Query 020634
Match_columns 323
No_of_seqs 50 out of 52
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 03:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07607 BAR_SH3P_plant The Bin 100.0 2E-119 4E-124 805.3 22.5 208 48-257 1-209 (209)
2 cd07307 BAR The Bin/Amphiphysi 99.5 1.5E-11 3.3E-16 97.9 18.4 189 59-255 4-192 (194)
3 PF03114 BAR: BAR domain; Int 99.2 1.6E-08 3.4E-13 83.8 20.8 219 13-258 3-228 (229)
4 smart00721 BAR BAR domain. 98.7 2E-05 4.4E-10 67.6 22.9 227 14-258 5-237 (239)
5 cd07604 BAR_ASAPs The Bin/Amph 97.7 0.0053 1.2E-07 56.0 17.6 181 69-258 23-212 (215)
6 PF14604 SH3_9: Variant SH3 do 97.5 7.2E-05 1.6E-09 53.1 3.1 33 288-320 1-33 (49)
7 PF00018 SH3_1: SH3 domain; I 97.5 7.1E-05 1.5E-09 52.0 2.9 33 287-319 1-33 (48)
8 smart00326 SH3 Src homology 3 97.5 7.7E-05 1.7E-09 49.8 2.9 37 284-320 3-39 (58)
9 KOG1118 Lysophosphatidic acid 97.5 0.011 2.3E-07 58.4 17.7 281 12-322 2-345 (366)
10 cd00174 SH3 Src homology 3 dom 97.4 0.0001 2.3E-09 48.9 2.7 35 286-320 2-36 (54)
11 cd07595 BAR_RhoGAP_Rich-like T 97.4 0.025 5.4E-07 52.5 19.0 161 87-259 61-225 (244)
12 cd07639 BAR_ACAP1 The Bin/Amph 97.4 0.012 2.7E-07 53.6 16.5 179 65-255 19-197 (200)
13 cd07594 BAR_Endophilin_B The B 97.3 0.078 1.7E-06 49.2 19.9 185 47-257 19-228 (229)
14 cd07616 BAR_Endophilin_B1 The 97.2 0.029 6.2E-07 52.3 16.2 184 47-257 19-228 (229)
15 cd07603 BAR_ACAPs The Bin/Amph 97.1 0.082 1.8E-06 47.7 18.2 182 62-255 16-197 (200)
16 cd07619 BAR_Rich2 The Bin/Amph 97.1 0.053 1.1E-06 51.2 17.5 198 47-261 17-231 (248)
17 cd07606 BAR_SFC_plant The Bin/ 97.1 0.044 9.5E-07 49.8 16.3 183 47-255 14-200 (202)
18 cd07592 BAR_Endophilin_A The B 97.1 0.056 1.2E-06 49.8 16.9 150 86-259 67-217 (223)
19 cd07634 BAR_GAP10-like The Bin 97.0 0.058 1.3E-06 49.7 16.4 185 63-255 17-204 (207)
20 cd07637 BAR_ACAP3 The Bin/Amph 97.0 0.088 1.9E-06 47.8 17.1 143 104-255 55-197 (200)
21 cd07602 BAR_RhoGAP_OPHN1-like 96.9 0.076 1.6E-06 48.9 16.6 184 64-255 18-204 (207)
22 cd07600 BAR_Gvp36 The Bin/Amph 96.9 0.069 1.5E-06 49.8 16.2 222 13-257 11-241 (242)
23 cd07593 BAR_MUG137_fungi The B 96.9 0.15 3.2E-06 46.9 17.9 152 85-257 53-207 (215)
24 cd07613 BAR_Endophilin_A1 The 96.8 0.085 1.8E-06 49.1 16.1 146 86-259 67-217 (223)
25 cd07617 BAR_Endophilin_B2 The 96.5 0.19 4E-06 46.9 16.0 183 47-257 19-219 (220)
26 cd07638 BAR_ACAP2 The Bin/Amph 96.5 0.47 1E-05 43.4 18.0 182 48-255 16-197 (200)
27 cd07618 BAR_Rich1 The Bin/Amph 96.4 0.37 8E-06 45.4 17.2 194 47-261 17-229 (246)
28 PF07653 SH3_2: Variant SH3 do 96.3 0.0043 9.3E-08 44.2 3.2 35 285-319 1-36 (55)
29 cd07615 BAR_Endophilin_A3 The 96.3 0.36 7.8E-06 45.0 16.4 147 87-259 68-217 (223)
30 cd07636 BAR_GRAF The Bin/Amphi 96.2 0.4 8.6E-06 44.3 16.1 186 61-255 15-204 (207)
31 cd07590 BAR_Bin3 The Bin/Amphi 95.6 1.9 4.1E-05 40.1 18.7 197 33-258 8-212 (225)
32 cd07635 BAR_GRAF2 The Bin/Amph 95.6 1.2 2.5E-05 41.3 16.5 140 108-255 65-204 (207)
33 cd07614 BAR_Endophilin_A2 The 95.4 2 4.4E-05 40.0 17.6 184 47-259 9-217 (223)
34 cd07588 BAR_Amphiphysin The Bi 94.5 3.8 8.2E-05 37.7 18.6 174 59-259 27-207 (211)
35 cd07598 BAR_FAM92 The Bin/Amph 94.4 4 8.6E-05 37.4 19.5 171 67-258 23-202 (211)
36 cd07596 BAR_SNX The Bin/Amphip 94.1 3.1 6.7E-05 35.1 20.0 163 88-255 44-216 (218)
37 cd07601 BAR_APPL The Bin/Amphi 93.6 6.1 0.00013 36.7 16.6 146 104-256 59-205 (215)
38 KOG0162 Myosin class I heavy c 92.1 0.13 2.9E-06 55.8 3.6 35 286-320 1054-1088(1106)
39 cd07620 BAR_SH3BP1 The Bin/Amp 91.8 13 0.00028 35.9 17.9 159 88-267 62-246 (257)
40 cd07676 F-BAR_FBP17 The F-BAR 90.6 15 0.00032 34.4 17.0 118 50-170 7-147 (253)
41 KOG4225 Sorbin and SH3 domain- 90.2 0.17 3.7E-06 51.9 2.1 40 283-322 230-269 (489)
42 PF09325 Vps5: Vps5 C terminal 89.1 15 0.00032 32.1 17.1 148 106-255 78-234 (236)
43 KOG1029 Endocytic adaptor prot 86.5 0.57 1.2E-05 51.4 3.2 37 284-320 980-1016(1118)
44 PF10455 BAR_2: Bin/amphiphysi 84.3 43 0.00093 32.7 17.2 138 104-258 146-287 (289)
45 cd07631 BAR_APPL1 The Bin/Amph 82.4 45 0.00098 31.6 16.3 184 44-256 19-205 (215)
46 KOG4226 Adaptor protein NCK/Do 80.4 2.1 4.5E-05 42.6 4.0 75 245-319 62-143 (379)
47 KOG3523 Putative guanine nucle 79.0 0.67 1.5E-05 49.4 0.2 66 255-320 576-645 (695)
48 cd07605 I-BAR_IMD Inverse (I)- 77.1 64 0.0014 30.1 18.1 139 111-253 69-214 (223)
49 cd07633 BAR_OPHN1 The Bin/Amph 75.7 73 0.0016 30.1 15.8 107 63-170 17-126 (207)
50 PF04912 Dynamitin: Dynamitin 75.3 8.8 0.00019 37.4 6.6 34 151-184 87-120 (388)
51 KOG1702 Nebulin repeat protein 74.8 2.7 6E-05 40.2 3.0 32 287-318 211-242 (264)
52 cd07599 BAR_Rvs167p The Bin/Am 72.9 69 0.0015 28.5 14.3 139 48-212 23-170 (216)
53 PF08397 IMD: IRSp53/MIM homol 71.5 78 0.0017 28.5 18.3 193 48-257 10-207 (219)
54 KOG1029 Endocytic adaptor prot 70.9 2.6 5.7E-05 46.5 2.1 37 283-319 693-731 (1118)
55 cd07657 F-BAR_Fes_Fer The F-BA 67.7 1.1E+02 0.0023 28.6 16.9 153 83-256 37-212 (237)
56 cd07642 BAR_ASAP2 The Bin/Amph 64.3 1.3E+02 0.0029 28.5 17.1 177 74-258 28-212 (215)
57 cd07653 F-BAR_CIP4-like The F- 63.3 1.1E+02 0.0025 27.4 17.0 65 82-146 36-101 (251)
58 cd07612 BAR_Bin2 The Bin/Amphi 59.1 1.6E+02 0.0034 27.7 17.2 182 45-259 19-207 (211)
59 cd07654 F-BAR_FCHSD The F-BAR 59.1 1.7E+02 0.0036 27.9 14.5 28 119-146 79-106 (264)
60 PF14191 YodL: YodL-like 57.9 5.7 0.00012 33.3 1.4 30 288-320 61-98 (103)
61 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.0 1.2E+02 0.0026 25.5 9.1 80 152-231 18-99 (132)
62 KOG4225 Sorbin and SH3 domain- 52.6 10 0.00023 39.4 2.5 35 286-320 435-469 (489)
63 KOG4348 Adaptor protein CMS/SE 50.2 3.9 8.6E-05 42.8 -0.9 40 281-320 98-137 (627)
64 KOG4429 Uncharacterized conser 49.7 9.5 0.00021 38.4 1.6 36 284-319 364-399 (421)
65 KOG2199 Signal transducing ada 49.2 11 0.00024 39.0 2.0 32 287-318 219-251 (462)
66 cd07675 F-BAR_FNBP1L The F-BAR 48.6 2.5E+02 0.0055 26.9 18.2 148 82-256 36-213 (252)
67 cd07591 BAR_Rvs161p The Bin/Am 47.2 2.3E+02 0.0051 26.1 19.1 133 58-212 25-165 (224)
68 KOG4559 Uncharacterized conser 47.0 30 0.00065 30.1 4.0 55 147-201 47-116 (120)
69 KOG4348 Adaptor protein CMS/SE 45.3 13 0.00029 39.0 2.0 36 285-320 263-300 (627)
70 PF06730 FAM92: FAM92 protein; 44.1 2.9E+02 0.0063 26.3 16.5 158 83-256 46-207 (219)
71 cd07686 F-BAR_Fer The F-BAR (F 42.3 3.1E+02 0.0066 26.0 16.8 160 83-256 37-209 (234)
72 cd07643 I-BAR_IMD_MIM Inverse 42.1 3.3E+02 0.0071 26.3 16.7 86 111-201 72-164 (231)
73 PF13587 DJ-1_PfpI_N: N-termin 39.3 3.4 7.5E-05 29.0 -2.3 18 277-294 16-33 (38)
74 PF06075 DUF936: Plant protein 39.0 41 0.0009 35.6 4.4 61 200-261 318-392 (579)
75 PF01025 GrpE: GrpE; InterPro 38.8 73 0.0016 26.9 5.1 62 196-257 16-77 (165)
76 PRK05849 hypothetical protein; 38.8 48 0.001 36.2 5.0 58 82-144 434-501 (783)
77 cd07650 F-BAR_Syp1p_like The F 36.5 3.4E+02 0.0073 24.9 10.2 64 84-149 38-101 (228)
78 KOG2546 Abl interactor ABI-1, 36.2 27 0.00059 36.4 2.5 39 284-322 422-462 (483)
79 KOG3771 Amphiphysin [Intracell 35.8 2.1E+02 0.0045 30.1 8.7 141 59-213 2-179 (460)
80 PF06456 Arfaptin: Arfaptin-li 30.7 4.5E+02 0.0098 24.6 19.5 188 19-228 13-206 (229)
81 PF01957 NfeD: NfeD-like C-ter 30.6 26 0.00056 28.1 1.1 24 291-316 113-136 (144)
82 cd07610 FCH_F-BAR The Extended 29.9 3.4E+02 0.0074 22.9 15.6 64 82-147 31-94 (191)
83 KOG3208 SNARE protein GS28 [In 29.6 1.5E+02 0.0032 28.7 6.0 39 2-46 8-48 (231)
84 PF08826 DMPK_coil: DMPK coile 29.5 95 0.0021 24.1 3.9 48 166-214 7-55 (61)
85 PRK10409 hydrogenase assembly 29.1 31 0.00068 28.5 1.3 11 301-311 41-51 (90)
86 PF11302 DUF3104: Protein of u 28.5 36 0.00077 27.7 1.5 15 300-314 4-18 (75)
87 KOG2996 Rho guanine nucleotide 28.0 50 0.0011 36.2 2.9 36 284-319 804-843 (865)
88 PRK13858 type IV secretion sys 27.2 85 0.0018 28.3 3.8 89 39-135 31-120 (147)
89 PF11697 DUF3293: Protein of u 26.7 26 0.00056 27.2 0.4 18 144-161 52-69 (73)
90 KOG3731 Sulfatases [Carbohydra 26.6 24 0.00052 37.2 0.3 28 278-322 126-153 (541)
91 PF15057 DUF4537: Domain of un 26.4 39 0.00084 28.6 1.5 13 299-311 53-65 (124)
92 PF02211 NHase_beta: Nitrile h 25.6 36 0.00078 31.9 1.3 28 291-318 124-151 (222)
93 COG5346 Predicted membrane pro 25.4 51 0.0011 29.4 2.1 14 229-242 54-67 (136)
94 PF02359 CDC48_N: Cell divisio 25.3 53 0.0011 25.5 1.9 17 299-315 70-86 (87)
95 COG5490 Uncharacterized conser 25.2 2.3E+02 0.0051 26.0 6.2 104 23-146 32-148 (158)
96 COG1948 MUS81 ERCC4-type nucle 24.7 35 0.00075 32.9 1.0 13 301-313 56-68 (254)
97 cd07628 BAR_Atg24p The Bin/Amp 23.5 1.6E+02 0.0034 26.2 4.8 39 107-145 58-96 (185)
98 cd07629 BAR_Atg20p The Bin/Amp 23.0 1.8E+02 0.0039 26.1 5.1 52 91-146 48-99 (187)
99 TIGR00074 hypC_hupF hydrogenas 22.6 46 0.00099 26.6 1.1 9 302-310 36-44 (76)
100 PF04287 DUF446: tRNA pseudour 22.1 75 0.0016 26.7 2.4 28 244-271 1-28 (100)
101 PRK10413 hydrogenase 2 accesso 20.8 53 0.0011 26.6 1.2 10 302-311 43-52 (82)
102 cd07624 BAR_SNX7_30 The Bin/Am 20.7 6.1E+02 0.013 22.6 17.0 130 107-254 67-197 (200)
103 PF02183 HALZ: Homeobox associ 20.6 1.8E+02 0.0039 21.2 3.8 27 155-181 16-42 (45)
104 KOG3565 Cdc42-interacting prot 20.3 29 0.00063 37.1 -0.5 35 286-320 581-616 (640)
No 1
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=100.00 E-value=1.7e-119 Score=805.34 Aligned_cols=208 Identities=54% Similarity=0.844 Sum_probs=205.1
Q ss_pred HHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHH
Q 020634 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 127 (323)
Q Consensus 48 q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre 127 (323)
|+|||||+|||||||||||||||||||||||+||||||+||||||||||+||| +++++||||+++||+||++||||||
T Consensus 1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~--~~~~~LsrAa~~yG~a~~~mEkEre 78 (209)
T cd07607 1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP--SVNTALSRASLHYGSARNQMEKERE 78 (209)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC--CcccHHHHHHHHHhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999 5788999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCC-ChhhhhhhHHHHHHHHHHHHH
Q 020634 128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKAN 206 (323)
Q Consensus 128 ~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~-n~e~~~KLq~AE~Kl~ELks~ 206 (323)
||||+||+||+||||||||||||||||||+|||||||||+|+||+||+|||+|+||++ ||||++||++||+||+|||||
T Consensus 79 ~l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~ 158 (209)
T cd07607 79 NLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSS 158 (209)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 999999999999999999999
Q ss_pred HHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 020634 207 MAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 257 (323)
Q Consensus 207 Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~E 257 (323)
|++|||||||||++||+||||+||||||+||||||+|||||++|||+||+|
T Consensus 159 M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~e 209 (209)
T cd07607 159 MNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHDE 209 (209)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999986
No 2
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.45 E-value=1.5e-11 Score=97.88 Aligned_cols=189 Identities=20% Similarity=0.330 Sum_probs=165.3
Q ss_pred chhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhh
Q 020634 59 GTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVL 138 (323)
Q Consensus 59 aaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ 138 (323)
..+++-+.|++.+..++..+.+.......|++-++++|...+ ..++..|+.+-..||.+...++..+.++..-+...|.
T Consensus 4 ~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~ 82 (194)
T cd07307 4 ELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELP-DLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVI 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777888888888888889999999999999987 3333359999999999999999999999999999999
Q ss_pred hHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHH
Q 020634 139 DPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAAL 218 (323)
Q Consensus 139 ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM 218 (323)
+||+..+. ..+.+.+....+|++.|.+.++--..+.+-+.+.. +..||..++.++++.+.....+..+....|
T Consensus 83 ~pL~~~~~-~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~------~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l 155 (194)
T cd07307 83 EPLKEYLK-KDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK------DSSKLAEAEEELQEAKEKYEELREELIEDL 155 (194)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 45678899999999999999998877766554421 568999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 219 AAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 219 ~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
..+..........-|.+++++...||..+..++++|.
T Consensus 156 ~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~ 192 (194)
T cd07307 156 NKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL 192 (194)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 9999999999999999999999999999999988774
No 3
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.16 E-value=1.6e-08 Score=83.77 Aligned_cols=219 Identities=18% Similarity=0.352 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceechHHHHHHHHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhh------
Q 020634 13 EQVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGT------ 86 (323)
Q Consensus 13 EqVAkQQQAV~Kqf~~~gy~~~d~~v~DE~Elq~hq~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~------ 86 (323)
-.+.+-.|.|.-.+|.+ +...+|+.=-....++..+...+ ++++++ ++.|+....+-..-..
T Consensus 3 K~~~R~~q~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~~~---~~l~~~----~~~~~~~~~~~~~~~~~~~~~~ 70 (229)
T PF03114_consen 3 KKINRAKQRVKQKLGKS-----EKTEIDEEFEELEEKFKQLEESI---KKLQKS----LKKYLDSIKKLSASQKNMKSPF 70 (229)
T ss_dssp HHHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHCHTHHH
T ss_pred hHHHHHHHHHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHhhhhhHHhhhhhHHH
Confidence 44667777888888833 23336774222334444444333 344444 4444444444444444
Q ss_pred -hchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHH
Q 020634 87 -KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQ 165 (323)
Q Consensus 87 -KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQ 165 (323)
+|++.+..||.+.. .+..++.+...||.+...+...+.+++.-+.+.|.+||+..+ ..+.+...+...+++.|.
