs=48.9
Q ss_pred HHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 248 LTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 248 L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
|+++|++||.|+++++..++ +++|||+|.+.++|. +..|||..+.| +.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g---~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG---RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT---EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEC
Confidence 78999999999999998755 599999999999999 88999999966 99999996
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.5e-11 Score=106.45 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=72.9
Q ss_pred CCCCCCCCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCC
Q 020632 59 FPAYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGS 132 (323)
Q Consensus 59 ~~~~~~~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~ 132 (323)
..++...+.-+||||+-|+++++|.+|+..|+.||.|+.+.|..+ +++++|||||+|++..+...|.+... +|+
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 344566688899999999999999999999999999999988765 78899999999999999999998887 889
Q ss_pred eEEEEEcc
Q 020632 133 TLYIDLAK 140 (323)
Q Consensus 133 ~l~v~~a~ 140 (323)
.|.|.+-.
T Consensus 172 ri~VDvER 179 (335)
T KOG0113|consen 172 RILVDVER 179 (335)
T ss_pred EEEEEecc
Confidence 99888754
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=5.4e-12 Score=105.89 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=61.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
-..|||+||+|+++.|+|++.|++||+|.+..++.++ +||||||+|.|.++|. .-.--.-.| |||.-.|.+|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piI---dGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPII---DGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcc---cccccccchh
Confidence 4569999999999999999999999999999997644 6899999999999999 333344455 6688888876
Q ss_pred Cc
Q 020632 306 QW 307 (323)
Q Consensus 306 k~ 307 (323)
--
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 44
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=94.87 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=68.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
..-.|||.++...+||++|.+.|+.||.|+.+.|.-+. -||||.|+|++.++|+ +.+|||..|.+ ..|.|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~---q~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG---QNVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC---CceeEE
Confidence 36689999999999999999999999999999995433 3789999999999999 99999999988 899999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
|+-.+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 97444
No 89
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=8.1e-12 Score=121.89 Aligned_cols=171 Identities=16% Similarity=0.214 Sum_probs=133.1
Q ss_pred CCCCCCCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhCCCCeEEEEE
Q 020632 60 PAYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALNKGSTLYIDL 138 (323)
Q Consensus 60 ~~~~~~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~~g~~l~v~~ 138 (323)
.+..+...++|||+|||+..+++.+|+..|..+|.++.|.|... .+....|+||.|.+.+.+-.|...+. +..| +..
T Consensus 364 ~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s-~~~I-~~g 441 (975)
T KOG0112|consen 364 LKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEES-GPLI-GNG 441 (975)
T ss_pred ccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhc-CCcc-ccC
Confidence 34455566899999999999999999999999999999988865 34456699999999999888887772 2222 110
Q ss_pred ccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCC
Q 020632 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (323)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (323)
..+.... ++
T Consensus 442 -----~~r~glG-------------------------------------------~~----------------------- 450 (975)
T KOG0112|consen 442 -----THRIGLG-------------------------------------------QP----------------------- 450 (975)
T ss_pred -----ccccccc-------------------------------------------cc-----------------------
Confidence 0000000 00
Q ss_pred CCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCC
Q 020632 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKL 296 (323)
Q Consensus 219 ~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~ 296 (323)
...+.+.|||++|...+....|...|..||.|..|.+..+. .||+|.|++...|+ +..|-|..|++ .
T Consensus 451 --------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq--~yayi~yes~~~aq~a~~~~rgap~G~-P 519 (975)
T KOG0112|consen 451 --------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ--PYAYIQYESPPAAQAATHDMRGAPLGG-P 519 (975)
T ss_pred --------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC--cceeeecccCccchhhHHHHhcCcCCC-C
Confidence 00125669999999999999999999999999999888755 69999999999999 99999999998 4
Q ss_pred CCceEEEEcCcccccccc
Q 020632 297 SDGISSNWDQWRLRSWIQ 314 (323)
Q Consensus 297 g~~l~V~~ak~~~~~~~~ 314 (323)
-+.|+|.|++...+...+
T Consensus 520 ~~r~rvdla~~~~~~Pqq 537 (975)
T KOG0112|consen 520 PRRLRVDLASPPGATPQQ 537 (975)
T ss_pred CcccccccccCCCCChhh
Confidence 567999999887655444
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=4.6e-11 Score=84.08 Aligned_cols=69 Identities=28% Similarity=0.344 Sum_probs=61.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
+|+|+|||..+++++|+++|+.||.|..+.+.... .+++|||+|.+.++|. +..++|..+.+ +.++|+|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~---~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG---RPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEeC
Confidence 48999999999999999999999999999998654 2689999999999999 99999999865 8888864
No 91
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=3e-11 Score=112.94 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=69.3
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
++|||||+|++++|++|..+|+..|.|.++++..+ +++.+||||++|.+.++|+.|++.|| .|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999988887765 67789999999999999999999999 9999999998654
Q ss_pred C
Q 020632 143 S 143 (323)
Q Consensus 143 ~ 143 (323)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=3e-11 Score=84.23 Aligned_cols=65 Identities=25% Similarity=0.298 Sum_probs=57.7
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCC----CCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 236 VANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 236 V~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~----~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
|+||+..+++++|+++|++||.|..+++..... +++|||+|.+.++|. +..|+|..+.+ +.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~---~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG---RPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC---cEEEeC
Confidence 679999999999999999999999999976543 689999999999999 89999999965 777763
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.23 E-value=1.8e-11 Score=100.62 Aligned_cols=77 Identities=23% Similarity=0.422 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
+...+|-|-||-+-++.++|+.+|++||.|-.|.|..+ ++.++|||||-|.+..+|+.|+++|. +|+.|+|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 44589999999999999999999999999999998876 67789999999999999999999999 9999999998
Q ss_pred cCC
Q 020632 140 KSN 142 (323)
Q Consensus 140 ~~~ 142 (323)
+-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 643
No 94
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=1.5e-11 Score=99.34 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=67.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec----CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~----~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
..||||+||+..++++.|+++|-+.|.|.++++-+ ...+|||||+|.+.|+|+ ++-||+..|+| ++|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg---rpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG---RPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC---ceeEEEe
Confidence 67899999999999999999999999999999843 345799999999999999 99999999998 9999998
Q ss_pred cC
Q 020632 305 DQ 306 (323)
Q Consensus 305 ak 306 (323)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 75
No 95
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=3.2e-11 Score=109.52 Aligned_cols=77 Identities=30% Similarity=0.477 Sum_probs=68.1
Q ss_pred CCCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 64 ~~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.-..++.|||+||+.++||+.|+++|++||.|+.|+..+ -||||+|.+.++|.+||+.+| +|..|.|.+|
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc------ceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 335579999999999999999999999999999887552 289999999999999999999 9999999999
Q ss_pred cCCCccc
Q 020632 140 KSNSRSK 146 (323)
Q Consensus 140 ~~~~~~~ 146 (323)
+...+.+
T Consensus 329 KP~~k~k 335 (506)
T KOG0117|consen 329 KPVDKKK 335 (506)
T ss_pred CChhhhc
Confidence 8776533
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=1.8e-10 Score=80.95 Aligned_cols=69 Identities=38% Similarity=0.596 Sum_probs=59.8
Q ss_pred eEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 70 tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
+|+|+|||..+++++|+++|+.||.+..+.+... ....+|+|||+|.+.++|..|++.++ .|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999988877754 23468899999999999999999998 677777653
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=81.35 Aligned_cols=64 Identities=39% Similarity=0.553 Sum_probs=55.8
Q ss_pred EeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEE
Q 020632 73 VAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (323)
Q Consensus 73 V~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v 136 (323)
|+|||..+++++|+++|+.||.|..+.+... ++.++|||||+|.+.++|.+|++.++ .|+.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999888877654 45678999999999999999999997 6666665
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4e-10 Score=104.49 Aligned_cols=154 Identities=22% Similarity=0.348 Sum_probs=104.1
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEec--cC---CCCCCc---eEEEEEccHHHHHHHHHHhC-CCCeEEEEE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLR--SS---TQNSQP---FAFAVFSDQQSALGAMYALN-KGSTLYIDL 138 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~--~~---~~~~~g---~aFV~f~~~~~A~~A~~~l~-~g~~l~v~~ 138 (323)
.+.||||+||++++|++|...|..||.+.. .-. .. ....+| |+|+.|++..+...-|.+.. ....+.+..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 589999999999999999999999998421 111 11 122344 99999999999988877777 556666665
Q ss_pred ccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCC
Q 020632 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (323)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (323)
+....+.+. ..-..|.-.+.. +. . .
T Consensus 338 ss~~~k~k~-VQIrPW~laDs~------fv----~--------------------------------------------d 362 (520)
T KOG0129|consen 338 SSPTIKDKE-VQIRPWVLADSD------FV----L--------------------------------------------D 362 (520)
T ss_pred ecCcccccc-eeEEeeEeccch------hh----h--------------------------------------------c
Confidence 543322211 010111000000 00 0 0
Q ss_pred CCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhh-cCCCeEEEEEecCC----CCCeEEEEecCchhh
Q 020632 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFS-KCPGFLKLKIQSTY----GPPVAFVDFQVTCVC 282 (323)
Q Consensus 219 ~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~-~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A 282 (323)
.....++.+|||||+||--++.++|..+|+ .||+|..+-|-++. -+|-|=|.|.+..+=
T Consensus 363 -----~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsY 426 (520)
T KOG0129|consen 363 -----HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAY 426 (520)
T ss_pred -----cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHH
Confidence 001123589999999999999999999999 69999999997763 368899999886543
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.16 E-value=4.9e-11 Score=111.50 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..|||||||++++|++|.++|+..|.|..++++.+ +.+||||++|.+.++|. +..|||.++.| +.|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g---r~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG---RKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC---ceEEeecc
Confidence 77999999999999999999999999999999653 35789999999999999 99999999977 99999998
Q ss_pred Ccccc
Q 020632 306 QWRLR 310 (323)
Q Consensus 306 k~~~~ 310 (323)
.+...
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 76643
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=103.71 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=67.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
..+|||+||+.++|+++|+++|.+||.|..+++..+ ..+|||||+|.+.++|. +..|+|..|.+ +.|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~---~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG---RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC---ceeEeec
Confidence 588999999999999999999999999999988553 46899999999999999 99999999977 9999999
Q ss_pred cC
Q 020632 305 DQ 306 (323)
Q Consensus 305 ak 306 (323)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 75
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=3.5e-12 Score=102.79 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=67.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+..=|||||||+.+||.+|.-+|++||.+..|.|.++ +++++||||+.|+|..+.-.|+..|| .||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34578999999999999999999999999877776654 78899999999999999999999999 9999999875
Q ss_pred c
Q 020632 140 K 140 (323)
Q Consensus 140 ~ 140 (323)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=2.1e-10 Score=108.05 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=123.4
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcC-----------CC-ceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---C
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREF-----------PG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---K 130 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~-----------G~-v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~ 130 (323)
..++.+||++++..++++++-.+|..- |+ +..+.+. ....|||++|.+.++|..|+..+. .
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n----~~~nfa~ie~~s~~~at~~~~~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN----LEKNFAFIEFRSISEATEAMALDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec----ccccceeEEecCCCchhhhhcccchhhC
Confidence 345999999999999999999999864 44 6666665 345589999999999999987775 7
Q ss_pred CCeEEEEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCc
Q 020632 131 GSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSL 210 (323)
Q Consensus 131 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (323)
|..+++..-....-. ...... . +. .+
T Consensus 249 g~~~~~~r~~d~~~~--p~~~~~-------~-------------------------------~~-----~~--------- 274 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPV--PGITLS-------P-------------------------------SQ-----LG--------- 274 (500)
T ss_pred CCCceecccccccCC--ccchhh-------h-------------------------------cc-----cc---------
Confidence 777665321100000 000000 0 00 00
Q ss_pred cccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--H
Q 020632 211 ITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--C 284 (323)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~ 284 (323)
+. .............+.|||+||+..+++++++++.+.||.++..+++.+ .++||||.+|-+..... +
T Consensus 275 -~~-----~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~ 348 (500)
T KOG0120|consen 275 -KV-----GLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAI 348 (500)
T ss_pred -cc-----CCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhh
Confidence 00 000000011112566999999999999999999999999998888643 46899999999999998 9
Q ss_pred HhhCCceeccCCCCceEEEEcCcc
Q 020632 285 HILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 285 ~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
..|||..+++ +.|.|+.|-..
T Consensus 349 agLnGm~lgd---~~lvvq~A~~g 369 (500)
T KOG0120|consen 349 AGLNGMQLGD---KKLVVQRAIVG 369 (500)
T ss_pred cccchhhhcC---ceeEeehhhcc
Confidence 9999999988 89999987433
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.5e-10 Score=88.95 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.--|||.++-..++|++|.+.|..||+|..+.|..+ ++..+|||+|+|++.++|++|++.+| .|+.|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 4578999999999999999999999999999887765 56679999999999999999999999 99999999996
Q ss_pred CCC
Q 020632 141 SNS 143 (323)
Q Consensus 141 ~~~ 143 (323)
.+.
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 543
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=2.7e-10 Score=76.62 Aligned_cols=52 Identities=29% Similarity=0.484 Sum_probs=46.0
Q ss_pred HHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 85 IYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 85 L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
|+++|++||.|+.+.+..+. +++|||+|.+.++|++|++.|| .|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999988887543 5789999999999999999999 9999999986
No 105
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.5e-10 Score=105.69 Aligned_cols=169 Identities=21% Similarity=0.215 Sum_probs=110.0
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.++|+|-|||..|++++|+.+|+.||+|..|+.. ...+|.+||+|.|..+|++|+++|+ .|+.|+....
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t---~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~---- 147 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET---PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG---- 147 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc---cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc----
Confidence 4999999999999999999999999999875433 2456779999999999999999998 6666651100
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
..+..... ++ ..-++..+.+.+ .
T Consensus 148 -~~~~~~~~---------------------~~----------~~~~~~~~~p~a-------------------------~ 170 (549)
T KOG4660|consen 148 -ARRAMGLQ---------------------SG----------TSFLNHFGSPLA-------------------------N 170 (549)
T ss_pred -ccccchhc---------------------cc----------chhhhhccchhh-------------------------c
Confidence 00000000 00 000000000000 0
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.+..+-+...+|+- |.+..+..-++-+|+.+|.+.. +...... ..-|++|.+..++. ...+ |+.+.+ ....
T Consensus 171 s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-hq~~~~~~~~~s~a~~~~~~-G~~~s~---~~~v 243 (549)
T KOG4660|consen 171 SPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLN-HQRFVEFADNRSYAFSEPRG-GFLISN---SSGV 243 (549)
T ss_pred CCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchh-hhhhhhhccccchhhcccCC-ceecCC---CCce
Confidence 00111112234544 9999999888889999998887 5543222 37789999988888 3333 888866 6788
Q ss_pred EEEcCc
Q 020632 302 SNWDQW 307 (323)
Q Consensus 302 V~~ak~ 307 (323)
++|+..
