BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020633
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 127/272 (46%), Gaps = 22/272 (8%)
Query: 55 KATVYMTHGYGSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS 114
KA ++++HG G +G ++++ VFA D +GHG+S+G R + D
Sbjct: 59 KALIFVSHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDV 117
Query: 115 LSFFKHVRDSEPYRDLPGFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI-PENMK 173
L ++ Y LP FL G SMGGA +L + P + G++ +PL + PE+
Sbjct: 118 LQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAE-RPGHFAGMVLISPLVLANPESAT 174
Query: 174 PSK------LHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRV 227
K L+L + L G D+ + + NK ++ + S+P +V
Sbjct: 175 TFKVLAAKVLNLVLPNLSLGPIDS-SVLSRNK---------TEVDIYNSDPLICRAGLKV 224
Query: 228 GTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGM 287
++ ++ K+TVPFL + G+AD + + LL E A S DK++KIY+G
Sbjct: 225 CFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGA 284
Query: 288 YHSLIQGEPDENANLVLKDMREWIDERVERYG 319
YH L + P E N V ++ W+ +R G
Sbjct: 285 YHVLHKELP-EVTNSVFHEINMWVSQRTATAG 315
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 127/272 (46%), Gaps = 22/272 (8%)
Query: 55 KATVYMTHGYGSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS 114
KA ++++HG G +G ++++ VFA D +GHG+S+G R + D
Sbjct: 60 KALIFVSHGAGEHSG-RYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDV 118
Query: 115 LSFFKHVRDSEPYRDLPGFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI-PENMK 173
L ++ Y LP FL G SMGGA +L + P + G++ +PL + PE+
Sbjct: 119 LQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAE-RPGHFAGMVLISPLVLANPESAT 175
Query: 174 PSK------LHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRV 227
K L+L + L G D+ + + NK ++ + S+P +V
Sbjct: 176 TFKVLAAKVLNLVLPNLSLGPIDS-SVLSRNKT---------EVDIYNSDPLICRAGLKV 225
Query: 228 GTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGM 287
++ ++ K+TVPFL + G+AD + + LL E A S DK++KIY+G
Sbjct: 226 CFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGA 285
Query: 288 YHSLIQGEPDENANLVLKDMREWIDERVERYG 319
YH L + P E N V ++ W+ +R G
Sbjct: 286 YHVLHKELP-EVTNSVFHEINMWVSQRTATAG 316
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 12/267 (4%)
Query: 55 KATVYMTHGYGSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS 114
KA ++++HG G +G ++++ VFA D +GHG+S+G R + D
Sbjct: 42 KALIFVSHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDV 100
Query: 115 LSFFKHVRDSEP-YRDLPGFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI-PENM 172
L +HV + Y LP FL G SMGGA +L + P + G++ +PL + PE+
Sbjct: 101 L---QHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAE-RPGHFAGMVLISPLVLANPESA 156
Query: 173 KPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMRE 232
K+ +L + ++ P + V ++ ++ + S+P +V +
Sbjct: 157 TTFKV--LAAKVLNSVLPNLSSGPIDSSVLS--RNKTEVDIYNSDPLICRAGLKVCFGIQ 212
Query: 233 IARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLI 292
+ ++ K+TVPFL + G+AD + + LL E A S DK++KIY+G YH L
Sbjct: 213 LLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKSQDKTLKIYEGAYHVLH 272
Query: 293 QGEPDENANLVLKDMREWIDERVERYG 319
+ P E N V ++ W+ +R G
Sbjct: 273 KELP-EVTNSVFHEINMWVSQRTATAG 298
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 127/273 (46%), Gaps = 24/273 (8%)
Query: 55 KATVYMTHGYGSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS 114
KA ++++HG G +G ++++ VFA D +GHG+S+G R + D
Sbjct: 59 KALIFVSHGAGEHSG-RYEELARXLXGLDLLVFAHDHVGHGQSEGERXVVSDFHVFVRDV 117
Query: 115 LSFFKHVRDSEP-YRDLPGFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVI-PENM 172