T Consensus 71 ~~l~~~l~~~~~~~~---~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~--~~~~~i~~~~kkr~~~~l 145 (229)
T PF03114_consen 71 EELADALIELGSEFS---DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL--KEFKEIKKLIKKREKKRL 145 (229)
T ss_dssp HHHHHHHHHHHHCTS---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHH
Confidence 99999999998864 333489999999999999999999999999999999999988 899999999999999999
Q ss_pred HHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHH
Q 020634 166 EAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHL 245 (323)
Q Consensus 166 EaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHq 245 (323)
+.+.....+.+-+.+ ++.++. +.++++.+.....+..+-..-|-.+.+-...+-..-|..+|++...||+
T Consensus 146 dyd~~~~k~~k~~~~--~~~~~~--------~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~ 215 (229)
T PF03114_consen 146 DYDSARSKLEKLRKK--KSKSSK--------EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQ 215 (229)
T ss_dssp HHHHHHHHHHHCHTT--SSBTHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--hccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987777765433 221222 6677777777777777777888888877777777899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020634 246 RIAAILGDVEAEM 258 (323)
Q Consensus 246 rv~~ILd~l~~EM 258 (323)
.+..+|..|..++
T Consensus 216 ~~~~~l~~l~~~l 228 (229)
T PF03114_consen 216 QLYQILEELQPQL 228 (229)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998875
No 4
>smart00721 BAR BAR domain.
Probab=98.67 E-value=2e-05 Score=67.58 Aligned_cols=227 Identities=16% Similarity=0.235 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcceechHHHHHHHHHHHHHhhhhchhhhhHHHhhhhhhee---ecccchhhhhhhchh
Q 020634 14 QVAKQQQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFT---AIGYKHIEAGTKLSE 90 (323)
Q Consensus 14 qVAkQQQAV~Kqf~~~gy~~~d~~v~DE~Elq~hq~LekLY~STRaaKhFQrdIVRgvEGfi---s~gsKq~Ei~~KLae 90 (323)
++.|--|.|.-.+|.+ +-..+||.=. .||+-+..+.. .=..|++.+++|+ .....-..+...+++
T Consensus 5 ~~~R~~q~~~ek~G~~-----e~T~~D~~f~----~le~~~~~~~~---~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~ 72 (239)
T smart00721 5 QFNRAKQKVGEKVGKA-----EKTKLDEDFE----ELERRFDTTEA---EIEKLQKDTKLYLQPNPAVRAKLASQKKLSK 72 (239)
T ss_pred hhHHHHHHHHHHhCCC-----CcCcCCHHHH----HHHHHHHHHHH---HHHHHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 3555566777788833 4444476532 33433333322 2246777778887 555555555566666
Q ss_pred hhhh-hcc--CCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHH
Q 020634 91 DCCR-YGA--ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA 167 (323)
Q Consensus 91 Dc~K-YG~--en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa 167 (323)
.... |+. ..++......+..+-..||.+...+-.-+..+ .-+..-+..|++.-+. .-+.+++....++++.|.+-
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~~~~~~~~kk~~~~~lDy 150 (239)
T smart00721 73 SLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLL-GEFKEIKKARKKLERKLLDY 150 (239)
T ss_pred HHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHH-HHhHHHHHHHHHHHhHHHHH
Confidence 5444 443 22223344457888889999999998888888 6666677777776653 34567888888888888888
Q ss_pred HHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHH
Q 020634 168 ETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRI 247 (323)
Q Consensus 168 E~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv 247 (323)
++.-..+.+=+.+.+ .++ +- ||..||.+|...+.....+.-+...-|..+.+=-.-.-..-|.+.+++..+||..+
T Consensus 151 D~~~~kl~~~~~~~~--~~~-~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~ 226 (239)
T smart00721 151 DSARHKLKKAKKSKE--KKK-DE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRES 226 (239)
T ss_pred HHHHHHHHHHHHhcc--CCh-hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 877666654333311 122 23 99999999999999999999999999999987777777889999999999999999
Q ss_pred HHHHHHHHHHH
Q 020634 248 AAILGDVEAEM 258 (323)
Q Consensus 248 ~~ILd~l~~EM 258 (323)
..+|.+|...|
T Consensus 227 ~~~l~~l~~~l 237 (239)
T smart00721 227 YKLLQQLQQQL 237 (239)
T ss_pred HHHHHHHHHHh
Confidence 99999998766
No 5
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=97.67 E-value=0.0053 Score=56.05 Aligned_cols=181 Identities=17% Similarity=0.247 Sum_probs=129.0
Q ss_pred hhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCC
Q 020634 69 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA 148 (323)
Q Consensus 69 RgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~Ga 148 (323)
|++=+++..|.-.++--..+++.-++.|..-. ..++..++.+-..||.+-..|++.+++|..-+..-|..||-..+.+
T Consensus 23 K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~-~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~- 100 (215)
T cd07604 23 KAVKAIHNSGLAHVENELQFAEALEKLGSKAL-SREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKG- 100 (215)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44445666777777777778888888886532 1122248888999999999999999999999999999999999998
Q ss_pred Cccchh-hHHHHHHHHHHHHHHhHHHHHHHHhh-hccCC-------ChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 020634 149 PLEDAR-HLAQRYSRMRQEAETQAVEVSKRQQR-VREAP-------NPENVAKLHAAEARMQELKANMAILGKEAAAALA 219 (323)
Q Consensus 149 PLEDAR-hLaqRYdRmRQEaE~qa~eV~rRq~k-~res~-------n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~ 219 (323)
.|.+++ -+..+||+-+.+-|.-..-+.|.+.+ +++.. .+|...=|+.+....++.. -+=...+.
T Consensus 101 dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~-------~~yv~~l~ 173 (215)
T cd07604 101 DLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQM-------CEYLIKVN 173 (215)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 778887 99999999999888765555544332 11110 0122222333332222211 12255777
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 020634 220 AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (323)
Q Consensus 220 aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~EM 258 (323)
.|++-+-.==|+.|++.+.|--+|++.-.++|++++-=|
T Consensus 174 ~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 174 EIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 788877777889999999999999999999999987543
No 6
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=97.55 E-value=7.2e-05 Score=53.13 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=28.5
Q ss_pred eccCCCcCCccceeeecCCEEEEEEecCcchhh
Q 020634 288 AIHPFTAASEKELSLGVGDYVVVRKVCYISFLR 320 (323)
Q Consensus 288 v~hpf~aese~ELsLsvGDyVVVRqVs~~GWse 320 (323)
|+|+|.++.+.||||..||.|.|-.-.++||..
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~ 33 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWY 33 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEE
Confidence 689999999999999999999998889999963
No 7
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=97.54 E-value=7.1e-05 Score=51.95 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=30.3
Q ss_pred eeccCCCcCCccceeeecCCEEEEEEecCcchh
Q 020634 287 EAIHPFTAASEKELSLGVGDYVVVRKVCYISFL 319 (323)
Q Consensus 287 ev~hpf~aese~ELsLsvGDyVVVRqVs~~GWs 319 (323)
.|+++|+++.++|||+..||.|.|-+...+||.
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww 33 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWW 33 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEE
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEE
Confidence 379999999999999999999999999999995
No 8
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=97.53 E-value=7.7e-05 Score=49.83 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.9
Q ss_pred eeeeeccCCCcCCccceeeecCCEEEEEEecCcchhh
Q 020634 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLR 320 (323)
Q Consensus 284 Flaev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse 320 (323)
+.+.|+++|++..++||+|.+||.|.|-.-.++||..
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~ 39 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWK 39 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEE
Confidence 5678999999999999999999999999998999963
No 9
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=97.47 E-value=0.011 Score=58.41 Aligned_cols=281 Identities=17% Similarity=0.259 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcceechH--HHH-----HHHHHHHHHhhhhc---------hhhhhHHHhhhhhhee
Q 020634 12 KEQVAKQQQAVIKQFSASGYERSDVMVIDEV--EMQ-----RHQQLEKLYRSTRG---------TKDFQRDLVKVAEVFT 75 (323)
Q Consensus 12 rEqVAkQQQAV~Kqf~~~gy~~~d~~v~DE~--Elq-----~hq~LekLY~STRa---------aKhFQrdIVRgvEGfi 75 (323)
+.|..|-+|-+=..|||. ...=+|.. ||. +.--+-+|+.+|-- ||----+++.-|-|-+
T Consensus 2 ~kqF~ka~Q~~sEK~gga-----e~TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~ 76 (366)
T KOG1118|consen 2 KKQFNKASQWTSEKVGGA-----EGTKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQV 76 (366)
T ss_pred chHHHHHHHHhccccccc-----cCCcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccc
Confidence 456667777888888732 22223332 222 23345566666532 2222236777777777
Q ss_pred ecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhh
Q 020634 76 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARH 155 (323)
Q Consensus 76 s~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARh 155 (323)
-+--++.+.| -|++---|||-|=+ .++.+..+-..||.+...|-.=.+.|---+---..+||.-. -|-|++.
T Consensus 77 k~~~ypq~e~-~Lg~~mik~gkeLg---~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l----~~~elK~ 148 (366)
T KOG1118|consen 77 KEKGYPQTEG-LLGDVMIKHGKELG---DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNL----QLKELKD 148 (366)
T ss_pred cCCCCccchh-HHHHHHHHHHHhcC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh----hHHHHHH
Confidence 6655554432 46677789998865 22346778888999999988888888777777778888643 1334444
Q ss_pred HHHHHHHHHHHHHHhHHHHHH-HHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHH
Q 020634 156 LAQRYSRMRQEAETQAVEVSK-RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLV 234 (323)
Q Consensus 156 LaqRYdRmRQEaE~qa~eV~r-Rq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLi 234 (323)
+-+.-.+| |-..+.-|-.+ |+-| .+| --|..|..|..|-|.- -+.---++..++.-| .+-|.
T Consensus 149 i~hh~KKL--EgRRldyD~kkkk~~K-----~~d--EelrqA~eKfEESkE~----aE~sM~nlle~d~eq----vsqL~ 211 (366)
T KOG1118|consen 149 IQHHRKKL--EGRRLDYDYKKKKQGK-----IKD--EELRQALEKFEESKEL----AEDSMFNLLENDVEQ----VSQLS 211 (366)
T ss_pred HHHHHHHh--hhhhhHHHHHHHHhcc-----CCh--HHHHHHHHHHHHHHHH----HHHHHHHHHhcCHHH----HHHHH
Confidence 43333222 11122222222 2222 222 2367788888775531 011112233334333 34578
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhh------h----------cCCC--CCCCCC---------------------
Q 020634 235 AMVEGEKNYHLRIAAILGDVEAEMVSEKQR------K----------ESAP--PVIPSE--------------------- 275 (323)
Q Consensus 235 aMVeaEr~YHqrv~~ILd~l~~EMvsE~q~------~----------Es~~--~~~~~~--------------------- 275 (323)
++|+++-.||+..+.||+.|.--.-+-... . +.+| ||+..+
T Consensus 212 ~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~~prrey~p~~~~an~f~p~~~p~~~~g~~s~T~~t~~~ass~~~is~ 291 (366)
T KOG1118|consen 212 ALIQAQLDFHRQSTQILQELQMKLFSRIRDASSQPRREYVPRSVLANEFAPSGPPIQLNGKLSKTTSTPQSASSPSNISP 291 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCchhhcCCcccccccCCCCCCccccCCCCCcCccCccccCCcccCCC
Confidence 999999999999999999998765432211 0 1110 110000
Q ss_pred ------CCc-cchhheeeeeccCCCcCCccceeeecCCEEEEEEecCcchhhhc
Q 020634 276 ------NSS-QKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLRQM 322 (323)
Q Consensus 276 ------~~~-~~~~yFlaev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse~~ 322 (323)
+++ ..+.-=.-.++..|+++.||||-|..||.+.|-.--.-+|-|-|
T Consensus 292 ~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~ 345 (366)
T KOG1118|consen 292 KPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGE 345 (366)
T ss_pred CCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhe
Confidence 000 22233345789999999999999999999977554455676644
No 10
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=97.45 E-value=0.0001 Score=48.87 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=32.2
Q ss_pred eeeccCCCcCCccceeeecCCEEEEEEecCcchhh
Q 020634 286 AEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLR 320 (323)
Q Consensus 286 aev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse 320 (323)
+.++++|.+..++||+|.+||.|.|-+...+||..
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~ 36 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWE 36 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEE
Confidence 47899999999999999999999999998899963
No 11
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=97.44 E-value=0.025 Score=52.48 Aligned_cols=161 Identities=16% Similarity=0.264 Sum_probs=109.6
Q ss_pred hchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHH
Q 020634 87 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 166 (323)
Q Consensus 87 KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 166 (323)
-|+..--+||.+=+ .+..|.+|-..||.+-+.+=.+|.++-..+-+.|.+||+....+ --.-+.+-|.-
T Consensus 61 ~Lg~~M~~~g~~l~---~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~--------dik~i~k~RKk 129 (244)
T cd07595 61 GLAQSMLESSKELP---DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEV--------EIPNIQKQKKR 129 (244)
T ss_pred HHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 45665667777753 45579999999999999999999999999999999999987652 12345555665
Q ss_pred HHHhH--HHHHHHHhh-h-ccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 020634 167 AETQA--VEVSKRQQR-V-REAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKN 242 (323)
Q Consensus 167 aE~qa--~eV~rRq~k-~-res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~ 242 (323)
++.-. -|.+|++.+ . |+++...+..|....+..|.+...-+..---.|++.|-.|=+=-- =-+.-|..+|+|...
T Consensus 130 Le~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~-e~~~~l~~lv~aQl~ 208 (244)
T cd07595 130 LSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEA-EIASYLIDLIEAQRE 208 (244)
T ss_pred HhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHH
Confidence 55443 345555553 1 222223344555544555555555454444556666655433200 014568999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020634 243 YHLRIAAILGDVEAEMV 259 (323)
Q Consensus 243 YHqrv~~ILd~l~~EMv 259 (323)
||.+.++||+.+-.+|-
T Consensus 209 YH~~a~e~L~~l~~~l~ 225 (244)
T cd07595 209 YHRTALSVLEAVLPELQ 225 (244)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999987
No 12
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.42 E-value=0.012 Score=53.59 Aligned_cols=179 Identities=12% Similarity=0.191 Sum_probs=136.1
Q ss_pred HHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHh
Q 020634 65 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM 144 (323)
Q Consensus 65 rdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaM 144 (323)
..|++.+=++|..|....--..+++..-+.+|.+.+ .+..++.+-..|+.+-..|++.|..|+.-...-+..||-..
T Consensus 19 ~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~---~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F 95 (200)
T cd07639 19 EKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP---KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLL 95 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777788888888887643 33347788888999999999999999999999999999998
Q ss_pred hcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 020634 145 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ 224 (323)
Q Consensus 145 v~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQ 224 (323)
+.+ +|-+++-...+||+..+.-++-..--.+ ++ -+ -..-++.|+.-|.--++.-.-.-=+=+..+..|++-
T Consensus 96 ~k~-dl~~vKe~kK~FdK~s~~~d~al~K~~~----~~--k~--k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~k 166 (200)
T cd07639 96 VKE-DLRGFRDARKEFERGAESLEAALQHNAE----TP--RR--KAQEVEEAAAALLGARATFRDRALDYALQINVIEDK 166 (200)
T ss_pred HHh-hhHHHHHHhhhHhhcchhHHHHHHHHhh----cc--cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 6788999999999999988875322221 11 01 011346666677766776666666667777777777
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 225 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 225 QQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
.-=-=|+.|++.+.|=.+|.+.--++|++|+
T Consensus 167 Kkfefle~ll~~m~a~~tfF~qG~ell~~l~ 197 (200)
T cd07639 167 KKFDILEFMLQLMEAQASFFQQGHEALSALH 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777789999999999999999999999886
No 13
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=97.25 E-value=0.078 Score=49.20 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=125.7
Q ss_pred HHHHHHHHhhhhchhhhhHHHhhhhhheee--------------------cccchhhhhhhchhhhhhhccCCCCCCccc
Q 020634 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTA--------------------IGYKHIEAGTKLSEDCCRYGAENNQNINEN 106 (323)
Q Consensus 47 hq~LekLY~STRaaKhFQrdIVRgvEGfis--------------------~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~ 106 (323)
..+||+-.-+|+.+= -+|.+..+.|+- .++-+.| -|++-.-+||.+=. .++
T Consensus 19 f~~le~~~d~~~~~~---e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e---~Lg~~M~~~g~~lg---~~S 89 (229)
T cd07594 19 FENLLQRADKTKVWT---EKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLE---QLGQAMIEAGNDFG---PGT 89 (229)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHH---HHHHHHHHHHhhCC---CCC
Confidence 456777777776543 366666666662 1233333 68888999999854 456
Q ss_pred hhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCC
Q 020634 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPN 186 (323)
Q Consensus 107 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n 186 (323)
.++.|-..||.|...|=.-|..+.-.+.+-+.+||+....+- -.-|..-|.-+|.--.+.--.++|.+-+.+
T Consensus 90 ~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~d--------ik~i~k~RKkLe~rRLd~D~~k~r~~kAk~ 161 (229)
T cd07594 90 AYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGD--------MKTISKERKLLENKRLDLDACKTRVKKAKS 161 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 799999999999999999999999999999999999876531 123455566666555444333334432222
Q ss_pred ----hhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 020634 187 ----PENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 257 (323)
Q Consensus 187 ----~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~E 257 (323)
+..-..|+.|+.|..+-+. .|...|-.|-. .-- -+.-|-+.|+|+-+||....+||..|..+
T Consensus 162 ~~~~~~~e~elr~Ae~kF~~~~E-------~a~~~M~~i~~~~~~--~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 228 (229)
T cd07594 162 AEAIEQAEQDLRVAQSEFDRQAE-------ITKLLLEGISSTHAN--HLRCLRDFVEAQMTYYAQCYQYMDDLQRQ 228 (229)
T ss_pred ccchhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345667778888776543 33344443322 111 24568899999999999999999999764
No 14
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=97.17 E-value=0.029 Score=52.28 Aligned_cols=184 Identities=16% Similarity=0.206 Sum_probs=124.5
Q ss_pred HHHHHHHHhhhhchhhhhHHHhhhhhheee-------------------cccchhhhhhhchhhhhhhccCCCCCCccch
Q 020634 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTA-------------------IGYKHIEAGTKLSEDCCRYGAENNQNINENI 107 (323)
Q Consensus 47 hq~LekLY~STRaaKhFQrdIVRgvEGfis-------------------~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~ 107 (323)
.++|+|---+|+.+ =.+|++.+|-++- .++++- ..-|++..-+||.+=. .++.
T Consensus 19 f~~l~~~~d~t~~~---~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~--~~~Lg~~M~~~g~~~g---~~S~ 90 (229)
T cd07616 19 LENLLSKAECTKHW---TEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNN--PELLGQYMIDAGNEFG---PGTA 90 (229)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCCh--HHHHHHHHHHHHHhcC---CCCc
Confidence 45677776666543 3456655554442 234433 3568888999999954 4567
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCC--
Q 020634 108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-- 185 (323)
Q Consensus 108 LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~-- 185 (323)
|..|-..||.|.+.|=.-|..|.....+-+.+|||.-..+ --..|..-|.-+|.--.+.--.++|.+-+.