T Consensus 244 ~t~S~~ 249 (549)
T KOG4660|consen 244 ITFSGP 249 (549)
T ss_pred EEecCC
Confidence 888866
No 106
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.07 E-value=2.7e-10 Score=109.76 Aligned_cols=71 Identities=32% Similarity=0.447 Sum_probs=66.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.+|||||+|+.+++|.+|..+|+.||.|++|.+. .++|||||.+....+|++|+..|+ .++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 6899999999999999999999999999999988 567899999999999999999998 8999999999654
No 107
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.07 E-value=1e-09 Score=91.51 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=73.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
..+||||.+||.++.-.||..+|..|-+++...|.... ++.+|||.|.+..+|. +++|||..+--..+..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 47899999999999999999999999998877663222 2469999999999999 9999999997777889999
Q ss_pred EEcCcccccccc
Q 020632 303 NWDQWRLRSWIQ 314 (323)
Q Consensus 303 ~~ak~~~~~~~~ 314 (323)
++||+..+.++.
T Consensus 113 ElAKSNtK~kr~ 124 (284)
T KOG1457|consen 113 ELAKSNTKRKRR 124 (284)
T ss_pred eehhcCcccccC
Confidence 999998666554
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.3e-10 Score=101.20 Aligned_cols=80 Identities=21% Similarity=0.379 Sum_probs=72.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCC----eEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPP----VAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g----~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.+|.++|||.-|.+-+|+++|.-+|++||.|..|.++++.+.| ||||+|++.+++. .-.|++..|-. +.|+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD---rRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD---RRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc---ceEE
Confidence 3578999999999999999999999999999999999877655 9999999999999 78899999944 9999
Q ss_pred EEEcCcccc
Q 020632 302 SNWDQWRLR 310 (323)
Q Consensus 302 V~~ak~~~~ 310 (323)
|.|+.+..+
T Consensus 313 VDFSQSVsk 321 (479)
T KOG0415|consen 313 VDFSQSVSK 321 (479)
T ss_pred eehhhhhhh
Confidence 999877654
No 109
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=7.1e-10 Score=98.01 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=68.5
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH---HHhhCCceeccCCCCce
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV---CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~---~~~lnG~~l~g~~g~~l 300 (323)
.+..+..-+||||+||-..++|.+|++.|.+||+|+.++++.+. +||||+|.+.++|+ ...+|-..| +|..|
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI---~G~Rl 295 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVI---NGFRL 295 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeee---cceEE
Confidence 34455567899999999999999999999999999999999855 79999999999999 566776666 45999
Q ss_pred EEEEcCc
Q 020632 301 SSNWDQW 307 (323)
Q Consensus 301 ~V~~ak~ 307 (323)
+|.|++.
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999987
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=9.5e-11 Score=97.28 Aligned_cols=117 Identities=25% Similarity=0.274 Sum_probs=93.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.+||||+|+-..|+|+-|.++|-+-|+|..|.|........-||||.|.+..+...|++++| .++.|.+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~------ 82 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRT------ 82 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcc------
Confidence 49999999999999999999999999999998886543333499999999999999999997 44444332
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
T Consensus 83 -------------------------------------------------------------------------------- 82 (267)
T KOG4454|consen 83 -------------------------------------------------------------------------------- 82 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcCeEEEcC----CCCCCCHHHHHHHhhcCCCeEEEEEec---CCCCCeEEEEecCch
Q 020632 224 GPKNVTPCATLFVAN----LGPTCTEQELTQVFSKCPGFLKLKIQS---TYGPPVAFVDFQVTC 280 (323)
Q Consensus 224 ~~~~~~~~~tLfV~n----Lp~~~te~~L~~~F~~fG~i~~v~i~~---~~~~g~aFV~F~~~~ 280 (323)
++.|| |...++++.+.++|+.-|.+..+++-+ +..+.++||.+.-..
T Consensus 83 ----------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 83 ----------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred ----------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 34444 778899999999999999999998843 224678888875443
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=6.8e-10 Score=107.08 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=69.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
-++||||+.|+.+++|+||+++|+.||.|..|.++... +||||.+....+|. +.+|+...+.+ +.|+|.||..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~---k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVAD---KTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccc---eeeEEeeecc
Confidence 36799999999999999999999999999999998744 89999999999999 99999999987 8999999987
Q ss_pred c
Q 020632 308 R 308 (323)
Q Consensus 308 ~ 308 (323)
+
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 7
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.5e-09 Score=92.69 Aligned_cols=77 Identities=27% Similarity=0.392 Sum_probs=65.4
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEe--ccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHL--RSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~--~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
..+.|+|||-.||.+..+.||.++|-.||.|.+.++ .+.+..+++|+||.|++..+|+.||.++| +=+.|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 355799999999999999999999999999876554 33467799999999999999999999998 557777776
Q ss_pred ccC
Q 020632 139 AKS 141 (323)
Q Consensus 139 a~~ 141 (323)
.+.
T Consensus 362 KRP 364 (371)
T KOG0146|consen 362 KRP 364 (371)
T ss_pred cCc
Confidence 543
No 113
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.92 E-value=2.5e-09 Score=90.88 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=65.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
..+||.+.|..+++++-|-..|.+|..+...++++++ ++||+||.|.+..++. +.+|||+.++. +.|++.-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs---rpiklRk 266 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS---RPIKLRK 266 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc---chhHhhh
Confidence 4469999999999999999999999998888886544 5889999999999999 99999999987 8888875
Q ss_pred cCcc
Q 020632 305 DQWR 308 (323)
Q Consensus 305 ak~~ 308 (323)
+-++
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 5444
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=3.1e-09 Score=93.99 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=65.1
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC-----CCCeEEEEEc
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLA 139 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~-----~g~~l~v~~a 139 (323)
+...+||||++|-..++|.+|++.|.+||+|+++.+. ..+++|||+|.+.++|+.|.+.+- +|+.|.|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~----~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL----PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee----cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3446999999999999999999999999999998877 345589999999999999887776 9999999999
Q ss_pred cC
Q 020632 140 KS 141 (323)
Q Consensus 140 ~~ 141 (323)
..
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.91 E-value=3e-09 Score=74.98 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHHHHhh----cCCCeEEEE-E-ec-----CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 245 EQELTQVFS----KCPGFLKLK-I-QS-----TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 245 e~~L~~~F~----~fG~i~~v~-i-~~-----~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
+++|+++|+ +||.|.+|. + +. +.++|||||+|.+.++|. +..|||+.+.| +.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g---r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG---RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEe
Confidence 678999998 999999985 4 22 345799999999999999 99999999955 78776
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=5.8e-09 Score=73.52 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=45.6
Q ss_pred hHHHHHHhh----cCCCceEEE-e--ccCC--CCCCceEEEEEccHHHHHHHHHHhC----CCCeEEE
Q 020632 82 PREIYNLFR----EFPGYESSH-L--RSST--QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (323)
Q Consensus 82 e~~L~~~F~----~~G~v~~~~-~--~~~~--~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v 136 (323)
+++|+++|+ .||.|..+. + ...+ +.++|||||+|.+.++|.+|+..|| .|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999988773 3 2233 6789999999999999999999998 7777765
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.88 E-value=4.8e-09 Score=86.71 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=64.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEe----cCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKC-PGFLKLKIQ----STYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~f-G~i~~v~i~----~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
....+||..++..+.+.+|...|.+| |.+.++++. ++.++|||||+|++.+.|. .+.||+..|++ +-|.|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e---~lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME---HLLEC 124 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh---heeee
Confidence 35569999999999999999999999 667778883 3456899999999999999 89999999988 89999
Q ss_pred EEc
Q 020632 303 NWD 305 (323)
Q Consensus 303 ~~a 305 (323)
.|=
T Consensus 125 ~vm 127 (214)
T KOG4208|consen 125 HVM 127 (214)
T ss_pred EEe
Confidence 984
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=6.5e-10 Score=108.42 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=113.7
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEec--cCCCCCCceEEEEEccHHHHHHHHHHhCCCCeEEEEEccCCCc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLR--SSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLYIDLAKSNSR 144 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~--~~~~~~~g~aFV~f~~~~~A~~A~~~l~~g~~l~v~~a~~~~~ 144 (323)
+..++||+||+..+.+.+|...|..+|.++.+++. .+.+.-+|+|||+|...+++.+||.... + .. +.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~-~~----~g---- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-S-CF----FG---- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-h-hh----hh----
Confidence 35788999999999999999999999997766654 3456678999999999999999997762 1 00 00
Q ss_pred ccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCCC
Q 020632 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (323)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCceeccCCCCc
Q 020632 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDG 299 (323)
Q Consensus 225 ~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~ 299 (323)
...|||+|+|+..|.++|+.+|+.+|.++++++++. +-+|.|||.|.+..+|. ...+.+..+.. +.
T Consensus 736 ------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE---~~ 806 (881)
T KOG0128|consen 736 ------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE---NN 806 (881)
T ss_pred ------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh---cC
Confidence 223899999999999999999999999999988653 34789999999999999 67777777765 56
Q ss_pred eEEEEcC
Q 020632 300 ISSNWDQ 306 (323)
Q Consensus 300 l~V~~ak 306 (323)
+.|..+.
T Consensus 807 ~~v~vsn 813 (881)
T KOG0128|consen 807 GEVQVSN 813 (881)
T ss_pred ccccccC
Confidence 6666643
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=1.2e-08 Score=95.38 Aligned_cols=75 Identities=20% Similarity=0.410 Sum_probs=66.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.|+|||++|...+...+|+.||++||.|...++..+ +-.-++|+||++.+.++|.+||+.|+ .|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 699999999999999999999999999877766655 33457899999999999999999999 999999998865
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 4
No 120
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.77 E-value=1e-08 Score=96.00 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=72.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCC----CCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~----~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.+.|||.+|...+...+|+.||++||.|+-.+++++.+ ++|+||++.+.++|. |..|+-..|+| +-|.|+-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG---rmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG---RMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc---eeeeeee
Confidence 56799999999999999999999999999999987553 569999999999999 99999999988 9999999
Q ss_pred cCcccccccc
Q 020632 305 DQWRLRSWIQ 314 (323)
Q Consensus 305 ak~~~~~~~~ 314 (323)
+|+...-++.
T Consensus 482 aKNEp~Gkk~ 491 (940)
T KOG4661|consen 482 AKNEPGGKKN 491 (940)
T ss_pred cccCcccccc
Confidence 9988665544
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.3e-08 Score=90.16 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=68.0
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.+.|||-.|..-+++++|.-+|+.||.|.+|.+.++ ++.+..||||+|++.+++++|.-.|. +++.|.|.|+.+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 389999999999999999999999999999877665 56677899999999999999988887 999999999865
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
-++
T Consensus 319 Vsk 321 (479)
T KOG0415|consen 319 VSK 321 (479)
T ss_pred hhh
Confidence 444
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.75 E-value=2.6e-08 Score=82.39 Aligned_cols=75 Identities=27% Similarity=0.358 Sum_probs=65.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCC-ceEEEecc--CCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRS--STQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~-v~~~~~~~--~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..-+||..+|..+.+.+|..+|.+||. +..+++-+ +++.++|||||+|++.+.|+-|-+.|| .++.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 367899999999999999999999955 67777733 378899999999999999999999999 89999998865
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
..
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 44
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.70 E-value=2.1e-08 Score=89.80 Aligned_cols=165 Identities=19% Similarity=0.180 Sum_probs=117.3
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEE-ec-cCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSH-LR-SSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~-~~-~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
...++|++++.+.+.+.++..++..+|.+.... .. .....++|++.|.|...+.+..|+.... .++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 458999999999999999999999999743332 22 3456688999999999999999998774 22222222111
Q ss_pred CCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCC
Q 020632 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (323)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
... .+... +..+
T Consensus 167 ~~~--~~~~n--------~~~~---------------------------------------------------------- 178 (285)
T KOG4210|consen 167 RRG--LRPKN--------KLSR---------------------------------------------------------- 178 (285)
T ss_pred ccc--ccccc--------hhcc----------------------------------------------------------
Confidence 100 00000 0000
Q ss_pred CCCCCCCCCCcCeEE-EcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceec
Q 020632 221 APSGPKNVTPCATLF-VANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFK 293 (323)
Q Consensus 221 ~~~~~~~~~~~~tLf-V~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~ 293 (323)
.......++| |+||+.++++++|+..|..+|.|..+++.... .+|||||.|.+...+. +.. +...+.
T Consensus 179 -----~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~ 252 (285)
T KOG4210|consen 179 -----LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG 252 (285)
T ss_pred -----cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc
Confidence 0000133445 99999999999999999999999999996543 4689999999999999 555 788886
Q ss_pred cCCCCceEEEEcCcc
Q 020632 294 EKLSDGISSNWDQWR 308 (323)
Q Consensus 294 g~~g~~l~V~~ak~~ 308 (323)
+ +.++|.+.+..
T Consensus 253 ~---~~~~~~~~~~~ 264 (285)
T KOG4210|consen 253 G---RPLRLEEDEPR 264 (285)
T ss_pred C---cccccccCCCC
Confidence 5 89999998655
No 124
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.69 E-value=5.3e-08 Score=93.41 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=69.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec-------CCCCCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS-------TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~-------~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
++..+.|||+||++.++|+.|...|.+||.|..|+|+= ...+.||||-|.+..+|+ +..|||..+++ .
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~---~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME---Y 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee---e
Confidence 44567799999999999999999999999999999952 123579999999999999 99999999988 9
Q ss_pred ceEEEEcCcc
Q 020632 299 GISSNWDQWR 308 (323)
Q Consensus 299 ~l~V~~ak~~ 308 (323)
.|++-|+|..
T Consensus 248 e~K~gWgk~V 257 (877)
T KOG0151|consen 248 EMKLGWGKAV 257 (877)
T ss_pred eeeecccccc
Confidence 9999999765
No 125
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.68 E-value=9.7e-08 Score=89.08 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=63.6
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEc
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (323)
.....+|||+|||.++++++|+++|..||.|+...|..+ +.++.+||||+|.+.++++.||.+-. +++.|.|+-.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 345677999999999999999999999999876554433 24444899999999999999998876 8999999865
Q ss_pred cC
Q 020632 140 KS 141 (323)
Q Consensus 140 ~~ 141 (323)
+.
