Query 020632
Match_columns 323
No_of_seqs 297 out of 1938
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 05:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.1E-34 7.1E-39 248.2 16.0 157 68-308 15-181 (213)
2 3pgw_A U1-A; protein-RNA compl 100.0 3.6E-32 1.2E-36 243.8 26.4 237 67-307 8-282 (282)
3 3md3_A Nuclear and cytoplasmic 100.0 1.4E-32 4.7E-37 226.4 17.1 154 69-306 1-165 (166)
4 1l3k_A Heterogeneous nuclear r 100.0 2.4E-32 8.1E-37 231.5 17.3 166 66-311 11-186 (196)
5 3nmr_A Cugbp ELAV-like family 100.0 5.2E-32 1.8E-36 225.0 18.3 158 67-306 2-175 (175)
6 2adc_A Polypyrimidine tract-bi 100.0 1.7E-31 5.8E-36 232.5 22.3 186 69-308 35-228 (229)
7 3tyt_A Heterogeneous nuclear r 100.0 1E-31 3.5E-36 229.8 18.4 189 68-305 4-204 (205)
8 1b7f_A Protein (SXL-lethal pro 100.0 9.9E-32 3.4E-36 222.0 17.6 154 68-305 3-168 (168)
9 2qfj_A FBP-interacting repress 100.0 1.5E-31 5.1E-36 230.0 18.4 169 68-311 28-208 (216)
10 1qm9_A Polypyrimidine tract-bi 100.0 3.9E-31 1.3E-35 224.7 20.4 187 68-308 3-197 (198)
11 1fxl_A Paraneoplastic encephal 100.0 1.8E-31 6E-36 220.0 17.5 153 69-305 3-167 (167)
12 2cjk_A Nuclear polyadenylated 100.0 4.1E-32 1.4E-36 224.2 11.7 156 67-308 2-166 (167)
13 1fje_B Nucleolin RBD12, protei 100.0 8.8E-32 3E-36 224.1 12.6 157 66-308 11-174 (175)
14 2yh0_A Splicing factor U2AF 65 100.0 1.8E-30 6.3E-35 220.2 19.5 172 67-309 3-195 (198)
15 2g4b_A Splicing factor U2AF 65 100.0 4.5E-30 1.5E-34 212.9 17.6 148 67-305 3-171 (172)
16 3smz_A Protein raver-1, ribonu 100.0 1.3E-29 4.5E-34 227.3 16.7 161 69-312 96-268 (284)
17 3sde_A Paraspeckle component 1 100.0 3.9E-29 1.3E-33 221.7 19.1 150 66-308 20-179 (261)
18 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-29 6.2E-34 227.2 16.9 161 68-308 117-291 (292)
19 2ghp_A U4/U6 snRNA-associated 100.0 6.3E-29 2.2E-33 223.7 15.8 151 66-310 39-199 (292)
20 3smz_A Protein raver-1, ribonu 100.0 2.7E-28 9.2E-33 218.7 18.9 146 68-310 22-177 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.6E-22 5.6E-27 165.4 13.4 76 231-309 70-151 (158)
22 2i2y_A Fusion protein consists 99.9 4.4E-22 1.5E-26 161.6 12.7 137 100-308 5-148 (150)
23 4f25_A Polyadenylate-binding p 99.9 1.4E-22 4.6E-27 157.1 8.4 74 69-142 6-83 (115)
24 3r27_A HnRNP L, heterogeneous 99.8 1.9E-19 6.5E-24 134.6 9.1 75 229-308 19-97 (100)
25 4fxv_A ELAV-like protein 1; RN 99.8 2E-19 6.7E-24 135.4 8.6 74 231-307 19-98 (99)
26 1sjq_A Polypyrimidine tract-bi 99.8 1.9E-19 6.6E-24 135.9 8.1 77 230-311 15-95 (105)
27 2cq1_A PTB-like protein L; RRM 99.8 1.1E-18 3.9E-23 131.4 11.9 79 228-311 12-94 (101)
28 4fxv_A ELAV-like protein 1; RN 99.8 4.6E-19 1.6E-23 133.4 9.3 75 67-141 18-98 (99)
29 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.9E-23 132.2 11.2 80 228-312 12-95 (104)
30 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.7E-18 5.8E-23 131.1 11.7 85 227-314 11-99 (103)
31 3s8s_A Histone-lysine N-methyl 99.8 6.7E-19 2.3E-23 135.0 8.7 77 230-309 5-87 (110)
32 1sjr_A Polypyrimidine tract-bi 99.8 1.2E-18 4.1E-23 141.5 10.5 91 231-322 46-139 (164)
33 2dnh_A Bruno-like 5, RNA bindi 99.8 4.3E-18 1.5E-22 129.3 12.1 83 229-311 13-100 (105)
34 1x4d_A Matrin 3; structural ge 99.8 1.1E-18 3.7E-23 131.5 8.5 74 230-308 14-92 (102)
35 2cq3_A RNA-binding protein 9; 99.8 6.4E-18 2.2E-22 127.9 12.7 82 228-312 12-97 (103)
36 1why_A Hypothetical protein ri 99.8 4.6E-18 1.6E-22 127.3 11.7 78 229-309 15-94 (97)
37 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-18 5.6E-23 134.0 9.4 79 229-312 29-111 (119)
38 2e5h_A Zinc finger CCHC-type a 99.8 3.7E-18 1.3E-22 126.9 11.1 75 229-306 14-94 (94)
39 2d9p_A Polyadenylate-binding p 99.8 3.5E-18 1.2E-22 129.4 10.9 81 229-312 13-97 (103)
40 4f25_A Polyadenylate-binding p 99.8 1.3E-18 4.5E-23 134.6 8.7 76 231-309 5-84 (115)
41 2lxi_A RNA-binding protein 10; 99.8 3.2E-19 1.1E-23 132.1 4.8 76 231-309 1-84 (91)
42 1x4a_A Splicing factor, argini 99.8 6.3E-18 2.2E-22 129.3 12.1 80 229-311 20-102 (109)
43 2lxi_A RNA-binding protein 10; 99.8 1.3E-18 4.4E-23 128.8 7.9 75 69-143 2-84 (91)
44 2dnm_A SRP46 splicing factor; 99.8 5E-18 1.7E-22 128.5 11.2 81 228-311 10-96 (103)
45 2cqi_A Nucleolysin TIAR; RNA r 99.8 1E-17 3.5E-22 126.8 12.7 79 66-144 13-95 (103)
46 2hvz_A Splicing factor, argini 99.8 3.2E-18 1.1E-22 129.1 9.8 72 69-143 1-76 (101)
47 2lkz_A RNA-binding protein 5; 99.8 9.1E-19 3.1E-23 130.5 6.7 74 231-307 9-94 (95)
48 2do4_A Squamous cell carcinoma 99.8 5.3E-18 1.8E-22 127.6 10.8 79 228-309 14-97 (100)
49 2err_A Ataxin-2-binding protei 99.8 3.6E-18 1.2E-22 130.8 10.0 76 67-142 28-107 (109)
50 2lkz_A RNA-binding protein 5; 99.8 2.3E-18 7.8E-23 128.3 8.6 76 66-141 7-94 (95)
51 3r27_A HnRNP L, heterogeneous 99.8 4.5E-18 1.5E-22 127.1 10.1 72 68-143 21-98 (100)
52 2dgo_A Cytotoxic granule-assoc 99.8 5.7E-18 1.9E-22 130.8 11.1 84 228-314 12-101 (115)
53 2wbr_A GW182, gawky, LD47780P; 99.8 1.7E-18 5.9E-23 125.0 7.5 71 231-306 7-79 (89)
54 1x5u_A Splicing factor 3B subu 99.8 6.5E-18 2.2E-22 128.3 11.1 81 228-311 12-98 (105)
55 2cph_A RNA binding motif prote 99.8 8.5E-18 2.9E-22 128.1 11.8 81 227-310 11-99 (107)
56 3zzy_A Polypyrimidine tract-bi 99.8 4E-18 1.4E-22 133.5 9.9 89 232-322 29-121 (130)
57 3lqv_A PRE-mRNA branch site pr 99.8 2.1E-18 7.1E-23 133.3 8.3 73 68-141 8-84 (115)
58 2e5j_A Methenyltetrahydrofolat 99.7 5.2E-18 1.8E-22 127.0 10.2 75 230-308 18-94 (97)
59 2dnq_A RNA-binding protein 4B; 99.7 7.2E-18 2.5E-22 124.4 10.5 75 230-311 7-83 (90)
60 3s8s_A Histone-lysine N-methyl 99.7 4.6E-18 1.6E-22 130.3 9.7 75 69-143 7-87 (110)
61 1x4h_A RNA-binding protein 28; 99.7 8.8E-18 3E-22 128.8 11.3 82 227-311 11-104 (111)
62 2cpj_A Non-POU domain-containi 99.7 8.6E-18 2.9E-22 126.3 11.0 77 228-309 12-90 (99)
63 2dgs_A DAZ-associated protein 99.7 1.3E-17 4.5E-22 125.2 11.8 79 229-311 8-92 (99)
64 1sjq_A Polypyrimidine tract-bi 99.7 3.4E-18 1.1E-22 129.0 8.5 74 67-144 15-94 (105)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.6E-18 1.2E-22 124.5 8.2 74 230-306 6-85 (85)
66 2a3j_A U1 small nuclear ribonu 99.7 5.3E-18 1.8E-22 133.2 9.7 79 228-309 26-111 (127)
67 1whw_A Hypothetical protein ri 99.7 7.6E-18 2.6E-22 126.5 10.2 78 230-310 7-90 (99)
68 2khc_A Testis-specific RNP-typ 99.7 1.5E-17 5.2E-22 129.0 12.2 77 227-306 36-118 (118)
69 2dnz_A Probable RNA-binding pr 99.7 9.7E-18 3.3E-22 124.9 10.6 79 230-311 4-88 (95)
70 2jvr_A Nucleolar protein 3; RN 99.7 2.1E-18 7.1E-23 132.2 7.1 77 231-310 28-107 (111)
71 2cq3_A RNA-binding protein 9; 99.7 3E-17 1E-21 124.2 13.4 79 66-144 13-95 (103)
72 1x4d_A Matrin 3; structural ge 99.7 7.1E-18 2.4E-22 127.0 9.9 75 67-145 14-95 (102)
73 2x1f_A MRNA 3'-END-processing 99.7 6.2E-18 2.1E-22 126.3 9.5 78 230-310 1-84 (96)
74 2cqc_A Arginine/serine-rich sp 99.7 6.1E-18 2.1E-22 126.0 9.4 76 229-307 13-94 (95)
75 2ytc_A PRE-mRNA-splicing facto 99.7 8.2E-18 2.8E-22 122.6 9.9 74 228-306 9-85 (85)
76 2cq0_A Eukaryotic translation 99.7 7.3E-18 2.5E-22 127.6 9.9 81 228-311 12-98 (103)
77 2cpz_A CUG triplet repeat RNA- 99.7 6.6E-18 2.2E-22 130.5 9.6 81 228-311 22-108 (115)
78 2jvo_A Nucleolar protein 3; nu 99.7 5.4E-18 1.9E-22 129.5 8.9 77 228-311 28-106 (108)
79 2dgp_A Bruno-like 4, RNA bindi 99.7 8.1E-18 2.8E-22 128.0 9.8 84 228-311 10-99 (106)
80 2cph_A RNA binding motif prote 99.7 3E-17 1E-21 125.0 13.0 79 66-144 13-99 (107)
81 2cpf_A RNA binding motif prote 99.7 4.5E-18 1.5E-22 127.5 8.2 80 230-312 4-92 (98)
82 1x4c_A Splicing factor, argini 99.7 1.9E-17 6.5E-22 126.5 11.7 80 230-312 14-97 (108)
83 1whw_A Hypothetical protein ri 99.7 3.4E-17 1.2E-21 122.9 12.7 79 66-144 6-90 (99)
84 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.6E-18 1.6E-22 124.5 7.7 76 230-308 5-86 (87)
85 1x4f_A Matrin 3; structural ge 99.7 7.5E-18 2.6E-22 128.8 9.0 76 228-308 22-102 (112)
86 1x5s_A Cold-inducible RNA-bind 99.7 1E-17 3.5E-22 126.5 9.6 80 230-312 11-96 (102)
87 1u6f_A Tcubp1, RNA-binding pro 99.7 4.4E-17 1.5E-21 130.2 13.8 80 65-144 39-124 (139)
88 1wex_A Hypothetical protein (r 99.7 3.8E-17 1.3E-21 123.8 12.7 73 68-144 15-93 (104)
89 2d9p_A Polyadenylate-binding p 99.7 2E-17 7E-22 125.1 11.2 79 66-144 13-95 (103)
90 2lea_A Serine/arginine-rich sp 99.7 2.5E-18 8.7E-23 136.7 6.4 77 231-310 47-129 (135)
91 2ywk_A Putative RNA-binding pr 99.7 7.6E-18 2.6E-22 125.5 8.6 77 228-307 13-94 (95)
92 2dgu_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 126.4 9.9 77 230-313 10-88 (103)
93 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-17 3.8E-22 125.0 9.5 76 231-309 9-91 (96)
94 1s79_A Lupus LA protein; RRM, 99.7 5.8E-18 2E-22 128.2 8.0 81 230-313 10-94 (103)
95 1x4g_A Nucleolysin TIAR; struc 99.7 1E-17 3.4E-22 128.2 9.4 79 230-313 24-104 (109)
96 2dgt_A RNA-binding protein 30; 99.7 1.6E-17 5.5E-22 123.0 10.2 75 230-311 9-85 (92)
97 4a8x_A RNA-binding protein wit 99.7 9E-18 3.1E-22 123.1 8.8 75 231-308 4-85 (88)
98 2fy1_A RNA-binding motif prote 99.7 1.6E-17 5.3E-22 128.7 10.6 78 230-310 6-88 (116)
99 2fc9_A NCL protein; structure 99.7 9.2E-18 3.2E-22 126.6 9.0 81 228-311 12-94 (101)
100 1x5u_A Splicing factor 3B subu 99.7 4.1E-17 1.4E-21 123.8 12.6 78 67-144 14-97 (105)
101 2e5h_A Zinc finger CCHC-type a 99.7 3.8E-17 1.3E-21 121.4 12.1 73 68-140 16-94 (94)
102 2err_A Ataxin-2-binding protei 99.7 1.2E-17 3.9E-22 127.9 9.5 78 228-308 26-107 (109)
103 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.7E-22 126.4 9.1 79 230-311 11-95 (102)
104 1wi8_A EIF-4B, eukaryotic tran 99.7 2.2E-17 7.4E-22 125.2 10.8 78 229-311 13-97 (104)
105 2cq1_A PTB-like protein L; RRM 99.7 2.7E-17 9.4E-22 123.8 11.2 72 68-143 15-92 (101)
106 2la4_A Nuclear and cytoplasmic 99.7 6.3E-18 2.2E-22 127.5 7.5 74 230-308 26-101 (101)
107 2dnz_A Probable RNA-binding pr 99.7 4.7E-17 1.6E-21 121.2 12.2 77 68-144 5-87 (95)
108 3md1_A Nuclear and cytoplasmic 99.7 1.3E-17 4.3E-22 121.0 8.8 74 232-308 2-81 (83)
109 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-17 3.6E-22 123.9 8.6 78 230-310 7-88 (92)
110 2cpd_A Apobec-1 stimulating pr 99.7 3.4E-17 1.2E-21 123.0 11.5 76 229-311 13-92 (99)
111 2dgv_A HnRNP M, heterogeneous 99.7 1.6E-17 5.4E-22 123.0 9.4 77 67-143 7-87 (92)
112 1x5t_A Splicing factor 3B subu 99.7 9.4E-18 3.2E-22 125.2 8.3 80 230-312 4-90 (96)
113 2dnp_A RNA-binding protein 14; 99.7 1.6E-17 5.6E-22 122.5 9.5 74 230-310 8-83 (90)
114 1x4a_A Splicing factor, argini 99.7 5.2E-17 1.8E-21 124.2 12.6 77 67-144 21-101 (109)
115 2cqd_A RNA-binding region cont 99.7 3.3E-17 1.1E-21 126.8 11.6 83 226-312 12-100 (116)
116 2dgs_A DAZ-associated protein 99.7 5.5E-17 1.9E-21 121.8 12.5 77 67-144 9-91 (99)
117 2la6_A RNA-binding protein FUS 99.7 1.9E-17 6.6E-22 124.3 9.9 75 229-306 11-99 (99)
118 2do4_A Squamous cell carcinoma 99.7 4.1E-17 1.4E-21 122.7 11.8 77 67-143 16-97 (100)
119 2khc_A Testis-specific RNP-typ 99.7 6.3E-17 2.1E-21 125.5 13.2 75 66-140 38-118 (118)
120 2dng_A Eukaryotic translation 99.7 2.9E-17 9.9E-22 124.3 10.9 78 229-311 13-96 (103)
121 2cpe_A RNA-binding protein EWS 99.7 1.8E-17 6.1E-22 127.6 9.8 82 227-311 11-106 (113)
122 2jrs_A RNA-binding protein 39; 99.7 2.1E-17 7E-22 126.3 10.0 78 228-308 23-106 (108)
123 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.4E-17 4.7E-22 121.9 8.7 75 68-142 6-86 (87)
124 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-17 4.9E-22 127.5 9.1 79 229-310 24-108 (110)
125 2kvi_A Nuclear polyadenylated 99.7 1.1E-17 3.6E-22 125.1 8.1 78 229-313 8-88 (96)
126 1x5s_A Cold-inducible RNA-bind 99.7 3.4E-17 1.2E-21 123.6 10.9 78 67-144 11-94 (102)
127 2rs2_A Musashi-1, RNA-binding 99.7 2.7E-17 9.1E-22 125.9 10.4 78 66-143 23-105 (109)
128 2xnq_A Nuclear polyadenylated 99.7 2E-17 6.9E-22 123.8 9.5 74 229-309 20-96 (97)
129 1p27_B RNA-binding protein 8A; 99.7 1.6E-17 5.5E-22 126.3 9.1 77 229-308 21-103 (106)
130 2do0_A HnRNP M, heterogeneous 99.7 4.4E-17 1.5E-21 125.6 11.7 77 229-308 13-94 (114)
131 2ad9_A Polypyrimidine tract-bi 99.7 2.8E-17 9.5E-22 127.0 10.4 73 68-144 31-109 (119)
132 2cpx_A Hypothetical protein FL 99.7 2.4E-17 8.3E-22 127.2 10.1 80 229-311 23-108 (115)
133 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.9E-17 6.6E-22 120.6 9.0 74 67-140 6-85 (85)
134 3d2w_A TAR DNA-binding protein 99.7 1.8E-17 6.2E-22 122.1 8.8 75 230-308 10-84 (89)
135 2cqd_A RNA-binding region cont 99.7 7.9E-17 2.7E-21 124.6 12.7 80 65-144 14-98 (116)
136 2fy1_A RNA-binding motif prote 99.7 9E-17 3.1E-21 124.3 13.0 79 66-144 5-88 (116)
137 2dnm_A SRP46 splicing factor; 99.7 4.9E-17 1.7E-21 123.0 11.3 77 67-143 12-94 (103)
138 2la6_A RNA-binding protein FUS 99.7 3.9E-17 1.3E-21 122.7 10.6 72 69-140 14-99 (99)
139 2dgo_A Cytotoxic granule-assoc 99.7 5.6E-17 1.9E-21 125.2 11.8 79 66-144 13-97 (115)
140 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-17 3.9E-22 137.6 8.4 80 230-312 71-156 (165)
141 1x4f_A Matrin 3; structural ge 99.7 3.7E-17 1.3E-21 125.0 10.5 73 68-144 25-104 (112)
142 2cpi_A CCR4-NOT transcription 99.7 1.5E-17 5.1E-22 127.7 8.4 77 230-309 14-102 (111)
143 2hvz_A Splicing factor, argini 99.7 1.1E-17 3.7E-22 126.2 7.4 76 232-311 1-78 (101)
144 2cq4_A RNA binding motif prote 99.7 1.5E-17 5E-22 128.3 8.4 77 230-310 24-106 (114)
145 2cq0_A Eukaryotic translation 99.7 3.6E-17 1.2E-21 123.7 10.4 80 65-144 12-97 (103)
146 1x5t_A Splicing factor 3B subu 99.7 4E-17 1.4E-21 121.8 10.4 77 68-144 5-88 (96)
147 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.6E-17 1.9E-21 122.4 11.3 78 67-144 11-94 (102)
148 2kxn_B Transformer-2 protein h 99.7 2.4E-17 8.1E-22 130.1 9.6 78 228-308 43-126 (129)
149 2e5i_A Heterogeneous nuclear r 99.7 1.2E-16 4.2E-21 124.4 13.3 90 230-322 22-117 (124)
150 1u6f_A Tcubp1, RNA-binding pro 99.7 8.7E-17 3E-21 128.4 12.9 81 228-311 39-125 (139)
151 2dnh_A Bruno-like 5, RNA bindi 99.7 8.2E-17 2.8E-21 122.2 12.1 78 67-144 14-99 (105)
152 3n9u_C Cleavage and polyadenyl 99.7 1.7E-17 5.9E-22 135.1 8.9 76 67-142 54-137 (156)
153 1wf1_A RNA-binding protein RAL 99.7 4.3E-17 1.5E-21 124.9 10.6 75 230-311 26-103 (110)
154 2cqc_A Arginine/serine-rich sp 99.7 4.3E-17 1.5E-21 121.3 10.2 75 67-141 14-94 (95)
155 2x1f_A MRNA 3'-END-processing 99.7 5E-17 1.7E-21 121.4 10.5 76 69-144 3-84 (96)
156 2dgx_A KIAA0430 protein; RRM d 99.7 4.9E-17 1.7E-21 121.5 10.4 75 67-142 8-90 (96)
157 3ex7_B RNA-binding protein 8A; 99.7 2.6E-17 8.8E-22 129.2 9.3 80 229-311 20-105 (126)
158 2cpf_A RNA binding motif prote 99.7 2.5E-17 8.5E-22 123.4 8.8 78 67-144 4-90 (98)
159 2cpz_A CUG triplet repeat RNA- 99.7 5E-17 1.7E-21 125.5 10.7 78 67-144 24-107 (115)
160 2dgp_A Bruno-like 4, RNA bindi 99.7 8.8E-17 3E-21 122.2 11.9 78 67-144 12-98 (106)
161 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.9E-17 6.4E-22 124.7 7.8 72 69-142 20-98 (100)
162 1whx_A Hypothetical protein ri 99.7 2.2E-17 7.5E-22 126.8 8.3 75 231-310 10-86 (111)
163 2xnq_A Nuclear polyadenylated 99.7 5.6E-17 1.9E-21 121.4 10.3 69 69-143 23-96 (97)
164 2wbr_A GW182, gawky, LD47780P; 99.7 2.7E-17 9.4E-22 118.7 8.2 68 69-140 8-79 (89)
165 2dhg_A TRNA selenocysteine ass 99.7 1.6E-17 5.6E-22 125.8 7.4 82 230-314 8-96 (104)
166 1nu4_A U1A RNA binding domain; 99.7 1.5E-17 5.1E-22 124.4 7.0 79 228-309 5-90 (97)
167 2div_A TRNA selenocysteine ass 99.7 2.6E-17 8.8E-22 123.6 8.3 76 230-308 8-94 (99)
168 2a3j_A U1 small nuclear ribonu 99.7 5.5E-17 1.9E-21 127.3 10.5 76 68-144 29-112 (127)
169 3md1_A Nuclear and cytoplasmic 99.7 4.8E-17 1.6E-21 117.9 9.3 74 69-142 2-81 (83)
170 2m2b_A RNA-binding protein 10; 99.7 1.7E-17 5.7E-22 131.3 7.5 78 227-308 19-108 (131)
171 2diu_A KIAA0430 protein; struc 99.7 4.1E-17 1.4E-21 119.0 8.7 71 229-308 6-84 (96)
172 3lqv_A PRE-mRNA branch site pr 99.7 5.6E-17 1.9E-21 125.2 10.1 78 230-310 7-87 (115)
173 3ulh_A THO complex subunit 4; 99.7 3.5E-17 1.2E-21 124.7 8.7 76 229-307 27-107 (107)
174 2dnq_A RNA-binding protein 4B; 99.7 1.2E-16 4E-21 117.9 11.1 72 67-144 7-82 (90)
175 2nlw_A Eukaryotic translation 99.7 7.7E-17 2.6E-21 122.4 10.4 75 68-142 15-100 (105)
176 3s7r_A Heterogeneous nuclear r 99.7 5.1E-17 1.8E-21 118.9 9.0 74 66-139 9-87 (87)
177 2ywk_A Putative RNA-binding pr 99.7 4.2E-17 1.4E-21 121.4 8.6 76 66-141 14-94 (95)
178 2la4_A Nuclear and cytoplasmic 99.7 9.2E-18 3.2E-22 126.6 5.1 70 68-141 27-100 (101)
179 1x4h_A RNA-binding protein 28; 99.7 2.2E-16 7.5E-21 121.0 12.9 78 67-144 14-103 (111)
180 2cqh_A IGF-II mRNA-binding pro 99.7 2E-17 6.9E-22 122.7 6.8 76 230-311 7-86 (93)
181 1p1t_A Cleavage stimulation fa 99.7 8.3E-18 2.8E-22 127.4 4.7 79 230-311 7-91 (104)
182 3p5t_L Cleavage and polyadenyl 99.7 6.8E-18 2.3E-22 124.6 4.1 75 232-309 2-84 (90)
183 1p27_B RNA-binding protein 8A; 99.7 6.4E-17 2.2E-21 123.0 9.7 76 67-142 22-103 (106)
184 2nlw_A Eukaryotic translation 99.7 5.9E-17 2E-21 123.1 9.4 76 230-308 14-100 (105)
185 2jrs_A RNA-binding protein 39; 99.7 7.4E-17 2.5E-21 123.2 10.0 76 68-143 26-107 (108)
186 1s79_A Lupus LA protein; RRM, 99.7 5.5E-17 1.9E-21 122.7 9.2 76 66-142 9-89 (103)
187 2rs2_A Musashi-1, RNA-binding 99.7 6.4E-17 2.2E-21 123.8 9.6 80 228-311 22-107 (109)
188 2jvo_A Nucleolar protein 3; nu 99.7 5.5E-17 1.9E-21 123.9 9.1 70 68-143 31-104 (108)
189 1x5o_A RNA binding motif, sing 99.7 1.4E-16 4.7E-21 122.8 11.4 82 228-309 22-113 (114)
190 1wi8_A EIF-4B, eukaryotic tran 99.7 1.5E-16 5E-21 120.6 11.4 75 68-144 15-96 (104)
191 2dh8_A DAZ-associated protein 99.7 3.6E-17 1.2E-21 124.2 8.1 81 227-311 12-98 (105)
192 3ucg_A Polyadenylate-binding p 99.7 6.8E-17 2.3E-21 118.7 9.3 74 231-308 6-85 (89)
193 2cpe_A RNA-binding protein EWS 99.7 1.5E-16 5.2E-21 122.3 11.4 79 66-144 13-105 (113)
194 3ns6_A Eukaryotic translation 99.7 1.5E-17 5.2E-22 125.2 5.6 76 231-308 6-93 (100)
195 1oo0_B CG8781-PA, drosophila Y 99.7 1.1E-16 3.6E-21 122.6 10.4 78 66-143 24-107 (110)
196 2e44_A Insulin-like growth fac 99.7 8.5E-17 2.9E-21 120.0 9.5 76 230-308 14-92 (96)
197 3p5t_L Cleavage and polyadenyl 99.7 1.7E-17 5.7E-22 122.5 5.5 74 69-142 2-83 (90)
198 3ns6_A Eukaryotic translation 99.7 3.5E-17 1.2E-21 123.2 7.2 77 66-142 4-93 (100)
199 2cq2_A Hypothetical protein LO 99.7 4.1E-17 1.4E-21 124.9 7.6 77 230-309 24-107 (114)
200 2kxn_B Transformer-2 protein h 99.7 9.2E-17 3.2E-21 126.6 9.8 76 67-142 45-126 (129)
201 3s7r_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 117.2 9.5 74 229-305 9-87 (87)
202 2cpj_A Non-POU domain-containi 99.7 1.6E-16 5.6E-21 119.2 10.7 72 68-143 15-90 (99)
203 2cqp_A RNA-binding protein 12; 99.7 3E-17 1E-21 123.0 6.6 76 230-308 14-95 (98)
204 1x5p_A Negative elongation fac 99.7 2.6E-16 8.7E-21 117.7 11.7 75 230-311 14-90 (97)
205 2dis_A Unnamed protein product 99.7 7.7E-17 2.6E-21 123.2 8.9 78 230-310 7-94 (109)
206 1why_A Hypothetical protein ri 99.7 3.7E-16 1.3E-20 116.8 12.3 70 69-142 18-93 (97)
207 2div_A TRNA selenocysteine ass 99.7 8E-17 2.7E-21 120.9 8.7 76 67-142 8-94 (99)
208 1fjc_A Nucleolin RBD2, protein 99.7 2.5E-17 8.5E-22 123.0 5.8 78 229-310 14-93 (96)
209 1x4e_A RNA binding motif, sing 99.7 1.6E-17 5.6E-22 121.1 4.7 75 230-307 4-84 (85)
210 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.6E-17 8.8E-22 124.0 5.9 74 230-308 18-98 (100)
211 2e5j_A Methenyltetrahydrofolat 99.7 2E-16 6.8E-21 118.3 10.6 73 67-142 18-94 (97)
212 2cqg_A TDP-43, TAR DNA-binding 99.7 2E-16 7E-21 119.6 10.7 79 228-311 12-96 (103)
213 2cq4_A RNA binding motif prote 99.7 1.3E-16 4.5E-21 122.9 9.8 77 66-143 23-105 (114)
214 2cpi_A CCR4-NOT transcription 99.7 9.4E-17 3.2E-21 123.2 8.9 77 67-143 14-102 (111)
215 3ex7_B RNA-binding protein 8A; 99.7 2E-16 6.8E-21 124.1 10.9 78 67-144 21-104 (126)
216 3ucg_A Polyadenylate-binding p 99.7 1.3E-16 4.3E-21 117.3 9.0 75 67-142 5-85 (89)
217 2fc8_A NCL protein; structure 99.7 1E-16 3.4E-21 121.0 8.7 80 229-311 13-95 (102)
218 3pgw_S U1-70K; protein-RNA com 99.7 1.9E-17 6.7E-22 156.3 5.7 76 230-308 101-182 (437)
219 2kt5_A RNA and export factor-b 99.7 1.6E-16 5.5E-21 124.3 10.0 77 230-309 34-115 (124)
220 2ytc_A PRE-mRNA-splicing facto 99.7 1.6E-16 5.5E-21 115.7 9.3 70 67-140 11-85 (85)
221 1x4b_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 123.9 8.8 79 230-311 26-109 (116)
222 2do0_A HnRNP M, heterogeneous 99.7 3.4E-16 1.2E-20 120.5 11.6 76 67-142 14-94 (114)
223 2cqg_A TDP-43, TAR DNA-binding 99.7 2.3E-16 8E-21 119.2 10.5 78 67-144 14-95 (103)
224 2kt5_A RNA and export factor-b 99.7 5.2E-16 1.8E-20 121.5 12.7 77 66-142 33-114 (124)
225 3ulh_A THO complex subunit 4; 99.7 1.7E-16 5.8E-21 120.8 9.6 74 67-140 28-106 (107)
226 2dh8_A DAZ-associated protein 99.7 1.2E-16 4.2E-21 121.2 8.7 79 65-144 13-97 (105)
227 2jwn_A Embryonic polyadenylate 99.7 8.8E-17 3E-21 125.8 8.1 78 230-311 35-118 (124)
228 2fc9_A NCL protein; structure 99.7 3E-16 1E-20 118.2 10.7 76 66-143 13-92 (101)
229 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.6E-17 2.6E-21 115.1 7.0 71 69-139 1-76 (77)
230 2dgt_A RNA-binding protein 30; 99.7 5.2E-16 1.8E-20 114.8 11.7 72 67-144 9-84 (92)
231 3n9u_C Cleavage and polyadenyl 99.7 7.2E-17 2.5E-21 131.4 7.6 76 230-308 54-137 (156)
232 2krb_A Eukaryotic translation 99.7 7.4E-17 2.5E-21 116.5 6.8 68 69-136 2-80 (81)
233 3tyt_A Heterogeneous nuclear r 99.7 1.4E-16 4.9E-21 135.7 9.7 75 230-308 3-80 (205)
234 2dng_A Eukaryotic translation 99.7 3.6E-16 1.2E-20 118.2 10.8 75 68-144 15-95 (103)
235 2jvr_A Nucleolar protein 3; RN 99.7 2.1E-16 7E-21 121.0 9.5 72 69-142 29-105 (111)
236 4a8x_A RNA-binding protein wit 99.7 2.2E-16 7.6E-21 115.6 9.3 75 68-142 4-85 (88)
237 1whx_A Hypothetical protein ri 99.7 1.7E-16 5.9E-21 121.8 9.0 74 67-144 9-86 (111)
238 1x4g_A Nucleolysin TIAR; struc 99.7 3E-16 1E-20 120.0 10.2 73 68-144 25-101 (109)
239 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-16 7.4E-21 128.7 9.8 79 229-310 37-121 (156)
240 2kvi_A Nuclear polyadenylated 99.7 2.3E-16 8E-21 117.7 9.0 72 67-144 9-85 (96)
241 1x4c_A Splicing factor, argini 99.7 4.3E-16 1.5E-20 118.9 10.6 72 68-144 15-95 (108)
242 1x4e_A RNA binding motif, sing 99.7 6.2E-17 2.1E-21 118.0 5.7 72 68-139 5-82 (85)
243 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.3E-16 2.5E-20 123.0 12.3 73 67-139 62-140 (140)
244 2dgu_A Heterogeneous nuclear r 99.7 5.5E-16 1.9E-20 117.2 11.0 71 68-144 11-85 (103)
245 1wg1_A KIAA1579 protein, homol 99.7 1E-16 3.4E-21 117.8 6.7 72 231-308 5-78 (88)
246 2cpd_A Apobec-1 stimulating pr 99.7 1.1E-15 3.6E-20 114.7 12.5 72 67-144 14-91 (99)
247 2ek1_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 121.6 4.5 75 230-307 14-94 (95)
248 1p1t_A Cleavage stimulation fa 99.7 1.5E-16 5.1E-21 120.5 7.8 78 67-144 7-90 (104)
249 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-16 9E-21 125.6 9.6 74 229-305 61-140 (140)
250 2cqp_A RNA-binding protein 12; 99.7 1.8E-16 6.3E-21 118.7 8.0 74 68-141 15-94 (98)
251 2m2b_A RNA-binding protein 10; 99.7 2.8E-16 9.6E-21 124.2 9.4 76 66-142 21-108 (131)
252 2ki2_A SS-DNA binding protein 99.7 3.8E-17 1.3E-21 120.5 4.0 75 232-310 2-82 (90)
253 2dhg_A TRNA selenocysteine ass 99.7 2.7E-16 9.4E-21 119.0 8.9 77 68-144 9-92 (104)
254 1wg5_A Heterogeneous nuclear r 99.7 7.7E-16 2.6E-20 116.7 11.3 76 67-142 14-94 (104)
255 2dgw_A Probable RNA-binding pr 99.7 3.6E-16 1.2E-20 115.4 9.1 74 230-308 9-87 (91)
256 2mss_A Protein (musashi1); RNA 99.7 2E-16 6.9E-21 112.4 7.4 69 70-139 1-75 (75)
257 2dnp_A RNA-binding protein 14; 99.7 5.9E-16 2E-20 114.1 10.1 71 67-143 8-82 (90)
258 1x4b_A Heterogeneous nuclear r 99.7 4.4E-16 1.5E-20 120.4 9.9 77 67-144 26-108 (116)
259 1nu4_A U1A RNA binding domain; 99.7 1.4E-16 4.8E-21 119.0 6.8 76 68-144 8-91 (97)
260 2cpy_A RNA-binding protein 12; 99.7 3.8E-16 1.3E-20 120.4 9.4 77 66-143 13-95 (114)
261 2krb_A Eukaryotic translation 99.7 9.8E-17 3.4E-21 115.9 5.7 69 232-303 2-81 (81)
262 2lea_A Serine/arginine-rich sp 99.7 2.7E-16 9.3E-21 124.9 8.6 77 67-143 46-128 (135)
263 2mss_A Protein (musashi1); RNA 99.6 1.4E-16 4.9E-21 113.1 6.2 70 233-305 1-75 (75)
264 2cpy_A RNA-binding protein 12; 99.6 3E-16 1E-20 121.0 8.4 77 230-309 14-95 (114)
265 1fjc_A Nucleolin RBD2, protein 99.6 3.2E-16 1.1E-20 116.9 8.3 75 66-143 14-92 (96)
266 2fc8_A NCL protein; structure 99.6 5.6E-16 1.9E-20 116.9 9.7 77 67-144 14-94 (102)
267 1fj7_A Nucleolin RBD1, protein 99.6 1.3E-16 4.4E-21 120.2 6.0 74 68-142 17-95 (101)
268 1wg5_A Heterogeneous nuclear r 99.6 6.7E-16 2.3E-20 117.0 9.8 76 230-308 14-94 (104)
269 2kn4_A Immunoglobulin G-bindin 99.6 1.1E-15 3.7E-20 124.7 11.7 76 68-143 70-151 (158)
270 2dgw_A Probable RNA-binding pr 99.6 6.9E-16 2.4E-20 113.9 9.6 74 67-142 9-87 (91)
271 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.5E-16 8.6E-21 112.4 6.8 70 232-305 1-76 (77)
272 1wf0_A TDP-43, TAR DNA-binding 99.6 2.2E-16 7.6E-21 115.8 6.6 77 230-310 4-80 (88)
273 2diu_A KIAA0430 protein; struc 99.6 8.2E-16 2.8E-20 112.1 9.5 69 69-145 9-87 (96)
274 1wf1_A RNA-binding protein RAL 99.6 9.5E-16 3.3E-20 117.3 10.4 69 68-142 27-100 (110)
275 2cpx_A Hypothetical protein FL 99.6 5.6E-16 1.9E-20 119.5 9.2 75 68-144 25-107 (115)
276 3beg_B Splicing factor, argini 99.6 3.8E-16 1.3E-20 120.6 8.1 73 231-309 16-95 (115)
277 2dis_A Unnamed protein product 99.6 6.7E-16 2.3E-20 117.9 9.4 76 68-143 8-93 (109)
278 1sjr_A Polypyrimidine tract-bi 99.6 9E-16 3.1E-20 124.6 10.6 76 67-144 45-126 (164)
279 2ek1_A RNA-binding protein 12; 99.6 1.5E-16 5.3E-21 118.3 5.7 73 69-141 16-94 (95)
280 1h2v_Z 20 kDa nuclear CAP bind 99.6 7.6E-16 2.6E-20 125.4 10.2 78 66-143 37-120 (156)
281 2ki2_A SS-DNA binding protein 99.6 1.3E-16 4.4E-21 117.6 5.0 73 69-142 2-80 (90)
282 2db1_A Heterogeneous nuclear r 99.6 4.9E-16 1.7E-20 120.6 8.5 76 66-142 15-98 (118)
283 2cqh_A IGF-II mRNA-binding pro 99.6 5.3E-16 1.8E-20 115.0 8.1 71 68-143 8-84 (93)
284 1x5p_A Negative elongation fac 99.6 2.9E-15 9.8E-20 112.0 12.2 71 67-143 14-88 (97)
285 2e5g_A U6 snRNA-specific termi 99.6 7.3E-16 2.5E-20 114.5 8.7 74 231-309 8-83 (94)
286 3egn_A RNA-binding protein 40; 99.6 3E-16 1E-20 125.9 7.0 76 230-308 44-130 (143)
287 1fj7_A Nucleolin RBD1, protein 99.6 2.7E-16 9.2E-21 118.4 6.3 76 230-310 16-97 (101)
288 2dnn_A RNA-binding protein 12; 99.6 1.3E-15 4.5E-20 116.2 10.2 74 67-142 15-93 (109)
289 2bz2_A Negative elongation fac 99.6 7.7E-16 2.6E-20 119.9 9.0 74 230-310 38-113 (121)
290 2i2y_A Fusion protein consists 99.6 1.7E-15 5.7E-20 122.6 11.3 73 67-142 72-148 (150)
291 2db1_A Heterogeneous nuclear r 99.6 3.6E-16 1.2E-20 121.3 6.9 76 230-308 16-98 (118)
292 2jwn_A Embryonic polyadenylate 99.6 8.1E-16 2.8E-20 120.3 8.7 75 67-142 35-115 (124)
293 2lcw_A RNA-binding protein FUS 99.4 2.7E-17 9.4E-22 127.2 0.0 80 229-311 5-98 (116)
294 1iqt_A AUF1, heterogeneous nuc 99.6 3E-16 1E-20 111.4 5.4 70 70-139 1-75 (75)
295 1wez_A HnRNP H', FTP-3, hetero 99.6 1.1E-15 3.9E-20 115.3 8.9 72 68-141 15-91 (102)
296 1x5o_A RNA binding motif, sing 99.6 1.3E-15 4.5E-20 117.2 9.4 77 66-142 23-112 (114)
297 2lmi_A GRSF-1, G-rich sequence 99.6 7.7E-16 2.6E-20 117.3 8.0 76 66-142 9-92 (107)
298 2hgl_A HNRPF protein, heteroge 99.6 7.4E-16 2.5E-20 122.3 8.1 74 67-141 43-124 (136)
299 3q2s_C Cleavage and polyadenyl 99.6 4.7E-16 1.6E-20 134.6 7.6 76 230-308 67-150 (229)
300 1wg1_A KIAA1579 protein, homol 99.6 9.6E-16 3.3E-20 112.5 7.9 72 67-143 4-79 (88)
301 1wez_A HnRNP H', FTP-3, hetero 99.6 1.5E-15 5.2E-20 114.6 9.2 76 230-309 14-93 (102)
302 3zzy_A Polypyrimidine tract-bi 99.6 2.1E-15 7.2E-20 118.0 10.0 75 67-144 27-108 (130)
303 1wf0_A TDP-43, TAR DNA-binding 99.6 7.1E-16 2.4E-20 113.1 6.9 75 67-144 4-80 (88)
304 1iqt_A AUF1, heterogeneous nuc 99.6 4.4E-16 1.5E-20 110.6 5.5 70 233-305 1-75 (75)
305 2f3j_A RNA and export factor b 99.6 1.5E-15 5.2E-20 126.2 9.6 78 229-309 86-168 (177)
306 3d2w_A TAR DNA-binding protein 99.6 1.2E-15 4.1E-20 112.2 8.0 71 69-142 12-84 (89)
307 3pgw_A U1-A; protein-RNA compl 99.6 1.1E-14 3.7E-19 129.9 15.6 72 66-140 205-281 (282)
308 2dnl_A Cytoplasmic polyadenyla 99.6 1.7E-15 5.9E-20 116.7 9.0 73 67-140 7-86 (114)
309 1wel_A RNA-binding protein 12; 99.6 1.8E-15 6E-20 118.4 9.1 76 67-143 24-105 (124)
310 1wel_A RNA-binding protein 12; 99.6 5.6E-16 1.9E-20 121.3 6.3 75 230-308 24-104 (124)
311 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2E-15 6.7E-20 124.2 9.2 77 68-144 72-154 (165)
312 2cq2_A Hypothetical protein LO 99.6 1.4E-15 4.7E-20 116.4 7.6 70 68-141 25-105 (114)
313 3egn_A RNA-binding protein 40; 99.6 7.8E-16 2.7E-20 123.5 6.5 74 68-142 45-130 (143)
314 2hgl_A HNRPF protein, heteroge 99.6 6E-16 2.1E-20 122.8 5.8 75 230-308 43-125 (136)