T Consensus 91 ~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~--------dik~i~k~RKkLe~rRLdyD~~K~r~~kAk~~ 162 (229)
T cd07616 91 YGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG--------DYKTITKERKLLQNKRLDLDAAKTRLKKAKVA 162 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999998888999999998876 223456667777766554433333333221
Q ss_pred --ChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHH---HHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 020634 186 --NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIE---AQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 257 (323)
Q Consensus 186 --n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVE---aQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~E 257 (323)
.+..-.+|..||.|+.+-+.-+ ...|--|- +- -+.=|.+.|+|.-.||....+||..|..+
T Consensus 163 ~~~~~~e~elr~ae~efees~E~a-------~~~m~~i~~~~~e----~~~~L~~lv~AQl~Yh~~~~e~L~~L~~~ 228 (229)
T cd07616 163 EARAAAEQELRITQSEFDRQAEIT-------RLLLEGISSTHAH----HLRCLNDFVEAQMTYYAQCYQYMLDLQKQ 228 (229)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHH-------HHHHHhhhhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334556777888887654322 22222221 11 24568899999999999999999999865
No 15
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.13 E-value=0.082 Score=47.73 Aligned_cols=182 Identities=9% Similarity=0.168 Sum_probs=133.0
Q ss_pred hhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHH
Q 020634 62 DFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPL 141 (323)
Q Consensus 62 hFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePL 141 (323)
++=..|++++=++|..|.....-...++..-..+|.+ |..+..++-+-..||.+-..|+..|..|+.-...-|.+||
T Consensus 16 ~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~---~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL 92 (200)
T cd07603 16 TRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDY---FRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQL 92 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777788877788876 3345568888889999999999999999999999999999
Q ss_pred HHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 020634 142 RAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI 221 (323)
Q Consensus 142 RaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV 221 (323)
+..+.+ .|-+.+-+..+||+....-++-..--+. ..|.| | .-++.|+.-|..-++.---.-=+=..++..|
T Consensus 93 ~~F~k~-dL~~vKE~kk~Fdk~s~~yd~al~k~~~-~~K~K----~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~i 163 (200)
T cd07603 93 QNFVKE-DIKKVKESKKHFEKISDDLDNALVKNAQ-APRSK----P---QEAEEATNILTATRSCFRHTALDYVLQINVL 163 (200)
T ss_pred HHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 5678899999999999988875442111 22222 1 1234444555555555444444556677777
Q ss_pred HHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 222 EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 222 EaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
.+-.-=-=|+.|++.+.|=-+|.+.-.+++++|+
T Consensus 164 q~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~ 197 (200)
T cd07603 164 QAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLE 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 7766666788888888898888888888887764
No 16
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.11 E-value=0.053 Score=51.18 Aligned_cols=198 Identities=15% Similarity=0.190 Sum_probs=123.0
Q ss_pred HHHHHHHHhhhhchhhhhHHHhhhhhheeec--ccchhhhhh-----hchhhhhhhccCCCCCCccchhhHHHHHhhHhh
Q 020634 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAI--GYKHIEAGT-----KLSEDCCRYGAENNQNINENILPKAAAIYGDAR 119 (323)
Q Consensus 47 hq~LekLY~STRaaKhFQrdIVRgvEGfis~--gsKq~Ei~~-----KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~ 119 (323)
.++|||---+|+.+ =-+|++-.+.++-- |+.-=-..+ -|++.+-+||.+=+ .++.|.+|-..||.+-
T Consensus 17 ~~~le~r~D~~k~~---~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg---~~s~lg~aL~~~gea~ 90 (248)
T cd07619 17 LLQVEKRLELVKQV---SHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLG---DDSLLGKMLKLCGETE 90 (248)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 46777776666544 44777777776532 111111122 48999999999964 4567999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhh--ccCC---Chh-hhhhh
Q 020634 120 KHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRV--REAP---NPE-NVAKL 193 (323)
Q Consensus 120 ~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~--res~---n~e-~~~KL 193 (323)
+.|=.+|-++--.+-..|.+||+....+- |-.+-|-...-...|-+. |..|+|.+. +.++ |.+ +..|.
T Consensus 91 ~kla~a~~~~d~~i~~~fl~PL~~~le~d-lk~I~k~RK~Le~~RLD~-----D~~K~r~~~a~~~~~~~~~~~~~~~k~ 164 (248)
T cd07619 91 DKLAQELILFELQIERDVVEPLYVLAEVE-IPNIQKQRKHLAKLVLDM-----DSSRTRWQQSSKSSGLSSNLQPTGAKA 164 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhHhhH-----HHHHHHHHhccccccccccccCCCCcc
Confidence 99999999999999999999999887743 222222222333333332 234444331 1111 111 13344
Q ss_pred HHHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 020634 194 HAAEARMQELKANMA----ILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE 261 (323)
Q Consensus 194 q~AE~Kl~ELks~Ma----~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~EMvsE 261 (323)
+.+...+.+....+. .+=-++..-|.-+..|=.. |+..|+|=-.||.+.++||+.+..+|-.=
T Consensus 165 e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~-----l~~Lv~AQleYHr~A~eiLe~l~~~i~~~ 231 (248)
T cd07619 165 DALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANY-----FQTLIEVQAEYHRKSLELLQSVLPQIKAH 231 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 2223333334444443322 99999999999999999999999988543
No 17
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.09 E-value=0.044 Score=49.83 Aligned_cols=183 Identities=15% Similarity=0.232 Sum_probs=136.5
Q ss_pred HHHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhh----HHHHHhhHhhHHH
Q 020634 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILP----KAAAIYGDARKHV 122 (323)
Q Consensus 47 hq~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~La----rAa~~yg~a~~~m 122 (323)
...|+|||.+-+.--+=+++... -...+|..-..||.. + .+.++. .+-..|+.+-..|
T Consensus 14 ~~~~~Kl~K~~~~~~~a~~~~~~--------------a~~~Fa~~L~~f~~~-~---dD~~~~a~gg~~l~kF~~~l~ei 75 (202)
T cd07606 14 RDRSLKLYKGCRKYRDALGEAYD--------------GDSAFAESLEEFGGG-H---DDPISVAVGGPVMTKFTSALREI 75 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCC-C---CChHHHhccchHHHHHHHHHHHH
Confidence 35677887776653332232222 223344444555532 2 232332 4567799999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHH
Q 020634 123 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE 202 (323)
Q Consensus 123 EkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~E 202 (323)
+..|+.|+.-...-+..||...+. --|-+++-+..+||+-..+-++-..-.+.-..+.| | .+++.|+..|.-
T Consensus 76 ~~~~~~L~~q~~~~l~~pL~~F~k-~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k----~---~~~~ea~~~l~~ 147 (202)
T cd07606 76 GSYKEVLRSQVEHMLNDRLAQFAD-TDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAK----P---EILAAAEEDLGT 147 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc----h---HHHHHHHHHHHH
Confidence 999999999999999999999998 46778999999999999999986665554333222 1 246788888888
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 203 LKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 203 Lks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
.+++.--..-+=..++..|++-.-==.|+.|++.+.|=-+|++.-.++|.+|+
T Consensus 148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~ 200 (202)
T cd07606 148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888889999999988888899999999999999999999988764
No 18
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=97.06 E-value=0.056 Score=49.83 Aligned_cols=150 Identities=21% Similarity=0.367 Sum_probs=103.9
Q ss_pred hhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHH
Q 020634 86 TKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQ 165 (323)
Q Consensus 86 ~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQ 165 (323)
.-|++.+-+||.+=. .++.++.|-..||.|..++=..|..+--.+.+-+.+||+.-..+- -..|...|.
T Consensus 67 ~~Lg~~M~~~g~elg---~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~d--------ik~i~k~RK 135 (223)
T cd07592 67 GLLGEVMLKYGRELG---EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKD--------LKEINHHRK 135 (223)
T ss_pred cHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 568999999999964 445799999999999999999999999999999999999654321 124555666
Q ss_pred HHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhHH
Q 020634 166 EAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYH 244 (323)
Q Consensus 166 EaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeaEr~YH 244 (323)
-+|.--.+.--.++|... .++ .-|..||.|+.+-+.- |...|-.+=. .-- -+.=|..+|+|...||
T Consensus 136 kLe~rRLdyD~~k~k~~k--~~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e--~~~~L~~lveAQl~Yh 202 (223)
T cd07592 136 KLEGRRLDYDYKKRKQGK--GPD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE--QVSQLSALVEAQLDYH 202 (223)
T ss_pred HHHHHHHHHHHHHHhccc--Cch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH--HHHHHHHHHHHHHHHH
Confidence 666554443322223221 222 3366788887765432 2223322211 001 1345889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020634 245 LRIAAILGDVEAEMV 259 (323)
Q Consensus 245 qrv~~ILd~l~~EMv 259 (323)
...++||..|..+|-
T Consensus 203 ~~~~e~L~~l~~~L~ 217 (223)
T cd07592 203 RQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
No 19
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=97.01 E-value=0.058 Score=49.75 Aligned_cols=185 Identities=11% Similarity=0.138 Sum_probs=127.1
Q ss_pred hhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCC--CCccc-hhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhh
Q 020634 63 FQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLD 139 (323)
Q Consensus 63 FQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~--~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~e 139 (323)
|=++||+..=++|..|..=.---.+++.--+.+|-+-.. .+.+. .++-+-..|+.--+.|+.+|+.|+.-...-|..
T Consensus 17 ~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~ 96 (207)
T cd07634 17 FIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIA 96 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555443333334444444444433110 11222 588899999999999999999999999999999
Q ss_pred HHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 020634 140 PLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALA 219 (323)
Q Consensus 140 PLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~ 219 (323)
||-..+.+ +|-+++-...+||+-...-++-..--..-..+.+ -.-++.|+.-|.--++.---.-=+=+-.+.
T Consensus 97 pL~~f~k~-dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk-------~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~ 168 (207)
T cd07634 97 PLEKFRKE-QIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKK-------ESHLQRADTQIDREHQNFYEASLEYVFKIQ 168 (207)
T ss_pred HHHHHHHH-HHHHHHHHccchhHHHhHHHHHHHHHHhccccCC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 5788999999999999998763322111111111 124567777777777665555556666777
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 220 AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 220 aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
.|++-.-===|+.|++.+.|=.+|.+.-.+++++++
T Consensus 169 ~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~ 204 (207)
T cd07634 169 EVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 777766666788999999999999999999888875
No 20
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.97 E-value=0.088 Score=47.76 Aligned_cols=143 Identities=9% Similarity=0.231 Sum_probs=112.2
Q ss_pred ccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 020634 104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVRE 183 (323)
Q Consensus 104 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~re 183 (323)
.+..++.+-..||.+-..|+..|..|+.-...-+.+||+.-+.+ .|-..+-+..+||+....-++-..-.+ ++|.+
T Consensus 55 gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se~yd~al~k~~--~~k~k- 130 (200)
T cd07637 55 KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVREDLEIALVKNA--QAPRH- 130 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCC-
Confidence 44467788888999999999999999999999999999999886 567788999999999988876655432 23322
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 184 APNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 184 s~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
.| .-|+.|+.-|.+-+++---.-=+=..++..|++-.-=-=|+.|++.+.|=-+|+..--++|++|+
T Consensus 131 --k~---~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~ 197 (200)
T cd07637 131 --KP---HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELD 197 (200)
T ss_pred --Ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 12 23466666666666666555556677888888877777789999999999999999999999886
No 21
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=96.94 E-value=0.076 Score=48.86 Aligned_cols=184 Identities=12% Similarity=0.178 Sum_probs=127.7
Q ss_pred hHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCC--CCcc-chhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhH
Q 020634 64 QRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINE-NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDP 140 (323)
Q Consensus 64 QrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~--~~~~-~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~eP 140 (323)
=+.||++.=++|..|..-.-.-..++..-+-|+-+-.. .+.+ ..++.+-..||..-..||.+|+.|+.-....+..|
T Consensus 18 ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~p 97 (207)
T cd07602 18 IKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556655555444555566666666644110 0122 13677888999999999999999999999999999
Q ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 020634 141 LRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA 220 (323)
Q Consensus 141 LRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~a 220 (323)
|..-+. -.|-+++-...+||+-..+-+.-..--+.=..|.|+ .-++.|+.-|.--+++---.-=+=+.++..
T Consensus 98 L~~F~k-~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~-------~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~ 169 (207)
T cd07602 98 LEKFRK-EQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKE-------NQLQEADAQLDMERRNFHQASLEYVFKLQE 169 (207)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 788999999999999999888765433221111111 135556666665555555555556677777
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 221 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 221 VEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
|++-..===|+.|++.+.|=-+|...--+++.+++
T Consensus 170 vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~ 204 (207)
T cd07602 170 VQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 77776666678888889999888888888877765
No 22
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.91 E-value=0.069 Score=49.85 Aligned_cols=222 Identities=18% Similarity=0.250 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcc--eechHHHHHHHHHHHHHhhhhchhhhhHHHhhhhhheeecccchh-hhhhhch
Q 020634 13 EQVAKQQQAVIKQFSASGYERSDVM--VIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHI-EAGTKLS 89 (323)
Q Consensus 13 EqVAkQQQAV~Kqf~~~gy~~~d~~--v~DE~Elq~hq~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~-Ei~~KLa 89 (323)
+.|=+-=+.|-++|..-||--.-++ .+.+---.-+.+...|=..| ...+.|.-++- -.++.|+- -...-|+
T Consensus 11 k~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~-----~~~~~~~pkTl~~aLs 84 (242)
T cd07600 11 KLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG-----TPAPAKLPKTLNHALS 84 (242)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC-----CCCCCCCCCcHHHHHH
Confidence 4555556788899998888322111 12222222344554444444 34455555431 11112111 1234567
Q ss_pred hhhhhhccCCCCC--CccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHH
Q 020634 90 EDCCRYGAENNQN--INENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA 167 (323)
Q Consensus 90 eDc~KYG~en~~~--~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa 167 (323)
..+-++|.+-..+ .+++.|++|-..||.+...|=.-|..+-..+.+-+.+||+.-+.+- -..+.+.|.-+
T Consensus 85 ~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d--------~k~i~k~RKkl 156 (242)
T cd07600 85 RAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTS--------FQKAHKARKKV 156 (242)
T ss_pred HHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 7776777664310 2367899999999999999999999999999999999999876532 23566777777
Q ss_pred HHhHHHHHHHHhhhccCC----ChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH
Q 020634 168 ETQAVEVSKRQQRVREAP----NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNY 243 (323)
Q Consensus 168 E~qa~eV~rRq~k~res~----n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~Y 243 (323)
|.--.+.--.+.|.+... ..+--..++.||.++.+-+ -.|.-.|..|-.-= =-++=|..+|+|.-.|
T Consensus 157 e~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~-------E~a~~~M~~il~~~--e~i~~L~~fv~AQl~Y 227 (242)
T cd07600 157 EDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSAT-------EEAVELMKEVLDNP--EPLQLLKELVKAQLAY 227 (242)
T ss_pred HHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhH-------HHHHHHHHHHHhhh--HHHHHHHHHHHHHHHH
Confidence 766554433333333221 2233445667777776655 24444555443321 1367788999999999
Q ss_pred HHHHHHHHHHHHHH
Q 020634 244 HLRIAAILGDVEAE 257 (323)
Q Consensus 244 Hqrv~~ILd~l~~E 257 (323)
|....+||..|..+
T Consensus 228 h~~~~e~L~~l~~~ 241 (242)
T cd07600 228 HKTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998764
No 23
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=96.88 E-value=0.15 Score=46.91 Aligned_cols=152 Identities=18% Similarity=0.297 Sum_probs=106.0
Q ss_pred hhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHH
Q 020634 85 GTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMR 164 (323)
Q Consensus 85 ~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmR 164 (323)
..-|++.--.||.+=+ .++.+..|-..||.|.++|-..++.|..-+.+-+.+||+-.+. |-+ -|..-|
T Consensus 53 ~~~Lg~~M~~~g~~lg---~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-----~~k----~i~k~R 120 (215)
T cd07593 53 VEALGLVMINHGEEFP---QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-----EMK----EYHSAR 120 (215)
T ss_pred HHHHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HHHHHH
Confidence 4457777778888854 4567999999999999999999999999999999999986652 222 466777
Q ss_pred HHHHHhHHHHHHHHhhhccCC--ChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhh
Q 020634 165 QEAETQAVEVSKRQQRVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEK 241 (323)
Q Consensus 165 QEaE~qa~eV~rRq~k~res~--n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEa-QQQrlTlQRLiaMVeaEr 241 (323)
.-+|.--.+.--.++|.+.+. .+.--.-|+.|+.|..+-+.- |...|-.|-. .-- -+.=|...|+|.-
T Consensus 121 KkLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e--~~~~L~~lv~AQl 191 (215)
T cd07593 121 KKLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSED-------VEARMVAIKESEAD--QYRDLTDLLDAEL 191 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChH--HHHHHHHHHHHHH
Confidence 777776666655555554332 222234456677777665443 3333333321 111 1345788999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 020634 242 NYHLRIAAILGDVEAE 257 (323)
Q Consensus 242 ~YHqrv~~ILd~l~~E 257 (323)
.||...++||..|..+
T Consensus 192 ~Yh~q~~e~L~~l~~~ 207 (215)
T cd07593 192 DYHQQSLDVLREVRQS 207 (215)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 24
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=96.84 E-value=0.085 Score=49.09 Aligned_cols=146 Identities=19% Similarity=0.319 Sum_probs=102.0
Q ss_pred hhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHH
Q 020634 86 TKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQ 165 (323)
Q Consensus 86 ~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQ 165 (323)
.-|++.--+||.+=. .++.+..|-..||.|.++|=..+..+--...+-+.+||+....+- -.-|..-|.
T Consensus 67 ~~Lg~~M~~~G~elg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~d--------ik~i~k~RK 135 (223)
T cd07613 67 ALLAEAMLKFGRELG---DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKD--------LREIQHHLK 135 (223)
T ss_pred hHHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 446777778898864 456799999999999999999999999999999999999864331 113444555
Q ss_pred HHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 020634 166 EAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMA-----ILGKEAAAALAAIEAQQHRLTFQRLVAMVEGE 240 (323)
Q Consensus 166 EaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma-----~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaE 240 (323)
-.|..-.+.--.+.|. ...+ -.-|+.|+.|..+-+.-.. +|..|+ -| +.=|.+.|||+
T Consensus 136 kLe~rRLd~D~~K~r~--~k~~--eeElr~A~~kFees~E~a~~~M~n~l~~e~---------e~----~~~L~~fveAQ 198 (223)
T cd07613 136 KLEGRRLDFDYKKKRQ--GKIP--DEELRQALEKFDESKEIAESSMFNLLEMDI---------EQ----VSQLSALVQAQ 198 (223)
T ss_pred HHHHHHHhHHHHHHhC--CCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc---------hH----HHHHHHHHHHH
Confidence 5554443333222222 2212 2347788888887665332 333322 12 23688999999
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 020634 241 KNYHLRIAAILGDVEAEMV 259 (323)
Q Consensus 241 r~YHqrv~~ILd~l~~EMv 259 (323)
-.||...++||..|..++.