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 44
No 126
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=1.9e-08 Score=85.18 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=63.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
.+||++|++.+.+.+|..+|..||.|.+|.+.. ||+||+|++..+|. +..|||+.|.+. .+.|+|++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecce---eeeeeccccc
Confidence 389999999999999999999999999998877 89999999999999 999999999884 4999999854
No 127
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.55 E-value=6.3e-06 Score=76.56 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=55.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceE-E-EeccCCCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYES-S-HLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~-~-~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (323)
...|=+++||+.+|++||.++|+-.-.+.. + .+.....+..|=|||+|++.++|++||.... ..+-|.|-.+
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 377889999999999999999997654443 2 2233355577889999999999999998877 6666666544
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=3.9e-07 Score=78.93 Aligned_cols=79 Identities=25% Similarity=0.295 Sum_probs=70.0
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..+|+|.||++.|++++|++||..||.+..+.|..+ .+.+.|.|-|.|...++|++|++.++ +|+.|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 378999999999999999999999999888877765 56788999999999999999999999 9999999987665
Q ss_pred Cccc
Q 020632 143 SRSK 146 (323)
Q Consensus 143 ~~~~ 146 (323)
....
T Consensus 163 ~~~~ 166 (243)
T KOG0533|consen 163 SQSK 166 (243)
T ss_pred cccc
Confidence 5543
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.55 E-value=5.6e-06 Score=79.67 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=105.7
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEccCCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKSNS 143 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~~~ 143 (323)
+-+-+.+.+++.++.+++++|..- .+..+.|..+ .....|.++|.|....++++|+..-+ -.|.+.+.-+-.
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~-- 388 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN-- 388 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc--
Confidence 444567889999999999998531 1444444432 33335679999999999999987655 445554433211
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
..|........... . ..+....+.+- ..++++. .....
T Consensus 389 --------~~~~~a~~~~~~~~-------~------------~~~~~~hg~p~------~~pr~~~-------~~gq~-- 426 (944)
T KOG4307|consen 389 --------LGRNGAPPFQAGVP-------P------------PVIQNNHGRPI------APPRAMV-------RPGQN-- 426 (944)
T ss_pred --------cccccCccccccCC-------C------------CcccccCCCCC------CCccccc-------CCCCC--
Confidence 11110000000000 0 00000000000 0000000 00011
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEe---cCCCCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLK-LKIQ---STYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~-v~i~---~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
++.......+|||..||..+++.++.+.|..--.|++ |.|. ++..++.|||.|...+++. ...-+-+.++.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~--- 503 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH--- 503 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCc---
Confidence 2222334778999999999999999999999777776 5552 3445789999999988777 33333334433
Q ss_pred CceEEEE
Q 020632 298 DGISSNW 304 (323)
Q Consensus 298 ~~l~V~~ 304 (323)
+.|+|.=
T Consensus 504 r~irv~s 510 (944)
T KOG4307|consen 504 RIIRVDS 510 (944)
T ss_pred eEEEeec
Confidence 7888863
No 130
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.52 E-value=2.1e-07 Score=86.81 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=60.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..+|||+|||.++++++|+++|..||.|+..+|.... ..+||||+|++.+++. ...-+=..|++ +.|.|+-.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~---~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGG---RKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCC---eeEEEEec
Confidence 4569999999999999999999999999998885422 2379999999999999 44445555544 89999876
Q ss_pred Ccc
Q 020632 306 QWR 308 (323)
Q Consensus 306 k~~ 308 (323)
+..
T Consensus 365 ~~~ 367 (419)
T KOG0116|consen 365 RPG 367 (419)
T ss_pred ccc
Confidence 554
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=5.7e-08 Score=91.16 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=61.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
+..+|+|-|||.+|++++|+++|+.||+|+.|+... .+.+..||+|.|..+|. +++||+..|.+ +.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~---~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAG---KRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhh---hhhc
Confidence 578899999999999999999999999999988766 44599999999999999 99999999977 6776
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.45 E-value=1.3e-06 Score=65.06 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=59.4
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcC--CCceEEEecc--CCCCCCceEEEEEccHHHHHHHHHHhC--------CCCeEEE
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREF--PGYESSHLRS--STQNSQPFAFAVFSDQQSALGAMYALN--------KGSTLYI 136 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~--G~v~~~~~~~--~~~~~~g~aFV~f~~~~~A~~A~~~l~--------~g~~l~v 136 (323)
+||.|+|||...|.++|.+++... |.++-+.|.. .++.+.|||||.|.+.+.|.+-.+.++ ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988763 3455555544 467789999999999999999888887 4566777
Q ss_pred EEccCC
Q 020632 137 DLAKSN 142 (323)
Q Consensus 137 ~~a~~~ 142 (323)
.||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777543
No 133
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.44 E-value=4.8e-07 Score=81.27 Aligned_cols=168 Identities=16% Similarity=0.193 Sum_probs=99.1
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcC---C-CceEEE-eccCCCCCCceEEEEEccHHHHHHHHHHhC--CCCeEEEEEccC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREF---P-GYESSH-LRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKS 141 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~---G-~v~~~~-~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~ 141 (323)
--|=+++||+++++.++.++|..- + ..+.|. +.+..++-.|=|||.|...++|+.||..-. .|+. .|++.++
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqR-YIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQR-YIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHH-HHHHHHH
Confidence 456688999999999999999632 2 244444 444356667789999999999999997765 3332 2222222
Q ss_pred CCc-----ccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccC
Q 020632 142 NSR-----SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKF 216 (323)
Q Consensus 142 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
... ..+.... ... .+. ++...
T Consensus 241 TaaEvqqvlnr~~s~--------------pLi-----~~~-----------------------------------~sp~~ 266 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSE--------------PLI-----PGL-----------------------------------TSPLL 266 (508)
T ss_pred hHHHHHHHHHhhccc--------------ccc-----CCC-----------------------------------CCCCC
Confidence 111 0011000 000 000 00000
Q ss_pred CCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCC-eEE--EEEecC---CCCCeEEEEecCchhhH--HHhhC
Q 020632 217 NNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPG-FLK--LKIQST---YGPPVAFVDFQVTCVCV--CHILF 288 (323)
Q Consensus 217 ~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~-i~~--v~i~~~---~~~g~aFV~F~~~~~A~--~~~ln 288 (323)
...+....+.. ....+|-+++||++.+.|+|.++|..|.. |.- |.++-+ .-.|-|||+|.+.|+|. +..-+
T Consensus 267 p~~p~~~~p~~-~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~h 345 (508)
T KOG1365|consen 267 PGGPARLVPPT-RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCH 345 (508)
T ss_pred CCCccccCCCC-CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHH
Confidence 00011111111 12667999999999999999999999863 222 555322 22578999999999998 44444
Q ss_pred Ccee
Q 020632 289 SLLF 292 (323)
Q Consensus 289 G~~l 292 (323)
.+..
T Consensus 346 k~~m 349 (508)
T KOG1365|consen 346 KKLM 349 (508)
T ss_pred Hhhc
Confidence 4444
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.42 E-value=1.2e-06 Score=65.26 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEE----ecCCCCCeEEEEecCchhhH--HHhhCCceeccC-CCCceEE
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKC--PGFLKLKI----QSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEK-LSDGISS 302 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~f--G~i~~v~i----~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~-~g~~l~V 302 (323)
.||.|+|||...|.++|.+++... |.+.-+.+ .++-+.|||||.|.+++.|. ...++|+.+... ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 579999999999999999998873 44444433 23345799999999999999 999999999642 3477788
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888654
No 135
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.40 E-value=3.1e-07 Score=82.64 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=65.0
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~~ 142 (323)
.+.|||++|+.++++++|++.|++||.|..+.+..+ +.+.+||+||+|.+.+++++++..-- .++.+.|..|..+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence 469999999999999999999999998766655543 67789999999999999998875544 9999999988665
Q ss_pred Cc
Q 020632 143 SR 144 (323)
Q Consensus 143 ~~ 144 (323)
..
T Consensus 177 ~~ 178 (311)
T KOG4205|consen 177 EV 178 (311)
T ss_pred hh
Confidence 43
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.39 E-value=1e-06 Score=76.29 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=65.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec---CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS---TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~---~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..+|+|.||+..|+++||+++|..||.++.+-+.- +.+.|+|=|.|...++|. +..+||..| ||+.|+|...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l---dG~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL---DGRPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc---CCceeeeEEe
Confidence 46799999999999999999999999988888754 335689999999999999 999999888 6699999876
Q ss_pred Ccc
Q 020632 306 QWR 308 (323)
Q Consensus 306 k~~ 308 (323)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 544
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.39 E-value=2.9e-08 Score=89.97 Aligned_cols=145 Identities=16% Similarity=0.200 Sum_probs=112.5
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC-----CCCeEEEEEccCCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAKSNS 143 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~~~~ 143 (323)
..|||+||...++..+|..+|...-.-.+-.+. ...||+||.+.+...|.+|++.++ .|+.+.+..+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl----~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL----VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee----eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 468999999999999999999764211111111 135689999999999999999998 88888887664432
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
..
T Consensus 78 qr------------------------------------------------------------------------------ 79 (584)
T KOG2193|consen 78 QR------------------------------------------------------------------------------ 79 (584)
T ss_pred HH------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCC-CCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG-PPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~-~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
++.+-|+|+++...|+.|..|..+||.++.|..+.... .-.-=|+|.+.+.+. +..|||..|.. ..+
T Consensus 80 -------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en---~~~ 149 (584)
T KOG2193|consen 80 -------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN---QHL 149 (584)
T ss_pred -------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh---hhh
Confidence 33478999999999999999999999999988754332 123346888888888 99999999977 789
Q ss_pred EEEEc
Q 020632 301 SSNWD 305 (323)
Q Consensus 301 ~V~~a 305 (323)
+|.|-
T Consensus 150 k~~Yi 154 (584)
T KOG2193|consen 150 KVGYI 154 (584)
T ss_pred hcccC
Confidence 99884
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=2.2e-07 Score=77.57 Aligned_cols=72 Identities=21% Similarity=0.164 Sum_probs=64.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
.+||||+||-..+||+-|.++|-+-|.|.+|.|..++ ...||||.|.++.+.. ++-|||..|.+ +.++|.+-
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~---~e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEE---DEEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhcc---chhhcccc
Confidence 6889999999999999999999999999999995433 3349999999999999 99999999987 89998873
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.29 E-value=6.9e-07 Score=80.47 Aligned_cols=196 Identities=14% Similarity=0.030 Sum_probs=115.8
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCC-----CCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEcc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQN-----SQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~-----~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (323)
..|-|.||...++.++++.||.-.|.|..+.|..+-.. ..-.|||.|.|...+..|..+-| -++.|.|-.+-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 58999999999999999999999999988877653211 23379999999999999988777 66666665442
Q ss_pred CCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCcCCCCCCccccccCCCC
Q 020632 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFN-TIGYPHTQSHENFDARGGSLITTAKFNNS 219 (323)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (323)
.....-+. ..... .......+... ..| .++.. ... .++....+ ...++.+.+..
T Consensus 88 ~~~~p~r~-af~~l---~~~navprll~----pdg----~Lp~~---~~lt~~nh~p~a---ilktP~Lp~~~------- 142 (479)
T KOG4676|consen 88 DEVIPDRF-AFVEL---ADQNAVPRLLP----PDG----VLPGD---RPLTKINHSPNA---ILKTPELPPQA------- 142 (479)
T ss_pred CCCCccHH-HHHhc---CcccccccccC----CCC----ccCCC---CccccccCCccc---eecCCCCChHh-------
Confidence 21110000 00000 00000000000 000 00000 000 00000000 00000000000
Q ss_pred CCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCcee
Q 020632 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLF 292 (323)
Q Consensus 220 ~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l 292 (323)
.+. .-..-.+||+|++|...+...++-++|..+|+|...+...+....++-|+|....+.. +..++|+.+
T Consensus 143 ~A~---kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 143 AAK---KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred hhh---hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhcchhh
Confidence 000 0011257899999999999999999999999999988877666678889998777666 888888887
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.26 E-value=1.7e-06 Score=83.40 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=65.9
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-----CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-----TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-----~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~ 135 (323)
....++|||+||+..++|+.|...|..||+|.+++|... ....+-||||.|-+..+|++|++.|+ .+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 344689999999999999999999999999988877643 34456689999999999999999998 788888
Q ss_pred EEEccC
Q 020632 136 IDLAKS 141 (323)
Q Consensus 136 v~~a~~ 141 (323)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888753
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.17 E-value=3.3e-06 Score=73.25 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
+.+.+.+||+|+.+.++.+++...|+.||.+..+.|..+ .+..+||+||+|.+.+.++.|+. |+ .|+.+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 455699999999999999999999999999876655543 44579999999999999999999 66 888888887
Q ss_pred ccCC
Q 020632 139 AKSN 142 (323)
Q Consensus 139 a~~~ 142 (323)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7654
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.16 E-value=1e-05 Score=57.58 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 232 ATLFVANLGPTCTEQE----LTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~----L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..|+|.|||.+.+-.. |++|+..+|+ +.+.|. .+.|+|.|.+.+.|. ...|+|..+.| +.|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-kVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG---~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-KVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFG---NKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT--SSS---S--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC-EEEEEe----CCEEEEEeCCHHHHHHHHHhhccccccc---ceEEEEEc
Confidence 3599999999888765 6667778987 333333 279999999999999 99999999998 89999998
Q ss_pred Cc
Q 020632 306 QW 307 (323)
Q Consensus 306 k~ 307 (323)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 143
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.05 E-value=1.2e-05 Score=71.57 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=63.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~--------v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
+..|||.|||.++|.+++.++|++||.|.. |+|-+.. -||=|.+.|.-.++.. +..|++..|.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg--- 210 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG--- 210 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC---
Confidence 555999999999999999999999998763 6664433 2678999999999998 99999999987
Q ss_pred CceEEEEcCcc
Q 020632 298 DGISSNWDQWR 308 (323)
Q Consensus 298 ~~l~V~~ak~~ 308 (323)
+.|+|+-|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999988644
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.05 E-value=5.5e-06 Score=71.93 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=64.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
...+||+|+.+.+|-+++...|+.||.|..+.+..++ .+|||||+|.+.+.+. -..|||..|.+ +.+.|++.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~---~~i~vt~~ 177 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPG---PAIEVTLK 177 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccc---ccceeeee
Confidence 5679999999999999999999999999877775433 4789999999999999 44499999976 99999997
Q ss_pred Ccc
Q 020632 306 QWR 308 (323)
Q Consensus 306 k~~ 308 (323)
+.+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 665
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.03 E-value=3.8e-05 Score=54.72 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=46.2
Q ss_pred ceEEEeCCCCCCchH----HHHHHhhcCCC-ceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 69 RTLFVAGLPEDVKPR----EIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~----~L~~~F~~~G~-v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
..|||.|||.+.+-. -|++|+..+|. |..|. .+.|+|.|.+.+.|++|.+.|+ .|+.|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 579999999998877 46778889997 44331 2349999999999999999998 9999999987
Q ss_pred cC
Q 020632 140 KS 141 (323)
Q Consensus 140 ~~ 141 (323)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.02 E-value=6.3e-06 Score=70.45 Aligned_cols=70 Identities=20% Similarity=0.405 Sum_probs=59.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEecc--CCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS--STQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~--~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (323)
.-+||.|.|..+++++.|-..|.+|-.+....+.+ ++++++||+||.|.+..++.+|+..++ +.++|++.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 46899999999999999999999999865544333 367899999999999999999999998 66766654
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=3.6e-05 Score=58.50 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=33.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV 283 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~ 283 (323)
..|+|.+++..++.++|+++|+.||.|..|.+..+. ..|||.|.+.++|.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~ 51 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQ 51 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHH
Confidence 468999999999999999999999999999998866 69999999999998
No 148
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.72 E-value=7.5e-05 Score=73.13 Aligned_cols=7 Identities=57% Similarity=1.160 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 020632 6 PPPAGLH 12 (323)
Q Consensus 6 ~~~~~~~ 12 (323)
|+|-++.