315 2dnn_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 115.7 7.9 74 231-308 16-93 (109)
316 2f3j_A RNA and export factor b 99.6 1.6E-14 5.6E-19 119.9 14.7 78 65-142 85-167 (177)
317 3pgw_S U1-70K; protein-RNA com 99.6 7.5E-15 2.6E-19 138.6 14.2 79 65-143 99-183 (437)
318 2e5g_A U6 snRNA-specific termi 99.6 3.3E-15 1.1E-19 111.0 9.2 72 67-142 7-82 (94)
319 4f02_A Polyadenylate-binding p 99.6 1.7E-15 5.8E-20 129.7 8.1 78 230-310 14-97 (213)
320 2e5i_A Heterogeneous nuclear r 99.6 8.7E-15 3E-19 113.9 11.1 72 69-144 26-104 (124)
321 3q2s_C Cleavage and polyadenyl 99.6 1.5E-15 5.2E-20 131.4 7.5 77 67-143 67-151 (229)
322 2lmi_A GRSF-1, G-rich sequence 99.6 8.7E-16 3E-20 117.0 5.2 76 230-308 10-92 (107)
323 2e44_A Insulin-like growth fac 99.6 5.2E-15 1.8E-19 110.2 9.2 73 68-142 15-92 (96)
324 2xs2_A Deleted in azoospermia- 99.6 1.5E-15 5.3E-20 114.5 6.1 75 230-308 8-86 (102)
325 2hzc_A Splicing factor U2AF 65 99.6 3.1E-15 1E-19 109.3 7.6 69 230-304 5-86 (87)
326 2hgm_A HNRPF protein, heteroge 99.6 3.3E-15 1.1E-19 116.7 8.1 74 67-141 41-120 (126)
327 3u1l_A PRE-mRNA-splicing facto 99.6 2.7E-15 9.4E-20 129.6 8.3 78 229-308 132-229 (240)
328 2lcw_A RNA-binding protein FUS 99.4 1.3E-16 4.6E-21 123.3 0.0 79 66-144 5-97 (116)
329 2dit_A HIV TAT specific factor 99.6 1.2E-14 4.2E-19 111.5 11.0 79 230-311 14-105 (112)
330 2xs2_A Deleted in azoospermia- 99.6 1.5E-15 5E-20 114.6 4.8 76 67-143 8-87 (102)
331 3beg_B Splicing factor, argini 99.6 6.5E-15 2.2E-19 113.6 8.6 69 68-141 16-93 (115)
332 2hzc_A Splicing factor U2AF 65 99.6 6.3E-15 2.2E-19 107.6 8.1 68 66-138 4-86 (87)
333 1b7f_A Protein (SXL-lethal pro 99.6 7.3E-15 2.5E-19 120.3 9.2 76 231-309 3-84 (168)
334 2dnl_A Cytoplasmic polyadenyla 99.6 2.8E-15 9.5E-20 115.5 6.2 82 231-318 8-98 (114)
335 2hgn_A Heterogeneous nuclear r 99.6 2.3E-15 7.9E-20 119.8 5.9 74 67-142 45-123 (139)
336 2dha_A FLJ20171 protein; RRM d 99.6 3.8E-15 1.3E-19 116.1 7.0 75 67-141 22-104 (123)
337 3md3_A Nuclear and cytoplasmic 99.6 6.2E-15 2.1E-19 120.3 8.4 78 232-312 1-83 (166)
338 1fxl_A Paraneoplastic encephal 99.6 9.9E-15 3.4E-19 119.2 9.5 76 231-309 2-83 (167)
339 2adc_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 127.3 8.9 76 229-308 32-110 (229)
340 2hgn_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 120.3 4.7 76 230-309 45-124 (139)
341 2bz2_A Negative elongation fac 99.6 1.5E-14 5.1E-19 112.6 9.7 70 68-143 39-112 (121)
342 2hgm_A HNRPF protein, heteroge 99.6 7.6E-15 2.6E-19 114.7 7.9 74 230-307 41-120 (126)
343 2pe8_A Splicing factor 45; RRM 99.5 2.1E-14 7.3E-19 108.7 8.4 76 230-308 7-94 (105)
344 2voo_A Lupus LA protein; RNA-b 99.5 2E-14 6.7E-19 121.2 8.7 75 68-142 109-187 (193)
345 3nmr_A Cugbp ELAV-like family 99.5 2.5E-14 8.5E-19 117.8 8.8 79 231-309 3-89 (175)
346 2dha_A FLJ20171 protein; RRM d 99.5 6.4E-15 2.2E-19 114.8 4.6 75 231-308 23-105 (123)
347 1qm9_A Polypyrimidine tract-bi 99.5 1.7E-14 5.8E-19 121.7 7.5 74 231-308 3-79 (198)
348 1l3k_A Heterogeneous nuclear r 99.5 2.7E-14 9.3E-19 120.0 8.7 78 229-309 11-93 (196)
349 2qfj_A FBP-interacting repress 99.5 3.3E-14 1.1E-18 121.3 9.1 76 231-309 28-109 (216)
350 2cjk_A Nuclear polyadenylated 99.5 4.3E-14 1.5E-18 115.7 9.3 74 68-142 87-166 (167)
351 1fje_B Nucleolin RBD12, protei 99.5 5.8E-14 2E-18 115.9 9.2 73 67-142 98-174 (175)
352 2voo_A Lupus LA protein; RNA-b 99.5 4.3E-14 1.5E-18 119.1 8.4 79 231-312 109-191 (193)
353 2yh0_A Splicing factor U2AF 65 99.5 1.4E-13 4.9E-18 115.7 11.2 77 67-143 113-195 (198)
354 2g4b_A Splicing factor U2AF 65 99.5 4.4E-14 1.5E-18 116.2 7.8 72 68-139 94-171 (172)
355 3u1l_A PRE-mRNA-splicing facto 99.5 5.1E-14 1.7E-18 121.7 8.3 74 66-143 132-230 (240)
356 2j8a_A Histone-lysine N-methyl 99.5 3.2E-14 1.1E-18 109.6 6.1 76 232-310 3-98 (136)
357 3tht_A Alkylated DNA repair pr 99.5 7.9E-14 2.7E-18 126.7 9.1 77 229-307 16-98 (345)
358 3sde_A Paraspeckle component 1 99.5 2E-13 6.8E-18 120.5 9.8 74 230-308 21-96 (261)
359 2j8a_A Histone-lysine N-methyl 99.4 9.4E-14 3.2E-18 107.0 6.3 74 69-142 3-96 (136)
360 2d9o_A DNAJ (HSP40) homolog, s 99.4 8.2E-13 2.8E-17 98.8 10.6 75 231-311 10-93 (100)
361 2dit_A HIV TAT specific factor 99.4 1.3E-12 4.4E-17 100.1 12.0 75 68-144 15-104 (112)
362 2pe8_A Splicing factor 45; RRM 99.4 5.1E-13 1.7E-17 101.1 9.3 74 68-141 8-93 (105)
363 3v4m_A Splicing factor U2AF 65 99.4 3.3E-13 1.1E-17 102.2 7.5 76 230-308 4-97 (105)
364 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.6E-12 8.9E-17 96.1 11.6 73 68-143 10-91 (100)
365 3tht_A Alkylated DNA repair pr 99.4 1.2E-12 4E-17 119.1 9.7 70 67-140 17-97 (345)
366 3s6e_A RNA-binding protein 39; 99.3 2.5E-12 8.6E-17 98.6 8.4 75 230-307 6-92 (114)
367 3ue2_A Poly(U)-binding-splicin 99.3 2.9E-12 9.9E-17 98.9 7.2 75 230-307 19-108 (118)
368 1jmt_A Splicing factor U2AF 35 99.3 5.3E-13 1.8E-17 100.9 2.5 67 236-305 20-103 (104)
369 3v4m_A Splicing factor U2AF 65 99.3 1.1E-11 3.6E-16 93.8 9.0 74 68-141 5-96 (105)
370 1jmt_A Splicing factor U2AF 35 99.2 2.6E-12 8.9E-17 97.0 3.2 67 73-139 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 99.2 4.4E-11 1.5E-15 92.2 6.8 73 69-141 21-108 (118)
372 1owx_A Lupus LA protein, SS-B, 99.1 2.1E-10 7.3E-15 88.1 8.9 72 229-305 16-93 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 1.7E-10 5.8E-15 83.3 7.6 72 229-307 5-85 (91)
374 3s6e_A RNA-binding protein 39; 99.1 5.8E-10 2E-14 85.3 10.0 72 69-142 8-93 (114)
375 1owx_A Lupus LA protein, SS-B, 99.0 4.8E-09 1.6E-13 80.5 10.7 70 66-139 16-93 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 2E-09 6.8E-14 78.0 5.9 71 228-305 12-92 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 1.7E-08 5.9E-13 72.8 8.5 66 69-141 8-85 (91)
378 3dxb_A Thioredoxin N-terminall 98.6 5E-08 1.7E-12 83.5 6.3 64 242-308 140-213 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.5 1.6E-07 5.5E-12 68.0 6.2 64 69-139 16-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.4 3.2E-07 1.1E-11 78.4 6.3 62 80-141 141-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.4 8.3E-07 2.8E-11 65.6 7.0 69 231-304 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.2 7.3E-06 2.5E-10 60.6 7.7 68 67-138 20-96 (117)
383 1uw4_A UPF3X; nonsense mediate 97.9 9.4E-05 3.2E-09 53.5 9.9 63 233-295 3-73 (91)
384 2dhx_A Poly (ADP-ribose) polym 97.9 8.9E-05 3.1E-09 54.3 9.6 66 67-138 7-80 (104)
385 1whv_A Poly(A)-specific ribonu 97.7 0.00017 5.9E-09 52.2 8.3 54 69-129 17-70 (100)
386 1wey_A Calcipressin 1; structu 97.6 0.00012 4.1E-09 53.9 5.8 73 231-308 5-84 (104)
387 2dhx_A Poly (ADP-ribose) polym 97.4 0.0012 4E-08 48.4 9.2 66 231-303 8-79 (104)
388 3ctr_A Poly(A)-specific ribonu 97.3 0.0002 6.9E-09 51.9 4.4 54 69-129 7-60 (101)
389 1wey_A Calcipressin 1; structu 97.3 0.00066 2.3E-08 49.9 6.9 68 69-140 6-82 (104)
390 3ctr_A Poly(A)-specific ribonu 97.1 0.00086 2.9E-08 48.6 5.6 52 231-287 6-59 (101)
391 1whv_A Poly(A)-specific ribonu 97.0 0.0034 1.2E-07 45.4 7.8 52 231-287 16-69 (100)
392 2l08_A Regulator of nonsense t 96.9 0.0016 5.4E-08 47.3 5.8 65 231-295 9-81 (97)
393 1uw4_A UPF3X; nonsense mediate 96.5 0.014 4.8E-07 42.0 8.2 61 69-129 2-66 (91)
394 3pq1_A Poly(A) RNA polymerase; 96.5 0.0016 5.3E-08 61.2 3.9 58 68-129 53-110 (464)
395 1wwh_A Nucleoporin 35, nucleop 96.3 0.015 5.2E-07 43.8 7.4 61 231-294 24-85 (119)
396 3pq1_A Poly(A) RNA polymerase; 96.0 0.004 1.4E-07 58.4 3.8 60 231-292 53-113 (464)
397 2l08_A Regulator of nonsense t 95.0 0.055 1.9E-06 39.2 6.1 61 69-129 10-74 (97)
398 1wwh_A Nucleoporin 35, nucleop 94.7 0.1 3.5E-06 39.2 7.0 58 67-129 23-80 (119)
399 3d45_A Poly(A)-specific ribonu 92.9 0.34 1.2E-05 46.1 8.7 62 68-136 440-501 (507)
400 3p3d_A Nucleoporin 53; structu 91.0 0.079 2.7E-06 40.5 1.5 71 233-307 9-98 (132)
401 3d45_A Poly(A)-specific ribonu 86.6 1 3.4E-05 42.9 6.1 53 231-288 440-494 (507)
402 3p3d_A Nucleoporin 53; structu 82.6 2.4 8.2E-05 32.3 5.4 70 69-139 8-96 (132)
403 2g0c_A ATP-dependent RNA helic 80.4 5.9 0.0002 26.6 6.5 66 233-306 2-75 (76)
404 3ts2_A Protein LIN-28 homolog 57.5 2.2 7.5E-05 33.3 0.0 30 245-278 1-30 (148)
405 4e8u_A Putative uncharacterize 41.3 44 0.0015 26.5 5.2 57 70-127 14-82 (172)
406 2ki0_A DS119; beta-alpha-beta, 39.2 13 0.00046 20.2 1.3 20 66-90 3-22 (36)
407 4e8u_A Putative uncharacterize 38.4 38 0.0013 26.9 4.4 49 234-282 15-75 (172)
408 3aqq_A Calcium-regulated heat 35.6 40 0.0014 26.0 4.0 41 261-305 67-110 (147)
409 2j5a_A 30S ribosomal protein S 34.2 65 0.0022 23.3 4.9 65 234-305 13-101 (110)
410 4eyt_A Telomerase associated p 32.1 1.3E+02 0.0044 21.0 10.1 67 66-138 10-78 (129)
411 1cqm_A Ribosomal protein S6; a 27.7 73 0.0025 22.6 4.1 62 239-305 10-94 (101)
412 4eyt_A Telomerase associated p 26.1 1.7E+02 0.0057 20.4 7.1 49 231-283 12-60 (129)
413 2kcm_A Cold shock domain famil 24.4 1E+02 0.0035 20.5 4.1 22 267-288 10-33 (74)
414 2gu3_A YPMB protein; APC1927, 23.8 65 0.0022 24.3 3.4 45 235-279 67-128 (136)
415 3a0j_A Cold shock protein; OB- 21.5 1.8E+02 0.0062 19.1 5.0 35 267-305 11-50 (73)
416 1g6p_A Cold shock protein TMCS 21.1 1.3E+02 0.0043 19.4 4.0 35 267-305 10-49 (66)
417 1c9o_A CSPB, cold-shock protei 20.6 1.5E+02 0.0051 19.0 4.3 36 267-306 11-51 (66)
418 2e5p_A Protein PHF1, PHD finge 20.5 36 0.0012 22.3 1.1 22 256-281 28-49 (68)
419 4a4j_A Pacszia, cation-transpo 20.3 1.6E+02 0.0054 18.0 5.6 48 232-281 4-51 (69)
420 1ik9_C DNA ligase IV; DNA END 20.1 65 0.0022 18.4 2.1 16 240-255 19-34 (37)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.1e-34 Score=248.17 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=136.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.+||||+|||+++||++|+++|++||.|..|.|..+ ++.++|||||+|.+.++|++|++.++ .|+.|++.++..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 389999999999999999999999999999887654 56788999999999999999999998 899999988753
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
.......
T Consensus 95 ~~~~~~~------------------------------------------------------------------------- 101 (213)
T 4f02_A 95 DPSLRKS------------------------------------------------------------------------- 101 (213)
T ss_dssp CTHHHHH-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 2211000
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
..++|||+||++++|+++|+++|++||.|+.|+|+.+. ++|||||+|.+.++|. +..|||..|.|
T Consensus 102 --------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g--- 170 (213)
T 4f02_A 102 --------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND--- 170 (213)
T ss_dssp --------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred --------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC---
Confidence 14579999999999999999999999999999997543 4689999999999999 89999999966
Q ss_pred CceEEEEcCcc
Q 020632 298 DGISSNWDQWR 308 (323)
Q Consensus 298 ~~l~V~~ak~~ 308 (323)
+.|+|+||+.+
T Consensus 171 ~~i~V~~a~~~ 181 (213)
T 4f02_A 171 RKVFVGRFKSR 181 (213)
T ss_dssp EECEEEECCCH
T ss_pred EEEEEEEcCCC
Confidence 99999999775
No 2
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=3.6e-32 Score=243.76 Aligned_cols=237 Identities=18% Similarity=0.225 Sum_probs=145.8
Q ss_pred CcceEEEeCCCCCCchHHHH----HHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~----~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
..++|||+|||+++++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 34999999999999999966 8999999999988775 55689999999999999999999998 999999999
Q ss_pred ccCCCcc--cCCCCCCCCcc-CCcCCCCCCCCC--CCC-----------CCCCCCCCCCCCCCCCC--CCCCCCCCCCCC
Q 020632 139 AKSNSRS--KRSRTDDEWTG-SDKKARGPSAFS--RGT-----------ADLGIGSVHMPGMGNSA--FNTIGYPHTQSH 200 (323)
Q Consensus 139 a~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~-----------~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ 200 (323)
++.+... ++......... ...+........ ... ...+......+...... ....+..+....
T Consensus 87 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (282)
T 3pgw_A 87 AKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPP 166 (282)
T ss_pred eccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCC
Confidence 9765541 11111111100 000000000000 000 00000000000000000 000000000000
Q ss_pred CC-cCCCCCCcc---------ccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCC
Q 020632 201 EN-FDARGGSLI---------TTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPP 270 (323)
Q Consensus 201 ~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g 270 (323)
.. ......... .................+++++|||+||+.++|+++|+++|++||.|++|++..++ +|
T Consensus 167 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g 245 (282)
T 3pgw_A 167 PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-HD 245 (282)
T ss_pred CCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-Cc
Confidence 00 000000000 00000000001111344578999999999999999999999999999999999744 59
Q ss_pred eEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 271 VAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 271 ~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
||||+|.+.++|. +..|||..|.+ |+.|+|+|||.
T Consensus 246 ~afV~f~~~~~A~~A~~~l~g~~~~~--g~~l~v~~akk 282 (282)
T 3pgw_A 246 IAFVEFDNEVQAGAARDALQGFKITQ--NNAMKISFAKK 282 (282)
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEeCC--CCEEEEEEecC
Confidence 9999999999999 99999999961 39999999963
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=226.40 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=133.9
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
|+|||+|||.++++++|+++|+.||.|..+.+..+ .+.++|||||+|.+.++|++|++.++ .|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 69999999999999999999999999998887654 45688999999999999999999998 99999999885422
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
..
T Consensus 81 ~~------------------------------------------------------------------------------ 82 (166)
T 3md3_A 81 QS------------------------------------------------------------------------------ 82 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
...+.++|||+|||.++|+++|+++|++||.|..+++..+ .++|||||+|.+.++|. +..|||..|.|
T Consensus 83 ---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 156 (166)
T 3md3_A 83 ---SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG--- 156 (166)
T ss_dssp ---CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred ---CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC---
Confidence 0012678999999999999999999999999999999754 23679999999999999 88899999966
Q ss_pred CceEEEEcC
Q 020632 298 DGISSNWDQ 306 (323)
Q Consensus 298 ~~l~V~~ak 306 (323)
+.|+|+||+
T Consensus 157 ~~i~v~~a~ 165 (166)
T 3md3_A 157 RPLRINWAA 165 (166)
T ss_dssp EECEEEESC
T ss_pred cEEEEEecC
Confidence 999999996
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.4e-32 Score=231.50 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=133.3
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (323)
...++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++||+..+ .|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 34599999999999999999999999999988877654 46678999999999999999998854 89999999886
Q ss_pred CCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCC
Q 020632 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (323)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
......+..
T Consensus 91 ~~~~~~~~~----------------------------------------------------------------------- 99 (196)
T 1l3k_A 91 SREDSQRPG----------------------------------------------------------------------- 99 (196)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 432211100
Q ss_pred CCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccC
Q 020632 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEK 295 (323)
Q Consensus 221 ~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~ 295 (323)
.....++|||+|||.++|+++|+++|+.||.|..|++..+. ++|||||+|.+.++|. ...++|..|.|
T Consensus 100 ------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G- 172 (196)
T 1l3k_A 100 ------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG- 172 (196)
T ss_dssp ---------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETT-
T ss_pred ------cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECC-
Confidence 01126789999999999999999999999999999998643 4689999999999999 44558999966
Q ss_pred CCCceEEEEcCccccc
Q 020632 296 LSDGISSNWDQWRLRS 311 (323)
Q Consensus 296 ~g~~l~V~~ak~~~~~ 311 (323)
+.|+|+|+..+...
T Consensus 173 --~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 173 --HNCEVRKALSKQEM 186 (196)
T ss_dssp --EECEEEECC-----
T ss_pred --EEEEEEecCChhHh
Confidence 99999999777444
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.2e-32 Score=225.01 Aligned_cols=158 Identities=18% Similarity=0.296 Sum_probs=132.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CC--CCCceEEEEEccHHHHHHHHHHhC-------CCCeEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQ--NSQPFAFAVFSDQQSALGAMYALN-------KGSTLY 135 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~--~~~g~aFV~f~~~~~A~~A~~~l~-------~g~~l~ 135 (323)
+.++|||+|||+++++++|+++|++||.|..+.+..+ ++ .++|||||+|.+.++|++|++.++ .++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4599999999999999999999999999988877654 22 578999999999999999999997 256677
Q ss_pred EEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCcccccc
Q 020632 136 IDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAK 215 (323)
Q Consensus 136 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (323)
+.++......
T Consensus 82 ~~~~~~~~~~---------------------------------------------------------------------- 91 (175)
T 3nmr_A 82 MKPADSEKNN---------------------------------------------------------------------- 91 (175)
T ss_dssp EEECGGGCCS----------------------------------------------------------------------
T ss_pred Eccccccccc----------------------------------------------------------------------
Confidence 6665432110
Q ss_pred CCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCc
Q 020632 216 FNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSL 290 (323)
Q Consensus 216 ~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~ 290 (323)
....++|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +..|||.
T Consensus 92 ------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 92 ------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp ------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred ------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 0016789999999999999999999999999999997643 3679999999999999 9999999
Q ss_pred eeccCCCCceEEEEcC
Q 020632 291 LFKEKLSDGISSNWDQ 306 (323)
Q Consensus 291 ~l~g~~g~~l~V~~ak 306 (323)
.+.+..++.|+|+||.
T Consensus 160 ~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 160 QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCCTTCSSCCEEEECC
T ss_pred cccCCCCCCeEEEecC
Confidence 8876446999999983
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.7e-31 Score=232.47 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=138.4
Q ss_pred ceEEEeCCCC-CCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 69 RTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 69 ~tlfV~nLp~-~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
++|||+|||. ++++++|+++|+.||.|..+.|..+. +|||||+|.+.++|++|++.|+ .|+.|+|.+++...
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 9999999999 99999999999999999999887543 7899999999999999999888 99999999997553
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
........... ...+.. ......... .+ .. ..
T Consensus 112 ~~~~~~~~~~~-~~~~~~----------~~~~~~~~~-------------~~----------------~~--------~~ 143 (229)
T 2adc_A 112 VQLPREGQEDQ-GLTKDY----------GNSPLHRFK-------------KP----------------GS--------KN 143 (229)
T ss_dssp CCCCCSSSSTT-TTEEEC----------TTCSSCCCC-------------ST----------------TS--------GG
T ss_pred ccCcccccccc-cccccc----------ccCcccccC-------------Cc----------------cc--------cc
Confidence 31111000000 000000 000000000 00 00 00
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
.....+++++|||+||+.++|+++|+++|++|| .|..|+++.+ ++|||||+|.+.++|. +..|||..|.+ |+.|
T Consensus 144 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~--g~~l 220 (229)
T 2adc_A 144 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGE--NHHL 220 (229)
T ss_dssp GTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSS--SCBC
T ss_pred cccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCC--CCeE
Confidence 001123478999999999999999999999999 9999999763 4599999999999999 88999999961 3999
Q ss_pred EEEEcCcc
Q 020632 301 SSNWDQWR 308 (323)
Q Consensus 301 ~V~~ak~~ 308 (323)
+|+|++.+
T Consensus 221 ~v~~a~~~ 228 (229)
T 2adc_A 221 RVSFSKST 228 (229)
T ss_dssp EEEECSSC
T ss_pred EEEEecCC
Confidence 99999875
No 7
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=1e-31 Score=229.78 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=135.5
Q ss_pred cceEEEeCCC-CCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLP-EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp-~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
+++|||+||+ +++++++|+++|++||.|..|.|..+ .+|||||+|.+.++|++||+.|| .|+.|+|.+++.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 4899999999 89999999999999999999988743 47999999999999999999999 9999999999754
Q ss_pred CcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCC
Q 020632 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (323)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
....+... ... ..... . .++...... ........ .
T Consensus 81 ~~~p~~~~--~~~--~~~~~-~----~~~~~~~~~-----------------------------r~~~~~~~---~---- 115 (205)
T 3tyt_A 81 AIMPGQSY--GLE--DGSCS-Y----KDFSESRNN-----------------------------RFSTPEQA---A---- 115 (205)
T ss_dssp CCCCCSCC--BCT--TSCBS-E----EECTTCTTC-----------------------------SCSSHHHH---T----
T ss_pred ccCCCccc--ccc--cCCcc-c----cccCCCccc-----------------------------cccCcccc---c----
Confidence 32111000 000 00000 0 000000000 00000000 0
Q ss_pred CCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCe--EEEEEecC--CCCCeEEEEecCchhhH--HHhhCCceeccCC
Q 020632 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGF--LKLKIQST--YGPPVAFVDFQVTCVCV--CHILFSLLFKEKL 296 (323)
Q Consensus 223 ~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i--~~v~i~~~--~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~ 296 (323)
.....+++++|||+|||+++||++|+++|++||.| +.|+++.+ +++|||||+|++.++|. +..|||..|.+.+
T Consensus 116 -~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 116 -KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp -TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred -ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 00112357899999999999999999999999999 89999765 34589999999999999 9999999998742
Q ss_pred -CCceEEEEc
Q 020632 297 -SDGISSNWD 305 (323)
Q Consensus 297 -g~~l~V~~a 305 (323)
..++.|.|+
T Consensus 195 ~~~p~~vk~~ 204 (205)
T 3tyt_A 195 GPYPYTLKLC 204 (205)
T ss_dssp SSSCEECEEE
T ss_pred CCcceEEEec
Confidence 236777765
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=9.9e-32 Score=221.97 Aligned_cols=154 Identities=25% Similarity=0.346 Sum_probs=134.8
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.++ .|+.|+|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 499999999999999999999999999998887654 55678999999999999999999888 899999998854
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
....
T Consensus 83 ~~~~---------------------------------------------------------------------------- 86 (168)
T 1b7f_A 83 GGES---------------------------------------------------------------------------- 86 (168)
T ss_dssp CSST----------------------------------------------------------------------------
T ss_pred Cccc----------------------------------------------------------------------------
Confidence 2110
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
...++|||+|||.++|+++|+++|++||.|..+++..+. ++|||||+|.+.++|. +..|||..|.|
T Consensus 87 -------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 158 (168)
T 1b7f_A 87 -------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG- 158 (168)
T ss_dssp -------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT-
T ss_pred -------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC-
Confidence 015679999999999999999999999999999997643 3579999999999999 88999999965
Q ss_pred CCCceEEEEc
Q 020632 296 LSDGISSNWD 305 (323)
Q Consensus 296 ~g~~l~V~~a 305 (323)
.++.|+|+||
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 4499999997
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=1.5e-31 Score=230.02 Aligned_cols=169 Identities=11% Similarity=0.142 Sum_probs=138.0
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 589999999999999999999999999999988654 56689999999999999999999888 899999987654
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
........... .
T Consensus 108 ~~~~~~~~~~~-----~--------------------------------------------------------------- 119 (216)
T 2qfj_A 108 IGQAQPIIDQL-----A--------------------------------------------------------------- 119 (216)
T ss_dssp CGGGHHHHHHH-----H---------------------------------------------------------------
T ss_pred ccccchhhhhh-----h---------------------------------------------------------------
Confidence 32210000000 0
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
......++|||+||+.++|+++|+++|++||.|+.|++..+. .+|||||+|.+.++|. +..|||..|.|
T Consensus 120 ----~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g- 194 (216)
T 2qfj_A 120 ----EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG- 194 (216)
T ss_dssp ----HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS-
T ss_pred ----cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC-
Confidence 000126789999999999999999999999999999998653 3689999999999999 88999999966
Q ss_pred CCCceEEEEcCccccc
Q 020632 296 LSDGISSNWDQWRLRS 311 (323)
Q Consensus 296 ~g~~l~V~~ak~~~~~ 311 (323)
+.|+|+|++.+...
T Consensus 195 --~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 195 --QYLRVGKAVTPPMP 208 (216)
T ss_dssp --SBCEEEECSSCSST
T ss_pred --cEEEEEEecCCCCC
Confidence 99999999887443
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=3.9e-31 Score=224.72 Aligned_cols=187 Identities=19% Similarity=0.241 Sum_probs=139.2
Q ss_pred cceEEEeCCCC-CCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~-~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.++|||+|||. ++++++|+++|+.||.|..+.+..+. +|||||+|.+.++|++|++.|+ .|+.|+|.+++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 48999999999 99999999999999999999887543 7899999999999999999888 9999999998765
Q ss_pred CcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCC
Q 020632 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (323)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
............ ...+.. ........ ......
T Consensus 80 ~~~~~~~~~~~~-~~~~~~----------~~~~~~r~-------------------------------------~~~~~~ 111 (198)
T 1qm9_A 80 NVQLPREGQEDQ-GLTKDY----------GNSPLHRF-------------------------------------KKPGSK 111 (198)
T ss_dssp SCCCSSSSSSSS-SCEEES----------SCCCTTSS-------------------------------------SSCCCC
T ss_pred CcCCCCcCCccc-cccccc----------cCCchhhc-------------------------------------cCcccc
Confidence 431111000000 000000 00000000 000000
Q ss_pred CCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCc
Q 020632 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDG 299 (323)
Q Consensus 223 ~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~ 299 (323)
......+++++|||+||+.++|+++|+++|++|| .|..|+++.+. +|+|||+|.+.++|. +..|||..|.+ |+.
T Consensus 112 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~ 188 (198)
T 1qm9_A 112 NFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RKMALIQMGSVEEAVQALIDLHNHDLGE--NHH 188 (198)
T ss_dssp CCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SSCEEEECSSHHHHHHHHHHHTSSCCSS--CCS
T ss_pred ccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhcCCccCC--CCe
Confidence 0011123588999999999999999999999999 99999997643 599999999999999 88999999961 399
Q ss_pred eEEEEcCcc
Q 020632 300 ISSNWDQWR 308 (323)
Q Consensus 300 l~V~~ak~~ 308 (323)
|+|+|++.+
T Consensus 189 l~v~~a~~~ 197 (198)
T 1qm9_A 189 LRVSFSKST 197 (198)
T ss_dssp CCEEEECCC
T ss_pred EEEEeeccc
Confidence 999999875
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=1.8e-31 Score=219.98 Aligned_cols=153 Identities=25% Similarity=0.324 Sum_probs=132.2
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.++ .|+.|+|.++...