T Consensus 199 l~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07613 199 LEYHKQATQILQQVTVKLE 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886
No 25
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=96.52 E-value=0.19 Score=46.89 Aligned_cols=183 Identities=16% Similarity=0.229 Sum_probs=126.6
Q ss_pred HHHHHHHHhhhhchhhhhHHHhhhhhheeecc--cch---------------hhhhhhchhhhhhhccCCCCCCccchhh
Q 020634 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIG--YKH---------------IEAGTKLSEDCCRYGAENNQNINENILP 109 (323)
Q Consensus 47 hq~LekLY~STRaaKhFQrdIVRgvEGfis~g--sKq---------------~Ei~~KLaeDc~KYG~en~~~~~~~~La 109 (323)
.++|++.--+|+.+ =.+|++.+|-|+--- ++- .--..-|++..-+||.+=. .++.+.
T Consensus 19 f~~l~~~~D~tk~~---~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g---~~s~~G 92 (220)
T cd07617 19 FENLLARADSTKNW---TEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFG---PGTPYG 92 (220)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcC---CCCchH
Confidence 56777777777654 457777777765322 111 1113347888889999854 455799
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhh
Q 020634 110 KAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPEN 189 (323)
Q Consensus 110 rAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~ 189 (323)
.|-..||.|...|=.-+..+.-...+-+.+||+....+- -.-|..-|.-+|..-.+.-..++|.+ ++|
T Consensus 93 ~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~d--------lk~i~k~RKkLe~rRLd~D~~K~r~~---kae- 160 (220)
T cd07617 93 KTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGD--------WKTISKERRLLQNRRLDLDACKARLK---KAE- 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-
Confidence 999999999999999999999999999999999776542 12455667777766666555555554 234
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 020634 190 VAKLHAAEARMQELKANMAILGKEAAAALAAIE-AQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 257 (323)
Q Consensus 190 ~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVE-aQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~E 257 (323)
..|+.|+.|..+-+. .+. ..|--|- .-- =.+.=|-+.|+|...||....+||..|..+
T Consensus 161 -~elr~A~~kf~~~~E-~a~------~~M~~il~~~~--e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 161 -HELRVAQTEFDRQAE-VTR------LLLEGISSTHV--NHLRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred -HHHHHHHHHHHHHHH-HHH------HHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378889999887544 322 2232221 100 124568899999999999999999999765
No 26
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.46 E-value=0.47 Score=43.42 Aligned_cols=182 Identities=10% Similarity=0.237 Sum_probs=133.8
Q ss_pred HHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHH
Q 020634 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 127 (323)
Q Consensus 48 q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre 127 (323)
..|+||+..-+.--+.+++-+.+...|+. |-+ |-.+||++.. ..+-+-..|+.+-..|+..|+
T Consensus 16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-~l~----------d~~~~~~~De------~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-GIR----------DLAQYSSKDA------VIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHH----------HHHHhCCcch------hhHHHHHHHHHHHHHHHHHHH
Confidence 57888888888777777777776666642 222 3355776665 233444559999999999999
Q ss_pred HHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHH
Q 020634 128 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 207 (323)
Q Consensus 128 ~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~M 207 (323)
.|+.-...-+..||..-+.. .|-+++-...+||+..++-++-..--++=- |.| ..-++.|+.-|.--+++-
T Consensus 79 ~L~~q~~~~l~~~L~~F~k~-dl~~vke~kk~FdK~s~~~~~aL~K~~~~~-k~k-------~~e~eEa~~~l~~~r~~F 149 (200)
T cd07638 79 ILFDQAQRSIKAQLQTFVKE-DLRKFKDAKKQFDKVSEEKENALVKNAQVQ-RNK-------QHEVEEATNILTATRKCF 149 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHhccCC-cCc-------hHHHHHHHHHHHHHHHHH
Confidence 99999999999999887764 567899999999999976665432211110 111 123466666777777776
Q ss_pred HHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 208 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 208 a~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
--..=+=..++..|++-.-=-=|+.|++.+.|=-+|...--++|++++
T Consensus 150 ~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~ 197 (200)
T cd07638 150 RHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELG 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 666667778888888888777889999999999999999999998875
No 27
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=96.37 E-value=0.37 Score=45.42 Aligned_cols=194 Identities=18% Similarity=0.248 Sum_probs=126.7
Q ss_pred HHHHHHHHhhhhchhhhhHHHhhhhhheeecccchh--h------hhhhchhhhhhhccCCCCCCccchhhHHHHHhhHh
Q 020634 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHI--E------AGTKLSEDCCRYGAENNQNINENILPKAAAIYGDA 118 (323)
Q Consensus 47 hq~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~--E------i~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a 118 (323)
-++||+---+||.+ =-+|++..+.+. -|..-. | -..-|++.--+||.+=+ .++.+.+|-..||.+
T Consensus 17 ~~~le~r~D~~k~~---~~~i~k~~~~~l-qpnp~~r~ek~~kk~p~~~Lgq~M~e~~~~lg---~~s~~g~aL~~~gea 89 (246)
T cd07618 17 LLQIERRLDTVRSV---SHNVHKRLIACF-QGQVGTDAEKRHKKLPLTALAQNMQEGSAQLG---EESLIGKMLDTCGDA 89 (246)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHc-CCChHHHHHHHhccCCHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHH
Confidence 46777777776544 447777777664 221111 1 13446777778888854 456799999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhcc--CC-C-hhhhhh--
Q 020634 119 RKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVRE--AP-N-PENVAK-- 192 (323)
Q Consensus 119 ~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~re--s~-n-~e~~~K-- 192 (323)
-+.+=.+|-++--.+-..|.+||+....+- |-++-+....-...|-+.+ ..|++.+.-. ++ | ..+..|
T Consensus 90 ~~kla~~~~~~d~~ie~~fl~PL~~~le~d-lk~I~K~RkkLe~~RLD~D-----~~K~r~~~a~~~~~~~~~~~~~K~~ 163 (246)
T cd07618 90 ENKLAFELSQHEVLLEKDILDPLNQLAEVE-IPNIQKQRKQLAKLVLDWD-----SARGRYNQAHKSSGTNFQAMPSKID 163 (246)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhHHhhHH-----HHHHHHHhccccCccccccccchhh
Confidence 999999988888888889999999887743 2233333333334444432 3344333111 11 1 122344
Q ss_pred -----hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 020634 193 -----LHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE 261 (323)
Q Consensus 193 -----Lq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~EMvsE 261 (323)
+..|+.|+.+-|...+. ++-.-| +=|..+ +.=|+..|+|=..||...++||+.+..+|-.-
T Consensus 164 ~l~ee~e~a~~k~E~~kD~~~~---dm~~~l-~~e~e~----~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~ 229 (246)
T cd07618 164 MLKEEMDEAGNKVEQCKDQLAA---DMYNFA-SKEGEY----AKFFVLLLEAQADYHRKALAVIEKVLPEIQAH 229 (246)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHH-HcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888877666 444433 223333 34588999999999999999999999998653
No 28
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=96.31 E-value=0.0043 Score=44.16 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=29.1
Q ss_pred eeeeccCCCcCCccceeeecCCEEEEE-EecCcchh
Q 020634 285 LAEAIHPFTAASEKELSLGVGDYVVVR-KVCYISFL 319 (323)
Q Consensus 285 laev~hpf~aese~ELsLsvGDyVVVR-qVs~~GWs 319 (323)
++.|+.+|.++...||||..||.|.|- .-.+.||-
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww 36 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWW 36 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEE
Confidence 367999999999999999999999996 77888883
No 29
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=96.27 E-value=0.36 Score=44.95 Aligned_cols=147 Identities=18% Similarity=0.338 Sum_probs=103.0
Q ss_pred hchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHH
Q 020634 87 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 166 (323)
Q Consensus 87 KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 166 (323)
-|++.--+||.+=. .++.+..|-..||.|...+=..+..+.-.+.+-+.+||+....+- -.-|..-|.-
T Consensus 68 ~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~d--------ik~i~k~RKk 136 (223)
T cd07615 68 LLGDCMLRYGRELG---EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKD--------LKEIGHHLKK 136 (223)
T ss_pred HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 57777788888854 455799999999999999999999999999999999999654332 1134445555
Q ss_pred HHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHhHHHHHHHHHHHHHhhhhH
Q 020634 167 AETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI---EAQQHRLTFQRLVAMVEGEKNY 243 (323)
Q Consensus 167 aE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeaEr~Y 243 (323)
.|..-.+.--.+.| .+..+ -.-++.|+.|..|-+.- |...|-.+ |.-| +.=|.+.|+|+-.|
T Consensus 137 Le~rRLd~D~~K~r--~~k~~--~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~----~~~L~~lv~AQl~Y 201 (223)
T cd07615 137 LEGRRLDFDYKKKR--QGKIP--DEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ----VSQLSVLIEAALDY 201 (223)
T ss_pred HHHHHHHHHHHHHc--CCCCc--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH----HHHHHHHHHHHHHH
Confidence 55444443333223 22222 34577888888876543 33334332 1222 34578999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 020634 244 HLRIAAILGDVEAEMV 259 (323)
Q Consensus 244 Hqrv~~ILd~l~~EMv 259 (323)
|+..++||..|..++.
T Consensus 202 h~~a~eiL~~l~~~l~ 217 (223)
T cd07615 202 HRQSTEILEDLQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999886
No 30
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=96.18 E-value=0.4 Score=44.33 Aligned_cols=186 Identities=12% Similarity=0.208 Sum_probs=141.0
Q ss_pred hhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccC---CCCCCccc-hhhHHHHHhhHhhHHHHHHHHHHHHHhhhh
Q 020634 61 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE---NNQNINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQ 136 (323)
Q Consensus 61 KhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~e---n~~~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~Q 136 (323)
.+|=++|++..=++|..|..=.---.+++..-+-|+-+ ++ .+++. .++.+-..|+.+-..||++|+.|+.--...
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~-~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~ 93 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDA-ETDDEICIARSLQEFAAVLRNLEDERTRMIENASEV 93 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888887765555566777777777733 11 12222 377888899999999999999999999999
Q ss_pred hhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHH
Q 020634 137 VLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAA 216 (323)
Q Consensus 137 V~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~a 216 (323)
+..||-.-+. -+|-.++--..+|||..+.-++-..-.+-=..| +.+ ..++.|+.-|.--+++---..=+=+-
T Consensus 94 l~~~L~~F~k-edi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k-----~K~--~~~eEA~~~L~~~r~~F~~~sLdYV~ 165 (207)
T cd07636 94 LITPLEKFRK-EQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSK-----KKE--SQLHEADSQVDLVRQHFYEVSLEYVF 165 (207)
T ss_pred HHHHHHHHHH-HHHHHHHHHhhhHhhhhhHHHHHHHHHhcCccc-----CCc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988765 466789999999999999988654332211011 112 26889999998888888777777777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 217 ALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 217 AM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
.+..|++-.-===++.|++.+.|=.+|...--+++.++.
T Consensus 166 qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~ 204 (207)
T cd07636 166 KVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 888888877777788999999999999988888887764
No 31
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.63 E-value=1.9 Score=40.08 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=127.7
Q ss_pred CCCcceechHHHHHHHHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHH
Q 020634 33 RSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAA 112 (323)
Q Consensus 33 ~~d~~v~DE~Elq~hq~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa 112 (323)
..|..+-|+ -++.+.||+ ++|..|||.-+=.+.+-....-+.-|...|++ | |+.++ + ..+-.++
T Consensus 8 T~D~~fe~~--~~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~-~--~~~~~----~-~~~~~~~ 71 (225)
T cd07590 8 TVDRELERE--VQKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQDLAS-G--PLCED----N-DELRNLV 71 (225)
T ss_pred CCChHHHHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c--ccCCC----C-hHHHHHH
Confidence 345555332 244555553 45677777666666665555666677777776 3 55443 1 2366799
Q ss_pred HHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchh-----hHHHHHHHHHHHHHHhHHHHHHHHhhhccCCCh
Q 020634 113 AIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDAR-----HLAQRYSRMRQEAETQAVEVSKRQQRVREAPNP 187 (323)
Q Consensus 113 ~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~ 187 (323)
-.|...-..|+.=-..++..+.+.|.+||.....=-|.-..+ |...=|||+|...+.- +.|-+ ..
T Consensus 72 e~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl-------~~K~~---k~ 141 (225)
T cd07590 72 EALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKL-------AEKEK---TG 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HhCcc---CC
Confidence 999999999996668889999999999998887666654443 4556688888777632 22311 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 020634 188 ENVAKLHAAEARMQELKANMAILGKEAAAALAAI---EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (323)
Q Consensus 188 e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~EM 258 (323)
.+-.||..||..+..-+..-..+..+.-.=|-.. ...==.-+||-|+.| +-.||.-.-.++.+|..-.
T Consensus 142 ~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~---Ql~f~~e~~k~~~~l~~~~ 212 (225)
T cd07590 142 PNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKS---QVLYYSQSTKIFTQLAPNL 212 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 2369999999999988877766665443322211 111112356666665 6689999999998887643
No 32
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=95.61 E-value=1.2 Score=41.32 Aligned_cols=140 Identities=11% Similarity=0.203 Sum_probs=104.7
Q ss_pred hhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCCh
Q 020634 108 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNP 187 (323)
Q Consensus 108 LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~ 187 (323)
++..-..|+++...++.+|+.|+.-+..-+..||-.-+- -+|-.++-...+||+-..+-++-..-.++=.+|.|+.
T Consensus 65 i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~k-edl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~--- 140 (207)
T cd07635 65 IDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRK-EQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEP--- 140 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCcc---
Confidence 467778999999999999999999999999999988754 4678899999999999999998766554443343321
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020634 188 ENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 188 e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
-++.|+.-|.--++.---..=+=+.++..|.+-..===|+.|++.+.|=.+|...--+++.++.
T Consensus 141 ----e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~ 204 (207)
T cd07635 141 ----QLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN 204 (207)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 2345555555555544444444556677777766666678899999999999888888887764
No 33
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=95.44 E-value=2 Score=40.03 Aligned_cols=184 Identities=18% Similarity=0.307 Sum_probs=117.8
Q ss_pred HHHHHHHHhhhhchhhhhHHHhhhhhheeec--cc-----------c-----hh----hhhhhchhhhhhhccCCCCCCc
Q 020634 47 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAI--GY-----------K-----HI----EAGTKLSEDCCRYGAENNQNIN 104 (323)
Q Consensus 47 hq~LekLY~STRaaKhFQrdIVRgvEGfis~--gs-----------K-----q~----Ei~~KLaeDc~KYG~en~~~~~ 104 (323)
.++||+.--+|+. +=-+|++..+-++-- |+ | -. --..-|++.--+||.+=. .
T Consensus 9 f~~le~~~d~t~~---~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg---~ 82 (223)
T cd07614 9 FKEMEKKVDLTSK---AVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELG---D 82 (223)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCC---C
Confidence 4567776666654 345677777666541 11 1 00 012347777788998854 4
Q ss_pred cchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccC
Q 020634 105 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA 184 (323)
Q Consensus 105 ~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res 184 (323)
++.++.|-..||.|...+=..|..+--.+.+-+.+||+.-..+- -..|..-|.-+|..-.+.--.+. |.+
T Consensus 83 dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~d--------ik~i~k~RKkLe~rRLdyD~~K~--r~~ 152 (223)
T cd07614 83 ESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKD--------LKEIQHHLKKLEGRRLDFDYKKK--RQG 152 (223)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH--cCC
Confidence 55799999999999999999999999999999999999765331 12455556655555444333222 233
Q ss_pred CChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 020634 185 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI---EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (323)
Q Consensus 185 ~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aV---EaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~EMv 259 (323)
..++ .-|+.|..|..+-+. .|...|-.| |+-| +.=|.+.|+|.=.||+..++||..|..++.
T Consensus 153 k~~e--eelr~a~ekFees~E-------~a~~~M~~il~~e~e~----~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 153 KIPD--EELRQAMEKFEESKE-------VAETSMHNLLETDIEQ----VSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred CCch--HHHHHHHHHHHHHHH-------HHHHHHHHHHhCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 234445555544332 222333222 1112 345789999999999999999999999886
No 34
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=94.55 E-value=3.8 Score=37.71 Aligned_cols=174 Identities=22% Similarity=0.260 Sum_probs=115.3
Q ss_pred chhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhh
Q 020634 59 GTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVL 138 (323)
Q Consensus 59 aaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ 138 (323)
.+|.+|||+-.=.+.+-..-.-|+.|+.-|++= |+... +| ...+......++.=-.++...|.++|.
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l---Y~p~~----~~------~~~~~~v~e~~d~~~~~l~~~l~~~Vl 93 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKEL---YEPDW----PG------REHLASIFEQLDLLWNDLEEKLSDQVL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcc----cc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999888888877777788888888543 33332 22 123344556666666678888999999
Q ss_pred hHHHHhhcCCCccchh-----hHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHH
Q 020634 139 DPLRAMITGAPLEDAR-----HLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKE 213 (323)
Q Consensus 139 ePLRaMv~GaPLEDAR-----hLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKE 213 (323)
+||.....=-|--..| |=..=|||+|...+.- .+.+. .+..||..||.+|+..+..-..|..+
T Consensus 94 ~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL-----------~~K~~-kde~KL~kae~el~~Ak~~Ye~lN~~ 161 (211)
T cd07588 94 GPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEAL-----------KAKKK-VDDQKLTKAEEELQQAKKVYEELNTE 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHH-----------Hhccc-ccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887555543332 2223499999888754 22222 34689999999999888877776655
Q ss_pred HHHHHHHHHHHhHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 020634 214 AAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (323)
Q Consensus 214 A~aAM~aVEaQQQrlTl--QRLiaMVeaEr~YHqrv~~ILd~l~~EMv 259 (323)
=--=|-..=+ -|+.| -=+-+++-++-.||.-+..+..+|.+-|.
T Consensus 162 L~~ELP~L~~--~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~ 207 (211)
T cd07588 162 LHEELPALYD--SRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD 207 (211)
T ss_pred HHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333322211 12211 12345667799999999999999988774
No 35
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.42 E-value=4 Score=37.44 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=105.0
Q ss_pred HhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhc
Q 020634 67 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (323)
Q Consensus 67 IVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~ 146 (323)
+++.+++++.-..+=-.-+.-|+.-|.-||+.- + ..|++|-..|+..-..|+-=|..-...+-.-|.+||+..++
T Consensus 23 l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E----~-~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~ 97 (211)
T cd07598 23 LCQDFAAYTRKTARLRDKGDELAKSINAYADTE----N-PSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGT 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554322222223344677788888652 2 35999999999999999988888888888899999987543
Q ss_pred C-CCccchhhHH-HHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 020634 147 G-APLEDARHLA-QRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ 224 (323)
Q Consensus 147 G-aPLEDARhLa-qRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQ 224 (323)
= ...-|++..+ ..|+++.+ -.+.-.|.|.. ||.+-.++..||++|+.-+.-..-. -..++.+
T Consensus 98 l~k~~k~~~K~~~~ar~~~~~--------~~~~leklk~~-~~~d~~~i~eaE~~l~~a~~d~~r~-------s~~l~ee 161 (211)
T cd07598 98 ICKHARDDLKNTFTARNKELK--------QLKQLEKLRQK-NPSDRQIISQAESELQKASVDANRS-------TKELEEQ 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhc-CCchhhHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 2 2233333211 12222222 11223344433 4444557778999998877633333 3334443
Q ss_pred hHHHHHHH------H-HHHHHhhhhHHHHHHHHHHHHHHHH
Q 020634 225 QHRLTFQR------L-VAMVEGEKNYHLRIAAILGDVEAEM 258 (323)
Q Consensus 225 QQrlTlQR------L-iaMVeaEr~YHqrv~~ILd~l~~EM 258 (323)
=.|.--+| + ...|+.|=.||..+++++..+...+
T Consensus 162 ~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~ 202 (211)
T cd07598 162 MDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDI 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 3 4789999999999999998887654
No 36
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.15 E-value=3.1 Score=35.11 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=111.3
Q ss_pred chhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHH
Q 020634 88 LSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEA 167 (323)
Q Consensus 88 LaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEa 167 (323)
|+.-|..++.... ..+..|+.+-..+|.+...+=.-...+....-..+.+||+-++.-.+ -+|.+-.+.+++.++.