T Consensus 528 P~PP~~p 534 (1102)
T KOG1924|consen 528 PPPPPLP 534 (1102)
T ss_pred CCCCCCC
Confidence 4444444
No 149
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.60 E-value=0.0013 Score=59.69 Aligned_cols=151 Identities=16% Similarity=0.074 Sum_probs=93.9
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCC---ceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~---v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~ 138 (323)
.+++..+=.++|||.-++.+|..+|.---- ...+.+.. .++..|.+.|.|.|.+.-+.|++.-. .++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~-qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNA-QGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehh-hhccccceEEEecCchhhhhhhHhhhhhccCCceeeec
Confidence 344456677899999999999999975322 11122222 23455789999999999999988766 677777654
Q ss_pred ccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCC
Q 020632 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (323)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (323)
+......+-... ++. ..
T Consensus 136 a~ge~f~~iagg--------------------------~s~------------------e~------------------- 152 (508)
T KOG1365|consen 136 ATGEEFLKIAGG--------------------------TSN------------------EA------------------- 152 (508)
T ss_pred cCchhheEecCC--------------------------ccc------------------cC-------------------
Confidence 422211110000 000 00
Q ss_pred CCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhc---C-CCeEEEEEecC---CCCCeEEEEecCchhhH
Q 020632 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSK---C-PGFLKLKIQST---YGPPVAFVDFQVTCVCV 283 (323)
Q Consensus 219 ~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~---f-G~i~~v~i~~~---~~~g~aFV~F~~~~~A~ 283 (323)
....+ ....-.|-.++||+++|+.|+.++|.. . |+.+.|-+++. +-.|=|||.|...++|+
T Consensus 153 --~~fls--k~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 153 --APFLS--KENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred --CCCCC--cccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHH
Confidence 00000 000234778999999999999999963 2 34455555432 23678999999999999
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.52 E-value=0.00026 Score=53.78 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=37.9
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
+.|+|.++...++-++|+++|+.||.|.-|.+... .--|||-|.+.++|+.|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G----~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG----DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC----CCEEEEEECCcchHHHHHHHHH
Confidence 57899999999999999999999999888877632 2249999999999999999886
No 151
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.45 E-value=0.0012 Score=64.04 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=52.9
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCc-eEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v-~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
..+.|-+.|+|++++.+||.++|..|-.+ .+|+++.+ .+.-.|-|.|-|++.++|.+|...|+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~ 930 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLD 930 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccc
Confidence 34688999999999999999999999874 45666654 45566789999999999999999986
No 152
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.38 E-value=0.0004 Score=63.76 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=50.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-----------------CCCeEEEEecCchhhH-HHhhC
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----------------GPPVAFVDFQVTCVCV-CHILF 288 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-----------------~~g~aFV~F~~~~~A~-~~~ln 288 (323)
+++||.+.|||.+-.-+-|.+||+.+|.|+.|+|...+ .+-+|||+|++.+.|. ..+|+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 48999999999998889999999999999999995431 1348999999999999 55544
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.32 E-value=0.00062 Score=44.87 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=41.6
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHH
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~ 125 (323)
+.|-|.+.+.+..+. +...|..||+|..+.+. ....+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 678899998777654 55588899999888776 23346999999999999985
No 154
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.20 E-value=0.00026 Score=67.40 Aligned_cols=82 Identities=12% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
.|.-+..+++|+|.||-.-.|.-+|++|+.+-|+ |.+..|- +-|..|||.|.+.++|. +.+|||...-.+..+.|
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD--kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD--KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH--HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3445667999999999999999999999996554 5555332 23368999999999999 99999999998888999
Q ss_pred EEEEcCc
Q 020632 301 SSNWDQW 307 (323)
Q Consensus 301 ~V~~ak~ 307 (323)
.+.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999754
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.18 E-value=0.00078 Score=60.07 Aligned_cols=75 Identities=11% Similarity=0.205 Sum_probs=60.4
Q ss_pred cCeEEEcCCCCCCCHHH----H--HHHhhcCCCeEEEEEecCCC-----CCeE--EEEecCchhhH--HHhhCCceeccC
Q 020632 231 CATLFVANLGPTCTEQE----L--TQVFSKCPGFLKLKIQSTYG-----PPVA--FVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~----L--~~~F~~fG~i~~v~i~~~~~-----~g~a--FV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
.+-+||-+|++.+-.|+ | .++|.+||.|+.|.+.++-. .+.+ ||.|.+.|+|. |.+.+|..+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--- 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--- 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc---
Confidence 56689999999887776 2 46899999999988854331 1223 99999999999 999999999
Q ss_pred CCCceEEEEcCcc
Q 020632 296 LSDGISSNWDQWR 308 (323)
Q Consensus 296 ~g~~l~V~~ak~~ 308 (323)
|||-|+..|.-.+
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 7799999997544
No 156
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.11 E-value=0.0032 Score=44.95 Aligned_cols=61 Identities=28% Similarity=0.456 Sum_probs=44.3
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhCCCCeEEE
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLYI 136 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~~g~~l~v 136 (323)
+..||+ +|..+...||.++|+.||.|...=|. ++. |||...+.+.|..++..+......+|
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-dTS-----AfV~l~~r~~~~~v~~~~~~~~~y~i 70 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-DTS-----AFVALHNRDQAKVVMNTLKKNSSYRI 70 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-TTE-----EEEEECCCHHHHHHHHHHTT-SSSEE
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-CCc-----EEEEeecHHHHHHHHHHhccCCceEE
Confidence 555666 99999999999999999997655444 444 99999999999999999973333333
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.10 E-value=0.0014 Score=58.55 Aligned_cols=75 Identities=15% Similarity=0.345 Sum_probs=59.1
Q ss_pred cceEEEeCCCCCCchHH----H--HHHhhcCCCceEEEeccCCC---CCCce--EEEEEccHHHHHHHHHHhC----CCC
Q 020632 68 VRTLFVAGLPEDVKPRE----I--YNLFREFPGYESSHLRSSTQ---NSQPF--AFAVFSDQQSALGAMYALN----KGS 132 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~----L--~~~F~~~G~v~~~~~~~~~~---~~~g~--aFV~f~~~~~A~~A~~~l~----~g~ 132 (323)
..-+||-+|+..+-.++ | .++|.+||.|..+.+..++. ...+. .||+|.+.++|.+||.... +||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999888776 3 47999999998888776531 11122 4999999999999999998 999
Q ss_pred eEEEEEccCC
Q 020632 133 TLYIDLAKSN 142 (323)
Q Consensus 133 ~l~v~~a~~~ 142 (323)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999887544
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.06 E-value=0.0013 Score=59.34 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=65.3
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceE--------EEe--ccCCCCCCceEEEEEccHHHHHHHHHHhC----C
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYES--------SHL--RSSTQNSQPFAFAVFSDQQSALGAMYALN----K 130 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~--------~~~--~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~ 130 (323)
...+-||||-+|+..+++.+|.++|.++|.|.. +.| ...+...+|=|.|.|.|...|+.|+..++ .
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455789999999999999999999999998521 111 11356678889999999999999999998 8
Q ss_pred CCeEEEEEccCCCc
Q 020632 131 GSTLYIDLAKSNSR 144 (323)
Q Consensus 131 g~~l~v~~a~~~~~ 144 (323)
+.+|+|.+|.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 89999988866543
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.04 E-value=0.00076 Score=60.78 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=65.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEE----ecCCCCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKI----QSTYGPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~--------v~i----~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
....+|||-+|+..+++++|.+.|.++|.|+. |+| .+...|+-|.|.|+|...|+ +.-++++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34678999999999999999999999998764 222 22335789999999999999 99999999977
Q ss_pred CCCCceEEEEcCccc
Q 020632 295 KLSDGISSNWDQWRL 309 (323)
Q Consensus 295 ~~g~~l~V~~ak~~~ 309 (323)
..|+|.+|..+.
T Consensus 144 ---n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 ---NTIKVSLAERRT 155 (351)
T ss_pred ---CCchhhhhhhcc
Confidence 899999986554
No 160
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.02 E-value=0.0015 Score=64.31 Aligned_cols=7 Identities=43% Similarity=0.453 Sum_probs=2.9
Q ss_pred CCCCCCc
Q 020632 75 GLPEDVK 81 (323)
Q Consensus 75 nLp~~~~ 81 (323)
.||+..+
T Consensus 609 vlP~gLk 615 (1102)
T KOG1924|consen 609 VLPFGLK 615 (1102)
T ss_pred cCCCCCC
Confidence 3444443
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.96 E-value=0.00061 Score=61.22 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=61.6
Q ss_pred ceEE-EeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 69 RTLF-VAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 69 ~tlf-V~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++| |+||++.+++++|+..|..+|.|..+.+... +....|||||.|.+...+..++.. + .++++.+.+...
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 5565 9999999999999999999999988887764 567889999999999999999885 4 888888876643
No 162
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=5.6e-05 Score=74.68 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=99.0
Q ss_pred cceEEEeCCCCCCchH-HHHHHhhcCCCceEEEeccCC--CCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPR-EIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~-~L~~~F~~~G~v~~~~~~~~~--~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~ 141 (323)
.+...+.|+-....+. ..+..|..+|.++.+.+..++ .....++++.+....+++.|...-. .++.+.+..+..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3667788887777666 567899999999988877532 2233478999999888888765442 333333332221
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
... ....
T Consensus 651 ~~~--~~~~----------------------------------------------------------------------- 657 (881)
T KOG0128|consen 651 EEK--EENF----------------------------------------------------------------------- 657 (881)
T ss_pred hhh--hhcc-----------------------------------------------------------------------
Confidence 110 0000
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEe----cCCCCCeEEEEecCchhhH-HHhhCC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQ----STYGPPVAFVDFQVTCVCV-CHILFS 289 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~----~~~~~g~aFV~F~~~~~A~-~~~lnG 289 (323)
...+.+.-...++||.||+..+.+++|...|..+|.+..+++. +++-+|+|+|+|...++|. ..+++-
T Consensus 658 kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 658 KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 0000000114568999999999999999999999998888774 3344799999999999998 444433
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.95 E-value=0.0014 Score=60.39 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=53.9
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-------CC-C-------CCceEEEEEccHHHHHHHHHHhC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-------TQ-N-------SQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-------~~-~-------~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
..|||.+-|||.+-.-+.|.+||..+|.|..|+|... .+ . .+-+|+|+|+..+.|.+|.+.++
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 5699999999999999999999999999998887643 11 1 13479999999999999999997
No 164
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0023 Score=60.35 Aligned_cols=63 Identities=27% Similarity=0.370 Sum_probs=54.6
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhh-cCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHh
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFR-EFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYAL 128 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~-~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l 128 (323)
+..+|||||+||.-++.+||..+|+ .||.|..+-|..+ -+.-+|-|=|+|.+..+--+||++-
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 4569999999999999999999999 6999888877765 3446788999999999999998764
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.93 E-value=0.00021 Score=61.38 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=64.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC------------CCC----eEEEEecCchhhH--HHhhCCcee
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY------------GPP----VAFVDFQVTCVCV--CHILFSLLF 292 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~------------~~g----~aFV~F~~~~~A~--~~~lnG~~l 292 (323)
..+||++|||+.++-..|+++|++||.|-+|.|.... +.. -|.|+|.+-..|. ...|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4579999999999999999999999999999985322 111 3789999999999 889999999
Q ss_pred ccCCCCceEEEEcCccccccccCcceee
Q 020632 293 KEKLSDGISSNWDQWRLRSWIQSFKCVE 320 (323)
Q Consensus 293 ~g~~g~~l~V~~ak~~~~~~~~~~~~~~ 320 (323)
+|. +.-.+.+.-++++- -..++|+.
T Consensus 154 ggk--k~S~~~~dlWNmKY-LprFKW~h 178 (278)
T KOG3152|consen 154 GGK--KKSPFRDDLWNMKY-LPRFKWVH 178 (278)
T ss_pred CCC--CCCchHHhhhhhhh-ccCcchHH
Confidence 873 44444433333221 33555553
No 166
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.89 E-value=0.00037 Score=69.40 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=69.5
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 226 KNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 226 ~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
.+...+.|||++||+..+++.+|+..|..+|.|.+|.|.+.. ...||||.|.+...+- ..++.|..|.. ..+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~---g~~ 443 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN---GTH 443 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc---Ccc
Confidence 333468899999999999999999999999999999995432 2249999999999998 88999999977 577
Q ss_pred EEEEc--Ccccccccc
Q 020632 301 SSNWD--QWRLRSWIQ 314 (323)
Q Consensus 301 ~V~~a--k~~~~~~~~ 314 (323)
++.+. +....++.+
T Consensus 444 r~glG~~kst~ttr~~ 459 (975)
T KOG0112|consen 444 RIGLGQPKSTPTTRLQ 459 (975)
T ss_pred cccccccccccceeec
Confidence 77766 555555444
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.84 E-value=0.0029 Score=41.64 Aligned_cols=49 Identities=8% Similarity=0.197 Sum_probs=39.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV 283 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~ 283 (323)
+.|-|.+.+.+..+. +...|..||.|..+.+.. ...+.+|.|.+..+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae 50 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAE 50 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHH
Confidence 457888888877655 555899999999988873 3379999999999986
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.58 E-value=0.012 Score=46.96 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCcCeEEEcCCC------CCCCH---HHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCceeccCCCC
Q 020632 229 TPCATLFVANLG------PTCTE---QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSD 298 (323)
Q Consensus 229 ~~~~tLfV~nLp------~~~te---~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~ 298 (323)
|+..||.|.=+. ....+ .+|.+.|+.||.+.-||++. +.=.|.|.+-++|. ...|+|.+|.| +
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~dg~~v~g---~ 97 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSLDGIQVNG---R 97 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHGCCSEETT---E
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHccCCcEECC---E
Confidence 346677776555 12232 27888899999999999987 67899999999999 99999999976 8
Q ss_pred ceEEEEc
Q 020632 299 GISSNWD 305 (323)
Q Consensus 299 ~l~V~~a 305 (323)
.|+|+..