L +HV + Y LP FL G S GGA +L + P + G + +PL + PE+
Sbjct: 118 L---QHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAE-RPGHFAGXVLISPLVLANPESA 173
Query: 173 KPSK------LHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPR 226
K L+L + L G D+ + + NK ++ + S+P +
Sbjct: 174 TTFKVLAAKVLNLVLPNLSLGPIDS-SVLSRNKT---------EVDIYNSDPLICRAGLK 223
Query: 227 VGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDG 286
V ++ ++ K+TVPFL + G+AD + + LL E A S DK++KIY+G
Sbjct: 224 VCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLXELAKSQDKTLKIYEG 283
Query: 287 MYHSLIQGEPDENANLVLKDMREWIDERVERYG 319
YH L + P E N V ++ W+ +R G
Sbjct: 284 AYHVLHKELP-EVTNSVFHEINXWVSQRTATAG 315
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 57 TVYMTHGYGSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAA-SSL 115
V HG + G +Q++ + A GY V A DL GHGRS +E V + SSL
Sbjct: 28 VVLCIHGI-LEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSS-------HLEMVTSYSSL 79
Query: 116 SFFKHV-RDSEPYRDLPGFLFGESMGG 141
+F + R + D P L G SMG
Sbjct: 80 TFLAQIDRVIQELPDQPLLLVGHSMGA 106
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 35/237 (14%)
Query: 79 FATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRDSEPYRDLPGFL-FGE 137
F + GY V A D GHGRSD DM+ AA + + + DL G + G
Sbjct: 44 FLSHGYRVIAHDRRGHGRSDQPSTG-HDMDTYAADVAALTEAL-------DLRGAVHIGH 95
Query: 138 SMGGAATMLMYFQSEPNTWTG--LIFSAPLFVIPENMKPSKLHL-----FMYGLLFGLAD 190
S GG ++EP L+ + P ++ + P L L F L A
Sbjct: 96 STGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEFRAALAANRAQ 155
Query: 191 TWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMRE----IARVCQY-IQDNFS 245
+ +P G + E V + + +G IA + D+
Sbjct: 156 FYIDVPSGPFYG---FNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLK 212
Query: 246 KVTVPFLTVHGTADGVT-----CPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPD 297
++ VP L HGT D V P S++LL A+ ++K Y+G+ H ++ P+
Sbjct: 213 RIDVPVLVAHGTDDQVVPYADAAPKSAELL------ANATLKSYEGLPHGMLSTHPE 263
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 107/274 (39%), Gaps = 55/274 (20%)
Query: 58 VYMTHGY--GSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLG-DMEKVAASS 114
+ +HG+ +D+ W Q I + A GY V A D GHGRS + + G DM+ A
Sbjct: 22 IVFSHGWPLNADS-WESQMIFL--AAQGYRVIAHDRRGHGRSS--QPWSGNDMDTYADDL 76
Query: 115 LSFFKHVRDSEPYRDLPGFLFGESMGGA--ATMLMYFQSEPNTWTGLIFSAPLFVIPENM 172
+H+ RD LFG S GG A + + GLI + P ++
Sbjct: 77 AQLIEHL----DLRD--AVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEA 130
Query: 173 KPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKL-KVIASNPRRYTGKP------ 225
P L + ++ + + ++ D +L K +AS P +P
Sbjct: 131 NPGGLPMEVF---------------DGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSA 175
Query: 226 -----------RVGTMREIARVCQYIQDNFS----KVTVPFLTVHGTADGVTCPTSSKLL 270
G + + + +F+ K+ VP L VHG AD V P + +
Sbjct: 176 GMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDADQV-VPIEASGI 234
Query: 271 YEKASSADKSIKIYDGMYHSLIQGEPDE-NANLV 303
A ++KIY G H L D+ NA+L+
Sbjct: 235 ASAALVKGSTLKIYSGAPHGLTDTHKDQLNADLL 268
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 83 GYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLSFFKHVRDSEPYRDLPGFLFGESMGGA 142
G A AD+ GHG+SDG + + K + L+ + + + D+ ++ G S GG
Sbjct: 56 GVATLRADMYGHGKSDG-KFEDHTLFKWLTNILAVVDYAKKLDFVTDI--YMAGHSQGGL 112
Query: 143 ATMLMYFQSEPNTWTGLIFSAPLFVIPENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVG 202
+ ML E + LI +P +IPE + +L GL F
Sbjct: 113 SVMLAA-AMERDIIKALIPLSPAAMIPEIARTGEL----LGLKF---------------- 151