T Consensus 44 lg~~~~~Ls~~e~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~--s~k~~l~~R~~~~~~~ 119 (218)
T cd07596 44 FGKALIKLAKCEE--EVGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQ--AVKETLDDRADALLTL 119 (218)
T ss_pred HHHHHHHHHhhcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3344444554432 11125899999999999999888999999999999999999884322 2555556655666666
Q ss_pred HHhHHHHHHHHh---hhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHH-------HHHHH
Q 020634 168 ETQAVEVSKRQQ---RVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQR-------LVAMV 237 (323)
Q Consensus 168 E~qa~eV~rRq~---k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQR-------LiaMV 237 (323)
+.--..+.+.+. |.+.+++ -+..|...++.++.++...+..+-+..-..-..+..+=.|..-.| |..++
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~-~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~ 198 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPG-IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFA 198 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555443 3333332 123577778888888887777777776666666666666665555 66788
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 020634 238 EGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 238 eaEr~YHqrv~~ILd~l~ 255 (323)
+....||+.+++++..+-
T Consensus 199 ~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 199 RLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 899999999999887763
No 37
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.61 E-value=6.1 Score=36.70 Aligned_cols=146 Identities=10% Similarity=0.192 Sum_probs=106.7
Q ss_pred ccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 020634 104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVRE 183 (323)
Q Consensus 104 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~re 183 (323)
.+.++.-+-..|+.+-..|+..|+.|..-+..-+..||-.-+.+ .|-+++-+..+||+-..+-++-..-.++=..| |
T Consensus 59 dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~-k- 135 (215)
T cd07601 59 DDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMES-DLAEIMTLKELFKAASNDHDGVLSKYSRLSKK-R- 135 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcC-C-
Confidence 34445557778999999999999999999999999999988876 56789999999999999999855444331111 1
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHH
Q 020634 184 APNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG-DVEA 256 (323)
Q Consensus 184 s~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd-~l~~ 256 (323)
+++.. .+.|+.-|.--++.---.-=+=..++..|++-..===|+.|++.+.|=.+|.+.--++|. +++.
T Consensus 136 -~~~~~---~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~p 205 (215)
T cd07601 136 -ENTKV---KIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEE 205 (215)
T ss_pred -CchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12111 235555555555555444445566777777777667788999999999999999999887 6654
No 38
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=92.05 E-value=0.13 Score=55.78 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=32.3
Q ss_pred eeeccCCCcCCccceeeecCCEEEEEEecCcchhh
Q 020634 286 AEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLR 320 (323)
Q Consensus 286 aev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse 320 (323)
-+++.+|.+++-.|||+.+||.|-+-+-.|+||+-
T Consensus 1054 ~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~ 1088 (1106)
T KOG0162|consen 1054 CEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWL 1088 (1106)
T ss_pred eeeeccCCCCCcccccccCCCEEEEeccCCCcchh
Confidence 36789999999999999999999999999999973
No 39
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.76 E-value=13 Score=35.88 Aligned_cols=159 Identities=15% Similarity=0.208 Sum_probs=100.5
Q ss_pred chhhhhhhccCCCCCCccchhhHHHHHhhHhh-HHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHH
Q 020634 88 LSEDCCRYGAENNQNINENILPKAAAIYGDAR-KHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 166 (323)
Q Consensus 88 LaeDc~KYG~en~~~~~~~~LarAa~~yg~a~-~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQE 166 (323)
|++---+||.+=+ .++.|.+|- ..|-+. ++|=.+..++---+-..|.+||--... --|-+.-|...+-.++|.+
T Consensus 62 Ls~~M~es~keLg---~dS~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e-~dL~~I~k~rKkL~k~~LD 136 (257)
T cd07620 62 LSISMAESFKDFD---AESSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE-EDLPEILKNKKQFAKLTTD 136 (257)
T ss_pred HHHHHHHHHhhCC---CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhHHHHHHHHHHHHhHHhh
Confidence 4444467887754 334566666 777776 999999999999999999999988766 2233445555566667766
Q ss_pred HHHhHHHHHHHHh-h-hccCCCh-------------hhhhh-------hHHHHHHHHHHHHHHHHhcHHHHHHHH---HH
Q 020634 167 AETQAVEVSKRQQ-R-VREAPNP-------------ENVAK-------LHAAEARMQELKANMAILGKEAAAALA---AI 221 (323)
Q Consensus 167 aE~qa~eV~rRq~-k-~res~n~-------------e~~~K-------Lq~AE~Kl~ELks~Ma~LGKEA~aAM~---aV 221 (323)
...- |+|. + .+.++.+ .+..| ++.|+.|+.+-|.. +++.|- +=
T Consensus 137 ~D~~-----K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~k 204 (257)
T cd07620 137 WNSA-----KSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATK 204 (257)
T ss_pred HHHH-----HHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 6543 2222 1 1222211 23466 45566666555432 233332 22
Q ss_pred HHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 020634 222 EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKES 267 (323)
Q Consensus 222 EaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~EMvsE~q~~Es 267 (323)
|..|- .=|+..||+=..||.+.++||+.+..+|-.---..++
T Consensus 205 E~e~a----~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~~~~~~~~ 246 (257)
T cd07620 205 EDSYA----NYFIRLLELQAEYHKNSLEFLDKNITELKENHSQKEP 246 (257)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 22222 2378889999999999999999999999765544443
No 40
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=90.65 E-value=15 Score=34.43 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=68.2
Q ss_pred HHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCC-CC--CccchhhHHHHHhhHhhHHHHHHH
Q 020634 50 LEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN-QN--INENILPKAAAIYGDARKHVEKEQ 126 (323)
Q Consensus 50 LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~-~~--~~~~~LarAa~~yg~a~~~mEkEr 126 (323)
.+.|..-|.-|-.|=.||..=+=== ..=--|.+.+|..-|.||..--. .+ .+..++-.|...+=+.-..+=.++
T Consensus 7 ~~~l~k~~~~Gi~~~~~i~~f~kER---a~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H 83 (253)
T cd07676 7 FDNLEKHTQWGIEVLEKYIKFVKER---TEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQH 83 (253)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554321100 00123567899999999965421 00 111245455554433333444899
Q ss_pred HHHHHHhhhhhhhHHHHhhcC----------------CCccch----hhHHHHHHHHHHHHHHh
Q 020634 127 EDFNRLLSSQVLDPLRAMITG----------------APLEDA----RHLAQRYSRMRQEAETQ 170 (323)
Q Consensus 127 e~l~r~L~~QV~ePLRaMv~G----------------aPLEDA----RhLaqRYdRmRQEaE~q 170 (323)
+.+-.-|.++|++||..++.- .|++.. .--...|++..+|+|.-
T Consensus 84 ~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A 147 (253)
T cd07676 84 EVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRA 147 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877761 122211 11356788888888865
No 41
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=90.23 E-value=0.17 Score=51.90 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=34.8
Q ss_pred heeeeeccCCCcCCccceeeecCCEEEEEEecCcchhhhc
Q 020634 283 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLRQM 322 (323)
Q Consensus 283 yFlaev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse~~ 322 (323)
.-.|.|++.|.+++-+||+|..||+|+|++--.--|.|-|
T Consensus 230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGE 269 (489)
T KOG4225|consen 230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGE 269 (489)
T ss_pred cchhhheeccccCCccccccCCCCEEEEEeeccCceeeee
Confidence 3459999999999999999999999999877777788754
No 42
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=89.12 E-value=15 Score=32.14 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=94.6
Q ss_pred chhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCC
Q 020634 106 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP 185 (323)
Q Consensus 106 ~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~ 185 (323)
..|+++-..||.+...+-.=.+.+....-....+||+-.+.-.. -++.+-.+=+++..+-+.-..++.+++.....-.
T Consensus 78 ~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~--svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 78 KSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIE--SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLK 155 (236)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45899999999888877666666666666667788886654322 2344333444555666777777777776654333
Q ss_pred -C-hhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHHH
Q 020634 186 -N-PENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQR-------LVAMVEGEKNYHLRIAAILGDVE 255 (323)
Q Consensus 186 -n-~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQR-------LiaMVeaEr~YHqrv~~ILd~l~ 255 (323)
+ ....-|+..++..+.+++..+..+-++--..-..+-.-=.|.--.| |..+++..-.||+.++++...+.
T Consensus 156 ~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~ 234 (236)
T PF09325_consen 156 ASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFL 234 (236)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 2 2335788888888888888887766665444443333223333222 56677888888888888776653
No 43
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.49 E-value=0.57 Score=51.37 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=27.7
Q ss_pred eeeeeccCCCcCCccceeeecCCEEEEEEecCcchhh
Q 020634 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLR 320 (323)
Q Consensus 284 Flaev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse 320 (323)
=+|.||-||.|.+.--|||.+|..|.+|+-+++||-|
T Consensus 980 eiAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWe 1016 (1118)
T KOG1029|consen 980 EIAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWE 1016 (1118)
T ss_pred hhhhhhhhhhccCchhccccCccEEEEEecCCCccch
Confidence 5677777777777777777777777777777777754
No 44
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=84.35 E-value=43 Score=32.70 Aligned_cols=138 Identities=17% Similarity=0.307 Sum_probs=94.7
Q ss_pred ccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHh--HHHHHHHHhhh
Q 020634 104 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQ--AVEVSKRQQRV 181 (323)
Q Consensus 104 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~q--a~eV~rRq~k~ 181 (323)
..+.|++|-..|+.+...+..-|-.+-..+-+....||+.-+.. --..=.++|+.++.- -.|+.|-..|.
T Consensus 146 ~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~--------~~~~a~k~RkkV~~sRL~~D~~R~~~k~ 217 (289)
T PF10455_consen 146 DEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT--------DFKKANKARKKVENSRLQFDAARANLKN 217 (289)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34679999999999999999999999999999999999875532 223334555555544 45666666665
Q ss_pred ccCC-C-hhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 020634 182 REAP-N-PENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (323)
Q Consensus 182 res~-n-~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~EM 258 (323)
+..| + .+.-..|+.||- |+-++ =.+|+.-|-.|=.-=-- +.-|-.+|.|=..||+..+++|..+-.++
T Consensus 218 ~~~pekee~~r~~lE~aED---eFv~a----TeeAv~~Mk~vl~~~e~--l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 218 KAKPEKEEQLRVELEQAED---EFVSA----TEEAVEVMKEVLDNSEP--LRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred cCCcccCHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333 3 333445566665 33333 35677777665433222 35577789999999999999999876543
No 45
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=82.44 E-value=45 Score=31.56 Aligned_cols=184 Identities=10% Similarity=0.154 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCC-CCCCccchhhHHHHHhhHhhHHH
Q 020634 44 MQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHV 122 (323)
Q Consensus 44 lq~hq~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en-~~~~~~~~LarAa~~yg~a~~~m 122 (323)
-|-||-+++.|-.|+- .-.+ -.++|.--..|---| +|...+..++.+-..|+.+-..|
T Consensus 19 ~~~~~~~~~~~~a~~~-------ls~a--------------~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El 77 (215)
T cd07631 19 NQLFQAMHRIYDAQNE-------LSAA--------------THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL 77 (215)
T ss_pred HHHHHHHHHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHH
Confidence 4779999999988761 1111 123444444454222 33345566888889999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCC-hhhhhhhHHHHHHHH
Q 020634 123 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPN-PENVAKLHAAEARMQ 201 (323)
Q Consensus 123 EkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n-~e~~~KLq~AE~Kl~ 201 (323)
+.+|..|..-...-+..||-.-+- -+|-.++-+..+|||...+-++--.-.++=..+.++.-- .|...=+..+..+-.
T Consensus 78 ~~~~~~L~~q~~~sl~~pL~~F~k-edL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~ 156 (215)
T cd07631 78 SSCHAVLSTQLADAMMFPITQFKE-RDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999998888889999988554 577889999999999999988765544432212111000 011112222111111
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHH
Q 020634 202 ELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAA-ILGDVEA 256 (323)
Q Consensus 202 ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~-ILd~l~~ 256 (323)
.++| +=+.++..+++-..=-=|+.|++.++|=.+|...--+ ++.+++.
T Consensus 157 --~~aL-----dYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~ 205 (215)
T cd07631 157 --QTMM-----HYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEE 205 (215)
T ss_pred --HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2222 2344566666666656678899999999999888888 4445543
No 46
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=80.37 E-value=2.1 Score=42.56 Aligned_cols=75 Identities=27% Similarity=0.316 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCC----CCccchhhee---eeeccCCCcCCccceeeecCCEEEEEEecCcc
Q 020634 245 LRIAAILGDVEAEMVSEKQRKESAPPVIPSE----NSSQKAVYFL---AEAIHPFTAASEKELSLGVGDYVVVRKVCYIS 317 (323)
Q Consensus 245 qrv~~ILd~l~~EMvsE~q~~Es~~~~~~~~----~~~~~~~yFl---aev~hpf~aese~ELsLsvGDyVVVRqVs~~G 317 (323)
.+-.+|...|.+-.-+--.++-|++-.+++. .-...--|=| |-|-+.|.|+-|.||||-.||.|.|=.-++.|
T Consensus 62 ~~~~si~knlkd~~g~kt~~k~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDG 141 (379)
T KOG4226|consen 62 LKKGSIVKNLKDTLGLKTRRKTSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDG 141 (379)
T ss_pred hhhhHHHHhhhhccccccccCCCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCc
Confidence 3456777777776655434444433222111 1111112222 55788999999999999999999999999999
Q ss_pred hh
Q 020634 318 FL 319 (323)
Q Consensus 318 Ws 319 (323)
|-
T Consensus 142 WW 143 (379)
T KOG4226|consen 142 WW 143 (379)
T ss_pred ce
Confidence 94
No 47
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=78.97 E-value=0.67 Score=49.36 Aligned_cols=66 Identities=26% Similarity=0.214 Sum_probs=46.1
Q ss_pred HHHHHhhhhhhcCCCCCCCCCCC----ccchhheeeeeccCCCcCCccceeeecCCEEEEEEecCcchhh
Q 020634 255 EAEMVSEKQRKESAPPVIPSENS----SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLR 320 (323)
Q Consensus 255 ~~EMvsE~q~~Es~~~~~~~~~~----~~~~~yFlaev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse 320 (323)
-++-.||+||==++-.|...... .+..+-==..++|+|.+.-..||+|..||.|-|.+-.|.||-+
T Consensus 576 ~a~s~Sd~~RWi~Al~p~~~~~~~~~i~e~~dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~ 645 (695)
T KOG3523|consen 576 SAESQSDRQRWISALRPPSSTKPPEKIYEEWDCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLE 645 (695)
T ss_pred cCCchHHHHHHHHhcCCCCCCCChhhhhhccCCChhheeeccccCCCceeeeehhhhhhhhhcCCCcccc
Confidence 34567788876554443211111 1222222357899999999999999999999999999999975
No 48
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=77.07 E-value=64 Score=30.15 Aligned_cols=139 Identities=15% Similarity=0.253 Sum_probs=88.3
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhH-------HHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 020634 111 AAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHL-------AQRYSRMRQEAETQAVEVSKRQQRVRE 183 (323)
Q Consensus 111 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhL-------aqRYdRmRQEaE~qa~eV~rRq~k~re 183 (323)
+-.....-+..+|..++.+.+.|-..+..||.-=|- +|.+-+ +.-|.+.|++.+--..|..|=|.|++-
T Consensus 69 ~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e----~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~ 144 (223)
T cd07605 69 ALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLE----LDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQK 144 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333466678899999999999999999998764322 233333 345778888888888888877777775
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 020634 184 APNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGD 253 (323)
Q Consensus 184 s~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~ 253 (323)
+..+....||..+-.-+.+...-|..+=+.+--...-=|--.=..=+.++-..++.|-+||...-..|..
T Consensus 145 ~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~ 214 (223)
T cd07605 145 SGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLST 214 (223)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4344555566666555555555444443333222221222222233466777889999999887776654
No 49
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.71 E-value=73 Score=30.08 Aligned_cols=107 Identities=11% Similarity=0.146 Sum_probs=73.0
Q ss_pred hhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCC--CCccc-hhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhh
Q 020634 63 FQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLD 139 (323)
Q Consensus 63 FQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~--~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~e 139 (323)
|=++||+-.-|.|.+|..=.-..++++.-.+-++-+-.. .|.+. .++.+-..||..-..||++|..|+.--...|..
T Consensus 17 ~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~ 96 (207)
T cd07633 17 FIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLIK 96 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777766666666677666666655210 01111 278888899999999999999999999999999
Q ss_pred HHHHhhcCCCccchhhHHHHHHHHHHHHHHh
Q 020634 140 PLRAMITGAPLEDARHLAQRYSRMRQEAETQ 170 (323)
Q Consensus 140 PLRaMv~GaPLEDARhLaqRYdRmRQEaE~q 170 (323)
||..-+-- -+.-++.-...||+.+.+-++-
T Consensus 97 ~L~~F~Ke-di~~~Ke~KK~FdK~se~~~~a 126 (207)
T cd07633 97 PLENFRKE-QIGFTKERKKKFEKDSEKFYSL 126 (207)
T ss_pred HHHHHHHH-HHHHHHHHhhhhhhhhhHHHHH
Confidence 99877641 1112445566777777776653
No 50
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=75.26 E-value=8.8 Score=37.37 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=28.3
Q ss_pred cchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccC
Q 020634 151 EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA 184 (323)
Q Consensus 151 EDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res 184 (323)
.+---+.|||.|||.|++-...||.+++...+++
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~ 120 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKES 120 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3444678999999999999999999998776654
No 51
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=74.77 E-value=2.7 Score=40.22 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=27.4
Q ss_pred eeccCCCcCCccceeeecCCEEEEEEecCcch
Q 020634 287 EAIHPFTAASEKELSLGVGDYVVVRKVCYISF 318 (323)
Q Consensus 287 ev~hpf~aese~ELsLsvGDyVVVRqVs~~GW 318 (323)
.++..|.|+++.|+|+--|||||--|--.+||
T Consensus 211 ra~ydysaqdedevsF~dgd~ivnvq~iddGW 242 (264)
T KOG1702|consen 211 RAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGW 242 (264)
T ss_pred hhhccCcccCcceeEEecCCeEEEEEeccCCc
Confidence 46778999999999999999999766666677
No 52
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=72.93 E-value=69 Score=28.52 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=84.3
Q ss_pred HHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCC--ccchhhHHHHHhhHhhHHHHHH
Q 020634 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNI--NENILPKAAAIYGDARKHVEKE 125 (323)
Q Consensus 48 q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~--~~~~LarAa~~yg~a~~~mEkE 125 (323)
-.+.+...|.++--..|.+++...++++.... -+.+++... ...++ .....|..+...|..+
T Consensus 23 k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~---------------~~~~~~~~~~~~~~~~-~~~~~y~~~~~~l~~~ 86 (216)
T cd07599 23 EQSKAFRDSWRSILTHQIAFAKEFAELYDPIV---------------GPKESVGSHPAPESTL-ARLSRYVKALEELKKE 86 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC---------------CCCcCcCCCCCcHHHH-HHHHHHHHHHHHHHHH
Confidence 34444455555666777777777777654211 111211000 11122 3345678888888777
Q ss_pred HHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHH-------HHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHH
Q 020634 126 QEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQR-------YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEA 198 (323)
Q Consensus 126 re~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqR-------YdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~ 198 (323)
=...+..+.+.|..|+..+..= +.+.+.+-.+ |||+|...+. ..+.|. + .++..-.||..||.