T Consensus 98 ~l~i~LK 104 (146)
T PF08952_consen 98 TLKIRLK 104 (146)
T ss_dssp EEEEEE-
T ss_pred EEEEEeC
Confidence 9999874
No 169
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.56 E-value=0.013 Score=46.17 Aligned_cols=68 Identities=24% Similarity=0.301 Sum_probs=53.6
Q ss_pred cceEEEeCCCCCCchH----HHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPR----EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~----~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (323)
-.||.|+-|..++.-. .+...++.||+|++|.+.-+. -|.|.|.|..+|-+|+.+++ -|..+++.|-.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-----savVvF~d~~SAC~Av~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-----SAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-----eEEEEehhhHHHHHHHHhhcCCCCCceEEeeccc
Confidence 3899999887765433 345566789999999876322 39999999999999999999 78888888753
No 170
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.56 E-value=0.0029 Score=57.64 Aligned_cols=69 Identities=16% Similarity=0.324 Sum_probs=58.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--C-----CCeEEEEecCchhhH-HHhhCCceeccCCCCceEEE
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--G-----PPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~-----~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~ 303 (323)
..|-|.||.+++|.+++..||.-.|.|.+++|...- . .-.|||.|.|...+. .+.|.++.+-+ +.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvd---raliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVD---RALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeee---eeEEEE
Confidence 369999999999999999999999999999996522 1 238999999999999 88898888876 565554
No 171
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.55 E-value=0.0041 Score=60.34 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=52.2
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEE
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (323)
-++||+|+-..+..+-++.+...+|-|.++.... |||.+|.++..+.+|+..+. +|+.+.+.
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 7999999999999999999999999876554331 79999999999999998887 66666554
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.48 E-value=0.0083 Score=44.97 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=50.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEE-------------EecCCCCCeEEEEecCchhhH-HHhhCCceeccCC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLK-------------IQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKL 296 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~-------------i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~ 296 (323)
...|.|-+.|+.. ...|.+.|++||.|.+.. +.. ..++--|.|++..+|. ...-||..|.|+
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~- 81 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQKNGTIFSGS- 81 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTTTTEEETTC-
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHhCCeEEcCc-
Confidence 4558888999884 567889999999998875 222 3379999999999999 888999999762
Q ss_pred CCceEEEEcCc
Q 020632 297 SDGISSNWDQW 307 (323)
Q Consensus 297 g~~l~V~~ak~ 307 (323)
--+-|.|.++
T Consensus 82 -~mvGV~~~~~ 91 (100)
T PF05172_consen 82 -LMVGVKPCDP 91 (100)
T ss_dssp -EEEEEEE-HH
T ss_pred -EEEEEEEcHH
Confidence 2333666643
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.46 E-value=0.0061 Score=54.75 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=52.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCC--ceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPG--YESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~--v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
...-.+|||||-|.+|+++|.+.+...|- +..+++..+ ++.++|||+|...+..+.++-++.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP 145 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP 145 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc
Confidence 34467899999999999999999988886 333433332 56799999999999999999999987
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.0047 Score=58.84 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=54.3
Q ss_pred cCeEEEcCCCC--CCCHH----HHHHHhhcCCCeEEEEEe---cCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCc
Q 020632 231 CATLFVANLGP--TCTEQ----ELTQVFSKCPGFLKLKIQ---STYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDG 299 (323)
Q Consensus 231 ~~tLfV~nLp~--~~te~----~L~~~F~~fG~i~~v~i~---~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~ 299 (323)
..+|+|.|+|- ...-+ -|..+|+++|.|..+.+- .++.+||.|++|.+..+|. +..|||+.|--+ ..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn--Ht 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN--HT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc--ce
Confidence 56799999984 22222 356789999998888774 3456899999999999999 999999999553 44
Q ss_pred eEEE
Q 020632 300 ISSN 303 (323)
Q Consensus 300 l~V~ 303 (323)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 4444
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.39 E-value=0.02 Score=38.71 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcC----CCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHh
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREF----PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 128 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~----G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l 128 (323)
..|+|+++. +++.++|+.+|..| +. ..|....++. |-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDtS-----cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDTS-----CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCCc-----EEEEECCHHHHHHHHHcC
Confidence 689999985 47889999999999 44 3455554555 999999999999999865
No 176
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.39 E-value=0.0025 Score=57.17 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=59.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEec----CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCP--GFLKLKIQS----TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG--~i~~v~i~~----~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.-++||+||-|.+|++||.+.....| .|.++++.. +.+||||.|..-+..+.. ++-|--+.|+|. .+..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ--~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ--SPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC--CCeee
Confidence 45699999999999999999888765 456666643 447899999997765555 899999999986 67777
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
.|.|..
T Consensus 158 ~~NK~~ 163 (498)
T KOG4849|consen 158 SYNKTN 163 (498)
T ss_pred ccchhh
Confidence 776543
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.019 Score=54.80 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=55.1
Q ss_pred CcceEEEeCCCCCCch--H----HHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC-----CCCeE
Q 020632 67 EVRTLFVAGLPEDVKP--R----EIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN-----KGSTL 134 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e--~----~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~-----~g~~l 134 (323)
....|+|.|+|---.. + -|.++|+++|++....+... .++.+||.|++|.+..+|+.|++.|| ...++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3478899999854222 2 46789999999887777643 45589999999999999999999998 44555
Q ss_pred EEEE
Q 020632 135 YIDL 138 (323)
Q Consensus 135 ~v~~ 138 (323)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 5543
No 178
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.93 E-value=0.0048 Score=53.20 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=51.1
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC----------CCCCc----eEEEEEccHHHHHHHHHHhC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST----------QNSQP----FAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~----------~~~~g----~aFV~f~~~~~A~~A~~~l~ 129 (323)
-.||+++||..++-.-|+++|++||.|-.|.|.... +.+.. =|+|+|.+...|.++.+.||
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999888875431 11111 38999999999999999997
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.83 E-value=0.024 Score=47.33 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=49.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhc-CCCe---EEEEEecCC------CCCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSK-CPGF---LKLKIQSTY------GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~-fG~i---~~v~i~~~~------~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
...|.|++||+++||+++.+.++. +++- ..+.-.... .-.-|+|.|.+.++.. +..++|+.+.++-|.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 457999999999999999998887 7765 334321111 1126999999999988 999999998765222
Q ss_pred --ceEEEEcC
Q 020632 299 --GISSNWDQ 306 (323)
Q Consensus 299 --~l~V~~ak 306 (323)
.-.|+||-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 34677763
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.71 E-value=0.016 Score=55.59 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=55.8
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCC-ceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC-------CCCeEEEEEcc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-------KGSTLYIDLAK 140 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~-v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~-------~g~~l~v~~a~ 140 (323)
+.|||.||=.-+|.-+|+.|+.+-|. |+.. .+ +.-++. |||.|.+.++|.+-+.+|+ +.+.|.+.|+.
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-DkIKSh--CyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DKIKSH--CYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhccCchHHH-HH-HHhhcc--eeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 89999999999999999999996555 5443 22 112233 9999999999999999998 88889998875
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
..
T Consensus 521 ~d 522 (718)
T KOG2416|consen 521 AD 522 (718)
T ss_pred hh
Confidence 43
No 181
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.54 E-value=0.033 Score=48.22 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=41.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE-ecC--CCCCeEEEEecCchhhH
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKI-QST--YGPPVAFVDFQVTCVCV 283 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i-~~~--~~~g~aFV~F~~~~~A~ 283 (323)
.|||.||..-++.+.|.+.|+.||.|....+ +.+ +..+-++|.|...-.|.
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~ 86 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNAR 86 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHH
Confidence 4999999999999999999999999876444 322 23457899999988888
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.53 E-value=0.03 Score=49.30 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=55.2
Q ss_pred CcCeEEEcCC--CCCCC---HHHHHHHhhcCCCeEEEEEecCCC-----CCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 230 PCATLFVANL--GPTCT---EQELTQVFSKCPGFLKLKIQSTYG-----PPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 230 ~~~tLfV~nL--p~~~t---e~~L~~~F~~fG~i~~v~i~~~~~-----~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
++++|.++|+ +-.++ ++++++.+.+||.|..|-|....+ .---||+|+..++|. +..|||+.++|
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGG--- 356 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGG--- 356 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecc---
Confidence 4555666766 23444 357889999999999998864332 235799999999999 99999999977
Q ss_pred CceEEEEc
Q 020632 298 DGISSNWD 305 (323)
Q Consensus 298 ~~l~V~~a 305 (323)
+.++--|-
T Consensus 357 r~v~A~Fy 364 (378)
T KOG1996|consen 357 RVVSACFY 364 (378)
T ss_pred eeeeheec
Confidence 77776664
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.47 E-value=0.0085 Score=51.79 Aligned_cols=57 Identities=14% Similarity=0.288 Sum_probs=44.8
Q ss_pred HHHHHhh-cCCCceEEEeccCCCC-CCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 84 EIYNLFR-EFPGYESSHLRSSTQN-SQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 84 ~L~~~F~-~~G~v~~~~~~~~~~~-~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+|...|+ +||+|+.+.+..+... -.|=++|.|...++|++|++.|| .|++|..++..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444445 8999988876655222 34569999999999999999999 99999998864
No 184
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.38 E-value=0.019 Score=49.66 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=52.0
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEE-eccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSH-LRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~-~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
..|||.||..-++-+.|.+-|+.||+|+... +..+..+..+=++|.|...-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 6899999999999999999999999986543 333445556679999999999999999997
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.31 E-value=0.0074 Score=52.16 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=46.3
Q ss_pred HHHHHHhh-cCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 246 QELTQVFS-KCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 246 ~~L~~~F~-~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
|+|...|+ +||.|+++++-.+. -.|-++|.|...++|+ ++.|||..+.| ++|..+|.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G---~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG---RPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC---Ccceeeec
Confidence 44555555 79999999774422 2578999999999999 99999999977 99999986
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.16 E-value=0.11 Score=37.18 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=38.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILF 288 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~ln 288 (323)
.++.+|. .|..+...||.++|+.||.|.---|.. .-|||...+.+.|. +..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT----TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC----CcEEEEeecHHHHHHHHHHhc
Confidence 3455666 999999999999999999976554443 68999999999999 55543
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.00 E-value=0.3 Score=37.28 Aligned_cols=75 Identities=8% Similarity=-0.042 Sum_probs=57.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEecCCCCC--eEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPP--VAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~~~~~g--~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
+..+.+...+..++.++|..+.+.+- .|..+||+++...+ .+.++|.+.++|. ...+||+.+...+....+|-|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 45566677777888888887777664 57788988866422 6899999999999 9999999997765556666654
No 188
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.98 E-value=0.02 Score=52.89 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=53.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 233 TLFVANLGPTCTEQELTQVFSKC--PGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~f--G~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
.||++||.+.++-.+|+.+|..- +.-..+ ++ +.|||||.+.+..-|. ++.++|+.=. -|+.+.|+++-.+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~f-l~---k~gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV---KSGYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcce-ee---ecceeeccCCchhhhhhhHHhhchhhhh--cCceeeccchhhH
Confidence 48999999999999999999874 111111 11 2389999999999999 9999998643 2488888887443
No 189
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.92 E-value=0.016 Score=57.85 Aligned_cols=75 Identities=11% Similarity=-0.007 Sum_probs=65.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
..+.++.|..-..+..-|..+|+.||.|...+..++. ..|.|+|.+.+.|. +++|+|+.+-. .|.+.+|.|||--
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVSV-TGAPSRVSFAKTL 374 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEEecccc
Confidence 3446777888888999999999999999999998866 69999999999999 99999999876 6789999999743
No 190
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.64 E-value=0.19 Score=40.13 Aligned_cols=66 Identities=24% Similarity=0.286 Sum_probs=46.4
Q ss_pred ceEEEeCCC------CCCchH---HHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEE
Q 020632 69 RTLFVAGLP------EDVKPR---EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYI 136 (323)
Q Consensus 69 ~tlfV~nLp------~~~~e~---~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v 136 (323)
-||.|.=+. ....++ +|.+.|+.||.+.-+++... . -+|+|.+-++|.+|++... .|+.|+|
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-~-----mwVTF~dg~sALaals~dg~~v~g~~l~i 101 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-T-----MWVTFRDGQSALAALSLDGIQVNGRTLKI 101 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-C-----EEEEESSCHHHHHHHHGCCSEETTEEEEE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-e-----EEEEECccHHHHHHHccCCcEECCEEEEE
Confidence 677776665 123322 78888999998766665532 2 8999999999999998877 9999999
Q ss_pred EEcc
Q 020632 137 DLAK 140 (323)
Q Consensus 137 ~~a~ 140 (323)
.+..