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 89999999999999999999999999988877654 56678999999999999999999988 8999999988532
Q ss_pred CcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCC
Q 020632 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (323)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
...
T Consensus 83 ~~~----------------------------------------------------------------------------- 85 (167)
T 1fxl_A 83 SAS----------------------------------------------------------------------------- 85 (167)
T ss_dssp CGG-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCC
Q 020632 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKL 296 (323)
Q Consensus 223 ~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~ 296 (323)
...++|||+|||.++|+++|+++|++||.|..+++..+. ++|||||+|.+.++|. +..|||..|.| .
T Consensus 86 ------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~ 158 (167)
T 1fxl_A 86 ------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG-A 158 (167)
T ss_dssp ------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT-C
T ss_pred ------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC-C
Confidence 015679999999999999999999999999999997643 3689999999999999 88999999966 1
Q ss_pred CCceEEEEc
Q 020632 297 SDGISSNWD 305 (323)
Q Consensus 297 g~~l~V~~a 305 (323)
...|+|+||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 134999986
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=4.1e-32 Score=224.18 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=134.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC--CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~ 142 (323)
+.++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.++ .|+.|.+.++..+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 4599999999999999999999999999999987764 56789999999999999999999765 8999988876432
Q ss_pred CcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCC
Q 020632 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (323)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 2cjk_A 82 DEQ----------------------------------------------------------------------------- 84 (167)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred hhc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH-HHhhCCceeccCCC
Q 020632 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLS 297 (323)
Q Consensus 223 ~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g 297 (323)
...++|||+|||.++|+++|+++|++||.|..|++..+ .++|||||+|.+.++|. ...|||..|.|
T Consensus 85 ------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g--- 155 (167)
T 2cjk_A 85 ------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKD--- 155 (167)
T ss_dssp ------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSS---
T ss_pred ------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCC---
Confidence 01567999999999999999999999999999999754 35689999999999999 54599999966
Q ss_pred CceEEEEcCcc
Q 020632 298 DGISSNWDQWR 308 (323)
Q Consensus 298 ~~l~V~~ak~~ 308 (323)
+.|+|+||+.+
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999999765
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=8.8e-32 Score=224.10 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=131.7
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEecc-CCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS-STQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
...++|||+|||.++++++|+++|+.||.+..+.+.. ..+.++|||||+|.+.++|++|++ |+ .|+.|+|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 3459999999999999999999999999865533332 356789999999999999999995 77 99999999886
Q ss_pred CCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCC
Q 020632 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (323)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
.+....
T Consensus 90 ~~~~~~-------------------------------------------------------------------------- 95 (175)
T 1fje_B 90 GRDSKK-------------------------------------------------------------------------- 95 (175)
T ss_dssp CSSCST--------------------------------------------------------------------------
T ss_pred Cccccc--------------------------------------------------------------------------
Confidence 432100
Q ss_pred CCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 221 ~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
....++|||+|||.++|+++|+++|++||.|..+ ...+.++|||||+|.+.++|. +..|||..|.| +
T Consensus 96 -------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~ 164 (175)
T 1fje_B 96 -------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG---R 164 (175)
T ss_dssp -------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT---E
T ss_pred -------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC---e
Confidence 0026789999999999999999999999998888 444556899999999999999 88899999966 9
Q ss_pred ceEEEEcCcc
Q 020632 299 GISSNWDQWR 308 (323)
Q Consensus 299 ~l~V~~ak~~ 308 (323)
.|+|+||+.+
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 9999999765
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.8e-30 Score=220.16 Aligned_cols=172 Identities=13% Similarity=0.195 Sum_probs=131.9
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCC-----------CceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFP-----------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KG 131 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G-----------~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g 131 (323)
..++|||+|||+++++++|+++|+.|| .|..+.+ +.++|||||+|.+.++|++|+ .|+ .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE----ETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 349999999999999999999999995 3444433 356899999999999999999 777 99
Q ss_pred CeEEEEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCcc
Q 020632 132 STLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLI 211 (323)
Q Consensus 132 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
+.|+|.++.............. . . .+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~-------~------------------~-------------~~---------------- 103 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPS-------V------------------Y-------------VP---------------- 103 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSS-------C------------------C-------------CT----------------
T ss_pred ceEEEeCCCCCCCCCCCcCCCc-------C------------------C-------------CC----------------
Confidence 9999998765322110000000 0 0 00
Q ss_pred ccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HH
Q 020632 212 TTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CH 285 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~ 285 (323)
...........++|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +.
T Consensus 104 ---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 104 ---------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp ---------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred ---------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 00000111247889999999999999999999999999999997643 3689999999999999 88
Q ss_pred hhCCceeccCCCCceEEEEcCccc
Q 020632 286 ILFSLLFKEKLSDGISSNWDQWRL 309 (323)
Q Consensus 286 ~lnG~~l~g~~g~~l~V~~ak~~~ 309 (323)
.|||..|.| +.|+|+|++.+.
T Consensus 175 ~l~g~~~~g---~~l~v~~a~~~~ 195 (198)
T 2yh0_A 175 GLNGMQLGD---KKLLVQRASVGA 195 (198)
T ss_dssp HHTTCEETT---EECEEEESCCCC
T ss_pred HcCCCEECC---EEEEEEECCCCC
Confidence 999999966 999999997763
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=4.5e-30 Score=212.94 Aligned_cols=148 Identities=15% Similarity=0.248 Sum_probs=126.4
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcC----C-------CceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREF----P-------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KG 131 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~----G-------~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g 131 (323)
+.++|||+|||.++++++|+++|++| | .|..+.+. .++|||||+|.+.++|++|+ .++ .|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~----~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE----TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec----CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 45999999999999999999999999 5 45555443 46899999999999999999 777 99
Q ss_pred CeEEEEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCcc
Q 020632 132 STLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLI 211 (323)
Q Consensus 132 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (323)
+.|+|.++......
T Consensus 78 ~~i~v~~~~~~~~~------------------------------------------------------------------ 91 (172)
T 2g4b_A 78 QSLKIRRPHDYQPL------------------------------------------------------------------ 91 (172)
T ss_dssp EECEEECCSSCCCC------------------------------------------------------------------
T ss_pred ceeeecCCcccCCC------------------------------------------------------------------
Confidence 99999875421100
Q ss_pred ccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HH
Q 020632 212 TTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CH 285 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~ 285 (323)
...++|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +.
T Consensus 92 -----------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 92 -----------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp -----------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH
T ss_pred -----------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 015679999999999999999999999999999997653 3689999999999999 88
Q ss_pred hhCCceeccCCCCceEEEEc
Q 020632 286 ILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 286 ~lnG~~l~g~~g~~l~V~~a 305 (323)
.|||..|.| +.|+|+||
T Consensus 155 ~l~g~~~~g---~~l~V~~A 171 (172)
T 2g4b_A 155 GLNGMQLGD---KKLLVQRA 171 (172)
T ss_dssp HHTTCEETT---EECEEEEC
T ss_pred HcCCCEECC---eEEEEEeC
Confidence 999999966 99999997
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.3e-29 Score=227.27 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=138.2
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.++ .|+.|.|.++..+
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 89999999999999999999999999988876543 56788999999999999999999998 9999999998643
Q ss_pred CcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCC
Q 020632 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (323)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
.....
T Consensus 176 ~~~~~--------------------------------------------------------------------------- 180 (284)
T 3smz_A 176 QLTPA--------------------------------------------------------------------------- 180 (284)
T ss_dssp GCCTT---------------------------------------------------------------------------
T ss_pred CCCcc---------------------------------------------------------------------------
Confidence 21000
Q ss_pred CCCCCCCCcCeEEEcCCCCCC-CHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCceeccCC
Q 020632 223 SGPKNVTPCATLFVANLGPTC-TEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLFKEKL 296 (323)
Q Consensus 223 ~~~~~~~~~~tLfV~nLp~~~-te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~ 296 (323)
....++|||+|||.++ |+++|+++|+.||.|..|++..+ .++|+|||+|.+.++|. +..|||..|.|
T Consensus 181 -----~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 253 (284)
T 3smz_A 181 -----LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG-- 253 (284)
T ss_dssp -----TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT--
T ss_pred -----cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC--
Confidence 0126789999999995 99999999999999999999764 23689999999999999 89999999966
Q ss_pred CCceEEEEcCcccccc
Q 020632 297 SDGISSNWDQWRLRSW 312 (323)
Q Consensus 297 g~~l~V~~ak~~~~~~ 312 (323)
+.|+|+|++.+..++
T Consensus 254 -~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 254 -SHLRVSFCAPGPPGR 268 (284)
T ss_dssp -EECEEEECCSSSCHH
T ss_pred -eEEEEEEecCCCccc
Confidence 999999998775443
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3.9e-29 Score=221.74 Aligned_cols=150 Identities=21% Similarity=0.217 Sum_probs=132.3
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
...++|||+|||.++|+++|+++|+.||.|..+.+. +++|||||+|.+.++|++|++.++ .|+.|+|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 345999999999999999999999999999999886 457999999999999999999988 899999998741
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
T Consensus 96 -------------------------------------------------------------------------------- 95 (261)
T 3sde_A 96 -------------------------------------------------------------------------------- 95 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhh-CCceeccC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHIL-FSLLFKEK 295 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~l-nG~~l~g~ 295 (323)
..+|||+||+.++|+++|+++|+.||.|..|++..+. ++|||||+|.+.++|. +..| +|..+.+.
T Consensus 96 ---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 ---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp ---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred ---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 4569999999999999999999999999999997542 3689999999999999 8898 56666544
Q ss_pred CCCceEEEEcCcc
Q 020632 296 LSDGISSNWDQWR 308 (323)
Q Consensus 296 ~g~~l~V~~ak~~ 308 (323)
.++.|+|++++..
T Consensus 167 ~~r~i~v~~~~~~ 179 (261)
T 3sde_A 167 TPRPVIVEPMEQF 179 (261)
T ss_dssp SCCBCEEEECCCE
T ss_pred CCceEEEeecccc
Confidence 5699999999765
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.8e-29 Score=227.24 Aligned_cols=161 Identities=21% Similarity=0.257 Sum_probs=133.3
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCC-CceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G-~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|+.|| .|..+.+..+ .+.++|||||+|.+.++|++|++.|+ .|+.|.|.++..
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 48999999999999999999999999 9999887654 35678999999999999999999998 999999999865
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
.....+..
T Consensus 197 ~~~~~~~~------------------------------------------------------------------------ 204 (292)
T 2ghp_A 197 LEKSKRTD------------------------------------------------------------------------ 204 (292)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred Cccccccc------------------------------------------------------------------------
Confidence 33211110
Q ss_pred CCCCCCCCCcCeEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEecC-----CCCCeEEEEecCchhhH--HHhhCCceec
Q 020632 222 PSGPKNVTPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQST-----YGPPVAFVDFQVTCVCV--CHILFSLLFK 293 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~~-----~~~g~aFV~F~~~~~A~--~~~lnG~~l~ 293 (323)
......++|||+|||.+ +|+++|+++|+.||.|..|++..+ .++|||||+|.+.++|. + .|||..|.
T Consensus 205 ----~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 205 ----SATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp ------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred ----ccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 00112678999999999 999999999999999999999763 44789999999999999 7 99999996
Q ss_pred cCCCCceEEEEcCcc
Q 020632 294 EKLSDGISSNWDQWR 308 (323)
Q Consensus 294 g~~g~~l~V~~ak~~ 308 (323)
| +.|+|+||+.+
T Consensus 280 g---~~i~V~~a~~k 291 (292)
T 2ghp_A 280 N---REISVSLADKK 291 (292)
T ss_dssp T---EEEEEEECCCC
T ss_pred C---cEEEEEEecCC
Confidence 6 99999999765
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=6.3e-29 Score=223.70 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=130.1
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.+.++|||+|||.++++++|+++|+.||.|..|.|..+...++|||||+|.+.++|++|++ ++ .|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 4469999999999999999999999999999998877655578999999999999999995 66 88999988741
Q ss_pred CCcccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCC
Q 020632 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (323)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
T Consensus 117 -------------------------------------------------------------------------------- 116 (292)
T 2ghp_A 117 -------------------------------------------------------------------------------- 116 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 222 ~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
.++|||+|||.++|+++|+++|+.|| .|..|++..+. ++|||||+|.+.++|. +..|||..|.|
T Consensus 117 ---------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 186 (292)
T 2ghp_A 117 ---------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG- 186 (292)
T ss_dssp ---------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT-
T ss_pred ---------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-
Confidence 45699999999999999999999999 99999996533 5799999999999999 88899999966
Q ss_pred CCCceEEEEcCcccc
Q 020632 296 LSDGISSNWDQWRLR 310 (323)
Q Consensus 296 ~g~~l~V~~ak~~~~ 310 (323)
+.|+|.|+.....
T Consensus 187 --~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 187 --YTLVTKVSNPLEK 199 (292)
T ss_dssp --EECEEEECCCC--
T ss_pred --cEEEEEECCCCcc
Confidence 9999999976643
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=2.7e-28 Score=218.70 Aligned_cols=146 Identities=18% Similarity=0.286 Sum_probs=130.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.++|||+|||.++++++|+++|+.|| |..+.+ +.++|||||+|.+.++|++|++.++ .|+.|+|+++..
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~-- 94 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT-- 94 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC--
Confidence 48999999999999999999999999 888877 3678899999999999999999998 899999987421
Q ss_pred cccCCCCCCCCccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCC
Q 020632 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
T Consensus 95 -------------------------------------------------------------------------------- 94 (284)
T 3smz_A 95 -------------------------------------------------------------------------------- 94 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 224 ~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
..+|||+|||.++|+++|+++|+.||.|..++++.+. ++|||||+|.+.++|. +..|||..|.|
T Consensus 95 -------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--- 164 (284)
T 3smz_A 95 -------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP--- 164 (284)
T ss_dssp -------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred -------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC---
Confidence 4569999999999999999999999999999997543 4679999999999999 88999999966
Q ss_pred CceEEEEcCcccc
Q 020632 298 DGISSNWDQWRLR 310 (323)
Q Consensus 298 ~~l~V~~ak~~~~ 310 (323)
+.|+|.|++.+..
T Consensus 165 ~~i~v~~a~~~~~ 177 (284)
T 3smz_A 165 RTLYVHWTDAGQL 177 (284)
T ss_dssp EECEEEECCGGGC
T ss_pred cEEEEEECCCCCC
Confidence 9999999977643
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.6e-22 Score=165.43 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=69.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.++|||+|||+++|+++|+++|++||.|..|++..+ .++|||||+|.+.++|. +..|||..|.| +.|+|+|
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~ 146 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRVQM 146 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS---SEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEE
Confidence 678999999999999999999999999999999754 35799999999999999 88999999966 9999999
Q ss_pred cCccc
Q 020632 305 DQWRL 309 (323)
Q Consensus 305 ak~~~ 309 (323)
++.+.
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98763
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=4.4e-22 Score=161.57 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=106.4
Q ss_pred eccCCCCCCceEEEEEccHHHHHHHHHHh-C----CCCeEEEEEccCCCcccCCCCCCCCccCCcCCCCCCCCCCCCCCC
Q 020632 100 LRSSTQNSQPFAFAVFSDQQSALGAMYAL-N----KGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADL 174 (323)
Q Consensus 100 ~~~~~~~~~g~aFV~f~~~~~A~~A~~~l-~----~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
|..+++.-+|+++|+|.+.++|++|++.+ | .| .|.+.++..............
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~--------------------- 62 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHH--------------------- 62 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCC---------------------
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccccc---------------------
Confidence 33456677899999999999999999999 6 77 899987754322111100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccccccCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhhc
Q 020632 175 GIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSK 254 (323)
Q Consensus 175 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLfV~nLp~~~te~~L~~~F~~ 254 (323)
.........+.++|||+|||+++|+++|+++|++
T Consensus 63 ----------------------------------------------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 96 (150)
T 2i2y_A 63 ----------------------------------------------HHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGY 96 (150)
T ss_dssp ----------------------------------------------CCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHH
T ss_pred ----------------------------------------------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 0000011123788999999999999999999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 255 CPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 255 fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
||.|..|++..+ ++|||||+|.+.++|. +..|||..|.| +.|+|+|++.+
T Consensus 97 ~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~~ 148 (150)
T 2i2y_A 97 YGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG---CRVRVELSNGE 148 (150)
T ss_dssp HSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS---SCCEEEECCCC
T ss_pred hCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEcCCC
Confidence 999999999875 5699999999999999 88999999966 99999999766
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.4e-22 Score=157.13 Aligned_cols=74 Identities=20% Similarity=0.417 Sum_probs=68.8
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.+|||+|||+++++++|+++|++||.|..|.|..+.+.++|||||+|.+.++|++||+.|+ .|+.|+|.+++.+
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 7899999999999999999999999999998877666689999999999999999999998 9999999998654
No 24
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=134.56 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=68.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCce--eccCCCCceEEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLL--FKEKLSDGISSNW 304 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~--l~g~~g~~l~V~~ 304 (323)
+++++|||+|||+++|+++|+++|++||.|++|++++ .||||||+|++.++|. +..|||.. |.| +.|+|+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G---r~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAG---HPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETT---EEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCC---cEEEEEe
Confidence 4689999999999999999999999999999999986 3599999999999999 89999986 545 9999999
Q ss_pred cCcc
Q 020632 305 DQWR 308 (323)
Q Consensus 305 ak~~ 308 (323)
|+.+
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9765
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=135.38 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=67.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
..+|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +..|||..|.| +.|+|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g---r~l~V~~ 95 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS---KTIKVSY 95 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEE
Confidence 6789999999999999999999999999999997643 4679999999999999 88999999966 9999999
Q ss_pred cCc
Q 020632 305 DQW 307 (323)
Q Consensus 305 ak~ 307 (323)
|+.
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 963
No 26
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=135.87 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=68.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhC--CceeccCCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILF--SLLFKEKLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~ln--G~~l~g~~g~~l~V~~a 305 (323)
+.++|||+|||+++||++|+++|++||.|++|+|+++ +|||||+|++.++|. +..|+ |..|.| +.|+|+||
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G---r~l~V~~A 89 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG---QPIYIQFS 89 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT---EECCBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEEEEc
Confidence 4788999999999999999999999999999999975 599999999999999 77776 478855 99999999
Q ss_pred Cccccc
Q 020632 306 QWRLRS 311 (323)
Q Consensus 306 k~~~~~ 311 (323)
+.+..+
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 876433
No 27
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=131.44 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhh--CCceeccCCCCceEEE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHIL--FSLLFKEKLSDGISSN 303 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~l--nG~~l~g~~g~~l~V~ 303 (323)
.+++++|||+|||+++|+++|+++|++||.|++|+++++ +|||||+|++.++|. +..| ++..|.| +.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G---r~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN---QPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT---EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC---cEEEEE
Confidence 346889999999999999999999999999999999875 599999999999999 7765 5778865 999999
Q ss_pred EcCccccc
Q 020632 304 WDQWRLRS 311 (323)
Q Consensus 304 ~ak~~~~~ 311 (323)
|++.+.-+
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99876444
No 28
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=133.36 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=68.4
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++|+++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3589999999999999999999999999998887654 56788999999999999999999998 99999999996
Q ss_pred C
Q 020632 141 S 141 (323)
Q Consensus 141 ~ 141 (323)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 29
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=132.22 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=69.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCce--eccCCCCceEEE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLL--FKEKLSDGISSN 303 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~--l~g~~g~~l~V~ 303 (323)
.+++++|||+||++++|+++|+++|++||.|.+|+++++ +|||||+|++.++|. +..|||.. |.| +.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G---r~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG---QQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS---SBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEEE
Confidence 346899999999999999999999999999999999874 599999999999999 88887654 755 999999
Q ss_pred EcCcccccc
Q 020632 304 WDQWRLRSW 312 (323)
Q Consensus 304 ~ak~~~~~~ 312 (323)
|++.+..++
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 998764443
No 30
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=131.13 Aligned_cols=85 Identities=20% Similarity=0.182 Sum_probs=74.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 227 ~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
...+.++|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG---KEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT---EEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC---CeEEE
Confidence 34458899999999999999999999999999999997643 4689999999999999 88899999966 99999
Q ss_pred EEcCcccccccc
Q 020632 303 NWDQWRLRSWIQ 314 (323)
Q Consensus 303 ~~ak~~~~~~~~ 314 (323)
+|++.+..+++.
T Consensus 88 ~~a~~~~~~~~~ 99 (103)
T 2cqi_A 88 NWATTPSSQKSG 99 (103)
T ss_dssp EECCCTTCCCCC
T ss_pred EECCCCcccccC
Confidence 999887655544
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=6.7e-19 Score=135.01 Aligned_cols=77 Identities=18% Similarity=0.030 Sum_probs=70.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+||++++|+++|+++|++||.|.+|+|+.+. ++|||||+|++.++|. +..|||..|.| +.|+|+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g---r~i~V~ 81 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG---NIIHAQ 81 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 47899999999999999999999999999999997543 4789999999999999 99999999966 999999
Q ss_pred EcCccc
Q 020632 304 WDQWRL 309 (323)
Q Consensus 304 ~ak~~~ 309 (323)
+++...
T Consensus 82 ~a~~~~ 87 (110)
T 3s8s_A 82 LDIKGQ 87 (110)
T ss_dssp ECSTTH
T ss_pred ECCCCc
Confidence 997653
No 32
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=1.2e-18 Score=141.53 Aligned_cols=91 Identities=15% Similarity=0.074 Sum_probs=76.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
..+|||+||++.+|+++|+++|++||.|++|++..+.++|||||+|++.++|. +..|||+.|.+ +|+.|+|+|+|.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEEEEecCC
Confidence 45689999999999999999999999999999987666789999999999999 99999999976 4599999999877
Q ss_pred ccc-cccCcceeeec
Q 020632 309 LRS-WIQSFKCVEFA 322 (323)
Q Consensus 309 ~~~-~~~~~~~~~~~ 322 (323)
.-. +.++.+...|.
T Consensus 125 ~l~vk~nn~rsrDyt 139 (164)
T 1sjr_A 125 SLNVKYNNDKSRDYT 139 (164)
T ss_dssp SCCCCCCSSSEEESS
T ss_pred cccccccCCCCcccc
Confidence 322 33444554443
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=4.3e-18 Score=129.33 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=72.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.+.++|||+|||.++|+++|+++|++||.|..|+|..+. .+|||||+|.+.++|. +..|||..|.+..++.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 458899999999999999999999999999999998653 2689999999999999 88999999965333899999
Q ss_pred EcCccccc
Q 020632 304 WDQWRLRS 311 (323)
Q Consensus 304 ~ak~~~~~ 311 (323)
|++.+..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99877444
No 34
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=131.53 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=66.9
Q ss_pred CcCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCc--eeccCCCCceEEEE
Q 020632 230 PCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSL--LFKEKLSDGISSNW 304 (323)
Q Consensus 230 ~~~tLfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~--~l~g~~g~~l~V~~ 304 (323)
++++|||+|||+ ++|+++|+++|++||.|.+|+|++++ +||||+|++.++|. +..|||. .|.| +.|+|+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G---r~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFG---KPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETT---EECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECC---cEEEEEE
Confidence 588999999999 99999999999999999999998743 89999999999999 8888865 4855 9999999
Q ss_pred cCcc
Q 020632 305 DQWR 308 (323)
Q Consensus 305 ak~~ 308 (323)
|+..
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 35
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-18 Score=127.92 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
..+.++|||+|||.++|+++|+++|++||.|..|+|..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 3457899999999999999999999999999999998643 4789999999999999 88999999966 999999
Q ss_pred EcCcccccc
Q 020632 304 WDQWRLRSW 312 (323)
Q Consensus 304 ~ak~~~~~~ 312 (323)
|++.+..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998875443
No 36
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=127.31 Aligned_cols=78 Identities=13% Similarity=0.281 Sum_probs=70.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
++.++|||+|||.++|+++|+++|++||.|+.|++.++ +|||||+|.+.++|. +..|||..|.+ .|+.|+|+|++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~-~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGG-PDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSS-SSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCC-CCcEEEEEECC
Confidence 35788999999999999999999999999999999875 589999999999999 88899999962 14999999998
Q ss_pred ccc
Q 020632 307 WRL 309 (323)
Q Consensus 307 ~~~ 309 (323)
.+.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 37
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=133.97 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=69.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCC--ceeccCCCCceEEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFS--LLFKEKLSDGISSNW 304 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG--~~l~g~~g~~l~V~~ 304 (323)
+++++|||+|||+++||++|+++|++||.|++|+|+++ +|||||+|++.++|. +..||+ ..|.| +.|+|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G---r~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG---QPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT---BCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC---eEEEEEE
Confidence 35889999999999999999999999999999999985 499999999999999 887874 67855 9999999
Q ss_pred cCcccccc
Q 020632 305 DQWRLRSW 312 (323)
Q Consensus 305 ak~~~~~~ 312 (323)
|+.+..+.
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98774443
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=126.91 Aligned_cols=75 Identities=21% Similarity=0.206 Sum_probs=68.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
++.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 90 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG---RVIKA 90 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT---EEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEE
Confidence 35788999999999999999999999999999999763 34789999999999999 88999999966 99999
Q ss_pred EEcC
Q 020632 303 NWDQ 306 (323)
Q Consensus 303 ~~ak 306 (323)
+|||
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=129.38 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=72.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC--CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST--YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~--~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.+.++|||+|||+++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.+ +.|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT---KPLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEEE
Confidence 35788999999999999999999999999999999864 44689999999999999 88899999966 9999999
Q ss_pred cCcccccc
Q 020632 305 DQWRLRSW 312 (323)
Q Consensus 305 ak~~~~~~ 312 (323)
++.+..++
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98774443
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=1.3e-18 Score=134.57 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=69.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
..+|||+|||+++|+++|+++|++||.|.+|+|+.+. ++|||||+|.+.++|. +..|||..|.| +.|+|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g---~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND---RKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEECC
Confidence 5679999999999999999999999999999997644 3689999999999999 89999999966 999999997
Q ss_pred ccc
Q 020632 307 WRL 309 (323)
Q Consensus 307 ~~~ 309 (323)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 763
No 41
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-19 Score=132.14 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=66.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEecC----CCCCeEEEEecCchhhH--HHhh-CCceeccCCCCceEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQST----YGPPVAFVDFQVTCVCV--CHIL-FSLLFKEKLSDGISS 302 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~l-nG~~l~g~~g~~l~V 302 (323)
+++|||+|||.++||++|+++|++|| .|++|+|+++ .++|||||+|.+.++|. ++.| |+..|.| +.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g---r~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG---QKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT---EEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC---EEEEE
Confidence 46899999999999999999999999 7999999753 45799999999999999 7777 4567855 99999
Q ss_pred EEcCccc
Q 020632 303 NWDQWRL 309 (323)
Q Consensus 303 ~~ak~~~ 309 (323)
+||+.+.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9997763
No 42
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=129.33 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=71.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
.+.++|||+|||.++|+++|+++|++||.|..|++.... .++||||+|.+.++|. +..|||..|.+ +.|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG---YRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT---EECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEc
Confidence 357899999999999999999999999999999997644 4799999999999999 88999999966 99999999
Q ss_pred Cccccc
Q 020632 306 QWRLRS 311 (323)
Q Consensus 306 k~~~~~ 311 (323)
+.+.+.
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876433
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=128.85 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=67.4
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCC-CceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC-----CCCeEEEEEcc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAK 140 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G-~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~ 140 (323)
++|||+|||+++||++|+++|++|| .|..|.|..+ ++.++|||||+|.+.++|++|++.++ .|+.|+|+||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 7999999999999999999999999 6888877654 57789999999999999999999874 89999999997
Q ss_pred CCC
Q 020632 141 SNS 143 (323)
Q Consensus 141 ~~~ 143 (323)
.+.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5e-18 Score=128.52 Aligned_cols=81 Identities=20% Similarity=0.125 Sum_probs=71.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.+ +.|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 86 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG---RELR 86 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT---BCCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC---cEEE
Confidence 345889999999999999999999999999999999753 34789999999999999 88899999966 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876433
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=126.81 Aligned_cols=79 Identities=27% Similarity=0.458 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
...++|||+|||.++++++|+++|++||.|..+.|..+...++|||||+|.+.++|++|++.|+ .|+.|+|+|++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 3459999999999999999999999999999998887766689999999999999999999998 999999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 93 ~~~ 95 (103)
T 2cqi_A 93 PSS 95 (103)
T ss_dssp TTC
T ss_pred Ccc
Confidence 544
No 46
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=129.08 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=66.5
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
++|||+|||.++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|++.|+ .|+.|+|++++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999988755 78999999999999999999988 99999999997654
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=9.1e-19 Score=130.50 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=65.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCC--eEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCc----eeccCCCC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPG--FLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSL----LFKEKLSD 298 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~--i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~----~l~g~~g~ 298 (323)
-+||||+||++++|+++|+++|++||. +.+|+++++ .++|||||+|.+.++|. +..|||. .| +|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i---~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI---DGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE---TTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE---CCE
Confidence 678999999999999999999999995 668888653 45799999999999999 9999997 46 459
Q ss_pred ceEEEEcCc
Q 020632 299 GISSNWDQW 307 (323)
Q Consensus 299 ~l~V~~ak~ 307 (323)
.|+|+|||+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999986
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=127.65 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=70.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 90 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE---NIIKV 90 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS---CEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 3457889999999999999999999999999999998643 3589999999999999 88999999966 99999
Q ss_pred EEcCccc
Q 020632 303 NWDQWRL 309 (323)
Q Consensus 303 ~~ak~~~ 309 (323)
+|++.+.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997763
No 49
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=130.79 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||.++++++|+++|++||.|..+.+..+.+.++|||||+|.+.++|++|++.|+ .|+.|+|++++.+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 349999999999999999999999999999998887766689999999999999999999998 9999999999764
No 50
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=128.32 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=67.0
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCC--ceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC--------CCCe
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPG--YESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--------KGST 133 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~--v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~--------~g~~ 133 (323)
..-.||||+|||+++|+++|+++|++||. +..|.+..+ ++.++|||||+|.+.++|++|++.|| +||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34489999999999999999999999996 556776554 57789999999999999999999987 6999
Q ss_pred EEEEEccC
Q 020632 134 LYIDLAKS 141 (323)
Q Consensus 134 l~v~~a~~ 141 (323)
|+|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 51
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=127.11 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=65.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~ 141 (323)
+++|||+|||+++++++|+++|++||.|..+.+. +++|||||+|.+.++|++|++.++ .|+.|+|+|++.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~----~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM----PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE----cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 4999999999999999999999999999998876 357899999999999999999987 699999999976
Q ss_pred CC
Q 020632 142 NS 143 (323)
Q Consensus 142 ~~ 143 (323)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 52
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=5.7e-18 Score=130.84 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=73.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..+.++|||+||+.++|+++|+++|++||.|..|+|+.+. .+|||||+|.+.++|. +..|||..|.+ +.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 88 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQIR 88 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT---EECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 3458899999999999999999999999999999997643 3689999999999999 88999999966 9999
Q ss_pred EEEcCcccccccc
Q 020632 302 SNWDQWRLRSWIQ 314 (323)
Q Consensus 302 V~~ak~~~~~~~~ 314 (323)
|+|++.+...++.
T Consensus 89 V~~a~~~~~~~~~ 101 (115)
T 2dgo_A 89 TNWATRKPPAPKS 101 (115)
T ss_dssp EEESSCCCCCSCC
T ss_pred EEEccCCCCCCcc
Confidence 9999887555443
No 53
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=1.7e-18 Score=125.01 Aligned_cols=71 Identities=10% Similarity=0.067 Sum_probs=66.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
+.-|||+||++.+||++|+++|.+||.|+++++.. ++|||||+|.+.++|. +..|||..|.+ +.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g---r~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN---TTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC---cEEEEEECC
Confidence 56699999999999999999999999999999987 4699999999999999 99999999976 999999994
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.5e-18 Score=128.31 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=71.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG---KPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS---CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEE
Confidence 3457899999999999999999999999999999997643 4789999999999999 88899999966 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+..+
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999776433
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.5e-18 Score=128.06 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC-----CCCCeEEEEecCchhhH--HHhh-CCceeccCCCC
Q 020632 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST-----YGPPVAFVDFQVTCVCV--CHIL-FSLLFKEKLSD 298 (323)
Q Consensus 227 ~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~-----~~~g~aFV~F~~~~~A~--~~~l-nG~~l~g~~g~ 298 (323)
...+.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..| ||..|.+ +
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---~ 87 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---R 87 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---C
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---C
Confidence 3445889999999999999999999999999999999765 24789999999999999 8999 9999966 9
Q ss_pred ceEEEEcCcccc
Q 020632 299 GISSNWDQWRLR 310 (323)
Q Consensus 299 ~l~V~~ak~~~~ 310 (323)
.|+|+|++.+..
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999987643
No 56
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=4e-18 Score=133.46 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=74.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCe-EEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPV-AFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~-aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
-.|||+||++.+|+++|+++|++||.|.+|++..+. +|| |||+|.+.++|. +..|||+.|.+ .++.|+|+|||.+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEEecCCC
Confidence 357899999999999999999999999999998744 577 999999999999 99999999976 4589999999876
Q ss_pred cc-ccccCcceeeec
Q 020632 309 LR-SWIQSFKCVEFA 322 (323)
Q Consensus 309 ~~-~~~~~~~~~~~~ 322 (323)
.- -+.++.+...|+
T Consensus 107 ~l~v~~n~~~srDyt 121 (130)
T 3zzy_A 107 SLNVKYNNDKSRDYT 121 (130)
T ss_dssp SCCCCCCSSSEEETT
T ss_pred ceeEEecCCCcccCC
Confidence 33 344455555654
No 57
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=2.1e-18 Score=133.32 Aligned_cols=73 Identities=19% Similarity=0.367 Sum_probs=66.8
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|++|++.|| .|+.|+|.++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 399999999999999999999999999999988754 3468999999999999999999998 999999999864
No 58
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=127.03 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=69.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
..++|||+|||.++|+++|+++|++||.|. ++++.+..+|||||+|.+.++|. +..|||..|.| +.|+|+|++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT---DTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS---SCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcCC
Confidence 478999999999999999999999999997 77877778899999999999999 88999999966 9999999977
Q ss_pred c
Q 020632 308 R 308 (323)
Q Consensus 308 ~ 308 (323)
+
T Consensus 94 ~ 94 (97)
T 2e5j_A 94 Q 94 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 59
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.2e-18 Score=124.41 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=69.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|. +..|||..|.+ +.|+|+|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG---VNINVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC---cEEEEEECCC
Confidence 47899999999999999999999999999999998 389999999999999 88999999966 9999999987
Q ss_pred cccc
Q 020632 308 RLRS 311 (323)
Q Consensus 308 ~~~~ 311 (323)
+...
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7444
No 60
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=130.31 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=68.7
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
++|||+||++++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|+++...
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 99999999999999999999999999998877654 46789999999999999999999999 9999999999654
Q ss_pred C
Q 020632 143 S 143 (323)
Q Consensus 143 ~ 143 (323)
.
T Consensus 87 ~ 87 (110)
T 3s8s_A 87 Q 87 (110)
T ss_dssp H
T ss_pred c
Confidence 3
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.8e-18 Score=128.83 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhC------Cceecc
Q 020632 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILF------SLLFKE 294 (323)
Q Consensus 227 ~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~ln------G~~l~g 294 (323)
+..+.++|||+|||+++|+++|+++|++||.|..|+|..+ ..+|||||+|.+.++|. +..|| |..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3445889999999999999999999999999999999754 35789999999999999 88999 999966
Q ss_pred CCCCceEEEEcCccccc
Q 020632 295 KLSDGISSNWDQWRLRS 311 (323)
Q Consensus 295 ~~g~~l~V~~ak~~~~~ 311 (323)
+.|+|+|++.+...
