BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020634
         (323 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54XE8|GACP_DICDI Rho GTPase-activating protein gacP OS=Dictyostelium discoideum
           GN=gacP PE=3 SV=1
          Length = 576

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 16/226 (7%)

Query: 49  QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINE-NI 107
           ++++L + T  TKDF R L K  E  T      I+ GT+L+++   Y      N ++  I
Sbjct: 30  EMKELEKKTTETKDFLRKLTKSVEKETLSSGVSIQDGTELADNFLDYSVHVRDNQSDLVI 89

Query: 108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA 167
           L    +  G+ +   E  +   N  L + V DPL+++I    L+ A+   + Y R+R   
Sbjct: 90  LSGILSKIGEFQAGFEDLKSKLNSSLINDVSDPLKSIIK-TELKQAKESKREYDRVRVAF 148

Query: 168 ETQAVEVSK-RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH 226
           +    E++  R+Q+  + P      K+  +E   + L+ N   +G +    L        
Sbjct: 149 DAHLSELANLRKQKNVKPP------KIQESEEECERLRTNFERVGIDTTCLLRDTNVITE 202

Query: 227 RLTFQRLVAMVEG-----EKNYHLRIAAILGDV-EAEMVSEKQRKE 266
             T ++L   ++      +K Y   +A ++ D+ E  +  EK++ E
Sbjct: 203 FETVEKLCDYLDSYHTFFQKGYRW-LAQMIPDIYEYRLYVEKRKAE 247


>sp|Q49XE1|SBCC_STAS1 Nuclease SbcCD subunit C OS=Staphylococcus saprophyticus subsp.
           saprophyticus (strain ATCC 15305 / DSM 20229) GN=sbcC
           PE=3 SV=1
          Length = 1009

 Score = 34.7 bits (78), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 28/182 (15%)

Query: 12  KEQVAKQQQAVIKQF-SASGYERSDVMV------------IDEVEMQRHQQLEKLYRSTR 58
           KE + K+ +  I  F + +GY+R D  +             D+   +  Q+++  Y+ST 
Sbjct: 633 KEHILKENETAINDFENTTGYKRVDEFLTKFEDAYNQIRQFDQTLNEIEQKIQN-YKSTL 691

Query: 59  GTKDFQRDLVK--VAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYG 116
             +      +K  +AE+ T I     E   K++E+  R G  + + + E +  +A+    
Sbjct: 692 AIEKNSVTYLKNNLAEIETEIN----ETDMKINEEMQRIGFTSIEQV-EKVTAQASE--- 743

Query: 117 DARKHVEKEQEDFNRLLSSQVL--DPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEV 174
             ++++EKE E F +   S  L    L+A      L+D + L +R+  M+Q  ET + E+
Sbjct: 744 --KQNLEKEIETFKKEKQSYELYIAQLKAETNNKKLDDTQQLKERFEEMQQVYETASTEL 801

Query: 175 SK 176
           S+
Sbjct: 802 SQ 803


>sp|A9L9D9|YCF2_LEMMI Protein ycf2 OS=Lemna minor GN=ycf2-A PE=3 SV=1
          Length = 2311

 Score = 34.3 bits (77), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 98   ENNQNINENILPKAAAIYGDARKHVEKEQEDFNR---LLSSQVLDPLRAMITGA-PLEDA 153
            EN+ ++   +L    A+ G +RK  +  Q D NR   LL S+  +PL  M  G+  + D 
Sbjct: 2006 ENDSDLVHGLLEVEGALVGFSRKEKDCSQFDNNRVTLLLRSEPRNPLDMMQNGSCSIVDQ 2065

Query: 154  RHLAQRYSRMRQEAE 168
            R L ++Y    +E E
Sbjct: 2066 RFLYEKYESEFEEGE 2080


>sp|B5EFP4|RPOC_GEOBB DNA-directed RNA polymerase subunit beta' OS=Geobacter bemidjiensis
            (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rpoC PE=3
            SV=1
          Length = 1382

 Score = 32.3 bits (72), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 34   SDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTA 76
            S++ V++E+E+     + K+ R T  TKD    L +VAE+F A
Sbjct: 1093 SNINVLEEIEVNAGDVIAKIPRETTKTKDITGGLPRVAELFEA 1135


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,559,715
Number of Sequences: 539616
Number of extensions: 3989599
Number of successful extensions: 19115
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 18876
Number of HSP's gapped (non-prelim): 466
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)