T Consensus 102 ~LKt 105 (146)
T PF08952_consen 102 RLKT 105 (146)
T ss_dssp EE--
T ss_pred EeCC
Confidence 8653
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.57 E-value=0.083 Score=50.55 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=55.1
Q ss_pred cceEEEeCCCCCCchHHHHHHhhc--CCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFRE--FPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYID 137 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~--~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~ 137 (323)
.|-|.++.||..+.+|+++.||+. +-.+.+|.+-.+.. =||+|++..||+.|.+.|. .|++|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 466789999999999999999985 66688888776655 7999999999999999998 78777543
No 192
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.98 E-value=0.33 Score=36.40 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=40.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEE-eccC--------CCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSH-LRSS--------TQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~-~~~~--------~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
.+.|.|=+.|.. ....+.+.|++||.|.... +... ......+-.|+|.+..+|.+||..-.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG 75 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNG 75 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCC
Confidence 367888889888 5577889999999965443 2111 11345589999999999999997765
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.53 E-value=1.2 Score=33.95 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=50.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCC-ceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~-v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
...+.+...|..++-++|..+.+.+-. |+.++|+++...++-.+.+.|.+.++|+.-....|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhC
Confidence 355666667777887888877777766 77788887777788889999999999999999997
No 194
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.52 E-value=0.28 Score=43.43 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCCceEEEeccC-CCC--CCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 83 REIYNLFREFPGYESSHLRSS-TQN--SQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 83 ~~L~~~F~~~G~v~~~~~~~~-~~~--~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+++++-+++||.|..|.|... +.. ..---||+|...++|.+|+-.|| +|+.++..|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 478899999999877765432 111 11238999999999999999999 88888777653
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.01 E-value=0.47 Score=39.79 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhC--CceeccCCCCceEEEEcCcc
Q 020632 245 EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILF--SLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 245 e~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~ln--G~~l~g~~g~~l~V~~ak~~ 308 (323)
.+.|+++|..|+.+.....++.- +-..|.|.+.++|. ...|+ +..+.| ..|+|-|+...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~g---~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFNG---KRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEETT---EE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccCC---CceEEEEcccc
Confidence 47899999999999988888744 57889999999999 78888 999977 78999998544
No 196
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.47 E-value=0.95 Score=31.82 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHhhcCCCe-----EEEEEecCCCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 241 PTCTEQELTQVFSKCPGF-----LKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 241 ~~~te~~L~~~F~~fG~i-----~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..++..+|..++..-++| -.|++.. .|+||+-....... +..|++..+.| +.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~~~a~~v~~~l~~~~~~g---k~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPEEVAEKVLEALNGKKIKG---KKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-TT-HHHHHHHHTT--SSS-------EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECHHHHHHHHHHhcCCCCCC---eeEEEEEC
Confidence 478888999999987664 4566665 69999998876666 99999999976 89999864
No 197
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.34 E-value=0.17 Score=52.50 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=28.8
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEec
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLR 101 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~ 101 (323)
..++++|-.+-..+..+.|+.+.+.++..-++..+
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~ 105 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTK 105 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhhhh
Confidence 35889999999999999999999999986555444
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.22 E-value=0.31 Score=40.66 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=40.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhc-CCCc---eEEE--eccC--CCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFRE-FPGY---ESSH--LRSS--TQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~-~G~v---~~~~--~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
.+...|.|++||.++||+++.+.++. ++.- ..+. .... .......|||.|.+.+++..-+..++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 34579999999999999999998877 5552 3333 1111 11122359999999999888888875
No 199
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.01 E-value=0.81 Score=36.31 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=52.7
Q ss_pred CCCcCeEEEcCCCCCCC-HHHHHHH---hhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCT-EQELTQV---FSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~t-e~~L~~~---F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
+++-.||.|+=|..++. .+||+++ ++.||.|..|.+.- +..|.|.|.|..+|= +.+++...- |.-++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s~~p----gtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQSRAP----GTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcCCCC----CceEE
Confidence 34567888887766553 3455554 66699999998764 258999999999998 888877443 36888
Q ss_pred EEEcC
Q 020632 302 SNWDQ 306 (323)
Q Consensus 302 V~~ak 306 (323)
++|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88854
No 200
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.75 E-value=0.9 Score=45.94 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=56.8
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~~ 142 (323)
.+.++-|..-..+...|..+|+.||.+.+....++ ...|.|+|.+.+.|-.|+++++ .|-+.+|.+|+.-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 56677777888899999999999999877765322 2239999999999999999998 7778888888654
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.72 E-value=0.1 Score=47.10 Aligned_cols=75 Identities=5% Similarity=0.061 Sum_probs=57.3
Q ss_pred cCeEEEcCCCCCCCHHHHH---HHhhcCCCeEEEEEecCC----C---CCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 231 CATLFVANLGPTCTEQELT---QVFSKCPGFLKLKIQSTY----G---PPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~---~~F~~fG~i~~v~i~~~~----~---~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
.+-+||-+|+..+..+.+. +.|.+||.|..|.+..+. + ..-++|.|+..++|. |...+|..+. |+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d---g~ 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD---GR 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh---hh
Confidence 3457999999777555443 469999999999886533 1 125899999999998 9999999994 48
Q ss_pred ceEEEEcCcc
Q 020632 299 GISSNWDQWR 308 (323)
Q Consensus 299 ~l~V~~ak~~ 308 (323)
.|+..|+-.+
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 8888887655
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.60 E-value=12 Score=33.44 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=59.9
Q ss_pred CCCCCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC---------CCCCceEEEEEccHHHHHH----HHHHh
Q 020632 62 YGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST---------QNSQPFAFAVFSDQQSALG----AMYAL 128 (323)
Q Consensus 62 ~~~~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~---------~~~~g~aFV~f~~~~~A~~----A~~~l 128 (323)
+.++-..|.|...|+..+++-..+..-|.+||+|++|.+.... .+......+.|-+.+.+-. .++.|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 4445556999999999999999999999999999999887543 1223468999999877543 22223
Q ss_pred C------CCCeEEEEEccC
Q 020632 129 N------KGSTLYIDLAKS 141 (323)
Q Consensus 129 ~------~g~~l~v~~a~~ 141 (323)
. ....|.+.|..-
T Consensus 89 sEfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHHhcCCcceeEEEEEE
Confidence 2 778888888754
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.34 E-value=0.65 Score=44.73 Aligned_cols=61 Identities=8% Similarity=0.175 Sum_probs=52.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhc--CCCeEEEEEecCCCCCeEEEEecCchhhH---------HHhhCCceecc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSK--CPGFLKLKIQSTYGPPVAFVDFQVTCVCV---------CHILFSLLFKE 294 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~--fG~i~~v~i~~~~~~g~aFV~F~~~~~A~---------~~~lnG~~l~g 294 (323)
.++|.++-|+..+-+|+++.||+. +..+++|.+-... -=||+|++..||+ +++++|+.|.-
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 567889999999999999999987 7788899886533 4589999999998 67889998864
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.31 E-value=1.3 Score=41.71 Aligned_cols=75 Identities=8% Similarity=0.028 Sum_probs=61.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEecCCC--CCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKC-PGFLKLKIQSTYG--PPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~f-G~i~~v~i~~~~~--~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
+..|+|-.+|..+|-.||..++..| -.|..+++++++- +-...|.|.+.++|. -.++||+.+...|-.-.+|-|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V 153 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYV 153 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEE
Confidence 7889999999999999999998875 4688999988543 226899999999999 8999999997765555555554
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.64 E-value=0.35 Score=45.55 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=58.3
Q ss_pred cCeEEEcCCCCCC-CHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEcCcc
Q 020632 231 CATLFVANLGPTC-TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 231 ~~tLfV~nLp~~~-te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
.+.|-+.-.+... |-++|...|.+||.|..|.+.-. .--|.|+|.+..+|. ....+|..|.+ +.|+|-|-+..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~s~~avlnn---r~iKl~whnps 446 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYASHGAVLNN---RFIKLFWHNPS 446 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhccccceecC---ceeEEEEecCC
Confidence 4445555556544 55899999999999999988653 358999999999998 88889999965 99999997653
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.47 E-value=0.2 Score=45.21 Aligned_cols=75 Identities=13% Similarity=0.301 Sum_probs=55.3
Q ss_pred cceEEEeCCCCCCchHHHH---HHhhcCCCceEEEeccCC-----CCCCceEEEEEccHHHHHHHHHHhC----CCCeEE
Q 020632 68 VRTLFVAGLPEDVKPREIY---NLFREFPGYESSHLRSST-----QNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~---~~F~~~G~v~~~~~~~~~-----~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~ 135 (323)
.+-+||-+|+..+..+.+. +.|.+||.|..+.+..+. .....-++|+|...++|..||...+ .|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3667899998877666543 588899998887766532 1122359999999999999999988 778777
Q ss_pred EEEccCC
Q 020632 136 IDLAKSN 142 (323)
Q Consensus 136 v~~a~~~ 142 (323)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7666544
No 207
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.00 E-value=0.46 Score=46.64 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
++..++||+|+...+.++-++.+...+|-|..++... |||.+|..+..+. +..++-..+.+ ..+.+.-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~---~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDD---QKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCc---chhhccc
Confidence 4577899999999999999999999999998887665 9999999998888 66666556643 5555554
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.58 E-value=1.2 Score=37.32 Aligned_cols=55 Identities=22% Similarity=0.160 Sum_probs=38.0
Q ss_pred hHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEcc
Q 020632 82 PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (323)
Q Consensus 82 e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (323)
.+.|+++|..|+.+....... +.+-..|.|.+.++|.+|...|+ .|..|++.++.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 478999999999965544432 23339999999999999999986 67788888873
No 209
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.46 E-value=2.1 Score=28.99 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=38.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC----CCeEEEEEecCCCCCeEEEEecCchhhH--HHhh
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKC----PGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHIL 287 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~f----G~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~l 287 (323)
..|+|++++. ++.++|+..|..| + ...|.-+.+. -+=|.|.+.+.|. +.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~-~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEG-PFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCC-CceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 4599999965 6668899999999 4 3456666544 5678899999888 5443
No 210
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=88.02 E-value=0.56 Score=41.36 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.8
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHH
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQ 119 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~ 119 (323)
..-||++||+.++...+|+..+.+-+.+ -|....+..+|-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~---pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT---PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC---ceeEeeecCCcceeEecCCcc
Confidence 4669999999999999999999887653 233334455666999998764
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.01 E-value=0.93 Score=33.07 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhh
Q 020632 231 CATLFVANLGPTCTEQELTQVFS 253 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~ 253 (323)
.++|-|.|||...+|++|++..+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 67899999999999999998754
No 212
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.92 E-value=0.47 Score=44.76 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=53.8
Q ss_pred CcceEEEeCCCCCCch-HHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPEDVKP-REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e-~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~ 141 (323)
+.++|-+.-.++..+. ++|...|.+||.|+.|++.... . -|.|+|.+..+|-.|...-. +++.|+|-|-..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~--~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--L--HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--h--hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3466666666666544 5899999999999999887651 1 29999999999966654443 999999999754
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.74 E-value=4.6 Score=39.37 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=59.1
Q ss_pred CCcCeEEEcCCCC-CCCHHHHHHHhhcC----CCeEEEEEec--------------CC----------------------
Q 020632 229 TPCATLFVANLGP-TCTEQELTQVFSKC----PGFLKLKIQS--------------TY---------------------- 267 (323)
Q Consensus 229 ~~~~tLfV~nLp~-~~te~~L~~~F~~f----G~i~~v~i~~--------------~~---------------------- 267 (323)
..+++|-|.||.| .+..++|.-+|+.| |.|..|.|.. +.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3588899999998 67889999999987 5788998831 11
Q ss_pred -------------CC--CeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 268 -------------GP--PVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 268 -------------~~--g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
+. -||.|+|.+++.|. -....|..+.. .+..|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs-S~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES-SANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc-ccceeeeee
Confidence 00 18999999999999 78999999987 355666655
No 214
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=81.00 E-value=4.9 Score=40.49 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=11.4
Q ss_pred ceEEEeCCCCCCch----HHHHHHhhc
Q 020632 69 RTLFVAGLPEDVKP----REIYNLFRE 91 (323)
Q Consensus 69 ~tlfV~nLp~~~~e----~~L~~~F~~ 91 (323)
+|+|-.-+++.+.+ +++++.|.-
T Consensus 386 ~tvf~~~~De~Il~~lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 386 GTVFHELNDEKILEALDFSRFEEQFKI 412 (830)
T ss_pred cchhhhhhHHHHHHhhhHHHHHHHHHh
Confidence 45555555544444 245555544
No 215
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=79.18 E-value=2.6 Score=28.07 Aligned_cols=47 Identities=13% Similarity=-0.135 Sum_probs=27.0
Q ss_pred CCCeEEEEecCc-hhhH--HHhhCCceeccCCCCceEEEEcCccccccccCccee
Q 020632 268 GPPVAFVDFQVT-CVCV--CHILFSLLFKEKLSDGISSNWDQWRLRSWIQSFKCV 319 (323)
Q Consensus 268 ~~g~aFV~F~~~-~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~~~~~~~~~~~~ 319 (323)
++|||||..++. ++-- -..|++..= |..+.|...+ +.+.++.+.+.+
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~----gD~V~v~i~~-~~~~~~~eg~vv 56 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMD----GDKVLVRITP-PSRGKRPEGEVV 56 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-T----T-EEEEEEEE-SSSEEEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCC----CCEEEEEEec-CCCCCCCCEEEE
Confidence 459999999982 2222 677777663 3577777665 444555555544
No 216
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.65 E-value=5 Score=35.93 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=45.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCceecc
Q 020632 234 LFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKE 294 (323)
Q Consensus 234 LfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g 294 (323)
|-|.+.++.-. ..|..+|++||.|.+...- .+.++-.|.|.+.-+|+ ...-||++|.+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALskng~ii~g 258 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSKNGTIIDG 258 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhhcCeeecc
Confidence 55667776543 5688999999998765443 44479999999999999 88889999976
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.47 E-value=5.1 Score=35.89 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=37.4
Q ss_pred EeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 73 VAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 73 V~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
|-+++..-. ..|..+|++||.|.+...-. +..+-+|.|.++-+|++||....
T Consensus 202 VfGFppg~~-s~vL~~F~~cG~Vvkhv~~~----ngNwMhirYssr~~A~KALskng 253 (350)
T KOG4285|consen 202 VFGFPPGQV-SIVLNLFSRCGEVVKHVTPS----NGNWMHIRYSSRTHAQKALSKNG 253 (350)
T ss_pred EeccCccch-hHHHHHHHhhCeeeeeecCC----CCceEEEEecchhHHHHhhhhcC
Confidence 334544432 46778999999976655442 23379999999999999987764
No 218
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.25 E-value=11 Score=25.85 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=34.0
Q ss_pred CCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 79 DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 79 ~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
.++-++|+.-+..|+-. .|. ...++ =||.|.|..+|++|....+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~-~d~tG-----fYIvF~~~~Ea~rC~~~~~ 54 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR-DDRTG-----FYIVFNDSKEAERCFRAED 54 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE-ecCCE-----EEEEECChHHHHHHHHhcC
Confidence 56778999999999743 232 32344 6999999999999998874
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=74.36 E-value=4 Score=32.70 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=29.1
Q ss_pred EEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEecCCC
Q 020632 234 LFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYG 268 (323)
Q Consensus 234 LfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~~~~ 268 (323)
|-|.|||.. .+++-|+.+-+.+|.+.++...+.++
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~ 142 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKR 142 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCc
Confidence 567899975 78899999999999999998876443
No 220
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.25 E-value=9.9 Score=36.00 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=54.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCC-ceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~-v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
.+.|+|=.+|..++-.||..|+..+-. |..+++.+++-.++-...|.|.+.++|..-.+.+|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcC
Confidence 689999999999999999999987776 77777777766677789999999999999999998
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.15 E-value=8.4 Score=35.88 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=47.7
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCc-eEEEeccCCCCCCceEEEEEccHHHHHHHHHHh
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 128 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v-~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l 128 (323)
.+--+.|=|.++|.....++|..+|+.|++- -.|+...++. ||-.|.+...|..||..-
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdth-----alaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTH-----ALAVFSSVNRAAEALTLK 447 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecce-----eEEeecchHHHHHHhhcc
Confidence 3446889999999999999999999999982 2344454555 999999999999998664
No 222
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.71 E-value=21 Score=24.84 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=32.4
Q ss_pred CCCchHHHHHHhhcCCC-----ceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 78 EDVKPREIYNLFREFPG-----YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 78 ~~~~e~~L~~~F~~~G~-----v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
..++..+|..++..-+. |-.+.|..+ |+||+-... .|+.+++.|+ .|+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46788889888887766 345555522 589988665 6777888887 9999998865
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=71.27 E-value=12 Score=33.27 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=40.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV 283 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~ 283 (323)
..-|+|+||+.++...||+..+.+-+. .-++|.=++..+-||.+|-|...+-
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswkg~~~k~flh~~~~~~~~ 381 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWKGHFGKCFLHFGNRKGVP 381 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCC-CceeEeeecCCcceeEecCCccCCC
Confidence 344999999999999999999998765 3445544455689999999887654
No 224
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=64.03 E-value=14 Score=26.78 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=34.4
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFS 116 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~ 116 (323)
.-|||||+...+.|.-...+.+..+.-..+.+-.... .+||+|-+.-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeC
Confidence 5699999999999887777777666544444443333 8899998873
No 225
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.46 E-value=13 Score=33.20 Aligned_cols=73 Identities=11% Similarity=0.209 Sum_probs=57.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-----------CCCeEEEEecCchhhH------HHhhCCc--e
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----------GPPVAFVDFQVTCVCV------CHILFSL--L 291 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-----------~~g~aFV~F~~~~~A~------~~~lnG~--~ 291 (323)
.+.|...|+..+++-..+...|-+||.|+.|.++.+. ......+.|-+.+.+. ++.|+-+ .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 6779999999999999999999999999999998644 1237789999999988 4444432 3
Q ss_pred eccCCCCceEEEEcC
Q 020632 292 FKEKLSDGISSNWDQ 306 (323)
Q Consensus 292 l~g~~g~~l~V~~ak 306 (323)
|.+ ..|+|+|..