T Consensus 87 ~~~~l~~i~~~V~~P~~~~~~~--~~~i~k~IkKR~~k~lDyd~~~~k~~k------~~~~k~-~-~~~kd~~kl~kae~ 156 (216)
T cd07599 87 LLEELEFFEERVILPAKELKKY--IKKIRKTIKKRDHKKLDYDKLQNKLNK------LLQKKK-E-LSLKDEKQLAKLER 156 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH------HHhcCC-C-CChhHHHHHHHHHH
Confidence 7777889999999999998863 3444444433 6777766654 133331 1 25666889999999
Q ss_pred HHHHHHHHHHHhcH
Q 020634 199 RMQELKANMAILGK 212 (323)
Q Consensus 199 Kl~ELks~Ma~LGK 212 (323)
+|.+.+..-..|..
T Consensus 157 ~l~~a~~~y~~lN~ 170 (216)
T cd07599 157 KLEEAKEEYEALNE 170 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877766644
No 53
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=71.46 E-value=78 Score=28.52 Aligned_cols=193 Identities=16% Similarity=0.258 Sum_probs=120.4
Q ss_pred HHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHH
Q 020634 48 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 127 (323)
Q Consensus 48 q~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre 127 (323)
--||+|.. +|+.|++ ++.+.+.+|.--.+-.-|+++-|-. .+ .+. -|.-+-..+...+..+|.+++
T Consensus 10 P~~e~lv~---~~~kY~~----al~~~~~a~~~f~dal~ki~~~A~~----s~--~s~-~lG~~L~~~s~~~r~i~~~~~ 75 (219)
T PF08397_consen 10 PAWENLVS---LGKKYQK----ALRAMSQAAAAFFDALQKIGDMASN----SR--GSK-ELGDALMQISEVHRRIENELE 75 (219)
T ss_dssp HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT----SS--SHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccC----CC--ccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 34566553 4666664 4466777777777777888876543 11 122 377777788889999999999
Q ss_pred HHHHHhhhhhhhHHHHhhcCCCc---cchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHH
Q 020634 128 DFNRLLSSQVLDPLRAMITGAPL---EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK 204 (323)
Q Consensus 128 ~l~r~L~~QV~ePLRaMv~GaPL---EDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELk 204 (323)
.+.+.|-+.+.-||..=+-.-+= ..=++...-|.+.+.+.+-...|..|=+.|.+.+.+ +.-..+..+-..+.+..
T Consensus 76 ~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~-~~~~~~~~~~~~v~~~~ 154 (219)
T PF08397_consen 76 EVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRKGKD-DQKYELKEALQDVTERQ 154 (219)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-cccHHHHHHHHHHHHHH
Confidence 99999999999999865542211 011223455666777777777776665555553322 23344444444455555
Q ss_pred HHHHHhcHHHHHHHHHHHHHhHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 020634 205 ANMAILGKEAAAALAAIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAE 257 (323)
Q Consensus 205 s~Ma~LGKEA~aAM~aVEaQQQrlT--lQRLiaMVeaEr~YHqrv~~ILd~l~~E 257 (323)
+-|...=+++- =.|.-...-|.. +.++-..|..|=+||-...++|...=..
T Consensus 155 ~ele~~~~~~~--r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~ 207 (219)
T PF08397_consen 155 SELEEFEKQSL--REALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDD 207 (219)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55554333333 233334444554 5788889999999999877777654443
No 54
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.89 E-value=2.6 Score=46.51 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=30.8
Q ss_pred heeeeeccCCCcCCccceeeecCCEEEEE--EecCcchh
Q 020634 283 YFLAEAIHPFTAASEKELSLGVGDYVVVR--KVCYISFL 319 (323)
Q Consensus 283 yFlaev~hpf~aese~ELsLsvGDyVVVR--qVs~~GWs 319 (323)
++--.++.||+|-++.|+|+..||+|.|- ++.-.||-
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWl 731 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWL 731 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehhccCCcccc
Confidence 45567899999999999999999999996 45556773
No 55
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=67.71 E-value=1.1e+02 Score=28.58 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=80.3
Q ss_pred hhhhhchhhhhhhccCC-CCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCC------Cccchh-
Q 020634 83 EAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA------PLEDAR- 154 (323)
Q Consensus 83 Ei~~KLaeDc~KYG~en-~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~Ga------PLEDAR- 154 (323)
|.+.+|..=|.+|.... |..+.|++.+.+-..+=+.-...-++|+.+-..|.++|++||..++.-. =.++..
T Consensus 37 EYA~~L~~L~kq~~k~~~~~~~~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~k 116 (237)
T cd07657 37 EYASTLGSLANQGLKIEAGDDLQGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQ 116 (237)
T ss_pred HHHHHHHHHHHhhCcCCCcccCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665432 3123355555553333334444457889999999999999998776421 111222
Q ss_pred -------------hHHHHHHHHHHHHHHhHHHHHHHHhhhccCCC--hhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 020634 155 -------------HLAQRYSRMRQEAETQAVEVSKRQQRVREAPN--PENVAKLHAAEARMQELKANMAILGKEAAAALA 219 (323)
Q Consensus 155 -------------hLaqRYdRmRQEaE~qa~eV~rRq~k~res~n--~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~ 219 (323)
-..-.|++..+|+|.- +.|..++.+ .-.-++++-|..|+++-..-|...=-|=+.++.
T Consensus 117 l~~el~~~~~el~k~Kk~Y~~~~~e~e~A-------r~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~ 189 (237)
T cd07657 117 IDEQYKKLTDEVEKLKSEYQKLLEDYKAA-------KSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALL 189 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233455555555432 222222110 001234455555555555555443334455555
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 020634 220 AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (323)
Q Consensus 220 aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~ 256 (323)
.....|+ .-||+-+=.|||.|.+
T Consensus 190 ~aN~~q~--------------~yY~~~lP~ll~~lQ~ 212 (237)
T cd07657 190 EAQEHEE--------------DYRTLLLPGLLNSLQS 212 (237)
T ss_pred HHHHHHH--------------HHHHhHHHHHHHHHHH
Confidence 5555443 5688888888877653
No 56
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=64.27 E-value=1.3e+02 Score=28.49 Aligned_cols=177 Identities=11% Similarity=0.225 Sum_probs=120.1
Q ss_pred eeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccch
Q 020634 74 FTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDA 153 (323)
Q Consensus 74 fis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDA 153 (323)
+...|.-+++--.-+++--++-|.--. |.++.-++++-+.||.....|-+=..+|+--+..=|.-||-..+-| -|-+-
T Consensus 28 ~~~sG~~yv~~~~~f~~~L~~LG~~~l-~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~v 105 (215)
T cd07642 28 IHTSGLAHVENEEQYTQALEKFGSNCV-CRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGV 105 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHh
Confidence 456666677766777777777776422 1244568999999999999999988888888888899999998875 23344
Q ss_pred h-hHHHHHHHHHHHHHHhHHHHHHH---HhhhccCCChhhhhhhHHH-HHHHHHHHHHHHHhcHHHHH---HHHHHHHHh
Q 020634 154 R-HLAQRYSRMRQEAETQAVEVSKR---QQRVREAPNPENVAKLHAA-EARMQELKANMAILGKEAAA---ALAAIEAQQ 225 (323)
Q Consensus 154 R-hLaqRYdRmRQEaE~qa~eV~rR---q~k~res~n~e~~~KLq~A-E~Kl~ELks~Ma~LGKEA~a---AM~aVEaQQ 225 (323)
+ .+.+-||+.|.+-|+-.....+- ..|.-+ +.+.+.. |---++|.++=....-+|+- =+..+..-|
T Consensus 106 K~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~------~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk 179 (215)
T cd07642 106 KGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHG------MIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKK 179 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccc------cchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 56777999999999876533322 222111 1122211 11123344444444445554 455566666
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 020634 226 HRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 258 (323)
Q Consensus 226 QrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~EM 258 (323)
-+==||.|+....|=-+|++.=...|+.|+-=|
T Consensus 180 ~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 180 GVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666789999999999999999999999997644
No 57
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=63.27 E-value=1.1e+02 Score=27.36 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=43.3
Q ss_pred hhhhhhchhhhhhhccCCC-CCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhc
Q 020634 82 IEAGTKLSEDCCRYGAENN-QNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (323)
Q Consensus 82 ~Ei~~KLaeDc~KYG~en~-~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~ 146 (323)
.|.+.+|..=|++|..-.. +...+.++..|-..+=+.-..+-+-+..+-..|.++|.+||..++-
T Consensus 36 ~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~ 101 (251)
T cd07653 36 QEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS 101 (251)
T ss_pred HHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888764321 1112235666655555555556677888888899999999988874
No 58
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=59.13 E-value=1.6e+02 Score=27.67 Aligned_cols=182 Identities=13% Similarity=0.158 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHH
Q 020634 45 QRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEK 124 (323)
Q Consensus 45 q~hq~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEk 124 (323)
.+.+.||+ ++|.+|||.=+=.+.+-+.-.-|+.|+.-|++ =|+.... | ...+......++.
T Consensus 19 ~rf~~le~------~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e---~Y~~~~~----~------~~~~~~v~e~~d~ 79 (211)
T cd07612 19 MNLNMQQS------DGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD---IYEPDWD----G------HEDLGAIVEGEDL 79 (211)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCcC----c------ccHHHHHHhccHH
Confidence 44555553 57788888765555444445556666666666 3454432 1 1122333344555
Q ss_pred HHHHHHHHhhhhhhhHHHHhhcCCCccchh-----hHHHHHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHH
Q 020634 125 EQEDFNRLLSSQVLDPLRAMITGAPLEDAR-----HLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEAR 199 (323)
Q Consensus 125 Ere~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqRYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~K 199 (323)
=.+++...+.++|.+||-..+.=-|=-..+ |=-.=|||.|...+... +.+. ....||..||..
T Consensus 80 ~~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~-----------~k~~-kD~~KL~kAe~e 147 (211)
T cd07612 80 LWNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQ-----------NAKK-KDDAKIAKAEEE 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------hccc-ccHHHHHHHHHH
Confidence 677888899999999998876555533332 22234888888776432 2222 237899999999
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHhHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 020634 200 MQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV 259 (323)
Q Consensus 200 l~ELks~Ma~LGKEA~aAM~aVEaQQQrlTl--QRLiaMVeaEr~YHqrv~~ILd~l~~EMv 259 (323)
|+.-+..-..|..+=--=|-..= +-|+.| --+=|+|-.+-.||.-+..|...|.+-|.
T Consensus 148 l~~Ak~~ye~lN~~L~~ELP~L~--~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~ 207 (211)
T cd07612 148 FNRAQVVFEDINRELREELPILY--DSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMK 207 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777666544322211110 112221 11235667889999999999999887764
No 59
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=59.05 E-value=1.7e+02 Score=27.93 Aligned_cols=28 Identities=7% Similarity=0.110 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHhhc
Q 020634 119 RKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (323)
Q Consensus 119 ~~~mEkEre~l~r~L~~QV~ePLRaMv~ 146 (323)
-..+-++|+.+-..|.+||++||..++.
T Consensus 79 t~~~A~~~~~~ae~l~~~i~~~l~~l~~ 106 (264)
T cd07654 79 LDAVAQSRQNRCEAYRRYISEPAKTGRS 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445588999999999999999987763
No 60
>PF14191 YodL: YodL-like
Probab=57.92 E-value=5.7 Score=33.28 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=22.2
Q ss_pred eccCCCcCCccceeeecCCEEEEEE--------ecCcchhh
Q 020634 288 AIHPFTAASEKELSLGVGDYVVVRK--------VCYISFLR 320 (323)
Q Consensus 288 v~hpf~aese~ELsLsvGDyVVVRq--------Vs~~GWse 320 (323)
+-||-+-... ||||+|.|++.+ |.+.||.+
T Consensus 61 ~~~P~df~Gh---sLSvSDVV~l~~~g~~~~yYvDs~GF~e 98 (103)
T PF14191_consen 61 VDHPEDFKGH---SLSVSDVVELYDGGKSSFYYVDSFGFKE 98 (103)
T ss_pred cCCCCCCCCC---ccChheEEEEEcCCceEEEEECCCCCeE
Confidence 3466555443 899999999987 67788865
No 61
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.99 E-value=1.2e+02 Score=25.53 Aligned_cols=80 Identities=25% Similarity=0.338 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHHHHhh-hccCC-ChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHH
Q 020634 152 DARHLAQRYSRMRQEAETQAVEVSKRQQR-VREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT 229 (323)
Q Consensus 152 DARhLaqRYdRmRQEaE~qa~eV~rRq~k-~res~-n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlT 229 (323)
+......+-..+|++.+.|+.-+..-+.+ -+|-- .++.+..|......+.++++.+..|=.+|-+|-..++.-+.-..
T Consensus 18 ~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~ 97 (132)
T PF07926_consen 18 QEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWE 97 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44556667788999999999888887777 44444 78889999999999999999999999999999888876655444
Q ss_pred HH
Q 020634 230 FQ 231 (323)
Q Consensus 230 lQ 231 (323)
-+
T Consensus 98 ~q 99 (132)
T PF07926_consen 98 EQ 99 (132)
T ss_pred HH
Confidence 33
No 62
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=52.58 E-value=10 Score=39.40 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=32.8
Q ss_pred eeeccCCCcCCccceeeecCCEEEEEEecCcchhh
Q 020634 286 AEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLR 320 (323)
Q Consensus 286 aev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse 320 (323)
=+++.+|.++-+-||-|--||.|-|=+-...||-+
T Consensus 435 yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfv 469 (489)
T KOG4225|consen 435 YRALYSYRPQNEDELELREGDIIDVMEKCDDGWFV 469 (489)
T ss_pred ceeccccCCCCchhheeccCCEEeeeecccCccee
Confidence 58999999999999999999999999999999954
No 63
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=50.19 E-value=3.9 Score=42.78 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=33.6
Q ss_pred hhheeeeeccCCCcCCccceeeecCCEEEEEEecCcchhh
Q 020634 281 AVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLR 320 (323)
Q Consensus 281 ~~yFlaev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse 320 (323)
..-=.-.|.+.|..+.|.||+|.|||.|-|-.-.-.||.+
T Consensus 98 ~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~ 137 (627)
T KOG4348|consen 98 PQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWK 137 (627)
T ss_pred ccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhh
Confidence 3445667899999999999999999999877767789976
No 64
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=49.66 E-value=9.5 Score=38.40 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=33.0
Q ss_pred eeeeeccCCCcCCccceeeecCCEEEEEEecCcchh
Q 020634 284 FLAEAIHPFTAASEKELSLGVGDYVVVRKVCYISFL 319 (323)
Q Consensus 284 Flaev~hpf~aese~ELsLsvGDyVVVRqVs~~GWs 319 (323)
.+-.++.+|.+..+.||.+..||.|++-.-...||-
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~ 399 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPT 399 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCc
Confidence 577788999999999999999999999999999984
No 65
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.18 E-value=11 Score=38.98 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=26.4
Q ss_pred eeccCCCcCCccceeeecCCEEEEE-EecCcch
Q 020634 287 EAIHPFTAASEKELSLGVGDYVVVR-KVCYISF 318 (323)
Q Consensus 287 ev~hpf~aese~ELsLsvGDyVVVR-qVs~~GW 318 (323)
.++..|.|..++|||+..||+|.|= ++.|+=|
T Consensus 219 RALYDFeAaE~nELsFkaGdIItVLd~s~~~WW 251 (462)
T KOG2199|consen 219 RALYDFEAAEDNELSFKAGDIITVLDDSDPNWW 251 (462)
T ss_pred hhhhcccccCCCccceecCcEEEEcccCCcchh
Confidence 4688999999999999999999775 4555555
No 66
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=48.62 E-value=2.5e+02 Score=26.86 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=81.4
Q ss_pred hhhhhhchhhhhhhccCCCCCCccc-hh-hHHHHHhhHhhHHHH---HHHHHHHHHhhhhhhhHHHHhhcCCCccchh--
Q 020634 82 IEAGTKLSEDCCRYGAENNQNINEN-IL-PKAAAIYGDARKHVE---KEQEDFNRLLSSQVLDPLRAMITGAPLEDAR-- 154 (323)
Q Consensus 82 ~Ei~~KLaeDc~KYG~en~~~~~~~-~L-arAa~~yg~a~~~mE---kEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-- 154 (323)
-|.+.||..=|+||+.--. ..... .+ +.+ .|-+-...++ .+||.+-.-|.+||+.||-.++ .+|+..|
T Consensus 36 ~eYakkL~~L~Kky~~KK~-~~~e~p~~t~~~--s~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~--~~l~~~rk~ 110 (252)
T cd07675 36 QNYAKQLRNLVKKYCPKRS-SKDEEPRFTSCL--SFYNILNELNDYAGQREVVAEEMGHRVYGELMRYS--HDLKGERKM 110 (252)
T ss_pred HHHHHHHHHHHHHhccccC-CCCCCccccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHH
Confidence 4678899999999976433 11111 12 222 2655555554 6899999999999999998877 4444433
Q ss_pred h------H--------------HHHHHHHHHHHHHhHHHHHHHHhhhccCC-Chhhhhh--hHHHHHHHHHHHHHHHHhc
Q 020634 155 H------L--------------AQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAK--LHAAEARMQELKANMAILG 211 (323)
Q Consensus 155 h------L--------------aqRYdRmRQEaE~qa~eV~rRq~k~res~-n~e~~~K--Lq~AE~Kl~ELks~Ma~LG 211 (323)
| | ..+|++.++|+|.-- .+.-.+. ++ +.+| ++-+..++..=...|. -.