Query: 203 KAIKDPEKLKVIASNPRRYTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVT 262
DPE I + G+ G +A+ + ++D K T P L VHG D
Sbjct: 152 ----DPEN---IPDELDAWDGRKLKGNYVRVAQTIR-VEDFVDKYTKPVLIVHGDQDEAV 203
Query: 263 CPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWIDERVER 317
P + + + K K + I G H D + LV + ++E++ E++ +
Sbjct: 204 -PYEASVAFSKQYKNCKLVTI-PGDTHCY-----DHHLELVTEAVKEFMLEQIAK 251
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 94/238 (39%), Gaps = 38/238 (15%)
Query: 58 VYMTHGY-GSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLS 116
V ++HG+ GS F + FA GY V L GHG + ++AAS+ S
Sbjct: 54 VLVSHGFTGSPQSMRF--LAEGFARAGYTVATPRLTGHGTTPA---------EMAASTAS 102
Query: 117 -----FFKHVRDSEPYRDLPGFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPEN 171
+R E D+ F+ G SMGGA T+ Q P + G ++P N
Sbjct: 103 DWTADIVAAMRWLEERCDVL-FMTGLSMGGALTVWAAGQF-PERFAG--------IMPIN 152
Query: 172 MKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMR 231
+ L F D A +P +G IK E +K +A T P + +
Sbjct: 153 AALRMESPDLAALAFN-PDAPAELPG---IGSDIKA-EGVKELAYP---VTPVPAIKHLI 204
Query: 232 EIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYH 289
I V + + +V P L + D V P + +L+Y S +K + + YH
Sbjct: 205 TIGAVAEML---LPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYH 259
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 94/238 (39%), Gaps = 38/238 (15%)
Query: 58 VYMTHGY-GSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASSLS 116
V ++HG+ GS F + FA GY V L GHG + ++AAS+ S
Sbjct: 52 VLVSHGFTGSPQSMRF--LAEGFARAGYTVATPRLTGHGTTPA---------EMAASTAS 100
Query: 117 -----FFKHVRDSEPYRDLPGFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIPEN 171
+R E D+ F+ G SMGGA T+ Q P + G ++P N
Sbjct: 101 DWTADIVAAMRWLEERCDVL-FMTGLSMGGALTVWAAGQF-PERFAG--------IMPIN 150
Query: 172 MKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNPRRYTGKPRVGTMR 231
+ L F D A +P +G IK E +K +A T P + +
Sbjct: 151 AALRMESPDLAALAFN-PDAPAELPG---IGSDIKA-EGVKELAYP---VTPVPAIKHLI 202
Query: 232 EIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKSIKIYDGMYH 289
I V + + +V P L + D V P + +L+Y S +K + + YH
Sbjct: 203 TIGAVAEML---LPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYH 257
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 110/285 (38%), Gaps = 35/285 (12%)
Query: 41 KLFTQSFLPLDQKVKATVYMTHGYG-SDTGWMFQKICISFATWGYAVFAADLLGHGRSDG 99
++F + + P D KV ++ HG+ S W Q + F G+ V A D GHGRS
Sbjct: 15 EIFYKDWGPRDAKV---IHFHHGWPLSSDDWDAQ--LLFFVNKGFRVVAHDRRGHGRSS- 68
Query: 100 IRCYLG-DMEKVAASSLSFFKHVRDSEPYRDLPGFLFGESMGGAATM-LMYFQSEPNTWT 157
+ + G DM+ A + + E G S GG + + E N
Sbjct: 69 -QVWDGHDMDHYADDAAAVV------EKLGTHGAMHVGHSTGGGEVVRYIARHGERNVSK 121
Query: 158 GLIFSA--PLFVI----PENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKL 211
++ S+ PL V P S F + A + +P G +
Sbjct: 122 AVLISSVPPLMVKTSSNPNGTPKSVFDDFQAHVAANRAQFYLDVPAGPFYGYNRPGAKPS 181
Query: 212 KVIASNPRRYTGKPRVGTMR-EIARVCQYIQDNFSK----VTVPFLTVHGTADGVTCPTS 266
+ + N R + +G+ + + + + Q +F+ +T+P L +HG D V
Sbjct: 182 EGVIYNWWR---QGMMGSTKAQYDGIVAFSQTDFTNDLKGITIPVLVIHGDDDQVVPYAD 238
Query: 267 SKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWI 311
S +L K K I Y G H G P +A+ V D+ E++
Sbjct: 239 SGVLSAKLVKNGKLI-TYKGAPH----GIPTTHADKVNADLLEFL 278
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 114/294 (38%), Gaps = 38/294 (12%)
Query: 34 YFETPNG-KLFTQSFLPLDQKVKATVYMTHGYG-SDTGWMFQKICISFATWGYAVFAADL 91
Y T +G ++F + + P D V ++ HG+ S W Q + F GY V A D
Sbjct: 3 YVTTKDGVQIFYKDWGPRDAPV---IHFHHGWPLSADDWDAQ--LLFFLAHGYRVVAHDR 57
Query: 92 LGHGRSDGIRCYLG-DMEKVAASSLSFFKHVRDSEPYRDLPGFLFGESMGGAATMLMYFQ 150