T Consensus 91 ---~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 ---RQLKVDLAVTRDEA 104 (111)
T ss_dssp ---CEEEEECCCCCCCC
T ss_pred ---EEEEEEECCCCccC
Confidence 99999999877443
No 62
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.6e-18 Score=126.29 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=70.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++.+. +|||||+|.+.++|. +..|||..|.+ +.|+|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRG---KQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTT---BCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCC---ceEEEEEc
Confidence 345789999999999999999999999999999999864 599999999999999 88999999966 99999999
Q ss_pred Cccc
Q 020632 306 QWRL 309 (323)
Q Consensus 306 k~~~ 309 (323)
+.+.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7763
No 63
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=125.24 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=70.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.+.++|||+|||.++|+++|+++|++||.|..|+++.+ ..+|||||+|.+.++|. +. |||..|.+ +.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG---KKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS---CBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC---eEEEE
Confidence 35789999999999999999999999999999999754 35799999999999999 65 99999966 99999
Q ss_pred EEcCccccc
Q 020632 303 NWDQWRLRS 311 (323)
Q Consensus 303 ~~ak~~~~~ 311 (323)
+|++.+..+
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999877443
No 64
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-18 Score=129.05 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=66.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (323)
+.++|||+|||++++|++|+++|++||.|..+.|.. ++|||||+|.+.++|++|++.++ .|+.|+|+|++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 349999999999999999999999999999998874 37999999999999999999774 79999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 91 ~~~~ 94 (105)
T 1sjq_A 91 HKEL 94 (105)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 6543
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=3.6e-18 Score=124.52 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=67.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+ .++|||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 4789999999999999999999999999999999653 24789999999999999 88999999966 999999
Q ss_pred EcC
Q 020632 304 WDQ 306 (323)
Q Consensus 304 ~ak 306 (323)
|||
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 986
No 66
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=133.15 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=70.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEec-CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 228 VTPCATLFVANLGPTCTEQELT----QVFSKCPGFLKLKIQS-TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~----~~F~~fG~i~~v~i~~-~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
..++++|||+||++++++++|+ ++|++||.|.+|.+.. +.++|||||+|.+.++|. +..|||..|.| +.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g---r~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG---NPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT---SCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC---CEE
Confidence 3458899999999999999876 6999999999998864 356899999999999999 99999999966 999
Q ss_pred EEEEcCccc
Q 020632 301 SSNWDQWRL 309 (323)
Q Consensus 301 ~V~~ak~~~ 309 (323)
+|+||+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998764
No 67
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.6e-18 Score=126.50 Aligned_cols=78 Identities=22% Similarity=0.209 Sum_probs=70.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG---RMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS---CEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 47899999999999999999999999999999997543 5789999999999999 88999999966 999999
Q ss_pred EcCcccc
Q 020632 304 WDQWRLR 310 (323)
Q Consensus 304 ~ak~~~~ 310 (323)
|++.+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987743
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=1.5e-17 Score=129.02 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=69.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 227 ~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
...+.++|||+||+.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.| +.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT---KRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT---EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC---EEE
Confidence 3456789999999999999999999999999999999754 34789999999999999 88999999966 999
Q ss_pred EEEEcC
Q 020632 301 SSNWDQ 306 (323)
Q Consensus 301 ~V~~ak 306 (323)
+|+|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999985
No 69
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=124.91 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=70.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
++++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG---RPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS---SCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Confidence 37889999999999999999999999999999997643 4789999999999999 88899999966 999999
Q ss_pred EcCccccc
Q 020632 304 WDQWRLRS 311 (323)
Q Consensus 304 ~ak~~~~~ 311 (323)
|++.+...
T Consensus 81 ~a~~~~~~ 88 (95)
T 2dnz_A 81 HVTERLDG 88 (95)
T ss_dssp ESSCCCCC
T ss_pred EcccccCC
Confidence 99877443
No 70
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=2.1e-18 Score=132.18 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=69.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
..+|||+|||+++|+++|+++|++|| .|..+++..+.++|||||+|.+.++|. +..|||..|.| +.|+|++++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G---r~i~V~~a~~ 104 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG---SVITVERDDN 104 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT---EEEEEEESCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEECCC
Confidence 67899999999999999999999999 899999976667899999999999999 88999999966 9999999987
Q ss_pred ccc
Q 020632 308 RLR 310 (323)
Q Consensus 308 ~~~ 310 (323)
+..
T Consensus 105 ~p~ 107 (111)
T 2jvr_A 105 PPP 107 (111)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-17 Score=124.22 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=71.5
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
...++|||+|||.++++++|+++|+.||.|..+.|..+...++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 3449999999999999999999999999999998887665689999999999999999999998 999999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 93 ~~~ 95 (103)
T 2cq3_A 93 RVM 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 72
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=127.04 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=67.0
Q ss_pred CcceEEEeCCCC-CCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEc
Q 020632 67 EVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLA 139 (323)
Q Consensus 67 ~~~tlfV~nLp~-~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a 139 (323)
+.++|||+|||+ +++|++|+++|++||.|..+.|.. ++|||||+|.+.++|++|++.|+ .|++|+|++|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 459999999999 999999999999999999998873 46899999999999999999876 8999999999
Q ss_pred cCCCcc
Q 020632 140 KSNSRS 145 (323)
Q Consensus 140 ~~~~~~ 145 (323)
+.....
T Consensus 90 ~~~~~~ 95 (102)
T 1x4d_A 90 QKYKRI 95 (102)
T ss_dssp CCCTTS
T ss_pred CCCCCC
Confidence 865443
No 73
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=6.2e-18 Score=126.33 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=70.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
++++|||+||+.++|+++|+++|++||.|.+|++..+ .++|||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS---RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEE
Confidence 3688999999999999999999999999999999754 34799999999999999 88999999966 999999
Q ss_pred EcCcccc
Q 020632 304 WDQWRLR 310 (323)
Q Consensus 304 ~ak~~~~ 310 (323)
|++.+..
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 9987743
No 74
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=125.95 Aligned_cols=76 Identities=22% Similarity=0.132 Sum_probs=68.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 89 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRIRV 89 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 458899999999999999999999999999999997643 3679999999999999 88899999966 99999
Q ss_pred EEcCc
Q 020632 303 NWDQW 307 (323)
Q Consensus 303 ~~ak~ 307 (323)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99975
No 75
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.2e-18 Score=122.64 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=67.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhh-CCceeccCCCCceEEEE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHIL-FSLLFKEKLSDGISSNW 304 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~l-nG~~l~g~~g~~l~V~~ 304 (323)
....++|||+|||.++|+++|+++|++||.|..|++... +|||||+|.+.++|. +..| ||..|.| +.|+|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g---~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG---RRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT---EECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC---CEEEEEe
Confidence 345788999999999999999999999999999999974 499999999999999 8888 9999966 9999999
Q ss_pred cC
Q 020632 305 DQ 306 (323)
Q Consensus 305 ak 306 (323)
||
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 76
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=127.60 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=71.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH---LILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC---cEEE
Confidence 3458899999999999999999999999999999997643 3679999999999999 88899999966 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+..+
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999877443
No 77
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=6.6e-18 Score=130.51 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=71.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.++.++|||+|||.++|+++|+++|++||.|..|+|+.+. ++|||||+|.+.++|. +..|||..|.+ +.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM---KRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC---EEEE
Confidence 3457899999999999999999999999999999997643 3579999999999999 88999999966 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999877443
No 78
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=5.4e-18 Score=129.54 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=69.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
....++|||+||+.++|+++|+++|++||.|..|++. +|||||+|.+.++|. +..|||..|.| +.|+|+|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN---QPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT---EECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEe
Confidence 3458899999999999999999999999999999998 499999999999999 88999999966 99999999
Q ss_pred Cccccc
Q 020632 306 QWRLRS 311 (323)
Q Consensus 306 k~~~~~ 311 (323)
+.+.++
T Consensus 101 ~~~~~r 106 (108)
T 2jvo_A 101 KLPAKR 106 (108)
T ss_dssp SCCC--
T ss_pred cCCCCC
Confidence 877443
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=8.1e-18 Score=128.00 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=71.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..+...+|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345789999999999999999999999999999999763 35799999999999999 889999987221349999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999877443
No 80
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3e-17 Score=125.01 Aligned_cols=79 Identities=28% Similarity=0.413 Sum_probs=71.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC---CCCCCceEEEEEccHHHHHHHHHHh-C----CCCeEEEE
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS---TQNSQPFAFAVFSDQQSALGAMYAL-N----KGSTLYID 137 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~---~~~~~g~aFV~f~~~~~A~~A~~~l-~----~g~~l~v~ 137 (323)
...++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.| + .|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34599999999999999999999999999999988765 6678999999999999999999999 6 99999999
Q ss_pred EccCCCc
Q 020632 138 LAKSNSR 144 (323)
Q Consensus 138 ~a~~~~~ 144 (323)
|++.+..
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9976543
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-18 Score=127.54 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=70.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC-------CCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST-------YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~-------~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.+ +.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG---HKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT---EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC---eEE
Confidence 4788999999999999999999999999999999753 33689999999999999 88899999966 999
Q ss_pred EEEEcCcccccc
Q 020632 301 SSNWDQWRLRSW 312 (323)
Q Consensus 301 ~V~~ak~~~~~~ 312 (323)
+|+|++.+...+
T Consensus 81 ~V~~a~~~~~~~ 92 (98)
T 2cpf_A 81 EVRISERATKPA 92 (98)
T ss_dssp EEECSSCSSCCC
T ss_pred EEEEccCCCCCC
Confidence 999998775443
No 82
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=126.48 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=70.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceecc--CCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKE--KLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g--~~g~~l~V~~a 305 (323)
..++|||+|||+++|+++|+++|++||.|+.|+|..+ |||||+|.+.++|. +..|||..|.+ .+++.|+|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 3788999999999999999999999999999999875 89999999999999 88999999943 01178999999
Q ss_pred Ccccccc
Q 020632 306 QWRLRSW 312 (323)
Q Consensus 306 k~~~~~~ 312 (323)
+.+...+
T Consensus 91 ~~~~~~~ 97 (108)
T 1x4c_A 91 GPRSPSY 97 (108)
T ss_dssp SCCSCCC
T ss_pred CCCCCCC
Confidence 8875443
No 83
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-17 Score=122.91 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34599999999999999999999999999999988764 56788999999999999999999998 9999999999
Q ss_pred cCCCc
Q 020632 140 KSNSR 144 (323)
Q Consensus 140 ~~~~~ 144 (323)
+.+..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 76543
No 84
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=4.6e-18 Score=124.49 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=67.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEE
Confidence 37789999999999999999999999999999997643 3689999999999999 88999999966 999999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
|++.+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99765
No 85
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.5e-18 Score=128.82 Aligned_cols=76 Identities=8% Similarity=0.108 Sum_probs=67.0
Q ss_pred CCCcCeEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCC--ceeccCCCCceEE
Q 020632 228 VTPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFS--LLFKEKLSDGISS 302 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG--~~l~g~~g~~l~V 302 (323)
..++++|||+||+++ +|+++|+++|++||.|.+|+|++ .+|||||+|++.++|. +..||+ ..|.| +.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G---r~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQG---RCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS---SCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEE
Confidence 446889999999998 99999999999999999999986 3599999999999999 887764 55755 99999
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
+||+.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999765
No 86
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=126.54 Aligned_cols=80 Identities=20% Similarity=0.135 Sum_probs=71.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG---RQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS---CCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 47899999999999999999999999999999997643 4789999999999999 88999999966 999999
Q ss_pred EcCcccccc
Q 020632 304 WDQWRLRSW 312 (323)
Q Consensus 304 ~ak~~~~~~ 312 (323)
|++.+...+
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 998775443
No 87
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=4.4e-17 Score=130.15 Aligned_cols=80 Identities=29% Similarity=0.404 Sum_probs=71.0
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
....++|||+|||.++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345599999999999999999999999999988887654 45678999999999999999999998 999999999
Q ss_pred ccCCCc
Q 020632 139 AKSNSR 144 (323)
Q Consensus 139 a~~~~~ 144 (323)
++.+..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976543
No 88
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=123.76 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=65.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~ 141 (323)
.++|||+|||++++|++|+++|++||.|..+.|.. ++|||||+|.+.++|++|++.|+ .|+.|+|+|++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 39999999999999999999999999999888763 47899999999999999999875 799999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 91 ~~~ 93 (104)
T 1wex_A 91 KRI 93 (104)
T ss_dssp SSC
T ss_pred ccc
Confidence 543
No 89
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=125.11 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=71.7
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.+.++|||+|||+++++++|+++|+.||.|..+.|..+++.++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 3459999999999999999999999999999888776666788999999999999999999998 999999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 93 ~~~ 95 (103)
T 2d9p_A 93 KEE 95 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=2.5e-18 Score=136.75 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=69.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.| +.|+|+|
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~V~~ 123 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRVQM 123 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS---SCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEE
Confidence 678999999999999999999999999999999653 35789999999999999 88999999966 9999999
Q ss_pred cCcccc
Q 020632 305 DQWRLR 310 (323)
Q Consensus 305 ak~~~~ 310 (323)
++.+..
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987643
No 91
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=7.6e-18 Score=125.49 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=69.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 89 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG---RPINV 89 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC---CEEEE
Confidence 3457899999999999999999999999999999997643 3679999999999999 88899999966 99999
Q ss_pred EEcCc
Q 020632 303 NWDQW 307 (323)
Q Consensus 303 ~~ak~ 307 (323)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99975
No 92
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=1.2e-17 Score=126.40 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=69.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
+.++|||+|||.++|+++|+++|++||.|..|++.+ +||||+|.+.++|. +..|||..|.+ +.|+|+|++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEG---ENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETT---EEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCC---CEEEEEEcCC
Confidence 478899999999999999999999999999999984 79999999999999 88899999966 9999999987
Q ss_pred cccccc
Q 020632 308 RLRSWI 313 (323)
Q Consensus 308 ~~~~~~ 313 (323)
+..+++
T Consensus 83 ~~~~~~ 88 (103)
T 2dgu_A 83 PDQKRK 88 (103)
T ss_dssp CCCCCC
T ss_pred Ccccch
Confidence 754433
No 93
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=125.01 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=69.0
Q ss_pred cCeEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEecCC-CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 231 CATLFVANLGPTCTEQELT----QVFSKCPGFLKLKIQSTY-GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~----~~F~~fG~i~~v~i~~~~-~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.++|||+|||+++|+++|+ ++|++||.|.+|++..+. .++||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g---r~l~V~ 85 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS---KKILVS 85 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT---EEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 6789999999999999999 999999999999997543 2689999999999999 89999999966 999999
Q ss_pred EcCccc
Q 020632 304 WDQWRL 309 (323)
Q Consensus 304 ~ak~~~ 309 (323)
||+.+.
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997663
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.8e-18 Score=128.17 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=70.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..++|||+|||+++|+++|+++|++||.|.+|++..+ .++|||||+|.+.++|. ...+||..|.| +.|+|.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~g---r~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE---TDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTT---TTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECC---EEEEEEEc
Confidence 4788999999999999999999999999999999763 35799999999999999 44499999966 99999998
Q ss_pred Cccccccc
Q 020632 306 QWRLRSWI 313 (323)
Q Consensus 306 k~~~~~~~ 313 (323)
+.-...++
T Consensus 87 ~~~~~~k~ 94 (103)
T 1s79_A 87 DDYFAKKN 94 (103)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 77544433
No 95
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=128.24 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=71.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
..++|||+||+.++|+++|+++|++||.|..|++..+ +|||||+|.+.++|. +..|||..|.| +.|+|+|++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~ 98 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG---HVVKCYWGKE 98 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT---EECEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEEecCC
Confidence 4789999999999999999999999999999999985 599999999999999 88999999966 9999999988
Q ss_pred cccccc
Q 020632 308 RLRSWI 313 (323)
Q Consensus 308 ~~~~~~ 313 (323)
+...++
T Consensus 99 ~~~~~~ 104 (109)
T 1x4g_A 99 SPDMTS 104 (109)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 755443
No 96
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=123.04 Aligned_cols=75 Identities=28% Similarity=0.369 Sum_probs=68.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
+.++|||+|||.++|+++|+++|++||.|..|++.+ +||||+|.+.++|. +..|||..|.+ +.|+|+|++.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQG---KRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETT---EEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEEEccC
Confidence 478999999999999999999999999999999985 69999999999999 88999999966 9999999987
Q ss_pred cccc
Q 020632 308 RLRS 311 (323)
Q Consensus 308 ~~~~ 311 (323)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7443
No 97
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=123.15 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=68.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG---QEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC---eEEEEE
Confidence 6789999999999999999999999999999996543 5799999999999999 88899999966 999999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
+++.+
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99665
No 98
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=128.66 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=70.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
..++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.| +.|+|+|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 82 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG---KAIKVEQ 82 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS---SBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEE
Confidence 47889999999999999999999999999999997643 5689999999999999 88999999966 9999999
Q ss_pred cCcccc
Q 020632 305 DQWRLR 310 (323)
Q Consensus 305 ak~~~~ 310 (323)
++.+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987643
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=126.56 Aligned_cols=81 Identities=20% Similarity=0.111 Sum_probs=68.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..+.++|||+|||.++|+++|+++|++||.|..++...+..+|||||+|.+.++|. +..|||..|.+ +.|+|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG---RAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT---EEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC---eEEEEEEc
Confidence 34588999999999999999999999999884333333456799999999999999 88899999966 99999999
Q ss_pred Cccccc
Q 020632 306 QWRLRS 311 (323)
Q Consensus 306 k~~~~~ 311 (323)
+.+.+.
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 877443
No 100
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-17 Score=123.83 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=70.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+|||+++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 3499999999999999999999999999999988764 56788999999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 94 ~~~~ 97 (105)
T 1x5u_A 94 AHNK 97 (105)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 6543
No 101
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=121.44 Aligned_cols=73 Identities=25% Similarity=0.424 Sum_probs=67.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
.++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+||+
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 399999999999999999999999999999888764 46688999999999999999999998 99999999985
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=127.95 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=70.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
....++|||+||+.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 3457899999999999999999999999999999997543 4799999999999999 88899999966 999999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
|++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99765
No 103
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=126.36 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=71.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT---EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 4788999999999999999999999999999999654 35789999999999999 88999999966 999999
Q ss_pred EcCccccc
Q 020632 304 WDQWRLRS 311 (323)
Q Consensus 304 ~ak~~~~~ 311 (323)
|++.+..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99877444
No 104
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=125.23 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC-----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST-----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~-----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.+.++|||+|||.++|+++|+++|+.|| |..|+|+.+ ..+|||||+|.+.++|. + .|||..|.+ +.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---KRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT---EECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---cEEE
Confidence 3478999999999999999999999999 999999754 34789999999999999 7 999999966 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+..+
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999877444
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=123.83 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=65.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~ 141 (323)
.++|||+|||+++++++|+++|++||.|..+.|.. ++|||||+|.+.++|++|++.++ .|+.|+|+|++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK----GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 49999999999999999999999999999888763 38999999999999999999764 899999999976
Q ss_pred CC
Q 020632 142 NS 143 (323)
Q Consensus 142 ~~ 143 (323)
+.
T Consensus 91 ~~ 92 (101)
T 2cq1_A 91 KE 92 (101)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 106
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.3e-18 Score=127.46 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=68.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
..++|||+||+.++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|. +..|||..|.| +.|+|+|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQG---RNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETT---EECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEeccC
Confidence 368899999999999999999999999999999984 4599999999999999 88999999966 9999999976
Q ss_pred c
Q 020632 308 R 308 (323)
Q Consensus 308 ~ 308 (323)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.7e-17 Score=121.17 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=69.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 399999999999999999999999999998887764 46789999999999999999999998 999999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 85 ~~~ 87 (95)
T 2dnz_A 85 RLD 87 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 108
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.3e-17 Score=121.03 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=67.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
.+|||+|||.++|+++|+++|++||.|..+++..+. ++|||||+|.+.++|. +..|||..|.| +.|+|+|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG---RPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC---cEEEEEec
Confidence 479999999999999999999999999999997543 3689999999999999 88899999966 99999999
Q ss_pred Ccc
Q 020632 306 QWR 308 (323)
Q Consensus 306 k~~ 308 (323)
+.+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 765
No 109
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.1e-17 Score=123.94 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=70.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC--CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~--~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG---REIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT---BCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEc
Confidence 47899999999999999999999999999999997632 4689999999999999 88899999966 99999999
Q ss_pred Ccccc
Q 020632 306 QWRLR 310 (323)
Q Consensus 306 k~~~~ 310 (323)
+.+..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 77643
No 110
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-17 Score=123.00 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKC--PGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~f--G~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.+.++|||+|||.++|+++|+++|++| |.|..|++.+ |||||+|.+.++|. +..|||..|.+ +.|+|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG---SPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT---EEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC---cEEEEEE
Confidence 357899999999999999999999999 9999998764 89999999999999 88899999966 9999999
Q ss_pred cCccccc
Q 020632 305 DQWRLRS 311 (323)
Q Consensus 305 ak~~~~~ 311 (323)
++.+.+.
T Consensus 86 a~~~~~~ 92 (99)
T 2cpd_A 86 AKPVDKD 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9877443
No 111
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=1.6e-17 Score=123.00 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=70.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
+.++|||+|||.++++++|+++|++||.|..+.|..+++.++|||||+|.+.++|++|++.|+ .|+.|+|++++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 349999999999999999999999999999988877777789999999999999999999998 9999999999764
Q ss_pred C
Q 020632 143 S 143 (323)
Q Consensus 143 ~ 143 (323)
.
T Consensus 87 ~ 87 (92)
T 2dgv_A 87 S 87 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 112
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.4e-18 Score=125.23 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=71.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKL-KIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v-~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
++++|||+|||.++|+++|+++|++||.|..| ++..+ ..+|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN---RPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT---EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC---EEEEE
Confidence 37899999999999999999999999999999 88654 24789999999999999 88899999966 99999
Q ss_pred EEcCcccccc
Q 020632 303 NWDQWRLRSW 312 (323)
Q Consensus 303 ~~ak~~~~~~ 312 (323)
+|++.+..+.
T Consensus 81 ~~a~~~~~~~ 90 (96)
T 1x5t_A 81 SYAFKKDSKG 90 (96)
T ss_dssp EESCCCCCCC
T ss_pred EEecccCCCC
Confidence 9998775443
No 113
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=122.49 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=68.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
+.++|||+|||.++|+++|+++|++||.|..|++.+ +||||+|.+.++|. +..|||..|.+ +.|+|+|++.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKG---KRINVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEECCC
Confidence 478899999999999999999999999999999985 69999999999999 88999999966 9999999987
Q ss_pred ccc
Q 020632 308 RLR 310 (323)
Q Consensus 308 ~~~ 310 (323)
+..
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 114
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-17 Score=124.20 Aligned_cols=77 Identities=25% Similarity=0.547 Sum_probs=69.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||.++++++|+++|++||.|..+.|... +.++|||||+|.+.++|++|++.|+ .|+.|+|+|++.+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 3499999999999999999999999999999988654 4578999999999999999999998 9999999999765
Q ss_pred Cc
Q 020632 143 SR 144 (323)
Q Consensus 143 ~~ 144 (323)
..
T Consensus 100 ~~ 101 (109)
T 1x4a_A 100 RG 101 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 115
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=126.77 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=71.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCc
Q 020632 226 KNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDG 299 (323)
Q Consensus 226 ~~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~ 299 (323)
....+.++|||+|||.++|+++|+++|++||.|+.|+|..+ ..+|||||+|.+.++|. +..||+ .|.+ +.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g---~~ 87 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG---RK 87 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT---EE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC---EE
Confidence 33446889999999999999999999999999999999764 35789999999999999 888998 7855 99
Q ss_pred eEEEEcCcccccc
Q 020632 300 ISSNWDQWRLRSW 312 (323)
Q Consensus 300 l~V~~ak~~~~~~ 312 (323)
|+|+|++.+.+.+
T Consensus 88 l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 88 ANVNLAYLGAKPR 100 (116)
T ss_dssp CEEEESTTTCCCC
T ss_pred EEEEEcccCCCcc
Confidence 9999997764443
No 116
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.5e-17 Score=121.80 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=69.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++ ++ .|+.|+|++++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 3499999999999999999999999999999888764 46689999999999999999998 77 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 88 ~~~~ 91 (99)
T 2dgs_A 88 PRDS 91 (99)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6543
No 117
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=124.35 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=68.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEecCC----CCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~--------v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
++.++|||+||+.++|+++|+++|++||.|.. |++..+. ++|||||+|.+.++|. +..|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35889999999999999999999999999999 9997643 3689999999999999 88999999966
Q ss_pred CCCCceEEEEcC
Q 020632 295 KLSDGISSNWDQ 306 (323)
Q Consensus 295 ~~g~~l~V~~ak 306 (323)
+.|+|+||+
T Consensus 91 ---~~l~V~~A~ 99 (99)
T 2la6_A 91 ---NPIKVSFAT 99 (99)
T ss_dssp ---SBCEEEECC
T ss_pred ---cEEEEEecC
Confidence 999999985
No 118
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-17 Score=122.73 Aligned_cols=77 Identities=17% Similarity=0.357 Sum_probs=69.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 3499999999999999999999999999988887654 45678999999999999999999998 999999999976
Q ss_pred CC
Q 020632 142 NS 143 (323)
Q Consensus 142 ~~ 143 (323)
+.
T Consensus 96 ~~ 97 (100)
T 2do4_A 96 GP 97 (100)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 119
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=6.3e-17 Score=125.52 Aligned_cols=75 Identities=28% Similarity=0.358 Sum_probs=67.7
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+.++|||+|||+++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34599999999999999999999999999999888654 46789999999999999999999998 9999999987
Q ss_pred c
Q 020632 140 K 140 (323)
Q Consensus 140 ~ 140 (323)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 120
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=2.9e-17 Score=124.29 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=68.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.+.++|||+|||.++|+++|+++|++|| |..|+++.+. .+|||||+|.+.++|. + .|||..|.+ +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V 87 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD---RSLRV 87 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT---EECEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC---eEEEE
Confidence 3578999999999999999999999996 9999997644 3689999999999999 6 999999966 99999
Q ss_pred EEcCccccc
Q 020632 303 NWDQWRLRS 311 (323)
Q Consensus 303 ~~ak~~~~~ 311 (323)
+|++.+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876443
No 121
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=127.61 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=72.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEecC----CCCCeEEEEecCchhhH--HHhhCCcee
Q 020632 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFL--------KLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLF 292 (323)
Q Consensus 227 ~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~--------~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l 292 (323)
+..+.++|||+|||.++|+++|+++|++||.|. .|+|..+ ..+|||||+|.+.++|. +..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344688999999999999999999999999999 6888764 24789999999999999 888999999
Q ss_pred ccCCCCceEEEEcCccccc
Q 020632 293 KEKLSDGISSNWDQWRLRS 311 (323)
Q Consensus 293 ~g~~g~~l~V~~ak~~~~~ 311 (323)
.+ +.|+|+|++.+...
T Consensus 91 ~g---~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QG---SKLKVSLARKKPPM 106 (113)
T ss_dssp TT---EECEEECSSCCCCS
T ss_pred CC---CEEEEEECCCCCCC
Confidence 66 99999999877444
No 122
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=126.32 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=70.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.++.++|||+||+.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.| +.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~ 99 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG---RPMK 99 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS---SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEE
Confidence 3457899999999999999999999999999999997543 3689999999999999 88999999966 9999
Q ss_pred EEEcCcc
Q 020632 302 SNWDQWR 308 (323)
Q Consensus 302 V~~ak~~ 308 (323)
|+|++.+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999765
No 123
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=121.94 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=67.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|++.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 499999999999999999999999999998887654 56678999999999999999999998 999999999975
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
+
T Consensus 86 k 86 (87)
T 3bs9_A 86 K 86 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 124
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.4e-17 Score=127.53 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.| +.|+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V 100 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQV 100 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---cEEEE
Confidence 357899999999999999999999999999999997543 4789999999999999 88899999966 99999
Q ss_pred EEcCcccc
Q 020632 303 NWDQWRLR 310 (323)
Q Consensus 303 ~~ak~~~~ 310 (323)
+|++.+..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99977643
No 125
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-17 Score=125.10 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCcCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 229 TPCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 229 ~~~~tLfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
++.++|||+|||+ ++|+++|+++|++||.|..|++. +|||||+|.+.++|. +..|||..|.| +.|+|+|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG---KKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT---TTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEEEEc
Confidence 4588999999998 99999999999999999999996 489999999999999 88899999976 99999999
Q ss_pred Cccccccc
Q 020632 306 QWRLRSWI 313 (323)
Q Consensus 306 k~~~~~~~ 313 (323)
+.+.+.+.
T Consensus 81 ~~~~~~~~ 88 (96)
T 2kvi_A 81 SSNARPQF 88 (96)
T ss_dssp ECCCC---
T ss_pred CcCCCCCC
Confidence 87654443
No 126
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=123.63 Aligned_cols=78 Identities=28% Similarity=0.446 Sum_probs=70.7
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3499999999999999999999999999999988764 56688999999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 91 ~~~~ 94 (102)
T 1x5s_A 91 KSSD 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6554
No 127
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=2.7e-17 Score=125.90 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=69.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (323)
.+.++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.++ .|+.|+|.++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 34599999999999999999999999999999988765 46789999999999999999999988 99999999997
Q ss_pred CCC
Q 020632 141 SNS 143 (323)
Q Consensus 141 ~~~ 143 (323)
.+.
T Consensus 103 ~~~ 105 (109)
T 2rs2_A 103 PRR 105 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=2e-17 Score=123.84 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCcCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 229 TPCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 229 ~~~~tLfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
+++++|||+||+. ++|+++|+++|++||.|..|++. +|||||+|.+.++|. +..|||..|.| +.|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a 92 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG---KKLILEVS 92 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT---EECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEec
Confidence 3588999999998 99999999999999999999985 499999999999999 88899999966 99999999
Q ss_pred Cccc
Q 020632 306 QWRL 309 (323)
Q Consensus 306 k~~~ 309 (323)
+.+.
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 129
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=126.33 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=69.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.++++|||+||+.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +..|||..|.| +.|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS---SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC---cEEEE
Confidence 357889999999999999999999999999999997643 3689999999999999 88899999966 99999
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
+|++.+
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 999765
No 130
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=125.57 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=69.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.+.++|||+||+.++|+++|+++|++||.|+.|+|..+. .+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 89 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD---RPMHVK 89 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC---CEEEEE
Confidence 457899999999999999999999999999999997643 2579999999999999 88899999966 999999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
|++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 99755
No 131
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=127.04 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=65.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~ 141 (323)
.++|||+|||++++|++|+++|++||.|..+.|.. ++|||||+|.+.++|++|++.++ .|+.|+|+|++.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 49999999999999999999999999999988774 37899999999999999999775 899999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 107 k~~ 109 (119)
T 2ad9_A 107 KEL 109 (119)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=127.22 Aligned_cols=80 Identities=16% Similarity=0.310 Sum_probs=71.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCe----EEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGF----LKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i----~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.++++|||+|||.++|+++|+++|++||.| ..+++..+..+|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG---KILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS---CBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEE
Confidence 357899999999999999999999999998 6778787778899999999999999 88999999966 99999
Q ss_pred EEcCccccc
Q 020632 303 NWDQWRLRS 311 (323)
Q Consensus 303 ~~ak~~~~~ 311 (323)
+|++.+..+
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999877433
No 133
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=1.9e-17 Score=120.58 Aligned_cols=74 Identities=30% Similarity=0.457 Sum_probs=67.4
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+||+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4499999999999999999999999999998887653 55678999999999999999999998 99999999985
No 134
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=1.8e-17 Score=122.06 Aligned_cols=75 Identities=19% Similarity=0.124 Sum_probs=63.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhHHHhhCCceeccCCCCceEEEEcCcc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCVCHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
+..+|||+|||+++||++|+++|++||.|.+|+|+.+ ++|||||+|++.++|. .|+|..+.+ +|+.|+|.+|+.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~--~~~~~~~~~-~g~~v~v~~a~~k 84 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ--SLCGEDLII-KGISVHISNAEPK 84 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH--HHTTCEEEE-TTEEEEEEECC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH--HHcCCCccc-CCEEEEEEEcCCC
Confidence 4788999999999999999999999999999999874 6799999999999997 456776654 4588888888755
No 135
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.9e-17 Score=124.59 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=71.6
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEc
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (323)
....++|||+|||+++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++||+.++ .|+.|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 345599999999999999999999999999999988764 46789999999999999999999998 9999999999
Q ss_pred cCCCc
Q 020632 140 KSNSR 144 (323)
Q Consensus 140 ~~~~~ 144 (323)
+....
T Consensus 94 ~~~~~ 98 (116)
T 2cqd_A 94 YLGAK 98 (116)
T ss_dssp TTTCC
T ss_pred ccCCC
Confidence 76443
No 136
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=9e-17 Score=124.34 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+..++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34599999999999999999999999999988887654 56788999999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 137
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-17 Score=123.00 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=69.8
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 3499999999999999999999999999999988764 46688999999999999999999998 99999999997
Q ss_pred CCC
Q 020632 141 SNS 143 (323)
Q Consensus 141 ~~~ 143 (323)
...
T Consensus 92 ~~~ 94 (103)
T 2dnm_A 92 YGR 94 (103)
T ss_dssp SCC
T ss_pred cCC
Confidence 643
No 138
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=122.68 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=65.8
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceE--------EEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeE
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYES--------SHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~--------~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l 134 (323)
++|||+|||+++++++|+++|++||.|.. +.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 93 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 93 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 99999999999999999999999999987 766543 56778999999999999999999998 99999
Q ss_pred EEEEcc
Q 020632 135 YIDLAK 140 (323)
Q Consensus 135 ~v~~a~ 140 (323)
+|++|+
T Consensus 94 ~V~~A~ 99 (99)
T 2la6_A 94 KVSFAT 99 (99)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999874
No 139
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=5.6e-17 Score=125.19 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=71.1
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++||+.|+ .|+.|+|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34599999999999999999999999999998887654 56678999999999999999999998 8999999999
Q ss_pred cCCCc
Q 020632 140 KSNSR 144 (323)
Q Consensus 140 ~~~~~ 144 (323)
+.+..
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 76554
No 140
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.1e-17 Score=137.60 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=69.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|..|+|..+. .+|||||+|.+.++|. +..|||..|.| +.|+|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 47889999999999999999999999999999998643 3689999999999999 88999999966 999999
Q ss_pred EcCcccccc
Q 020632 304 WDQWRLRSW 312 (323)
Q Consensus 304 ~ak~~~~~~ 312 (323)
|++.+..++
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 997764443
No 141
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=124.97 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=66.1
Q ss_pred cceEEEeCCCCC-CchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~-~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (323)
.++|||+|||++ +++++|+++|++||.|..+.|. +++|||||+|.+.++|++|++.|+ .|+.|+|+|++
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 499999999998 9999999999999999999886 457899999999999999999874 89999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6544
No 142
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=127.73 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=69.6
Q ss_pred CcCeEEEcCCCCCCCHHHHH---HHhhcCCCeEEEEEecCC-------CCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 230 PCATLFVANLGPTCTEQELT---QVFSKCPGFLKLKIQSTY-------GPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~---~~F~~fG~i~~v~i~~~~-------~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
..++|||+|||+++|+++|+ ++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--- 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG--- 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC---
Confidence 47789999999999999999 999999999999997543 3479999999999999 99999999965
Q ss_pred CceEEEEcCccc
Q 020632 298 DGISSNWDQWRL 309 (323)
Q Consensus 298 ~~l~V~~ak~~~ 309 (323)
+.|+|+||+.+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998774
No 143
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=126.19 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCccc
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWRL 309 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~~ 309 (323)
++|||+|||.++|+++|+++|++||.|..|++..+ ++|||||+|.+.++|. +..|||..|.| +.|+|+|++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG---SRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS---CCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC---cEEEEEEccCCC
Confidence 37999999999999999999999999999999886 6799999999999999 88899999966 999999998875
Q ss_pred cc
Q 020632 310 RS 311 (323)
Q Consensus 310 ~~ 311 (323)
+.
T Consensus 77 ~~ 78 (101)
T 2hvz_A 77 RR 78 (101)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=128.33 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=69.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
..++|||+||+.++|+++|+++|++||.|..|+|+.+ ..+|||||+|.+.++|. + .|||..|.| +.|+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG---VPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT---EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC---eEEEEE
Confidence 4679999999999999999999999999999999753 35789999999999999 7 999999966 999999
Q ss_pred EcCcccc
Q 020632 304 WDQWRLR 310 (323)
Q Consensus 304 ~ak~~~~ 310 (323)
|++.+..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9976643
No 145
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=123.71 Aligned_cols=80 Identities=28% Similarity=0.404 Sum_probs=71.3
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
..+.++|||+|||.++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 344599999999999999999999999999998887654 56678999999999999999999998 999999999
Q ss_pred ccCCCc
Q 020632 139 AKSNSR 144 (323)
Q Consensus 139 a~~~~~ 144 (323)
++.+..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976543
No 146
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=121.78 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=69.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEE-EeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESS-HLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~-~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
.++|||+|||.++++++|+++|+.||.|..+ .|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 4999999999999999999999999998877 66653 56789999999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 85 ~~~~ 88 (96)
T 1x5t_A 85 KKDS 88 (96)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 6543
No 147
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.6e-17 Score=122.41 Aligned_cols=78 Identities=28% Similarity=0.415 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 3499999999999999999999999999998887654 46689999999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 91 ~~~~ 94 (102)
T 2cqb_A 91 PMRI 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 148
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=2.4e-17 Score=130.07 Aligned_cols=78 Identities=22% Similarity=0.165 Sum_probs=70.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.| +.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g---~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS---SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 345889999999999999999999999999999999754 45789999999999999 88899999966 9999
Q ss_pred EEEcCcc
Q 020632 302 SNWDQWR 308 (323)
Q Consensus 302 V~~ak~~ 308 (323)
|+|++.+
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9999765
No 149
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.2e-16 Score=124.42 Aligned_cols=90 Identities=11% Similarity=-0.011 Sum_probs=73.0
Q ss_pred CcCe--EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCe-EEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 230 PCAT--LFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPV-AFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 230 ~~~t--LfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~-aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
++++ |||+||++.+|+++|+++|++||.|++|+|..+ .|| |||+|++.++|. +.+|||..|.+ .++.|+|+|
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g-~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYA-GCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBT-TBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCeEEEEEE
Confidence 4555 579999999999999999999999999999864 386 999999999999 99999999976 236899999
Q ss_pred cCccc-cccccCcceeeec
Q 020632 305 DQWRL-RSWIQSFKCVEFA 322 (323)
Q Consensus 305 ak~~~-~~~~~~~~~~~~~ 322 (323)
|+.+. .-+.++.+...|.