T Consensus 111 ~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~-------~k~~ka~~d~-~~tk~~~eK~k~~~~~~~q~~e-~a 181 (252)
T cd07675 111 HLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQ-------QSYERLDNDT-NATKSDVEKAKQQLNLRTHMAD-ES 181 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcccCc-ccCHHHHHHHHHHHHHHHHHHH-HH
Confidence 2 1 246777777776532 1211111 11 1222 3344444444333333 23
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 020634 212 KEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 256 (323)
Q Consensus 212 KEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~ 256 (323)
|.-=+....+=.. .-.+-||+-+-+|||.|.+
T Consensus 182 Kn~Y~~~L~~~N~-------------~q~k~Y~e~mP~vfd~lQ~ 213 (252)
T cd07675 182 KNEYAAQLQNFNG-------------EQHKHFYIVIPQIYKQLQE 213 (252)
T ss_pred HHHHHHHHHHHHH-------------hhHhHHHHHHHHHHHHHHH
Confidence 3222222222111 2346799999999999876
No 67
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=47.21 E-value=2.3e+02 Score=26.08 Aligned_cols=133 Identities=17% Similarity=0.227 Sum_probs=86.1
Q ss_pred hchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHH-hhhh
Q 020634 58 RGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRL-LSSQ 136 (323)
Q Consensus 58 RaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~-L~~Q 136 (323)
.+++-+||++-.=.+.+.+..+-|+.|+.-|++ =|+...+ . -...++..|+.+-..+..+-..-+.. +...
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~---lY~p~~~---~--~~~~~~~~y~~~v~~l~~~~~~el~~~~~~~ 96 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS---FYGDAGD---K--DGAMLSQEYKQAVEELDAETVKELDGPYRQT 96 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCC---c--cHhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456788888888888887777777666655554 3555542 1 12457778888888776555444444 8889
Q ss_pred hhhHHHHhhcCCCccchhhHHH-------HHHHHHHHHHHhHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHH
Q 020634 137 VLDPLRAMITGAPLEDARHLAQ-------RYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAI 209 (323)
Q Consensus 137 V~ePLRaMv~GaPLEDARhLaq-------RYdRmRQEaE~qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~ 209 (323)
|.+|+-.+..=-| +.+.+.. =|||+|...+.- +.|... + ..||..||.+|.+-+..-..
T Consensus 97 V~~Pl~~~~~~~~--~i~k~IkKR~~KllDYD~~~~k~~kl-------~~K~~k--d---~~kL~kae~el~~a~~~Ye~ 162 (224)
T cd07591 97 VLDPIGRFNSYFP--EINEAIKKRNHKLLDYDAARAKVRKL-------IDKPSE--D---PTKLPRAEKELDEAKEVYET 162 (224)
T ss_pred HHHHHHHHHHHhh--hHHHHHHHHHhhHhhHHHHHHHHHHH-------HhcccC--C---HHHHHHHHHHHHHHHHHHHH
Confidence 9999988864333 3333332 388888777643 223211 1 28999999999887776655
Q ss_pred hcH
Q 020634 210 LGK 212 (323)
Q Consensus 210 LGK 212 (323)
|..
T Consensus 163 lN~ 165 (224)
T cd07591 163 LND 165 (224)
T ss_pred HHH
Confidence 543
No 68
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.96 E-value=30 Score=30.14 Aligned_cols=55 Identities=31% Similarity=0.442 Sum_probs=37.8
Q ss_pred CCCccchhhH-------HHHHHHHHHHHHHhHHHHHHHHhhhcc--------CCChhhhhhhHHHHHHHH
Q 020634 147 GAPLEDARHL-------AQRYSRMRQEAETQAVEVSKRQQRVRE--------APNPENVAKLHAAEARMQ 201 (323)
Q Consensus 147 GaPLEDARhL-------aqRYdRmRQEaE~qa~eV~rRq~k~re--------s~n~e~~~KLq~AE~Kl~ 201 (323)
.+|+||=..| ++||--|||=||.-+...+---.|... ....|.+-||++|-+||.
T Consensus 47 e~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~kLEaAa~~Ld 116 (120)
T KOG4559|consen 47 EAPIEDYKLLEEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTDKLEAAAAKLD 116 (120)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5799998776 699999999999877654433333211 014566778888888775
No 69
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=45.34 E-value=13 Score=39.04 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=29.4
Q ss_pred eeeeccCCCcCCccceeeecCCEEEEE--EecCcchhh
Q 020634 285 LAEAIHPFTAASEKELSLGVGDYVVVR--KVCYISFLR 320 (323)
Q Consensus 285 laev~hpf~aese~ELsLsvGDyVVVR--qVs~~GWse 320 (323)
++.|++||+++.|.||+|.-||.|..= .--.-||-|
T Consensus 263 ycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWwe 300 (627)
T KOG4348|consen 263 YCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWE 300 (627)
T ss_pred heeeeeeecCCCccceeeccccEEEEecccccccceee
Confidence 589999999999999999999998753 233467865
No 70
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=44.14 E-value=2.9e+02 Score=26.33 Aligned_cols=158 Identities=17% Similarity=0.303 Sum_probs=104.1
Q ss_pred hhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHH
Q 020634 83 EAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSR 162 (323)
Q Consensus 83 Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdR 162 (323)
.-+..|+.-|--|+++-. .+ |..+-..|+..-.-++-=|.-...-|-+-|.+||+.-- .---.+| +-
T Consensus 46 Dk~D~lak~l~~yA~~E~----~~-l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~--~~cK~~r------~e 112 (219)
T PF06730_consen 46 DKGDELAKQLQDYANTEN----PN-LKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYG--TICKHAR------DE 112 (219)
T ss_pred hhhHHHHHHHHHHHhcCC----cc-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHH------HH
Confidence 445678888888987643 12 55577889999999999999999999999999998642 2222222 22
Q ss_pred HHHHHHHhHHHHHHHHh--hhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHH-HHHHHH-HHHH
Q 020634 163 MRQEAETQAVEVSKRQQ--RVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRL-TFQRLV-AMVE 238 (323)
Q Consensus 163 mRQEaE~qa~eV~rRq~--k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl-TlQRLi-aMVe 238 (323)
|..---++--|+.+++. |.|.- ||-+-..+-.||+.|+..+-..+--.+.=---|...|. |+| .+..++ ..|-
T Consensus 113 lK~~~~ar~kEikq~~~Leklr~k-~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEk--qKl~DlK~i~sdFv~ 189 (219)
T PF06730_consen 113 LKKFNKARNKEIKQLKQLEKLRQK-NPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEK--QKLKDLKKIFSDFVT 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 33333344445555443 44422 55555557788888887666555555555555555543 343 567766 6888
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 020634 239 GEKNYHLRIAAILGDVEA 256 (323)
Q Consensus 239 aEr~YHqrv~~ILd~l~~ 256 (323)
-|-.||-+.+++|..-+.
T Consensus 190 iEM~fHaKALEv~T~a~q 207 (219)
T PF06730_consen 190 IEMVFHAKALEVYTAAYQ 207 (219)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999876543
No 71
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=42.28 E-value=3.1e+02 Score=26.03 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=80.1
Q ss_pred hhhhhchhhhhhhccCCCCC-CccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHH
Q 020634 83 EAGTKLSEDCCRYGAENNQN-INENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYS 161 (323)
Q Consensus 83 Ei~~KLaeDc~KYG~en~~~-~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYd 161 (323)
|.+.+|..=|.+|.-...-+ ...+.+.++=..+=+--..+=+.|+.+-.-|.++|++.|-.++. |=+.+...|+
T Consensus 37 EYA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~-----~~~~~~k~~~ 111 (234)
T cd07686 37 EYASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIK-----DKQQVKKSYI 111 (234)
T ss_pred HHHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHH
Confidence 56677777788874321100 11122334433333344444588999999999999999977754 3355555555
Q ss_pred HHHHHHHH-----hHHHHHHHHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHH---H
Q 020634 162 RMRQEAET-----QAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQR---L 233 (323)
Q Consensus 162 RmRQEaE~-----qa~eV~rRq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQR---L 233 (323)
-..+..+. .-.||.|-+.+=. +.+...++|..|+++.- . -||.-.-|....+.+...++--+ |
T Consensus 112 ~~~~kl~~e~~~~~~~~l~K~K~~Y~-----~~~~~~e~ar~K~~~a~---~-~gk~~~Ka~~k~~~~~~km~~~kN~Yl 182 (234)
T cd07686 112 GVHQQIEAEMYKVTKTELEKLKCSYR-----QLTKEVNSAKEKYKDAV---A-KGKETEKARERYDKATMKLHMLHNQYV 182 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHhh---h-cccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 55555542 2233433322211 11223333333333210 0 12322333333333333333222 3
Q ss_pred HHHH----HhhhhHHHHHHHHHHHHHH
Q 020634 234 VAMV----EGEKNYHLRIAAILGDVEA 256 (323)
Q Consensus 234 iaMV----eaEr~YHqrv~~ILd~l~~ 256 (323)
|++- --++-||+-+=.|||.|.+
T Consensus 183 l~i~~aN~~k~~Yy~~~lP~lLd~lQ~ 209 (234)
T cd07686 183 LAVKGAQLHQHQYYDFTLPLLLDSLQK 209 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3477899888888887654
No 72
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=42.13 E-value=3.3e+02 Score=26.33 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=59.5
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccch-------hhHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 020634 111 AAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDA-------RHLAQRYSRMRQEAETQAVEVSKRQQRVRE 183 (323)
Q Consensus 111 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDA-------RhLaqRYdRmRQEaE~qa~eV~rRq~k~re 183 (323)
+-..+..-|+.+|.-+..|++.|-+...-||-.=|- ++. +.-+.-|.|+|+|.---..|..|=|.|+|.
T Consensus 72 ~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E----~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rK 147 (231)
T cd07643 72 ALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIE----EWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARK 147 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 333355556779999999999999998877754321 122 334566999999999999999999999998
Q ss_pred CCChhhhhhhHHHHHHHH
Q 020634 184 APNPENVAKLHAAEARMQ 201 (323)
Q Consensus 184 s~n~e~~~KLq~AE~Kl~ 201 (323)
.. ++.-..|..|.+-+.
T Consensus 148 g~-~~~~~~ldsa~~dvn 164 (231)
T cd07643 148 GK-GDLQPQLDSAMQDVN 164 (231)
T ss_pred cC-CccchHHHHHHHHHH
Confidence 65 443344444443333
No 73
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=39.33 E-value=3.4 Score=28.97 Aligned_cols=18 Identities=22% Similarity=0.600 Sum_probs=12.5
Q ss_pred CccchhheeeeeccCCCc
Q 020634 277 SSQKAVYFLAEAIHPFTA 294 (323)
Q Consensus 277 ~~~~~~yFlaev~hpf~a 294 (323)
.....++||.|+.|||+.
T Consensus 16 ~~~~TG~wl~E~~hpy~~ 33 (38)
T PF13587_consen 16 TGRPTGFWLSELAHPYYV 33 (38)
T ss_dssp TTEE--B-HHHHHHHHHH
T ss_pred CCCcceeccHHHhhHHHH
Confidence 456889999999999963
No 74
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=39.02 E-value=41 Score=35.58 Aligned_cols=61 Identities=33% Similarity=0.427 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcHHH-----HHHHHHHHHHhHHHHHHHHH---HHH------HhhhhHHHHHHHHHHHHHHHHHhh
Q 020634 200 MQELKANMAILGKEA-----AAALAAIEAQQHRLTFQRLV---AMV------EGEKNYHLRIAAILGDVEAEMVSE 261 (323)
Q Consensus 200 l~ELks~Ma~LGKEA-----~aAM~aVEaQQQrlTlQRLi---aMV------eaEr~YHqrv~~ILd~l~~EMvsE 261 (323)
..-|=+.++-||||| +|.++||||+|.=..-..|| .|- -.+-+-|.-|-..| .||.+|+.-
T Consensus 318 w~sLP~sL~kLGKEa~~~Rd~A~~aA~eALqEASAaE~lir~Ls~fseL~ssak~~~P~~~v~~Fl-~lh~~l~~a 392 (579)
T PF06075_consen 318 WDSLPSSLAKLGKEAMQQRDAAQKAAVEALQEASAAESLIRCLSMFSELCSSAKEDNPQPTVEQFL-SLHQDLVQA 392 (579)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHH-HHHHHHHHH
Confidence 446778999999999 58999999999887655554 452 24444666665555 366665443
No 75
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=38.82 E-value=73 Score=26.90 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 020634 196 AEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 257 (323)
Q Consensus 196 AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~E 257 (323)
.+.++.+|...+.-|......+.+..+.-++|+.-.+--+...+...+-..++.|+|.|+.=
T Consensus 16 ~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a 77 (165)
T PF01025_consen 16 LEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERA 77 (165)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444555566666666555444444455566666666666666543
No 76
>PRK05849 hypothetical protein; Provisional
Probab=38.75 E-value=48 Score=36.25 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=40.1
Q ss_pred hhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHH-------HHHHHHHHHHhh---hhhhhHHHHh
Q 020634 82 IEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHV-------EKEQEDFNRLLS---SQVLDPLRAM 144 (323)
Q Consensus 82 ~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~m-------EkEre~l~r~L~---~QV~ePLRaM 144 (323)
++=...|-|||++||+=.- . .+|||+..==.-.+.+ ++|++++++.|. ++++.-+..+
T Consensus 434 l~~i~~lle~~~~~Gtl~F---a--~~AR~~Fva~~~l~sl~~~g~~s~~~~~~f~~s~~Tv~~~~~~D~~~l 501 (783)
T PRK05849 434 LDKIYWLLEDCKRYGTLPF---A--GIARAAFVATQLLKSLVEIGALSQEELDAFLNSLNTVSKELSKDLNSL 501 (783)
T ss_pred HHHHHHHHHHHHHhCCchh---H--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 5557889999999999743 3 4999987643333332 578888887664 4666666665
No 77
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.54 E-value=3.4e+02 Score=24.88 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=40.0
Q ss_pred hhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCC
Q 020634 84 AGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP 149 (323)
Q Consensus 84 i~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaP 149 (323)
.+.+|..=|+||..-+. ...| ++..+-..+=..-..+=+-++.|-..|.+.|-+||+..-.+.+
T Consensus 38 Yak~L~kLakk~~~~~~-~e~g-~~~~~w~~i~~e~e~~a~~H~~la~~l~~~ve~~l~~~~~~~~ 101 (228)
T cd07650 38 YVQGLRKLARRNEPLNK-SLLG-VFQNPWLTIESETEFIAASHGELAQRIETDVEEPLRDFATSTE 101 (228)
T ss_pred HHHHHHHHHhhcccccc-hhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 45677777888864443 2334 4543333333333334455677777888899999999987764
No 78
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=36.24 E-value=27 Score=36.41 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=33.4
Q ss_pred eeee--eccCCCcCCccceeeecCCEEEEEEecCcchhhhc
Q 020634 284 FLAE--AIHPFTAASEKELSLGVGDYVVVRKVCYISFLRQM 322 (323)
Q Consensus 284 Flae--v~hpf~aese~ELsLsvGDyVVVRqVs~~GWse~~ 322 (323)
||-+ ++.||.+.-+.|||+.-|-.|.|=+-..+||-|-+
T Consensus 422 yLEkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV 462 (483)
T KOG2546|consen 422 YLEKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGV 462 (483)
T ss_pred HHHHHHhhcccccccccccccccccEEEEEEecCCcchhhe
Confidence 4444 47899999999999999999999888999999853
No 79
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.77 E-value=2.1e+02 Score=30.10 Aligned_cols=141 Identities=23% Similarity=0.196 Sum_probs=0.0
Q ss_pred chhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHH----------------
Q 020634 59 GTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHV---------------- 122 (323)
Q Consensus 59 aaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~m---------------- 122 (323)
.+|+|||.|-|.-|-+...=.|--+..-..=||| ++.=|.+...+.-|.|=+-.|-+|-+-|
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~--~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~ 79 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQE--ERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYE 79 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred ----------------HHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHH-----HHHHHHHHHHHhHHHHHHHHhhh
Q 020634 123 ----------------EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQ-----RYSRMRQEAETQAVEVSKRQQRV 181 (323)
Q Consensus 123 ----------------EkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaq-----RYdRmRQEaE~qa~eV~rRq~k~ 181 (323)
+.=-.+|...|.+||..||-..+.=-|==+.+-+.. =|||+|.--+.- |.+.
T Consensus 80 p~~~g~~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kv-------q~~k 152 (460)
T KOG3771|consen 80 PDWPGRDYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKL-------QAKK 152 (460)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHH-------HHhc
Q ss_pred ccCCChhhhhhhHHHHHHHHHHHHHHHHhcHH
Q 020634 182 REAPNPENVAKLHAAEARMQELKANMAILGKE 213 (323)
Q Consensus 182 res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKE 213 (323)
+.. ..|+.-||..|..-+.--..|-.+
T Consensus 153 ~kd-----~~k~~KAeeEl~~Aq~~fE~lN~~ 179 (460)
T KOG3771|consen 153 KKD-----EAKLAKAEEELEKAQQVFEELNNE 179 (460)
T ss_pred CCC-----hhhhHHHHHHHHHHHHHHHHHHHH
No 80
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=30.65 E-value=4.5e+02 Score=24.56 Aligned_cols=188 Identities=18% Similarity=0.271 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCCCCCCCcceechHHHH----HHHHHHHHHhh-hhchhhhhHHHhhhhhheeecccchhhhhhhchhhhh
Q 020634 19 QQAVIKQFSASGYERSDVMVIDEVEMQ----RHQQLEKLYRS-TRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCC 93 (323)
Q Consensus 19 QQAV~Kqf~~~gy~~~d~~v~DE~Elq----~hq~LekLY~S-TRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~ 93 (323)
.|.+.+.||.++- +-.|-.| .||. .-+..++.|.. .+.++.||+.+-.= .--|-++|.-|++-+-
T Consensus 13 kq~~~e~~g~~~~--~~~it~D-~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l-------~q~q~~lg~~f~~~~~ 82 (229)
T PF06456_consen 13 KQMVSEKLGKKED--SRAITVD-DELDAKLELLRDTQRTYRGLLKHARAYQNRLQAL-------SQTQKELGDFFAELGV 82 (229)
T ss_dssp -------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccc--cchhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 4588999985552 2233344 3332 33333333432 34444454443322 2234455555554443
Q ss_pred hhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHH
Q 020634 94 RYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVE 173 (323)
Q Consensus 94 KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~e 173 (323)
+ | + + -.|.++-..+|.++..|++.++.|+..|.-=+ .-|...+.- -.+|++.--.+|..-|=|-.+-..+
T Consensus 83 ~---e-~---~-~~l~~~f~~~~~~~~~~~~~~~~L~~~l~~~~-~~l~Tf~~k-aI~DT~~Tik~ye~aR~EY~ay~~~ 152 (229)
T PF06456_consen 83 R---E-K---S-PALGEEFSANGEAQRSLAKQGETLLKALKRFL-SDLNTFRNK-AIPDTLLTIKKYEDARFEYDAYRLW 152 (229)
T ss_dssp ------H-----CCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---C-C---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2 1 1 24899999999999999999999999876433 345555544 4799999999999999998887777
Q ss_pred HHHHHhhhccCC-ChhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHH
Q 020634 174 VSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRL 228 (323)
Q Consensus 174 V~rRq~k~res~-n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrl 228 (323)
+-.=... +.| ..-...|...+....++.|....-|-....--|--.++--=++
T Consensus 153 lke~~~e--~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~ 206 (229)
T PF06456_consen 153 LKEMSDE--LDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNV 206 (229)
T ss_dssp HHHHH----TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcc--cCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6544222 334 4555678888888888888888888777777776666543333
No 81
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=30.59 E-value=26 Score=28.06 Aligned_cols=24 Identities=38% Similarity=0.259 Sum_probs=18.2
Q ss_pred CCCcCCccceeeecCCEEEEEEecCc
Q 020634 291 PFTAASEKELSLGVGDYVVVRKVCYI 316 (323)
Q Consensus 291 pf~aese~ELsLsvGDyVVVRqVs~~ 316 (323)
.|+|.++++ +..||.|+|-.+..+
T Consensus 113 ~w~A~s~~~--i~~G~~V~Vv~v~g~ 136 (144)
T PF01957_consen 113 RWRARSEDE--IPKGDRVRVVGVEGN 136 (144)
T ss_dssp EEEEEESST--B-TT-EEEEEEEESS
T ss_pred EEEEEeCCC--CCCCCEEEEEEEECC
Confidence 367888888 999999999888764
No 82
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=29.95 E-value=3.4e+02 Score=22.89 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=50.9
Q ss_pred hhhhhhchhhhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcC
Q 020634 82 IEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG 147 (323)
Q Consensus 82 ~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G 147 (323)
-|-+.+|..=|++|..-+. ... .++..|-..+-..-..+-+-+..+-..|.+.|.+|++....-
T Consensus 31 ~eYak~L~kLak~~~~~~~-~~~-~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~~ 94 (191)
T cd07610 31 EEYAKNLQKLAKKFSKKPE-SGK-TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKED 94 (191)
T ss_pred HHHHHHHHHHHHHhhcccC-CCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888876543 222 468888888888888888999999999999999999988764
No 83
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.60 E-value=1.5e+02 Score=28.69 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHH--HHHHHHhcCCCCCCCCcceechHHHHH
Q 020634 2 ESLRRQASKLKEQVAKQQ--QAVIKQFSASGYERSDVMVIDEVEMQR 46 (323)
Q Consensus 2 dairKqAsklrEqVAkQQ--QAV~Kqf~~~gy~~~d~~v~DE~Elq~ 46 (323)
|+|||||-+|--|..-+= -..|+.=++||| .+|+..+..