T Consensus 95 L~S---~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKS---ESLTLSFVS 106 (309)
T ss_pred cCC---cceeEEEEE
Confidence 444 788888864
No 226
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=60.69 E-value=29 Score=33.56 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=16.7
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFRE 91 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~ 91 (323)
..+.++|-.-=+-.++...|..+|+.
T Consensus 304 r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 304 RPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred cccchhhhccCcceecHHHHHHHHHH
Confidence 34456665544556777788888874
No 227
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.80 E-value=19 Score=24.27 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.3
Q ss_pred HHHHHHhhcCCCeEEEEEe
Q 020632 246 QELTQVFSKCPGFLKLKIQ 264 (323)
Q Consensus 246 ~~L~~~F~~fG~i~~v~i~ 264 (323)
++||+.|+..|.|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877763
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.80 E-value=8.5 Score=29.66 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=30.4
Q ss_pred eEEEeCCCCC---------CchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHH-HHHHHH
Q 020632 70 TLFVAGLPED---------VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSA-LGAMYA 127 (323)
Q Consensus 70 tlfV~nLp~~---------~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A-~~A~~~ 127 (323)
++.|-|++.. ++.++|++.|+.|..++...+- ....+.|++.|+|.+.-+. ..|+..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~-~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLY-GKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEE-ETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECc-CCCCCcEEEEEEECCChHHHHHHHHH
Confidence 4556666443 3457999999999997655443 3345788999999876553 334443
No 229
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=58.98 E-value=12 Score=34.13 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=27.6
Q ss_pred EEEEEccHHHHHHHHHHhC--CCCeEEEEEccCCCc
Q 020632 111 AFAVFSDQQSALGAMYALN--KGSTLYIDLAKSNSR 144 (323)
Q Consensus 111 aFV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~~~ 144 (323)
|||+|++..+|+.|++.+. ..+.++++.|-...+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCccc
Confidence 7999999999999999877 667778877755444
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.63 E-value=7.4 Score=30.00 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=26.1
Q ss_pred EEEcCCCCC---------CCHHHHHHHhhcCCCeEEEEEec-CCCCCeEEEEecCchhhH
Q 020632 234 LFVANLGPT---------CTEQELTQVFSKCPGFLKLKIQS-TYGPPVAFVDFQVTCVCV 283 (323)
Q Consensus 234 LfV~nLp~~---------~te~~L~~~F~~fG~i~~v~i~~-~~~~g~aFV~F~~~~~A~ 283 (323)
+.|-|++-. .+.++|++.|+.|..++..-+.. ....|++.|+|...-+.-
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHH
Confidence 567777532 35688999999998876444422 223579999999875443
No 231
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=56.60 E-value=8.1 Score=22.99 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHhhcCCC
Q 020632 241 PTCTEQELTQVFSKCPG 257 (323)
Q Consensus 241 ~~~te~~L~~~F~~fG~ 257 (323)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999988653
No 232
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=54.10 E-value=30 Score=32.50 Aligned_cols=9 Identities=22% Similarity=0.446 Sum_probs=4.9
Q ss_pred CHHHHHHHh
Q 020632 244 TEQELTQVF 252 (323)
Q Consensus 244 te~~L~~~F 252 (323)
|.+|....|
T Consensus 471 tkDDaY~~F 479 (487)
T KOG4672|consen 471 TKDDAYNAF 479 (487)
T ss_pred cchHHHHHH
Confidence 555555555
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.96 E-value=26 Score=23.65 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCCceEEEecc
Q 020632 83 REIYNLFREFPGYESSHLRS 102 (323)
Q Consensus 83 ~~L~~~F~~~G~v~~~~~~~ 102 (323)
.+|+++|+..|.|..+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999998877764
No 234
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=53.08 E-value=8.7 Score=33.20 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=29.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKI 263 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i 263 (323)
..++||+-|+|..+|++-|+...++.|.+..+-+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 4778999999999999999999999987655544
No 235
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=52.31 E-value=14 Score=39.29 Aligned_cols=14 Identities=64% Similarity=1.538 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCCC
Q 020632 24 PPPPPPPGGVVAPP 37 (323)
Q Consensus 24 ~p~p~pp~~~~~~~ 37 (323)
|||||||||..+|.
T Consensus 9 ppppppppg~epps 22 (2365)
T COG5178 9 PPPPPPPPGFEPPS 22 (2365)
T ss_pred CcccccCCCCCCCC
Confidence 33444455555443
No 236
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=51.83 E-value=64 Score=22.12 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 242 TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 242 ~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
.++-++|+..+..|+= .+|+ . .+.|| ||.|.|.++|. ....+|..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~-d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--D-DRTGF-YIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--e-cCCEE-EEEECChHHHHHHHHhcCCCEEEE
Confidence 5677899999999953 4443 3 22244 79999999999 88999998866
No 237
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.66 E-value=88 Score=30.91 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCCcceEEEeCCCCC-CchHHHHHHhhcCCC----ceEEEeccC------------CCC---------------------
Q 020632 65 YDEVRTLFVAGLPED-VKPREIYNLFREFPG----YESSHLRSS------------TQN--------------------- 106 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~-~~e~~L~~~F~~~G~----v~~~~~~~~------------~~~--------------------- 106 (323)
....++|-|-|+.|+ +.-.+|..+|+.|-+ |.+|.|-.. .+.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345699999999995 788899999997654 666665321 111
Q ss_pred ----------------CCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEc
Q 020632 107 ----------------SQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLA 139 (323)
Q Consensus 107 ----------------~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a 139 (323)
..-||.|+|.+.+.|.+..+.+. -+..|.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 12389999999999999998886 4455555543
No 238
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=49.15 E-value=23 Score=24.01 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEE
Q 020632 242 TCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFV 274 (323)
Q Consensus 242 ~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV 274 (323)
..-|.+|...|-.-..|+++.|..++ ++|-|||
T Consensus 29 ~~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 29 RLVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 44566788888888999999997655 3688887
No 239
>PF14893 PNMA: PNMA
Probab=48.07 E-value=21 Score=32.87 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=43.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEE-----ecCCCCCeEEEEecCchhhHHHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSK-CPGFLKLKI-----QSTYGPPVAFVDFQVTCVCVCHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~-fG~i~~v~i-----~~~~~~g~aFV~F~~~~~A~~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.+.|.|.+||.+|+++++.+.+.. +-.+-..++ .+..+.-.|+|+|...-+=. +==..|.| .|...+|-
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~---~iP~~i~g-~gg~W~Vv 92 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYS---LIPREIPG-KGGPWRVV 92 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchh---hCchhcCC-CCCceEEE
Confidence 3667999999999999999988765 222223333 22233457888886543322 11122333 34677776
Q ss_pred Ec
Q 020632 304 WD 305 (323)
Q Consensus 304 ~a 305 (323)
|.
T Consensus 93 ~~ 94 (331)
T PF14893_consen 93 FK 94 (331)
T ss_pred ec
Confidence 64
No 240
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=46.53 E-value=19 Score=31.88 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=47.5
Q ss_pred cCeEEEcCCCCC------------CCHHHHHHHhhcCCCeEEEEEe---------cCCC-----CCeE---------EEE
Q 020632 231 CATLFVANLGPT------------CTEQELTQVFSKCPGFLKLKIQ---------STYG-----PPVA---------FVD 275 (323)
Q Consensus 231 ~~tLfV~nLp~~------------~te~~L~~~F~~fG~i~~v~i~---------~~~~-----~g~a---------FV~ 275 (323)
..|||+.+||-. -+|+-|+..|..||.|..|.|. +++. +||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 356777777632 3678899999999999998882 2221 2333 344
Q ss_pred ecCchh-hH-HHhhCCceeccC-CC----CceEEEEcCcc
Q 020632 276 FQVTCV-CV-CHILFSLLFKEK-LS----DGISSNWDQWR 308 (323)
Q Consensus 276 F~~~~~-A~-~~~lnG~~l~g~-~g----~~l~V~~ak~~ 308 (323)
|..-.. |+ +.+|.|..+.-. |+ ..++|.|.+++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 433322 33 677777665431 22 25777777665
No 241
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=46.32 E-value=68 Score=32.76 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.6
Q ss_pred hhcCCC
Q 020632 89 FREFPG 94 (323)
Q Consensus 89 F~~~G~ 94 (323)
|+.|++
T Consensus 403 ~~~~ee 408 (830)
T KOG1923|consen 403 FSRFEE 408 (830)
T ss_pred HHHHHH
Confidence 444444
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=44.64 E-value=32 Score=28.59 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=38.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC---CCCCceEEEEEccHHHHHHHHHHhC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST---QNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~---~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
.|++|.. +.+...++|.++-+ |.+..+.++... ..-+|--||+|.+.+.|.+.++.-.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 4777777 33333334444444 577777776542 2356779999999999998776654
No 243
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.10 E-value=42 Score=31.44 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=43.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEecCCCCCeEEEEecCchhhH-HHhh
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQSTYGPPVAFVDFQVTCVCV-CHIL 287 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~l 287 (323)
-.++|=|.|+|...-.+||..+|+.|++ --+|+.+. + ..||-.|.+...|. ...|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-d--thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-D--THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-c--ceeEEeecchHHHHHHhhc
Confidence 3678999999999988999999999975 22344444 2 48999999999988 6666
No 244
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.94 E-value=7.1 Score=36.83 Aligned_cols=77 Identities=4% Similarity=-0.225 Sum_probs=57.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEcCc
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
..|+..|+..+++++|.-+|..||.|.-+.+.+.. .+-.+||+-.+...-. +..+.-..+++ ..+|+.+++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~~~~~i~~~k~q~~~~---~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKANGPNYIQPQKRQTTFE---SQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccCcccccCHHHHhhhhh---hhhhhhcCch
Confidence 35889999999999999999999999888774422 2337888876655444 77777777777 5888888876
Q ss_pred ccccc
Q 020632 308 RLRSW 312 (323)
Q Consensus 308 ~~~~~ 312 (323)
..-+|
T Consensus 82 s~~~r 86 (572)
T KOG4365|consen 82 SSEKR 86 (572)
T ss_pred hhhhh
Confidence 64443
No 245
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=43.19 E-value=44 Score=24.87 Aligned_cols=48 Identities=8% Similarity=0.152 Sum_probs=32.8
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEcc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD 117 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~ 117 (323)
.-||||++...+.|.--..+-+.++.=..+.+-.. ...+||+|-++.+
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~-~~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT-NTESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC-CCCCCcEEEecCC
Confidence 56999999999988766666666665333333333 3456999988765
No 246
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=42.79 E-value=14 Score=33.95 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=37.2
Q ss_pred hHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC-CC
Q 020632 82 PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-KG 131 (323)
Q Consensus 82 e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~-~g 131 (323)
...+.+++.+.|+|..-.+.+ --+.|.+||-.-..++++++++.|. .|
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~r--tFNmGvG~v~iv~~e~~~~~~~~l~~~g 323 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYR--TFNMGVGMVLIVPEEDAEKALALLKEQG 323 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHH--HhcCccceEEEEcHHHHHHHHHHHHhcC
Confidence 357888888999876444332 2367889999999999999999997 44
No 247
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=41.39 E-value=13 Score=15.35 Aligned_cols=6 Identities=50% Similarity=1.215 Sum_probs=3.9
Q ss_pred CCCCCC
Q 020632 7 PPAGLH 12 (323)
Q Consensus 7 ~~~~~~ 12 (323)
|++|||
T Consensus 2 psmgf~ 7 (10)
T PF08262_consen 2 PSMGFH 7 (10)
T ss_pred Cccccc
Confidence 566765
No 248
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.54 E-value=80 Score=30.27 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 020632 5 YPPPAGLHY 13 (323)
Q Consensus 5 ~~~~~~~~~ 13 (323)
||+|++-.+
T Consensus 411 ~p~pq~qNy 419 (483)
T KOG2236|consen 411 GPSPQQQNY 419 (483)
T ss_pred CCCcccCCC
Confidence 444544443
No 249
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=38.21 E-value=30 Score=30.05 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEe
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHL 100 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~ 100 (323)
..+.++||+-|+|...+++.|..+.+..|.+..+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 345699999999999999999999999997654443
No 250
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=37.48 E-value=18 Score=26.41 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.5
Q ss_pred cceEEEeCCCCCCchHHHHHHhh
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFR 90 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~ 90 (323)
.|+|-|.|||...+|++|++..+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 39999999999999999998765
No 251
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=37.36 E-value=38 Score=32.16 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=4.1
Q ss_pred HHHHhhcC
Q 020632 85 IYNLFREF 92 (323)
Q Consensus 85 L~~~F~~~ 92 (323)
+-.+|.+.