T Consensus 99 Ak~~~l~v~~n~~~srDyt 117 (124)
T 2e5i_A 99 ARPTRLNVIRNDNDSWDYT 117 (124)
T ss_dssp CSCSCCCCSSCSSSEEESS
T ss_pred ecCCcceeecCCCCCCCCC
Confidence 98773 2233444554443
No 150
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=8.7e-17 Score=128.40 Aligned_cols=81 Identities=17% Similarity=0.129 Sum_probs=72.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
....++|||+||+.++|+++|+++|+.||.|++|+++.+. ++|||||+|.+.++|. +..|||..|.+ +.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN---KRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS---CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEEE
Confidence 3457899999999999999999999999999999997643 3689999999999999 88899999966 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+..+
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999887544
No 151
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=8.2e-17 Score=122.17 Aligned_cols=78 Identities=26% Similarity=0.375 Sum_probs=69.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CC---CeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KG---STLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g---~~l~v~~ 138 (323)
+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .| +.|+|++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 3499999999999999999999999999988887654 55678999999999999999999998 55 9999999
Q ss_pred ccCCCc
Q 020632 139 AKSNSR 144 (323)
Q Consensus 139 a~~~~~ 144 (323)
++.+..
T Consensus 94 a~~~~~ 99 (105)
T 2dnh_A 94 ADTDKE 99 (105)
T ss_dssp SCSSCC
T ss_pred CccCcc
Confidence 976543
No 152
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=135.12 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=68.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCC--CceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G--~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
+.++|||+|||+++++++|+++|+.|| .|..+.|..+ ++.++|||||+|.+.++|++||+.|+ .|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 459999999999999999999999999 8888877644 67789999999999999999999998 999999999
Q ss_pred ccCC
Q 020632 139 AKSN 142 (323)
Q Consensus 139 a~~~ 142 (323)
+..+
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9654
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=4.3e-17 Score=124.91 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=68.0
Q ss_pred CcCeEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 230 PCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 230 ~~~tLfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
..++|||+||+.+ +|+++|+++|++||.|..|++ .+|||||+|.+.++|. +..|||..|.+ +.|+|+|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG---QTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT---EECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEECC
Confidence 4689999999999 999999999999999999999 3499999999999999 88999999966 999999998
Q ss_pred ccccc
Q 020632 307 WRLRS 311 (323)
Q Consensus 307 ~~~~~ 311 (323)
.+...
T Consensus 99 ~~~~~ 103 (110)
T 1wf1_A 99 EPKPD 103 (110)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 65333
No 154
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=121.30 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 3499999999999999999999999999988887654 45678999999999999999999998 99999999986
Q ss_pred C
Q 020632 141 S 141 (323)
Q Consensus 141 ~ 141 (323)
.
T Consensus 94 ~ 94 (95)
T 2cqc_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=5e-17 Score=121.37 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=69.6
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
++|||+|||.++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++.+
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 89999999999999999999999999999988765 46679999999999999999999998 9999999999765
Q ss_pred Cc
Q 020632 143 SR 144 (323)
Q Consensus 143 ~~ 144 (323)
..
T Consensus 83 ~~ 84 (96)
T 2x1f_A 83 DI 84 (96)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 156
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.9e-17 Score=121.46 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=68.6
Q ss_pred CcceEEEeCCCCCCchHHHH----HHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~----~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
+.++|||+|||+++++++|+ ++|++||.|..+.|..+... +|||||+|.+.++|++|++.|| .|+.|+|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34899999999999999999 99999999999998866544 8999999999999999999999 999999999
Q ss_pred ccCC
Q 020632 139 AKSN 142 (323)
Q Consensus 139 a~~~ 142 (323)
++..
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9654
No 157
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=2.6e-17 Score=129.23 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=70.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.+.++|||+||+.++|+++|+++|++||.|..|+|+.+ ..+|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 96 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPISV 96 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS---SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEE
Confidence 34789999999999999999999999999999999753 34789999999999999 88999999966 99999
Q ss_pred EEcCccccc
Q 020632 303 NWDQWRLRS 311 (323)
Q Consensus 303 ~~ak~~~~~ 311 (323)
+|++.+..+
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999766433
No 158
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=123.43 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=69.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC-----CCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-----QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~-----~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (323)
+.++|||+|||+++++++|+++|+.||.|..+.|..+. +.++|||||+|.+.++|++|++.|+ .|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34999999999999999999999999999888876542 2678999999999999999999998 99999999
Q ss_pred EccCCCc
Q 020632 138 LAKSNSR 144 (323)
Q Consensus 138 ~a~~~~~ 144 (323)
+++.+..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9976543
No 159
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=5e-17 Score=125.51 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=70.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 3499999999999999999999999999988877654 56678999999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 104 ~~~~ 107 (115)
T 2cpz_A 104 SKND 107 (115)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 6544
No 160
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=8.8e-17 Score=122.20 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC-------CCCeEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-------KGSTLYID 137 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~-------~g~~l~v~ 137 (323)
+.++|||+|||.++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 3499999999999999999999999999999988764 46789999999999999999999988 47999999
Q ss_pred EccCCCc
Q 020632 138 LAKSNSR 144 (323)
Q Consensus 138 ~a~~~~~ 144 (323)
+++.+..
T Consensus 92 ~a~~~~~ 98 (106)
T 2dgp_A 92 PADSESR 98 (106)
T ss_dssp ECCCCSC
T ss_pred ECCcccc
Confidence 9976543
No 161
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=124.74 Aligned_cols=72 Identities=29% Similarity=0.475 Sum_probs=66.2
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC---CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS---TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~---~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
++|||+|||+++++++|+++|+.|| |..+.|..+ ++.++|||||+|.+.++|++|+ .|+ .|+.|+|++++.
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 9999999999999999999999999 999988764 4678999999999999999999 788 999999999876
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
+
T Consensus 98 ~ 98 (100)
T 2j76_E 98 A 98 (100)
T ss_dssp S
T ss_pred C
Confidence 4
No 162
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=126.80 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=68.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
.++|||+|||.++|+++|+++|++||.|..|++.. .++||||+|.+.++|. +..|||..|.+ +.|+|+|++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHH---VPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSS---SBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECC---eEEEEEECCCC
Confidence 67899999999999999999999999999999875 4589999999999999 99999999966 99999999765
Q ss_pred cc
Q 020632 309 LR 310 (323)
Q Consensus 309 ~~ 310 (323)
..
T Consensus 85 ~~ 86 (111)
T 1whx_A 85 VF 86 (111)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 163
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=5.6e-17 Score=121.42 Aligned_cols=69 Identities=23% Similarity=0.489 Sum_probs=64.4
Q ss_pred ceEEEeCCCC-CCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 69 RTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 69 ~tlfV~nLp~-~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|++.|+ .|+.|+|++++.+.
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 9999999998 99999999999999999988873 7899999999999999999998 89999999997643
No 164
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.7e-17 Score=118.74 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=64.6
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..|||+||++.+||++|+++|.+||+|.++.+. .++|||||+|.+.++|++|++.|| .|++|+|++|.
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~----~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY----LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc----CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 789999999999999999999999999999886 379999999999999999999999 99999999983
No 165
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=125.83 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=72.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCce-eccCCCCceEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSK-CPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLL-FKEKLSDGISS 302 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~-fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~-l~g~~g~~l~V 302 (323)
+.++|||+||+.++|+++|+++|++ ||.|..|+|..+. ++|||||+|.+.++|. +..|||.. |.| +.|+|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---~~l~v 84 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS---KPVRL 84 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS---SCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC---EeEEE
Confidence 4788999999999999999999999 9999999997642 4689999999999999 88999999 966 99999
Q ss_pred EEcCcccccccc
Q 020632 303 NWDQWRLRSWIQ 314 (323)
Q Consensus 303 ~~ak~~~~~~~~ 314 (323)
+|++.+..+++.
T Consensus 85 ~~a~~~~~~~~~ 96 (104)
T 2dhg_A 85 SVAIPKASRVKP 96 (104)
T ss_dssp CBCCCCCSCCCC
T ss_pred EEccCCCcCCCC
Confidence 999877555443
No 166
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.5e-17 Score=124.36 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=70.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEecC-CCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 228 VTPCATLFVANLGPTCTEQELT----QVFSKCPGFLKLKIQST-YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~----~~F~~fG~i~~v~i~~~-~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
.+++++|||+|||.++|+++|+ ++|++||.|..|++... ..+|||||+|.+.++|. +..|||..|.| +.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT---EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC---cEE
Confidence 3458899999999999999999 99999999999998742 34699999999999999 88999999966 999
Q ss_pred EEEEcCccc
Q 020632 301 SSNWDQWRL 309 (323)
Q Consensus 301 ~V~~ak~~~ 309 (323)
+|+|++.+.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998763
No 167
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=123.59 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=68.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeE-EEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCc---
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFL-KLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDG--- 299 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~-~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~--- 299 (323)
+.++|||+|||.++|+++|+++|++||.|. .|++..+. .+|||||+|.+.++|. +..|||..|.+ +.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG---ATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS---CSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC---CCcce
Confidence 478999999999999999999999999999 99997643 4589999999999999 88899999966 78
Q ss_pred -eEEEEcCcc
Q 020632 300 -ISSNWDQWR 308 (323)
Q Consensus 300 -l~V~~ak~~ 308 (323)
|+|+||+..
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999999765
No 168
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=127.33 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=68.1
Q ss_pred cceEEEeCCCCCCchHHHH----HHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~----~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
+++|||+||++.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|++|++.|| .|+.|+|+|+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 3899999999999999876 7999999998887764 45689999999999999999999999 9999999999
Q ss_pred cCCCc
Q 020632 140 KSNSR 144 (323)
Q Consensus 140 ~~~~~ 144 (323)
+.+..
T Consensus 108 ~~~~~ 112 (127)
T 2a3j_A 108 ETPQS 112 (127)
T ss_dssp CCCCH
T ss_pred cCcch
Confidence 87655
No 169
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=4.8e-17 Score=117.94 Aligned_cols=74 Identities=32% Similarity=0.515 Sum_probs=67.7
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.+|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999988877644 56678999999999999999999998 9999999999764
No 170
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=131.33 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=69.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--EEEecCC----CCCeEEEEecCchhhH--HHhhCCc----eecc
Q 020632 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLK--LKIQSTY----GPPVAFVDFQVTCVCV--CHILFSL----LFKE 294 (323)
Q Consensus 227 ~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~--v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~----~l~g 294 (323)
...++++|||+||++++||++|+++|++||.|.. |+|+.+. ++|||||+|.+. +|. +..|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3346889999999999999999999999999976 8887544 579999999999 888 9999999 9966
Q ss_pred CCCCceEEEEcCcc
Q 020632 295 KLSDGISSNWDQWR 308 (323)
Q Consensus 295 ~~g~~l~V~~ak~~ 308 (323)
+.|+|+|++.+
T Consensus 98 ---r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 ---KTINVEFAKGS 108 (131)
T ss_dssp ---CCCCCEECCCS
T ss_pred ---EEEEEEECCCC
Confidence 99999999776
No 171
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=118.95 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=63.3
Q ss_pred CCcCe-EEEcCCCCCCCHHH----HHHHhhcCC-CeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 229 TPCAT-LFVANLGPTCTEQE----LTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 229 ~~~~t-LfV~nLp~~~te~~----L~~~F~~fG-~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
+++.| |||+||++++++++ |+++|++|| .|.+| . . |+|||.|.+.++|. ++.|||+.|.| |.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t-g--G~AfV~F~~~esA~~A~~~l~G~~l~g---r~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---T-G--CSAILRFINQDSAERAQKRMENEDVFG---NRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---C-T--TCEEEEESSHHHHHHHHHHHTTCCSSS---SCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---e-c--CEEEEEECCHHHHHHHHHHhcCCccCC---ceE
Confidence 35777 99999999999998 558999995 99888 2 2 99999999999999 99999999977 999
Q ss_pred EEEEcCcc
Q 020632 301 SSNWDQWR 308 (323)
Q Consensus 301 ~V~~ak~~ 308 (323)
+|+||+.+
T Consensus 77 ~v~~A~~~ 84 (96)
T 2diu_A 77 IVSFTPKN 84 (96)
T ss_dssp EEESSCCS
T ss_pred EEEecCCC
Confidence 99999776
No 172
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=5.6e-17 Score=125.21 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=70.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
++++|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +..|||..|.| +.|+|+|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN---RYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS---CBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEec
Confidence 47899999999999999999999999999999997543 4799999999999999 88899999966 999999998
Q ss_pred cccc
Q 020632 307 WRLR 310 (323)
Q Consensus 307 ~~~~ 310 (323)
.+..
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 6533
No 173
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=3.5e-17 Score=124.69 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=68.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.+.++|||+||+.++|+++|+++|++||.|+.|++..+ ..+|||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 103 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG---RPMNIQ 103 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEE
Confidence 34789999999999999999999999999999999854 34679999999999999 88899999966 999999
Q ss_pred EcCc
Q 020632 304 WDQW 307 (323)
Q Consensus 304 ~ak~ 307 (323)
|+++
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9863
No 174
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=117.88 Aligned_cols=72 Identities=22% Similarity=0.465 Sum_probs=66.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|+ .|+.|+|++++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 34999999999999999999999999999988876 5799999999999999999998 8999999999765
Q ss_pred Cc
Q 020632 143 SR 144 (323)
Q Consensus 143 ~~ 144 (323)
..
T Consensus 81 ~~ 82 (90)
T 2dnq_A 81 SK 82 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 175
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=122.45 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=68.7
Q ss_pred cceEEEeCCCCCC------chHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCC-eEEE
Q 020632 68 VRTLFVAGLPEDV------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGS-TLYI 136 (323)
Q Consensus 68 ~~tlfV~nLp~~~------~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~-~l~v 136 (323)
.++|||+|||+.+ ++++|+++|++||.|..+.|...++.++|||||+|.+.++|++|++.|| .|+ .|+|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 4899999999999 7899999999999999998886677889999999999999999999999 888 9999
Q ss_pred EEccCC
Q 020632 137 DLAKSN 142 (323)
Q Consensus 137 ~~a~~~ 142 (323)
+++...
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 998643
No 176
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=5.1e-17 Score=118.94 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=66.1
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (323)
.+.++|||+|||+++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++.++ .|+.|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34599999999999999999999999999998887654 46778999999999999999998755 9999999875
No 177
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=121.44 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=68.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
...++|||+|||.++++++|+++|++||.|..+.|..+ .+.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 34599999999999999999999999999988887654 45678999999999999999999998 99999999986
Q ss_pred C
Q 020632 141 S 141 (323)
Q Consensus 141 ~ 141 (323)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.2e-18 Score=126.56 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=65.3
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|++||.|..+.+. .++|||||+|.+.++|++|++.|+ .|+.|+|+|++.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3999999999999999999999999999998887 568999999999999999999998 999999999865
No 179
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-16 Score=120.96 Aligned_cols=78 Identities=26% Similarity=0.367 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHh-------C---CCCeE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYAL-------N---KGSTL 134 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l-------~---~g~~l 134 (323)
+.++|||+|||+++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++|++.+ . .|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 4499999999999999999999999999999988765 4568999999999999999999987 4 89999
Q ss_pred EEEEccCCCc
Q 020632 135 YIDLAKSNSR 144 (323)
Q Consensus 135 ~v~~a~~~~~ 144 (323)
+|+++..+..
T Consensus 94 ~v~~a~~~~~ 103 (111)
T 1x4h_A 94 KVDLAVTRDE 103 (111)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCcc
Confidence 9999976543
No 180
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=122.72 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=66.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEecCCCCCeEEEEecCchhhH--HHhhCC-ceeccCCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFS-LLFKEKLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG-~~l~g~~g~~l~V~~a 305 (323)
..++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|. +..||| ..|.+ +.|+|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g---~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG---KIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT---EECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC---EEEEEEEc
Confidence 3788999999999999999999999999 6666664 3489999999999999 889999 99966 99999999
Q ss_pred Cccccc
Q 020632 306 QWRLRS 311 (323)
Q Consensus 306 k~~~~~ 311 (323)
+.+..+
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 876443
No 181
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-18 Score=127.44 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=70.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
..++|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG---RALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS---SCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Confidence 46889999999999999999999999999999997543 3689999999999999 88999999966 999999
Q ss_pred EcCccccc
Q 020632 304 WDQWRLRS 311 (323)
Q Consensus 304 ~ak~~~~~ 311 (323)
|++.+..+
T Consensus 84 ~a~~~~~~ 91 (104)
T 1p1t_A 84 NAASEKNK 91 (104)
T ss_dssp ETTCTTHH
T ss_pred eCCCccch
Confidence 99877443
No 182
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=6.8e-18 Score=124.62 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=63.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCP--GFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG--~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.+|||+||++++|+++|+++|++|| .|.+|+++.+. ++|||||+|.+.++|. +..|||..|.| +.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g---r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS---CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC---EEEEEE
Confidence 4699999999999999999999999 99999997643 4689999999999999 88999999966 999999
Q ss_pred EcCccc
Q 020632 304 WDQWRL 309 (323)
Q Consensus 304 ~ak~~~ 309 (323)
+++.+.
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 997663
No 183
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.4e-17 Score=122.98 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=68.9
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 4599999999999999999999999999998887654 46678999999999999999999998 99999999997
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
.+
T Consensus 102 ~~ 103 (106)
T 1p27_B 102 VR 103 (106)
T ss_dssp ES
T ss_pred CC
Confidence 54
No 184
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=123.11 Aligned_cols=76 Identities=11% Similarity=0.019 Sum_probs=67.9
Q ss_pred CcCeEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEec--CCCCCeEEEEecCchhhH--HHhhCCceeccCCCC-
Q 020632 230 PCATLFVANLGPTC------TEQELTQVFSKCPGFLKLKIQS--TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD- 298 (323)
Q Consensus 230 ~~~tLfV~nLp~~~------te~~L~~~F~~fG~i~~v~i~~--~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~- 298 (323)
..++|||+|||..+ |+++|+++|++||.|..|++.+ +.++|||||+|.+.++|. +..|||..|.| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g---~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---QH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST---TC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC---Cc
Confidence 47889999999999 7899999999999999999973 245799999999999999 89999999965 8
Q ss_pred ceEEEEcCcc
Q 020632 299 GISSNWDQWR 308 (323)
Q Consensus 299 ~l~V~~ak~~ 308 (323)
.|+|+|++..
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999654
No 185
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=123.21 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=68.8
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++.++ .|+.|+|++++.
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 399999999999999999999999999988887654 45678999999999999999999998 999999999976
Q ss_pred CC
Q 020632 142 NS 143 (323)
Q Consensus 142 ~~ 143 (323)
+.
T Consensus 106 k~ 107 (108)
T 2jrs_A 106 RT 107 (108)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 186
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.5e-17 Score=122.75 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=67.7
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
...++|||+|||+++|+++|+++|+.||.|..|.|..+ .+.++|||||+|.+.++|++|++ ++ .|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34599999999999999999999999999998887654 46789999999999999999999 66 99999999986
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
..
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 187
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=6.4e-17 Score=123.76 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=66.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..+.++|||+||+.++|+++|+++|++||.|..|++..+ .++|||||+|.+.++|. +.. +|..|.| +.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~-~~~~l~g---~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDS---KTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS-SCEEETT---EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH-CCCcCCC---EEEE
Confidence 345788999999999999999999999999999999764 34789999999999999 555 4688865 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+..+
T Consensus 98 V~~a~~~~~~ 107 (109)
T 2rs2_A 98 PKVAFPRRAQ 107 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876444
No 188
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=5.5e-17 Score=123.93 Aligned_cols=70 Identities=26% Similarity=0.389 Sum_probs=65.3
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|+ .|+.|+|++++.+.
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 3999999999999999999999999999988877 6899999999999999999998 99999999997643
No 189
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=122.82 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccC-----CC
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEK-----LS 297 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~-----~g 297 (323)
....++|||+|||.++|+++|+++|++||.|..|+|..+. ++|||||+|.+.++|. +..|||..|.+. .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3457889999999999999999999999999999997643 3679999999999999 889999999432 23
Q ss_pred CceEEEEcCccc
Q 020632 298 DGISSNWDQWRL 309 (323)
Q Consensus 298 ~~l~V~~ak~~~ 309 (323)
+.|+|.|++.+.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999998653
No 190
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=120.62 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=67.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC---CCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST---QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~---~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
.++|||+|||+++++++|+++|+.|| |..|.|..+. +.++|||||+|.+.++|++|| .|+ .|+.|+|++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEcc
Confidence 39999999999999999999999999 9999887652 667999999999999999999 887 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 93 ~~~~ 96 (104)
T 1wi8_A 93 QAQD 96 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 191
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=124.16 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=70.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCce
Q 020632 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGI 300 (323)
Q Consensus 227 ~~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l 300 (323)
...+.++|||+|||+++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +.. ||..|.+ +.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g---~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG---RNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT---EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC---EEE
Confidence 34458899999999999999999999999999999997653 3579999999999999 555 9999966 999
Q ss_pred EEEEcCccccc
Q 020632 301 SSNWDQWRLRS 311 (323)
Q Consensus 301 ~V~~ak~~~~~ 311 (323)
+|+|++.+...
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876433
No 192
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=6.8e-17 Score=118.74 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.++|||+|||.++|+++|+++|++||.|..|++..+ .++|||||+|.+.++|. + .|||..|.| +.|+|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g---~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG---RQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT---EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC---cEEEEEE
Confidence 678999999999999999999999999999999754 34789999999999999 6 999999966 9999999
Q ss_pred cCcc
Q 020632 305 DQWR 308 (323)
Q Consensus 305 ak~~ 308 (323)
++.+
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9765
No 193
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=122.34 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=69.5
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCce--------EEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYE--------SSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KG 131 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~--------~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g 131 (323)
...++|||+|||+++++++|+++|+.||.|. .+.|..+ ++.++|||||+|.+.++|++||+.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3459999999999999999999999999988 4766654 56778999999999999999999998 99
Q ss_pred CeEEEEEccCCCc
Q 020632 132 STLYIDLAKSNSR 144 (323)
Q Consensus 132 ~~l~v~~a~~~~~ 144 (323)
+.|+|++++.+..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999976543
No 194
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=1.5e-17 Score=125.22 Aligned_cols=76 Identities=12% Similarity=0.009 Sum_probs=68.3
Q ss_pred cCeEEEcCCCC------CCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 231 CATLFVANLGP------TCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 231 ~~tLfV~nLp~------~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
.++|||+|||. ++++++|+++|++||.|.+|+|..+. ++|||||+|.+.++|. +..|||..|.|+ +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~--r 83 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK--H 83 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS--C
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC--e
Confidence 78899999999 99999999999999999999996433 5799999999999999 889999999432 8
Q ss_pred ceEEEEcCcc
Q 020632 299 GISSNWDQWR 308 (323)
Q Consensus 299 ~l~V~~ak~~ 308 (323)
.|+|++++.+
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999765
No 195
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=1.1e-16 Score=122.62 Aligned_cols=78 Identities=28% Similarity=0.377 Sum_probs=70.1
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 34599999999999999999999999999999988654 46678999999999999999999998 9999999999
Q ss_pred cCCC
Q 020632 140 KSNS 143 (323)
Q Consensus 140 ~~~~ 143 (323)
+.+.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7643
No 196
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=120.03 Aligned_cols=76 Identities=9% Similarity=0.032 Sum_probs=68.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEE-EecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLK-IQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~-i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
..++|||+|||+++|+++|+++|++||.|..|+ +..+...+.|||+|.+.++|. +..|||..|.| +.|+|+|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN---FTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcC
Confidence 367899999999999999999999999999995 776665567999999999999 88999999966 999999997
Q ss_pred cc
Q 020632 307 WR 308 (323)
Q Consensus 307 ~~ 308 (323)
.+
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 66
No 197
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=1.7e-17 Score=122.47 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=63.0
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCC--CceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G--~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
.+|||+|||+++++++|+++|+.|| .|..+.+..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 6899999999999999999999999 8888876654 66789999999999999999999998 99999999886
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 198
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=3.5e-17 Score=123.24 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=69.3
Q ss_pred CCcceEEEeCCCC------CCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CC-C
Q 020632 66 DEVRTLFVAGLPE------DVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KG-S 132 (323)
Q Consensus 66 ~~~~tlfV~nLp~------~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g-~ 132 (323)
...++|||+|||+ ++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|| .| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3459999999999 9999999999999999999887654 46789999999999999999999999 77 9
Q ss_pred eEEEEEccCC
Q 020632 133 TLYIDLAKSN 142 (323)
Q Consensus 133 ~l~v~~a~~~ 142 (323)
.|+|.++...
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998653
No 199
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=124.86 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=67.5
Q ss_pred CcCeEEE--cCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCcee---ccCCCCceEE
Q 020632 230 PCATLFV--ANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLF---KEKLSDGISS 302 (323)
Q Consensus 230 ~~~tLfV--~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l---~g~~g~~l~V 302 (323)
++++||| +||++++|+++|+++|++||.|.+|.+..+ +|||||+|++.++|. +.+|||+.| .+ .|+.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg-~g~~l~v 100 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLG-QKITLYL 100 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTS-CEEECEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccC-CCcEEEE
Confidence 4788999 779999999999999999999999998763 599999999999999 999999988 11 2489999
Q ss_pred EEcCccc
Q 020632 303 NWDQWRL 309 (323)
Q Consensus 303 ~~ak~~~ 309 (323)
.|+++..
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 9997653
No 200
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=9.2e-17 Score=126.64 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=69.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++||+.|+ .|+.|+|+|++
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3499999999999999999999999999998887654 46789999999999999999999998 99999999987
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
.+
T Consensus 125 ~~ 126 (129)
T 2kxn_B 125 TK 126 (129)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 201
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=1.1e-16 Score=117.25 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=65.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~ 303 (323)
.+.++|||+|||.++|+++|+++|++||.|..|+++.+. ++|||||+|.+.++|. ...++|..|.| +.|+|+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g---~~i~v~ 85 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG---RVIDPK 85 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETT---EEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECC---EEEEEE
Confidence 357899999999999999999999999999999997543 3689999999999999 55779999955 999999
Q ss_pred Ec
Q 020632 304 WD 305 (323)
Q Consensus 304 ~a 305 (323)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 202
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=119.21 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=66.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.++|||+|||.++++++|+++|++||.|..+.+. .++|||||+|.+.++|++|++.|+ .|+.|+|++++.+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH----KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE----TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4999999999999999999999999999998887 347899999999999999999998 99999999997643
No 203
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=122.96 Aligned_cols=76 Identities=12% Similarity=-0.064 Sum_probs=67.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
..++|||+|||.++|+++|+++|++||.|..++++.+ ..+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~ 90 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKLV 90 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEEE
Confidence 4688999999999999999999999999987666543 23689999999999999 88999999966 999999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
|++.+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 99765
No 204
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-16 Score=117.73 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=67.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
+.++|||+|| ++|+++|+++|++||.|..|++. .++|||||+|.+.++|. +..|||..|.+ +.|+|+|++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIARK 86 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT---EEEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEECCC
Confidence 4789999996 99999999999999999999996 45599999999999999 88999999966 9999999987
Q ss_pred cccc
Q 020632 308 RLRS 311 (323)
Q Consensus 308 ~~~~ 311 (323)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7443
No 205
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-17 Score=123.15 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=68.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEe-cC----CCCCeEEEEecCchhhH--HHhhC--CceeccCCCCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQ-ST----YGPPVAFVDFQVTCVCV--CHILF--SLLFKEKLSDG 299 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~-~~----~~~g~aFV~F~~~~~A~--~~~ln--G~~l~g~~g~~ 299 (323)
+.++|||+|||.++|+++|+++|++||. |..|++. .+ .++|||||+|.+.++|. +..|| +..|.| +.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g---~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG---HQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---BC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---Ce
Confidence 3788999999999999999999999998 9999997 22 45799999999999999 88896 588865 99
Q ss_pred eEEEEcCcccc
Q 020632 300 ISSNWDQWRLR 310 (323)
Q Consensus 300 l~V~~ak~~~~ 310 (323)
|+|+|++.+..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987644
No 206
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-16 Score=116.84 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=65.0
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----C--CCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----K--GSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~--g~~l~v~~a~~~ 142 (323)
++|||+|||.++++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++.|+ . |+.|+|+|++.+
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK----GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS----SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC----CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 8999999999999999999999999999998874 37899999999999999999998 6 899999999764
No 207
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8e-17 Score=120.86 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCce-EEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCe----EE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYE-SSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGST----LY 135 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~-~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~----l~ 135 (323)
+.++|||+|||.++++++|+++|++||.|. .+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 449999999999999999999999999988 8877654 56678999999999999999999998 8888 99
Q ss_pred EEEccCC
Q 020632 136 IDLAKSN 142 (323)
Q Consensus 136 v~~a~~~ 142 (323)
|+|++..
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 9998754
No 208
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-17 Score=122.95 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=68.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
.+.++|||+|||.++|+++|+++|++||.|..+ ...+.++|||||+|.+.++|. +..|||..|.| +.|+|+|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG---RSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT---EEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEcC
Confidence 357899999999999999999999999998887 444456799999999999999 88899999966 999999997
Q ss_pred cccc
Q 020632 307 WRLR 310 (323)
Q Consensus 307 ~~~~ 310 (323)
.+.+
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7644
No 209
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-17 Score=121.05 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=67.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +..|||..|.+ +.|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA---QMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE---ESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee---EEEeec
Confidence 47889999999999999999999999999999997643 4789999999999999 88899999966 899888
Q ss_pred EcCc
Q 020632 304 WDQW 307 (323)
Q Consensus 304 ~ak~ 307 (323)
++++
T Consensus 81 ~~~s 84 (85)
T 1x4e_A 81 GPSS 84 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 210
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=123.96 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=66.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC-----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~-----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
..++|||+||+.++|+++|+++|++|| |..|++..+. ++|||||+|.+.++|. + .|||..|.| +.|+|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---~~l~V 92 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---RRIRV 92 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT---BCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC---eEEEE
Confidence 478999999999999999999999999 9999997543 4799999999999999 7 999999966 99999
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
+|++.+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999765
No 211
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=118.33 Aligned_cols=73 Identities=25% Similarity=0.356 Sum_probs=64.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||+++++++|+++|+.||.|. +.+.. ..++|||||+|.+.++|++|++.|| .|+.|+|++++.+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW--QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 349999999999999999999999999986 33332 3678999999999999999999998 9999999999764
No 212
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=119.56 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=67.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..+.++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. +. ++..|.| +.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g---~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG---RWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT---EEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC---eEEE
Confidence 3457889999999999999999999999999999997643 3679999999999999 54 5788855 9999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999877443
No 213
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=122.92 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=69.0
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
...++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|| .|+ .|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 44599999999999999999999999999999988765 3668899999999999999999 888 9999999998
Q ss_pred cCCC
Q 020632 140 KSNS 143 (323)
Q Consensus 140 ~~~~ 143 (323)
+.+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7543
No 214
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.4e-17 Score=123.25 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=68.7
Q ss_pred CcceEEEeCCCCCCchHHHH---HHhhcCCCceEEEeccCCC-----CCCceEEEEEccHHHHHHHHHHhC----CCCeE
Q 020632 67 EVRTLFVAGLPEDVKPREIY---NLFREFPGYESSHLRSSTQ-----NSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~---~~F~~~G~v~~~~~~~~~~-----~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l 134 (323)
..++|||+|||+++++++|+ ++|++||.|..+.|..+.. .++|||||+|.+.++|++|++.|| .|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 34899999999999999999 9999999999888765532 466999999999999999999999 99999
Q ss_pred EEEEccCCC
Q 020632 135 YIDLAKSNS 143 (323)
Q Consensus 135 ~v~~a~~~~ 143 (323)
+|++++.+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999997654
No 215
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=2e-16 Score=124.12 Aligned_cols=78 Identities=24% Similarity=0.363 Sum_probs=70.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|++
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 3499999999999999999999999999999988655 56679999999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 101 ~~~~ 104 (126)
T 3ex7_B 101 VRGP 104 (126)
T ss_dssp ESSS
T ss_pred CCCC
Confidence 6543
No 216
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.3e-16 Score=117.28 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=68.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|+ .++ .|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999998887654 5678999999999999999999 888 99999999987
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
.+
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 217
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=121.00 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=65.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEe-cCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQ-STYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~-~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
.+.++|||+||+.++|+++|+++|+.|+.|..++.. .+..+|||||+|.+.++|. +..|||..|.+ +.|+|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG---NKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEEe
Confidence 357889999999999999999999988644333321 2234689999999999999 88899999966 99999999
Q ss_pred Cccccc
Q 020632 306 QWRLRS 311 (323)
Q Consensus 306 k~~~~~ 311 (323)
+.+...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 876443
No 218
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=1.9e-17 Score=156.33 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=69.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+||+++||+++|+++|++||.|+.|+|+.+ ..+|||||+|.+.++|. |..|||..|.| +.|+|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g---r~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG---RRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 3678999999999999999999999999999999753 35799999999999999 88999999966 999999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
|++.+
T Consensus 178 ~a~~~ 182 (437)
T 3pgw_S 178 VERGR 182 (437)
T ss_pred EeCCC
Confidence 99765
No 219
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=1.6e-16 Score=124.35 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=69.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
++++|||+||+.++|+++|+++|++||.|+.|++..+. .+|||||+|.+.++|. +..|||..|.| +.|+|+|
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 110 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDIQL 110 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS---CEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEEE
Confidence 47889999999999999999999999999999997643 5789999999999999 88899999966 9999999
Q ss_pred cCccc
Q 020632 305 DQWRL 309 (323)
Q Consensus 305 ak~~~ 309 (323)
|....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97653
No 220
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=115.69 Aligned_cols=70 Identities=26% Similarity=0.396 Sum_probs=64.3
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHh-C----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL-N----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l-~----~g~~l~v~~a~ 140 (323)
..++|||+|||.++++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++.| + .|+.|+|+|++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 349999999999999999999999999999988874 4789999999999999999988 6 99999999984
No 221
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=123.88 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=69.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ 304 (323)
..++|||+|||.++|+++|+++|++||.|..|+|+.+. .+|||||+|.+.++|. ...+||..|.| +.|+|+|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g---~~l~V~~ 102 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG---RVVEPKR 102 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETT---EEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECC---EEEEEEE
Confidence 46899999999999999999999999999999997643 4789999999999999 44449999966 9999999
Q ss_pred cCccccc
Q 020632 305 DQWRLRS 311 (323)
Q Consensus 305 ak~~~~~ 311 (323)
++.+...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9877444
No 222
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=120.52 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=68.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
..++|||+|||+++++++|+++|++||.|..+.|..+ .+.++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 3499999999999999999999999999988877654 45678999999999999999999998 999999999865
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
.
T Consensus 94 ~ 94 (114)
T 2do0_A 94 A 94 (114)
T ss_dssp C
T ss_pred C
Confidence 3
No 223
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=119.23 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=69.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC--CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~ 142 (323)
..++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++||+..+ .|+.|+|.++..+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTT
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCC
Confidence 3499999999999999999999999999988887654 46788999999999999999999754 9999999999765
Q ss_pred Cc
Q 020632 143 SR 144 (323)
Q Consensus 143 ~~ 144 (323)
..
T Consensus 94 ~~ 95 (103)
T 2cqg_A 94 QS 95 (103)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 224
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=5.2e-16 Score=121.45 Aligned_cols=77 Identities=26% Similarity=0.298 Sum_probs=69.6
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
...++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 44599999999999999999999999999988887654 56688999999999999999999998 99999999997
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 225
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=1.7e-16 Score=120.82 Aligned_cols=74 Identities=27% Similarity=0.310 Sum_probs=67.3
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 3499999999999999999999999999988877654 56678999999999999999999998 99999999985
No 226
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=121.23 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
..+.++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++||+. + .|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345599999999999999999999999999988887664 566789999999999999999998 7 999999999
Q ss_pred ccCCCc
Q 020632 139 AKSNSR 144 (323)
Q Consensus 139 a~~~~~ 144 (323)
++.+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876543
No 227
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=8.8e-17 Score=125.79 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=69.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
..++|||+||+.++|+++|+++|++||.|..|++..+ .++|||||+|.+.++|. + .|||..|.| +.|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG---RTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC---eEEEEE
Confidence 3678999999999999999999999999999999753 34789999999999999 6 899999966 999999
Q ss_pred EcCccccc
Q 020632 304 WDQWRLRS 311 (323)
Q Consensus 304 ~ak~~~~~ 311 (323)
|++.....