T Consensus 8 e~LRkqArslE~~ld~kL~syskl~as~~gg~------~~~~s~~~~ 48 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSKLVSYSKLGASTHGGY------DIDTSPLSG 48 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CCCcccccC
Confidence 799999999988876552 234444445555 346655543
No 84
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.50 E-value=95 Score=24.08 Aligned_cols=48 Identities=35% Similarity=0.398 Sum_probs=33.5
Q ss_pred HHHHhHHHHHH-HHhhhccCCChhhhhhhHHHHHHHHHHHHHHHHhcHHH
Q 020634 166 EAETQAVEVSK-RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEA 214 (323)
Q Consensus 166 EaE~qa~eV~r-Rq~k~res~n~e~~~KLq~AE~Kl~ELks~Ma~LGKEA 214 (323)
++|.+|-.... .=.|++.+ |-.---||+.||.+..+|...|..|-++-
T Consensus 7 ~~EirakQ~~~eEL~kvk~~-n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSA-NLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543322 22345544 66667899999999999999999987764
No 85
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=29.06 E-value=31 Score=28.48 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=9.0
Q ss_pred eeecCCEEEEE
Q 020634 301 SLGVGDYVVVR 311 (323)
Q Consensus 301 sLsvGDyVVVR 311 (323)
..+|||||+|-
T Consensus 41 ~~~vGDyVLVH 51 (90)
T PRK10409 41 QPRVGQWVLVH 51 (90)
T ss_pred ccCCCCEEEEe
Confidence 46899999983
No 86
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.48 E-value=36 Score=27.70 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=13.0
Q ss_pred eeeecCCEEEEEEec
Q 020634 300 LSLGVGDYVVVRKVC 314 (323)
Q Consensus 300 LsLsvGDyVVVRqVs 314 (323)
|++..||||+|+.-.
T Consensus 4 L~Vk~Gd~ViV~~~~ 18 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQ 18 (75)
T ss_pred cccCCCCEEEEecCc
Confidence 788999999998755
No 87
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=27.96 E-value=50 Score=36.18 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=25.8
Q ss_pred eeeeeccCCC--cCCccceeeecCCEEEEE-EecC-cchh
Q 020634 284 FLAEAIHPFT--AASEKELSLGVGDYVVVR-KVCY-ISFL 319 (323)
Q Consensus 284 Flaev~hpf~--aese~ELsLsvGDyVVVR-qVs~-~GWs 319 (323)
.+|.++|-|| |-+--||||..||.|++= +|.. .||-
T Consensus 804 ~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWW 843 (865)
T KOG2996|consen 804 VVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWW 843 (865)
T ss_pred eeeeeeeccccCCCchhhcccccCCEEEEehhccccCcee
Confidence 5666666665 455678999999998863 5555 7883
No 88
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=27.23 E-value=85 Score=28.29 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=61.7
Q ss_pred echHHHHHHHHHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhhhccCCCCCCccchhhHHHHHhh-H
Q 020634 39 IDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYG-D 117 (323)
Q Consensus 39 ~DE~Elq~hq~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~KYG~en~~~~~~~~LarAa~~yg-~ 117 (323)
++|+|...-..-=+.+.-|+ -.|=|..++.+=|+|.+.-...|-..+|..+|++-|+. =|-|+|.+-.+| .
T Consensus 31 LTe~Ey~~L~~rA~~aGlS~--SEfIRqAi~~~~g~V~v~r~T~e~~~~lir~l~gianN------LNQLAr~aN~~~~~ 102 (147)
T PRK13858 31 LRSAEYESFSAQARLLGLSD--SMAIRVAVRRIGGFLEIDAETREKMEAILQSIGTLSSN------IAALLSAYAENPRP 102 (147)
T ss_pred cCHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeEeecccCHHHHHHHHHHHHHHHHH------HHHHHHHHhcCCCC
Confidence 68888655444434443333 36888888765599854555556566777777766542 356999999999 7
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 020634 118 ARKHVEKEQEDFNRLLSS 135 (323)
Q Consensus 118 a~~~mEkEre~l~r~L~~ 135 (323)
-...|+.||--|=+.|..
T Consensus 103 ~~~~l~~er~~~g~~~~~ 120 (147)
T PRK13858 103 DLEALRAERIAFGKEFAD 120 (147)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 889999999877776654
No 89
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=26.71 E-value=26 Score=27.16 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.9
Q ss_pred hhcCCCccchhhHHHHHH
Q 020634 144 MITGAPLEDARHLAQRYS 161 (323)
Q Consensus 144 Mv~GaPLEDARhLaqRYd 161 (323)
+|.|.|+++|+.|.++|.
T Consensus 52 ~V~~i~~~~A~~Lg~~f~ 69 (73)
T PF11697_consen 52 AVLGISLEEAIALGRKFG 69 (73)
T ss_pred EEcCCCHHHHHHHHHHhC
Confidence 577999999999999985
No 90
>KOG3731 consensus Sulfatases [Carbohydrate transport and metabolism]
Probab=26.60 E-value=24 Score=37.21 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=22.0
Q ss_pred ccchhheeeeeccCCCcCCccceeeecCCEEEEEEecCcchhhhc
Q 020634 278 SQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVCYISFLRQM 322 (323)
Q Consensus 278 ~~~~~yFlaev~hpf~aese~ELsLsvGDyVVVRqVs~~GWse~~ 322 (323)
..--+||+|+++|||++ ||| |-||+|-.
T Consensus 126 ~GYrT~~~GKylney~g-----------syi------PpgW~ew~ 153 (541)
T KOG3731|consen 126 QGYRTAFFGKYLNEYNG-----------SYI------PPGWSEWA 153 (541)
T ss_pred hceeeecchhhccccCc-----------ccC------CCCchhhh
Confidence 34457899999999997 554 89999853
No 91
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=26.41 E-value=39 Score=28.59 Aligned_cols=13 Identities=46% Similarity=0.532 Sum_probs=12.0
Q ss_pred ceeeecCCEEEEE
Q 020634 299 ELSLGVGDYVVVR 311 (323)
Q Consensus 299 ELsLsvGDyVVVR 311 (323)
.-+|.+||+|.++
T Consensus 53 ~~~L~~GD~VLA~ 65 (124)
T PF15057_consen 53 RHSLQVGDKVLAP 65 (124)
T ss_pred cCcCCCCCEEEEe
Confidence 6689999999999
No 92
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=25.60 E-value=36 Score=31.85 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=14.5
Q ss_pred CCCcCCccceeeecCCEEEEEEecCcch
Q 020634 291 PFTAASEKELSLGVGDYVVVRKVCYISF 318 (323)
Q Consensus 291 pf~aese~ELsLsvGDyVVVRqVs~~GW 318 (323)
|.+-..+++=.++|||.|.||.+.|.|-
T Consensus 124 p~~r~~~~~~~F~vGd~Vrv~~~~~~~H 151 (222)
T PF02211_consen 124 PADRPVDAPPRFAVGDRVRVRNLPPPGH 151 (222)
T ss_dssp --EETTSSS-SS-TT-EEEE-----SS-
T ss_pred CccCCCCCCCCCCCCCEEEECCCCCCCc
Confidence 5566777888999999999999998864
No 93
>COG5346 Predicted membrane protein [Function unknown]
Probab=25.38 E-value=51 Score=29.45 Aligned_cols=14 Identities=50% Similarity=0.724 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhh
Q 020634 229 TFQRLVAMVEGEKN 242 (323)
Q Consensus 229 TlQRLiaMVeaEr~ 242 (323)
|+|||++|-|-|.+
T Consensus 54 t~~rimaMAekEQa 67 (136)
T COG5346 54 TLQRIMAMAEKEQA 67 (136)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999987
No 94
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=25.26 E-value=53 Score=25.50 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=12.8
Q ss_pred ceeeecCCEEEEEEecC
Q 020634 299 ELSLGVGDYVVVRKVCY 315 (323)
Q Consensus 299 ELsLsvGDyVVVRqVs~ 315 (323)
-+.++.||.|.|+++.|
T Consensus 70 n~~v~igd~V~V~~~~~ 86 (87)
T PF02359_consen 70 NAGVSIGDRVTVRPYDP 86 (87)
T ss_dssp HCT--TTSEEEEEEETT
T ss_pred hCCcCCCCEEEEEECCC
Confidence 35678999999999987
No 95
>COG5490 Uncharacterized conserved protein [Function unknown]
Probab=25.16 E-value=2.3e+02 Score=26.00 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=71.3
Q ss_pred HHHhcCCCCCCCCcceechHHHHHHH--HHHHHHhhhhchhhhhHHHhhhhhheeecccchhhhhhhchhhhhh----h-
Q 020634 23 IKQFSASGYERSDVMVIDEVEMQRHQ--QLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCR----Y- 95 (323)
Q Consensus 23 ~Kqf~~~gy~~~d~~v~DE~Elq~hq--~LekLY~STRaaKhFQrdIVRgvEGfis~gsKq~Ei~~KLaeDc~K----Y- 95 (323)
|.+|+--|. .....|=+++..|. .||-|-.|-++|+ -|-.+-|+|+++..++++||.-- |
T Consensus 32 f~~Faekgv---eqs~~a~a~~~th~~knleAleasv~aa~----------~ga~~Lg~kt~a~lr~~ae~~~s~aesl~ 98 (158)
T COG5490 32 FRRFAEKGV---EQSKEAYAKIKTHHEKNLEALEASVEAAA----------AGATSLGLKTIAALRDNAEEIASHAESLR 98 (158)
T ss_pred HHHHHHhhh---hhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------hhHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456764444 23345667888876 4777777777765 37788899999999999998643 2
Q ss_pred ccCCCCCCccchhhHHHHHhhHhhHHHH------HHHHHHHHHhhhhhhhHHHHhhc
Q 020634 96 GAENNQNINENILPKAAAIYGDARKHVE------KEQEDFNRLLSSQVLDPLRAMIT 146 (323)
Q Consensus 96 G~en~~~~~~~~LarAa~~yg~a~~~mE------kEre~l~r~L~~QV~ePLRaMv~ 146 (323)
|..|+ + . =-.++-.-+|++.| ++=-.+-+.-++-+.+||++-|-
T Consensus 99 aaks~---q-E---lvelQTafark~~Eaaveqa~~~qe~arks~~es~kplk~r~e 148 (158)
T COG5490 99 AAKSL---Q-E---LVELQTAFARKSFEAAVEQAKEVQELARKSAEESIKPLKARIE 148 (158)
T ss_pred ccCCH---H-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33332 1 1 12455566777776 45566788889999999998663
No 96
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]
Probab=24.66 E-value=35 Score=32.93 Aligned_cols=13 Identities=62% Similarity=0.938 Sum_probs=11.0
Q ss_pred eeecCCEEEEEEe
Q 020634 301 SLGVGDYVVVRKV 313 (323)
Q Consensus 301 sLsvGDyVVVRqV 313 (323)
+|.||||||+..|
T Consensus 56 ~LevGDYvvs~~v 68 (254)
T COG1948 56 TLEVGDYVVSDDV 68 (254)
T ss_pred ecccccEEeecCe
Confidence 6899999998755
No 97
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.52 E-value=1.6e+02 Score=26.24 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=36.1
Q ss_pred hhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhh
Q 020634 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 145 (323)
Q Consensus 107 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv 145 (323)
.|+.+-..||..-..+..--.+|..-+....++|||.++
T Consensus 58 ~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~ 96 (185)
T cd07628 58 EITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLL 96 (185)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999886
No 98
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.97 E-value=1.8e+02 Score=26.05 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=32.4
Q ss_pred hhhhhccCCCCCCccchhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhc
Q 020634 91 DCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 146 (323)
Q Consensus 91 Dc~KYG~en~~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~ 146 (323)
-|...+...+ ++.|+-+-..+|.+-...=.-=++|..-+...+.|||+.|+.
T Consensus 48 ~fn~ls~~E~----~~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~ 99 (187)
T cd07629 48 RFNAFSLEEQ----KSELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ 99 (187)
T ss_pred HHHHHhhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444455543 123555555555554444445556888889999999999874
No 99
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=22.61 E-value=46 Score=26.59 Aligned_cols=9 Identities=67% Similarity=1.176 Sum_probs=7.9
Q ss_pred eecCCEEEE
Q 020634 302 LGVGDYVVV 310 (323)
Q Consensus 302 LsvGDyVVV 310 (323)
..|||||+|
T Consensus 36 ~~vGD~VLV 44 (76)
T TIGR00074 36 VKVGDYVLV 44 (76)
T ss_pred CCCCCEEEE
Confidence 579999998
No 100
>PF04287 DUF446: tRNA pseudouridine synthase C; InterPro: IPR007384 This family includes an N-terminal region of unknown function from the Erwinia carotovora exoenzyme regulation regulon orf1 protein, which also contains a domain found in RNA pseudouridylate synthase IPR006145 from INTERPRO.; PDB: 2HGK_A.
Probab=22.09 E-value=75 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 020634 244 HLRIAAILGDVEAEMVSEKQRKESAPPV 271 (323)
Q Consensus 244 Hqrv~~ILd~l~~EMvsE~q~~Es~~~~ 271 (323)
|+.+...|++||.+|-.---=...+|++
T Consensus 1 h~~~~~lL~~LE~~Lr~~~lWq~~~P~~ 28 (100)
T PF04287_consen 1 HQQLAELLDQLEAELRQLGLWQSEPPSP 28 (100)
T ss_dssp -HHHHHHHHHHHHHHHHTT--------G
T ss_pred ChHHHHHHHHHHHHHHHhCccCCCCCCH
Confidence 8999999999999997654433444433
No 101
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=20.76 E-value=53 Score=26.62 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=8.0
Q ss_pred eecCCEEEEE
Q 020634 302 LGVGDYVVVR 311 (323)
Q Consensus 302 LsvGDyVVVR 311 (323)
+.|||||.|-
T Consensus 43 ~~vGDyVLVH 52 (82)
T PRK10413 43 DLLGQWVLVH 52 (82)
T ss_pred cccCCEEEEe
Confidence 4589999983
No 102
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.70 E-value=6.1e+02 Score=22.65 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=77.3
Q ss_pred hhhHHHHHhhHhhHHHHHHHHHHHHHhhhhhhhHHHHhhcCCCccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhccCCC
Q 020634 107 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPN 186 (323)
Q Consensus 107 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqRYdRmRQEaE~qa~eV~rRq~k~res~n 186 (323)
.|+.|-..+|.+-.....--.++...+...+++|||-++.=+ .=-|.+-.+=+..+.+-|....++.|++..
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~--~svk~~l~~R~~~q~~~e~~~e~L~~k~~~------ 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYS--DAVKDVLKRRDQFQIEYELSVEELNKKRLE------ 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 389999999999999999999999999999999999887411 111223333345666677767777777655
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhHHHHH-HHHHHHHHhhhhHHHHHHHHHHHH
Q 020634 187 PENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGDV 254 (323)
Q Consensus 187 ~e~~~KLq~AE~Kl~ELks~Ma~LGKEA~aAM~aVEaQQQrlTl-QRLiaMVeaEr~YHqrv~~ILd~l 254 (323)
--.+++.|+.++......|. +| +.--+.+- +..| .=|+.+++.--.|.+.++.+-+.+
T Consensus 139 --l~~ev~~a~~~~e~~~~~~~---~E----~~rF~~~K-~~d~k~~l~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 139 --LLKEVEKLQDKLECANADLK---AD----LERWKQNK-RQDLKKILLDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred --HHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12233444444444444331 00 11111111 1112 225566777777777776655443
No 103
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.61 E-value=1.8e+02 Score=21.17 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 020634 155 HLAQRYSRMRQEAETQAVEVSKRQQRV 181 (323)
Q Consensus 155 hLaqRYdRmRQEaE~qa~eV~rRq~k~ 181 (323)
.|+..|++|.+|.+...++|.+-..+.
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888899888888888766554
No 104
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=20.32 E-value=29 Score=37.11 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=25.7
Q ss_pred eeeccCCCcCCccceeeecCCEE-EEEEecCcchhh
Q 020634 286 AEAIHPFTAASEKELSLGVGDYV-VVRKVCYISFLR 320 (323)
Q Consensus 286 aev~hpf~aese~ELsLsvGDyV-VVRqVs~~GWse 320 (323)
+.++.||.+.++|++++..||+. |+|.=-.+||.+
T Consensus 581 ~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~ 616 (640)
T KOG3565|consen 581 SKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTR 616 (640)
T ss_pred eecccCcCCCCCCccccCcchhHHHHhhcccCCCCC
Confidence 45577888888888888888765 445556778875
Done!