T Consensus 264 ~~AlFaql 271 (480)
T KOG2675|consen 264 RGALFAQL 271 (480)
T ss_pred HHHHHHHH
Confidence 34566653
No 252
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=36.52 E-value=40 Score=28.07 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=45.3
Q ss_pred ceEEEeCCCCCCchH-----HHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCC-eEEEEE
Q 020632 69 RTLFVAGLPEDVKPR-----EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGS-TLYIDL 138 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~-----~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~-~l~v~~ 138 (323)
.++.+-+++..+-.+ ....+|.+|-+..-.++. ++.++--|.|.+.+.|..|...++ .|+ .++.-+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 557777777654433 345667766553322222 344458899999999999999988 444 777777
Q ss_pred ccC
Q 020632 139 AKS 141 (323)
Q Consensus 139 a~~ 141 (323)
+..
T Consensus 87 aQ~ 89 (193)
T KOG4019|consen 87 AQP 89 (193)
T ss_pred ccC
Confidence 654
No 253
>PF14893 PNMA: PNMA
Probab=36.28 E-value=32 Score=31.71 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=43.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhh----cCCCceEE--EeccCCCCCCceEEEEEccHHHHHHHHHHhC-CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFR----EFPGYESS--HLRSSTQNSQPFAFAVFSDQQSALGAMYALN-KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~----~~G~v~~~--~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~-~g~~l~v~~a~ 140 (323)
-|.|.|.+||.+++++||++.+. ..|.+... ++++. .+.--++|+|...-+-...=..+. .|...+|-+-.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~--~~~~aalve~~e~~n~~~iP~~i~g~gg~W~Vv~~p 95 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE--ENAKAALVEFAEDVNYSLIPREIPGKGGPWRVVFKP 95 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh--cccceeeeecccccchhhCchhcCCCCCceEEEecC
Confidence 38999999999999999887765 56664432 22222 222348999876443221111112 67888876653
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.38 E-value=9.9 Score=36.97 Aligned_cols=64 Identities=20% Similarity=0.356 Sum_probs=50.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
.++||++|++++++-++|..+++.+..+..+-+.+.. -..++.|.|.-.-.-. +.+|||..+.+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5679999999999999999999999988887764422 1236778887666655 88999998865
No 255
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=33.58 E-value=61 Score=30.49 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=31.8
Q ss_pred CCCCCCCcCeEEEcCCCC-CCCHHHHHHHhhcC----CCeEEEEE
Q 020632 224 GPKNVTPCATLFVANLGP-TCTEQELTQVFSKC----PGFLKLKI 263 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~-~~te~~L~~~F~~f----G~i~~v~i 263 (323)
.|....+.++|-|-||+| .+...+|.-+|+.| |.|..|.|
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 344455688999999998 67888999999986 56777887
No 256
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.65 E-value=62 Score=28.80 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=26.1
Q ss_pred ceEEEeCCCCC------------CchHHHHHHhhcCCCceEEEec
Q 020632 69 RTLFVAGLPED------------VKPREIYNLFREFPGYESSHLR 101 (323)
Q Consensus 69 ~tlfV~nLp~~------------~~e~~L~~~F~~~G~v~~~~~~ 101 (323)
.|||+.+||-. -+|+-|+..|+.||.|..|.|.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 68888888743 3567899999999998777654
No 257
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=31.69 E-value=45 Score=22.62 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=24.1
Q ss_pred chHHHHHHhhcCCCceEEEeccCCCCCCceEEE
Q 020632 81 KPREIYNLFREFPGYESSHLRSSTQNSQPFAFA 113 (323)
Q Consensus 81 ~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV 113 (323)
-|.+|...|-+-..|..+.|..+++-.+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 345788888777778888887766566666887
No 258
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=31.22 E-value=8.2 Score=37.48 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=46.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
.++||++|+..+++-++|..+++.+-.+..+.+... -+.-..+++|+|.-.-....|+.+||
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 478999999999999999999999887666655432 11223358999987666666666665
No 259
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.76 E-value=40 Score=28.88 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=17.8
Q ss_pred HHHHHHhhc-CCCeEEEEEecCCCCCeEEEEecCc
Q 020632 246 QELTQVFSK-CPGFLKLKIQSTYGPPVAFVDFQVT 279 (323)
Q Consensus 246 ~~L~~~F~~-fG~i~~v~i~~~~~~g~aFV~F~~~ 279 (323)
|+|.+.|.+ ||. ++...-.+.|+||+|++.
T Consensus 89 edL~~EF~~~~~~----~~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGK----NIIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhccc----ccCCccCCCeeEEehhHH
Confidence 344444443 554 333334568999999875
No 260
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=29.77 E-value=73 Score=36.08 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=2.8
Q ss_pred ceEEEeC
Q 020632 69 RTLFVAG 75 (323)
Q Consensus 69 ~tlfV~n 75 (323)
+.+|+..
T Consensus 1742 ~~lfl~T 1748 (2039)
T PRK15319 1742 RNLQMQT 1748 (2039)
T ss_pred Hhhhccc
Confidence 3344433
No 261
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.77 E-value=1.9e+02 Score=19.92 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHh
Q 020632 83 REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 128 (323)
Q Consensus 83 ~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l 128 (323)
.+|.+.+..+| +....+. +...-++.|+-+.+.+.++++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~s--GsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS--GSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE--TTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC--CCCCCCeEEEEECCHHHHHHHHHHH
Confidence 36677778888 3344444 2122457888888999988887766
No 262
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=29.64 E-value=78 Score=23.02 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=29.8
Q ss_pred ceEEEeCCCCCCchHHHHHHhhc-CCCceEEEeccCCCCCCceEEEEEcc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSSTQNSQPFAFAVFSD 117 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~-~G~v~~~~~~~~~~~~~g~aFV~f~~ 117 (323)
.-||||++...+.|.--..+-+. .+.=..+.+- ......||.|-++.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~-~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPKGSLVITW-SSNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEE-eCCCCCCcEEEecCC
Confidence 56999999999887655444444 3332223333 333467888887755
No 263
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.47 E-value=1.6e+02 Score=19.03 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=38.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCch
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTC 280 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~ 280 (323)
||.|.||.-.--...++..+....+|..+.+.... +..-|.|....
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~--~~v~v~~~~~~ 46 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET--KTVTVTYDPDK 46 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEESTTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC--CEEEEEEecCC
Confidence 57888888877788999999999999999987644 68888987665
No 264
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.40 E-value=32 Score=32.20 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=46.8
Q ss_pred CcceEEEeCCCCCCchH--------HHHHHhhc--CCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHH
Q 020632 67 EVRTLFVAGLPEDVKPR--------EIYNLFRE--FPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYA 127 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~--------~L~~~F~~--~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~ 127 (323)
.-|.+|+.++....+.+ ++...|.. .+....+.++++ ....+|.-|++|.....|++.+..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 34788999998776666 89999998 455666666654 345678899999999999988753
No 265
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=27.73 E-value=22 Score=24.43 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCc-eEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 83 REIYNLFREFPGY-ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 83 ~~L~~~F~~~G~v-~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
++|.+.|..+... ..|.+. +|.-|.|.++|-.++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL~---------aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKLK---------AFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhhh---------hccCCCCHHHHHHHHHHhh
Confidence 5777777776553 233444 9999999999888777653
No 266
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.00 E-value=72 Score=29.78 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=48.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEecC------CCCCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQST------YGPPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~~~------~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
...+.|.+||+..++++|.+-...|.. +....+... ...+.|+|.|.+.++-. ...++|+.+..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 345889999999999999888877643 333333311 12357999999999977 889999999775
No 267
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=26.75 E-value=1.7e+02 Score=18.42 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCC-ceEEEeccCCCCCCceEEEEEccHHHHHHHH
Q 020632 83 REIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125 (323)
Q Consensus 83 ~~L~~~F~~~G~-v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~ 125 (323)
.++..+|.+.|- |+.+.+.... ...+..-+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 356677777775 6666654333 46667888888877777665
No 268
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.45 E-value=17 Score=34.37 Aligned_cols=73 Identities=4% Similarity=-0.175 Sum_probs=54.0
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC--CCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~--~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..-|+..|+...++++|.-+|..||-|..+.+...- +...-.+||+-.. +.|..+|..+. .|..+++.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 445788899999999999999999998888776543 3334478887755 45667776665 7777888777543
No 269
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=25.68 E-value=3.2e+02 Score=23.89 Aligned_cols=11 Identities=9% Similarity=-0.064 Sum_probs=5.2
Q ss_pred CCCCCCHHHHH
Q 020632 239 LGPTCTEQELT 249 (323)
Q Consensus 239 Lp~~~te~~L~ 249 (323)
-+.+++-||-+
T Consensus 318 pdedisleerr 328 (341)
T KOG2893|consen 318 PDEDISLEERR 328 (341)
T ss_pred CcccccHHHHh
Confidence 34455544443
No 270
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=24.57 E-value=52 Score=27.42 Aligned_cols=73 Identities=10% Similarity=0.122 Sum_probs=48.6
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 232 ATLFVANLGPTCTE-----QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 232 ~tLfV~nLp~~~te-----~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.++++.+++..+-. ...+++|.+|-...-.++++.. +.--|.|.+.+.|. ...+++..|.+. ..++.-|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~--~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK--NELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC--ceEEEEE
Confidence 44788888865422 2345566666655444445422 35558999999998 888899999762 3788888
Q ss_pred cCcc
Q 020632 305 DQWR 308 (323)
Q Consensus 305 ak~~ 308 (323)
+...
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 7554
No 271
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=24.01 E-value=2e+02 Score=21.16 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=32.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-------CC-CeEEEEE---------ecCCCCC-eEEEEecCchhhH-----HHhhCC
Q 020632 233 TLFVANLGPTCTEQELTQVFSK-------CP-GFLKLKI---------QSTYGPP-VAFVDFQVTCVCV-----CHILFS 289 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~-------fG-~i~~v~i---------~~~~~~g-~aFV~F~~~~~A~-----~~~lnG 289 (323)
++|| |.++++++++..+.++ .| .|..+.. +.+..+| |-++.|.-..++. ...++-
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e 87 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDE 87 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCC
Confidence 3555 4667778777666555 44 4555443 2222334 6888888766655 334455
Q ss_pred cee
Q 020632 290 LLF 292 (323)
Q Consensus 290 ~~l 292 (323)
..|
T Consensus 88 ~Vl 90 (97)
T CHL00123 88 NVL 90 (97)
T ss_pred CeE
Confidence 554
No 272
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=23.47 E-value=27 Score=32.58 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHhhcCCC
Q 020632 84 EIYNLFREFPG 94 (323)
Q Consensus 84 ~L~~~F~~~G~ 94 (323)
.|.+||..||-
T Consensus 50 ~LEdLF~~YGV 60 (386)
T PF01698_consen 50 GLEDLFQGYGV 60 (386)
T ss_dssp -----------
T ss_pred hHHHHHhhccc
Confidence 78999999996
No 273
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=23.17 E-value=39 Score=13.67 Aligned_cols=6 Identities=67% Similarity=1.458 Sum_probs=3.5
Q ss_pred CCcCCC
Q 020632 2 AEYYPP 7 (323)
Q Consensus 2 ~~~~~~ 7 (323)
.||.||
T Consensus 2 ~eYLpP 7 (9)
T PF02757_consen 2 NEYLPP 7 (9)
T ss_pred ccccCC
Confidence 366665
No 274
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.97 E-value=1.6e+02 Score=21.24 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=38.5
Q ss_pred eEEEeCCCCCCchHHHHHHhhc-CCC-ceEEEecc-CCCCCCceEEEEEccHHHHHHHHHHh
Q 020632 70 TLFVAGLPEDVKPREIYNLFRE-FPG-YESSHLRS-STQNSQPFAFAVFSDQQSALGAMYAL 128 (323)
Q Consensus 70 tlfV~nLp~~~~e~~L~~~F~~-~G~-v~~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l 128 (323)
.-|+=..+.+++..++++.++. ||- |..|.... ..+..+ |||.+..-++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KK--A~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKK--AYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEE--EEEEeCCCCcHHHHHHhh
Confidence 3445557899999999999998 553 44443222 222234 999999988888765443
No 275
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=22.87 E-value=73 Score=30.64 Aligned_cols=10 Identities=0% Similarity=0.185 Sum_probs=7.7
Q ss_pred eEEEEEccHH
Q 020632 110 FAFAVFSDQQ 119 (323)
Q Consensus 110 ~aFV~f~~~~ 119 (323)
-|+|-|.+..
T Consensus 125 ~GlIAY~~~~ 134 (465)
T PF01690_consen 125 DGLIAYDNSS 134 (465)
T ss_pred eeeEEecCcc
Confidence 5888888765
No 276
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=21.30 E-value=2e+02 Score=23.56 Aligned_cols=49 Identities=4% Similarity=-0.034 Sum_probs=32.1
Q ss_pred CCCHHHHHHHhhcCCCeEE------------EEEecCCCCCeEEEEecCchhhH-----HHhhCCc
Q 020632 242 TCTEQELTQVFSKCPGFLK------------LKIQSTYGPPVAFVDFQVTCVCV-----CHILFSL 290 (323)
Q Consensus 242 ~~te~~L~~~F~~fG~i~~------------v~i~~~~~~g~aFV~F~~~~~A~-----~~~lnG~ 290 (323)
..+-+.|+.++.+||.|-- ++++++-.+.-.-|+|-|++..- ++.||..
T Consensus 95 ~~t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg~~i~~~DP~~gP~~~m~l~~fn~~ 160 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDGDSIHVHDPEQGPNLRMSLDMFNQA 160 (166)
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCCCeEEecCcccCCCceecHHHHhhh
Confidence 7899999999999998743 33333322233567777776655 5555543
No 277
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=20.30 E-value=2.3e+02 Score=21.63 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCchHHHHHHhhcCCC----ceEEEeccCCCCCCceEEEEEccHHHHHH-HHHHh
Q 020632 78 EDVKPREIYNLFREFPG----YESSHLRSSTQNSQPFAFAVFSDQQSALG-AMYAL 128 (323)
Q Consensus 78 ~~~~e~~L~~~F~~~G~----v~~~~~~~~~~~~~g~aFV~f~~~~~A~~-A~~~l 128 (323)
..++++.|++-|++.|. +..+.+....+ .||-........+ |++.|
T Consensus 64 ~p~~~e~i~~ql~KlG~T~F~~~~i~i~~~~~-----lFlP~s~LN~lRRea~e~L 114 (122)
T PF12392_consen 64 RPLDEERIRKQLSKLGNTPFELENIEIDLDEG-----LFLPISELNELRREAVEKL 114 (122)
T ss_pred CccCHHHHHHHHHhhCCCcEEEEEEEEEcCCC-----EEEEHHHHHHHHHHHHHHH
Confidence 34789999999999998 55666665455 8998888777655 44444
Done!