T Consensus 111 ~a~~~~~~ 118 (124)
T 2jwn_A 111 PKRTNMPG 118 (124)
T ss_dssp ESSCCCSS
T ss_pred ECCCCCCC
Confidence 99876433
No 228
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=118.17 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=65.9
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.+.++|||+|||.++++++|+++|++||.|.. +...++.++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKV--PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEEC--CBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEE--EECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 34599999999999999999999999998732 222466789999999999999999999998 999999999976
Q ss_pred CC
Q 020632 142 NS 143 (323)
Q Consensus 142 ~~ 143 (323)
+.
T Consensus 91 ~~ 92 (101)
T 2fc9_A 91 RG 92 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 229
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7.6e-17 Score=115.12 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=65.4
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEc
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (323)
++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++.++ .|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 58999999999999999999999999988887654 46789999999999999999999998 9999999987
No 230
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-16 Score=114.84 Aligned_cols=72 Identities=19% Similarity=0.355 Sum_probs=65.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.|+ .|+.|+|++++.+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 34999999999999999999999999999998887 3489999999999999999998 9999999999765
Q ss_pred Cc
Q 020632 143 SR 144 (323)
Q Consensus 143 ~~ 144 (323)
..
T Consensus 83 ~~ 84 (92)
T 2dgt_A 83 LR 84 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 231
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=7.2e-17 Score=131.41 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=67.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCP--GFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG--~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..++|||+||++++|+++|+++|++|| .|.+|+|+.+ .++|||||+|.+.++|. +..|||..|.| +.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G---r~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG---EKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT---EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEeE
Confidence 467899999999999999999999999 9999999754 34689999999999999 99999999966 9999
Q ss_pred EEEcCcc
Q 020632 302 SNWDQWR 308 (323)
Q Consensus 302 V~~ak~~ 308 (323)
|+|++.+
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9999765
No 232
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=7.4e-17 Score=116.53 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=62.1
Q ss_pred ceEEEeCCCCCC------chHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCC-eEEE
Q 020632 69 RTLFVAGLPEDV------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGS-TLYI 136 (323)
Q Consensus 69 ~tlfV~nLp~~~------~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~-~l~v 136 (323)
++|||+|||.++ ++++|+++|++||.|..+.|...++.++|||||+|.+.++|++|++.|| .|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 799999999999 7799999999999999998886677889999999999999999999998 777 6765
No 233
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=1.4e-16 Score=135.67 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=69.5
Q ss_pred CcCeEEEcCCC-CCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 230 PCATLFVANLG-PTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 230 ~~~tLfV~nLp-~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
++++|||+||+ +++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|. +..|||..|.| +.|+|.|++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFG---QKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECC---ceEEEEEcc
Confidence 47899999999 89999999999999999999999874 4699999999999999 89999999976 999999997
Q ss_pred cc
Q 020632 307 WR 308 (323)
Q Consensus 307 ~~ 308 (323)
.+
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 234
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.6e-16 Score=118.24 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=66.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||+++++++|+++|+.|| |..+.|..+ ++.++|||||+|.+.++|++|+ .|+ .|+.|+|++++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 49999999999999999999999997 888877654 4667899999999999999999 788 999999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 93 ~~~ 95 (103)
T 2dng_A 93 RKQ 95 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 235
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=2.1e-16 Score=121.02 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=65.4
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCC-CceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G-~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
++|||+|||+++++++|+++|++|| .|..+.+... .++|||||+|.+.++|++||+.|| .|+.|+|++++..
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 8999999999999999999999999 8988887532 478999999999999999999999 9999999998643
No 236
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=115.65 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=67.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCC---CCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST---QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~---~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
.++|||+|||.++++++|+++|++||.|..+.+..+. +.++|||||+|.+.++|++|++.|+ .|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 3899999999999999999999999999988876543 2278999999999999999999998 99999999986
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
..
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 237
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=121.78 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=67.4
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||+++++++|+++|++||.|..+.|. .++|||||+|.+.++|++|++.|| .|+.|+|+|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 35899999999999999999999999999988876 367899999999999999999999 9999999999765
Q ss_pred Cc
Q 020632 143 SR 144 (323)
Q Consensus 143 ~~ 144 (323)
..
T Consensus 85 ~~ 86 (111)
T 1whx_A 85 VF 86 (111)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 238
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=119.97 Aligned_cols=73 Identities=18% Similarity=0.299 Sum_probs=67.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.++|||+|||.++++++|+++|+.||.|..+.|..+ +|||||+|.+.++|++|++.|+ .|+.|+|.|++.+.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 499999999999999999999999999999988743 7899999999999999999998 99999999997654
Q ss_pred c
Q 020632 144 R 144 (323)
Q Consensus 144 ~ 144 (323)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 239
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=2.2e-16 Score=128.67 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=70.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.+.++|||+|||.++|+++|+++|++||.|+.|+|+.+. .+|||||+|.+.++|. +..|||..|.+ +.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD---RIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT---EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 357899999999999999999999999999999997643 3579999999999999 88899999965 99999
Q ss_pred EEcCcccc
Q 020632 303 NWDQWRLR 310 (323)
Q Consensus 303 ~~ak~~~~ 310 (323)
+|++.+..
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987643
No 240
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.3e-16 Score=117.72 Aligned_cols=72 Identities=24% Similarity=0.486 Sum_probs=65.9
Q ss_pred CcceEEEeCCCC-CCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~-~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
+.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 349999999998 99999999999999999998884 6899999999999999999998 899999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 83 ~~~ 85 (96)
T 2kvi_A 83 NAR 85 (96)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 241
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=118.93 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=65.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CC-----CeEEEEE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KG-----STLYIDL 138 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g-----~~l~v~~ 138 (323)
.++|||+|||+++++++|+++|++||.|..+.|..+ |||||+|.+.++|++||+.|| .| +.|+|++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 399999999999999999999999999999988754 899999999999999999998 77 9999999
Q ss_pred ccCCCc
Q 020632 139 AKSNSR 144 (323)
Q Consensus 139 a~~~~~ 144 (323)
++.+..
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 976543
No 242
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.2e-17 Score=117.97 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=63.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.++|||+|||.++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|| .|+.|++.++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 499999999999999999999999999998887654 56789999999999999999999997 6776666544
No 243
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=7.3e-16 Score=122.98 Aligned_cols=73 Identities=29% Similarity=0.449 Sum_probs=66.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
..++|||+|||.++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4599999999999999999999999999999887654 56789999999999999999999999 9999999875
No 244
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=5.5e-16 Score=117.22 Aligned_cols=71 Identities=28% Similarity=0.449 Sum_probs=65.3
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.|+ .|+.|+|++++.+.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 4999999999999999999999999999988876 4589999999999999999998 99999999997654
Q ss_pred c
Q 020632 144 R 144 (323)
Q Consensus 144 ~ 144 (323)
.
T Consensus 85 ~ 85 (103)
T 2dgu_A 85 Q 85 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 245
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=1e-16 Score=117.75 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=66.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
+++|||+|||+++|+++|+++|++| .|..|++. .++|||||+|.+.++|. +..|||..|.| +.|+|+|++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---KDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT---EEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEEEcCCC
Confidence 6789999999999999999999999 99999986 45699999999999999 88999999966 99999999655
No 246
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-15 Score=114.74 Aligned_cols=72 Identities=31% Similarity=0.420 Sum_probs=64.7
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcC--CCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREF--PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~--G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34999999999999999999999999 778877654 5799999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 247
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=3.8e-17 Score=121.63 Aligned_cols=75 Identities=12% Similarity=-0.060 Sum_probs=65.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|..++++.+ ..+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEE
Confidence 3688999999999999999999999999987777643 24689999999999999 88899999966 999999
Q ss_pred EcCc
Q 020632 304 WDQW 307 (323)
Q Consensus 304 ~ak~ 307 (323)
++++
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 9864
No 248
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=120.47 Aligned_cols=78 Identities=29% Similarity=0.482 Sum_probs=70.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4599999999999999999999999999988877654 56678999999999999999999998 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6544
No 249
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=125.57 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.+.++|||+|||.++|+++|+++|++||.|..|++..+ ..+|||||+|.+.++|. +..|||..|.| +.|+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 137 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRV 137 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT---EEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 35789999999999999999999999999999999654 35799999999999999 88999999966 99999
Q ss_pred EEc
Q 020632 303 NWD 305 (323)
Q Consensus 303 ~~a 305 (323)
+||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 250
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=118.66 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=64.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEe--ccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHL--RSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~--~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||+++++++|+++|+.||.|..+.+ ...++.++|||||+|.+.++|++|++.|+ .|+.|+|+++..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 499999999999999999999999999764332 23456678999999999999999999998 999999999864
No 251
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=124.22 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=66.8
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceE--EEeccC--CCCCCceEEEEEccHHHHHHHHHHhC--------CCCe
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYES--SHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--------KGST 133 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~--~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~--------~g~~ 133 (323)
...++|||+|||++++|++|+++|++||.|.. |.|..+ ++.++|||||+|.+. +|++|+..|+ .|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44599999999999999999999999999865 766654 577899999999999 9999999987 6889
Q ss_pred EEEEEccCC
Q 020632 134 LYIDLAKSN 142 (323)
Q Consensus 134 l~v~~a~~~ 142 (323)
|+|++++.+
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999998754
No 252
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=3.8e-17 Score=120.46 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=64.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
++|||+|||.++|+++|+++|++||.|..|++..+ .++|||||+|.+.+ |. +..|||..|.| +.|+|+||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g---~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG---RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS---SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC---eEEEEEEc
Confidence 47999999999999999999999999999999754 34789999999999 88 99999999966 99999999
Q ss_pred Ccccc
Q 020632 306 QWRLR 310 (323)
Q Consensus 306 k~~~~ 310 (323)
..+..
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 77643
No 253
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=119.02 Aligned_cols=77 Identities=21% Similarity=0.372 Sum_probs=68.3
Q ss_pred cceEEEeCCCCCCchHHHHHHhhc-CCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC-----CCCeEEEEEcc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAK 140 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~-~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~ 140 (323)
.++|||+|||+++++++|+++|+. ||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+++.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 499999999999999999999999 999988877654 56678999999999999999999988 68999999986
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 89 ~~~~ 92 (104)
T 2dhg_A 89 PKAS 92 (104)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 5543
No 254
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.7e-16 Score=116.67 Aligned_cols=76 Identities=20% Similarity=0.134 Sum_probs=65.8
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceE-EEeccC-CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~-~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~ 141 (323)
..++|||+|||+++++++|+++|+.||.|.. +.|..+ +++++|||||+|.+.++|++||+... .|+.|+|.++..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSR 93 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCH
Confidence 3499999999999999999999999999876 666543 66789999999999999999999832 999999998854
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
+
T Consensus 94 ~ 94 (104)
T 1wg5_A 94 A 94 (104)
T ss_dssp T
T ss_pred H
Confidence 3
No 255
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=115.39 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=66.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
..++|||+|||+++|+++|+++|+.| .|..|+++.+. .+|||||+|.+.++|. +. |||..|.| +.|+|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g---r~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG---RYIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT---EEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC---cEEEEEE
Confidence 47889999999999999999999999 99999997642 3679999999999999 66 99999966 9999999
Q ss_pred cCcc
Q 020632 305 DQWR 308 (323)
Q Consensus 305 ak~~ 308 (323)
++.+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9766
No 256
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=2e-16 Score=112.36 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=62.7
Q ss_pred eEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 70 tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
+|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++ ++ .|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999999999999999999999998887654 56789999999999999999998 66 9999999875
No 257
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=114.05 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=64.8
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||+++++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.|+ .|+.|+|++++..
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34999999999999999999999999999998887 3489999999999999999998 9999999999765
Q ss_pred C
Q 020632 143 S 143 (323)
Q Consensus 143 ~ 143 (323)
.
T Consensus 82 ~ 82 (90)
T 2dnp_A 82 Q 82 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 258
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=120.36 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=69.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++||+. + .|+.|+|++++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3599999999999999999999999999988887664 467899999999999999999998 6 99999999997
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6544
No 259
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=1.4e-16 Score=119.03 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=68.3
Q ss_pred cceEEEeCCCCCCchHHHH----HHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~----~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.++|||+|||.++++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|+
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3999999999999999999 9999999999888763 34567999999999999999999998 9999999999
Q ss_pred cCCCc
Q 020632 140 KSNSR 144 (323)
Q Consensus 140 ~~~~~ 144 (323)
+.+..
T Consensus 87 ~~~~~ 91 (97)
T 1nu4_A 87 KTDSD 91 (97)
T ss_dssp SSCCT
T ss_pred cCCCc
Confidence 76543
No 260
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=120.42 Aligned_cols=77 Identities=9% Similarity=0.210 Sum_probs=67.5
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCc-eEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v-~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+.++|||+|||+++++++|+++|+.||.| ..|.|..+ ++.++|||||+|.+.++|++||+. + .|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 344999999999999999999999999999 66766543 567899999999999999999988 6 9999999999
Q ss_pred cCCC
Q 020632 140 KSNS 143 (323)
Q Consensus 140 ~~~~ 143 (323)
..+.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6543
No 261
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=9.8e-17 Score=115.87 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=61.3
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEec--CCCCCeEEEEecCchhhH--HHhhCCceeccCCCC-ce
Q 020632 232 ATLFVANLGPTC------TEQELTQVFSKCPGFLKLKIQS--TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD-GI 300 (323)
Q Consensus 232 ~tLfV~nLp~~~------te~~L~~~F~~fG~i~~v~i~~--~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~-~l 300 (323)
++|||+|||..+ |+++|+++|++||.|..|++.+ +.++|||||+|.+.++|. +..|||..|.| + .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---QHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS---SSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC---ceeE
Confidence 679999999999 7799999999999999999873 245799999999999999 88999999966 7 88
Q ss_pred EEE
Q 020632 301 SSN 303 (323)
Q Consensus 301 ~V~ 303 (323)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 262
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=2.7e-16 Score=124.95 Aligned_cols=77 Identities=25% Similarity=0.405 Sum_probs=70.1
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4599999999999999999999999999999988754 56789999999999999999999998 99999999997
Q ss_pred CCC
Q 020632 141 SNS 143 (323)
Q Consensus 141 ~~~ 143 (323)
.+.
T Consensus 126 ~~~ 128 (135)
T 2lea_A 126 YGR 128 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 263
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.4e-16 Score=113.14 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=63.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
+|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. ..+|||..|.| +.|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g---~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN---KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSS---CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECC---EEEEEEeC
Confidence 49999999999999999999999999999996543 4789999999999999 55599999966 99999986
No 264
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=121.02 Aligned_cols=77 Identities=12% Similarity=0.008 Sum_probs=67.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEecC---CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGF-LKLKIQST---YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i-~~v~i~~~---~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ 304 (323)
+.++|||+|||+++|+++|+++|+.||.| ..|+|+.+ ..+|||||+|.+.++|. ...+||..|.+ +.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g---r~i~v~~ 90 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNG---REAFVHV 90 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETT---EEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCC---eEEEEEE
Confidence 47889999999999999999999999999 78888753 35799999999999999 44459999966 9999999
Q ss_pred cCccc
Q 020632 305 DQWRL 309 (323)
Q Consensus 305 ak~~~ 309 (323)
++.+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97663
No 265
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=116.87 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=66.9
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
...++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|++.|+ .|+.|+|+++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 445999999999999999999999999988766 3456688999999999999999999999 999999999976
Q ss_pred CC
Q 020632 142 NS 143 (323)
Q Consensus 142 ~~ 143 (323)
+.
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 266
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.6e-16 Score=116.88 Aligned_cols=77 Identities=27% Similarity=0.380 Sum_probs=64.7
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||.++++++|+++|+.|+.+..+. ...++.++|||||+|.+.++|++||+.|+ .|+.|+|+|++.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVT-DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEe-cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 349999999999999999999999886433222 22356688999999999999999999998 9999999999765
Q ss_pred Cc
Q 020632 143 SR 144 (323)
Q Consensus 143 ~~ 144 (323)
..
T Consensus 93 ~~ 94 (102)
T 2fc8_A 93 GE 94 (102)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 267
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=120.22 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=64.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEecc-CCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS-STQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.++|||+|||+++++++|+++|+.||.|..+.+.. .++.++|||||+|.+.++|++|++ |+ .|+.|+|.+++.+
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 49999999999999999999999999976633322 356789999999999999999999 88 9999999999754
No 268
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.7e-16 Score=117.00 Aligned_cols=76 Identities=14% Similarity=0.062 Sum_probs=65.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEec---CCCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLK-LKIQS---TYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~-v~i~~---~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ 304 (323)
..++|||+|||+++|+++|+++|++||.|.. |+|.. +..+|||||+|.+.++|. ...+||..|.+ +.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~g---r~i~v~~ 90 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGH---RYIEIFK 90 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSS---SCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCC---cEEEEEE
Confidence 4788999999999999999999999999987 87754 345799999999999999 44449999966 9999999
Q ss_pred cCcc
Q 020632 305 DQWR 308 (323)
Q Consensus 305 ak~~ 308 (323)
+..+
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8544
No 269
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.64 E-value=1.1e-15 Score=124.71 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=70.1
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|.+++.
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 499999999999999999999999999999988765 57789999999999999999999998 999999999976
Q ss_pred CC
Q 020632 142 NS 143 (323)
Q Consensus 142 ~~ 143 (323)
+.
T Consensus 150 ~~ 151 (158)
T 2kn4_A 150 GR 151 (158)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 270
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=113.89 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=66.3
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
..++|||+|||+++++++|+++|+.| .|..+.|..+ ++.++|||||+|.+.++|++|++ ++ .|+.|+|.++..
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 34999999999999999999999999 8888776654 56678999999999999999999 88 999999999875
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
+
T Consensus 87 ~ 87 (91)
T 2dgw_A 87 G 87 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 271
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=112.38 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=63.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
++|||+|||.++|+++|+++|++||.|..|++..+. ++|||||+|.+.++|. +..+| ..|.| +.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g---~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS---KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS---CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC---EEEEEEec
Confidence 369999999999999999999999999999997643 4789999999999999 88888 88865 99999987
No 272
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=115.84 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=64.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhHHHhhCCceeccCCCCceEEEEcCccc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCVCHILFSLLFKEKLSDGISSNWDQWRL 309 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~~~~lnG~~l~g~~g~~l~V~~ak~~~ 309 (323)
+.++|||+|||.++|+++|+++|++||.|..|++..+ ++|||||+|.+.++|. .+++..+.. +|+.|+|.+++.+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~--~~~~~~~~~-~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQ--SLCGEDLII-KGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHH--HTTTCEEEE-TTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHH--HHhcCCcee-CCEEEEEEecCCCC
Confidence 3788999999999999999999999999999999874 6799999999999997 334544433 44889999987664
Q ss_pred c
Q 020632 310 R 310 (323)
Q Consensus 310 ~ 310 (323)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 273
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=112.06 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=60.8
Q ss_pred ce-EEEeCCCCCCchHH----HHHHhhcCC-CceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 69 RT-LFVAGLPEDVKPRE----IYNLFREFP-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 69 ~t-lfV~nLp~~~~e~~----L~~~F~~~G-~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
.| |||+|||+++++++ |+++|++|| .|..|. .|+|||.|.+.++|++|++.|+ .||+|+|++
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 66 99999999999998 568999995 887661 1889999999999999999999 999999999
Q ss_pred ccCCCcc
Q 020632 139 AKSNSRS 145 (323)
Q Consensus 139 a~~~~~~ 145 (323)
|+.+++.
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9877663
No 274
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=9.5e-16 Score=117.33 Aligned_cols=69 Identities=23% Similarity=0.425 Sum_probs=64.4
Q ss_pred cceEEEeCCCCC-CchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~~-~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.++|||+|||++ +++++|+++|++||.|..+.| ++|||||+|.+.++|++|++.|+ .|+.|+|++++..
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 389999999999 999999999999999999888 57899999999999999999998 9999999999753
No 275
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.6e-16 Score=119.49 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=66.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCce----EEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYE----SSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~----~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.++|||+|||.++++++|+++|+.||.|. .+.+. ++.++|||||+|.+.++|++|++.|+ .|+.|+|+|+
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 49999999999999999999999999973 34433 66789999999999999999999998 9999999999
Q ss_pred cCCCc
Q 020632 140 KSNSR 144 (323)
Q Consensus 140 ~~~~~ 144 (323)
+.+..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 76543
No 276
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=3.8e-16 Score=120.64 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=63.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCc-----eEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDG-----ISSN 303 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~-----l~V~ 303 (323)
.++|||+|||+++|+++|+++|++||.|+.|+|+.+ |||||+|.+.++|. +..|||..|.+ +. |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRS---HEGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCC---TTSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECC---cEeeeEEEEec
Confidence 678999999999999999999999999999999875 89999999999999 89999999966 78 7777
Q ss_pred EcCccc
Q 020632 304 WDQWRL 309 (323)
Q Consensus 304 ~ak~~~ 309 (323)
.++.+.
T Consensus 90 ~~~~~~ 95 (115)
T 3beg_B 90 VDGPRS 95 (115)
T ss_dssp ECC---
T ss_pred cCCCCC
Confidence 765543
No 277
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.7e-16 Score=117.91 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=67.7
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCC-ceEEEec-cC--CCCCCceEEEEEccHHHHHHHHHHhC------CCCeEEEE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLR-SS--TQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYID 137 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~-v~~~~~~-~~--~~~~~g~aFV~f~~~~~A~~A~~~l~------~g~~l~v~ 137 (323)
.++|||+|||+++++++|+++|+.||. |..+.+. .+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 499999999999999999999999998 9998876 33 34789999999999999999999883 89999999
Q ss_pred EccCCC
Q 020632 138 LAKSNS 143 (323)
Q Consensus 138 ~a~~~~ 143 (323)
|++.+.
T Consensus 88 ~a~~~~ 93 (109)
T 2dis_A 88 WAEPEI 93 (109)
T ss_dssp ESCSSC
T ss_pred EcCCCC
Confidence 997643
No 278
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=9e-16 Score=124.57 Aligned_cols=76 Identities=26% Similarity=0.201 Sum_probs=66.7
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----C--CCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----K--GSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~--g~~l~v~~a~ 140 (323)
...+|||+||++.+++++|+++|++||.|+.|.|..+ ..+|||||+|.+.++|++|++.|+ . ++.|+|+|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3478999999999999999999999999999887533 357899999999999999999999 3 3999999998
Q ss_pred CCCc
Q 020632 141 SNSR 144 (323)
Q Consensus 141 ~~~~ 144 (323)
.+..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7543
No 279
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=1.5e-16 Score=118.33 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=63.9
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEecc--CCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS--STQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~--~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
++|||+|||+++++++|+++|++||.|..+.+.. .++.++|||||+|.+.++|++|++.|+ .|+.|+|+++.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 9999999999999999999999999976444332 355678999999999999999999998 999999998753
No 280
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.64 E-value=7.6e-16 Score=125.41 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=70.1
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
...++|||+|||.++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++||+.|+ .|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34599999999999999999999999999998887654 45678999999999999999999998 9999999999
Q ss_pred cCCC
Q 020632 140 KSNS 143 (323)
Q Consensus 140 ~~~~ 143 (323)
+...
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 281
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=1.3e-16 Score=117.57 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=65.5
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.+ |++|++.|+ .|+.|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 79999999999999999999999999999888765 4678999999999999 999999998 9999999998754
No 282
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=4.9e-16 Score=120.56 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=66.4
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCC---ceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEE
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~---v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (323)
.+.++|||+|||+++++++|+++|+.||. |..|.|..+ .++++|||||+|.+.++|++||+ ++ .|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34599999999999999999999999999 777776543 46679999999999999999999 77 99999999
Q ss_pred EccCC
Q 020632 138 LAKSN 142 (323)
Q Consensus 138 ~a~~~ 142 (323)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98543
No 283
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=115.01 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=63.5
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCC-ceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC-----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~-v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 499999999999999999999999999 6666663 47899999999999999999886 899999999976
Q ss_pred CC
Q 020632 142 NS 143 (323)
Q Consensus 142 ~~ 143 (323)
+.
T Consensus 83 ~~ 84 (93)
T 2cqh_A 83 KK 84 (93)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 284
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-15 Score=111.96 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=64.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|| ++++++|+++|++||.|..+.|. .++|||||+|.+.++|++|++.|+ .|+.|+|+|++.+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3499999996 99999999999999999998884 578899999999999999999998 9999999999765
Q ss_pred C
Q 020632 143 S 143 (323)
Q Consensus 143 ~ 143 (323)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 285
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=114.53 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=63.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
.++|||+|||+++|+++|+++|++||.|.+|.+.....+ ||||+|.+.++|. +. |||..|.| +.|+|+++..+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g---~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGG---HRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETT---EECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECC---EEEEEEECCcC
Confidence 678999999999999999999999999999833222223 9999999999999 66 99999966 99999998765
Q ss_pred c
Q 020632 309 L 309 (323)
Q Consensus 309 ~ 309 (323)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 286
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=125.94 Aligned_cols=76 Identities=13% Similarity=0.226 Sum_probs=67.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEe-cCCCCCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKIQ-STYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~--------v~i~-~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
++++|||+|||+++|+++|+++|++||.|.. +++. ++.++|||||+|.+.++|. +..|||..|.| +
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~ 120 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG---K 120 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---c
Confidence 4789999999999999999999999999875 4443 4556799999999999999 88899999966 9
Q ss_pred ceEEEEcCcc
Q 020632 299 GISSNWDQWR 308 (323)
Q Consensus 299 ~l~V~~ak~~ 308 (323)
.|+|+||+..
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999775
No 287
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=118.44 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=65.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE----ecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKI----QSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i----~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.++|||+|||.++|+++|+++|++||.|.. ++ ..+.++|||||+|.+.++|. +. |||..|.| +.|+|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g---~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG---NEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT---BCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC---cEEEEE
Confidence 4778999999999999999999999998766 22 23456799999999999999 76 99999966 999999
Q ss_pred EcCcccc
Q 020632 304 WDQWRLR 310 (323)
Q Consensus 304 ~ak~~~~ 310 (323)
|++.+..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9977633
No 288
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=116.21 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=64.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
+.++|||+|||+++++++|+++|+.| .|..|.|..+ .++++|||||+|.+.++|++|| .++ +|+.|+|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 45899999999999999999999999 7877777643 4678999999999999999999 566 999999988754
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 289
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=7.7e-16 Score=119.92 Aligned_cols=74 Identities=18% Similarity=0.106 Sum_probs=66.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
+.++|||+|| ++|+++|+++|++||.|..|++. .++|||||+|.+.++|. +..|||..|.| +.|+|+|++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g---~~l~V~~a~~ 110 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIARK 110 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS---CBCEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEeCC
Confidence 4789999996 79999999999999999999997 45599999999999999 88999999965 9999999987
Q ss_pred ccc
Q 020632 308 RLR 310 (323)
Q Consensus 308 ~~~ 310 (323)
+..
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 290
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=1.7e-15 Score=122.55 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=67.3
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||+++++++|+++|+.||.|..+.|..+ ++|||||+|.+.++|++|++.|+ .|+.|+|+|++.+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 3499999999999999999999999999999988754 68999999999999999999998 9999999999764
No 291
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=3.6e-16 Score=121.33 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=66.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEecCC---CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPG---FLKLKIQSTY---GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~---i~~v~i~~~~---~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V 302 (323)
..++|||+|||+++|+++|+++|+.||. |..|+|+.+. ++|||||+|.+.++|. ...|||..|.+ +.|+|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g---r~i~V 92 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGH---RYIEV 92 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETT---EEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC---eEEEE
Confidence 4788999999999999999999999998 8999987543 3689999999999999 33499999966 99999
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
.+++.+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 292
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=8.1e-16 Score=120.26 Aligned_cols=75 Identities=15% Similarity=0.332 Sum_probs=67.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||+++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|+ .|+ .|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3599999999999999999999999999988877653 5678999999999999999999 687 99999999987
Q ss_pred CC
Q 020632 141 SN 142 (323)
Q Consensus 141 ~~ 142 (323)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 293
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-17 Score=127.22 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=70.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEecC----CCCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~--------v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
.+.++|||+|||.++|+++|+++|++||.|.. |++..+ ..+|||||+|.+.++|. +..|||..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45788999999999999999999999999998 888654 34789999999999999 88899999966
Q ss_pred CCCCceEEEEcCccccc
Q 020632 295 KLSDGISSNWDQWRLRS 311 (323)
Q Consensus 295 ~~g~~l~V~~ak~~~~~ 311 (323)
+.|+|+|++.+...
T Consensus 85 ---~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 ---NPIKVSFATRRADF 98 (116)
Confidence 99999999877443
No 294
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=3e-16 Score=111.42 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=62.9
Q ss_pred eEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEc
Q 020632 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (323)
Q Consensus 70 tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (323)
+|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++..+ .|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 6999999999999999999999999998887654 46789999999999999999999754 8999999875
No 295
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=115.30 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=62.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEec-cCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLR-SSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~-~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||+++++++|+++|+.||.+ .|.|. ..+++++|||||+|.+.++|++||+ ++ .|+.|+|.++..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 3899999999999999999999999965 55554 3466789999999999999999995 56 899999998764
No 296
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=117.23 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=67.4
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC------------CCC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN------------KGS 132 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~------------~g~ 132 (323)
.+.++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 34599999999999999999999999999988877654 55678999999999999999999998 277
Q ss_pred eEEEEEccCC
Q 020632 133 TLYIDLAKSN 142 (323)
Q Consensus 133 ~l~v~~a~~~ 142 (323)
+|.|.|+...
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998643
No 297
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=7.7e-16 Score=117.29 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=66.7
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCC---ceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEE
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~---v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (323)
.+.++|||+|||+++++++|+++|+.||. |..+.|..+ .+.++|||||+|.+.++|++||+ ++ .|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 44599999999999999999999999988 778877654 46789999999999999999999 77 88999999
Q ss_pred EccCC
Q 020632 138 LAKSN 142 (323)
Q Consensus 138 ~a~~~ 142 (323)
++..+
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 88643
No 298
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=7.4e-16 Score=122.28 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=65.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCC---ceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~---v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
+.++|||+|||+++|+++|+++|+.||. |..|.|..+ .++++|||||+|.+.++|++||+ ++ .|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4599999999999999999999999999 777766543 46789999999999999999999 88 999999998
Q ss_pred ccC
Q 020632 139 AKS 141 (323)
Q Consensus 139 a~~ 141 (323)
+..
T Consensus 122 a~~ 124 (136)
T 2hgl_A 122 SHR 124 (136)
T ss_dssp CCH
T ss_pred CCh
Confidence 854
No 299
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=4.7e-16 Score=134.64 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=67.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCP--GFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG--~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..++|||+||++++|+++|+++|++|| .|++|+|+.+. ++|||||+|.+.++|. |..|||+.|.+ +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G---r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT---BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC---EEeE
Confidence 367899999999999999999999999 99999997653 4689999999999999 88899999966 9999
Q ss_pred EEEcCcc
Q 020632 302 SNWDQWR 308 (323)
Q Consensus 302 V~~ak~~ 308 (323)
|+|++..
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9999765
No 300
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=9.6e-16 Score=112.47 Aligned_cols=72 Identities=18% Similarity=0.404 Sum_probs=65.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|++|++.|+ .|+.|+|+++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 34899999999999999999999999 98888774 578999999999999999999999 9999999998654
Q ss_pred C
Q 020632 143 S 143 (323)
Q Consensus 143 ~ 143 (323)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 301
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=114.62 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=65.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..++|||+|||+++||++|+++|+.||. ..|+|+.+. ++|||||+|.+.++|. ...+||..|.+ +.|+|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g---r~i~V~~~ 89 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQH---RYVELFLN 89 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSS---SCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECC---cEEEEEEC
Confidence 3678999999999999999999999994 599987543 4679999999999999 44789999966 99999998
Q ss_pred Cccc
Q 020632 306 QWRL 309 (323)
Q Consensus 306 k~~~ 309 (323)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6653
No 302
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=2.1e-15 Score=117.97 Aligned_cols=75 Identities=25% Similarity=0.247 Sum_probs=65.8
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCce-EEEEEccHHHHHHHHHHhC----CC--CeEEEEEc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPF-AFAVFSDQQSALGAMYALN----KG--STLYIDLA 139 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~-aFV~f~~~~~A~~A~~~l~----~g--~~l~v~~a 139 (323)
....|||+||++.+|+++|+++|++||.|..|.|..+ .+|| |||+|.+.++|++|++.|| .| +.|+|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 3478899999999999999999999999998877643 3677 9999999999999999999 45 89999999
Q ss_pred cCCCc
Q 020632 140 KSNSR 144 (323)
Q Consensus 140 ~~~~~ 144 (323)
+....
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87644
No 303
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.1e-16 Score=113.13 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=63.2
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC--CCCeEEEEEccCCCc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKSNSR 144 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~~~ 144 (323)
..++|||+|||+++++++|+++|++||.|..+.|..+ ++|||||+|.+.++|++|+.... .|+.|+|.+++.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCC
Confidence 3499999999999999999999999999999988743 78999999999999986544322 888999998876443
No 304
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=4.4e-16 Score=110.58 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=62.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
+|||+|||.++|+++|+++|++||.|..|++..+ .++|||||+|.+.++|. ...++|..|.| +.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g---~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGL---SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTT---BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECC---EEEEEEEC
Confidence 5999999999999999999999999999999653 35799999999999999 55569999966 99999986
No 305
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.5e-15 Score=126.22 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=70.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.+.++|||+||+.++|+++|+++|++||.|+.|+|..+ ..+|||||+|.+.++|. +..|||..|.+ +.|+|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G---r~l~V~ 162 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDIQ 162 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS---SBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 34789999999999999999999999999999999763 35799999999999999 88899999966 999999
Q ss_pred EcCccc
Q 020632 304 WDQWRL 309 (323)
Q Consensus 304 ~ak~~~ 309 (323)
||....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997653
No 306
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.2e-15 Score=112.20 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=59.5
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC--CCCeEEEEEccCC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKSN 142 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~ 142 (323)
.+|||+|||++++|++|+++|++||.|..+.|..+ ++|||||+|.+.++|+++..... .|+.|.|.++..+
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC--
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCC
Confidence 89999999999999999999999999999988753 78999999999999984322211 6899999988654
No 307
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=1.1e-14 Score=129.86 Aligned_cols=72 Identities=29% Similarity=0.480 Sum_probs=65.5
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----C-CCeEEEEEcc
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----K-GSTLYIDLAK 140 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~-g~~l~v~~a~ 140 (323)
...++|||+|||.++++++|+++|+.||.|..+.|..+. +|||||+|.+.++|++|++.|| . |+.|+|+|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 446999999999999999999999999999998887432 5899999999999999999999 5 9999999986
No 308
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=116.69 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=63.3
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--C---CCCCceEEEEEccHHHHHHHHHHhC--CCCeEEEEEc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--T---QNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLA 139 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~---~~~~g~aFV~f~~~~~A~~A~~~l~--~g~~l~v~~a 139 (323)
..++|||+|||+++++++|+++|++||.|. +.+..+ + +.++|||||+|.+.++|++||+.++ +|+.|.+..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~ 85 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSS 85 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccC
Confidence 449999999999999999999999999998 555443 2 4789999999999999999999997 8888888755
Q ss_pred c
Q 020632 140 K 140 (323)
Q Consensus 140 ~ 140 (323)
.
T Consensus 86 ~ 86 (114)
T 2dnl_A 86 P 86 (114)
T ss_dssp S
T ss_pred C
Confidence 3
No 309
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=118.44 Aligned_cols=76 Identities=11% Similarity=0.218 Sum_probs=65.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceE-EEe-ccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYES-SHL-RSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~-~~~-~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
+.++|||+|||+++++++|+++|+.||.|.. +.+ ...++.++|||||+|.+.++|++||+ ++ .|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 3499999999999999999999999999764 333 33466789999999999999999999 88 99999999986
Q ss_pred CCC
Q 020632 141 SNS 143 (323)
Q Consensus 141 ~~~ 143 (323)
.+.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 310
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.6e-16 Score=121.28 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=64.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec----CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~----~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
...+|||+|||+++|+++|+++|+.||.|..+.++. +..+|||||+|.+.++|. +. |||..|.+ +.|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---r~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN---RFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT---SCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC---cEEEEE
Confidence 468899999999999999999999999987643332 234689999999999999 66 99999966 999999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
+++.+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99765
No 311
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=2e-15 Score=124.18 Aligned_cols=77 Identities=27% Similarity=0.375 Sum_probs=69.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||+++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++||+.|+ .|+.|.|.|+..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 489999999999999999999999999998887654 56678999999999999999999998 999999999976
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 152 ~~~ 154 (165)
T 1rk8_A 152 KGP 154 (165)
T ss_dssp CC-
T ss_pred CCC
Confidence 544
No 312
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=116.36 Aligned_cols=70 Identities=20% Similarity=0.412 Sum_probs=61.9
Q ss_pred cceEEE--eCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---------CCCeEEE
Q 020632 68 VRTLFV--AGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---------KGSTLYI 136 (323)
Q Consensus 68 ~~tlfV--~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---------~g~~l~v 136 (323)
.++||| +||++++++++|+++|++||.|+.|.|.. ++|||||+|.+.++|++|++.|| .|++|.|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 489999 77999999999999999999999888763 47899999999999999999998 2567888
Q ss_pred EEccC
Q 020632 137 DLAKS 141 (323)
Q Consensus 137 ~~a~~ 141 (323)
.+++.