GHGRS + + G DM+ A + H+ G S GG ++ Y
Sbjct: 58 RGHGRSS--QVWDGHDMDHYADDVAAVVAHLGIQGAVH------VGHSTGG-GEVVRYMA 108
Query: 151 SEPNTWTG---LIFSAPLFVI-----PENMKPSKLHLFMYGLLFGLADTWAAMPDNKMVG 202
P LI + P ++ P + S F + A + +P G
Sbjct: 109 RHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQAQVASNRAQFYRDVPAGPFYG 168
Query: 203 KAIKDPEKLKVIASNPRRYTGKPRVGTMR-EIARVCQYIQDNFSK----VTVPFLTVHGT 257
E + I N R + +G+ + + + Q +F++ + P L +HG
Sbjct: 169 YNRPGVEASEGIIGNWWR---QGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVLVMHGD 225
Query: 258 ADGVTCPTSSKLLYEKASSADKSIKIYDGMYHSLIQGEPDENANLVLKDMREWI 311
D + +S +L K + ++K Y G H G P +A+++ D+ +I
Sbjct: 226 DDQIVPYENSGVLSAKLLP-NGALKTYKGYPH----GMPTTHADVINADLLAFI 274
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 55 KATVYMTHGYG-SDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCY---LGDMEKV 110
+ ++ + HGY + W + +++ GY V+A D G GRS Y GD++
Sbjct: 27 RRSIALFHGYSFTSXDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGDLKHA 86
Query: 111 AASSLSFFKHVRDSEPYRDLP-GFLFGESMGGAATMLMYFQSEPNTWTGLIFSAPLFVIP 169
A + +RD + + G S GG + Q P+ G+I AP +V
Sbjct: 87 A-------EFIRDYLKANGVARSVIXGASXGGGXVIXTTLQY-PDIVDGIIAVAPAWV-- 136
Query: 170 ENMK 173
E++K
Sbjct: 137 ESLK 140
>pdb|3FC3|A Chain A, Crystal Structure Of The Beta-Beta-Alpha-Me Type Ii
Restriction Endonuclease Hpy99i
pdb|3FC3|B Chain B, Crystal Structure Of The Beta-Beta-Alpha-Me Type Ii
Restriction Endonuclease Hpy99i
pdb|3GOX|A Chain A, Crystal Structure Of The Beta-Beta-Alpha-Me Type Ii
Restriction Endonuclease Hpy99i In The Absence Of Edta
pdb|3GOX|B Chain B, Crystal Structure Of The Beta-Beta-Alpha-Me Type Ii
Restriction Endonuclease Hpy99i In The Absence Of Edta
Length = 200
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 38 PNGKLFTQSFLPLDQKVKATVYMTHGYGSDTGWMFQKICISFAT 81
P G +FT V T + H + DTGW + IC S T
Sbjct: 133 PKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNT 176
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 33/263 (12%)
Query: 55 KATVYMTHGYGSDTGWMFQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS 114
KA++ G+G D ++ + +F + V D +G G SD +R Y D+ +
Sbjct: 20 KASIMFAPGFGCDQS-VWNAVAPAFEE-DHRVILFDYVGSGHSD-LRAY--DLNRYQTLD 74
Query: 115 LSFFKHVRDSEPYRDLPGFLF-GESMGGAATMLMYFQSEPNTWTGLIFSAP----LFVIP 169
+ + V D DL +F G S+G ML + P ++ L+ P L P
Sbjct: 75 -GYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIR-RPELFSHLVMVGPSPCYLNDPP 132
Query: 170 E------NMKPSKLHLFMYGLLFGLADTWAAMPDNKMVGKAIKDPEKLKVIASNP---RR 220
E + L M G A +AA N+ IK+ + + +++P R+
Sbjct: 133 EYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQ 192
Query: 221 YTGKPRVGTMREIARVCQYIQDNFSKVTVPFLTVHGTADGVTCPTSSKLLYEKASSADKS 280
+ RE + SKVTVP L + D + T K +++ + S
Sbjct: 193 FAKAAFFSDHRE----------DLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYS--S 240
Query: 281 IKIYDGMYHSLIQGEPDENANLV 303
+K + H PDE L+
Sbjct: 241 LKQMEARGHCPHMSHPDETIQLI 263
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 57 TVYMTHGYG-SDTGWM-FQKICISFATWGYAVFAADLLGHGRSDGIRCYLGDMEKVAASS 114
TV + HG G TGW F + GY V D G G+SD + G + A
Sbjct: 38 TVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSV-VNSGSRSDLNARI 96
Query: 115 LSFFKHVRDSEPYRDLPGFLFGESMGGAATM 145
L K V D + L G SMGG +++
Sbjct: 97 L---KSVVDQLDIAKI--HLLGNSMGGHSSV 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,707,769
Number of Sequences: 62578
Number of extensions: 459531
Number of successful extensions: 1012
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 17
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)