T Consensus 101 ~~a~~ 105 (114)
T 2cq2_A 101 NFVEK 105 (114)
T ss_dssp EEESC
T ss_pred Eeccc
Confidence 88853
No 313
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=7.8e-16 Score=123.49 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=65.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEE--------EeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESS--------HLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~--------~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~ 135 (323)
.++|||+|||+++++++|+++|+.||.|..+ .+. .++.++|||||+|.+.++|++|++.|| .|+.|+
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4899999999999999999999999997653 222 356789999999999999999999999 999999
Q ss_pred EEEccCC
Q 020632 136 IDLAKSN 142 (323)
Q Consensus 136 v~~a~~~ 142 (323)
|++++..
T Consensus 124 V~~a~~~ 130 (143)
T 3egn_A 124 VQFARSA 130 (143)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999754
No 314
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=6e-16 Score=122.79 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=66.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEecC---CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPG---FLKLKIQST---YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~---i~~v~i~~~---~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
..++|||+|||+++|+++|+++|+.||. |..|+|+.+ .++|||||+|.+.++|. +. |||..|.+ +.|+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g---r~i~ 118 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH---RYIE 118 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---SEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---EEEE
Confidence 4778999999999999999999999999 888998754 34689999999999999 55 99999966 9999
Q ss_pred EEEcCcc
Q 020632 302 SNWDQWR 308 (323)
Q Consensus 302 V~~ak~~ 308 (323)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998654
No 315
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=115.72 Aligned_cols=74 Identities=9% Similarity=-0.003 Sum_probs=65.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEcC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
..+|||+|||+++|+++|+++|+.| .|..|+|+.+ +++|||||+|.+.++|. ...|||..|.+ +.|+|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g---r~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQ---RYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETT---EEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC---eEEEEEECC
Confidence 5789999999999999999999999 8999999753 35799999999999999 44899999966 999998875
Q ss_pred cc
Q 020632 307 WR 308 (323)
Q Consensus 307 ~~ 308 (323)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 316
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=1.6e-14 Score=119.95 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=70.3
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
....++|||+|||+++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+||
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 344599999999999999999999999999999888765 46688999999999999999999998 8999999999
Q ss_pred cCC
Q 020632 140 KSN 142 (323)
Q Consensus 140 ~~~ 142 (323)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 317
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=7.5e-15 Score=138.64 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 65 ~~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
....++|||+|||++||+++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++||+.|| .|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999998887654 56789999999999999999999999 999999999
Q ss_pred ccCCC
Q 020632 139 AKSNS 143 (323)
Q Consensus 139 a~~~~ 143 (323)
+....
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97543
No 318
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=110.96 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=62.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||+++++++|+++|+.||.|..|.+...++ + ||||+|.+.++|++|++ |+ .|+.|+|+++..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g--~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKG--V-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSC--C-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCC--c-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 348999999999999999999999999998874433333 3 99999999999999999 88 9999999887543
No 319
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=1.7e-15 Score=129.70 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=69.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
+.+||||+|||+++||++|+++|++||.|++|+|+++. ++|||||+|.+.++|. +..|||..+.+ +.|+|.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g---~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG---KPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC---cccccc
Confidence 47899999999999999999999999999999997643 4689999999999999 89999999966 999999
Q ss_pred EcCcccc
Q 020632 304 WDQWRLR 310 (323)
Q Consensus 304 ~ak~~~~ 310 (323)
++.....
T Consensus 91 ~~~~~~~ 97 (213)
T 4f02_A 91 WSQRDPS 97 (213)
T ss_dssp ECCCCTH
T ss_pred ccccccc
Confidence 9876643
No 320
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8.7e-15 Score=113.91 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=62.9
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCce-EEEEEccHHHHHHHHHHhC----CC--CeEEEEEccC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPF-AFAVFSDQQSALGAMYALN----KG--STLYIDLAKS 141 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~-aFV~f~~~~~A~~A~~~l~----~g--~~l~v~~a~~ 141 (323)
..|||+||++.+++++|+++|++||.|..|.|..+ .|| |||+|.+.++|++|++.|+ .| +.|+|++|+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 55789999999999999999999999998887542 386 9999999999999999999 44 6899999986
Q ss_pred CCc
Q 020632 142 NSR 144 (323)
Q Consensus 142 ~~~ 144 (323)
+..
T Consensus 102 ~~l 104 (124)
T 2e5i_A 102 TRL 104 (124)
T ss_dssp SCC
T ss_pred Ccc
Confidence 653
No 321
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1.5e-15 Score=131.42 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=68.4
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCC--CceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G--~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (323)
..++|||+||++++|+++|+++|+.|| .|..|.|..+ +++++|||||+|.+.++|++||+.|| .|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 458999999999999999999999999 8988877654 66789999999999999999999998 999999999
Q ss_pred ccCCC
Q 020632 139 AKSNS 143 (323)
Q Consensus 139 a~~~~ 143 (323)
++...
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 86543
No 322
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=8.7e-16 Score=117.00 Aligned_cols=76 Identities=9% Similarity=0.015 Sum_probs=66.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEecC---CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPG---FLKLKIQST---YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~---i~~v~i~~~---~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V 302 (323)
..++|||+|||+++|+++|+++|+.||. |..|+|+.+ .++|||||+|.+.++|. ...|||..|.+ +.|+|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g---r~i~V 86 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQ---RYVEV 86 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSS---SCCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCC---eEEEE
Confidence 4788999999999999999999999888 899998653 35789999999999999 33399999966 99999
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
.+++.+
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998654
No 323
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=110.23 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=64.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEE-EeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESS-HLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~-~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
.++|||+|||+++++++|+++|+.||.|..+ .+..+.. .|.|||+|.+.++|++|++.|+ .|+.|+|+++..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 4899999999999999999999999999988 4664433 3349999999999999999998 9999999999764
No 324
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.5e-15 Score=114.46 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=66.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..++|||+|||.++|+++|+++|++||.|..|++..+. .+|||||+|.+.++|. ... ||..|.| +.|+|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g---~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHG---KKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETT---EECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECC---EEEEEEEC
Confidence 46889999999999999999999999999999997643 4689999999999999 444 9999966 89999998
Q ss_pred Ccc
Q 020632 306 QWR 308 (323)
Q Consensus 306 k~~ 308 (323)
..+
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 655
No 325
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=3.1e-15 Score=109.28 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=63.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCC
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKC----P-------GFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKL 296 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~f----G-------~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~ 296 (323)
+.++|||+|||.++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|. + .|||..|.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g-- 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG-- 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC--
Confidence 37889999999999999999999999 8 8999998864 599999999999999 7 999999966
Q ss_pred CCceEEEE
Q 020632 297 SDGISSNW 304 (323)
Q Consensus 297 g~~l~V~~ 304 (323)
+.|+|+.
T Consensus 80 -~~l~V~r 86 (87)
T 2hzc_A 80 -QSLKIRR 86 (87)
T ss_dssp -EECEEEC
T ss_pred -eEEEEeC
Confidence 8999873
No 326
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=3.3e-15 Score=116.75 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=63.7
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCce--EEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYE--SSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~--~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (323)
..++|||+|||++++|++|+++|+.| .|. .|.|..+ .++++|||||+|.+.++|++||+..+ .|+.|+|.++.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 34899999999999999999999999 565 6766543 46789999999999999999999765 89999998875
Q ss_pred C
Q 020632 141 S 141 (323)
Q Consensus 141 ~ 141 (323)
.
T Consensus 120 ~ 120 (126)
T 2hgm_A 120 Q 120 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 327
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=2.7e-15 Score=129.64 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=67.6
Q ss_pred CCcCeEEEcCCCCCC---------CHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceecc---
Q 020632 229 TPCATLFVANLGPTC---------TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKE--- 294 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~---------te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g--- 294 (323)
..+++|||+||+.++ +|++|+++|++||.|++|+|+.. +|||||+|.+.++|. +.+|||..|..
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 348899999999998 79999999999999999999974 499999999999999 99999999910
Q ss_pred ------CCCCceEEEEcCcc
Q 020632 295 ------KLSDGISSNWDQWR 308 (323)
Q Consensus 295 ------~~g~~l~V~~ak~~ 308 (323)
.+|+.|+|.||+..
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTGGGGGGSCCCEEEECC--
T ss_pred ccccccCCCCEEEEEEccCC
Confidence 03499999999865
No 328
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-16 Score=123.30 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=69.2
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceE--------EEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CC
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYES--------SHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KG 131 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~--------~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g 131 (323)
.+.++|||+|||.++++++|+++|++||.|.. +.|..+ ++.++|||||+|.+.++|++|++.|+ .|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34599999999999999999999999999877 655543 46789999999999999999999998 99
Q ss_pred CeEEEEEccCCCc
Q 020632 132 STLYIDLAKSNSR 144 (323)
Q Consensus 132 ~~l~v~~a~~~~~ 144 (323)
+.|+|++++.+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999976544
No 329
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=111.51 Aligned_cols=79 Identities=16% Similarity=0.012 Sum_probs=67.8
Q ss_pred CcCeEEEcCCCCCCC-----------HHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCC
Q 020632 230 PCATLFVANLGPTCT-----------EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKL 296 (323)
Q Consensus 230 ~~~tLfV~nLp~~~t-----------e~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~ 296 (323)
++++|+|+||-...+ +++|+++|++||.|.+|.|.....+|||||+|.+.++|. +..|||..|.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g-- 91 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG-- 91 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT--
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC--
Confidence 488999999954332 689999999999999998865567899999999999999 89999999965
Q ss_pred CCceEEEEcCccccc
Q 020632 297 SDGISSNWDQWRLRS 311 (323)
Q Consensus 297 g~~l~V~~ak~~~~~ 311 (323)
+.|+|+|++.+..-
T Consensus 92 -r~l~v~~a~~~~~~ 105 (112)
T 2dit_A 92 -RQITAQAWDGTTDY 105 (112)
T ss_dssp -EECEEEECCSCCCS
T ss_pred -cEEEEEEeCCCCCc
Confidence 99999999776443
No 330
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=1.5e-15 Score=114.59 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=66.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHH---HhCCCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMY---ALNKGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~---~l~~g~~l~v~~a~~~ 142 (323)
..++|||+|||+++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++ .+ .|+.|.|.++..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~-~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINF-HGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEE-TTEECEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeE-CCEEEEEEECCcC
Confidence 3499999999999999999999999999988877654 55678999999999999999999 22 8999999998754
Q ss_pred C
Q 020632 143 S 143 (323)
Q Consensus 143 ~ 143 (323)
.
T Consensus 87 ~ 87 (102)
T 2xs2_A 87 Q 87 (102)
T ss_dssp C
T ss_pred c
Confidence 3
No 331
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=6.5e-15 Score=113.62 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=60.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCe-----EEEEE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGST-----LYIDL 138 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~-----l~v~~ 138 (323)
.++|||+|||+++++++|+++|++||.|..+.|..+ |||||+|.+.++|++||+.|| .|+. |+|..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 389999999999999999999999999999988744 899999999999999999998 8888 66665
Q ss_pred ccC
Q 020632 139 AKS 141 (323)
Q Consensus 139 a~~ 141 (323)
+..
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 332
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=6.3e-15 Score=107.59 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=60.7
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcC----C-------CceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----C
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREF----P-------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----K 130 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~----G-------~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~ 130 (323)
...++|||+|||+++++++|+++|++| | .|..+.+. .++|||||+|.+.++|++|+ .|+ .
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~----~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC----SSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec----CCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 345999999999999999999999999 8 78888776 34789999999999999999 888 8
Q ss_pred CCeEEEEE
Q 020632 131 GSTLYIDL 138 (323)
Q Consensus 131 g~~l~v~~ 138 (323)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99998863
No 333
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=7.3e-15 Score=120.35 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=68.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
+++|||+|||.++|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|. +..|||..|.+ +.|+|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN---KRLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC---cEEEEEe
Confidence 7889999999999999999999999999999997543 4689999999999999 88899999966 9999999
Q ss_pred cCccc
Q 020632 305 DQWRL 309 (323)
Q Consensus 305 ak~~~ 309 (323)
++...
T Consensus 80 ~~~~~ 84 (168)
T 1b7f_A 80 ARPGG 84 (168)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 97654
No 334
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=115.53 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=62.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEec-------CCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS-------TYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~-------~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.++|||+|||+++|+++|+++|++||.|. ++++. +.++|||||+|.+.++|. +..|++ +. |+.|.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~---G~~~~ 81 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED---GKLYL 81 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET---TEEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC---CcEEE
Confidence 67899999999999999999999999999 77754 245799999999999999 777732 42 35666
Q ss_pred EEEcCccccccccCcce
Q 020632 302 SNWDQWRLRSWIQSFKC 318 (323)
Q Consensus 302 V~~ak~~~~~~~~~~~~ 318 (323)
+..++....++.+..+|
T Consensus 82 ~~~~~~~~~~~~~v~p~ 98 (114)
T 2dnl_A 82 CVSSPTIKDKPVQIRPW 98 (114)
T ss_dssp EECCSSSCSEEEEEECC
T ss_pred eccCCCcCCCeeeccCC
Confidence 66554443343334444
No 335
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=2.3e-15 Score=119.82 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=63.9
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
..++|||+|||+++||++|+++|+.|| +..|.|..+ .++++|||||+|.+.++|++|| .++ .|+.|+|.++..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 448999999999999999999999999 557766543 5678999999999999999999 666 899999988754
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
.
T Consensus 123 ~ 123 (139)
T 2hgn_A 123 T 123 (139)
T ss_dssp S
T ss_pred C
Confidence 3
No 336
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-15 Score=116.06 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=63.6
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCc----eEEEecc-CCCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGY----ESSHLRS-STQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v----~~~~~~~-~~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~ 138 (323)
+.++|||+|||+++|+++|+++|+.||.| ..|.|.. .+++++|||||+|.+.++|++||+... .|+.|+|..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45899999999999999999999999975 4565543 466789999999999999999998733 889999987
Q ss_pred ccC
Q 020632 139 AKS 141 (323)
Q Consensus 139 a~~ 141 (323)
+..
T Consensus 102 a~~ 104 (123)
T 2dha_A 102 STA 104 (123)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 337
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.2e-15 Score=120.34 Aligned_cols=78 Identities=23% Similarity=0.248 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcC
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
++|||+|||.++|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|. +..|||..|.+ +.|+|.|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN---NIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC---CeeEEEEcC
Confidence 579999999999999999999999999999997543 4689999999999999 88999999966 999999997
Q ss_pred cccccc
Q 020632 307 WRLRSW 312 (323)
Q Consensus 307 ~~~~~~ 312 (323)
......
T Consensus 78 ~~~~~~ 83 (166)
T 3md3_A 78 QSQQSS 83 (166)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 764433
No 338
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=9.9e-15 Score=119.24 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=68.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.++|||+|||.++|+++|+++|+.||.|.+|++..+. ++|||||+|.+.++|. +..|||..|.+ +.|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT---KTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC---ceEEEEe
Confidence 6789999999999999999999999999999997644 3579999999999999 88899999966 9999999
Q ss_pred cCccc
Q 020632 305 DQWRL 309 (323)
Q Consensus 305 ak~~~ 309 (323)
++...
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97654
No 339
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=7e-15 Score=127.29 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCcCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 229 TPCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 229 ~~~~tLfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
+++++|||+|||. ++|+++|+++|++||.|.+|++..+. +|||||+|.+.++|. +..|||..|.| +.|+|.|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSS---SBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEEe
Confidence 3488999999999 99999999999999999999999855 699999999999999 88899999966 99999999
Q ss_pred Ccc
Q 020632 306 QWR 308 (323)
Q Consensus 306 k~~ 308 (323)
+.+
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 765
No 340
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=1.9e-15 Score=120.34 Aligned_cols=76 Identities=14% Similarity=0.013 Sum_probs=66.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~a 305 (323)
..++|||+|||+++||++|+++|++|| |++|+|+.+ .++|||||+|++.++|. ...|||..|.+ +.|+|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~g---R~i~V~~a 120 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQH---RYIELFLN 120 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSS---CCCCCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECC---EEEEEEEC
Confidence 367899999999999999999999999 779998653 35789999999999999 44899999966 99999998
Q ss_pred Cccc
Q 020632 306 QWRL 309 (323)
Q Consensus 306 k~~~ 309 (323)
..+.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7653
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.5e-14 Score=112.61 Aligned_cols=70 Identities=24% Similarity=0.361 Sum_probs=63.9
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (323)
.++|||+|| ++++++|+++|+.||.|..+.|. .++|||||+|.+.++|++|++.|+ .|+.|+|.|++.+.
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 499999996 79999999999999999888875 578999999999999999999998 99999999997653
No 342
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=7.6e-15 Score=114.71 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=63.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeE--EEEEecC---CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEE
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFL--KLKIQST---YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~--~v~i~~~---~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~ 303 (323)
..++|||+|||+++||++|+++|+.| .|. .|+|+.+ .++|||||+|.+.++|. ...++|..|.+ +.|+|.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~g---R~I~V~ 116 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH---RYIEVF 116 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTT---BCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECC---EEEEEE
Confidence 46789999999999999999999999 787 8888653 35799999999999999 44568899965 999999
Q ss_pred EcCc
Q 020632 304 WDQW 307 (323)
Q Consensus 304 ~ak~ 307 (323)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8743
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=2.1e-14 Score=108.72 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=65.9
Q ss_pred CcCeEEEcCCCC-----CCCHHHHHHHhhcCCCeEEEEEecC-----CCCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 230 PCATLFVANLGP-----TCTEQELTQVFSKCPGFLKLKIQST-----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 230 ~~~tLfV~nLp~-----~~te~~L~~~F~~fG~i~~v~i~~~-----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
++++|+|+||-. +-++++|+++|++||.|.+|+|..+ .++|||||+|.+.++|. +..|||+.+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G--- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG--- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC---
Confidence 488999999962 3378999999999999999999753 34799999999999999 99999999965
Q ss_pred CceEEEEcCcc
Q 020632 298 DGISSNWDQWR 308 (323)
Q Consensus 298 ~~l~V~~ak~~ 308 (323)
|.|+|+|++..
T Consensus 84 r~i~v~~a~~~ 94 (105)
T 2pe8_A 84 RVVKACFYNLD 94 (105)
T ss_dssp EECEEEECCHH
T ss_pred cEEEEEEcCHH
Confidence 99999999654
No 344
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2e-14 Score=121.17 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=67.8
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC---CCCeEEEEEccCC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKSN 142 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~~ 142 (323)
.++|||+|||+++++++|+++|++||.|..|.|..+ .+.++|||||+|.+.++|++|++.++ .|+.|.|.+++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 589999999999999999999999999998877654 46678999999999999999999887 9999999987654
No 345
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=2.5e-14 Score=117.85 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=69.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC------CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST------YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~------~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V 302 (323)
.++|||+|||.++|+++|+++|++||.|.+|+++.+ .++|||||+|.+.++|. +..|||..+.+..++.+++
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 678999999999999999999999999999999764 34579999999999999 8899999887544588999
Q ss_pred EEcCccc
Q 020632 303 NWDQWRL 309 (323)
Q Consensus 303 ~~ak~~~ 309 (323)
.+++...
T Consensus 83 ~~~~~~~ 89 (175)
T 3nmr_A 83 KPADSEK 89 (175)
T ss_dssp EECGGGC
T ss_pred ccccccc
Confidence 8886553
No 346
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.4e-15 Score=114.79 Aligned_cols=75 Identities=15% Similarity=-0.014 Sum_probs=63.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCe----EEEEEecC---CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGF----LKLKIQST---YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISS 302 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i----~~v~i~~~---~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V 302 (323)
..+|||+|||+++|+++|+++|++||.| ..|+|+.+ +++|||||+|.+.++|. ...+||..|.+ +.|+|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g---R~i~V 99 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK---RYIEL 99 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS---CEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC---eEEEE
Confidence 6789999999999999999999999975 57888653 34689999999999999 44459999965 89999
Q ss_pred EEcCcc
Q 020632 303 NWDQWR 308 (323)
Q Consensus 303 ~~ak~~ 308 (323)
..+..+
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 347
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=121.72 Aligned_cols=74 Identities=20% Similarity=0.171 Sum_probs=68.6
Q ss_pred cCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 231 CATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 231 ~~tLfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
+++|||+|||. ++|+++|+++|++||.|.+|++..+. +|||||+|.+.++|. +..|||..|.| +.|+|.|++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSS---CCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecC---eEEEEEEecC
Confidence 67899999999 99999999999999999999998855 699999999999999 88899999966 9999999976
Q ss_pred c
Q 020632 308 R 308 (323)
Q Consensus 308 ~ 308 (323)
.
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 348
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=2.7e-14 Score=119.99 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=67.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEE
Q 020632 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 229 ~~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~ 303 (323)
...++|||+|||.++|+++|+++|+.||.|.+|+++.+. ++|||||+|.+.++|. ...++|..|.| +.|+|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g---~~l~v~ 87 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG---RVVEPK 87 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETT---EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECC---EEeeee
Confidence 357899999999999999999999999999999998643 3679999999999999 55669999966 999999
Q ss_pred EcCccc
Q 020632 304 WDQWRL 309 (323)
Q Consensus 304 ~ak~~~ 309 (323)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987653
No 349
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=3.3e-14 Score=121.31 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=68.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC----CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~----~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ 304 (323)
.++|||+|||.++|+++|+++|+.||.|..|+++.+ .++|||||+|.+.++|. +..|||..|.+ +.|+|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~l~v~~ 104 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG---RNIKVGR 104 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCCEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC---eeEEEec
Confidence 678999999999999999999999999999999753 35799999999999999 88899999966 9999999
Q ss_pred cCccc
Q 020632 305 DQWRL 309 (323)
Q Consensus 305 ak~~~ 309 (323)
+....
T Consensus 105 ~~~~~ 109 (216)
T 2qfj_A 105 PSNIG 109 (216)
T ss_dssp CSCCG
T ss_pred CCCcc
Confidence 87653
No 350
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.51 E-value=4.3e-14 Score=115.67 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=67.4
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
.++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++ ++ .|+.|+|.||..
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 479999999999999999999999999999887764 56789999999999999999998 66 999999999975
Q ss_pred C
Q 020632 142 N 142 (323)
Q Consensus 142 ~ 142 (323)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 351
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=5.8e-14 Score=115.92 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=66.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccCC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (323)
..++|||+|||.++++++|+++|+.||.|..+ ...+.++|||||+|.+.++|++|++.|+ .|+.|+|+|++.+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 45999999999999999999999999988766 4566789999999999999999999999 9999999999754
No 352
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=4.3e-14 Score=119.10 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=65.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecC---CCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEEcC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNWDQ 306 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~---~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ak 306 (323)
.++|||+|||+++|+++|+++|++||.|..|++..+ ..+|||||+|++.++|. ...+.|..|.| +.|+|.|++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G---r~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE---TDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETT---EECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECC---EEEEEEEhH
Confidence 688999999999999999999999999999999753 34689999999999999 44445568855 999999987
Q ss_pred cccccc
Q 020632 307 WRLRSW 312 (323)
Q Consensus 307 ~~~~~~ 312 (323)
.-..+|
T Consensus 186 ~y~~~K 191 (193)
T 2voo_A 186 DYFAKK 191 (193)
T ss_dssp TC----
T ss_pred HHHHHh
Confidence 765444
No 353
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=1.4e-13 Score=115.72 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEcc
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (323)
..++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|.+++
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4499999999999999999999999999988877654 56678999999999999999999998 99999999997
Q ss_pred CCC
Q 020632 141 SNS 143 (323)
Q Consensus 141 ~~~ 143 (323)
.+.
T Consensus 193 ~~~ 195 (198)
T 2yh0_A 193 VGA 195 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 354
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=4.4e-14 Score=116.19 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=66.6
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|+||
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 489999999999999999999999999998887655 56678999999999999999999998 9999999987
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=5.1e-14 Score=121.70 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=64.5
Q ss_pred CCcceEEEeCCCCCC---------chHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC---C---
Q 020632 66 DEVRTLFVAGLPEDV---------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---K--- 130 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~---------~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~---~--- 130 (323)
..++||||+||+..+ +|++|+++|++||.|+.|.|. .++|||||+|.+.++|+.|++.|+ .
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~----~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV----ESKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE----GGGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE----CCCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 346999999999998 799999999999999999887 357899999999999999999998 3
Q ss_pred ----------CCeEEEEEccCCC
Q 020632 131 ----------GSTLYIDLAKSNS 143 (323)
Q Consensus 131 ----------g~~l~v~~a~~~~ 143 (323)
|+.|.|.||+...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 6789999997543
No 356
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.2e-14 Score=109.59 Aligned_cols=76 Identities=5% Similarity=-0.011 Sum_probs=63.7
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhcCCCeEEEEEecCC----CCCeEEEEecC----chh----hH--HH--hhCCce
Q 020632 232 ATLFVANL----GPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQV----TCV----CV--CH--ILFSLL 291 (323)
Q Consensus 232 ~tLfV~nL----p~~~te~~L~~~F~~fG~i~~v~i~~~~----~~g~aFV~F~~----~~~----A~--~~--~lnG~~ 291 (323)
..|||+|| ++.++|++|+++|+.||.|.+|+++.+. ++|||||+|.+ .++ |. +. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 56999999 9999999999999999999999997654 47899999996 434 44 56 799999
Q ss_pred eccCCCCceEEEEcCcccc
Q 020632 292 FKEKLSDGISSNWDQWRLR 310 (323)
Q Consensus 292 l~g~~g~~l~V~~ak~~~~ 310 (323)
|.| +.|+|.+-++...
T Consensus 83 I~G---r~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMG---FKFEVILNKHSIL 98 (136)
T ss_dssp ETT---EEEEEEECCTTHH
T ss_pred ecC---cEEEEEECcccHH
Confidence 955 9999999877643
No 357
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=7.9e-14 Score=126.74 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=66.6
Q ss_pred CCcCeEEEcC--CCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCC--ceEE
Q 020632 229 TPCATLFVAN--LGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD--GISS 302 (323)
Q Consensus 229 ~~~~tLfV~n--Lp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~--~l~V 302 (323)
.++++|||+| |+..+||++|+++|++||.|++|++.. +||||||+|++.++|. +++|||+.+.+..|+ .|.|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 4588999999 578999999999999999999998876 4599999999999999 999999999643334 6888
Q ss_pred EEcCc
Q 020632 303 NWDQW 307 (323)
Q Consensus 303 ~~ak~ 307 (323)
.|+..
T Consensus 94 ~~~~~ 98 (345)
T 3tht_A 94 NFVEK 98 (345)
T ss_dssp EECSS
T ss_pred EEeec
Confidence 99853
No 358
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.45 E-value=2e-13 Score=120.47 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=67.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCc
Q 020632 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQW 307 (323)
Q Consensus 230 ~~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~ 307 (323)
..++|||+|||.++|+++|+++|+.||.|..|++.+. +|||||+|.+.++|. +..|||..|.| +.|+|.|+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~~a~~ 95 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD--RGFGFIRLESRTLAEIAKAELDGTILKS---RPLRIRFATH 95 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEETT---EECEEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CcEEEEEECCHHHHHHHHHHcCCcEECC---ceeEeeeccc
Confidence 4778999999999999999999999999999999763 599999999999999 88899999966 9999999865
Q ss_pred c
Q 020632 308 R 308 (323)
Q Consensus 308 ~ 308 (323)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.45 E-value=9.4e-14 Score=107.00 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=62.5
Q ss_pred ceEEEeCC----CCCCchHHHHHHhhcCCCceEEEeccC--CCCCCceEEEEEcc----HHH----HHHHHH--HhC---
Q 020632 69 RTLFVAGL----PEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSD----QQS----ALGAMY--ALN--- 129 (323)
Q Consensus 69 ~tlfV~nL----p~~~~e~~L~~~F~~~G~v~~~~~~~~--~~~~~g~aFV~f~~----~~~----A~~A~~--~l~--- 129 (323)
..|||+|| ++.++|++|+++|+.||.|.++.+..+ ++.++|||||+|.| .++ |.+|+. .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999988877655 67889999999996 333 788888 566
Q ss_pred -CCCeEEEEEccCC
Q 020632 130 -KGSTLYIDLAKSN 142 (323)
Q Consensus 130 -~g~~l~v~~a~~~ 142 (323)
.|+.|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 9999999986543
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.2e-13 Score=98.85 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=61.2
Q ss_pred cCeEEEcCCC-------CCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceE
Q 020632 231 CATLFVANLG-------PTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGIS 301 (323)
Q Consensus 231 ~~tLfV~nLp-------~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~ 301 (323)
.++|-|.-.. .++|+++|+++|++||.|.+|+|.. .++|||||+|++.++|. +..++| +.+ +.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g---~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVD---NPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSS---SBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCC---CeEE
Confidence 4556666554 4689999999999999999999984 66799999999999999 776655 434 8999
Q ss_pred EEEcCccccc
Q 020632 302 SNWDQWRLRS 311 (323)
Q Consensus 302 V~~ak~~~~~ 311 (323)
|+|++.+..+
T Consensus 84 V~~a~~~~~~ 93 (100)
T 2d9o_A 84 ISWLEGQPQD 93 (100)
T ss_dssp EECSSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999877443
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-12 Score=100.11 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=64.0
Q ss_pred cceEEEeCCCCCCc-----------hHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCC
Q 020632 68 VRTLFVAGLPEDVK-----------PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGS 132 (323)
Q Consensus 68 ~~tlfV~nLp~~~~-----------e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~ 132 (323)
.++|+|.||-.... +++|+++|++||.|..+.|..+ .++|||||+|.+.++|++|++.|| .|+
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR--HPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT--CTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC--CCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 49999999944432 5799999999999998877433 379999999999999999999999 999
Q ss_pred eEEEEEccCCCc
Q 020632 133 TLYIDLAKSNSR 144 (323)
Q Consensus 133 ~l~v~~a~~~~~ 144 (323)
.|+|.++..+.+
T Consensus 93 ~l~v~~a~~~~~ 104 (112)
T 2dit_A 93 QITAQAWDGTTD 104 (112)
T ss_dssp ECEEEECCSCCC
T ss_pred EEEEEEeCCCCC
Confidence 999999976544
No 362
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=5.1e-13 Score=101.10 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=64.1
Q ss_pred cceEEEeCCCC-----CCchHHHHHHhhcCCCceEEEeccC---CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEE
Q 020632 68 VRTLFVAGLPE-----DVKPREIYNLFREFPGYESSHLRSS---TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (323)
Q Consensus 68 ~~tlfV~nLp~-----~~~e~~L~~~F~~~G~v~~~~~~~~---~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~ 135 (323)
.++|+|+||-. +-++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++|++.|| .||.|+
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 39999999963 2368899999999999999887654 24679999999999999999999999 999999
Q ss_pred EEEccC
Q 020632 136 IDLAKS 141 (323)
Q Consensus 136 v~~a~~ 141 (323)
|.++..
T Consensus 88 v~~a~~ 93 (105)
T 2pe8_A 88 ACFYNL 93 (105)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 999865
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=3.3e-13 Score=102.20 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=64.7
Q ss_pred CcCeEEEcCC--CCCCC--------HHHHHHHhhcCCCeEEEEEecC------CCCCeEEEEecCchhhH--HHhhCCce
Q 020632 230 PCATLFVANL--GPTCT--------EQELTQVFSKCPGFLKLKIQST------YGPPVAFVDFQVTCVCV--CHILFSLL 291 (323)
Q Consensus 230 ~~~tLfV~nL--p~~~t--------e~~L~~~F~~fG~i~~v~i~~~------~~~g~aFV~F~~~~~A~--~~~lnG~~ 291 (323)
|+++|.|.|+ +.++. +++|+++|++||.|.+|+|.++ .++|+|||+|.+.++|. +..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4889999998 33443 3799999999999999999754 24799999999999999 99999999
Q ss_pred eccCCCCceEEEEcCcc
Q 020632 292 FKEKLSDGISSNWDQWR 308 (323)
Q Consensus 292 l~g~~g~~l~V~~ak~~ 308 (323)
+.| |.|+|+|+...
T Consensus 84 f~G---R~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FAN---RVVVTKYCDPD 97 (105)
T ss_dssp ETT---EECEEEEECHH
T ss_pred eCC---CEEEEEEeCHH
Confidence 965 99999998544
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.6e-12 Score=96.11 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=63.1
Q ss_pred cceEEEeCCC-------CCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC--CCCeEEEEE
Q 020632 68 VRTLFVAGLP-------EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDL 138 (323)
Q Consensus 68 ~~tlfV~nLp-------~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~--~g~~l~v~~ 138 (323)
.++|-|.... .++++++|+++|++||.|..|.|. +.++|||||+|.+.++|++|++.++ .|+.|+|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~ 86 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISW 86 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEEC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEE
Confidence 4677777665 458999999999999999998887 3678999999999999999999987 899999999
Q ss_pred ccCCC
Q 020632 139 AKSNS 143 (323)
Q Consensus 139 a~~~~ 143 (323)
++.+.
T Consensus 87 a~~~~ 91 (100)
T 2d9o_A 87 LEGQP 91 (100)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87543
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=1.2e-12 Score=119.08 Aligned_cols=70 Identities=21% Similarity=0.420 Sum_probs=61.0
Q ss_pred CcceEEEeC--CCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC-------CCC--eEE
Q 020632 67 EVRTLFVAG--LPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-------KGS--TLY 135 (323)
Q Consensus 67 ~~~tlfV~n--Lp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~-------~g~--~l~ 135 (323)
+.++|||+| |++.+||++|+++|++||.|+.|.+.. ++|||||+|.+.++|++|++.|| .|+ .|.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 349999999 589999999999999999999887763 67999999999999999999999 355 577
Q ss_pred EEEcc
Q 020632 136 IDLAK 140 (323)
Q Consensus 136 v~~a~ 140 (323)
+.++.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 77774
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.35 E-value=2.5e-12 Score=98.59 Aligned_cols=75 Identities=9% Similarity=0.167 Sum_probs=64.3
Q ss_pred CcCeEEEcCCCCCC----------CHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCC
Q 020632 230 PCATLFVANLGPTC----------TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLS 297 (323)
Q Consensus 230 ~~~tLfV~nLp~~~----------te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g 297 (323)
++++|.+.|+=..- .++||++.|++||.|.+|+|.++..+|+|||+|.+.++|. +..|||+.+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--- 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG--- 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 37889999984221 2358999999999999999987666899999999999999 99999999965
Q ss_pred CceEEEEcCc
Q 020632 298 DGISSNWDQW 307 (323)
Q Consensus 298 ~~l~V~~ak~ 307 (323)
|.|+|+|+..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999854
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=2.9e-12 Score=98.90 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=63.7
Q ss_pred CcCeEEEcCCC--CCC---CHHHHHHHhhcCCCeEEEEEecCC--------CCCeEEEEecCchhhH--HHhhCCceecc
Q 020632 230 PCATLFVANLG--PTC---TEQELTQVFSKCPGFLKLKIQSTY--------GPPVAFVDFQVTCVCV--CHILFSLLFKE 294 (323)
Q Consensus 230 ~~~tLfV~nLp--~~~---te~~L~~~F~~fG~i~~v~i~~~~--------~~g~aFV~F~~~~~A~--~~~lnG~~l~g 294 (323)
++++|+|.||- .++ .++||++.|++||.|.+|+|.++. .+|++||+|.+.++|. +..|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 48899999994 222 368999999999999999997542 2489999999999999 99999999965
Q ss_pred CCCCceEEEEcCc
Q 020632 295 KLSDGISSNWDQW 307 (323)
Q Consensus 295 ~~g~~l~V~~ak~ 307 (323)
|.|+|+|+..
T Consensus 99 ---R~i~v~~~~~ 108 (118)
T 3ue2_A 99 ---RKVVAEVYDQ 108 (118)
T ss_dssp ---EECEEEEECH
T ss_pred ---cEEEEEEcCh
Confidence 9999999754
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=5.3e-13 Score=100.86 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=57.4
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeEEEEEecCC---CCCeEEEEecCchhhH--HHhhCCceeccCCCC
Q 020632 236 VANLGPTCTEQELTQVF------------SKCPGFLKLKIQSTY---GPPVAFVDFQVTCVCV--CHILFSLLFKEKLSD 298 (323)
Q Consensus 236 V~nLp~~~te~~L~~~F------------~~fG~i~~v~i~~~~---~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~ 298 (323)
+.||+..+|+++|++.| ++||.|.+|+|.++. ++|||||+|.+.++|. +..|||+.+.| +
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---r 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---Q 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT---E
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC---E
Confidence 56777777888777666 999999999997643 4799999999999999 99999999965 9
Q ss_pred ceEEEEc
Q 020632 299 GISSNWD 305 (323)
Q Consensus 299 ~l~V~~a 305 (323)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999997
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=1.1e-11 Score=93.81 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=63.4
Q ss_pred cceEEEeCC--CCCCc--------hHHHHHHhhcCCCceEEEeccCC----CCCCceEEEEEccHHHHHHHHHHhC----
Q 020632 68 VRTLFVAGL--PEDVK--------PREIYNLFREFPGYESSHLRSST----QNSQPFAFAVFSDQQSALGAMYALN---- 129 (323)
Q Consensus 68 ~~tlfV~nL--p~~~~--------e~~L~~~F~~~G~v~~~~~~~~~----~~~~g~aFV~f~~~~~A~~A~~~l~---- 129 (323)
.+.|.|.|+ +.++. +++|++.|++||.|.++.|..+. ..++|||||+|.+.++|++|++.||
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 389999999 44444 36899999999999999887653 2578999999999999999999999
Q ss_pred CCCeEEEEEccC
Q 020632 130 KGSTLYIDLAKS 141 (323)
Q Consensus 130 ~g~~l~v~~a~~ 141 (323)
.||.|+|.++..
T Consensus 85 ~GR~i~v~~~~~ 96 (105)
T 3v4m_A 85 ANRVVVTKYCDP 96 (105)
T ss_dssp TTEECEEEEECH
T ss_pred CCCEEEEEEeCH
Confidence 999999999854
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.24 E-value=2.6e-12 Score=97.03 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=57.1
Q ss_pred EeCCCCCCchHHHHHHh------------hcCCCceEEEeccC-CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEE
Q 020632 73 VAGLPEDVKPREIYNLF------------REFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (323)
Q Consensus 73 V~nLp~~~~e~~L~~~F------------~~~G~v~~~~~~~~-~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~ 135 (323)
+.||++.+++++|++.| ++||.|..+.|..+ .+.++|||||+|.+.++|++|++.|| .|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777888777666 99999999988765 35679999999999999999999999 999999
Q ss_pred EEEc
Q 020632 136 IDLA 139 (323)
Q Consensus 136 v~~a 139 (323)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=4.4e-11 Score=92.21 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=61.7
Q ss_pred ceEEEeCCC--CCC---chHHHHHHhhcCCCceEEEeccCC------CCCCceEEEEEccHHHHHHHHHHhC----CCCe
Q 020632 69 RTLFVAGLP--EDV---KPREIYNLFREFPGYESSHLRSST------QNSQPFAFAVFSDQQSALGAMYALN----KGST 133 (323)
Q Consensus 69 ~tlfV~nLp--~~~---~e~~L~~~F~~~G~v~~~~~~~~~------~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~ 133 (323)
++|+|.|+- .++ -+++|++.|++||.|..|.|..+. ..++||+||+|.+.++|++|++.|| .||.
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 999999993 222 357999999999999988876542 2456999999999999999999999 9999
Q ss_pred EEEEEccC
Q 020632 134 LYIDLAKS 141 (323)
Q Consensus 134 l~v~~a~~ 141 (323)
|+|.++..
T Consensus 101 i~v~~~~~ 108 (118)
T 3ue2_A 101 VVAEVYDQ 108 (118)
T ss_dssp CEEEEECH
T ss_pred EEEEEcCh
Confidence 99999854
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=2.1e-10 Score=88.07 Aligned_cols=72 Identities=8% Similarity=-0.014 Sum_probs=61.8
Q ss_pred CCcCeEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecC-chhhH--HHhhC--CceeccCCCCceEE
Q 020632 229 TPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQV-TCVCV--CHILF--SLLFKEKLSDGISS 302 (323)
Q Consensus 229 ~~~~tLfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~-~~~A~--~~~ln--G~~l~g~~g~~l~V 302 (323)
+++..|||+||+.+ +++++|+++|++||.|..|.+..+. ..|||.|.+ .++|. +..|| |..|.+ ..+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g---~~~~~ 90 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKDANNGNLQLRN---KEVTW 90 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHHTTTSCBCTTS---SSEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHHhhcCCcEEeC---cEEEE
Confidence 35888999999999 9999999999999999999999866 589999999 67777 88884 777754 77887
Q ss_pred EEc
Q 020632 303 NWD 305 (323)
Q Consensus 303 ~~a 305 (323)
+..
T Consensus 91 evL 93 (121)
T 1owx_A 91 EVL 93 (121)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=83.26 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCcCeEEEcCCC----CCCCH----HHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCceeccCCCCc
Q 020632 229 TPCATLFVANLG----PTCTE----QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDG 299 (323)
Q Consensus 229 ~~~~tLfV~nLp----~~~te----~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~ 299 (323)
|+..||+|..++ .++-+ .+|.+.|++||.|..+|++. +.+||+|.+.++|. ...|||..|.| |.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~----d~~fVtF~d~~sAlaAi~mnG~~v~G---r~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE----DKMWVTFLEGSSALNVLSLNGKELLN---RT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS----SSEEEEESSHHHHHHGGGGTTCEETT---EE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec----CCEEEEECChHHHHHHHhcCCeEeCC---eE
Confidence 457789998876 23333 67999999999999999998 34999999999999 44499999966 99
Q ss_pred eEEEEcCc
Q 020632 300 ISSNWDQW 307 (323)
Q Consensus 300 l~V~~ak~ 307 (323)
|+|++++.
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999854
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.09 E-value=5.8e-10 Score=85.34 Aligned_cols=72 Identities=10% Similarity=0.110 Sum_probs=60.5
Q ss_pred ceEEEeCCCC--CC--------chHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeE
Q 020632 69 RTLFVAGLPE--DV--------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (323)
Q Consensus 69 ~tlfV~nLp~--~~--------~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l 134 (323)
+.|.+.|+=. +. -+++|++.|++||.|..+.|..+. .+|||||+|.+.++|++|++.|| .||.|
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 8999999932 21 123889999999999999886543 58999999999999999999999 99999
Q ss_pred EEEEccCC
Q 020632 135 YIDLAKSN 142 (323)
Q Consensus 135 ~v~~a~~~ 142 (323)
+|.++...
T Consensus 86 ~v~~~~~~ 93 (114)
T 3s6e_A 86 TAAYVPLP 93 (114)
T ss_dssp EEEEECHH
T ss_pred EEEEEcHH
Confidence 99998543
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=4.8e-09 Score=80.52 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=59.6
Q ss_pred CCcceEEEeCCCCC-CchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEcc-HHHHHHHHHHhC------CCCeEEEE
Q 020632 66 DEVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD-QQSALGAMYALN------KGSTLYID 137 (323)
Q Consensus 66 ~~~~tlfV~nLp~~-~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~-~~~A~~A~~~l~------~g~~l~v~ 137 (323)
..++.|||+||+.+ +++++|+++|+.||.|..|.+.... -.|||.|.+ .++|..|+..++ .|..++++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 33499999999999 9999999999999999999887432 259999999 899999999997 56667776
Q ss_pred Ec
Q 020632 138 LA 139 (323)
Q Consensus 138 ~a 139 (323)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2e-09 Score=78.03 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=58.6
Q ss_pred CCCcCeEEEcCCCCC-----CCH----HHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCceeccCCC
Q 020632 228 VTPCATLFVANLGPT-----CTE----QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLS 297 (323)
Q Consensus 228 ~~~~~tLfV~nLp~~-----~te----~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g 297 (323)
.||..||+|..++.+ +-+ .+|.+.|++||.|..+|++.+ -+||+|.+.++|. ...|||..|.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~ldG~~v~G--- 84 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLDVDGMKVKG--- 84 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHHGGGSEETT---
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHhcCCeeeCC---
Confidence 345788999998743 222 569999999999999999983 3999999999999 33499999966
Q ss_pred CceEEEEc
Q 020632 298 DGISSNWD 305 (323)
Q Consensus 298 ~~l~V~~a 305 (323)
|.|+|++.
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999985
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-08 Score=72.76 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=55.3
Q ss_pred ceEEEeCCC----CCCch----HHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEE
Q 020632 69 RTLFVAGLP----EDVKP----REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (323)
Q Consensus 69 ~tlfV~nLp----~~~~e----~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v 136 (323)
-||+|.-.+ .++-. .+|.+.|++||.|..+++..+. +||+|.+.++|.+|++ |+ .||.|+|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 799998877 23333 4899999999998888877433 9999999999999998 88 9999999
Q ss_pred EEccC
Q 020632 137 DLAKS 141 (323)
Q Consensus 137 ~~a~~ 141 (323)
+++..
T Consensus 81 ~lkt~ 85 (91)
T 2dnr_A 81 ALKSP 85 (91)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 98764
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=5e-08 Score=83.50 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=55.1
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEecC--------CCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEEEcCcc
Q 020632 242 TCTEQELTQVFSKCPGFLKLKIQST--------YGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSNWDQWR 308 (323)
Q Consensus 242 ~~te~~L~~~F~~fG~i~~v~i~~~--------~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~~ak~~ 308 (323)
+-.+++|++.|++||.|.+|+|.+. ..+|++||+|.+.++|. +..|||+.+.| |.|+++|....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g---r~i~~~~~~~~ 213 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG---RKVVAEVYDQE 213 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEEECCHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC---eEEEEEEcCHH
Confidence 4467899999999999999999632 34689999999999999 99999999966 99999998543
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.6e-07 Score=67.99 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=53.6
Q ss_pred ceEEEeCCCCC------Cch---HHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEE
Q 020632 69 RTLFVAGLPED------VKP---REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (323)
Q Consensus 69 ~tlfV~nLp~~------~~e---~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~ 135 (323)
-||+|.-++.+ .++ .+|.+.|+.||.|..+++..++ +||+|.+.++|.+||+ |+ .||.|+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 79999988743 232 4789999999998888877443 9999999999999998 87 999999
Q ss_pred EEEc
Q 020632 136 IDLA 139 (323)
Q Consensus 136 v~~a 139 (323)
|++.
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9864
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.41 E-value=3.2e-07 Score=78.44 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=53.6
Q ss_pred CchHHHHHHhhcCCCceEEEeccC------CCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEccC
Q 020632 80 VKPREIYNLFREFPGYESSHLRSS------TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (323)
Q Consensus 80 ~~e~~L~~~F~~~G~v~~~~~~~~------~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (323)
-.+++|++.|++||.|.++.|..+ .+.++|++||+|.+.++|++|++.|+ .||.|.+.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 456799999999999998887533 23678999999999999999999999 999999999754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=8.3e-07 Score=65.59 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=63.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcC-----CCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKC-----PGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~f-----G~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.++|-+-|||..+++..|+.+.+.| |.|+.+.++.+. +=|+|+|.|...|. ..+|+|..|.| +.|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~g---r~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQG---KVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEETT---EEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeecC---eEEEec
Confidence 6789999999999999999999999 999999999866 79999999999999 77999999954 999987
Q ss_pred E
Q 020632 304 W 304 (323)
Q Consensus 304 ~ 304 (323)
=
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=7.3e-06 Score=60.59 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=59.7
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcC-----CCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREF-----PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~-----G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (323)
..++|-+-|||..+++..|+.|.+.+ |.+..+.|+.+- +=|+|+|.|...|-+|.-.|+ .|+.|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 34999999999999999999999999 999888888652 239999999999999988888 99999886
Q ss_pred E
Q 020632 138 L 138 (323)
Q Consensus 138 ~ 138 (323)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 383
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.93 E-value=9.4e-05 Score=53.45 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=54.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCC------CCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG------PPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~------~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
.|.|++||+.+||+++.+.++....+.....+.++. -.-|+|.|.+.+++. .+.++|+.+.++
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 589999999999999999999999888887776552 126999999999998 999999999875
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=8.9e-05 Score=54.30 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=54.0
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhc---CCC--ceEEEeccCCCCCCceEEEEEccHHHHHHHHHH-hC--CCCeEEEEE
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFRE---FPG--YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA-LN--KGSTLYIDL 138 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~---~G~--v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~-l~--~g~~l~v~~ 138 (323)
-.++|.|.|||..++++.|.-+|+. -|. |+.+.... +-|+|+|.+.+.|++.|+. -+ ++..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 3489999999999999999999997 243 77777653 2399999999999999988 33 777787754
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.72 E-value=0.00017 Score=52.15 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=45.5
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
+.++| ++|..+...||.++|+.||.|...=|. ++. |||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-DTs-----Alvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-DTS-----AFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-TTE-----EEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-CCe-----EEEEecCHHHHHHHHHhcc
Confidence 66666 999999999999999999976544333 454 9999999999999999885
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.00012 Score=53.87 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=60.6
Q ss_pred cCeEEEcCCCCCC-CH----HHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhCCceeccCCCCceEEE
Q 020632 231 CATLFVANLGPTC-TE----QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 231 ~~tLfV~nLp~~~-te----~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~lnG~~l~g~~g~~l~V~ 303 (323)
.++|+|.||+.++ +. +.++++|..|+++......+.-+ =..|.|.+.++|. ...|+|..++| +.|+|=
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g---~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLG---KEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETT---EECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecC---ceeEEE
Confidence 5679999998765 22 57799999999988887776443 5689999999999 89999999987 899999
Q ss_pred EcCcc
Q 020632 304 WDQWR 308 (323)
Q Consensus 304 ~ak~~ 308 (323)
|+...
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99744
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.0012 Score=48.36 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=54.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhc---C--CCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEE
Q 020632 231 CATLFVANLGPTCTEQELTQVFSK---C--PGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSN 303 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~---f--G~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~ 303 (323)
.++|.|.|||++++++.|.-+|+. - |.|..|+... +-|+|+|.+.+.|+ +.+-.-+.|.+ ..|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k~~H~L~~---~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQADHELHG---AQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTCSCCBSSS---SBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcCCcceecC---eEEEEE
Confidence 778999999999999999999998 2 4577887765 68999999999999 77666677755 566664
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.35 E-value=0.0002 Score=51.95 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=44.7
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
+.++| ++|..+...||.++|+.||.|.. .-..++. |||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I-~WidDTs-----Alvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQI-SWIDDTS-----AFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEE-EEEETTE-----EEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEE-EEEcCCe-----EEEEecCHHHHHHHHHhcc
Confidence 45566 99999999999999999996543 3333555 9999999999999999885
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.31 E-value=0.00066 Score=49.88 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=55.2
Q ss_pred ceEEEeCCCCCC-ch----HHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC----CCCeEEEEEc
Q 020632 69 RTLFVAGLPEDV-KP----REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (323)
Q Consensus 69 ~tlfV~nLp~~~-~e----~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (323)
.+|+|.||+.++ .. +.++++|..|+++..-.... +..-..|.|.+.++|.+|...|+ .|+.|+|-++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC----cceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 789999998765 32 46789999999966655442 22238999999999999999999 9999999998
Q ss_pred c
Q 020632 140 K 140 (323)
Q Consensus 140 ~ 140 (323)
.
T Consensus 82 q 82 (104)
T 1wey_A 82 Q 82 (104)
T ss_dssp C
T ss_pred C
Confidence 6
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.11 E-value=0.00086 Score=48.65 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=42.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhh
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHIL 287 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~l 287 (323)
.++++| +.|.++.-.||.++|+.||+| .|+-+. . ..|||.|.+.+.|. +..+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid-D--TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-D--TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE-T--TEEEEEEEEECHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc-C--CeEEEEecCHHHHHHHHHhc
Confidence 456777 999999999999999999954 444454 2 59999999999999 5545
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.99 E-value=0.0034 Score=45.37 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=41.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhh
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHIL 287 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~l 287 (323)
.++++| +.|.++...||.++|+.||+|. |+-+. + ..|||.|.+.+.|. +..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid-D--TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID-D--TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE-T--TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc-C--CeEEEEecCHHHHHHHHHhc
Confidence 556777 9999999999999999999754 33343 2 69999999999999 5544
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.94 E-value=0.0016 Score=47.32 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=51.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCC------CCeEEEEecCchhhH--HHhhCCceeccC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG------PPVAFVDFQVTCVCV--CHILFSLLFKEK 295 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~------~g~aFV~F~~~~~A~--~~~lnG~~l~g~ 295 (323)
+-.|.|+.||+.+||+++.+.++..-.+.....+.++. -.-|+|.|.+.++.. .+.++|..+.++
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 34599999999999999999998876654444443331 136999999999999 999999999874
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.53 E-value=0.014 Score=41.96 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=47.1
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC----CCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS----TQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~----~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
..|-|++||..+||+++.+.++....++....... ......-|+|.|.+.+++..-.+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 57899999999999999999999887655443321 11122359999999999888888885
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.50 E-value=0.0016 Score=61.17 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=43.2
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
.|+|||. .+..+++.+|.++|++||.|.++.+.... .-||.|+|.+.++++.+++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~---g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF---GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS---SEEEEEECC---CCHHHHSSCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC---CeEEEEEeCCHHHHHHHHhccC
Confidence 5999998 79999999999999999999998877422 2499999999999997765543
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.27 E-value=0.015 Score=43.80 Aligned_cols=61 Identities=11% Similarity=0.027 Sum_probs=51.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCceecc
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKE 294 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g 294 (323)
...|-|.+.++.. -..|...|++||.|.+.... ...++-.|.|.+..+|+ ....||..|.+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL~kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKALSKDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHHHhCCeEecC
Confidence 5668999999886 56788999999999988873 33479999999999999 88889999954
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.00 E-value=0.004 Score=58.37 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=44.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH-HHhhCCcee
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLF 292 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l 292 (323)
.++|||. .+..+++.+|.+.|++||.|..+...+.+ +.||.|+|.+.+++. +....+..+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHSSCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHhccCCCc
Confidence 6789998 69999999999999999999999887644 369999999999999 544444443
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.04 E-value=0.055 Score=39.16 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=42.4
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccC----CCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS----TQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~----~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
-.|-|+.||..+||+++.+.++..-.++....... ....-..|+|.|.+.++...-.+..+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 67899999999999998888776544322211111 11111249999999999888888776
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.68 E-value=0.1 Score=39.24 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=46.8
Q ss_pred CcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC
Q 020632 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (323)
Q Consensus 67 ~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~ 129 (323)
..+-|-|-++|... ...+...|++||.|...... .+..+-.|.|.+..+|++||..-.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~kNG 80 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALSKDG 80 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHHhCC
Confidence 35889999999885 56788899999998766652 244589999999999999997753
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.87 E-value=0.34 Score=46.08 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=48.3
Q ss_pred cceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhCCCCeEEE
Q 020632 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLYI 136 (323)
Q Consensus 68 ~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~~g~~l~v 136 (323)
.+.++|+ ++..+...+|.++|+.||.+.... ..++. |||.|.+.+.|..++..++....++|
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~w-iddt~-----a~V~~~~~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISW-IDDTS-----AFVSLSQPEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEE-CSSSE-----EEEECSCHHHHHHHHHHHTTCSSCEE
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEE-EcCCe-----EEEEECCHHHHHHHHHHHHhCCceEE
Confidence 3677777 999999999999999999765443 33333 99999999999999999963334444
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.97 E-value=0.079 Score=40.50 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=51.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEec----------------C-CCCCeEEEEecCchhhH-HHhhCCceec
Q 020632 233 TLFVANLGPTCTEQELTQVFSKCPGFLK-LKIQS----------------T-YGPPVAFVDFQVTCVCV-CHILFSLLFK 293 (323)
Q Consensus 233 tLfV~nLp~~~te~~L~~~F~~fG~i~~-v~i~~----------------~-~~~g~aFV~F~~~~~A~-~~~lnG~~l~ 293 (323)
-|.|.+.|++.+ ..+.+.|++||.|.+ +...+ . ...++--|+|++..+|. ...-||..|.
T Consensus 9 ~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~ 87 (132)
T 3p3d_A 9 AILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFN 87 (132)
T ss_dssp EEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEET
T ss_pred EEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeC
Confidence 477888877765 557889999999876 21110 0 02368899999999999 8889999996
Q ss_pred cCCCCceEEEEcCc
Q 020632 294 EKLSDGISSNWDQW 307 (323)
Q Consensus 294 g~~g~~l~V~~ak~ 307 (323)
| .-|=|..-+.
T Consensus 88 G---~mIGV~Py~~ 98 (132)
T 3p3d_A 88 G---VLLGVIPYTK 98 (132)
T ss_dssp T---EECEEEECCH
T ss_pred c---EEEEEEECCH
Confidence 5 5666665443
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.55 E-value=1 Score=42.86 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=42.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH--HHhhC
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV--CHILF 288 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~--~~~ln 288 (323)
.++++|+ ++..+...+|.++|+.||.| +|+.+. + ..|||.|.+.+.|. +.+++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-d--t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-D--TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-S--SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-C--CeEEEEECCHHHHHHHHHHHH
Confidence 4567777 89999999999999999965 445454 2 58999999999998 66664
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=82.57 E-value=2.4 Score=32.27 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=46.8
Q ss_pred ceEEEeCCCCCCchHHHHHHhhcCCCceE-EEecc------------CCC---CCCceEEEEEccHHHHHHHHHHhC---
Q 020632 69 RTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRS------------STQ---NSQPFAFAVFSDQQSALGAMYALN--- 129 (323)
Q Consensus 69 ~tlfV~nLp~~~~e~~L~~~F~~~G~v~~-~~~~~------------~~~---~~~g~aFV~f~~~~~A~~A~~~l~--- 129 (323)
..|.|=+.|.+.. ..+.+.|++||.|.. ..+.. +.. .+..+-.|+|.+..+|++||..-.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 5666778866654 567788999999643 22211 000 134588999999999999987765
Q ss_pred CCCeEEEEEc
Q 020632 130 KGSTLYIDLA 139 (323)
Q Consensus 130 ~g~~l~v~~a 139 (323)
.|..|-|...
T Consensus 87 ~G~mIGV~Py 96 (132)
T 3p3d_A 87 NGVLLGVIPY 96 (132)
T ss_dssp TTEECEEEEC
T ss_pred CcEEEEEEEC
Confidence 6655566555
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=80.36 E-value=5.9 Score=26.63 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=44.1
Q ss_pred eEEEcCCC--CCCCHHHHHHHhhcCCC-----eEEEEEecCCCCCeEEEEecCchhhH-HHhhCCceeccCCCCceEEEE
Q 020632 233 TLFVANLG--PTCTEQELTQVFSKCPG-----FLKLKIQSTYGPPVAFVDFQVTCVCV-CHILFSLLFKEKLSDGISSNW 304 (323)
Q Consensus 233 tLfV~nLp--~~~te~~L~~~F~~fG~-----i~~v~i~~~~~~g~aFV~F~~~~~A~-~~~lnG~~l~g~~g~~l~V~~ 304 (323)
+|||. +. ..++.-+|..++..-++ |-.+++.. .|.||+-....... +..|++..+.+ +.++|+.
T Consensus 2 ~~~i~-~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~~~~~~~~~~l~~~~i~g---~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFN-GGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILNGKGPHVLKVMKNTTVKG---KQLKVNK 73 (76)
T ss_dssp EEEES-CCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECTTCHHHHHHHHTTCCC------CCCEEE
T ss_pred EEEEe-CCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECHHHHHHHHHHhccccCcC---ceEEEEE
Confidence 45653 33 45666778887776555 45566654 69999998877777 99999999966 8999987
Q ss_pred cC
Q 020632 305 DQ 306 (323)
Q Consensus 305 ak 306 (323)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 404
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.50 E-value=2.2 Score=33.31 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecC
Q 020632 245 EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQV 278 (323)
Q Consensus 245 e~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~ 278 (323)
++|+.++|...|.|+... ..+||+||+-.+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~~ 30 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFN----VRMGFGFLSMTA 30 (148)
T ss_dssp -----CCEEEEEEEEEEE----TTTTEEEEEEEE
T ss_pred CCcccccccceeEEEEEE----CCCCeeEEeeCc
Confidence 356778888888776554 345999999874
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.29 E-value=44 Score=26.54 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=38.1
Q ss_pred eEEEeCCCC-C--------CchHHHHHHh--hcCCCceEEEeccCCCCCCceEEEEEccHHHH-HHHHHH
Q 020632 70 TLFVAGLPE-D--------VKPREIYNLF--REFPGYESSHLRSSTQNSQPFAFAVFSDQQSA-LGAMYA 127 (323)
Q Consensus 70 tlfV~nLp~-~--------~~e~~L~~~F--~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A-~~A~~~ 127 (323)
++.|-|++. . ....+|++.| +.|.++....+-. ...+.|++.|.|.+--.. ..|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~-~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWN-YLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEEC-SSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEeccc-CCCCceeEEEEecCChHHHHHHHHH
Confidence 455777776 2 3446899977 9999977655553 334778999999876543 334433
No 406
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=39.21 E-value=13 Score=20.18 Aligned_cols=20 Identities=40% Similarity=0.703 Sum_probs=13.6
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhh
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFR 90 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~ 90 (323)
...|||||++- .++|+.+=+
T Consensus 3 gqvrtiwvggt-----peelkklke 22 (36)
T 2ki0_A 3 GQVRTIWVGGT-----PEELKKLKE 22 (36)
T ss_dssp CSCCCCCBCCC-----HHHHHHHHH
T ss_pred ceeEEEEecCC-----HHHHHHHHH
Confidence 35699999985 456665543
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.41 E-value=38 Score=26.92 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=34.1
Q ss_pred EEEcCCCC-C--------CCHHHHHHHh--hcCCCeEEEEEec-CCCCCeEEEEecCchhh
Q 020632 234 LFVANLGP-T--------CTEQELTQVF--SKCPGFLKLKIQS-TYGPPVAFVDFQVTCVC 282 (323)
Q Consensus 234 LfV~nLp~-~--------~te~~L~~~F--~~fG~i~~v~i~~-~~~~g~aFV~F~~~~~A 282 (323)
+.|-|++. . .+..+|++.| +.|..++..-+.. .+..|+|.|.|.+--.-
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHH
Confidence 56778875 2 3457899977 9999977555532 23457999999886443
No 408
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=35.57 E-value=40 Score=26.04 Aligned_cols=41 Identities=7% Similarity=-0.112 Sum_probs=25.0
Q ss_pred EEEecCCCCCeEEEEecCc-hhhH--HHhhCCceeccCCCCceEEEEc
Q 020632 261 LKIQSTYGPPVAFVDFQVT-CVCV--CHILFSLLFKEKLSDGISSNWD 305 (323)
Q Consensus 261 v~i~~~~~~g~aFV~F~~~-~~A~--~~~lnG~~l~g~~g~~l~V~~a 305 (323)
|+... ..||||||+-++- ++.- +.++.|..... .+-+|+|.
T Consensus 67 VKwFn-~~KGfGFI~~ddGg~DVFVH~Sai~~~~~L~---eGq~V~Fe 110 (147)
T 3aqq_A 67 CKCFC-RSKGHGFITPADGGPDIFLHISDVEGEYVPV---EGDEVTYK 110 (147)
T ss_dssp EEEEE-TTTTEEEEEESSSCSCEEEEGGGEESSBCCC---TTCEEEEE
T ss_pred EEEEe-CCCCeEEeccCCCCccEEEEeeeecCCCcCC---CCCEEEEE
Confidence 34343 3459999999875 4444 77777653222 45566665
No 409
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=34.24 E-value=65 Score=23.31 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcC-------CC-eEEEEE---------ecCCCCC-eEEEEecC-chhhH-----HHhhCC
Q 020632 234 LFVANLGPTCTEQELTQVFSKC-------PG-FLKLKI---------QSTYGPP-VAFVDFQV-TCVCV-----CHILFS 289 (323)
Q Consensus 234 LfV~nLp~~~te~~L~~~F~~f-------G~-i~~v~i---------~~~~~~g-~aFV~F~~-~~~A~-----~~~lnG 289 (323)
+|| |.++++++++..+..+| |+ |..+.. +.+.++| |.++.|.. ..++. ...+|-
T Consensus 13 ~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~eler~lr~~e 90 (110)
T 2j5a_A 13 VFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLKIDE 90 (110)
T ss_dssp EEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHHHHHCT
T ss_pred EEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHHHHhCCCc
Confidence 455 36678888877666654 43 445443 2223334 78889977 55544 567788
Q ss_pred ceeccCCCCceEEEEc
Q 020632 290 LLFKEKLSDGISSNWD 305 (323)
Q Consensus 290 ~~l~g~~g~~l~V~~a 305 (323)
..| |-|.|...
T Consensus 91 ~Vl-----R~livk~~ 101 (110)
T 2j5a_A 91 DVI-----RWLNIQIK 101 (110)
T ss_dssp TEE-----EEEEEEEC
T ss_pred CeE-----EEEEEEcc
Confidence 888 77777654
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=32.12 E-value=1.3e+02 Score=20.96 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=51.1
Q ss_pred CCcceEEEeCCCCCCchHHHHHHhhcCCCceEEEeccCCCCCCceEEEEEccHHHHHHHHHHhC--CCCeEEEEE
Q 020632 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDL 138 (323)
Q Consensus 66 ~~~~tlfV~nLp~~~~e~~L~~~F~~~G~v~~~~~~~~~~~~~g~aFV~f~~~~~A~~A~~~l~--~g~~l~v~~ 138 (323)
..++-+-|-|+|..+-..|+.-.....|---.+... +++ |.+.|.+.++-..|+..|- ....|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-dgq-----amirfqnsdeqrlaiqkllnhnnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-DGQ-----AMIRFQNSDEQRLAIQKLLNHNNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-SSC-----EEEEESSHHHHHHHHHHHEETTTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-cCe-----eEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 345888999999999999998888888753334333 233 9999999999988887764 667777764
No 411
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=27.68 E-value=73 Score=22.60 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHhhcC-------CC-eEEEEE---------ecCCCCC-eEEEEecCchhhH-----HHhhCCceeccC
Q 020632 239 LGPTCTEQELTQVFSKC-------PG-FLKLKI---------QSTYGPP-VAFVDFQVTCVCV-----CHILFSLLFKEK 295 (323)
Q Consensus 239 Lp~~~te~~L~~~F~~f-------G~-i~~v~i---------~~~~~~g-~aFV~F~~~~~A~-----~~~lnG~~l~g~ 295 (323)
|.++++++++..+..+| |+ |..+.. +.+.++| |.++.|....++. ...+|-..|
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~~~~Vl--- 86 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVR--- 86 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHHTSTTEE---
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHHHhcCCcceE---
Confidence 35677888887766664 44 555443 2222233 8888998776665 556777777
Q ss_pred CCCceEEEEc
Q 020632 296 LSDGISSNWD 305 (323)
Q Consensus 296 ~g~~l~V~~a 305 (323)
|-|.|...
T Consensus 87 --R~l~vk~~ 94 (101)
T 1cqm_A 87 --RVMVVKSQ 94 (101)
T ss_dssp --EEEEEECS
T ss_pred --EEEEEEec
Confidence 66666543
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.06 E-value=1.7e+02 Score=20.37 Aligned_cols=49 Identities=10% Similarity=-0.028 Sum_probs=39.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchhhH
Q 020632 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCVCV 283 (323)
Q Consensus 231 ~~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~A~ 283 (323)
++-|-|-|+|..+-..++--.....|---.|..+. |.|.|.|.+.++..
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqr 60 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQR 60 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHH
Confidence 56688999999998888877777777656777776 79999999988776
No 413
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=24.45 E-value=1e+02 Score=20.53 Aligned_cols=22 Identities=9% Similarity=-0.041 Sum_probs=15.8
Q ss_pred CCCCeEEEEecCchhhH--HHhhC
Q 020632 267 YGPPVAFVDFQVTCVCV--CHILF 288 (323)
Q Consensus 267 ~~~g~aFV~F~~~~~A~--~~~ln 288 (323)
..||||||+=++-++.- +.+|.
T Consensus 10 ~~KGfGFI~~~dG~DvFvH~s~i~ 33 (74)
T 2kcm_A 10 AAKKYGFIQGDDGESYFLHFSELL 33 (74)
T ss_dssp TTTTEEEEEETTSCEECCCGGGSS
T ss_pred CCCCEEEEecCCCceEEEEhhhcc
Confidence 34599999988764444 77776
No 414
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=23.80 E-value=65 Score=24.35 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=31.5
Q ss_pred EEcCCCCCCCHHHHHHHhh-cCC--CeEEEEEe-------------c-CCCCCeEEEEecCc
Q 020632 235 FVANLGPTCTEQELTQVFS-KCP--GFLKLKIQ-------------S-TYGPPVAFVDFQVT 279 (323)
Q Consensus 235 fV~nLp~~~te~~L~~~F~-~fG--~i~~v~i~-------------~-~~~~g~aFV~F~~~ 279 (323)
+|.++...++++++++++. .++ .|..+++- . +++-+|-|+.|.|-
T Consensus 67 ~v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 67 LSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 4888999999999999995 455 46666661 1 22335778888764
No 415
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.53 E-value=1.8e+02 Score=19.10 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=21.9
Q ss_pred CCCCeEEEEecCchhhH--HHhhCCc---eeccCCCCceEEEEc
Q 020632 267 YGPPVAFVDFQVTCVCV--CHILFSL---LFKEKLSDGISSNWD 305 (323)
Q Consensus 267 ~~~g~aFV~F~~~~~A~--~~~lnG~---~l~g~~g~~l~V~~a 305 (323)
..+|||||+-++-++.- +.+|.+. .|. ..-+|+|.
T Consensus 11 ~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~----~G~~V~f~ 50 (73)
T 3a0j_A 11 AEKGYGFIEREGDTDVFVHYTAINAKGFRTLN----EGDIVTFD 50 (73)
T ss_dssp TTTTEEEEECTTSCCEEEEGGGBCSSSCSSCC----TTCEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEhhhccccCCCCCC----CCCEEEEE
Confidence 34599999987764444 7777764 332 34455654
No 416
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=21.12 E-value=1.3e+02 Score=19.41 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=21.4
Q ss_pred CCCCeEEEEecCchhhH--HHhhCCc---eeccCCCCceEEEEc
Q 020632 267 YGPPVAFVDFQVTCVCV--CHILFSL---LFKEKLSDGISSNWD 305 (323)
Q Consensus 267 ~~~g~aFV~F~~~~~A~--~~~lnG~---~l~g~~g~~l~V~~a 305 (323)
..+|||||+=++-++.- +.++.+. .|. ..-+|+|.
T Consensus 10 ~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~----~G~~V~f~ 49 (66)
T 1g6p_A 10 SKKGYGFITKDEGGDVFVHWSAIEMEGFKTLK----EGQVVEFE 49 (66)
T ss_dssp TTTTEEEEEETTSCBCBBCSSSSCCSSCCCCC----SSSEEEEE
T ss_pred CCCCEEEEecCCCceEEEEhHHccccCCCCCC----CCCEEEEE
Confidence 34599999988654444 6666653 342 34556664
No 417
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=20.57 E-value=1.5e+02 Score=19.02 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=22.5
Q ss_pred CCCCeEEEEecCchhhH--HHhhCCce---eccCCCCceEEEEcC
Q 020632 267 YGPPVAFVDFQVTCVCV--CHILFSLL---FKEKLSDGISSNWDQ 306 (323)
Q Consensus 267 ~~~g~aFV~F~~~~~A~--~~~lnG~~---l~g~~g~~l~V~~ak 306 (323)
..+|||||+=++-++.- +.++.+.- |. ..-+|+|.-
T Consensus 11 ~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~l~----~G~~V~f~~ 51 (66)
T 1c9o_A 11 NEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLE----EGQEVSFEI 51 (66)
T ss_dssp TTTTEEEEEETTEEEEEEEGGGBCSSSCCCCC----TTCEEEEEE
T ss_pred CCCCeEEEecCCCccEEEEHHHccccCCCCCC----CCCEEEEEE
Confidence 34599999987764443 77777542 32 355566653
No 418
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.46 E-value=36 Score=22.33 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=14.2
Q ss_pred CCeEEEEEecCCCCCeEEEEecCchh
Q 020632 256 PGFLKLKIQSTYGPPVAFVDFQVTCV 281 (323)
Q Consensus 256 G~i~~v~i~~~~~~g~aFV~F~~~~~ 281 (323)
|.|++|. ..+..+||.|+|-..
T Consensus 28 GtV~kV~----~~~~~ClV~FeD~s~ 49 (68)
T 2e5p_A 28 GTIKKVD----SAREVCLVQFEDDSQ 49 (68)
T ss_dssp EEEEEEE----TTTTEEEEEETTTEE
T ss_pred eEEEEEe----cCCcEEEEEEccCCe
Confidence 4455554 234799999988544
No 419
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.32 E-value=1.6e+02 Score=18.01 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=37.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEecCCCCCeEEEEecCchh
Q 020632 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQVTCV 281 (323)
Q Consensus 232 ~tLfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~~~~~g~aFV~F~~~~~ 281 (323)
.++.|.|+.-.--...++..+....+|..+.+.-.. +-+.|.|.+..+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~ 51 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL--EQAVVSYHGETT 51 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEECTTCC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC--CEEEEEECCCCC
Confidence 458899998766678899999999999998886533 678899854333
No 420
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.10 E-value=65 Score=18.38 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHHhhcC
Q 020632 240 GPTCTEQELTQVFSKC 255 (323)
Q Consensus 240 p~~~te~~L~~~F~~f 255 (323)
-.++|.++|+.+|.+.
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3477899999999875
Done!